Query 045507
Match_columns 566
No_of_seqs 287 out of 3976
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-30 5.6E-35 278.8 14.8 237 156-410 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.8E-24 6.2E-29 255.1 20.1 236 149-398 120-425 (1249)
3 1vt4_I APAF-1 related killer D 99.9 9.5E-23 3.3E-27 222.7 13.7 206 155-398 130-418 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 2.2E-20 7.7E-25 202.7 21.5 234 151-398 122-425 (591)
5 4fcg_A Uncharacterized protein 99.5 2.7E-13 9.2E-18 135.5 14.1 111 451-565 182-295 (328)
6 2ell_A Acidic leucine-rich nuc 99.5 2.5E-13 8.4E-18 121.8 10.6 132 428-565 22-164 (168)
7 3rfs_A Internalin B, repeat mo 99.4 8.7E-13 3E-17 128.1 14.5 136 425-564 58-197 (272)
8 4fcg_A Uncharacterized protein 99.4 1.3E-12 4.5E-17 130.5 15.9 137 427-565 124-271 (328)
9 3e6j_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 123.5 14.3 137 417-557 28-169 (229)
10 3m19_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 124.3 15.1 134 428-565 33-172 (251)
11 2v70_A SLIT-2, SLIT homolog 2 99.4 1.4E-12 4.8E-17 122.3 12.8 139 415-557 18-163 (220)
12 2v9t_B SLIT homolog 2 protein 99.4 1.4E-12 4.9E-17 122.3 12.9 139 415-557 18-162 (220)
13 2o6q_A Variable lymphocyte rec 99.4 2.9E-12 9.8E-17 124.3 15.3 111 451-565 84-198 (270)
14 2o6s_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 118.5 15.3 131 427-560 25-161 (208)
15 3e6j_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 121.8 13.2 129 432-565 21-152 (229)
16 4ezg_A Putative uncharacterize 99.4 1.8E-12 6.2E-17 119.4 12.2 136 417-556 53-190 (197)
17 4ezg_A Putative uncharacterize 99.4 1.6E-12 5.4E-17 119.8 11.6 131 427-564 41-175 (197)
18 2xot_A Amphoterin-induced prot 99.4 2.1E-12 7E-17 130.9 12.7 146 414-564 24-179 (361)
19 2o6q_A Variable lymphocyte rec 99.4 7.7E-12 2.6E-16 121.3 15.7 132 429-564 36-173 (270)
20 1p9a_G Platelet glycoprotein I 99.4 2.7E-12 9.3E-17 125.8 12.0 129 431-564 56-188 (290)
21 3rfs_A Internalin B, repeat mo 99.4 7.5E-12 2.6E-16 121.5 14.9 147 415-564 70-222 (272)
22 2je0_A Acidic leucine-rich nuc 99.4 1.5E-12 5.1E-17 114.1 9.0 124 428-556 15-149 (149)
23 1h6t_A Internalin B; cell adhe 99.3 9E-12 3.1E-16 122.2 14.8 136 420-563 58-193 (291)
24 2v9t_B SLIT homolog 2 protein 99.3 4.1E-12 1.4E-16 119.2 11.6 128 433-565 14-145 (220)
25 1a9n_A U2A', U2A'; complex (nu 99.3 1.4E-12 4.9E-17 117.7 8.2 126 428-558 17-151 (176)
26 3vq2_A TLR4, TOLL-like recepto 99.3 4.1E-12 1.4E-16 138.1 13.2 148 413-565 16-170 (606)
27 3m19_A Variable lymphocyte rec 99.3 7.4E-12 2.5E-16 120.0 13.0 130 428-561 57-192 (251)
28 4g8a_A TOLL-like receptor 4; l 99.3 4E-12 1.4E-16 138.7 12.2 143 417-564 40-189 (635)
29 2z62_A TOLL-like receptor 4, v 99.3 6.1E-12 2.1E-16 122.4 11.9 134 427-564 25-165 (276)
30 1ozn_A Reticulon 4 receptor; N 99.3 9.6E-12 3.3E-16 121.6 13.1 126 428-556 30-162 (285)
31 3qfl_A MLA10; coiled-coil, (CC 99.3 2.6E-12 8.9E-17 106.0 7.5 77 10-93 4-81 (115)
32 1h6u_A Internalin H; cell adhe 99.3 1.6E-11 5.5E-16 121.4 14.5 123 427-556 60-182 (308)
33 2v70_A SLIT-2, SLIT homolog 2 99.3 9.3E-12 3.2E-16 116.7 12.0 128 433-565 14-146 (220)
34 1p9a_G Platelet glycoprotein I 99.3 1.6E-11 5.5E-16 120.3 13.4 129 427-558 74-206 (290)
35 1h6t_A Internalin B; cell adhe 99.3 1.1E-11 3.9E-16 121.5 12.1 130 427-564 43-172 (291)
36 1h6u_A Internalin H; cell adhe 99.3 2.3E-11 7.8E-16 120.3 14.4 130 426-563 81-210 (308)
37 1xeu_A Internalin C; cellular 99.3 1.6E-11 5.4E-16 118.5 12.4 120 429-556 40-159 (263)
38 2wfh_A SLIT homolog 2 protein 99.3 2.3E-11 7.8E-16 111.5 12.6 120 433-557 13-136 (193)
39 2z63_A TOLL-like receptor 4, v 99.3 1.2E-11 4E-16 133.3 12.5 146 414-564 13-165 (570)
40 4b8c_D Glucose-repressible alc 99.3 3.2E-12 1.1E-16 141.2 8.1 108 450-562 222-330 (727)
41 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.7E-16 112.9 10.9 121 433-557 11-136 (192)
42 2o6s_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 111.9 13.4 128 433-565 10-141 (208)
43 3v47_A TOLL-like receptor 5B a 99.3 2E-11 6.7E-16 127.7 12.4 147 413-564 15-170 (455)
44 2o6r_A Variable lymphocyte rec 99.3 3.9E-11 1.3E-15 108.3 12.6 123 432-558 9-135 (177)
45 2xwt_C Thyrotropin receptor; s 99.3 9.4E-12 3.2E-16 118.3 8.8 133 428-564 29-172 (239)
46 1ozn_A Reticulon 4 receptor; N 99.2 3.6E-11 1.2E-15 117.4 12.8 124 430-556 105-234 (285)
47 1m9s_A Internalin B; cell inva 99.2 3.5E-11 1.2E-15 129.6 13.3 130 420-557 77-207 (605)
48 1ogq_A PGIP-2, polygalacturona 99.2 2.2E-11 7.6E-16 120.7 10.6 128 430-561 50-187 (313)
49 1xeu_A Internalin C; cellular 99.2 3.6E-11 1.2E-15 116.0 11.3 142 414-564 47-188 (263)
50 1m9s_A Internalin B; cell inva 99.2 6.9E-11 2.4E-15 127.3 14.6 137 420-564 55-191 (605)
51 3j0a_A TOLL-like receptor 5; m 99.2 4.4E-11 1.5E-15 134.9 13.3 146 412-562 8-162 (844)
52 3zyj_A Leucine-rich repeat-con 99.2 4.9E-11 1.7E-15 124.2 12.6 134 428-565 134-272 (440)
53 1dce_A Protein (RAB geranylger 99.2 3.8E-11 1.3E-15 128.6 11.5 118 431-553 442-566 (567)
54 3zyi_A Leucine-rich repeat-con 99.2 6.8E-11 2.3E-15 123.6 13.1 134 428-565 145-283 (452)
55 2xwt_C Thyrotropin receptor; s 99.2 3E-11 1E-15 114.7 9.4 133 429-565 54-222 (239)
56 2z80_A TOLL-like receptor 2, v 99.2 3.6E-11 1.2E-15 121.4 9.8 137 417-557 40-184 (353)
57 3zyj_A Leucine-rich repeat-con 99.2 8.7E-11 3E-15 122.3 13.0 143 417-564 52-201 (440)
58 4ecn_A Leucine-rich repeat pro 99.2 3.3E-11 1.1E-15 134.6 10.3 125 428-556 446-604 (876)
59 3zyi_A Leucine-rich repeat-con 99.2 9.4E-11 3.2E-15 122.5 12.8 143 417-564 63-212 (452)
60 2je0_A Acidic leucine-rich nuc 99.2 3.7E-11 1.3E-15 105.1 8.2 110 451-565 16-130 (149)
61 2z66_A Variable lymphocyte rec 99.2 4.4E-11 1.5E-15 118.1 9.7 126 429-557 100-233 (306)
62 2ell_A Acidic leucine-rich nuc 99.2 4.9E-11 1.7E-15 106.6 9.1 110 451-565 23-137 (168)
63 1ziw_A TOLL-like receptor 3; i 99.2 1.3E-10 4.4E-15 128.0 14.2 145 415-564 11-161 (680)
64 3o6n_A APL1; leucine-rich repe 99.2 5.1E-11 1.7E-15 122.0 9.9 125 429-556 44-174 (390)
65 4fmz_A Internalin; leucine ric 99.2 2.2E-10 7.6E-15 115.2 14.3 142 415-564 51-193 (347)
66 2ft3_A Biglycan; proteoglycan, 99.2 2E-10 6.8E-15 114.8 13.5 134 430-565 123-281 (332)
67 4eco_A Uncharacterized protein 99.2 9.4E-11 3.2E-15 127.9 12.0 132 430-565 433-583 (636)
68 1a9n_A U2A', U2A'; complex (nu 99.2 4.8E-11 1.6E-15 107.6 8.0 111 449-565 16-130 (176)
69 2id5_A Lingo-1, leucine rich r 99.2 1.1E-10 3.7E-15 122.9 12.0 144 416-564 19-168 (477)
70 1xku_A Decorin; proteoglycan, 99.2 2.4E-10 8.2E-15 114.1 13.8 132 428-565 50-188 (330)
71 2z80_A TOLL-like receptor 2, v 99.2 4.4E-11 1.5E-15 120.7 8.3 133 427-563 73-213 (353)
72 4b8c_D Glucose-repressible alc 99.1 4.5E-11 1.5E-15 132.0 8.8 136 430-566 173-311 (727)
73 2z7x_B TOLL-like receptor 1, v 99.1 1.1E-10 3.8E-15 124.3 11.6 123 429-558 20-149 (520)
74 1dce_A Protein (RAB geranylger 99.1 9.8E-11 3.3E-15 125.4 10.7 107 453-565 442-550 (567)
75 2xot_A Amphoterin-induced prot 99.1 1E-10 3.5E-15 118.4 10.3 128 433-565 21-153 (361)
76 4eco_A Uncharacterized protein 99.1 3.8E-11 1.3E-15 131.0 7.5 133 428-565 247-394 (636)
77 4ecn_A Leucine-rich repeat pro 99.1 1.5E-10 5.2E-15 129.2 11.9 131 431-565 674-823 (876)
78 1xku_A Decorin; proteoglycan, 99.1 1.7E-10 5.9E-15 115.2 11.2 85 479-564 192-279 (330)
79 3oja_A Leucine-rich immune mol 99.1 6.6E-11 2.3E-15 124.7 8.5 125 430-557 120-247 (487)
80 2z62_A TOLL-like receptor 4, v 99.1 1.1E-10 3.9E-15 113.3 9.2 124 430-556 76-233 (276)
81 3oja_B Anopheles plasmodium-re 99.1 1E-10 3.5E-15 126.7 9.7 122 430-556 75-201 (597)
82 4fmz_A Internalin; leucine ric 99.1 3.6E-10 1.2E-14 113.6 13.0 132 426-564 40-171 (347)
83 3o53_A Protein LRIM1, AGAP0063 99.1 9E-11 3.1E-15 116.5 8.3 125 429-557 119-247 (317)
84 4g8a_A TOLL-like receptor 4; l 99.1 1.6E-10 5.6E-15 125.8 11.0 120 439-563 40-163 (635)
85 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 103.8 9.1 78 479-556 33-114 (174)
86 2wfh_A SLIT homolog 2 protein 99.1 2.3E-10 7.9E-15 104.8 10.3 104 455-565 13-119 (193)
87 3bz5_A Internalin-J, INLJ; leu 99.1 3.5E-10 1.2E-14 118.1 12.9 125 427-564 61-186 (457)
88 2z7x_B TOLL-like receptor 1, v 99.1 5.9E-10 2E-14 118.6 14.7 133 427-565 321-461 (520)
89 3t6q_A CD180 antigen; protein- 99.1 2.2E-10 7.7E-15 124.3 11.7 142 417-563 21-168 (606)
90 2z66_A Variable lymphocyte rec 99.1 9.1E-11 3.1E-15 115.8 7.8 133 429-565 77-216 (306)
91 3oja_B Anopheles plasmodium-re 99.1 2E-10 6.8E-15 124.4 11.1 132 429-564 50-187 (597)
92 3rgz_A Protein brassinosteroid 99.1 1.8E-10 6.2E-15 128.5 11.1 89 477-565 630-722 (768)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2.8E-10 9.6E-15 122.4 12.0 135 415-557 38-179 (562)
94 3o53_A Protein LRIM1, AGAP0063 99.1 9.5E-11 3.2E-15 116.4 7.6 131 430-565 99-231 (317)
95 2z81_A CD282 antigen, TOLL-lik 99.1 1.9E-10 6.5E-15 123.3 10.3 136 419-558 16-159 (549)
96 3o6n_A APL1; leucine-rich repe 99.1 1.4E-10 4.8E-15 118.7 8.7 122 430-556 226-348 (390)
97 2ft3_A Biglycan; proteoglycan, 99.1 5E-10 1.7E-14 111.9 12.5 131 428-565 52-189 (332)
98 4glp_A Monocyte differentiatio 99.1 1.1E-10 3.8E-15 115.5 7.5 55 500-556 222-281 (310)
99 3cvr_A Invasion plasmid antige 99.1 3.5E-10 1.2E-14 120.6 11.8 114 430-558 120-241 (571)
100 3oja_A Leucine-rich immune mol 99.1 1.4E-10 4.6E-15 122.3 8.3 132 429-565 98-231 (487)
101 3vq2_A TLR4, TOLL-like recepto 99.1 1.5E-10 5.3E-15 125.6 9.0 132 429-564 398-537 (606)
102 1ogq_A PGIP-2, polygalacturona 99.1 2.7E-10 9.3E-15 112.8 9.7 134 428-565 147-286 (313)
103 3v47_A TOLL-like receptor 5B a 99.1 3.5E-10 1.2E-14 118.2 10.8 132 430-564 275-412 (455)
104 4glp_A Monocyte differentiatio 99.1 1.7E-10 6E-15 114.1 7.7 136 427-566 114-269 (310)
105 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.5E-09 5E-14 116.8 15.3 133 427-565 350-490 (562)
106 2id5_A Lingo-1, leucine rich r 99.1 3.6E-10 1.2E-14 118.9 10.3 133 430-565 80-218 (477)
107 3g39_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 100.8 9.2 99 433-535 12-113 (170)
108 3cvr_A Invasion plasmid antige 99.1 1.1E-09 3.8E-14 116.7 13.9 130 415-564 66-196 (571)
109 1o6v_A Internalin A; bacterial 99.0 1.2E-09 4.1E-14 114.5 13.8 130 427-564 262-391 (466)
110 1wwl_A Monocyte differentiatio 99.0 2.8E-10 9.5E-15 112.7 7.8 60 501-563 227-289 (312)
111 2z63_A TOLL-like receptor 4, v 99.0 3.8E-10 1.3E-14 121.5 9.4 135 427-565 49-194 (570)
112 3rgz_A Protein brassinosteroid 99.0 6.6E-10 2.2E-14 124.0 11.2 134 429-565 417-556 (768)
113 1ziw_A TOLL-like receptor 3; i 99.0 1.3E-09 4.4E-14 120.0 13.4 127 433-564 7-137 (680)
114 1ds9_A Outer arm dynein; leuci 99.0 4.5E-11 1.5E-15 110.1 1.4 120 429-553 47-180 (198)
115 3bz5_A Internalin-J, INLJ; leu 99.0 2.4E-09 8.3E-14 111.7 14.7 118 430-558 42-159 (457)
116 1w8a_A SLIT protein; signaling 99.0 5.4E-10 1.8E-14 102.2 8.5 103 455-564 11-118 (192)
117 1o6v_A Internalin A; bacterial 99.0 2.2E-09 7.4E-14 112.6 14.3 123 428-557 241-363 (466)
118 2z81_A CD282 antigen, TOLL-lik 99.0 4.8E-10 1.6E-14 120.1 9.5 127 435-565 10-141 (549)
119 2r9u_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 98.6 9.7 108 433-544 15-125 (174)
120 1wwl_A Monocyte differentiatio 99.0 1.1E-09 3.6E-14 108.5 10.5 135 427-565 118-270 (312)
121 3g06_A SSPH2 (leucine-rich rep 99.0 4E-09 1.4E-13 113.8 15.1 113 412-540 44-157 (622)
122 3j0a_A TOLL-like receptor 5; m 99.0 1.2E-09 4E-14 123.3 10.0 125 433-563 7-138 (844)
123 1jl5_A Outer protein YOPM; leu 99.0 4.1E-09 1.4E-13 109.9 13.1 123 430-565 131-254 (454)
124 2o6r_A Variable lymphocyte rec 98.9 3.9E-09 1.3E-13 95.0 11.3 120 416-539 15-139 (177)
125 1jl5_A Outer protein YOPM; leu 98.9 6.5E-09 2.2E-13 108.4 14.6 122 428-564 89-211 (454)
126 3g06_A SSPH2 (leucine-rich rep 98.9 6.2E-09 2.1E-13 112.3 14.4 116 428-558 179-295 (622)
127 3t6q_A CD180 antigen; protein- 98.9 1.9E-09 6.5E-14 117.0 10.2 135 427-565 54-196 (606)
128 1ds9_A Outer arm dynein; leuci 98.9 8.2E-11 2.8E-15 108.3 -0.9 123 431-558 24-151 (198)
129 3g39_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 94.7 9.5 102 454-562 11-116 (170)
130 4ay9_X Follicle-stimulating ho 98.8 7.2E-09 2.4E-13 104.3 9.6 150 414-565 15-219 (350)
131 4ay9_X Follicle-stimulating ho 98.8 1.5E-08 5.2E-13 101.9 9.8 134 428-565 102-241 (350)
132 2ast_B S-phase kinase-associat 98.8 4.1E-09 1.4E-13 105.3 5.2 131 428-561 91-236 (336)
133 2ifg_A High affinity nerve gro 98.8 1.6E-08 5.6E-13 101.4 9.4 81 476-556 28-112 (347)
134 2ast_B S-phase kinase-associat 98.7 2E-09 6.9E-14 107.5 2.0 129 428-559 116-259 (336)
135 2ca6_A RAN GTPase-activating p 98.7 6.2E-09 2.1E-13 106.2 3.7 132 429-562 121-288 (386)
136 2qen_A Walker-type ATPase; unk 98.6 8.9E-08 3E-12 96.0 10.3 107 148-256 7-140 (350)
137 1w5s_A Origin recognition comp 98.6 1.3E-07 4.5E-12 97.2 11.8 104 153-256 22-150 (412)
138 2ca6_A RAN GTPase-activating p 98.6 7.2E-09 2.4E-13 105.8 2.1 131 430-561 159-316 (386)
139 3goz_A Leucine-rich repeat-con 98.6 8E-08 2.8E-12 97.0 7.5 124 431-557 52-206 (362)
140 3goz_A Leucine-rich repeat-con 98.5 5.1E-08 1.8E-12 98.5 5.9 77 480-556 168-262 (362)
141 2ifg_A High affinity nerve gro 98.5 2.5E-07 8.4E-12 92.8 9.4 101 434-537 12-116 (347)
142 2v1u_A Cell division control p 98.4 1.2E-06 4.2E-11 88.9 13.1 104 153-256 19-142 (387)
143 1z7x_W Ribonuclease inhibitor; 98.4 6.1E-08 2.1E-12 101.2 2.8 77 480-556 86-179 (461)
144 2qby_A CDC6 homolog 1, cell di 98.4 6E-07 2.1E-11 91.1 9.4 104 153-256 20-140 (386)
145 1z7x_W Ribonuclease inhibitor; 98.4 5.1E-08 1.7E-12 101.8 1.0 129 429-557 255-408 (461)
146 2qby_B CDC6 homolog 3, cell di 98.4 1.5E-06 5.2E-11 88.3 11.9 103 153-256 20-145 (384)
147 1fnn_A CDC6P, cell division co 98.3 3.4E-06 1.2E-10 85.7 13.5 104 153-256 17-137 (389)
148 2fna_A Conserved hypothetical 98.3 1.3E-06 4.4E-11 87.6 9.2 65 150-218 10-83 (357)
149 1njg_A DNA polymerase III subu 98.3 3.9E-06 1.3E-10 78.9 12.0 46 151-196 21-67 (250)
150 3e4g_A ATP synthase subunit S, 98.2 8.8E-07 3E-11 78.4 4.6 81 480-561 62-153 (176)
151 3te6_A Regulatory protein SIR3 98.2 9.2E-06 3.1E-10 79.3 10.9 102 155-256 22-144 (318)
152 2chg_A Replication factor C sm 98.1 1E-05 3.5E-10 74.9 10.9 46 151-196 15-60 (226)
153 3un9_A NLR family member X1; l 98.1 3.9E-07 1.3E-11 92.1 0.8 128 430-561 101-252 (372)
154 1jbk_A CLPB protein; beta barr 98.1 1.3E-05 4.6E-10 72.1 10.5 45 152-196 21-65 (195)
155 3ogk_B Coronatine-insensitive 97.9 5.6E-06 1.9E-10 89.2 5.3 126 429-557 163-303 (592)
156 3un9_A NLR family member X1; l 97.9 1.7E-06 5.7E-11 87.5 0.5 130 429-561 71-224 (372)
157 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.8E-10 76.1 6.5 80 476-555 167-259 (267)
158 2ra8_A Uncharacterized protein 97.9 1.4E-05 4.8E-10 80.1 6.1 127 428-557 170-317 (362)
159 3sb4_A Hypothetical leucine ri 97.8 2E-05 6.9E-10 78.1 6.9 85 478-565 225-314 (329)
160 1sxj_B Activator 1 37 kDa subu 97.7 7.1E-05 2.4E-09 73.7 9.1 46 151-196 19-64 (323)
161 2p1m_B Transport inhibitor res 97.7 6.3E-06 2.2E-10 88.8 1.6 128 429-558 104-246 (594)
162 3ogk_B Coronatine-insensitive 97.7 1.1E-05 3.7E-10 86.9 3.0 106 450-560 268-390 (592)
163 3sb4_A Hypothetical leucine ri 97.7 4.3E-05 1.5E-09 75.7 6.9 99 451-554 225-328 (329)
164 1io0_A Tropomodulin; LRR prote 97.7 2.7E-05 9.2E-10 70.2 4.4 108 450-557 34-161 (185)
165 3h4m_A Proteasome-activating n 97.6 0.00025 8.5E-09 68.5 10.9 48 149-196 13-73 (285)
166 1iqp_A RFCS; clamp loader, ext 97.6 0.0001 3.6E-09 72.6 7.6 46 151-196 23-68 (327)
167 2p1m_B Transport inhibitor res 97.6 1.4E-05 4.6E-10 86.1 0.9 129 429-557 155-324 (594)
168 3pvs_A Replication-associated 97.5 0.00049 1.7E-08 70.8 11.8 90 150-256 23-118 (447)
169 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.0005 1.7E-08 65.3 10.7 46 151-196 4-61 (262)
170 2p65_A Hypothetical protein PF 97.4 0.00012 4.3E-09 65.4 5.5 45 152-196 21-65 (187)
171 3b9p_A CG5977-PA, isoform A; A 97.4 0.00099 3.4E-08 64.7 11.9 94 150-256 18-125 (297)
172 1hqc_A RUVB; extended AAA-ATPa 97.4 0.0002 6.9E-09 70.5 6.9 46 151-196 10-60 (324)
173 3cf0_A Transitional endoplasmi 97.4 0.0009 3.1E-08 65.2 11.2 93 150-255 12-119 (301)
174 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.001 3.5E-08 65.5 11.4 95 149-256 8-117 (322)
175 1io0_A Tropomodulin; LRR prote 97.3 0.00022 7.5E-09 64.1 5.1 88 473-561 30-136 (185)
176 3d8b_A Fidgetin-like protein 1 97.3 0.00092 3.1E-08 66.8 10.0 46 151-196 82-139 (357)
177 2w58_A DNAI, primosome compone 97.3 0.0012 4.3E-08 59.9 10.0 81 159-255 35-126 (202)
178 1sxj_A Activator 1 95 kDa subu 97.3 0.00027 9.2E-09 74.5 6.2 48 149-196 35-99 (516)
179 3rw6_A Nuclear RNA export fact 97.2 9.5E-05 3.2E-09 70.3 2.4 74 484-558 148-231 (267)
180 3eie_A Vacuolar protein sortin 97.2 0.0013 4.5E-08 64.7 10.4 95 148-255 13-121 (322)
181 2chq_A Replication factor C sm 97.2 0.00043 1.5E-08 67.8 6.8 45 152-196 16-60 (319)
182 3ec2_A DNA replication protein 97.1 0.00084 2.9E-08 59.8 7.4 39 158-196 19-60 (180)
183 2ra8_A Uncharacterized protein 97.1 0.00088 3E-08 66.9 8.2 126 429-561 138-292 (362)
184 3u61_B DNA polymerase accessor 97.1 0.0019 6.4E-08 63.6 10.3 47 150-196 23-70 (324)
185 3vfd_A Spastin; ATPase, microt 97.1 0.002 6.8E-08 65.2 10.8 94 149-255 111-218 (389)
186 3e4g_A ATP synthase subunit S, 97.1 0.00028 9.5E-09 62.3 3.6 60 502-561 61-128 (176)
187 2zan_A Vacuolar protein sortin 97.1 0.0023 7.8E-08 65.9 10.9 95 149-256 130-239 (444)
188 3pfi_A Holliday junction ATP-d 97.1 0.0013 4.5E-08 65.1 8.7 46 151-196 27-77 (338)
189 4b4t_L 26S protease subunit RP 97.0 0.0043 1.5E-07 63.1 11.9 95 148-255 176-285 (437)
190 4b4t_J 26S protease regulatory 97.0 0.0019 6.4E-08 64.7 8.7 97 147-256 142-253 (405)
191 2qp9_X Vacuolar protein sortin 96.9 0.0013 4.6E-08 65.5 7.6 93 150-255 48-154 (355)
192 1qvr_A CLPB protein; coiled co 96.9 0.0019 6.6E-08 72.4 9.5 47 150-196 167-213 (854)
193 1d2n_A N-ethylmaleimide-sensit 96.9 0.0027 9.2E-08 60.7 9.3 43 154-196 34-86 (272)
194 4b4t_H 26S protease regulatory 96.9 0.0056 1.9E-07 62.2 11.6 96 148-256 204-314 (467)
195 4b4t_M 26S protease regulatory 96.9 0.0048 1.6E-07 62.7 10.9 95 147-254 175-284 (434)
196 1lv7_A FTSH; alpha/beta domain 96.8 0.0045 1.5E-07 58.6 10.0 47 150-196 9-67 (257)
197 4b4t_K 26S protease regulatory 96.8 0.0067 2.3E-07 61.5 11.6 96 147-255 166-276 (428)
198 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0041 1.4E-07 68.9 10.8 46 151-196 184-229 (758)
199 4b4t_I 26S protease regulatory 96.8 0.006 2E-07 61.4 10.5 96 147-255 176-286 (437)
200 3bos_A Putative DNA replicatio 96.6 0.0038 1.3E-07 58.1 7.6 54 152-205 27-90 (242)
201 2x8a_A Nuclear valosin-contain 96.6 0.013 4.3E-07 56.1 11.2 47 150-196 7-66 (274)
202 3n70_A Transport activator; si 96.6 0.0016 5.5E-08 55.7 4.2 43 154-196 2-46 (145)
203 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.003 1E-07 61.1 6.3 66 174-256 123-194 (331)
204 3pxg_A Negative regulator of g 96.6 0.0023 7.8E-08 66.4 6.0 46 151-196 178-223 (468)
205 3hu3_A Transitional endoplasmi 96.5 0.0089 3E-07 62.1 10.2 46 151-196 202-260 (489)
206 4fcw_A Chaperone protein CLPB; 96.5 0.0046 1.6E-07 60.3 7.2 43 154-196 18-69 (311)
207 4fdw_A Leucine rich hypothetic 96.4 0.0077 2.6E-07 61.1 8.7 90 470-564 240-338 (401)
208 1l8q_A Chromosomal replication 96.4 0.0084 2.9E-07 58.9 8.5 38 159-196 20-59 (324)
209 2ce7_A Cell division protein F 96.4 0.015 5.2E-07 59.9 10.6 46 151-196 14-71 (476)
210 3hr8_A Protein RECA; alpha and 96.3 0.014 4.9E-07 57.7 9.9 79 173-256 60-151 (356)
211 2z4s_A Chromosomal replication 96.3 0.01 3.5E-07 60.9 9.1 36 161-196 116-152 (440)
212 1sxj_D Activator 1 41 kDa subu 96.3 0.0021 7.3E-08 63.9 3.8 47 150-196 34-80 (353)
213 3t15_A Ribulose bisphosphate c 96.2 0.007 2.4E-07 58.5 6.9 24 173-196 35-58 (293)
214 1jr3_A DNA polymerase III subu 96.2 0.0057 1.9E-07 61.3 6.4 45 152-196 15-60 (373)
215 4fdw_A Leucine rich hypothetic 96.2 0.015 5.1E-07 58.9 9.5 86 468-556 260-354 (401)
216 3co5_A Putative two-component 96.2 0.0022 7.4E-08 54.8 2.6 43 154-196 5-49 (143)
217 2c9o_A RUVB-like 1; hexameric 96.1 0.0076 2.6E-07 62.3 7.2 53 152-204 36-97 (456)
218 1rz3_A Hypothetical protein rb 96.0 0.0078 2.7E-07 54.6 5.8 40 157-196 2-44 (201)
219 2zr9_A Protein RECA, recombina 96.0 0.023 8E-07 56.2 9.4 78 173-255 60-150 (349)
220 3syl_A Protein CBBX; photosynt 96.0 0.0077 2.6E-07 58.6 5.9 43 154-196 32-89 (309)
221 2cvh_A DNA repair and recombin 96.0 0.022 7.4E-07 52.1 8.7 41 173-213 19-63 (220)
222 1n0w_A DNA repair protein RAD5 96.0 0.03 1E-06 52.1 9.7 82 173-255 23-130 (243)
223 1sxj_E Activator 1 40 kDa subu 95.9 0.0042 1.4E-07 61.8 3.9 45 152-196 13-58 (354)
224 1sxj_C Activator 1 40 kDa subu 95.9 0.0066 2.3E-07 60.1 5.3 46 151-196 23-68 (340)
225 3cf2_A TER ATPase, transitiona 95.9 0.011 3.9E-07 64.6 7.3 91 152-255 203-308 (806)
226 3pxi_A Negative regulator of g 95.9 0.0074 2.5E-07 66.7 6.0 46 151-196 178-223 (758)
227 3uk6_A RUVB-like 2; hexameric 95.8 0.0079 2.7E-07 60.1 5.5 45 152-196 43-92 (368)
228 2i1q_A DNA repair and recombin 95.8 0.036 1.2E-06 54.2 10.0 81 173-254 97-214 (322)
229 1in4_A RUVB, holliday junction 95.8 0.0073 2.5E-07 59.6 4.7 46 151-196 23-73 (334)
230 3c8u_A Fructokinase; YP_612366 95.7 0.0094 3.2E-07 54.3 5.0 37 160-196 6-44 (208)
231 1xp8_A RECA protein, recombina 95.7 0.039 1.3E-06 54.9 9.7 78 173-255 73-163 (366)
232 3io5_A Recombination and repai 95.7 0.05 1.7E-06 52.4 9.8 76 176-256 30-123 (333)
233 1v5w_A DMC1, meiotic recombina 95.7 0.049 1.7E-06 53.8 10.3 82 173-255 121-230 (343)
234 1ypw_A Transitional endoplasmi 95.6 0.019 6.4E-07 63.7 7.9 45 152-196 203-260 (806)
235 2z43_A DNA repair and recombin 95.6 0.034 1.2E-06 54.5 9.0 82 173-255 106-214 (324)
236 1u94_A RECA protein, recombina 95.6 0.035 1.2E-06 55.0 9.0 78 173-255 62-152 (356)
237 1ofh_A ATP-dependent HSL prote 95.6 0.01 3.5E-07 57.6 5.1 43 154-196 16-72 (310)
238 1qhx_A CPT, protein (chloramph 95.5 0.0084 2.9E-07 53.0 3.9 29 175-203 4-34 (178)
239 3lda_A DNA repair protein RAD5 95.5 0.043 1.5E-06 55.2 9.3 81 173-254 177-283 (400)
240 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.046 1.6E-06 50.3 8.9 40 174-215 23-69 (235)
241 2bjv_A PSP operon transcriptio 95.3 0.011 3.7E-07 56.2 4.1 44 153-196 6-51 (265)
242 4a74_A DNA repair and recombin 95.3 0.085 2.9E-06 48.4 10.1 81 173-254 24-135 (231)
243 3lw7_A Adenylate kinase relate 95.3 0.009 3.1E-07 52.4 3.1 27 175-202 2-30 (179)
244 1zp6_A Hypothetical protein AT 95.2 0.012 4.2E-07 52.6 3.9 24 173-196 8-31 (191)
245 2dhr_A FTSH; AAA+ protein, hex 95.2 0.067 2.3E-06 55.5 9.9 47 150-196 28-86 (499)
246 1ixz_A ATP-dependent metallopr 95.2 0.027 9.1E-07 53.0 6.2 46 151-196 14-71 (254)
247 1ukz_A Uridylate kinase; trans 95.1 0.069 2.4E-06 48.1 8.7 30 173-202 14-45 (203)
248 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.7E-07 51.8 3.1 22 175-196 2-23 (173)
249 3vaa_A Shikimate kinase, SK; s 95.0 0.013 4.3E-07 53.0 3.4 24 173-196 24-47 (199)
250 2r62_A Cell division protease 95.0 0.0088 3E-07 56.9 2.4 45 152-196 10-66 (268)
251 3rfe_A Platelet glycoprotein I 95.0 0.035 1.2E-06 46.3 5.6 44 469-515 24-68 (130)
252 2ga8_A Hypothetical 39.9 kDa p 94.9 0.029 9.8E-07 55.1 5.8 40 157-196 3-46 (359)
253 1g8p_A Magnesium-chelatase 38 94.9 0.012 4.2E-07 58.2 3.2 46 151-196 22-67 (350)
254 2r44_A Uncharacterized protein 94.9 0.039 1.3E-06 54.1 6.8 42 153-196 27-68 (331)
255 1ly1_A Polynucleotide kinase; 94.9 0.015 5E-07 51.4 3.3 30 175-204 3-33 (181)
256 1iy2_A ATP-dependent metallopr 94.9 0.036 1.2E-06 53.0 6.3 48 149-196 36-95 (278)
257 3uie_A Adenylyl-sulfate kinase 94.9 0.018 6.1E-07 52.1 3.9 26 171-196 22-47 (200)
258 2gno_A DNA polymerase III, gam 94.8 0.066 2.3E-06 51.8 8.1 39 158-196 2-40 (305)
259 1kag_A SKI, shikimate kinase I 94.8 0.012 4.2E-07 51.6 2.6 27 175-201 5-33 (173)
260 2hf9_A Probable hydrogenase ni 94.8 0.033 1.1E-06 51.2 5.5 35 162-196 26-60 (226)
261 4eun_A Thermoresistant glucoki 94.8 0.017 5.8E-07 52.2 3.5 31 172-202 27-59 (200)
262 1kgd_A CASK, peripheral plasma 94.7 0.016 5.4E-07 51.4 3.1 23 174-196 5-27 (180)
263 1gvn_B Zeta; postsegregational 94.7 0.029 9.8E-07 54.0 5.1 33 173-205 32-66 (287)
264 1ojl_A Transcriptional regulat 94.7 0.022 7.6E-07 55.3 4.4 43 154-196 3-47 (304)
265 2wsm_A Hydrogenase expression/ 94.7 0.026 8.8E-07 51.7 4.5 40 157-196 13-52 (221)
266 3trf_A Shikimate kinase, SK; a 94.7 0.017 5.7E-07 51.4 3.2 23 174-196 5-27 (185)
267 3m6a_A ATP-dependent protease 94.6 0.066 2.3E-06 56.4 8.1 43 154-196 82-130 (543)
268 1zuh_A Shikimate kinase; alpha 94.6 0.018 6.1E-07 50.3 3.1 24 173-196 6-29 (168)
269 4gp7_A Metallophosphoesterase; 94.6 0.019 6.5E-07 50.5 3.3 24 173-196 8-31 (171)
270 1knq_A Gluconate kinase; ALFA/ 94.6 0.022 7.7E-07 50.0 3.7 29 174-202 8-38 (175)
271 3tr0_A Guanylate kinase, GMP k 94.5 0.022 7.4E-07 51.5 3.6 23 174-196 7-29 (205)
272 2rhm_A Putative kinase; P-loop 94.5 0.023 8E-07 50.7 3.8 23 174-196 5-27 (193)
273 1nks_A Adenylate kinase; therm 94.5 0.021 7.2E-07 50.9 3.5 22 175-196 2-23 (194)
274 3t61_A Gluconokinase; PSI-biol 94.5 0.016 5.4E-07 52.5 2.5 29 174-202 18-48 (202)
275 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.037 1.3E-06 57.5 5.6 41 154-196 23-63 (500)
276 3asz_A Uridine kinase; cytidin 94.5 0.024 8.2E-07 51.6 3.8 31 173-203 5-39 (211)
277 1odf_A YGR205W, hypothetical 3 94.4 0.043 1.5E-06 52.7 5.6 25 172-196 29-53 (290)
278 2bdt_A BH3686; alpha-beta prot 94.4 0.022 7.7E-07 50.8 3.4 22 175-196 3-24 (189)
279 2qt1_A Nicotinamide riboside k 94.4 0.027 9.3E-07 51.1 3.9 24 173-196 20-43 (207)
280 1kht_A Adenylate kinase; phosp 94.4 0.022 7.4E-07 50.8 3.2 22 175-196 4-25 (192)
281 1uf9_A TT1252 protein; P-loop, 94.3 0.027 9.3E-07 50.7 3.8 25 172-196 6-30 (203)
282 2if2_A Dephospho-COA kinase; a 94.3 0.023 8E-07 51.3 3.3 28 175-202 2-30 (204)
283 2yvu_A Probable adenylyl-sulfa 94.3 0.025 8.5E-07 50.3 3.4 24 173-196 12-35 (186)
284 3rfe_A Platelet glycoprotein I 94.3 0.064 2.2E-06 44.6 5.7 53 482-536 11-67 (130)
285 2j41_A Guanylate kinase; GMP, 94.3 0.026 8.8E-07 51.1 3.5 23 174-196 6-28 (207)
286 3iij_A Coilin-interacting nucl 94.3 0.021 7.1E-07 50.5 2.8 23 174-196 11-33 (180)
287 2jaq_A Deoxyguanosine kinase; 94.3 0.023 7.9E-07 51.2 3.2 21 176-196 2-22 (205)
288 3tau_A Guanylate kinase, GMP k 94.2 0.026 9.1E-07 51.3 3.5 24 173-196 7-30 (208)
289 3ice_A Transcription terminati 94.2 0.17 5.8E-06 50.1 9.4 94 163-256 162-273 (422)
290 3hws_A ATP-dependent CLP prote 94.2 0.039 1.3E-06 55.0 5.1 42 155-196 17-73 (363)
291 1ye8_A Protein THEP1, hypothet 94.2 0.025 8.7E-07 50.0 3.2 21 176-196 2-22 (178)
292 3a00_A Guanylate kinase, GMP k 94.2 0.02 6.8E-07 51.1 2.5 22 175-196 2-23 (186)
293 3umf_A Adenylate kinase; rossm 94.2 0.12 4E-06 47.3 7.7 32 173-204 28-59 (217)
294 2dr3_A UPF0273 protein PH0284; 94.2 0.17 5.9E-06 46.8 9.2 33 173-205 22-61 (247)
295 1y63_A LMAJ004144AAA protein; 94.2 0.028 9.6E-07 50.0 3.5 25 173-197 9-33 (184)
296 2c95_A Adenylate kinase 1; tra 94.2 0.029 1E-06 50.2 3.6 24 173-196 8-31 (196)
297 2kjq_A DNAA-related protein; s 94.2 0.026 8.9E-07 48.3 3.1 24 173-196 35-58 (149)
298 1r6b_X CLPA protein; AAA+, N-t 94.1 0.074 2.5E-06 58.7 7.5 44 153-196 458-510 (758)
299 2qor_A Guanylate kinase; phosp 94.1 0.023 8E-07 51.4 2.8 24 173-196 11-34 (204)
300 1via_A Shikimate kinase; struc 94.1 0.022 7.7E-07 50.1 2.6 27 175-201 5-33 (175)
301 1jjv_A Dephospho-COA kinase; P 94.0 0.03 1E-06 50.7 3.4 22 175-196 3-24 (206)
302 1sky_E F1-ATPase, F1-ATP synth 94.0 0.21 7E-06 51.0 9.8 81 174-254 151-255 (473)
303 3dm5_A SRP54, signal recogniti 94.0 0.42 1.4E-05 48.4 12.1 24 173-196 99-122 (443)
304 2ze6_A Isopentenyl transferase 94.0 0.028 9.7E-07 52.9 3.3 22 175-196 2-23 (253)
305 1a5t_A Delta prime, HOLB; zinc 94.0 0.16 5.3E-06 49.9 8.8 39 158-196 7-46 (334)
306 1cke_A CK, MSSA, protein (cyti 94.0 0.028 9.5E-07 51.8 3.1 22 175-196 6-27 (227)
307 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.032 1.1E-06 52.8 3.5 23 174-196 4-26 (260)
308 1uj2_A Uridine-cytidine kinase 93.9 0.032 1.1E-06 52.5 3.5 25 172-196 20-44 (252)
309 1tev_A UMP-CMP kinase; ploop, 93.9 0.031 1.1E-06 49.9 3.3 23 174-196 3-25 (196)
310 2iyv_A Shikimate kinase, SK; t 93.9 0.023 7.7E-07 50.5 2.3 22 175-196 3-24 (184)
311 1xjc_A MOBB protein homolog; s 93.9 0.032 1.1E-06 48.7 3.2 24 173-196 3-26 (169)
312 1um8_A ATP-dependent CLP prote 93.9 0.054 1.8E-06 54.3 5.4 23 174-196 72-94 (376)
313 1ex7_A Guanylate kinase; subst 93.9 0.023 7.8E-07 50.6 2.3 30 175-204 2-34 (186)
314 2bwj_A Adenylate kinase 5; pho 93.9 0.032 1.1E-06 50.1 3.3 23 174-196 12-34 (199)
315 1lvg_A Guanylate kinase, GMP k 93.9 0.026 8.9E-07 50.9 2.6 23 174-196 4-26 (198)
316 3cm0_A Adenylate kinase; ATP-b 93.8 0.033 1.1E-06 49.4 3.3 23 174-196 4-26 (186)
317 3aez_A Pantothenate kinase; tr 93.8 0.036 1.2E-06 53.9 3.8 25 172-196 88-112 (312)
318 1e6c_A Shikimate kinase; phosp 93.8 0.026 9.1E-07 49.3 2.5 22 175-196 3-24 (173)
319 1qf9_A UMP/CMP kinase, protein 93.8 0.036 1.2E-06 49.3 3.5 23 174-196 6-28 (194)
320 1htw_A HI0065; nucleotide-bind 93.7 0.042 1.5E-06 47.5 3.7 25 172-196 31-55 (158)
321 2bbw_A Adenylate kinase 4, AK4 93.7 0.036 1.2E-06 51.9 3.5 24 173-196 26-49 (246)
322 3cf2_A TER ATPase, transitiona 93.7 0.062 2.1E-06 58.9 5.7 95 148-255 472-581 (806)
323 1znw_A Guanylate kinase, GMP k 93.7 0.037 1.3E-06 50.2 3.5 24 173-196 19-42 (207)
324 3fwy_A Light-independent proto 93.7 0.037 1.3E-06 53.8 3.6 25 172-196 46-70 (314)
325 3tqc_A Pantothenate kinase; bi 93.7 0.061 2.1E-06 52.3 5.1 24 173-196 91-114 (321)
326 2plr_A DTMP kinase, probable t 93.7 0.039 1.3E-06 50.0 3.5 23 174-196 4-26 (213)
327 2pt5_A Shikimate kinase, SK; a 93.7 0.036 1.2E-06 48.2 3.1 21 176-196 2-22 (168)
328 3tlx_A Adenylate kinase 2; str 93.6 0.09 3.1E-06 49.0 6.0 32 172-203 27-60 (243)
329 2jeo_A Uridine-cytidine kinase 93.6 0.043 1.5E-06 51.3 3.8 25 172-196 23-47 (245)
330 3cmu_A Protein RECA, recombina 93.6 0.12 4E-06 62.0 8.1 77 173-254 1426-1515(2050)
331 2pbr_A DTMP kinase, thymidylat 93.6 0.037 1.3E-06 49.4 3.2 21 176-196 2-22 (195)
332 2grj_A Dephospho-COA kinase; T 93.5 0.039 1.3E-06 49.5 3.2 25 172-196 10-34 (192)
333 1pzn_A RAD51, DNA repair and r 93.5 0.18 6.1E-06 49.8 8.3 82 173-255 130-242 (349)
334 2cdn_A Adenylate kinase; phosp 93.5 0.044 1.5E-06 49.4 3.5 23 174-196 20-42 (201)
335 4e22_A Cytidylate kinase; P-lo 93.5 0.043 1.5E-06 51.6 3.5 24 173-196 26-49 (252)
336 2vli_A Antibiotic resistance p 93.5 0.027 9.3E-07 49.8 2.0 23 174-196 5-27 (183)
337 2p5t_B PEZT; postsegregational 93.5 0.057 2E-06 50.7 4.4 24 173-196 31-54 (253)
338 1z6g_A Guanylate kinase; struc 93.4 0.037 1.2E-06 50.8 2.9 24 173-196 22-45 (218)
339 1aky_A Adenylate kinase; ATP:A 93.4 0.043 1.5E-06 50.3 3.4 23 174-196 4-26 (220)
340 2wwf_A Thymidilate kinase, put 93.4 0.045 1.6E-06 49.6 3.5 23 174-196 10-32 (212)
341 3ney_A 55 kDa erythrocyte memb 93.4 0.046 1.6E-06 49.1 3.3 24 173-196 18-41 (197)
342 1nn5_A Similar to deoxythymidy 93.4 0.049 1.7E-06 49.5 3.7 23 174-196 9-31 (215)
343 1rj9_A FTSY, signal recognitio 93.4 0.046 1.6E-06 52.9 3.6 24 173-196 101-124 (304)
344 1g41_A Heat shock protein HSLU 93.3 0.076 2.6E-06 54.0 5.2 43 154-196 16-72 (444)
345 4akg_A Glutathione S-transfera 93.3 0.76 2.6E-05 57.0 14.6 201 177-396 1270-1537(2695)
346 2pez_A Bifunctional 3'-phospho 93.3 0.052 1.8E-06 47.9 3.5 24 173-196 4-27 (179)
347 1gtv_A TMK, thymidylate kinase 93.3 0.027 9.3E-07 51.3 1.7 22 175-196 1-22 (214)
348 1zd8_A GTP:AMP phosphotransfer 93.2 0.048 1.7E-06 50.2 3.4 23 174-196 7-29 (227)
349 1qvr_A CLPB protein; coiled co 93.1 0.061 2.1E-06 60.2 4.6 43 154-196 559-610 (854)
350 1s96_A Guanylate kinase, GMP k 93.1 0.053 1.8E-06 49.7 3.5 24 173-196 15-38 (219)
351 2ffh_A Protein (FFH); SRP54, s 93.1 0.35 1.2E-05 48.9 9.6 24 173-196 97-120 (425)
352 2f6r_A COA synthase, bifunctio 93.0 0.062 2.1E-06 51.4 3.9 24 173-196 74-97 (281)
353 1m7g_A Adenylylsulfate kinase; 93.0 0.058 2E-06 49.0 3.6 25 172-196 23-47 (211)
354 2ck3_D ATP synthase subunit be 93.0 0.47 1.6E-05 48.3 10.4 91 165-255 143-264 (482)
355 2v54_A DTMP kinase, thymidylat 93.0 0.059 2E-06 48.5 3.5 23 174-196 4-26 (204)
356 2f1r_A Molybdopterin-guanine d 93.0 0.035 1.2E-06 48.7 1.9 23 174-196 2-24 (171)
357 2z0h_A DTMP kinase, thymidylat 93.0 0.052 1.8E-06 48.5 3.2 21 176-196 2-22 (197)
358 3kl4_A SRP54, signal recogniti 92.9 0.39 1.3E-05 48.7 9.8 24 173-196 96-119 (433)
359 2px0_A Flagellar biosynthesis 92.9 0.062 2.1E-06 51.8 3.7 24 173-196 104-127 (296)
360 1zak_A Adenylate kinase; ATP:A 92.9 0.053 1.8E-06 49.7 3.1 23 174-196 5-27 (222)
361 2ehv_A Hypothetical protein PH 92.9 0.055 1.9E-06 50.5 3.2 23 173-195 29-51 (251)
362 1vht_A Dephospho-COA kinase; s 92.9 0.066 2.3E-06 48.9 3.7 29 174-202 4-33 (218)
363 2onk_A Molybdate/tungstate ABC 92.9 0.06 2E-06 50.1 3.4 24 172-196 23-46 (240)
364 1sq5_A Pantothenate kinase; P- 92.9 0.067 2.3E-06 51.9 3.9 25 172-196 78-102 (308)
365 2pcj_A ABC transporter, lipopr 92.8 0.057 1.9E-06 49.7 3.2 24 173-196 29-52 (224)
366 3nwj_A ATSK2; P loop, shikimat 92.8 0.046 1.6E-06 51.2 2.6 23 174-196 48-70 (250)
367 2i3b_A HCR-ntpase, human cance 92.8 0.049 1.7E-06 48.7 2.6 22 175-196 2-23 (189)
368 1fx0_B ATP synthase beta chain 92.8 0.33 1.1E-05 49.6 8.9 89 166-254 156-276 (498)
369 3b9q_A Chloroplast SRP recepto 92.8 0.066 2.2E-06 51.8 3.7 24 173-196 99-122 (302)
370 3tif_A Uncharacterized ABC tra 92.7 0.064 2.2E-06 49.8 3.4 24 173-196 30-53 (235)
371 3fb4_A Adenylate kinase; psych 92.6 0.062 2.1E-06 49.0 3.2 21 176-196 2-22 (216)
372 3l0o_A Transcription terminati 92.6 0.41 1.4E-05 47.3 9.0 35 162-196 162-197 (427)
373 2zts_A Putative uncharacterize 92.6 0.3 1E-05 45.3 8.0 42 173-216 29-78 (251)
374 3lnc_A Guanylate kinase, GMP k 92.6 0.046 1.6E-06 50.5 2.2 24 173-196 26-50 (231)
375 2j37_W Signal recognition part 92.6 0.95 3.2E-05 46.8 12.2 24 173-196 100-123 (504)
376 2cbz_A Multidrug resistance-as 92.5 0.07 2.4E-06 49.6 3.4 24 173-196 30-53 (237)
377 3p32_A Probable GTPase RV1496/ 92.5 0.14 4.7E-06 50.8 5.8 35 162-196 65-101 (355)
378 2qgz_A Helicase loader, putati 92.5 0.11 3.9E-06 50.3 5.0 39 158-196 133-174 (308)
379 1b0u_A Histidine permease; ABC 92.4 0.072 2.5E-06 50.3 3.4 24 173-196 31-54 (262)
380 3ake_A Cytidylate kinase; CMP 92.4 0.068 2.3E-06 48.2 3.2 21 176-196 4-24 (208)
381 3dl0_A Adenylate kinase; phosp 92.4 0.068 2.3E-06 48.7 3.2 21 176-196 2-22 (216)
382 1np6_A Molybdopterin-guanine d 92.4 0.075 2.6E-06 46.7 3.2 23 174-196 6-28 (174)
383 1j8m_F SRP54, signal recogniti 92.4 0.43 1.5E-05 45.8 8.9 23 174-196 98-120 (297)
384 3hjn_A DTMP kinase, thymidylat 92.3 0.43 1.5E-05 42.8 8.3 21 176-196 2-22 (197)
385 3sr0_A Adenylate kinase; phosp 92.3 0.068 2.3E-06 48.4 3.0 29 176-204 2-30 (206)
386 3bh0_A DNAB-like replicative h 92.3 0.84 2.9E-05 44.2 11.0 44 173-218 67-117 (315)
387 3be4_A Adenylate kinase; malar 92.3 0.07 2.4E-06 48.8 3.1 23 174-196 5-27 (217)
388 2olj_A Amino acid ABC transpor 92.3 0.077 2.6E-06 50.1 3.4 25 172-196 48-72 (263)
389 3b85_A Phosphate starvation-in 92.2 0.058 2E-06 49.0 2.4 22 174-195 22-43 (208)
390 3gfo_A Cobalt import ATP-bindi 92.2 0.071 2.4E-06 50.7 3.1 24 173-196 33-56 (275)
391 3k1j_A LON protease, ATP-depen 92.2 0.11 3.7E-06 55.6 4.9 43 152-196 40-82 (604)
392 1mv5_A LMRA, multidrug resista 92.2 0.086 3E-06 49.2 3.6 24 173-196 27-50 (243)
393 1ji0_A ABC transporter; ATP bi 92.1 0.074 2.5E-06 49.5 3.1 24 173-196 31-54 (240)
394 1vma_A Cell division protein F 92.1 0.089 3E-06 50.9 3.7 24 173-196 103-126 (306)
395 1vpl_A ABC transporter, ATP-bi 92.1 0.084 2.9E-06 49.6 3.4 24 173-196 40-63 (256)
396 3zvl_A Bifunctional polynucleo 92.1 0.15 5E-06 51.8 5.4 33 172-204 256-288 (416)
397 2zu0_C Probable ATP-dependent 92.0 0.09 3.1E-06 49.8 3.6 25 172-196 44-68 (267)
398 2pze_A Cystic fibrosis transme 92.0 0.078 2.7E-06 49.0 3.1 24 173-196 33-56 (229)
399 1g6h_A High-affinity branched- 92.0 0.077 2.6E-06 50.0 3.1 24 173-196 32-55 (257)
400 2yhs_A FTSY, cell division pro 92.0 0.17 5.7E-06 52.0 5.7 24 173-196 292-315 (503)
401 2d2e_A SUFC protein; ABC-ATPas 92.0 0.082 2.8E-06 49.5 3.2 24 173-196 28-51 (250)
402 1sgw_A Putative ABC transporte 92.0 0.066 2.3E-06 48.8 2.5 24 173-196 34-57 (214)
403 4g1u_C Hemin import ATP-bindin 92.0 0.078 2.7E-06 50.2 3.1 24 173-196 36-59 (266)
404 3e70_C DPA, signal recognition 92.0 0.096 3.3E-06 51.2 3.8 25 172-196 127-151 (328)
405 2og2_A Putative signal recogni 92.0 0.092 3.1E-06 51.9 3.7 24 173-196 156-179 (359)
406 3crm_A TRNA delta(2)-isopenten 91.9 0.14 4.7E-06 49.7 4.7 29 175-203 6-36 (323)
407 2ghi_A Transport protein; mult 91.9 0.091 3.1E-06 49.6 3.4 24 173-196 45-68 (260)
408 1e4v_A Adenylate kinase; trans 91.9 0.09 3.1E-06 47.9 3.3 21 176-196 2-22 (214)
409 1tue_A Replication protein E1; 91.9 0.12 4.2E-06 46.3 4.0 35 162-196 45-80 (212)
410 2ff7_A Alpha-hemolysin translo 91.9 0.083 2.8E-06 49.4 3.1 24 173-196 34-57 (247)
411 3d3q_A TRNA delta(2)-isopenten 91.9 0.088 3E-06 51.4 3.3 29 175-203 8-38 (340)
412 2ixe_A Antigen peptide transpo 91.9 0.093 3.2E-06 49.8 3.4 25 172-196 43-67 (271)
413 3r20_A Cytidylate kinase; stru 91.8 0.089 3.1E-06 48.6 3.1 23 174-196 9-31 (233)
414 1pgv_A TMD-1, tropomodulin TMD 91.8 0.18 6.1E-06 45.1 5.0 105 451-557 40-167 (197)
415 4a1f_A DNAB helicase, replicat 91.8 0.93 3.2E-05 44.2 10.6 44 173-218 45-95 (338)
416 2xb4_A Adenylate kinase; ATP-b 91.8 0.089 3.1E-06 48.3 3.2 21 176-196 2-22 (223)
417 2yz2_A Putative ABC transporte 91.8 0.096 3.3E-06 49.6 3.4 24 173-196 32-55 (266)
418 1ak2_A Adenylate kinase isoenz 91.7 0.1 3.5E-06 48.2 3.5 29 174-202 16-46 (233)
419 3end_A Light-independent proto 91.7 0.18 6.2E-06 48.7 5.4 35 171-205 38-79 (307)
420 2vp4_A Deoxynucleoside kinase; 91.6 0.091 3.1E-06 48.5 3.0 24 173-196 19-42 (230)
421 2b8t_A Thymidine kinase; deoxy 91.6 0.075 2.6E-06 48.7 2.4 25 172-196 10-34 (223)
422 2qi9_C Vitamin B12 import ATP- 91.6 0.093 3.2E-06 49.1 3.1 24 173-196 25-48 (249)
423 1yrb_A ATP(GTP)binding protein 91.6 0.11 3.7E-06 48.9 3.6 23 173-195 13-35 (262)
424 1zu4_A FTSY; GTPase, signal re 91.6 0.11 3.8E-06 50.6 3.6 24 173-196 104-127 (320)
425 3pxi_A Negative regulator of g 91.5 0.19 6.6E-06 55.4 6.0 44 153-196 491-543 (758)
426 1oix_A RAS-related protein RAB 91.5 0.11 3.6E-06 46.4 3.3 23 174-196 29-51 (191)
427 1ltq_A Polynucleotide kinase; 91.5 0.1 3.4E-06 50.4 3.3 22 175-196 3-24 (301)
428 2ihy_A ABC transporter, ATP-bi 91.5 0.096 3.3E-06 50.0 3.1 24 173-196 46-69 (279)
429 2nq2_C Hypothetical ABC transp 91.4 0.097 3.3E-06 49.1 3.0 24 173-196 30-53 (253)
430 1pgv_A TMD-1, tropomodulin TMD 91.3 0.12 4.2E-06 46.2 3.4 84 451-534 69-167 (197)
431 2v9p_A Replication protein E1; 91.3 0.12 4E-06 49.9 3.4 25 172-196 124-148 (305)
432 1nlf_A Regulatory protein REPA 91.2 0.11 3.8E-06 49.5 3.3 24 173-196 29-52 (279)
433 1a7j_A Phosphoribulokinase; tr 91.2 0.061 2.1E-06 51.7 1.4 24 173-196 4-27 (290)
434 3gmt_A Adenylate kinase; ssgci 91.1 0.23 8E-06 45.5 5.2 22 175-196 9-30 (230)
435 1q3t_A Cytidylate kinase; nucl 91.1 0.13 4.5E-06 47.6 3.5 24 173-196 15-38 (236)
436 4h09_A Hypothetical leucine ri 91.0 0.43 1.5E-05 47.5 7.6 99 450-554 238-340 (379)
437 2eyu_A Twitching motility prot 91.0 0.14 4.8E-06 48.3 3.7 25 172-196 23-47 (261)
438 2zej_A Dardarin, leucine-rich 91.0 0.11 3.7E-06 45.9 2.8 21 176-196 4-24 (184)
439 1cr0_A DNA primase/helicase; R 91.0 0.14 4.7E-06 49.3 3.7 24 173-196 34-57 (296)
440 2wji_A Ferrous iron transport 90.9 0.14 4.9E-06 44.2 3.4 22 175-196 4-25 (165)
441 1ls1_A Signal recognition part 90.9 0.14 4.6E-06 49.4 3.5 24 173-196 97-120 (295)
442 3vkg_A Dynein heavy chain, cyt 90.9 0.94 3.2E-05 56.9 11.5 192 177-396 1307-1575(3245)
443 2q6t_A DNAB replication FORK h 90.9 1.1 3.7E-05 45.8 10.5 44 173-218 199-250 (444)
444 2dyk_A GTP-binding protein; GT 90.8 0.15 5E-06 43.5 3.4 22 175-196 2-23 (161)
445 3sop_A Neuronal-specific septi 90.8 0.13 4.6E-06 48.7 3.3 21 176-196 4-24 (270)
446 2bbs_A Cystic fibrosis transme 90.8 0.14 4.9E-06 49.0 3.5 24 173-196 63-86 (290)
447 3a8t_A Adenylate isopentenyltr 90.8 0.14 4.7E-06 49.9 3.4 23 174-196 40-62 (339)
448 2f9l_A RAB11B, member RAS onco 90.7 0.12 4.2E-06 46.2 2.9 22 175-196 6-27 (199)
449 2pjz_A Hypothetical protein ST 90.7 0.13 4.3E-06 48.6 3.1 23 174-196 30-52 (263)
450 2ocp_A DGK, deoxyguanosine kin 90.7 0.16 5.4E-06 47.2 3.7 23 174-196 2-24 (241)
451 1tq4_A IIGP1, interferon-induc 90.6 0.22 7.5E-06 50.2 4.9 24 173-196 68-91 (413)
452 1svm_A Large T antigen; AAA+ f 90.6 0.29 9.8E-06 48.7 5.7 25 172-196 167-191 (377)
453 3kta_A Chromosome segregation 90.6 0.15 5.2E-06 44.8 3.4 22 175-196 27-48 (182)
454 4eaq_A DTMP kinase, thymidylat 90.6 0.17 5.7E-06 46.7 3.7 24 173-196 25-48 (229)
455 1nij_A Hypothetical protein YJ 90.6 0.13 4.6E-06 50.0 3.2 24 173-196 3-26 (318)
456 3nh6_A ATP-binding cassette SU 90.5 0.11 3.9E-06 50.1 2.6 25 172-196 78-102 (306)
457 3cmw_A Protein RECA, recombina 90.5 0.48 1.6E-05 56.1 8.2 79 173-256 382-473 (1706)
458 3exa_A TRNA delta(2)-isopenten 90.5 0.15 5.1E-06 49.1 3.3 23 174-196 3-25 (322)
459 2xxa_A Signal recognition part 90.3 0.17 5.7E-06 51.5 3.7 24 173-196 99-122 (433)
460 2ce2_X GTPase HRAS; signaling 90.3 0.15 5.3E-06 43.5 3.1 21 176-196 5-25 (166)
461 2r6a_A DNAB helicase, replicat 90.3 1.1 3.6E-05 46.0 9.8 42 173-216 202-251 (454)
462 2ged_A SR-beta, signal recogni 90.2 0.29 1E-05 43.2 5.0 24 173-196 47-70 (193)
463 1zj6_A ADP-ribosylation factor 90.2 0.35 1.2E-05 42.5 5.5 34 162-196 5-38 (187)
464 2afh_E Nitrogenase iron protei 90.2 0.18 6.2E-06 48.2 3.7 23 174-196 2-24 (289)
465 3upu_A ATP-dependent DNA helic 90.2 0.32 1.1E-05 50.0 5.9 39 157-196 29-67 (459)
466 3f9v_A Minichromosome maintena 90.2 0.12 4E-06 55.2 2.5 43 154-196 296-349 (595)
467 2qe7_A ATP synthase subunit al 90.1 0.73 2.5E-05 47.1 8.2 91 165-255 152-265 (502)
468 2wjg_A FEOB, ferrous iron tran 90.1 0.17 5.8E-06 44.5 3.3 23 175-197 8-30 (188)
469 1cp2_A CP2, nitrogenase iron p 90.0 0.18 6.1E-06 47.6 3.5 22 175-196 2-23 (269)
470 3bgw_A DNAB-like replicative h 90.0 1.3 4.3E-05 45.2 10.0 32 173-204 196-234 (444)
471 3fvq_A Fe(3+) IONS import ATP- 90.0 0.19 6.5E-06 49.5 3.7 24 173-196 29-52 (359)
472 1moz_A ARL1, ADP-ribosylation 89.9 0.2 6.8E-06 43.8 3.5 35 164-198 7-42 (183)
473 3tui_C Methionine import ATP-b 89.9 0.19 6.4E-06 49.7 3.6 25 172-196 52-76 (366)
474 1g8f_A Sulfate adenylyltransfe 89.9 0.26 9E-06 51.0 4.8 42 155-196 374-417 (511)
475 1z2a_A RAS-related protein RAB 89.8 0.17 5.8E-06 43.4 2.9 22 175-196 6-27 (168)
476 4fs7_A Uncharacterized protein 89.8 0.75 2.6E-05 46.0 8.2 126 430-563 253-393 (394)
477 1f6b_A SAR1; gtpases, N-termin 89.8 0.29 9.8E-06 43.8 4.5 32 165-196 15-47 (198)
478 3foz_A TRNA delta(2)-isopenten 89.8 0.18 6.3E-06 48.3 3.3 31 173-203 9-41 (316)
479 2r9v_A ATP synthase subunit al 89.7 0.64 2.2E-05 47.6 7.4 91 165-255 165-278 (515)
480 3con_A GTPase NRAS; structural 89.7 0.17 5.8E-06 44.7 2.9 22 175-196 22-43 (190)
481 3cmw_A Protein RECA, recombina 89.7 0.82 2.8E-05 54.1 9.2 78 173-255 1430-1520(1706)
482 3cmu_A Protein RECA, recombina 89.7 0.6 2.1E-05 56.0 8.1 78 173-255 382-472 (2050)
483 2gj8_A MNME, tRNA modification 89.6 0.19 6.6E-06 43.7 3.2 22 175-196 5-26 (172)
484 2nzj_A GTP-binding protein REM 89.6 0.18 6.2E-06 43.6 3.0 22 175-196 5-26 (175)
485 3cr8_A Sulfate adenylyltranfer 89.6 0.28 9.7E-06 51.4 4.8 24 173-196 368-391 (552)
486 1q57_A DNA primase/helicase; d 89.6 0.89 3E-05 47.3 8.7 43 173-217 241-291 (503)
487 1fzq_A ADP-ribosylation factor 89.5 0.26 8.8E-06 43.3 4.0 25 172-196 14-38 (181)
488 1p5z_B DCK, deoxycytidine kina 89.5 0.14 4.9E-06 48.2 2.4 24 173-196 23-46 (263)
489 2www_A Methylmalonic aciduria 89.4 0.41 1.4E-05 47.2 5.7 24 173-196 73-96 (349)
490 3fkq_A NTRC-like two-domain pr 89.4 0.74 2.5E-05 45.8 7.7 55 156-210 113-187 (373)
491 2erx_A GTP-binding protein DI- 89.2 0.2 7E-06 43.1 3.0 21 176-196 5-25 (172)
492 1z47_A CYSA, putative ABC-tran 89.2 0.2 6.9E-06 49.4 3.2 24 173-196 40-63 (355)
493 3q72_A GTP-binding protein RAD 89.2 0.19 6.6E-06 43.1 2.8 21 176-196 4-24 (166)
494 1u8z_A RAS-related protein RAL 89.2 0.2 6.9E-06 42.9 2.9 22 175-196 5-26 (168)
495 2yyz_A Sugar ABC transporter, 89.2 0.23 7.8E-06 49.1 3.6 24 173-196 28-51 (359)
496 2qm8_A GTPase/ATPase; G protei 89.2 0.37 1.3E-05 47.2 5.1 26 171-196 52-77 (337)
497 3iqw_A Tail-anchored protein t 89.1 0.44 1.5E-05 46.6 5.6 38 171-208 13-57 (334)
498 3jvv_A Twitching mobility prot 89.1 0.31 1.1E-05 48.1 4.5 25 172-196 121-145 (356)
499 3q85_A GTP-binding protein REM 89.1 0.21 7.3E-06 42.9 3.0 21 176-196 4-24 (169)
500 2qmh_A HPR kinase/phosphorylas 89.1 0.22 7.7E-06 44.4 3.1 24 173-196 33-56 (205)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=1.6e-30 Score=278.83 Aligned_cols=237 Identities=12% Similarity=0.049 Sum_probs=161.0
Q ss_pred cchHHHHHHHHHHHhcC---CceEEEEEecCCCcHHHHHHHHhc-----------ceEEEEeccCC--CHHHHHHHHHHH
Q 045507 156 ESRLSTLKAIQNALSDL---NVSIIGVYGMGGIGKTTLVKEVAR-----------KVDFSEVSQNP--NIKIIQGDIAEK 219 (566)
Q Consensus 156 ~gr~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~-----------~~~wv~v~~~~--~~~~i~~~i~~~ 219 (566)
+||+.++++|.++|... ..++|+|+||||+||||||+++|+ .++|+++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999743 689999999999999999999992 67999999985 899999999999
Q ss_pred cCCCCc--------ccchHHHHHHHHHHHhcCCeEEEEEeCCCCccc--cccccc-----ccC------CCCCC-C----
Q 045507 220 LGLVSC--------EKVETRRANRLYERLKREKKILIVLDNIWKHVD--LESIGI-----PFG------DEHKG-Y---- 273 (566)
Q Consensus 220 l~~~~~--------~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~~~~-----~~~------~~~~g-~---- 273 (566)
++.... ..+.......+++.|..+|||||||||||+..+ |..... ..+ ..... .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l 290 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEV 290 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEEC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEEC
Confidence 986522 112334567888888752499999999999864 432100 000 00000 0
Q ss_pred -----------------ccccCccchHHHHHHHHHhCCCchHHHHHHHHhhcCCHHHHHHHHHH-HhccCCCCccchhhh
Q 045507 274 -----------------DDVENLKLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALRE-LRIRTPSVVNFEKVR 335 (566)
Q Consensus 274 -----------------~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~-l~~~~~~~~~~~~~~ 335 (566)
.....+.+.+++++|+++|+|+||||+++|+.|+.++. +|...+.. +.... .
T Consensus 291 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~---------~ 360 (549)
T 2a5y_B 291 TSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG---------L 360 (549)
T ss_dssp CCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC---------S
T ss_pred CCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc---------H
Confidence 11112566789999999999999999999999987743 33333332 21111 1
Q ss_pred hhhhhhHHhhhc------------------------cCCCCCCcchhhHHHHHHhhh--ccccccc---cHHHHHHHHHH
Q 045507 336 AGCVRATEETFS------------------------ALYSSGIFYFNFILFKCCMGL--GILQRAN---KMEDAYNKLHA 386 (566)
Q Consensus 336 ~~~~~~l~lsy~------------------------~l~~p~~~~~~~~L~~~wia~--g~~~~~~---~~~~~~~~~~~ 386 (566)
.++.+++.+||+ ++| |+++.|. +++|+|+ ||+.... +.+++ +.
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~f-p~~~~i~---i~~w~a~~~G~i~~~~~~~~~~~~---~~- 432 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVM-PPGVDIP---VKLWSCVIPVDICSNEEEQLDDEV---AD- 432 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSS-CTTCCEE---HHHHHHHSCC-------CCCTHHH---HH-
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeee-CCCCeee---eeeeeeeccceeccCCCCCCHHHH---HH-
Confidence 223444444443 566 8999994 8999999 9997532 33433 33
Q ss_pred HHHHHhhhchhh----------------HHHHHHhhcccC
Q 045507 387 LLHELKDSCLLV----------------EDVAISIACRDQ 410 (566)
Q Consensus 387 li~~L~~~~ll~----------------~dl~~~~~~~e~ 410 (566)
+|++|+++||++ ||+|++++.+++
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 799999999986 666666665543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=1.8e-24 Score=255.11 Aligned_cols=236 Identities=19% Similarity=0.282 Sum_probs=170.0
Q ss_pred CCCCCCccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc-----------ceEEEEeccCCC--HHHHH
Q 045507 149 HKGYESFESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR-----------KVDFSEVSQNPN--IKIIQ 213 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~-----------~~~wv~v~~~~~--~~~i~ 213 (566)
+.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|+ .++|+++++.++ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4455679999999999999996 46789999999999999999999987 467999998644 44456
Q ss_pred HHHHHHcCCCCc-----ccchHHHHHHHHHHHhc-CCeEEEEEeCCCCccccccccccc------CCCC-----CCC---
Q 045507 214 GDIAEKLGLVSC-----EKVETRRANRLYERLKR-EKKILIVLDNIWKHVDLESIGIPF------GDEH-----KGY--- 273 (566)
Q Consensus 214 ~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~~~~~~------~~~~-----~g~--- 273 (566)
..++..+..... ..........++..+.. +|||||||||||+...|..+.... +... .+.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~ 279 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHV 279 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCC
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceE
Confidence 677777765432 12334556666666653 249999999999998877653211 0000 000
Q ss_pred -------------------ccccCccchHHHHHHHHHhCCCchHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc--cch
Q 045507 274 -------------------DDVENLKLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALRELRIRTPSVV--NFE 332 (566)
Q Consensus 274 -------------------~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~--~~~ 332 (566)
.....+.+.+.+++|+++|+|+||||+++|++|+.++ .+|...++.+........ ...
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~ 358 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSS 358 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTC
T ss_pred EEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccc
Confidence 0122344567899999999999999999999999776 479999998865543222 111
Q ss_pred hhhhhhhhhHHhhhc-------------cCCCCCCcchh-hHHHHHHhhhccccccccHHHHHHHHHHHHHHHhhhchhh
Q 045507 333 KVRAGCVRATEETFS-------------ALYSSGIFYFN-FILFKCCMGLGILQRANKMEDAYNKLHALLHELKDSCLLV 398 (566)
Q Consensus 333 ~~~~~~~~~l~lsy~-------------~l~~p~~~~~~-~~L~~~wia~g~~~~~~~~~~~~~~~~~li~~L~~~~ll~ 398 (566)
.....+..++.+||+ ++| |+++.|. ..++++|.+++ ..+.+++.+|+++||++
T Consensus 359 ~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f-~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSIL-QKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp TTHHHHHHHHHHHHHTSCTTTHHHHHHGGGS-CTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCE
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHhCcc-CCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceE
Confidence 223578999999999 334 7888776 68888887642 33456799999999986
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=9.5e-23 Score=222.67 Aligned_cols=206 Identities=15% Similarity=0.139 Sum_probs=148.5
Q ss_pred ccchHHHHHHHHHHHhc-CCceEEEEEecCCCcHHHHHHHHhc----------ceEEEEeccCCCHHHHHHHHHHHcCC-
Q 045507 155 FESRLSTLKAIQNALSD-LNVSIIGVYGMGGIGKTTLVKEVAR----------KVDFSEVSQNPNIKIIQGDIAEKLGL- 222 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~----------~~~wv~v~~~~~~~~i~~~i~~~l~~- 222 (566)
.+||+.++++|.++|.. +..++|+|+||||+||||||+++|+ .++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999985 5689999999999999999999995 48999999999988888887764321
Q ss_pred --C----Ccc-----cchHHHHHHHHHHHh--cCCeEEEEEeCCCCcccccccccccCCCCCCC----------------
Q 045507 223 --V----SCE-----KVETRRANRLYERLK--REKKILIVLDNIWKHVDLESIGIPFGDEHKGY---------------- 273 (566)
Q Consensus 223 --~----~~~-----~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g~---------------- 273 (566)
. ... .+.......+++.|. .+||+||||||||+...|+.+. .||
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 1 110 012233455666552 3589999999999988887653 122
Q ss_pred -c-c--cc------C---------------ccchHHHHHHHHHhCCCchHHHHHHHHhhcC--CHHHHHHHHHHHhccCC
Q 045507 274 -D-D--VE------N---------------LKLKSTAIDVAKACGGLPIALTTIGRAMRNK--SVLEWKNALRELRIRTP 326 (566)
Q Consensus 274 -~-~--~~------~---------------~~~~~~~~~i~~~c~glPLai~~~g~~L~~~--~~~~w~~~l~~l~~~~~ 326 (566)
. . .. . ....++. .+.|+|+||||+++|+.|+.+ +..+|...
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~---~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHV--------- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHH---HHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC---------
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHH---HHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC---------
Confidence 0 0 00 0 0011222 234999999999999999977 78889652
Q ss_pred CCccchhhhhhhhhhHHhhhc--------------cCCCCCCcchh-hHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Q 045507 327 SVVNFEKVRAGCVRATEETFS--------------ALYSSGIFYFN-FILFKCCMGLGILQRANKMEDAYNKLHALLHEL 391 (566)
Q Consensus 327 ~~~~~~~~~~~~~~~l~lsy~--------------~l~~p~~~~~~-~~L~~~wia~g~~~~~~~~~~~~~~~~~li~~L 391 (566)
+ ...+..+|.+||+ ++| |+++.|. ..++.+|+++|. + .+.+++++|
T Consensus 351 -~------~~~I~aaLelSYd~Lp~eelK~cFL~LAIF-Ped~~I~~elLa~LW~aeGe-------e----dAe~~L~eL 411 (1221)
T 1vt4_I 351 -N------CDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKL 411 (1221)
T ss_dssp -S------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSS-CTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHH
T ss_pred -C------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCC-CCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHH
Confidence 0 3457778888887 345 6777775 568899998871 1 245679999
Q ss_pred hhhchhh
Q 045507 392 KDSCLLV 398 (566)
Q Consensus 392 ~~~~ll~ 398 (566)
+++||++
T Consensus 412 vdRSLLq 418 (1221)
T 1vt4_I 412 HKYSLVE 418 (1221)
T ss_dssp HTSSSSS
T ss_pred HhhCCEE
Confidence 9999986
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=202.73 Aligned_cols=234 Identities=20% Similarity=0.257 Sum_probs=155.5
Q ss_pred CCCCccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc-----------ceEEEEeccCCCHHHHHHH--
Q 045507 151 GYESFESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR-----------KVDFSEVSQNPNIKIIQGD-- 215 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~-----------~~~wv~v~~~~~~~~i~~~-- 215 (566)
....|+||+.++++|.++|. .++.++|+|+||||+||||||+++|+ .++|++++... ...+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHHHH
Confidence 34579999999999999997 35689999999999999999999975 48999998763 3333333
Q ss_pred -HHHHcCCC-----CcccchHHHHHHHHHHHhc-CCeEEEEEeCCCCccccccccccc------CC-----CCCCC----
Q 045507 216 -IAEKLGLV-----SCEKVETRRANRLYERLKR-EKKILIVLDNIWKHVDLESIGIPF------GD-----EHKGY---- 273 (566)
Q Consensus 216 -i~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~~~~~~------~~-----~~~g~---- 273 (566)
++..++.. ....+.......+...+.. ++++||||||||+...+..+.... +. ...+.
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v 280 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVV 280 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEE
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEe
Confidence 34455421 1122334556667777754 268999999999876665542110 00 00010
Q ss_pred ------------------ccccCccchHHHHHHHHHhCCCchHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc--cchh
Q 045507 274 ------------------DDVENLKLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALRELRIRTPSVV--NFEK 333 (566)
Q Consensus 274 ------------------~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~--~~~~ 333 (566)
.........+.+.+|+++|+|+||||..+|+.|+... .+|..+++.+........ ....
T Consensus 281 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 281 PVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred ecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhcccc
Confidence 0011223456789999999999999999999998763 379888888775432211 0111
Q ss_pred hhhhhhhhHHhhhccCCC------------CCCcchh-hHHHHHHhhhccccccccHHHHHHHHHHHHHHHhhhchhh
Q 045507 334 VRAGCVRATEETFSALYS------------SGIFYFN-FILFKCCMGLGILQRANKMEDAYNKLHALLHELKDSCLLV 398 (566)
Q Consensus 334 ~~~~~~~~l~lsy~~l~~------------p~~~~~~-~~L~~~wia~g~~~~~~~~~~~~~~~~~li~~L~~~~ll~ 398 (566)
....+..++..||+.+.+ |.++.|. ..+..+|.+++ ..+.+++.+|+++||+.
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLF 425 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSE
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeE
Confidence 235688999999994431 4555554 45556665421 23456788999999985
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.48 E-value=2.7e-13 Score=135.51 Aligned_cols=111 Identities=24% Similarity=0.315 Sum_probs=69.2
Q ss_pred CCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC--ccccccCccCcE
Q 045507 451 CPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEI 528 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~ 528 (566)
+++|+.|.+.++. ...+|.. +..+++|++|++++|.+..+|..++.+++|++|++++|.+.. |..++.+.+|++
T Consensus 182 l~~L~~L~L~~n~---l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 182 LVNLQSLRLEWTG---IRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp STTCCEEEEEEEC---CCCCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCCCEEECcCCC---cCcchHh-hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 3444444444332 2244444 356666666666666666666666666667777777666444 566666777777
Q ss_pred EeccCC-CCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 529 LSIWGP-DIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 529 L~l~~~-~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|+|++| ....+|..++.+++|++|++++|+.+..+|.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 777766 4456677777777777777777776666664
No 6
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2.5e-13 Score=121.75 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=114.8
Q ss_pred ccccccEEEeecCCCC--CCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc-CChhhhcccc
Q 045507 428 ALKQCHAISLLNSSIP--ELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS-LPSSIDLLVN 503 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~--~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~ 503 (566)
.+.+++++.++.|.+. .+|.. ..+++|+.|.+.++. ...+ ..+..+++|++|++++|.+.. +|..++.+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 4578999999999987 67766 478999999999876 3444 345789999999999999998 7888888999
Q ss_pred cceeeccCcccCC-c--cccccCccCcEEeccCCCCCccch----hhcCCCCCCEEeccCCCCCccCCC
Q 045507 504 LQILCLHQYMLGD-I--AIIGKLKNLEILSIWGPDIKTLPE----ELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 504 L~~L~L~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|++|++++|.++. | ..++.+++|++|++++|.+..+|. .++.+++|++|++++| .+.++|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 9999999999988 5 789999999999999999998887 7999999999999995 6777775
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=8.7e-13 Score=128.15 Aligned_cols=136 Identities=26% Similarity=0.406 Sum_probs=71.9
Q ss_pred cccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhcccc
Q 045507 425 NEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVN 503 (566)
Q Consensus 425 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~ 503 (566)
......+++++.++.|.+..++....+++|++|.+.++. ...++...+..+++|++|++++|.+..+|.. ++.+++
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ---LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc---cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 334455566666666665555444455566666665553 3344444445555566666655555555432 455555
Q ss_pred cceeeccCcccCC-c-cccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccCC
Q 045507 504 LQILCLHQYMLGD-I-AIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 504 L~~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|++|++++|.+.. | ..++++++|++|++++|.+..+|.. ++.+++|++|++++ +.+..+|
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 197 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVP 197 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCC
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC-CcCCccC
Confidence 5555555555555 2 2245555555555555555554433 35555555555555 3444443
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=1.3e-12 Score=130.50 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=111.5
Q ss_pred cccccccEEEeecCCCCCCCCC-CCCCccceEEecccccccccCCChHH--------HhcCccCcEEEecCCccccCChh
Q 045507 427 DALKQCHAISLLNSSIPELPEG-LECPHLDFLLMVCKDTLIETNIPEKF--------FSRIKKLKDVDMARMWLFSLPSS 497 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~--------~~~l~~Lr~L~l~~~~~~~lp~~ 497 (566)
....+++++.++.|.+..+|.. ..+++|+.|.+.++.. ...+|..+ +..+++|++|++++|.+..+|..
T Consensus 124 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~--~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE--LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETT--CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred hccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCC--ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence 4567888999999888877754 3678899999987655 55666544 23488899999999988888988
Q ss_pred hhcccccceeeccCcccCC-ccccccCccCcEEeccCC-CCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 498 IDLLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGP-DIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 498 i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
++.+++|++|++++|.+.. |+.++++++|++|++++| ....+|..++.+++|++|++++|+.+..+|.
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 9899999999999998888 788888999999999987 4557888889999999999999888888775
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=1.3e-12 Score=123.51 Aligned_cols=137 Identities=21% Similarity=0.257 Sum_probs=116.3
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCC-C-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPE-G-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+.....+|. ..+.+++++.+++|.+..++. . ..+++|+.|.+.++. ...++...|..+++|++|++++|.+..+
T Consensus 28 ~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 28 SKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 333444442 346789999999999987743 2 478999999999887 5778877788999999999999999998
Q ss_pred Chh-hhcccccceeeccCcccCC-ccccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCC
Q 045507 495 PSS-IDLLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNC 557 (566)
Q Consensus 495 p~~-i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c 557 (566)
|.. ++.+++|++|+|++|.+.. |..+..+.+|++|+|++|.+..+|. .+..+++|++|+++++
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 754 6889999999999999999 8999999999999999999999885 4889999999999984
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=1.8e-12 Score=124.34 Aligned_cols=134 Identities=21% Similarity=0.331 Sum_probs=88.0
Q ss_pred ccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNL 504 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L 504 (566)
.+.+++.+.++.|.+..++.. ..+++|++|.+.++. ...++...+..+++|++|++++|.+..+| ..++.+++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 345677777777777655432 356777777777665 34555555566777777777777777665 345667777
Q ss_pred ceeeccCcccCC-cc-ccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCCCCCccCCC
Q 045507 505 QILCLHQYMLGD-IA-IIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 505 ~~L~L~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
++|+|++|.+.. |. .+..+.+|++|+|++|.+..+|. .++.+++|++|++++ +++..+|+
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 172 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPH 172 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCH
Confidence 777777777666 33 35667777777777777766665 466777777777776 45555553
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=122.35 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=115.6
Q ss_pred EeCcccccCCcccccccccEEEeecCCCCCCCC---CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcc
Q 045507 415 VRNEDVWKWPNEDALKQCHAISLLNSSIPELPE---GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWL 491 (566)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~ 491 (566)
+.+.....+|. ..+..++.+.++.|.+..++. ...+++|+.|.+.++. ...++...|..+++|++|++++|.+
T Consensus 18 ~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 18 CSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECCCCcc
Confidence 33444444442 345678999999999987643 2478999999998876 5667766678999999999999999
Q ss_pred ccCCh-hhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCC
Q 045507 492 FSLPS-SIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 492 ~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c 557 (566)
..+|. .++.+++|++|+|++|.+.. |..+..+.+|++|+|++|.+..+ |..++.+++|++|+++++
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 99875 48999999999999999888 67899999999999999999888 778999999999999984
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=1.4e-12 Score=122.27 Aligned_cols=139 Identities=18% Similarity=0.300 Sum_probs=115.3
Q ss_pred EeCcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccc
Q 045507 415 VRNEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF 492 (566)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 492 (566)
+.+..+..+|. ..+.+++.+.+..|.+..++. ...+++|+.|.+.++. ...++...|..+++|++|++++|.+.
T Consensus 18 c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 18 CRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp CTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred cCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 33344444443 345789999999999987764 2468999999999886 45565556689999999999999999
Q ss_pred cCChh-hhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCC
Q 045507 493 SLPSS-IDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNC 557 (566)
Q Consensus 493 ~lp~~-i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c 557 (566)
.+|.. +..+++|++|+|++|.+.. |..+..+.+|++|+|++|.+..+|.. +..+++|++|+++++
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 99865 6889999999999999888 67899999999999999999988764 889999999999984
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=2.9e-12 Score=124.30 Aligned_cols=111 Identities=29% Similarity=0.414 Sum_probs=56.0
Q ss_pred CCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccceeeccCcccCC-cc-ccccCccCc
Q 045507 451 CPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLHQYMLGD-IA-IIGKLKNLE 527 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~-p~-~i~~L~~L~ 527 (566)
+++|++|.+.++. ...++...+..+++|++|++++|.+..+| ..++.+++|++|+|++|.+.. |. .++.+++|+
T Consensus 84 l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 84 LKNLETLWVTDNK---LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CTTCCEEECCSSC---CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCc---CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 3444444444333 23334334444555555555555554443 234555555555555555555 32 245556666
Q ss_pred EEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccCCC
Q 045507 528 ILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 528 ~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|++++|.+..+|.. +..+++|++|++++ +.+..+|.
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 198 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPE 198 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCS-SCCSCCCT
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCC-CcCCcCCH
Confidence 666666555555443 55566666666666 35555543
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=3.5e-12 Score=118.50 Aligned_cols=131 Identities=24% Similarity=0.346 Sum_probs=113.2
Q ss_pred cccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhcccc
Q 045507 427 DALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVN 503 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~ 503 (566)
..+.+++++.++.|.+..++.. ..+++|++|.+.++. ...++...|..+++|++|++++|.+..+|.. ++.+++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 3456899999999999887753 378999999999876 5678877778999999999999999998865 689999
Q ss_pred cceeeccCcccCC-cc-ccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCC
Q 045507 504 LQILCLHQYMLGD-IA-IIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQL 560 (566)
Q Consensus 504 L~~L~L~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l 560 (566)
|++|++++|.+.. |. .+.++.+|++|++++|.+..+|.. ++.+++|++|++++|.-.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999999999988 54 478999999999999999988876 789999999999996433
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=2.2e-12 Score=121.81 Aligned_cols=129 Identities=23% Similarity=0.305 Sum_probs=111.0
Q ss_pred ccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh-hhhcccccceeecc
Q 045507 432 CHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVNLQILCLH 510 (566)
Q Consensus 432 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~ 510 (566)
.+.+..+.+.+..+|... .++|+.|.+.++. ...++...|..+++|++|++++|.+..+|. .+..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777777787777643 4899999999887 456666667899999999999999999885 46899999999999
Q ss_pred CcccCC-cc-ccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 511 QYMLGD-IA-IIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 511 ~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|.++. |. .+..+.+|++|+|++|.+..+|..++.+++|++|++++ +++..+|.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~ 152 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPH 152 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCH
Confidence 999988 44 46899999999999999999999999999999999999 68888875
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=1.8e-12 Score=119.35 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=82.4
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc-CC
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS-LP 495 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp 495 (566)
+.....++......+++++.++.|.+..++....+++|++|.+.++.- ....+.. +..+++|++|++++|.+.. .|
T Consensus 53 ~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 53 NINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV--TSDKIPN-LSGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp SSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC--BGGGSCC-CTTCTTCCEEECCSSBCBGGGH
T ss_pred CCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc--CcccChh-hcCCCCCCEEEecCCccCcHhH
Confidence 333333344444556667777766665555445566677777766542 1112222 3566667777777776664 45
Q ss_pred hhhhcccccceeeccCcc-cCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 496 SSIDLLVNLQILCLHQYM-LGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 496 ~~i~~L~~L~~L~L~~~~-l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
..++.+++|++|++++|. +...+.+..+++|++|++++|.+..+| .+..+++|++|++++
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 666667777777777776 555335666777777777777666665 566677777777766
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=1.6e-12 Score=119.79 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=113.8
Q ss_pred cccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc-CChhhhcccccc
Q 045507 427 DALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS-LPSSIDLLVNLQ 505 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~ 505 (566)
....+++++.+++|.+..++....+++|++|.+.++. ...++ .+..+++|++|++++|.+.. .|..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~---~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH---ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC---CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC---CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4567899999999999988866689999999999874 34443 35789999999999999886 688899999999
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCC-CCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPD-IKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~-l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+|++++|.+.. |..++.+++|++|++++|. +..+| .++.+++|++|++++ +.+..+|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~ 175 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYR 175 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCT
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChH
Confidence 99999999887 8889999999999999997 99998 699999999999999 4566554
No 18
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=2.1e-12 Score=130.95 Aligned_cols=146 Identities=21% Similarity=0.243 Sum_probs=121.4
Q ss_pred EEeCcccccCCcccccccccEEEeecCCCCCCCCC--C-CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCc
Q 045507 414 LVRNEDVWKWPNEDALKQCHAISLLNSSIPELPEG--L-ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMW 490 (566)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~ 490 (566)
.+.+..+..+|. ..+..++.|.++.|.+..++.. . .+++|+.|.+.++. ...++...|..+++|++|++++|.
T Consensus 24 ~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 24 SCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp ECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECCCCc
Confidence 344444555553 4566789999999999877654 2 78999999998886 566776667899999999999999
Q ss_pred cccCCh-hhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccchhh----cCCCCCCEEeccCCCCCccC
Q 045507 491 LFSLPS-SIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEEL----GQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 491 ~~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i----~~L~~L~~L~l~~c~~l~~l 563 (566)
+..+|. .+..+.+|++|+|++|.+.. |..+..+.+|++|+|++|.+..+|..+ +.+++|++|+|++ +++..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCcc
Confidence 999875 68999999999999999887 678999999999999999999999876 6899999999999 788888
Q ss_pred C
Q 045507 564 A 564 (566)
Q Consensus 564 P 564 (566)
|
T Consensus 179 ~ 179 (361)
T 2xot_A 179 P 179 (361)
T ss_dssp C
T ss_pred C
Confidence 7
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=7.7e-12 Score=121.26 Aligned_cols=132 Identities=27% Similarity=0.368 Sum_probs=74.8
Q ss_pred cccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh-hhhcccccc
Q 045507 429 LKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~ 505 (566)
+.+++++.++.|.+..++. ...+++|++|.+.++. ...++..+|..+++|++|++++|.+..+|. .+..+++|+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK---LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC---CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc---cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 3456666666666655543 2345666666665554 345555555556666666666666665553 345566666
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccCC
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+|++++|.+.. +..++.+++|++|++++|.+..+|.. ++.+++|++|++++ +.+..+|
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~ 173 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVP 173 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeC
Confidence 66666666555 33455666666666666666555544 45666666666665 3444444
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.36 E-value=2.7e-12 Score=125.78 Aligned_cols=129 Identities=24% Similarity=0.237 Sum_probs=55.7
Q ss_pred cccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccceeec
Q 045507 431 QCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCL 509 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L 509 (566)
+++++.++.|.+..++....+++|++|.+.++. ...+|.. +..+++|++|++++|.+..+| ..++.+++|++|+|
T Consensus 56 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ---LQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp TCCEEECTTSCCCEEECCSCCTTCCEEECCSSC---CSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCcccCCCCCCcCCEEECCCCc---CCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 344444444444333333334444444444433 2233322 234444444444444444443 23444444444444
Q ss_pred cCcccCC-c-cccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccCC
Q 045507 510 HQYMLGD-I-AIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 510 ~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP 564 (566)
++|.+.. | ..+..+.+|++|+|++|.+..+|.+ +..+++|++|++++ +.+..+|
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip 188 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIP 188 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC-CcCCccC
Confidence 4444444 2 2234444444444444444444433 23444444444444 3444444
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=7.5e-12 Score=121.50 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=119.5
Q ss_pred EeCcccccCCcccccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccc
Q 045507 415 VRNEDVWKWPNEDALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF 492 (566)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 492 (566)
+.+.....++......+++++.++.|.+..++.. ..+++|++|.+.++. ...++...+..+++|++|++++|.+.
T Consensus 70 l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ---LQSLPDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc---CCccCHHHhccCCCCCEEECCCCccC
Confidence 3333344444445677899999999999887663 478999999999886 56777777789999999999999999
Q ss_pred cCChh-hhcccccceeeccCcccCC-c-cccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccCC
Q 045507 493 SLPSS-IDLLVNLQILCLHQYMLGD-I-AIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 493 ~lp~~-i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP 564 (566)
.+|.. ++.+++|++|++++|.+.. | ..++.+++|++|++++|.+..+|.. ++.+++|++|++++|+-...+|
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 98754 6899999999999999988 4 4578999999999999999888765 7999999999999965433333
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.5e-12 Score=114.06 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=107.3
Q ss_pred ccccccEEEeecCCCC--CCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc-CChhhhcccc
Q 045507 428 ALKQCHAISLLNSSIP--ELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS-LPSSIDLLVN 503 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~--~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~ 503 (566)
.+.+++++.+++|.+. .+|.. ..+++|+.|.+.++. ...+ ..+..+++|++|++++|.+.. +|..++.+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG---LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC---CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC---CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 3578999999999987 66665 478999999999875 3444 345789999999999999998 7888888999
Q ss_pred cceeeccCcccCC-c--cccccCccCcEEeccCCCCCccch----hhcCCCCCCEEeccC
Q 045507 504 LQILCLHQYMLGD-I--AIIGKLKNLEILSIWGPDIKTLPE----ELGQLTKLRQLDLVN 556 (566)
Q Consensus 504 L~~L~L~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~~ 556 (566)
|++|++++|.+.. | ..++.+++|++|++++|.+..+|. .++.+++|++|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999988 4 889999999999999999988876 689999999999874
No 23
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=9e-12 Score=122.17 Aligned_cols=136 Identities=19% Similarity=0.281 Sum_probs=85.6
Q ss_pred cccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhh
Q 045507 420 VWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSID 499 (566)
Q Consensus 420 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~ 499 (566)
...++......+++++.++.|.+..++....+++|+.|.+.++. ...++. +..+++|++|++++|.+..+ ..++
T Consensus 58 i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~~--l~~l~~L~~L~L~~n~i~~~-~~l~ 131 (291)
T 1h6t_A 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK---VKDLSS--LKDLKKLKSLSLEHNGISDI-NGLV 131 (291)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCGGG--GTTCTTCCEEECTTSCCCCC-GGGG
T ss_pred cccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCc---CCCChh--hccCCCCCEEECCCCcCCCC-hhhc
Confidence 33334444556777777777777666555566777777776654 233332 45667777777777766665 3466
Q ss_pred cccccceeeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccC
Q 045507 500 LLVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 500 ~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~l 563 (566)
.+++|++|++++|.+...+.++.+++|++|++++|.+..+|. ++.+++|++|++++ +.+..+
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~-N~i~~l 193 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK-NHISDL 193 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCBC
T ss_pred CCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCC-CcCCCC
Confidence 666777777777666665556666677777776666666654 66666666666666 344444
No 24
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=4.1e-12 Score=119.15 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=109.7
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-ChhhhcccccceeeccC
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQILCLHQ 511 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~ 511 (566)
+.+...++.+..+|... .++++.|.+.++. ...++...|..+++|++|++++|.+..+ |..+.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSC---CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45677778888887643 3789999999886 5667776678999999999999999887 78899999999999999
Q ss_pred cccCC-ccc-cccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCCC
Q 045507 512 YMLGD-IAI-IGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 512 ~~l~~-p~~-i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|.++. |.. +..+.+|++|+|++|.+..+ |..++.+++|++|+|++ +.+..+|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 145 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAK 145 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECH
Confidence 99998 554 68899999999999999887 56799999999999999 67887775
No 25
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.4e-12 Score=117.72 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=109.1
Q ss_pred ccccccEEEeecCCCCCCCCCCCCC-ccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhh-hcccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEGLECP-HLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSI-DLLVNLQ 505 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~L~~L~ 505 (566)
.+.+++.+.+++|.+..++....+. +|+.|.+.++. ...+ ..+..+++|++|++++|.+..+|..+ +.+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~---l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC---CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC---CCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4668999999999998887665554 99999999886 3444 23578999999999999999998665 8999999
Q ss_pred eeeccCcccCC-cc--ccccCccCcEEeccCCCCCccchh----hcCCCCCCEEeccCCC
Q 045507 506 ILCLHQYMLGD-IA--IIGKLKNLEILSIWGPDIKTLPEE----LGQLTKLRQLDLVNCF 558 (566)
Q Consensus 506 ~L~L~~~~l~~-p~--~i~~L~~L~~L~l~~~~l~~lP~~----i~~L~~L~~L~l~~c~ 558 (566)
+|++++|.+.. |. .++.+++|++|++++|.+..+|.. ++.+++|++|++++|+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999988 65 789999999999999999999986 9999999999999854
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=4.1e-12 Score=138.06 Aligned_cols=148 Identities=22% Similarity=0.242 Sum_probs=123.2
Q ss_pred EEEeCcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCc
Q 045507 413 FLVRNEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMW 490 (566)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~ 490 (566)
+.+.+.....+|. ..+.+++++.++.|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCc
Confidence 3344444555553 456889999999999987665 3478999999999886 456666667899999999999999
Q ss_pred cccC-ChhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCC--ccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 491 LFSL-PSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK--TLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 491 ~~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~--~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+..+ |..++++++|++|++++|.+.. |..++++.+|++|++++|.+. .+|..++++++|++|++++ +.+..+|+
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecCh
Confidence 9987 7899999999999999999887 478999999999999999887 5899999999999999999 56666553
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=7.4e-12 Score=119.99 Aligned_cols=130 Identities=25% Similarity=0.354 Sum_probs=113.3
Q ss_pred ccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNL 504 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L 504 (566)
...+++++.++.|.+..++.. ..+++|+.|.+.++. ...++...|..+++|++|++++|.+..+|.. ++.+++|
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ---LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc---ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 457899999999999877653 478999999999887 5677777788999999999999999998865 6889999
Q ss_pred ceeeccCcccCC-cc-ccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCCCCCc
Q 045507 505 QILCLHQYMLGD-IA-IIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNCFQLK 561 (566)
Q Consensus 505 ~~L~L~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c~~l~ 561 (566)
++|+|++|.+.. |. .++.+.+|++|+|++|.+..+|. .+..+++|++|++++| .+.
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 192 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN-QFD 192 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC-cee
Confidence 999999999988 54 68999999999999999998876 6899999999999994 443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.33 E-value=4e-12 Score=138.67 Aligned_cols=143 Identities=23% Similarity=0.269 Sum_probs=121.2
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+......| ...+.++++|.++.|.+..++.. ..+++|++|.++++. ...++...|..+++|++|++++|.++.+
T Consensus 40 ~~~l~~vP-~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 40 ELNFYKIP-DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TSCCSSCC-SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCcCccC-CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 33444555 34567899999999999888643 479999999999886 5678887789999999999999999999
Q ss_pred Ch-hhhcccccceeeccCcccCC-c-cccccCccCcEEeccCCCCCc--cchhhcCCCCCCEEeccCCCCCccCC
Q 045507 495 PS-SIDLLVNLQILCLHQYMLGD-I-AIIGKLKNLEILSIWGPDIKT--LPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 495 p~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|. .+++|++|++|+|++|+++. | ..+++|++|++|++++|.+.. +|..++.+++|++|++++ +++..++
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 189 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY 189 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEEC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccc
Confidence 85 68999999999999999988 4 468999999999999998764 688899999999999999 5666654
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.32 E-value=6.1e-12 Score=122.36 Aligned_cols=134 Identities=23% Similarity=0.249 Sum_probs=112.4
Q ss_pred cccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccc
Q 045507 427 DALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVN 503 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~ 503 (566)
..+.+++++.++.|.+..++. ...+++|++|.+.++. ...++...+..+++|++|++++|.+..+| ..++++++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc---CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 345689999999999977654 3468999999998875 45666666788999999999999998876 67899999
Q ss_pred cceeeccCcccCC--ccccccCccCcEEeccCCCCCc--cchhhcCCCCCCEEeccCCCCCccCC
Q 045507 504 LQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKT--LPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 504 L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|++|++++|.+.. +..++++++|++|++++|.+.. +|..++.+++|++|++++ +++..+|
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~ 165 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY 165 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEEC
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCC
Confidence 9999999999887 4468999999999999998876 789999999999999999 5666554
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=9.6e-12 Score=121.57 Aligned_cols=126 Identities=22% Similarity=0.306 Sum_probs=60.3
Q ss_pred ccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCc-cccC-Chhhhcccc
Q 045507 428 ALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMW-LFSL-PSSIDLLVN 503 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~L~~ 503 (566)
.+.+++++.++.|.+..++. ...+++|++|.+.++. ...++...+..+++|++|++++|. +..+ |..+..+++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 34566666666666654442 1245556666655543 223322233445555555555553 4444 344444555
Q ss_pred cceeeccCcccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccC
Q 045507 504 LQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVN 556 (566)
Q Consensus 504 L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~ 556 (566)
|++|++++|.+.. |..+.++++|++|++++|.+..+|.. ++.+++|++|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence 5555555554444 33344444555555544444444332 44444444444444
No 31
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.32 E-value=2.6e-12 Score=106.01 Aligned_cols=77 Identities=10% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHHHHhhhhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHHHHhhh
Q 045507 10 LEVVKCLAPPTESRLRYLRNYNANIESLKAEMEKLRDESTRIQRRVSEAKAKG-EEIEEKVKKWVIRTDKIIDEAAKFIE 88 (566)
Q Consensus 10 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~l~~~a~~~eD~ld 88 (566)
+.+++++.+.+.++.. ...+++++++.|+++|..|+++|.+|+.+. ...+++++.|++++|++|||+||+||
T Consensus 4 ~~ll~KL~~ll~~E~~-------l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFK-------LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556566666554 455789999999999999999999999873 24689999999999999999999999
Q ss_pred hhhhh
Q 045507 89 DEETN 93 (566)
Q Consensus 89 ~~~~~ 93 (566)
+|.+.
T Consensus 77 ~f~~~ 81 (115)
T 3qfl_A 77 KFLVQ 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 32
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=1.6e-11 Score=121.44 Aligned_cols=123 Identities=22% Similarity=0.305 Sum_probs=56.5
Q ss_pred cccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccce
Q 045507 427 DALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQI 506 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 506 (566)
....+++++.+++|.+..++....+++|+.|.+.++. ...++ .+..+++|++|++++|.+..+|. ++.+++|++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~---l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP---LKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC---CSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc---CCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 3445555566655555554443345555555555443 22222 12444455555555554444432 444444444
Q ss_pred eeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 507 LCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 507 L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
|++++|.+...+.++.+++|++|++++|.+..+|. ++.+++|++|++++
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 44444444442124444444444444444444433 44444444444444
No 33
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=9.3e-12 Score=116.71 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=108.2
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCC-ChHHHhcCccCcEEEecCCccccCCh-hhhcccccceeecc
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNI-PEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVNLQILCLH 510 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~ 510 (566)
+.+.++.+.+..+|... .+.++.|.+.++. ...+ +...|..+++|++|++++|.+..+|. .++.+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc---CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888889888887643 4567899998886 3444 44557899999999999999998875 79999999999999
Q ss_pred CcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCCC
Q 045507 511 QYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 511 ~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|.+.. |..++.+.+|++|+|++|.+..+ |..++.+++|++|+|++ +++..+|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 146 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAP 146 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECH
Confidence 999988 45689999999999999999887 67799999999999999 67777743
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=1.6e-11 Score=120.29 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=114.0
Q ss_pred cccccccEEEeecCCCCCCCCCC-CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhccccc
Q 045507 427 DALKQCHAISLLNSSIPELPEGL-ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNL 504 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L 504 (566)
....+++.+.++.|.+..+|... .+++|+.|.+.++. ...++...|..+++|++|++++|.+..+|.. +..+++|
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~---l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR---LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC---CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc---CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 45678999999999998888754 68999999999886 5677777778999999999999999998754 6889999
Q ss_pred ceeeccCcccCC-ccc-cccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCC
Q 045507 505 QILCLHQYMLGD-IAI-IGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 505 ~~L~L~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~ 558 (566)
++|+|++|.++. |.. +..+.+|++|+|++|.+..+|..+..+.+|++|++++++
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 999999999998 554 578999999999999999999999999999999999843
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=1.1e-11 Score=121.46 Aligned_cols=130 Identities=25% Similarity=0.249 Sum_probs=114.2
Q ss_pred cccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccce
Q 045507 427 DALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQI 506 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 506 (566)
....+++.+.+++|.+..++....+++|++|.+.++. ...++. +..+++|++|++++|.+..+|. ++.+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~---l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCc---cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 4567899999999999888877789999999999886 455555 6899999999999999998765 899999999
Q ss_pred eeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 507 LCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 507 L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|++++|.+...+.++.+++|++|++++|.+..+ ..++.+++|++|++++ +.+..+|
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~ 172 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIV 172 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCG
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccch
Confidence 999999999977899999999999999999988 5799999999999999 4666654
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=2.3e-11 Score=120.33 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=80.9
Q ss_pred ccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 426 EDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 426 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
.....+++++.++.|.+..++....+++|+.|.+.++. ...++. +..+++|++|++++|.+..+|. ++.+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~---l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ---ITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC---CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC---CCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCcc
Confidence 34455677777777777666655566777777776664 333433 4566667777777776666554 56666666
Q ss_pred eeeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccC
Q 045507 506 ILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 506 ~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~l 563 (566)
+|++++|.+...+.+..+++|++|++++|.+..+|. +..+++|++|++++ +.+..+
T Consensus 155 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~-N~l~~~ 210 (308)
T 1h6u_A 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKN-NQISDV 210 (308)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTT-SCCCBC
T ss_pred EEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccC-CccCcc
Confidence 666666666662226666666666666666666654 66666666666666 344433
No 37
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=1.6e-11 Score=118.49 Aligned_cols=120 Identities=29% Similarity=0.309 Sum_probs=61.1
Q ss_pred cccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceee
Q 045507 429 LKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILC 508 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~ 508 (566)
..+++.+.+++|.+..++....+++|+.|.+.++. ...++. +..+++|++|++++|.+..+|.... .+|++|+
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~---i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ---ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc---cCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 34555555555555555543445555555555543 233333 3455555555555555555443222 4555555
Q ss_pred ccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 509 LHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 509 L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
+++|.+..++.++.+.+|++|++++|.+..+| .++.+++|++|++++
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC
Confidence 55555554334555555555555555555554 355555555555554
No 38
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.3e-11 Score=111.48 Aligned_cols=120 Identities=25% Similarity=0.329 Sum_probs=102.6
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccceeeccC
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLHQ 511 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~ 511 (566)
+.+.++.+.+..+|... .++|+.|.+.++. ...+|. .+..+++|++|++++|.+..+| ..+..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~---i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ---FTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC---CCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc---CchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46777788888787543 4689999998886 467774 5588999999999999999986 5689999999999999
Q ss_pred cccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCC
Q 045507 512 YMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNC 557 (566)
Q Consensus 512 ~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c 557 (566)
|.++. |..+..+.+|++|+|++|.+..+|.. +..+++|++|+++++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 99888 55799999999999999999999875 889999999999984
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.28 E-value=1.2e-11 Score=133.31 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=119.6
Q ss_pred EEeCcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcc
Q 045507 414 LVRNEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWL 491 (566)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~ 491 (566)
.+.+.....+|. ..+..+++++++.|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.+
T Consensus 13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCcC
Confidence 333444445553 456789999999999977653 3578999999999886 4567666678999999999999999
Q ss_pred ccCC-hhhhcccccceeeccCcccCC-cc-ccccCccCcEEeccCCCCCc--cchhhcCCCCCCEEeccCCCCCccCC
Q 045507 492 FSLP-SSIDLLVNLQILCLHQYMLGD-IA-IIGKLKNLEILSIWGPDIKT--LPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 492 ~~lp-~~i~~L~~L~~L~L~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
..+| ..++++++|++|++++|.+.. |. .++++++|++|++++|.+.. +|..++++++|++|++++ +.+..+|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~ 165 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY 165 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEEC
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-Cccceec
Confidence 8876 789999999999999999888 43 69999999999999998875 799999999999999999 4555554
No 40
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=3.2e-12 Score=141.16 Aligned_cols=108 Identities=25% Similarity=0.271 Sum_probs=89.5
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-ccccccCccCcE
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEI 528 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~ 528 (566)
.+++|+.|.+.++. ...+|..++ .+++|++|+|++|.+..+|.+|+.|++|++|+|++|.|+. |..+++|.+|++
T Consensus 222 ~l~~L~~L~Ls~n~---l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ---IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSC---CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCC---CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 56788888888776 457777765 7888888888888888888888888888888888888888 888888888888
Q ss_pred EeccCCCCCccchhhcCCCCCCEEeccCCCCCcc
Q 045507 529 LSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKV 562 (566)
Q Consensus 529 L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~ 562 (566)
|+|++|.+..+|.+|+.|++|++|+|++ +.+..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~ 330 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEK 330 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTT-SCCCS
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCC-CccCC
Confidence 8888888888888888888888888888 45543
No 41
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.4e-11 Score=112.92 Aligned_cols=121 Identities=20% Similarity=0.344 Sum_probs=101.9
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCCh-HHHhcCccCcEEEecCCccccC-Chhhhcccccceeecc
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPE-KFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQILCLH 510 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~ 510 (566)
+.+.++.+.+..+|... ..+++.|.+.++. ...++. ..+..+++|++|++++|.+..+ |..++.+++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCc---CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67788888888887643 3489999998876 455554 3568899999999999999987 6789999999999999
Q ss_pred CcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCC
Q 045507 511 QYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 511 ~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c 557 (566)
+|.++. |..+..+++|++|+|++|.+..+ |..++.+++|++|+++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 999988 45588999999999999988866 778999999999999984
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=3.2e-11 Score=111.90 Aligned_cols=128 Identities=23% Similarity=0.368 Sum_probs=107.2
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhcccccceeeccC
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNLQILCLHQ 511 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~~ 511 (566)
+.+....+.+..+|.. ..++|+.|.+.++. ...++...+..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCc---cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4556666666666643 25689999999886 5677777778999999999999999998764 68899999999999
Q ss_pred cccCC-cc-ccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccCCC
Q 045507 512 YMLGD-IA-IIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 512 ~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|.+.. |. .++.+.+|++|++++|.+..+|.. ++.+++|++|++++ +.+..+|.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~ 141 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPD 141 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCH
Confidence 99988 54 478999999999999999988776 78999999999999 57777775
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.26 E-value=2e-11 Score=127.73 Aligned_cols=147 Identities=22% Similarity=0.292 Sum_probs=119.8
Q ss_pred EEEeCcccccCCcccccccccEEEeecCCCCCC-CC-CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCc
Q 045507 413 FLVRNEDVWKWPNEDALKQCHAISLLNSSIPEL-PE-GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMW 490 (566)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~-~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~ 490 (566)
+.+.+.....+|. .+.+++++.++.|.+..+ +. ...+++|++|.+.++.. ...++...|..+++|++|++++|.
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc--cceECcccccccccCCEEeCCCCc
Confidence 3344445555554 568899999999999776 33 34789999999998864 346666667899999999999999
Q ss_pred cccC-ChhhhcccccceeeccCcccCC--ccc--cccCccCcEEeccCCCCCcc-chh-hcCCCCCCEEeccCCCCCccC
Q 045507 491 LFSL-PSSIDLLVNLQILCLHQYMLGD--IAI--IGKLKNLEILSIWGPDIKTL-PEE-LGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 491 ~~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~--i~~L~~L~~L~l~~~~l~~l-P~~-i~~L~~L~~L~l~~c~~l~~l 563 (566)
+..+ |..++++++|++|++++|.+.. |.. ++++++|++|++++|.+..+ |.. ++.+++|++|++++| .+..+
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 169 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSI 169 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-ccccc
Confidence 9876 7889999999999999999987 555 89999999999999988877 655 899999999999994 55554
Q ss_pred C
Q 045507 564 A 564 (566)
Q Consensus 564 P 564 (566)
+
T Consensus 170 ~ 170 (455)
T 3v47_A 170 C 170 (455)
T ss_dssp C
T ss_pred C
Confidence 3
No 44
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=3.9e-11 Score=108.33 Aligned_cols=123 Identities=23% Similarity=0.359 Sum_probs=101.1
Q ss_pred ccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhcccccceeecc
Q 045507 432 CHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNLQILCLH 510 (566)
Q Consensus 432 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~ 510 (566)
.+.+.+..+.+..+|.. ..++|+.|.+.++. ...++...+..+++|++|++++|.+..+|.. ++.+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 35677777777777743 34789999998876 4567777778899999999999999988754 6889999999999
Q ss_pred CcccCC-cc-ccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCC
Q 045507 511 QYMLGD-IA-IIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCF 558 (566)
Q Consensus 511 ~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~ 558 (566)
+|.++. |. .++.+.+|++|++++|.+..+|.. +..+++|++|++++++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 999888 44 468899999999999999998876 4789999999999843
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.26 E-value=9.4e-12 Score=118.28 Aligned_cols=133 Identities=15% Similarity=0.223 Sum_probs=78.5
Q ss_pred ccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecC-CccccCC-hhhhcccc
Q 045507 428 ALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMAR-MWLFSLP-SSIDLLVN 503 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~~L~~ 503 (566)
.+.+++++.++.|.+..++.. ..+++|++|.+.++.. ...++...|..+++|++|++++ |.+..+| ..++.+++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~--l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT--LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS--CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC--cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 445677777777776655542 3566777777766542 3345554456666666666666 6666655 34566666
Q ss_pred cceeeccCcccCC-ccccccCccCc---EEeccCC-CCCccchh-hcCCCCCC-EEeccCCCCCccCC
Q 045507 504 LQILCLHQYMLGD-IAIIGKLKNLE---ILSIWGP-DIKTLPEE-LGQLTKLR-QLDLVNCFQLKVIA 564 (566)
Q Consensus 504 L~~L~L~~~~l~~-p~~i~~L~~L~---~L~l~~~-~l~~lP~~-i~~L~~L~-~L~l~~c~~l~~lP 564 (566)
|++|++++|.+.. |. ++.+.+|+ +|++++| .+..+|.. ++.+++|+ +|++++ +.+..+|
T Consensus 107 L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~ 172 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQ 172 (239)
T ss_dssp CCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEEC
T ss_pred CCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccC
Confidence 6666666666655 33 55555555 6666666 55555543 55566666 666655 3444554
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=3.6e-11 Score=117.44 Aligned_cols=124 Identities=23% Similarity=0.340 Sum_probs=59.1
Q ss_pred ccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh-hhhcccccce
Q 045507 430 KQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVNLQI 506 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~ 506 (566)
.+++++.+..|.+..++.. ..+++|+.|.+.++. ...++...+..+++|++|++++|.+..+|. .+..+++|++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA---LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc---ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 3444455544444433221 234455555554443 233443334445555555555555554443 2445555555
Q ss_pred eeccCcccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccC
Q 045507 507 LCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVN 556 (566)
Q Consensus 507 L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~ 556 (566)
|++++|.+.. |..+..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 5555555444 44455555555555555555544432 45555555555555
No 47
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=3.5e-11 Score=129.60 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=87.0
Q ss_pred cccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhh
Q 045507 420 VWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSID 499 (566)
Q Consensus 420 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~ 499 (566)
+..++....+.++++|.++.|.+..++....+++|+.|.+.++. ...++. +..+++|+.|++++|.+..+ ..++
T Consensus 77 l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~---l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~ 150 (605)
T 1m9s_A 77 LTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG---ISDING--LVHLPQLESLYLGNNKITDI-TVLS 150 (605)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSC---CCCCGG--GGGCTTCSEEECCSSCCCCC-GGGG
T ss_pred CCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCC---CCCCcc--ccCCCccCEEECCCCccCCc-hhhc
Confidence 33333344455667777777766666655566777777776665 233332 45677777777777777766 5667
Q ss_pred cccccceeeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCC
Q 045507 500 LLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 500 ~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c 557 (566)
.|++|+.|+|++|.+.. ++ +..|++|++|+|++|.+..+| .+..|++|+.|+|++|
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSE
T ss_pred ccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCC
Confidence 77777777777777776 33 777777777777777777775 4777777777777773
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.23 E-value=2.2e-11 Score=120.70 Aligned_cols=128 Identities=18% Similarity=0.334 Sum_probs=101.0
Q ss_pred ccccEEEeecCCCCC---CCCC-CCCCccceEEecc-cccccccCCChHHHhcCccCcEEEecCCccc-cCChhhhcccc
Q 045507 430 KQCHAISLLNSSIPE---LPEG-LECPHLDFLLMVC-KDTLIETNIPEKFFSRIKKLKDVDMARMWLF-SLPSSIDLLVN 503 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~---~~~~-~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~ 503 (566)
.+++++.++++.+.+ +|.. ..+++|++|.+.+ +.. ...+|..+ ..+++|++|++++|.+. .+|..++++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l--~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc--cccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578888888888864 5543 3688899999885 443 33566554 78888999999988887 67888888999
Q ss_pred cceeeccCcccCC--ccccccCccCcEEeccCCCCC-ccchhhcCCC-CCCEEeccCCCCCc
Q 045507 504 LQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK-TLPEELGQLT-KLRQLDLVNCFQLK 561 (566)
Q Consensus 504 L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~-~L~~L~l~~c~~l~ 561 (566)
|++|++++|.+.. |..++.+++|++|++++|.+. .+|..++.++ +|++|++++| .+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~ 187 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLT 187 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eee
Confidence 9999999988774 788888899999999888877 7888888888 8888888884 443
No 49
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=3.6e-11 Score=115.95 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=116.7
Q ss_pred EEeCcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc
Q 045507 414 LVRNEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS 493 (566)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 493 (566)
.+.+.....++......+++.+.++.|.+..++....+++|+.|.+.++. ...++.. .. .+|+.|++++|.+..
T Consensus 47 ~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~---l~~l~~~--~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 47 NGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR---LKNLNGI--PS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC---CSCCTTC--CC-SSCCEEECCSSCCSB
T ss_pred ECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc---cCCcCcc--cc-CcccEEEccCCccCC
Confidence 34444444555556678999999999999888776689999999999886 4555542 23 899999999999999
Q ss_pred CChhhhcccccceeeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 494 LPSSIDLLVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 494 lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+| .++.+++|++|++++|.++..+.++.+++|++|++++|.+..+ ..+..+++|++|++++ +.+...|
T Consensus 121 ~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 121 TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEE-EEEECCC
T ss_pred Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCC-CcccCCc
Confidence 76 5899999999999999999855799999999999999999888 6799999999999998 4554443
No 50
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=6.9e-11 Score=127.35 Aligned_cols=137 Identities=19% Similarity=0.266 Sum_probs=117.5
Q ss_pred cccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhh
Q 045507 420 VWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSID 499 (566)
Q Consensus 420 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~ 499 (566)
+..++....+.+++.|.++.|.+..++....+++|+.|.+.++. ...++ .+..+++|+.|++++|.+..+| .++
T Consensus 55 i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---l~~l~--~l~~l~~L~~L~Ls~N~l~~l~-~l~ 128 (605)
T 1m9s_A 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK---IKDLS--SLKDLKKLKSLSLEHNGISDIN-GLV 128 (605)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC---CCCCT--TSTTCTTCCEEECTTSCCCCCG-GGG
T ss_pred CCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC---CCCCh--hhccCCCCCEEEecCCCCCCCc-ccc
Confidence 34444556678999999999999888777789999999999886 44555 2578999999999999999874 688
Q ss_pred cccccceeeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 500 LLVNLQILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 500 ~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
.|++|+.|+|++|.+...+.++.|++|++|+|++|.+..+|. ++.|++|++|+|++| .+..+|
T Consensus 129 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~ 191 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLR 191 (605)
T ss_dssp GCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCG
T ss_pred CCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CCCCCh
Confidence 999999999999999987789999999999999999998876 999999999999994 666554
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=4.4e-11 Score=134.92 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=120.4
Q ss_pred eEEEeCcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCC
Q 045507 412 VFLVRNEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM 489 (566)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~ 489 (566)
...+.+......|. .+.+++++.++.|.+..++. ...+++|++|.+.++.. ...++...|..+++|++|++++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCC
Confidence 34444555666665 77899999999999976532 34789999999998854 55676666789999999999999
Q ss_pred ccccC-ChhhhcccccceeeccCcccCC--ccc--cccCccCcEEeccCCCCCcc--chhhcCCCCCCEEeccCCCCCcc
Q 045507 490 WLFSL-PSSIDLLVNLQILCLHQYMLGD--IAI--IGKLKNLEILSIWGPDIKTL--PEELGQLTKLRQLDLVNCFQLKV 562 (566)
Q Consensus 490 ~~~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~--i~~L~~L~~L~l~~~~l~~l--P~~i~~L~~L~~L~l~~c~~l~~ 562 (566)
.+..+ |..++++++|++|+|++|.+.. |.. +++|++|++|+|++|.+..+ |..+++|++|++|++++ +.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCe
Confidence 99886 8899999999999999999876 555 89999999999999988766 35799999999999999 45543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=4.9e-11 Score=124.24 Aligned_cols=134 Identities=21% Similarity=0.259 Sum_probs=100.3
Q ss_pred ccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
...+++.+.++.|.+..++.. ..+++|+.|.+.++.. ...++...|..+++|++|++++|.+..+|. +..+++|+
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 210 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLD 210 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCC
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeecCCCCcCccccc-cCCCcccC
Confidence 356777788877777665542 3577788888776554 456666667788888888888888888874 67788888
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCCC
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|+|++|.+.. |..+..+.+|++|+|++|.+..+ |..+..+++|++|+|++ +++..+|.
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 272 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPH 272 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCT
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccCh
Confidence 88888888776 66788888888888888877766 44577888888888888 57777664
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=3.8e-11 Score=128.58 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=69.0
Q ss_pred cccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeecc
Q 045507 431 QCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLH 510 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 510 (566)
.++.|.++.|.+..+|....+++|+.|.+++|. ...+|..+ ..+++|++|++++|.++.+| .++.|++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~---l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR---LRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSC---CCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccc---ccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 466777777766666654455666666666554 33555433 55666666666666666655 56666666666666
Q ss_pred CcccCC---ccccccCccCcEEeccCCCCCccchhh----cCCCCCCEEe
Q 045507 511 QYMLGD---IAIIGKLKNLEILSIWGPDIKTLPEEL----GQLTKLRQLD 553 (566)
Q Consensus 511 ~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~~i----~~L~~L~~L~ 553 (566)
+|.++. |..++.|++|++|+|++|.+..+|..+ ..|++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 666544 345666666666666666555554432 2355666554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.21 E-value=6.8e-11 Score=123.58 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=103.0
Q ss_pred ccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
...+++++.++.|.+..++.. ..+++|+.|.+.++.. ...++...|..+++|++|++++|.+..+| .+..+++|+
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 221 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK--LEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLE 221 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCC
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC--ccccChhhccCCCCCCEEECCCCcccccc-ccccccccc
Confidence 356778888888877665542 3577888888876554 55666666778888888888888888876 467788888
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCCC
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|+|++|.+.. |..+.++.+|++|+|++|.+..+ |..+..+++|++|+|++ +++..+|.
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 283 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLSSLPH 283 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCT
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCCccCh
Confidence 88888888777 67788888888888888877766 55688888888888888 57777764
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=3e-11 Score=114.74 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=65.5
Q ss_pred cccccEEEeecCC-CCCCCCC--CCCCccceEEecc-cccccccCCChHHHhcCccCcEEEecCCccccCCh--------
Q 045507 429 LKQCHAISLLNSS-IPELPEG--LECPHLDFLLMVC-KDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS-------- 496 (566)
Q Consensus 429 ~~~~r~l~l~~~~-~~~~~~~--~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-------- 496 (566)
..+++++.++.|. +..++.. ..+++|++|.+.+ +. ...++...|..+++|++|++++|.+..+|.
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~---l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN---LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT---CCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC---eeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccc
Confidence 3455566666554 5444432 2455555555554 32 334444344455555555555555444443
Q ss_pred -------------------hhhcccccc-eeeccCcccCC-ccccccCccCcEEeccCC-CCCccch-hhcCC-CCCCEE
Q 045507 497 -------------------SIDLLVNLQ-ILCLHQYMLGD-IAIIGKLKNLEILSIWGP-DIKTLPE-ELGQL-TKLRQL 552 (566)
Q Consensus 497 -------------------~i~~L~~L~-~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~-~l~~lP~-~i~~L-~~L~~L 552 (566)
.+..+++|+ +|++++|.+.. |.......+|++|++++| .+..+|. .+..+ ++|+.|
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 244455555 55555555444 333333345555555555 3555532 34555 555666
Q ss_pred eccCCCCCccCCC
Q 045507 553 DLVNCFQLKVIAP 565 (566)
Q Consensus 553 ~l~~c~~l~~lP~ 565 (566)
++++ +++..+|.
T Consensus 211 ~l~~-N~l~~l~~ 222 (239)
T 2xwt_C 211 DVSQ-TSVTALPS 222 (239)
T ss_dssp ECTT-CCCCCCCC
T ss_pred ECCC-CccccCCh
Confidence 6555 45555553
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.19 E-value=3.6e-11 Score=121.39 Aligned_cols=137 Identities=21% Similarity=0.308 Sum_probs=93.7
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+.....+|. ....+++++.+++|.+..++. ...+++|++|.+.++. ...++...+..+++|++|++++|.+..+
T Consensus 40 ~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 40 SGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp STTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc---cCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 334444443 344578888888888776654 3467788888887765 3445544456777788888888877777
Q ss_pred Chh-hhcccccceeeccCcccCC-cc--ccccCccCcEEeccCC-CCCcc-chhhcCCCCCCEEeccCC
Q 045507 495 PSS-IDLLVNLQILCLHQYMLGD-IA--IIGKLKNLEILSIWGP-DIKTL-PEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 495 p~~-i~~L~~L~~L~L~~~~l~~-p~--~i~~L~~L~~L~l~~~-~l~~l-P~~i~~L~~L~~L~l~~c 557 (566)
|.. ++.+++|++|++++|.+.. |. .++++++|++|++++| .+..+ |..++.+++|++|++++|
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 755 6777788888888877776 44 5677777777777777 45555 345777777777777763
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.19 E-value=8.7e-11 Score=122.30 Aligned_cols=143 Identities=17% Similarity=0.249 Sum_probs=89.5
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+..+..+|. ..+.+++.+.++.|.+..++. ...+++|+.|.+.++. ...++...|..+++|++|++++|.+..+
T Consensus 52 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 52 RKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH---IRTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp SCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC---CCEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc---CCccChhhccCCccCCEEECCCCcCCee
Confidence 333444442 345678888888888876543 2467888888887765 4556656667788888888888887777
Q ss_pred Ch-hhhcccccceeeccCcccCC-c-cccccCccCcEEeccCC-CCCccch-hhcCCCCCCEEeccCCCCCccCC
Q 045507 495 PS-SIDLLVNLQILCLHQYMLGD-I-AIIGKLKNLEILSIWGP-DIKTLPE-ELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 495 p~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~-~l~~lP~-~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|. .+..+++|++|+|++|.+.. | ..+.++++|++|++++| .+..+|. .+..+++|++|++++ +++..+|
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~ 201 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIP 201 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCC
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCcccc
Confidence 64 57777778888887777665 2 34555555555555553 3444433 344555555555554 2444443
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=3.3e-11 Score=134.55 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=64.7
Q ss_pred ccccccEEEeecCCCCC------------------CCCCC---CCCccceEEecccccccccCCChHHHhcCccCcEEEe
Q 045507 428 ALKQCHAISLLNSSIPE------------------LPEGL---ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDM 486 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~------------------~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l 486 (566)
...+++.|.++.|.+.+ +|... .+++|+.|.+.++.. ...+|..+ ..+++|++|++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l--~~~iP~~l-~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN--MTQLPDFL-YDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT--CCSCCGGG-GGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC--CccChHHH-hCCCCCCEEEC
Confidence 34566666666666665 55543 366666666665543 33444332 45555555555
Q ss_pred cCCc-ccc--CChhhhccc-------ccceeeccCcccCC-cc--ccccCccCcEEeccCCCCCccchhhcCCCCCCEEe
Q 045507 487 ARMW-LFS--LPSSIDLLV-------NLQILCLHQYMLGD-IA--IIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLD 553 (566)
Q Consensus 487 ~~~~-~~~--lp~~i~~L~-------~L~~L~L~~~~l~~-p~--~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~ 553 (566)
++|. +.. +|..++.+. +|++|+|++|.+.. |. .++++++|++|+|++|.+..+| .++.+++|++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence 5554 442 444444443 55555555555444 44 4455555555555554444444 444444444444
Q ss_pred ccC
Q 045507 554 LVN 556 (566)
Q Consensus 554 l~~ 556 (566)
+++
T Consensus 602 Ls~ 604 (876)
T 4ecn_A 602 LDY 604 (876)
T ss_dssp CCS
T ss_pred CcC
Confidence 444
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=9.4e-11 Score=122.51 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=93.8
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+..+..+| ...+.+++++.++.|.+..++. ...+++|+.|.+.++. ...++...|..+++|++|++++|.+..+
T Consensus 63 ~~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 63 RRGLSEVP-QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS---IRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp SSCCSSCC-SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCcCccC-CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc---cCCcChhhccCcccCCEEECCCCcCCcc
Confidence 33444444 2345688899999888876533 2467888888888775 4455555567788888888888888877
Q ss_pred Chh-hhcccccceeeccCcccCC-c-cccccCccCcEEeccCC-CCCccch-hhcCCCCCCEEeccCCCCCccCC
Q 045507 495 PSS-IDLLVNLQILCLHQYMLGD-I-AIIGKLKNLEILSIWGP-DIKTLPE-ELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 495 p~~-i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~-~l~~lP~-~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|.. ++.+++|++|+|++|.+.. | ..+.++++|++|++++| .+..+|. .+..+++|++|++++ +++..+|
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~ 212 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMP 212 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCC
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Ccccccc
Confidence 643 7778888888888887766 3 35566666666666664 4555544 355566666666655 3444444
No 60
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=3.7e-11 Score=105.10 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=94.6
Q ss_pred CCccceEEecccccccc-cCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC--ccccccCccCc
Q 045507 451 CPHLDFLLMVCKDTLIE-TNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLE 527 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~ 527 (566)
.++|+.|.+.++.- . ..+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. |..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l--~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRS--NEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBC--BTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcC--ChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 47899999998863 2 25665 447899999999999999988 788999999999999999887 66677799999
Q ss_pred EEeccCCCCCccc--hhhcCCCCCCEEeccCCCCCccCCC
Q 045507 528 ILSIWGPDIKTLP--EELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 528 ~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|++++|.+..+| ..++.+++|++|++++ +.+..+|.
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~ 130 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFN-CEVTNLND 130 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTT
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcC-CcccchHH
Confidence 9999999999876 7899999999999999 47777764
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.18 E-value=4.4e-11 Score=118.11 Aligned_cols=126 Identities=22% Similarity=0.245 Sum_probs=82.2
Q ss_pred cccccEEEeecCCCCCCCC---CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc--CChhhhcccc
Q 045507 429 LKQCHAISLLNSSIPELPE---GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS--LPSSIDLLVN 503 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~L~~ 503 (566)
..+++++.++.|.+..++. ...+++|+.|.+.++. ....+...+..+++|++|++++|.+.. +|..++.+++
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC---CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc---CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 4567777777776655443 2356777777776664 233333344666777777777776654 5667777777
Q ss_pred cceeeccCcccCC--ccccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCC
Q 045507 504 LQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNC 557 (566)
Q Consensus 504 L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c 557 (566)
|++|++++|.+.. |..+..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 7777777777665 4566677777777777776666543 5666777777777764
No 62
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=4.9e-11 Score=106.59 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=94.4
Q ss_pred CCccceEEecccccccc-cCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC--ccccccCccCc
Q 045507 451 CPHLDFLLMVCKDTLIE-TNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLE 527 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~ 527 (566)
.++|+.|.+.++.- . ..+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. |..++++++|+
T Consensus 23 ~~~L~~L~l~~n~l--~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKS--NDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBC--BTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCC--ChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 47899999998763 2 266654 47899999999999999988 788999999999999999887 55666799999
Q ss_pred EEeccCCCCCccc--hhhcCCCCCCEEeccCCCCCccCCC
Q 045507 528 ILSIWGPDIKTLP--EELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 528 ~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|++++|.+..+| ..++.+++|++|++++ +.+..+|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~ 137 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLND 137 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHH
Confidence 9999999999987 7899999999999999 57777664
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.18 E-value=1.3e-10 Score=128.03 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=114.4
Q ss_pred EeCcccccCCcccccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccc
Q 045507 415 VRNEDVWKWPNEDALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF 492 (566)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 492 (566)
+.+......|. ..+.+++++.+++|.+..++.. ..+++|++|.+.++. ...++...+..+++|++|++++|.+.
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCccC
Confidence 33444444443 3457899999999999887753 468999999998876 45666666788999999999999999
Q ss_pred cCCh-hhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCC
Q 045507 493 SLPS-SIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 493 ~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
.+|. .++++++|++|++++|.+.. |..++++++|++|++++|.+... |..++++++|++|++++ +.+..+|
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~ 161 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALK 161 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBC
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccC
Confidence 9886 58999999999999999877 46789999999999999977654 55688899999999988 4555544
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.17 E-value=5.1e-11 Score=121.99 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=74.2
Q ss_pred cccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccc
Q 045507 429 LKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~ 505 (566)
..+++++.+..+.+..+|.. ..+++|++|.+.++. ...++...+..+++|++|++++|.+..+| ..++.+++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 35566666666666555543 245666666666554 33444444456666666666666666554 3456666666
Q ss_pred eeeccCcccCC-ccc-cccCccCcEEeccCCCCCccc-hhhcCCCCCCEEeccC
Q 045507 506 ILCLHQYMLGD-IAI-IGKLKNLEILSIWGPDIKTLP-EELGQLTKLRQLDLVN 556 (566)
Q Consensus 506 ~L~L~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~ 556 (566)
+|++++|.+.. |.. ++++++|++|++++|.+..+| ..++.+++|++|++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 66666666666 443 356666666666666655553 3366666666666666
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.17 E-value=2.2e-10 Score=115.15 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=95.7
Q ss_pred EeCcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 415 VRNEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+.+.....++......+++++.+++|.+..++....+++|++|.+.++. ...++. +..+++|++|++++|.+..+
T Consensus 51 l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~---i~~~~~--~~~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK---ITDISA--LQNLTNLRELYLNEDNISDI 125 (347)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCCGG--GTTCTTCSEEECTTSCCCCC
T ss_pred EeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCc---ccCchH--HcCCCcCCEEECcCCcccCc
Confidence 3333444444445567788888888877777665567888888887764 344432 56778888888888877777
Q ss_pred ChhhhcccccceeeccCcc-cCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 495 PSSIDLLVNLQILCLHQYM-LGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 495 p~~i~~L~~L~~L~L~~~~-l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|. +..+++|++|++++|. +..++.+..+++|++|++++|.+..+|. ++.+++|++|++++| .+..+|
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 193 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDIS 193 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCG
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-cccccc
Confidence 65 6777777777777775 3335557777777777777776666655 677777777777763 444443
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.16 E-value=2e-10 Score=114.83 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=98.8
Q ss_pred ccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcC--------------------ccCcEEEec
Q 045507 430 KQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRI--------------------KKLKDVDMA 487 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l--------------------~~Lr~L~l~ 487 (566)
.+++++.++.|.+..++.. ..+++|+.|.+.++.... ..+....+..+ ++|+.|+++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-GGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-CCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECC
Confidence 6788888888887776653 467888888887664210 01111111222 456677777
Q ss_pred CCccccCC-hhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 488 RMWLFSLP-SSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 488 ~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+|.+..+| ..++.+++|++|++++|.+.. +..++.+++|++|++++|.+..+|..++.+++|++|++++ +.+..+|
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~ 280 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVG 280 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS-SCCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC-CCCCccC
Confidence 77776655 678888999999999998887 4578899999999999999999999999999999999998 6777776
Q ss_pred C
Q 045507 565 P 565 (566)
Q Consensus 565 ~ 565 (566)
.
T Consensus 281 ~ 281 (332)
T 2ft3_A 281 V 281 (332)
T ss_dssp T
T ss_pred h
Confidence 4
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.16 E-value=9.4e-11 Score=127.85 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=87.7
Q ss_pred ccccEEEeecCCCCCCCCCC--CCCccceEEecccccccccCCChHHHhcCc-------cCcEEEecCCccccCChhhh-
Q 045507 430 KQCHAISLLNSSIPELPEGL--ECPHLDFLLMVCKDTLIETNIPEKFFSRIK-------KLKDVDMARMWLFSLPSSID- 499 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-------~Lr~L~l~~~~~~~lp~~i~- 499 (566)
.+++++.++.|.+..+|... .+++|+.|.+.++. ...+|...+.... +|+.|++++|.+..+|..+.
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~---l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM---LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC---CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC---CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 35666666666666555432 35667777776655 3355554443332 67777777777777777765
Q ss_pred -cccccceeeccCcccCC-ccccccCccCcEEeccC------CC-CCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 500 -LLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWG------PD-IKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 500 -~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~------~~-l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
.+++|++|+|++|.+.. |..++++++|++|+|++ |. ...+|..++.+++|++|++++ +++..+|.
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~ip~ 583 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS-NDIRKVNE 583 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS-SCCCBCCS
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC-CcCCccCH
Confidence 77777777777777777 77777777777777743 32 346777777777777777777 45577775
No 68
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=4.8e-11 Score=107.62 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=94.4
Q ss_pred CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC-cccc-ccCccC
Q 045507 449 LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD-IAII-GKLKNL 526 (566)
Q Consensus 449 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i-~~L~~L 526 (566)
..+++|+.|.+.++. ...++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+.. |+.+ +.+++|
T Consensus 16 ~~~~~L~~L~l~~n~---l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK---IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSC---CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCC---CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 457899999999886 445654 434444999999999999988 678999999999999999998 6555 899999
Q ss_pred cEEeccCCCCCccch--hhcCCCCCCEEeccCCCCCccCCC
Q 045507 527 EILSIWGPDIKTLPE--ELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 527 ~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
++|++++|.+..+|. .++.+++|++|++++ +.+..+|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~ 130 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKH 130 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTT
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHh
Confidence 999999999999997 899999999999999 56777664
No 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=122.92 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=94.1
Q ss_pred eCcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc
Q 045507 416 RNEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS 493 (566)
Q Consensus 416 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 493 (566)
.+..+..+|. ..+.+++.+.++.|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.+..
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 19 HRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCcCCc
Confidence 3334444442 345678888888888876542 2467888888887765 344444445677788888888887777
Q ss_pred CCh-hhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCC
Q 045507 494 LPS-SIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 494 lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+|. .++++++|++|+|++|.+.. |..+.++.+|++|++++|.+..+ |..++.+++|++|++++ +++..+|
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~ 168 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIP 168 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCC
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccC
Confidence 764 35777777777777777665 45666777777777777666554 34566666666666666 3444444
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.16 E-value=2.4e-10 Score=114.13 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=100.4
Q ss_pred ccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 428 ALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
.+.+++.+.++.|.+..++. ...+++|++|.+.++. ...++...+..+++|++|++++|.+..+|..+. ++|+
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK---ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc---CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 45688999999998887764 3468899999998776 455544455788999999999998888887664 6888
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCCCC---ccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK---TLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~---~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|++++|.+.. +..+.++.+|++|++++|.+. ..|..++.+++|++|++++ +.+..+|.
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~ 188 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQ 188 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCS
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCc
Confidence 88888888776 445778888888888887664 3466678888888888887 46666664
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.15 E-value=4.4e-11 Score=120.72 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=106.1
Q ss_pred cccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh--hhhccc
Q 045507 427 DALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS--SIDLLV 502 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~i~~L~ 502 (566)
....+++++.++.|.+..++. ...+++|++|.+.++. ...++...+..+++|++|++++|.+..+|. .++.++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY---LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc---CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 346788999999998876643 3468899999998876 567888877889999999999999988886 788899
Q ss_pred ccceeeccCcc-cCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccC
Q 045507 503 NLQILCLHQYM-LGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 503 ~L~~L~L~~~~-l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~l 563 (566)
+|++|++++|. +.. |..++.+++|++|++++|.+..+ |..++.+++|++|++++| .+..+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~ 213 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILL 213 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTH
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccc
Confidence 99999999985 655 56788888999999988877765 777888888888888773 44443
No 72
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=4.5e-11 Score=131.96 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=84.9
Q ss_pred ccccEEEeecCCCCCCCCC-CCCCccceEEecccccc-cccCCChHHHhcCccCcEEEecCCccccCChhhhccccccee
Q 045507 430 KQCHAISLLNSSIPELPEG-LECPHLDFLLMVCKDTL-IETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 507 (566)
..++++.+..+.+...+.. ....+|+.+.+...... ....++...+..+..|+.|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 4577777877776554432 23344444444321100 022355666789999999999999999999999999999999
Q ss_pred eccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCCC
Q 045507 508 CLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAPN 566 (566)
Q Consensus 508 ~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~~ 566 (566)
+|++|.++. |..+++|.+|++|+|++|.+..+|.+|+.|++|++|+|++ +.+..+|.+
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~ 311 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE 311 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh
Confidence 999999999 9999999999999999999999999999999999999999 588899863
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=124.30 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=86.6
Q ss_pred cccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccce
Q 045507 429 LKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQI 506 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 506 (566)
+.+++++.++.|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.+..+|.. .+++|++
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc---cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence 3677788888777766652 2457778888877765 3445444557777788888888877777766 6777888
Q ss_pred eeccCcccCC---ccccccCccCcEEeccCCCCCccchhhcCCCCC--CEEeccCCC
Q 045507 507 LCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKL--RQLDLVNCF 558 (566)
Q Consensus 507 L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L--~~L~l~~c~ 558 (566)
|++++|.+.. |..++++++|++|++++|.+.. ..++.+++| ++|++++|.
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 8888877654 5677778888888887776655 346667777 778777753
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=9.8e-11 Score=125.36 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=97.6
Q ss_pred ccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCCccccccCccCcEEecc
Q 045507 453 HLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGDIAIIGKLKNLEILSIW 532 (566)
Q Consensus 453 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~l~ 532 (566)
.|+.|.++++. ...+|. +..+++|+.|++++|.+..+|..++.|++|++|+|++|.++.++.+++|++|++|+|+
T Consensus 442 ~L~~L~Ls~n~---l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKD---LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSC---CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred CceEEEecCCC---CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECC
Confidence 58999999886 566776 6899999999999999999999999999999999999999993399999999999999
Q ss_pred CCCCCcc--chhhcCCCCCCEEeccCCCCCccCCC
Q 045507 533 GPDIKTL--PEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 533 ~~~l~~l--P~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|.+..+ |..++.|++|++|++++ +.+..+|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCcc
Confidence 9999988 89999999999999999 67877765
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=1e-10 Score=118.42 Aligned_cols=128 Identities=17% Similarity=0.274 Sum_probs=109.8
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHh-cCccCcEEEecCCccccCC-hhhhcccccceeecc
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFS-RIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLH 510 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~ 510 (566)
+.+..+.+.+..+|... .+.++.|.++++. ...++...+. .+++|++|++++|.+..+| ..+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSC---CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCC---CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57788888888887643 4568999999886 5667776666 8999999999999999987 569999999999999
Q ss_pred CcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCCC
Q 045507 511 QYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 511 ~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|.+.. +..+..+.+|++|+|++|.+..+ |..++.+++|++|+|++ +++..+|.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~ 153 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPV 153 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCG
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCH
Confidence 999988 44689999999999999999887 66799999999999999 78888874
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=3.8e-11 Score=131.00 Aligned_cols=133 Identities=18% Similarity=0.284 Sum_probs=91.6
Q ss_pred ccccccEEEeecCCCC-CCCCC-CCCCccceEEecccc-ccccc-CCChHHHhcC------ccCcEEEecCCccccCCh-
Q 045507 428 ALKQCHAISLLNSSIP-ELPEG-LECPHLDFLLMVCKD-TLIET-NIPEKFFSRI------KKLKDVDMARMWLFSLPS- 496 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~-~~~~~-~~~~~Lr~L~l~~~~-~~~~~-~~~~~~~~~l------~~Lr~L~l~~~~~~~lp~- 496 (566)
...+++++.++.|.+. .+|.. ..+++|++|.+.++. . .. .+|..+ ..+ ++|++|++++|.+..+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l--~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI--SGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS--CHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC--ccccchHHH-HhhhccccCCCCCEEECCCCcCCccCch
Confidence 3556667777766653 34433 356677777776654 2 22 345444 333 777777777777777777
Q ss_pred -hhhcccccceeeccCcccC-C-ccccccCccCcEEeccCCCCCccchhhcCCCC-CCEEeccCCCCCccCCC
Q 045507 497 -SIDLLVNLQILCLHQYMLG-D-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTK-LRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 497 -~i~~L~~L~~L~L~~~~l~-~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~-L~~L~l~~c~~l~~lP~ 565 (566)
.++.+++|++|++++|.+. . | .++++++|++|++++|.+..+|..++.+++ |++|++++ +.+..+|.
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~ 394 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKLKYIPN 394 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS-SCCSSCCS
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC-CcCcccch
Confidence 7777888888888887777 4 5 777778888888888877788888888888 88888888 45667774
No 77
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=1.5e-10 Score=129.21 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=70.8
Q ss_pred cccEEEeecCCCCCCCCCC--CCCccceEEecccccccccCCChHHHhcC-------ccCcEEEecCCccccCChhhh--
Q 045507 431 QCHAISLLNSSIPELPEGL--ECPHLDFLLMVCKDTLIETNIPEKFFSRI-------KKLKDVDMARMWLFSLPSSID-- 499 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l-------~~Lr~L~l~~~~~~~lp~~i~-- 499 (566)
+++.+.++.|.+..+|... .+++|+.|.+.++. ...+|..++... ++|+.|++++|.+..+|..+.
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~---L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNL---MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC---CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc---CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence 3444444444444443321 34555555555543 234444433221 256666666666666666554
Q ss_pred cccccceeeccCcccCC-ccccccCccCcEEeccC------CC-CCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 500 LLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWG------PD-IKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 500 ~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~------~~-l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
.+++|+.|+|++|.+.. |..++++++|+.|+|++ |. ...+|..++.+++|++|+|++ +.+..+|.
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~-N~L~~Ip~ 823 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS-NDIRKVDE 823 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS-SCCCBCCS
T ss_pred cCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC-CCCCccCH
Confidence 56666666666666655 55666666666666654 32 335566666666666666666 34466664
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.13 E-value=1.7e-10 Score=115.19 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=40.7
Q ss_pred ccCcEEEecCCccccC-ChhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEecc
Q 045507 479 KKLKDVDMARMWLFSL-PSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLV 555 (566)
Q Consensus 479 ~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~ 555 (566)
++|++|++++|.+..+ |..++.+++|++|++++|.+.. +..+..+++|++|++++|.+..+|..++.+++|++|+++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 3444444444444433 3444445555555555555444 224445555555555555555555555555555555555
Q ss_pred CCCCCccCC
Q 045507 556 NCFQLKVIA 564 (566)
Q Consensus 556 ~c~~l~~lP 564 (566)
+ +.+..+|
T Consensus 272 ~-N~i~~~~ 279 (330)
T 1xku_A 272 N-NNISAIG 279 (330)
T ss_dssp S-SCCCCCC
T ss_pred C-CcCCccC
Confidence 4 3444443
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=6.6e-11 Score=124.72 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=81.3
Q ss_pred ccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccccccee
Q 045507 430 KQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 507 (566)
.++++++++.|.+..++.. ..+++|+.|.+++|.. ....|..+...+++|++|++++|.+..+|.. ..+++|++|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L 196 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTL 196 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC--CCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEE
Confidence 4566666666666554321 2466677777766653 2223444434667777777777777666543 347777777
Q ss_pred eccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCC
Q 045507 508 CLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 508 ~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c 557 (566)
+|++|.++. |+.++.+++|++|+|++|.+..+|..++.+++|++|++++|
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 777777777 66677777777777777777777777777777777777774
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.12 E-value=1.1e-10 Score=113.33 Aligned_cols=124 Identities=22% Similarity=0.224 Sum_probs=58.9
Q ss_pred ccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc--CChhhhcccccc
Q 045507 430 KQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS--LPSSIDLLVNLQ 505 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~L~~L~ 505 (566)
.+++++.++.|.+..++. ...+++|+.|.+.++. ...++...+..+++|++|++++|.+.. +|..++.+++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN---LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC---CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCC---ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 344555555544433321 1234444555444433 222222223444455555555554443 344455555555
Q ss_pred eeeccCcccCC-----------------------------ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEecc
Q 045507 506 ILCLHQYMLGD-----------------------------IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLV 555 (566)
Q Consensus 506 ~L~L~~~~l~~-----------------------------p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~ 555 (566)
+|++++|.+.. |.......+|++|++++|.+..+|.. ++.+++|++|+++
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 55555544433 22233333566666666666666554 3566666666666
Q ss_pred C
Q 045507 556 N 556 (566)
Q Consensus 556 ~ 556 (566)
+
T Consensus 233 ~ 233 (276)
T 2z62_A 233 T 233 (276)
T ss_dssp S
T ss_pred C
Confidence 5
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1e-10 Score=126.66 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=66.2
Q ss_pred ccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhcccccce
Q 045507 430 KQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNLQI 506 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~ 506 (566)
.+++.+.+++|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.+..+|.. ++.+++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc---CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 455556665555544432 2345556666665554 3444444445556666666666665555544 355566666
Q ss_pred eeccCcccCC--ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 507 LCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 507 L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
|+|++|.+.. |..++++++|++|++++|.+..+| ++.+++|++|++++
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 201 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCS
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhccc
Confidence 6666665554 334555666666666665555553 44455555555554
No 82
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=3.6e-10 Score=113.62 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=110.8
Q ss_pred ccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 426 EDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 426 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
....++++++.+.++.+..++....+++|++|.+.++. ...++. +..+++|++|++++|.+..+| .++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~---i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ---ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCc---cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 34567899999999999888877789999999999875 455655 689999999999999999876 689999999
Q ss_pred eeeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 506 ILCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 506 ~L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+|++++|.+...+.+..+++|++|++++|.....+..++.+++|++|++++| .+..+|
T Consensus 114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~ 171 (347)
T 4fmz_A 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVT 171 (347)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCG
T ss_pred EEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCch
Confidence 9999999998843499999999999999944444445999999999999995 454443
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.11 E-value=9e-11 Score=116.54 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=94.2
Q ss_pred cccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCC-ChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 429 LKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNI-PEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
..+++.+.+..|.+..++.. ..+++|+.|.+.++.- ..+ +..++..+++|++|++++|.+..+|... .+++|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~ 194 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLK 194 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCC
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC---CcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCC
Confidence 45677788888777665432 3567888888877653 333 3334456788888888888888776443 488888
Q ss_pred eeeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCC
Q 045507 506 ILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 506 ~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c 557 (566)
+|++++|.+.. |+.+..+++|++|++++|.+..+|..++.+++|++|++++|
T Consensus 195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred EEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 88888888888 77788888888888888888888888888888888888884
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.11 E-value=1.6e-10 Score=125.85 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=101.4
Q ss_pred cCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh-hhhcccccceeeccCcccCC-
Q 045507 439 NSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVNLQILCLHQYMLGD- 516 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~- 516 (566)
..++..+|... -+.++.|++++|. ...++...|..+++|++|++++|.++.+|+ .|++|++|++|+|++|+++.
T Consensus 40 ~~~l~~vP~~l-p~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 40 ELNFYKIPDNL-PFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TSCCSSCCSSS-CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCcCccCCCC-CcCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 33556666532 2479999999886 677887778999999999999999999864 68999999999999999988
Q ss_pred c-cccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccC
Q 045507 517 I-AIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 517 p-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~l 563 (566)
| ..+++|.+|++|+|++|.+..+|.. |++|++|++|++++ +.+..+
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~ 163 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSF 163 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccC
Confidence 5 4689999999999999999999864 89999999999999 566544
No 85
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=1.6e-10 Score=103.81 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=41.1
Q ss_pred ccCcEEEecCCccccC-ChhhhcccccceeeccCcccCC-ccc-cccCccCcEEeccCCCCCccchh-hcCCCCCCEEec
Q 045507 479 KKLKDVDMARMWLFSL-PSSIDLLVNLQILCLHQYMLGD-IAI-IGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDL 554 (566)
Q Consensus 479 ~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l 554 (566)
++|++|++++|.+..+ |..++.+++|++|+|++|.++. |.. +.++.+|++|+|++|.+..+|.. ++.+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4455555555555554 3345555555555555555555 332 34555555555555555555543 555555555555
Q ss_pred cC
Q 045507 555 VN 556 (566)
Q Consensus 555 ~~ 556 (566)
++
T Consensus 113 ~~ 114 (174)
T 2r9u_A 113 YN 114 (174)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 86
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.3e-10 Score=104.76 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=90.5
Q ss_pred ceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeeccCcccCC--ccccccCccCcEEecc
Q 045507 455 DFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIW 532 (566)
Q Consensus 455 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~ 532 (566)
+.+.+.++. ...+|..+ .+.|+.|++++|.+..+|..+..+++|++|+|++|.++. +..+..+.+|++|+|+
T Consensus 13 ~~l~~~~~~---l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKG---LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSC---CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC---CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 456676654 56777654 368999999999999999999999999999999999988 5679999999999999
Q ss_pred CCCCCccch-hhcCCCCCCEEeccCCCCCccCCC
Q 045507 533 GPDIKTLPE-ELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 533 ~~~l~~lP~-~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|.+..+|. .++.+++|++|+|++ +.+..+|.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~ 119 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPE 119 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCT
T ss_pred CCccCEeCHHHhCCCCCCCEEECCC-CCCCeeCh
Confidence 999998865 599999999999999 78888886
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.11 E-value=3.5e-10 Score=118.09 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=68.5
Q ss_pred cccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccce
Q 045507 427 DALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQI 506 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 506 (566)
....+++++.++.|.+..++ ...+++|+.|.+.++. ...++ +..+++|++|++++|.+..+| ++.+++|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~---l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK---LTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC---CSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCC---Cceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 34455556666655555544 3345556666665544 22332 345556666666666555554 555666666
Q ss_pred eeccCcccCCccccccCccCcEEeccCC-CCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 507 LCLHQYMLGDIAIIGKLKNLEILSIWGP-DIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 507 L~L~~~~l~~p~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|++++|.++.. .++++++|++|++++| .+..+ .++.+++|++|++++ +++..+|
T Consensus 132 L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~ 186 (457)
T 3bz5_A 132 LNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD 186 (457)
T ss_dssp EECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC
T ss_pred EECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec
Confidence 66666655552 1555666666666665 44444 256666666666666 3455444
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=5.9e-10 Score=118.62 Aligned_cols=133 Identities=16% Similarity=0.293 Sum_probs=101.7
Q ss_pred cccccccEEEeecCCCCC-CCCC-CCCCccceEEecccccccccCCCh--HHHhcCccCcEEEecCCcccc-CChh-hhc
Q 045507 427 DALKQCHAISLLNSSIPE-LPEG-LECPHLDFLLMVCKDTLIETNIPE--KFFSRIKKLKDVDMARMWLFS-LPSS-IDL 500 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~-~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~-lp~~-i~~ 500 (566)
....+++++.++.|.+.. ++.. ..+++|+.|.+.++.- ..++. ..+..+++|++|++++|.+.. +|.. +..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL---KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC---CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc---CccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 456788999999998876 3433 4688999999988763 33222 345789999999999998887 7764 677
Q ss_pred ccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 501 LVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 501 L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+++|++|++++|.+.. |..+. ++|++|++++|.+..+|..+..+++|++|++++ +++..+|.
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~ 461 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS-NQLKSVPD 461 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCCT
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCC-CcCCccCH
Confidence 8888888888888765 54443 688888888888888888888888888888888 47777775
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.10 E-value=2.2e-10 Score=124.31 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=104.3
Q ss_pred CcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 417 NEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 417 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+......| ...+..++++.+++|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.+..+
T Consensus 21 ~~~l~~iP-~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 21 NLGLNEIP-GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TSCCSSCC-TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCcccCc-CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc---cceeChhhccCccccCeeeCCCCccccc
Confidence 33344444 2356688999999998877643 2478899999998875 3445455567888999999999888775
Q ss_pred -ChhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccc-hhhcCCCCCCEEeccCCCCCccC
Q 045507 495 -PSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLP-EELGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 495 -p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~c~~l~~l 563 (566)
|..++++++|++|++++|.+.. |..++++++|++|++++|.+..++ ..+..+++|++|++++ +.+..+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 168 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYL 168 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEE
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-Cccccc
Confidence 6788888889999998888877 677888888888888888777652 2344488888888887 455444
No 90
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.10 E-value=9.1e-11 Score=115.85 Aligned_cols=133 Identities=16% Similarity=0.244 Sum_probs=105.9
Q ss_pred cccccEEEeecCCCCCCCCC-CCCCccceEEecccccccccCCCh-HHHhcCccCcEEEecCCccccC-Chhhhcccccc
Q 045507 429 LKQCHAISLLNSSIPELPEG-LECPHLDFLLMVCKDTLIETNIPE-KFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~ 505 (566)
..+++++.+++|.+..++.. ..+++|++|.+.++. ...++. ..+..+++|++|++++|.+... |..++.+++|+
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN---LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE---EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc---ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 46788888888877655543 367889999988775 344443 4567889999999999988764 56788899999
Q ss_pred eeeccCcccCC---ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCCC
Q 045507 506 ILCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 506 ~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|++++|.+.. |..+..+++|++|++++|.+..+ |..++.+++|++|++++ +.+..+|.
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 216 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDT 216 (306)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCSBCCS
T ss_pred EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-CccCccCh
Confidence 99999998764 78889999999999999988877 67899999999999999 56666653
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=2e-10 Score=124.43 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=100.7
Q ss_pred cccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh-hhhcccccc
Q 045507 429 LKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~ 505 (566)
..+++.+.+..+.+..+|.. ..+++|++|.+.++. ...++...|..+++|++|++++|.+..+|. .++.+++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 45778888888887777764 357888888888775 455555556788888888888888888764 468888888
Q ss_pred eeeccCcccCC-ccc-cccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCCCCCccCC
Q 045507 506 ILCLHQYMLGD-IAI-IGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 506 ~L~L~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
+|+|++|.+.. |+. ++++++|++|+|++|.+..+|. .++.+++|++|++++ +.+..+|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 187 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD 187 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC
Confidence 88888888887 555 4788888888888887776644 588888888888888 4555543
No 92
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.10 E-value=1.8e-10 Score=128.53 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=74.0
Q ss_pred cCccCcEEEecCCccc-cCChhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCC-ccchhhcCCCCCCEE
Q 045507 477 RIKKLKDVDMARMWLF-SLPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK-TLPEELGQLTKLRQL 552 (566)
Q Consensus 477 ~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L 552 (566)
.++.|++|++++|.+. .+|..++.+++|++|+|++|.++. |..+++|++|++|||++|++. .+|..++.|++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 3567888888888877 578889999999999999999875 888999999999999999776 788899999999999
Q ss_pred eccCCCCCccCCC
Q 045507 553 DLVNCFQLKVIAP 565 (566)
Q Consensus 553 ~l~~c~~l~~lP~ 565 (566)
++++|.--..+|.
T Consensus 710 ~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 710 DLSNNNLSGPIPE 722 (768)
T ss_dssp ECCSSEEEEECCS
T ss_pred ECcCCcccccCCC
Confidence 9998655456664
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.10 E-value=2.8e-10 Score=122.39 Aligned_cols=135 Identities=20% Similarity=0.183 Sum_probs=81.9
Q ss_pred EeCcccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccc
Q 045507 415 VRNEDVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF 492 (566)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 492 (566)
+.+.....+|. ..+.+++++.++.|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.+.
T Consensus 38 ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 38 YSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 33334444442 234567777777777666552 2356677777776664 34444444566677777777777777
Q ss_pred cCChhhhcccccceeeccCcccCC---ccccccCccCcEEeccCCCCCccchhhcCCCCC--CEEeccCC
Q 045507 493 SLPSSIDLLVNLQILCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKL--RQLDLVNC 557 (566)
Q Consensus 493 ~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L--~~L~l~~c 557 (566)
.+|.. .+++|++|++++|.+.. |..++++++|++|++++|.+... .++.+++| ++|++++|
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEES
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecc
Confidence 66665 56777777777776654 35667777777777777665442 34455555 77777664
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.10 E-value=9.5e-11 Score=116.39 Aligned_cols=131 Identities=11% Similarity=0.070 Sum_probs=106.6
Q ss_pred ccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhh-hccccccee
Q 045507 430 KQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSI-DLLVNLQIL 507 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i-~~L~~L~~L 507 (566)
.+++++.+..|.+..++. ..+++|+.|.+.++. ...++...+..+++|++|++++|.+..++ ..+ ..+++|++|
T Consensus 99 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNK---ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSC---CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECCCCccCCcCc-cccCCCCEEECCCCC---CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 577777887777765543 247889999998876 45555555678999999999999998864 445 478999999
Q ss_pred eccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 508 CLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 508 ~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
++++|.+...+....+++|++|++++|.+..+|..++.+++|++|++++ +.+..+|.
T Consensus 175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~ 231 (317)
T 3o53_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEK 231 (317)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECT
T ss_pred ECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcC-Ccccchhh
Confidence 9999999884444569999999999999999999999999999999999 58888775
No 95
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.09 E-value=1.9e-10 Score=123.29 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=107.2
Q ss_pred ccccCCcccccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh
Q 045507 419 DVWKWPNEDALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS 496 (566)
Q Consensus 419 ~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 496 (566)
.....|. ....+++++.+++|.+..++. ...+++|++|.+.++. ...++...|..+++|++|++++|.+..+|.
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCCCccCccCH
Confidence 3444443 345689999999998876542 3478899999998876 455665566889999999999999988876
Q ss_pred h-hhcccccceeeccCcccCC---ccccccCccCcEEeccCCC-CCccc-hhhcCCCCCCEEeccCCC
Q 045507 497 S-IDLLVNLQILCLHQYMLGD---IAIIGKLKNLEILSIWGPD-IKTLP-EELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 497 ~-i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~-l~~lP-~~i~~L~~L~~L~l~~c~ 558 (566)
. ++++++|++|++++|.+.. |..++++++|++|++++|. +..+| ..++.+++|++|++++|.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 5 8999999999999998764 6778899999999999885 67776 468889999999988843
No 96
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.09 E-value=1.4e-10 Score=118.70 Aligned_cols=122 Identities=19% Similarity=0.166 Sum_probs=66.7
Q ss_pred ccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeec
Q 045507 430 KQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCL 509 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 509 (566)
.+++.+.+..|.+...+....+++|+.|.+.++. ...++...+..+++|+.|++++|.+..+|..++.+++|++|++
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE---LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC---CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCc---CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEEC
Confidence 3455555555555544433445555666655543 2223223335555566666666655555555555556666666
Q ss_pred cCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 510 HQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 510 ~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
++|.+.. |..++.+++|++|++++|.+..+| ++.+++|+.|++++
T Consensus 303 ~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 303 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred CCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCC
Confidence 6665555 555555566666666666555554 55555666666655
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.09 E-value=5e-10 Score=111.89 Aligned_cols=131 Identities=24% Similarity=0.342 Sum_probs=95.4
Q ss_pred ccccccEEEeecCCCCCCCC--CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccc
Q 045507 428 ALKQCHAISLLNSSIPELPE--GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQ 505 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 505 (566)
...+++.+.++.|.+..++. ...+++|++|.+.++. ...++...+..+++|++|++++|.+..+|..+. ++|+
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK---ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc---cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 34678888888888876643 3467888888888775 445555556788888888888888888887665 7888
Q ss_pred eeeccCcccCC-c-cccccCccCcEEeccCCCCC---ccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 506 ILCLHQYMLGD-I-AIIGKLKNLEILSIWGPDIK---TLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 506 ~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~---~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|++++|.+.. | ..+.++++|++|++++|.+. ..|..++.+ +|++|++++ +.+..+|.
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~ 189 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPK 189 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCS
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCc
Confidence 88888888777 4 45788888888888888664 345556666 677777766 45555553
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=115.49 Aligned_cols=55 Identities=25% Similarity=0.233 Sum_probs=22.9
Q ss_pred cccccceeeccCcccCC--ccccccC---ccCcEEeccCCCCCccchhhcCCCCCCEEeccC
Q 045507 500 LLVNLQILCLHQYMLGD--IAIIGKL---KNLEILSIWGPDIKTLPEELGQLTKLRQLDLVN 556 (566)
Q Consensus 500 ~L~~L~~L~L~~~~l~~--p~~i~~L---~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~ 556 (566)
.+++|++|+|++|.+.. |+.++.+ ++|++|+|++|.+..+|..+. ++|++|++++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCC
Confidence 33444444444444333 3333333 244444444444444444332 3444444444
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.09 E-value=3.5e-10 Score=120.58 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=90.6
Q ss_pred ccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeec
Q 045507 430 KQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCL 509 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 509 (566)
.++++|.++.|.+..+|. .+++|+.|.+.+|. ...+|. .+++|++|++++|.+..+|. ++ ++|++|+|
T Consensus 120 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~---l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQ---LTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDV 187 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC---CSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC
T ss_pred cCCCEEECCCCcCCCCCC--cCccccEEeCCCCc---cCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEEC
Confidence 377788888887777776 57788888887776 345654 56788999999998888888 65 88999999
Q ss_pred cCcccCC-ccccccCccC-------cEEeccCCCCCccchhhcCCCCCCEEeccCCC
Q 045507 510 HQYMLGD-IAIIGKLKNL-------EILSIWGPDIKTLPEELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 510 ~~~~l~~-p~~i~~L~~L-------~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~ 558 (566)
++|.|+. |. +.. +| ++|+|++|.+..+|.+++.+++|++|+|++|+
T Consensus 188 s~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 188 STNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred cCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 9999888 66 554 77 99999999999999999999999999999853
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=1.4e-10 Score=122.32 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=110.5
Q ss_pred cccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc-CChhhh-cccccce
Q 045507 429 LKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS-LPSSID-LLVNLQI 506 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~-~L~~L~~ 506 (566)
..+++++.+++|.+..++. ..+++|+.|.+.++. ...+++..+..+++|++|++++|.+.. .|..+. .+++|++
T Consensus 98 ~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSC-SRGQGKKNIYLANNK---ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CTTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSC---CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCcCEEECcCCcCCCCCc-cccCCCCEEECCCCC---CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 3678899999998877654 357899999998886 445545456789999999999999987 456665 7999999
Q ss_pred eeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 507 LCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 507 L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|+|++|.++..+....+++|++|+|++|.+..+|.+++.+++|++|++++ +.+..+|.
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~ 231 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEK 231 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECT
T ss_pred EecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccch
Confidence 99999999884445579999999999999999999999999999999999 67777775
No 101
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.08 E-value=1.5e-10 Score=125.59 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=63.4
Q ss_pred cccccEEEeecCCCCCCCC---CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc--CChhhhcccc
Q 045507 429 LKQCHAISLLNSSIPELPE---GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS--LPSSIDLLVN 503 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~L~~ 503 (566)
..+++.+.+..|.+...+. ...+++|+.|.+.++.. ...+...+..+++|++|++++|.+.. +|..++.+++
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT---KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC---EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC---CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 3445555555554433321 12445555555554432 22222223445555555555555443 3455555555
Q ss_pred cceeeccCcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCCEEeccCCCCCccCC
Q 045507 504 LQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 504 L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|++|++++|.+.. |..++.+++|++|++++|.+..+ |..++.+++|++|++++ +++..+|
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p 537 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF-NRIETSK 537 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT-SCCCCEE
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC-CcCcccC
Confidence 5555555555444 34455555555555555544443 44455555555555555 2344444
No 102
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.07 E-value=2.7e-10 Score=112.82 Aligned_cols=134 Identities=23% Similarity=0.234 Sum_probs=97.3
Q ss_pred ccccccEEEeecCCCC-CCCCC-CCCC-ccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc-CChhhhcccc
Q 045507 428 ALKQCHAISLLNSSIP-ELPEG-LECP-HLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS-LPSSIDLLVN 503 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~-~~~~~-~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~ 503 (566)
...+++++.+..|.+. .+|.. ..++ +|+.|.+.++.. ...+|..+ ..++ |++|++++|.+.. .|..++.+++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l--~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE--EEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee--eccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 3567777777777775 44443 2455 778888777653 22445443 5555 8888888887764 5677888888
Q ss_pred cceeeccCcccCC-ccccccCccCcEEeccCCCCC-ccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 504 LQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIK-TLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 504 L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|++|++++|.+.. ++.+..+++|++|++++|.+. .+|..++.+++|++|++++|.--..+|.
T Consensus 223 L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 8899998888876 666888889999999998877 7888899999999999998533235654
No 103
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=3.5e-10 Score=118.23 Aligned_cols=132 Identities=19% Similarity=0.180 Sum_probs=109.9
Q ss_pred ccccEEEeecCCCCCCC-CC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-Chhhhcccccce
Q 045507 430 KQCHAISLLNSSIPELP-EG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQI 506 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~-~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~ 506 (566)
.+++.+.++.|.+...+ .. ..+++|+.|.+.++. ...++...+..+++|++|++++|.+..+ |..++.+++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE---INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc---ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 57999999999887543 22 468999999998886 4555555568899999999999999887 577899999999
Q ss_pred eeccCcccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEeccCCCCCccCC
Q 045507 507 LCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 507 L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|+|++|.+.. |..++.+++|++|++++|.+..+|.. +..+++|++|++++|+--...|
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999887 67899999999999999999998875 5899999999999954333333
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=114.07 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=108.8
Q ss_pred cccccccEEEeecCCCCCCCC------CCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc---CC--
Q 045507 427 DALKQCHAISLLNSSIPELPE------GLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS---LP-- 495 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~------~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~---lp-- 495 (566)
....+++.+.++.|.+..... ...+++|++|.+.++. ...++...+..+++|++|++++|.+.. +|
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 190 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH---SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA 190 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS---SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC---cchhhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence 446789999999998865321 1258899999998876 456666667889999999999998653 32
Q ss_pred hhhhcccccceeeccCcccCC-cc----ccccCccCcEEeccCCCCCcc-chhhcCC---CCCCEEeccCCCCCccCCCC
Q 045507 496 SSIDLLVNLQILCLHQYMLGD-IA----IIGKLKNLEILSIWGPDIKTL-PEELGQL---TKLRQLDLVNCFQLKVIAPN 566 (566)
Q Consensus 496 ~~i~~L~~L~~L~L~~~~l~~-p~----~i~~L~~L~~L~l~~~~l~~l-P~~i~~L---~~L~~L~l~~c~~l~~lP~~ 566 (566)
..++.+++|++|++++|.++. +. .++.+++|++|+|++|.+..+ |..++.+ ++|++|++++ +++..+|..
T Consensus 191 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~ 269 (310)
T 4glp_A 191 LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKG 269 (310)
T ss_dssp SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSC
T ss_pred HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhh
Confidence 344789999999999999987 43 257889999999999988876 8888877 6999999999 688888863
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.06 E-value=1.5e-09 Score=116.75 Aligned_cols=133 Identities=16% Similarity=0.239 Sum_probs=98.2
Q ss_pred cccccccEEEeecCCCCC-CCCC-CCCCccceEEecccccccccCCCh--HHHhcCccCcEEEecCCcccc-CChh-hhc
Q 045507 427 DALKQCHAISLLNSSIPE-LPEG-LECPHLDFLLMVCKDTLIETNIPE--KFFSRIKKLKDVDMARMWLFS-LPSS-IDL 500 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~-~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~-lp~~-i~~ 500 (566)
....+++++.++.|.+.. .+.. ..+++|+.|.+.++. ...++. ..+..+++|++|++++|.+.. +|.. +..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG---LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC---CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC---cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 456788899999988865 3333 468889999998775 344442 335788889999999998877 7754 667
Q ss_pred ccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 501 LVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 501 L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+++|++|++++|.+.. |..+. .+|++|++++|.+..+|.+++.+++|++|++++ +++..+|.
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~ 490 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPD 490 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCS-SCCCCCCT
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCC-CCCCCCCH
Confidence 7888888888887755 44433 678888888887778887777888888888887 56777775
No 106
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.06 E-value=3.6e-10 Score=118.94 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=67.4
Q ss_pred ccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-Chhhhcccccce
Q 045507 430 KQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQI 506 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~ 506 (566)
.++++|.++.|.+..++.. ..+++|+.|.+.++. ...++...+..+++|+.|++++|.+..+ |..++.+++|++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK---IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc---cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 3455555555554444432 234555555554443 2223233334555555555555554443 234555555555
Q ss_pred eeccCcccCC-c-cccccCccCcEEeccCCCCCccch-hhcCCCCCCEEeccCCCCCccCCC
Q 045507 507 LCLHQYMLGD-I-AIIGKLKNLEILSIWGPDIKTLPE-ELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 507 L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
|++++|.+.. | ..+.++++|+.|++++|.+..++. .+..+++|++|++++|+.+..+|.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 5555555554 2 335555555555555555554432 456666666666666665555553
No 107
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=4.1e-10 Score=100.79 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=48.4
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhcccccceeeccC
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNLQILCLHQ 511 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~~ 511 (566)
+.+.++.+.+..+|... .++|+.|.+.++. ...++...|..+++|++|++++|.+..+|.. +..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34555555555555322 2445555555443 3334333344555555555555555554433 34555555555555
Q ss_pred cccCC-cc-ccccCccCcEEeccCCC
Q 045507 512 YMLGD-IA-IIGKLKNLEILSIWGPD 535 (566)
Q Consensus 512 ~~l~~-p~-~i~~L~~L~~L~l~~~~ 535 (566)
|.++. |+ .+.++.+|++|+|.+|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 55544 22 34455555555555543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=1.1e-09 Score=116.68 Aligned_cols=130 Identities=22% Similarity=0.299 Sum_probs=78.7
Q ss_pred EeCcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC
Q 045507 415 VRNEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL 494 (566)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 494 (566)
+.+..+..++. ....+++.+.++.|.+..+| ..+++|++|.+.+|. ...+|. + .. +|++|++++|.+..+
T Consensus 66 Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~---l~~ip~-l-~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 66 LNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNR---LSTLPE-L-PA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp CCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC---CSCCCC-C-CT--TCCEEECCSSCCSCC
T ss_pred eCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCC---CCCcch-h-hc--CCCEEECCCCcCCCC
Confidence 33334444432 22456788888888777777 346777777777765 344555 2 22 677777777766666
Q ss_pred ChhhhcccccceeeccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 495 PSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 495 p~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|. .+++|++|+|++|.++. |. .+.+|++|+|++|.+..+|. ++ ++|++|+|++ +++..+|
T Consensus 136 p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp 196 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLP 196 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCC
T ss_pred CC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchh
Confidence 66 45666666666666665 43 45566666666666666665 44 5666666665 3555555
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.04 E-value=1.2e-09 Score=114.53 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=88.8
Q ss_pred cccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccce
Q 045507 427 DALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQI 506 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 506 (566)
....+++.+.+..|.+..++....+++|+.|.+.++. ...++. +..+++|+.|++++|.+...+. ++.+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~---l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ---LEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC---CSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc---ccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCE
Confidence 3455667777777766665555566777777776654 233333 4567777777777777776654 667777777
Q ss_pred eeccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 507 LCLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 507 L~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|++++|.+...+.+.++++|++|++++|.+..++. ++.+++|++|++++| .+..+|
T Consensus 336 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE-EEECCC
T ss_pred eECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC-cccCCc
Confidence 77777777775567777888888888777766655 777888888888773 444444
No 110
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.03 E-value=2.8e-10 Score=112.72 Aligned_cols=60 Identities=30% Similarity=0.233 Sum_probs=26.1
Q ss_pred ccccceeeccCcccCC-c--cccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccC
Q 045507 501 LVNLQILCLHQYMLGD-I--AIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 501 L~~L~~L~L~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~l 563 (566)
+++|++|++++|.+.. + ..+..+.+|++|++++|.+..+|..+. ++|++|++++ +++..+
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~ 289 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRN 289 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS-SCCCSC
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC-CCCCCC
Confidence 3444444444444433 1 223334444444444444444444443 4444444444 344433
No 111
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.03 E-value=3.8e-10 Score=121.45 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=113.1
Q ss_pred cccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCCh-hhhcccc
Q 045507 427 DALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVN 503 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~ 503 (566)
....+++++.++.|.+..++.. ..+++|++|.+.++. ...++...|..+++|++|++++|.+..+|. .++++++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc---CCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 3467899999999998876542 468999999999886 456666667899999999999999999885 6999999
Q ss_pred cceeeccCcccCC---ccccccCccCcEEeccCCCCCcc-chhhcCCCCC----CEEeccCCCCCccCCC
Q 045507 504 LQILCLHQYMLGD---IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKL----RQLDLVNCFQLKVIAP 565 (566)
Q Consensus 504 L~~L~L~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L----~~L~l~~c~~l~~lP~ 565 (566)
|++|++++|.+.. |..++++++|++|++++|.+..+ |..++.+++| ++|++++ +.+..+|+
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~-n~l~~~~~ 194 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQP 194 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT-CCCCEECT
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC-CCceecCH
Confidence 9999999999764 88999999999999999988876 4568888888 8999998 56665553
No 112
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.02 E-value=6.6e-10 Score=124.01 Aligned_cols=134 Identities=24% Similarity=0.282 Sum_probs=91.2
Q ss_pred cccccEEEeecCCCC-CCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccc-cCChhhhcccccc
Q 045507 429 LKQCHAISLLNSSIP-ELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLF-SLPSSIDLLVNLQ 505 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~-~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~ 505 (566)
..+++.+.++.|.+. .+|.. ..+++|+.|.+.++.. ...+|..+ ..+++|++|++++|.+. .+|..++.+++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML--EGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC--CSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc--cCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 445666666666654 23332 2466777777766653 33445443 56777888888877776 4677777788888
Q ss_pred eeeccCcccCC--ccccccCccCcEEeccCCCCC-ccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 506 ILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIK-TLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 506 ~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+|++++|.+.. |..++.+++|++|+|++|.+. .+|..++.+++|+.|++++|.-...+|.
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 88888887764 777788888888888888665 6777788888888888887544445553
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.02 E-value=1.3e-09 Score=120.03 Aligned_cols=127 Identities=19% Similarity=0.257 Sum_probs=107.7
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-ChhhhcccccceeeccC
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQILCLHQ 511 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~ 511 (566)
+.+..+.+.+..+|... .+++++|.+.++. ...++...|..+++|++|++++|.+..+ |..++++++|++|+|++
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 35667777777787643 3789999999886 5677877788999999999999999886 67899999999999999
Q ss_pred cccCC-cc-ccccCccCcEEeccCCCCCccc-hhhcCCCCCCEEeccCCCCCccCC
Q 045507 512 YMLGD-IA-IIGKLKNLEILSIWGPDIKTLP-EELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 512 ~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|.+.. |. .++++.+|++|++++|.+..+| ..++++++|++|++++| .+..+|
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 137 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTK 137 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccC
Confidence 99988 55 6999999999999999988886 57999999999999995 555444
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=4.5e-11 Score=110.07 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=67.9
Q ss_pred cccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceee
Q 045507 429 LKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILC 508 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~ 508 (566)
..+++.+.++.|.+..+|....+++|+.|.+.++. ...+|. .+..+++|++|++++|.+..+| .++.+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~---l~~l~~-~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNL---IKKIEN-LDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEE---ECSCSS-HHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCccccccccCCCCCEEECCCCC---cccccc-hhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 44566666666666555533345666666665554 334444 2344566666666666666655 455666666666
Q ss_pred ccCcccCC-c--cccccCccCcEEeccCCCCCccchh-----------hcCCCCCCEEe
Q 045507 509 LHQYMLGD-I--AIIGKLKNLEILSIWGPDIKTLPEE-----------LGQLTKLRQLD 553 (566)
Q Consensus 509 L~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~lP~~-----------i~~L~~L~~L~ 553 (566)
+++|.+.. + ..+..+++|++|++++|.+...+.. +..+++|++|+
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 66666655 3 2456666666666666654333211 55666666665
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.02 E-value=2.4e-09 Score=111.69 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=56.0
Q ss_pred ccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeec
Q 045507 430 KQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCL 509 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 509 (566)
.+++++.++.|.+.++|....+++|++|.+.++. ...++ +..+++|++|++++|.+..+| ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN---ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC---CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCc---CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 3445555555554444433344555555554443 22232 244455555555555554443 444555555555
Q ss_pred cCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCC
Q 045507 510 HQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 510 ~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~ 558 (566)
++|.+...+ ++++++|++|++++|.+..+| ++.+++|++|++++|.
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCS
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCC
Confidence 555544411 445555555555555444443 4455555555555543
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=5.4e-10 Score=102.22 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=88.1
Q ss_pred ceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh--hhcccccceeeccCcccCC--ccccccCccCcEEe
Q 045507 455 DFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS--IDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILS 530 (566)
Q Consensus 455 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~ 530 (566)
+++.+.++. ...+|..+ ...|++|++++|.+..+|.. ++.+++|++|+|++|.++. |..++.+.+|++|+
T Consensus 11 ~~l~~s~~~---l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRG---LKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSC---CSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCC---cCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 678887765 56777654 33899999999999998864 8999999999999999988 67899999999999
Q ss_pred ccCCCCCccchh-hcCCCCCCEEeccCCCCCccCC
Q 045507 531 IWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 531 l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP 564 (566)
|++|.+..+|.. ++.+++|++|++++ +++..++
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 118 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYD-NQISCVM 118 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCS-SCCCEEC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCC-CcCCeeC
Confidence 999999988655 89999999999999 6776554
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.02 E-value=2.2e-09 Score=112.57 Aligned_cols=123 Identities=21% Similarity=0.273 Sum_probs=75.8
Q ss_pred ccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccccccee
Q 045507 428 ALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 507 (566)
...+++.+.+..|.+..++....+++|+.|.+.++. ...++. +..+++|+.|++++|.+..+|. ++.+++|++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~---l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ---ISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC---CCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc---cCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEE
Confidence 344555555555555544444455566666665554 233333 3566667777777766666554 5667777777
Q ss_pred eccCcccCCccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCC
Q 045507 508 CLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 508 ~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c 557 (566)
++++|.+.....++.+++|++|++++|.+..+| .+..+++|+.|++++|
T Consensus 315 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp ECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS
T ss_pred ECcCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCC
Confidence 777777666222667777777777777666664 5777777777777774
No 118
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.02 E-value=4.8e-10 Score=120.14 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=105.5
Q ss_pred EEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccceeeccCcc
Q 045507 435 ISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLHQYM 513 (566)
Q Consensus 435 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 513 (566)
...+.+.+..+|... .++|++|.+.++. ...++...+..+++|++|++++|.+..+| ..++.+++|++|++++|.
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccccccccC-CCCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 455566777777643 4799999999886 44554445689999999999999998876 789999999999999999
Q ss_pred cCC-cc-ccccCccCcEEeccCCCCCc--cchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 514 LGD-IA-IIGKLKNLEILSIWGPDIKT--LPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 514 l~~-p~-~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+.. |+ .++++++|++|++++|.+.. .|..++.+++|++|++++|..+..+|.
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence 888 54 59999999999999998875 467899999999999999766777663
No 119
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1e-09 Score=98.57 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=89.7
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChh-hhcccccceeeccC
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSS-IDLLVNLQILCLHQ 511 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~~ 511 (566)
+.+.++.+.+..+|... .++|+.|.+.++. ...++...|..+++|++|++++|.+..+|.. ++.+++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56778888888887654 3889999998886 5667666678999999999999999999876 58899999999999
Q ss_pred cccCC-ccc-cccCccCcEEeccCCCCCccchhhc
Q 045507 512 YMLGD-IAI-IGKLKNLEILSIWGPDIKTLPEELG 544 (566)
Q Consensus 512 ~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP~~i~ 544 (566)
|.+.. |+. +..+.+|++|+|++|.+...|..+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 99988 554 8899999999999998877665443
No 120
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.00 E-value=1.1e-09 Score=108.48 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=93.3
Q ss_pred cccccccEEEeecCCCCCCCCCC-CC-----CccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc---CChh
Q 045507 427 DALKQCHAISLLNSSIPELPEGL-EC-----PHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS---LPSS 497 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~~~~~-~~-----~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~---lp~~ 497 (566)
....+++++.++.|.+...|... .+ ++|++|.+.++. ...++...+..+++|++|++++|.+.. +|..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH---SLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS---CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC---CccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 34567788888888776665332 22 778888887765 455554555778888888888887543 3444
Q ss_pred h--hcccccceeeccCcccCC-c----cccccCccCcEEeccCCCCCccc--hhhcCCCCCCEEeccCCCCCccCCC
Q 045507 498 I--DLLVNLQILCLHQYMLGD-I----AIIGKLKNLEILSIWGPDIKTLP--EELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 498 i--~~L~~L~~L~L~~~~l~~-p----~~i~~L~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+ +.+++|++|++++|.+.. + ..+.++++|++|++++|.+...+ ..+..+++|++|++++ +.+..+|.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~ 270 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPK 270 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT-SCCSSCCS
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC-CccChhhh
Confidence 4 677888888888888775 2 22346788888888888777654 3456678888888888 56777775
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.98 E-value=4e-09 Score=113.76 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=68.8
Q ss_pred eEEEeCcccccCCcccccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcc
Q 045507 412 VFLVRNEDVWKWPNEDALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWL 491 (566)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~ 491 (566)
.+.+.+..+..+|. ..+.+++.|.++.|.+..+|. .+++|++|.+++|. ...+|. .+++|++|++++|.+
T Consensus 44 ~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~---l~~lp~----~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 44 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ---LTSLPV----LPPGLLELSIFSNPL 113 (622)
T ss_dssp EEECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC---CSCCCC----CCTTCCEEEECSCCC
T ss_pred EEEecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc---CCcCCC----CCCCCCEEECcCCcC
Confidence 34444445554443 234678888888888887776 56788888887775 445554 567777777777777
Q ss_pred ccCChhhhcccccceeeccCcccCC-ccccccCccCcEEeccCCCCCccc
Q 045507 492 FSLPSSIDLLVNLQILCLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLP 540 (566)
Q Consensus 492 ~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 540 (566)
..+|. .+.+|++|++++|+++. |.. +++|++|++++|.+..+|
T Consensus 114 ~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLP 157 (622)
T ss_dssp CCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC
T ss_pred CCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcC
Confidence 77665 34555555555555554 332 244555555555444433
No 122
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.96 E-value=1.2e-09 Score=123.29 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=104.2
Q ss_pred cEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCC-ccccC-Chhhhcccccceeecc
Q 045507 433 HAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM-WLFSL-PSSIDLLVNLQILCLH 510 (566)
Q Consensus 433 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~l-p~~i~~L~~L~~L~L~ 510 (566)
+.+..+.+++..+|. ..+++++|.++++. ...++...|..+++|++|++++| .+..+ |..++++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 345667788888887 56899999999876 44555555689999999999999 44555 7889999999999999
Q ss_pred CcccCC--ccccccCccCcEEeccCCCCCc-cchh--hcCCCCCCEEeccCCCCCccC
Q 045507 511 QYMLGD--IAIIGKLKNLEILSIWGPDIKT-LPEE--LGQLTKLRQLDLVNCFQLKVI 563 (566)
Q Consensus 511 ~~~l~~--p~~i~~L~~L~~L~l~~~~l~~-lP~~--i~~L~~L~~L~l~~c~~l~~l 563 (566)
+|.+.. |..++++.+|++|+|++|.+.. +|.. +++|++|++|++++| .+..+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~ 138 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSL 138 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-ccccc
Confidence 999887 7899999999999999998875 5665 999999999999994 55544
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.95 E-value=4.1e-09 Score=109.91 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=75.3
Q ss_pred ccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceeec
Q 045507 430 KQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILCL 509 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 509 (566)
.+++++.++.|.+..+|....+++|+.|.+.++. ...+|. ...+|++|++++|.+..+| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~---l~~lp~----~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS---LKKLPD----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC---CSCCCC----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCc---CcccCC----CcccccEEECcCCcCCcCc-cccCCCCCCEEEC
Confidence 4566666666666656544456666666666554 233442 1245666666666666666 4666777777777
Q ss_pred cCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 510 HQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 510 ~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
++|.+.. |.. ..+|++|++++|.+..+| .++.+++|++|++++ +++..+|.
T Consensus 203 ~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~-N~l~~l~~ 254 (454)
T 1jl5_A 203 DNNSLKKLPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADN-NLLKTLPD 254 (454)
T ss_dssp CSSCCSSCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCS
T ss_pred CCCcCCcCCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCC-CcCCcccc
Confidence 7766655 332 246666777776666676 377777777777777 45555553
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=3.9e-09 Score=95.00 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=98.0
Q ss_pred eCcccccCCcccccccccEEEeecCCCCCCCCC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc
Q 045507 416 RNEDVWKWPNEDALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS 493 (566)
Q Consensus 416 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 493 (566)
.+.....++ ...+.+++++.+.+|.+..++.. ..+++|++|.+.++. ...++...+..+++|++|++++|.+..
T Consensus 15 ~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 15 NSKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp CSSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc---ceEeChhHccCCCccCEEECCCCCccc
Confidence 333444444 33457899999999999877653 468999999999886 567887777899999999999999999
Q ss_pred CChh-hhcccccceeeccCcccCC-ccc-cccCccCcEEeccCCCCCcc
Q 045507 494 LPSS-IDLLVNLQILCLHQYMLGD-IAI-IGKLKNLEILSIWGPDIKTL 539 (566)
Q Consensus 494 lp~~-i~~L~~L~~L~L~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~l 539 (566)
+|.. ++.+++|++|++++|.+.. |.. +..+.+|++|++++|.+..-
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8864 6899999999999999988 554 58899999999999976543
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.95 E-value=6.5e-09 Score=108.35 Aligned_cols=122 Identities=21% Similarity=0.208 Sum_probs=78.3
Q ss_pred ccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccccccee
Q 045507 428 ALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 507 (566)
.+.+++++.++.|.+..+|.. .++|+.|.+.++. ...++. ..++|++|++++|.+..+| +++.+++|++|
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~---l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNN---LKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSC---CSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCc---cCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 356788888888877776643 4677777776654 233332 1256777777777777766 46777777777
Q ss_pred eccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCC
Q 045507 508 CLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 508 ~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
++++|.+.. |..+ .+|++|++++|.+..+| +++.+++|++|++++ +.+..+|
T Consensus 159 ~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~-N~l~~l~ 211 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLP 211 (454)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCC
T ss_pred ECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCC-CcCCcCC
Confidence 777777666 4332 46777777777666666 466677777776666 3455444
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.94 E-value=6.2e-09 Score=112.32 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=96.3
Q ss_pred ccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccccccee
Q 045507 428 ALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 507 (566)
.+.+++.+.++.|.+..+|.. .++|+.|.+.+|. ...+|. .+++|+.|++++|.++.+| ..+++|++|
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~---l~~l~~----~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L 246 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR---LTSLPA----LPSGLKELIVSGNRLTSLP---VLPSELKEL 246 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC---CSSCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCc---ccccCC----CCCCCCEEEccCCccCcCC---CCCCcCcEE
Confidence 356788888888888776653 5788888887765 445553 3578999999999999988 456899999
Q ss_pred eccCcccCC-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCC
Q 045507 508 CLHQYMLGD-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 508 ~L~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~ 558 (566)
++++|.++. |. .+.+|++|+|++|.+..+|..++++++|+.|+|++|+
T Consensus 247 ~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 247 MVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 999999988 65 6789999999999999999999999999999999954
No 127
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.93 E-value=1.9e-09 Score=116.99 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=111.0
Q ss_pred cccccccEEEeecCCCCCC-CCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-Chhhhcccc
Q 045507 427 DALKQCHAISLLNSSIPEL-PEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PSSIDLLVN 503 (566)
Q Consensus 427 ~~~~~~r~l~l~~~~~~~~-~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~ 503 (566)
....+++++.++.|.+..+ |.. ..+++|++|.+.++. ...++...+..+++|++|++++|.+..+ |..++++++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP---LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCc---ccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 3467899999999998765 332 478999999999886 3455555568999999999999999987 678999999
Q ss_pred cceeeccCcccCC--ccccccCccCcEEeccCCCCCcc-chhhcCCCCCC--EEeccCCCCCccCCC
Q 045507 504 LQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL-PEELGQLTKLR--QLDLVNCFQLKVIAP 565 (566)
Q Consensus 504 L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L~--~L~l~~c~~l~~lP~ 565 (566)
|++|++++|.+.. ++.+..+++|++|++++|.+..+ |..++.+++|+ +|++++ +.+..+|+
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~-n~l~~~~~ 196 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-NDIAGIEP 196 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT-CCCCEECT
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC-CccCccCh
Confidence 9999999999876 35555699999999999988877 66799999999 899999 46665553
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=8.2e-11 Score=108.28 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=101.0
Q ss_pred cccEEEeecC--CCCCCCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhccccccee
Q 045507 431 QCHAISLLNS--SIPELPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQIL 507 (566)
Q Consensus 431 ~~r~l~l~~~--~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 507 (566)
.++...+.+. .+..+|.. ..+++|+.|.+.++. ...+| .+..+++|++|++++|.+..+|..++.+++|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~---l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN---IEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE---ESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC---Ccccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 3444445443 33444432 368899999998876 45677 4578999999999999999999999989999999
Q ss_pred eccCcccCCccccccCccCcEEeccCCCCCccch--hhcCCCCCCEEeccCCC
Q 045507 508 CLHQYMLGDIAIIGKLKNLEILSIWGPDIKTLPE--ELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 508 ~L~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~c~ 558 (566)
++++|.+...+.++.+++|++|++++|.+..+|. .++.+++|++|++++|.
T Consensus 99 ~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 9999999994479999999999999999998875 79999999999999853
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=3.5e-09 Score=94.71 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=83.7
Q ss_pred cceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-ChhhhcccccceeeccCcccCC-cc-ccccCccCcEEe
Q 045507 454 LDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PSSIDLLVNLQILCLHQYMLGD-IA-IIGKLKNLEILS 530 (566)
Q Consensus 454 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-p~-~i~~L~~L~~L~ 530 (566)
.+.+.+.++. ...+|..+ .+.|++|++++|.+..+ |..++.+++|++|+|++|.+.. |+ .+..+.+|++|+
T Consensus 11 ~~~l~~s~n~---l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKS---LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSC---CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCC---cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 4677887765 56677654 47899999999999988 5678999999999999999888 54 458899999999
Q ss_pred ccCCCCCccchh-hcCCCCCCEEeccCCCCCcc
Q 045507 531 IWGPDIKTLPEE-LGQLTKLRQLDLVNCFQLKV 562 (566)
Q Consensus 531 l~~~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~ 562 (566)
|++|.+..+|.. ++.+++|++|+|++ +.+..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~~~c 116 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLN-NPWDC 116 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS-SCBCT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCC-CCCCC
Confidence 999999988875 88999999999998 55443
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.83 E-value=7.2e-09 Score=104.27 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=87.4
Q ss_pred EEeCcccccCCcccccccccEEEeecCCCCCCCCC--CCCCccceEEecccccc-----------------------ccc
Q 045507 414 LVRNEDVWKWPNEDALKQCHAISLLNSSIPELPEG--LECPHLDFLLMVCKDTL-----------------------IET 468 (566)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~-----------------------~~~ 468 (566)
.+.+..+..+|. ..+.+++.|.++.|.+..++.. ..+++|+.|.++++.-. ...
T Consensus 15 ~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 15 LCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp EEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred EecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 344444555543 3456788888888888777653 36788888888766420 012
Q ss_pred CCChHHHhcCccCcEEEecCCccccCChh--------------------------hhcc-cccceeeccCcccCC-cccc
Q 045507 469 NIPEKFFSRIKKLKDVDMARMWLFSLPSS--------------------------IDLL-VNLQILCLHQYMLGD-IAII 520 (566)
Q Consensus 469 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--------------------------i~~L-~~L~~L~L~~~~l~~-p~~i 520 (566)
.++...|..+++|++|++++|.+..+|.. +..+ ..|++|+|++|.++. |..+
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 23333345566666666666655543311 1111 234555555555555 5555
Q ss_pred ccCccCcEEeccC-CCCCccchh-hcCCCCCCEEeccCCCCCccCCC
Q 045507 521 GKLKNLEILSIWG-PDIKTLPEE-LGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 521 ~~L~~L~~L~l~~-~~l~~lP~~-i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
....+|+.|++.+ +.+..+|.+ ++.+++|++|++++ +++..+|.
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~ 219 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPS 219 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCS
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccCh
Confidence 5555666666654 356666654 46777777777777 57777775
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.78 E-value=1.5e-08 Score=101.87 Aligned_cols=134 Identities=18% Similarity=0.136 Sum_probs=106.1
Q ss_pred ccccccEEEeecCCCCCCCCCC--CCCccceEEecccccccccCCChHHHhcC-ccCcEEEecCCccccCChhhhccccc
Q 045507 428 ALKQCHAISLLNSSIPELPEGL--ECPHLDFLLMVCKDTLIETNIPEKFFSRI-KKLKDVDMARMWLFSLPSSIDLLVNL 504 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~~~~lp~~i~~L~~L 504 (566)
...+++++.+..|.+..++... ...++..|.+.++.. ...++...|..+ ..+++|++++|.++.+|..+....+|
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccc--cccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 4578999999999988776543 345566677766544 556665555555 46899999999999999887778899
Q ss_pred ceeeccCc-ccCC-cc-ccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCCCCCccCCC
Q 045507 505 QILCLHQY-MLGD-IA-IIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNCFQLKVIAP 565 (566)
Q Consensus 505 ~~L~L~~~-~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c~~l~~lP~ 565 (566)
+.|++.++ .+.. |. .+..+.+|++|+|++|.+..+|. +.+.+|++|.+.+|++++.+|.
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCC
Confidence 99999865 4777 54 56899999999999999999997 4578899999989999999884
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.77 E-value=4.1e-09 Score=105.29 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=100.8
Q ss_pred ccccccEEEeecCCCCC--CCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCC-cccc--CChhhhcc
Q 045507 428 ALKQCHAISLLNSSIPE--LPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM-WLFS--LPSSIDLL 501 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~--~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~--lp~~i~~L 501 (566)
...+++++.+++|.+.. ++.. ..+++|++|.+.++.. ....+. .+..+++|++|++++| .+.. +|..++.+
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL--SDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC--CHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc--CHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 45788999999887643 3322 3678999999987752 223333 3467899999999999 6763 67778889
Q ss_pred cccceeeccCc-ccCC---ccccccCc-cCcEEeccCCC--C--CccchhhcCCCCCCEEeccCCCCCc
Q 045507 502 VNLQILCLHQY-MLGD---IAIIGKLK-NLEILSIWGPD--I--KTLPEELGQLTKLRQLDLVNCFQLK 561 (566)
Q Consensus 502 ~~L~~L~L~~~-~l~~---p~~i~~L~-~L~~L~l~~~~--l--~~lP~~i~~L~~L~~L~l~~c~~l~ 561 (566)
++|++|++++| .++. +..+..++ +|++|++++|. + ..+|..++.+++|++|++++|..+.
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 99999999999 7775 56688899 99999999984 4 4678888899999999999976443
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=1.6e-08 Score=101.44 Aligned_cols=81 Identities=17% Similarity=0.066 Sum_probs=39.5
Q ss_pred hcCccCcEEEecC-CccccCC-hhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCccchhhcCCCCCCE
Q 045507 476 SRIKKLKDVDMAR-MWLFSLP-SSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQ 551 (566)
Q Consensus 476 ~~l~~Lr~L~l~~-~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~ 551 (566)
..+.+|+.|+|++ |.+..+| ..|+.|.+|++|+|++|.|.. |..+++|.+|++|+|++|.+..+|..+....+|+.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~ 107 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceE
Confidence 4444555555553 4555444 344555555555555555444 23445555555555555555555444332223555
Q ss_pred EeccC
Q 045507 552 LDLVN 556 (566)
Q Consensus 552 L~l~~ 556 (566)
|+|.+
T Consensus 108 l~l~~ 112 (347)
T 2ifg_A 108 LVLSG 112 (347)
T ss_dssp EECCS
T ss_pred EEeeC
Confidence 55554
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.74 E-value=2e-09 Score=107.54 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=103.0
Q ss_pred ccccccEEEeecCCCCC-CC-CCCCCCccceEEeccccccccc--CCChHHHhcCccCcEEEecCC-cccc--CChhhhc
Q 045507 428 ALKQCHAISLLNSSIPE-LP-EGLECPHLDFLLMVCKDTLIET--NIPEKFFSRIKKLKDVDMARM-WLFS--LPSSIDL 500 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~-~~-~~~~~~~Lr~L~l~~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~~-~~~~--lp~~i~~ 500 (566)
...+++++.+.+|.+.. .+ ....+++|++|.+.++.. .. .+ ..++..+++|+.|++++| .+.. +|..++.
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~--l~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG--FSEFAL-QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS--CCHHHH-HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC--CCHHHH-HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 45689999999987652 12 123589999999998743 22 23 334578999999999999 8875 6788899
Q ss_pred cc-ccceeeccCc--ccCC---ccccccCccCcEEeccCCC-CC-ccchhhcCCCCCCEEeccCCCC
Q 045507 501 LV-NLQILCLHQY--MLGD---IAIIGKLKNLEILSIWGPD-IK-TLPEELGQLTKLRQLDLVNCFQ 559 (566)
Q Consensus 501 L~-~L~~L~L~~~--~l~~---p~~i~~L~~L~~L~l~~~~-l~-~lP~~i~~L~~L~~L~l~~c~~ 559 (566)
++ +|++|++++| .++. |..+.++++|++|++++|. +. ..|..++.+++|++|++++|..
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 99 9999999999 4553 6778899999999999997 54 5677899999999999999863
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.68 E-value=6.2e-09 Score=106.23 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=85.6
Q ss_pred cccccEEEeecCCCCCC-----CCC-CCC---------CccceEEecccccccccCCCh--HHHhcCccCcEEEecCCcc
Q 045507 429 LKQCHAISLLNSSIPEL-----PEG-LEC---------PHLDFLLMVCKDTLIETNIPE--KFFSRIKKLKDVDMARMWL 491 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~-----~~~-~~~---------~~Lr~L~l~~~~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~ 491 (566)
..++++|.++.|.+... +.. ..+ ++|++|.+.++.-. ...++. ..+..+++|+.|++++|.+
T Consensus 121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-NGSMKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-GGGHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-cHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 45777777777766321 110 112 67888888766420 012221 2345677888888888877
Q ss_pred c------cCChhhhcccccceeeccCcccC-----C-ccccccCccCcEEeccCCCCCc-----cchhh--cCCCCCCEE
Q 045507 492 F------SLPSSIDLLVNLQILCLHQYMLG-----D-IAIIGKLKNLEILSIWGPDIKT-----LPEEL--GQLTKLRQL 552 (566)
Q Consensus 492 ~------~lp~~i~~L~~L~~L~L~~~~l~-----~-p~~i~~L~~L~~L~l~~~~l~~-----lP~~i--~~L~~L~~L 552 (566)
. -.|..+..+++|++|+|++|.+. . |..+..+++|++|+|++|.+.. +|..+ +.+++|++|
T Consensus 200 ~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 6 23336777888888888888874 3 6677788888888888887654 46666 448888888
Q ss_pred eccCCCCCcc
Q 045507 553 DLVNCFQLKV 562 (566)
Q Consensus 553 ~l~~c~~l~~ 562 (566)
+|++| .+..
T Consensus 280 ~L~~n-~i~~ 288 (386)
T 2ca6_A 280 RLQYN-EIEL 288 (386)
T ss_dssp ECCSS-CCBH
T ss_pred ECcCC-cCCH
Confidence 88884 4443
No 136
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.63 E-value=8.9e-08 Score=95.98 Aligned_cols=107 Identities=9% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCCCCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCC------CHHHHHHHHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNP------NIKIIQGDIAEK 219 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~------~~~~i~~~i~~~ 219 (566)
|......|+||+.+++.|.+++..+ +++.|+|++|+|||||++++++ ..+|+++.... +...+...+...
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHH
Confidence 3344567999999999999988754 7999999999999999999998 46677665432 566667777665
Q ss_pred cCC-----------------CCc--ccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 220 LGL-----------------VSC--EKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 220 l~~-----------------~~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
+.. ..+ .....+....+.+.....++++||+||++..
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~ 140 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYL 140 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGG
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHH
Confidence 542 000 0112223344444443213899999999764
No 137
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.63 E-value=1.3e-07 Score=97.15 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCccchHHHHHHHHHHH-h----c--CCceEEEE--EecCCCcHHHHHHHHhc---c----------eEEEEeccCCCHH
Q 045507 153 ESFESRLSTLKAIQNAL-S----D--LNVSIIGV--YGMGGIGKTTLVKEVAR---K----------VDFSEVSQNPNIK 210 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L-~----~--~~~~vv~I--~G~gGiGKTtLa~~v~~---~----------~~wv~v~~~~~~~ 210 (566)
..++||+.+++++..++ . . ...+.+.| +|++|+||||||+.+++ . .+|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999988 4 2 24566777 99999999999999987 1 3455555777888
Q ss_pred HHHHHHHHHcCCCCcc--cchHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 211 IIQGDIAEKLGLVSCE--KVETRRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 211 ~i~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
.+...|+.+++..... .+..+....+.+.+. .+++++||+||++..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 9999999998765332 123344555665554 257999999999763
No 138
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.63 E-value=7.2e-09 Score=105.76 Aligned_cols=131 Identities=16% Similarity=0.122 Sum_probs=101.7
Q ss_pred ccccEEEeecCCCC--CCCC----CCCCCccceEEeccccccc--ccCCChHHHhcCccCcEEEecCCcc-----ccCCh
Q 045507 430 KQCHAISLLNSSIP--ELPE----GLECPHLDFLLMVCKDTLI--ETNIPEKFFSRIKKLKDVDMARMWL-----FSLPS 496 (566)
Q Consensus 430 ~~~r~l~l~~~~~~--~~~~----~~~~~~Lr~L~l~~~~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~-----~~lp~ 496 (566)
.+++++.++.|.+. .++. ...+++|++|.+.++.-.. ...+....+..+++|++|++++|.+ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 58899999999885 2331 1257899999998875200 0002221346889999999999998 56889
Q ss_pred hhhcccccceeeccCcccCC------cccc--ccCccCcEEeccCCCCCc-----cchhh-cCCCCCCEEeccCCCCCc
Q 045507 497 SIDLLVNLQILCLHQYMLGD------IAII--GKLKNLEILSIWGPDIKT-----LPEEL-GQLTKLRQLDLVNCFQLK 561 (566)
Q Consensus 497 ~i~~L~~L~~L~L~~~~l~~------p~~i--~~L~~L~~L~l~~~~l~~-----lP~~i-~~L~~L~~L~l~~c~~l~ 561 (566)
.+..+++|++|+|++|.+.. |..+ +++++|++|+|++|.+.. +|..+ .++++|++|++++| .+.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~ 316 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS 316 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCC
Confidence 99999999999999999875 2445 449999999999998887 99988 77999999999995 444
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=8e-08 Score=97.01 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=62.8
Q ss_pred cccEEEeecCCCCCCCCC--CC-----CCccceEEecccccccccCCChH----HHhcC-ccCcEEEecCCccccCCh-h
Q 045507 431 QCHAISLLNSSIPELPEG--LE-----CPHLDFLLMVCKDTLIETNIPEK----FFSRI-KKLKDVDMARMWLFSLPS-S 497 (566)
Q Consensus 431 ~~r~l~l~~~~~~~~~~~--~~-----~~~Lr~L~l~~~~~~~~~~~~~~----~~~~l-~~Lr~L~l~~~~~~~lp~-~ 497 (566)
+++++.+++|.+...... .. +++|++|.+.++.- ...+.. .+..+ ++|++|++++|.+...+. .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL---SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG---GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC---ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 566666666655432111 11 15666666665542 222222 12223 566666666666655442 2
Q ss_pred h----hc-ccccceeeccCcccCC------ccccccCc-cCcEEeccCCCCCccc-h----hhcCC-CCCCEEeccCC
Q 045507 498 I----DL-LVNLQILCLHQYMLGD------IAIIGKLK-NLEILSIWGPDIKTLP-E----ELGQL-TKLRQLDLVNC 557 (566)
Q Consensus 498 i----~~-L~~L~~L~L~~~~l~~------p~~i~~L~-~L~~L~l~~~~l~~lP-~----~i~~L-~~L~~L~l~~c 557 (566)
+ .. .++|++|+|++|.+.. +..+..+. +|++|+|++|.+...+ . .+..+ ++|++|++++|
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 2 22 2466666666666553 22334443 6667777666554332 2 23344 46777777663
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.55 E-value=5.1e-08 Score=98.47 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=35.1
Q ss_pred cCcEEEecCCccccCC-h----hhhcc-cccceeeccCcccCC------cccccc-CccCcEEeccCCCCCccc-----h
Q 045507 480 KLKDVDMARMWLFSLP-S----SIDLL-VNLQILCLHQYMLGD------IAIIGK-LKNLEILSIWGPDIKTLP-----E 541 (566)
Q Consensus 480 ~Lr~L~l~~~~~~~lp-~----~i~~L-~~L~~L~L~~~~l~~------p~~i~~-L~~L~~L~l~~~~l~~lP-----~ 541 (566)
+|++|++++|.+...+ . .+..+ ++|++|+|++|.+.. +..+.. .++|++|+|++|.+...+ .
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 5555555555554332 1 22222 355555555555443 222333 235555555555444332 2
Q ss_pred hhcCCCCCCEEeccC
Q 045507 542 ELGQLTKLRQLDLVN 556 (566)
Q Consensus 542 ~i~~L~~L~~L~l~~ 556 (566)
.+..+++|++|++++
T Consensus 248 ~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 248 LKDSLKHLQTVYLDY 262 (362)
T ss_dssp TTTTTTTCSEEEEEH
T ss_pred HHhcCCCccEEEecc
Confidence 234455555555555
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=2.5e-07 Score=92.80 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=81.3
Q ss_pred EEEeecC-CCCCCCCCCCCCccceEEecc-cccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccceeecc
Q 045507 434 AISLLNS-SIPELPEGLECPHLDFLLMVC-KDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLH 510 (566)
Q Consensus 434 ~l~l~~~-~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~ 510 (566)
.+..+.+ .+..+|....+++|+.|.+.+ |. ...++...|..+.+|++|+|++|.+..+| ..|++|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455666 677788744678899999986 54 67788777789999999999999999876 567999999999999
Q ss_pred CcccCC-ccccccCccCcEEeccCCCCC
Q 045507 511 QYMLGD-IAIIGKLKNLEILSIWGPDIK 537 (566)
Q Consensus 511 ~~~l~~-p~~i~~L~~L~~L~l~~~~l~ 537 (566)
+|.|.. |+.+.....|++|+|.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCcc
Confidence 999988 665554445999999988665
No 142
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.45 E-value=1.2e-06 Score=88.90 Aligned_cols=104 Identities=26% Similarity=0.296 Sum_probs=79.2
Q ss_pred CCccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHH
Q 045507 153 ESFESRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~ 215 (566)
..++||+.+++.+..++. ....+.+.|+|++|+||||+|+.+++ ..+|++.....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 578999999999999885 34567899999999999999999986 2355666666788889999
Q ss_pred HHHHcCCCCccc--chHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045507 216 IAEKLGLVSCEK--VETRRANRLYERLKR-EKKILIVLDNIWKH 256 (566)
Q Consensus 216 i~~~l~~~~~~~--~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 256 (566)
++.+++...... +..+....+.+.+.. +++.+||+|+++..
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 999987643322 233445666666643 46899999999764
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.43 E-value=6.1e-08 Score=101.22 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=36.2
Q ss_pred cCcEEEecCCccc-----cCChhhhcccccceeeccCcccCC--ccccc-----cCccCcEEeccCCCCCc-----cchh
Q 045507 480 KLKDVDMARMWLF-----SLPSSIDLLVNLQILCLHQYMLGD--IAIIG-----KLKNLEILSIWGPDIKT-----LPEE 542 (566)
Q Consensus 480 ~Lr~L~l~~~~~~-----~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~-----~L~~L~~L~l~~~~l~~-----lP~~ 542 (566)
+|++|++++|.+. .+|..+..+++|++|++++|.+.. +..+. .+++|++|++++|.+.. +|..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4555555555544 234455555555555555555443 22221 13345555555554332 3344
Q ss_pred hcCCCCCCEEeccC
Q 045507 543 LGQLTKLRQLDLVN 556 (566)
Q Consensus 543 i~~L~~L~~L~l~~ 556 (566)
+..+++|++|++++
T Consensus 166 l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 166 LRAKPDFKELTVSN 179 (461)
T ss_dssp HHHCTTCCEEECCS
T ss_pred HhhCCCCCEEECcC
Confidence 44445555555544
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.40 E-value=6e-07 Score=91.14 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc----------ceEEEEeccCCCHHHHHHHHHH
Q 045507 153 ESFESRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR----------KVDFSEVSQNPNIKIIQGDIAE 218 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~----------~~~wv~v~~~~~~~~i~~~i~~ 218 (566)
..++||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++ ..+|++.....+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999886 34567899999999999999999987 2456665566677788888887
Q ss_pred HcCCCCccc--chHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045507 219 KLGLVSCEK--VETRRANRLYERLKR-EKKILIVLDNIWKH 256 (566)
Q Consensus 219 ~l~~~~~~~--~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 256 (566)
.++...... +..+....+.+.+.. +++.+||+|+++..
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 776543221 233445566666653 35899999998653
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.39 E-value=5.1e-08 Score=101.82 Aligned_cols=129 Identities=17% Similarity=0.088 Sum_probs=92.5
Q ss_pred cccccEEEeecCCCCC-----CCCC-CCCCccceEEeccccccc--ccCCChHHHhcCccCcEEEecCCcccc-----CC
Q 045507 429 LKQCHAISLLNSSIPE-----LPEG-LECPHLDFLLMVCKDTLI--ETNIPEKFFSRIKKLKDVDMARMWLFS-----LP 495 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~-----~~~~-~~~~~Lr~L~l~~~~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp 495 (566)
..+++++.++.|.+.. ++.. ..+++|++|.+.++.-.. ...+...+....++|+.|++++|.+.. +|
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4578888888887754 3322 247889999998764200 001112122233689999999998764 46
Q ss_pred hhhhcccccceeeccCcccCC--cccccc-----CccCcEEeccCCCCC-----ccchhhcCCCCCCEEeccCC
Q 045507 496 SSIDLLVNLQILCLHQYMLGD--IAIIGK-----LKNLEILSIWGPDIK-----TLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 496 ~~i~~L~~L~~L~L~~~~l~~--p~~i~~-----L~~L~~L~l~~~~l~-----~lP~~i~~L~~L~~L~l~~c 557 (566)
..+..+++|++|++++|.+.. +..+.. .++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 777888999999999998776 444443 679999999999887 68888899999999999985
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.39 E-value=1.5e-06 Score=88.27 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=75.0
Q ss_pred CCccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc---------------ceEEEEeccCC-CHHHH
Q 045507 153 ESFESRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR---------------KVDFSEVSQNP-NIKII 212 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~---------------~~~wv~v~~~~-~~~~i 212 (566)
..++||+++++++..++. ....+.+.|+|++|+||||+|+.+++ ..+|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 578999999999987775 34467899999999999999999986 23555555656 78888
Q ss_pred HHHHHHHc-CCCCc--ccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 213 QGDIAEKL-GLVSC--EKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 213 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
...++..+ +.... ..........+.+.+.. ++.+|||||++..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l 145 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTL 145 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHH
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHh
Confidence 88888877 32211 11234456667777765 4459999999764
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=3.4e-06 Score=85.74 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=76.1
Q ss_pred CCccchHHHHHHHHHHHhc----CCce--EEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCCCHHHHHHHHHH
Q 045507 153 ESFESRLSTLKAIQNALSD----LNVS--IIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNPNIKIIQGDIAE 218 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~----~~~~--vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~~~~~i~~~i~~ 218 (566)
..++||+.+++.+..++.. .... .+.|+|.+|+||||+|+.+++ ..+|++.+...+...+...++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 5689999999999988863 3334 899999999999999999987 2345555566778889999998
Q ss_pred HcCCCCcc--cchHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 219 KLGLVSCE--KVETRRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 219 ~l~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
.++..... .........+.+.+. .+++.+||+|+++..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 88754332 123344455555553 246899999999764
No 148
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.31 E-value=1.3e-06 Score=87.63 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=49.5
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccC-----CCHHHHHHHHHH
Q 045507 150 KGYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQN-----PNIKIIQGDIAE 218 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~-----~~~~~i~~~i~~ 218 (566)
.....|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+++ ..+|+++... .+...+...+.+
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHH
Confidence 345679999999999999 755 6999999999999999999988 4577776542 344444444443
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.31 E-value=3.9e-06 Score=78.92 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=39.5
Q ss_pred CCCCccchHHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLN-VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++||+..++.+..++.... .+.+.|+|.+|+||||+|+.+++
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999987543 35889999999999999999988
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=8.8e-07 Score=78.36 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=55.5
Q ss_pred cCcEEEecCCccccC-ChhhhcccccceeeccCcc-cCC--ccccccC----ccCcEEeccCC-CCCc--cchhhcCCCC
Q 045507 480 KLKDVDMARMWLFSL-PSSIDLLVNLQILCLHQYM-LGD--IAIIGKL----KNLEILSIWGP-DIKT--LPEELGQLTK 548 (566)
Q Consensus 480 ~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~-l~~--p~~i~~L----~~L~~L~l~~~-~l~~--lP~~i~~L~~ 548 (566)
.|+.||+++|.++.. -..+..+++|+.|+|++|. +++ ...+..+ ++|++|+|++| ++.. + ..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 477777777765542 2445677788888888886 666 5666664 36888888887 4543 3 34667788
Q ss_pred CCEEeccCCCCCc
Q 045507 549 LRQLDLVNCFQLK 561 (566)
Q Consensus 549 L~~L~l~~c~~l~ 561 (566)
|++|++++|+.+.
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888887765
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.15 E-value=9.2e-06 Score=79.30 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=70.0
Q ss_pred ccchHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc--------------ceEEEEeccCCCHHHHHHHH
Q 045507 155 FESRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR--------------KVDFSEVSQNPNIKIIQGDI 216 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~--------------~~~wv~v~~~~~~~~i~~~i 216 (566)
+.||++++++|...|. ......+.|+|.+|.|||++++.|++ ..+.++...-.+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6789999999887775 45678899999999999999999988 12334444556788899999
Q ss_pred HHHcCCCCccc-chHHHHHHHHHHH--hcCCeEEEEEeCCCCc
Q 045507 217 AEKLGLVSCEK-VETRRANRLYERL--KREKKILIVLDNIWKH 256 (566)
Q Consensus 217 ~~~l~~~~~~~-~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~ 256 (566)
++++....... ...+....+.+.+ ..+++++++||+++..
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 99985432111 1223334444433 2346899999999765
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.15 E-value=1e-05 Score=74.91 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=40.1
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++||+..++.+.+++.....+.+.|+|.+|+|||++|+.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999876665699999999999999999987
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=3.9e-07 Score=92.10 Aligned_cols=128 Identities=14% Similarity=0.054 Sum_probs=89.7
Q ss_pred ccccEEEeecCCCCCC--CCC-CCCCccceEEecccccccccCCChHHH-----hcCccCcEEEecCCcccc-----CCh
Q 045507 430 KQCHAISLLNSSIPEL--PEG-LECPHLDFLLMVCKDTLIETNIPEKFF-----SRIKKLKDVDMARMWLFS-----LPS 496 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~--~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~-----~~l~~Lr~L~l~~~~~~~-----lp~ 496 (566)
.+++.+.++.|.+... ... ..+++|+.|.+.+|.- .......+ ...+.|+.|++++|.+.. ++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l---~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL---GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC---CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC---CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 5788888888877431 111 1356788888887752 11111111 245779999999998764 556
Q ss_pred hhhcccccceeeccCcccCC------ccccccCccCcEEeccCCCCC-----ccchhhcCCCCCCEEeccCCCCCc
Q 045507 497 SIDLLVNLQILCLHQYMLGD------IAIIGKLKNLEILSIWGPDIK-----TLPEELGQLTKLRQLDLVNCFQLK 561 (566)
Q Consensus 497 ~i~~L~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~l~~~~l~-----~lP~~i~~L~~L~~L~l~~c~~l~ 561 (566)
.+..+++|++|+|++|.+.. +..+..+++|++|+|++|.+. .++..+...++|++|+|++| .+.
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~ 252 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELS 252 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCC
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCC
Confidence 66778889999999998765 345667789999999999775 35566777889999999984 443
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=1.3e-05 Score=72.15 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=40.2
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++||+++++++.+.+.....+.+.|+|.+|+|||++|+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999876677889999999999999999887
No 155
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.94 E-value=5.6e-06 Score=89.15 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=68.4
Q ss_pred cccccEEEeecCCCCCCCC-----C-CCCCccceEEecccccccccCCC----hHHHhcCccCcEEEecCCccccCChhh
Q 045507 429 LKQCHAISLLNSSIPELPE-----G-LECPHLDFLLMVCKDTLIETNIP----EKFFSRIKKLKDVDMARMWLFSLPSSI 498 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~~-----~-~~~~~Lr~L~l~~~~~~~~~~~~----~~~~~~l~~Lr~L~l~~~~~~~lp~~i 498 (566)
.++++++.+..|.+.+... . ..+++|++|.+.++.. ..+. ..++..+++|+.|++++|.+..+|..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~---~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF---AKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC---SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC---CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 3567777777775532211 1 2467777777765542 1111 223456777888888777777777777
Q ss_pred hcccccceeeccCcccC----C-ccccccCccCcEEeccCCCCCccchhhcCCCCCCEEeccCC
Q 045507 499 DLLVNLQILCLHQYMLG----D-IAIIGKLKNLEILSIWGPDIKTLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 499 ~~L~~L~~L~L~~~~l~----~-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~c 557 (566)
+.+++|+.|+++++... . +..+..+.+|+.|++.++....+|..+..+++|++|++++|
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 77777777777643211 1 23344444444444444433344444444444444444443
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.91 E-value=1.7e-06 Score=87.47 Aligned_cols=130 Identities=11% Similarity=0.082 Sum_probs=92.1
Q ss_pred cccccEEEeecCCCCCCC-----CC--CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hh---
Q 045507 429 LKQCHAISLLNSSIPELP-----EG--LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SS--- 497 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~~-----~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~--- 497 (566)
...++.+.++.|.+.... .. ...++|+.|.+.++.- ...-...+...+++|+.|++++|.+...+ ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL--DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC--CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC--CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 346788888888875321 11 1236899999988753 11112233445678999999999886532 22
Q ss_pred -h-hcccccceeeccCcccCC------ccccccCccCcEEeccCCCCC-----ccchhhcCCCCCCEEeccCCCCCc
Q 045507 498 -I-DLLVNLQILCLHQYMLGD------IAIIGKLKNLEILSIWGPDIK-----TLPEELGQLTKLRQLDLVNCFQLK 561 (566)
Q Consensus 498 -i-~~L~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~l~~~~l~-----~lP~~i~~L~~L~~L~l~~c~~l~ 561 (566)
+ ....+|++|+|++|.+.. +..+..+++|++|+|++|.+. .++..+...++|++|+|++| .+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 2 235789999999999865 234577899999999999775 35677888999999999995 443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=1.4e-05 Score=76.08 Aligned_cols=80 Identities=28% Similarity=0.291 Sum_probs=65.8
Q ss_pred hcCccCcEEEecCCccccC---ChhhhcccccceeeccCcccCCccccccCc--cCcEEeccCCCCC-ccc-------hh
Q 045507 476 SRIKKLKDVDMARMWLFSL---PSSIDLLVNLQILCLHQYMLGDIAIIGKLK--NLEILSIWGPDIK-TLP-------EE 542 (566)
Q Consensus 476 ~~l~~Lr~L~l~~~~~~~l---p~~i~~L~~L~~L~L~~~~l~~p~~i~~L~--~L~~L~l~~~~l~-~lP-------~~ 542 (566)
..+++|+.|+|++|.+..+ |..++.+++|++|+|++|.+.....+..+. +|++|+|.+|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5688999999999988765 467789999999999999998865566666 9999999999775 354 23
Q ss_pred hcCCCCCCEEecc
Q 045507 543 LGQLTKLRQLDLV 555 (566)
Q Consensus 543 i~~L~~L~~L~l~ 555 (566)
+..+++|+.||=.
T Consensus 247 l~~~P~L~~LDg~ 259 (267)
T 3rw6_A 247 RERFPKLLRLDGH 259 (267)
T ss_dssp HHHCTTCCEESSC
T ss_pred HHHCcccCeECCc
Confidence 7899999999743
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1.4e-05 Score=80.06 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=84.0
Q ss_pred ccccccEEEeecCCCCCCCCCCCCCccceEEecccccccccCCChHHH-hcCccCcEEEecCC--c------cccCChhh
Q 045507 428 ALKQCHAISLLNSSIPELPEGLECPHLDFLLMVCKDTLIETNIPEKFF-SRIKKLKDVDMARM--W------LFSLPSSI 498 (566)
Q Consensus 428 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~--~------~~~lp~~i 498 (566)
.+++++.|.+.++....++. ..+++|++|.+..+.- .......+. ..+++|+.|+|+.+ . +..+...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l--~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGL--PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBC--CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCC--ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 34689999998773223333 3478999999965431 111111111 26889999998632 1 22222222
Q ss_pred --hcccccceeeccCcccCC--cccc---ccCccCcEEeccCCCCCc-----cchhhcCCCCCCEEeccCC
Q 045507 499 --DLLVNLQILCLHQYMLGD--IAII---GKLKNLEILSIWGPDIKT-----LPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 499 --~~L~~L~~L~L~~~~l~~--p~~i---~~L~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~c 557 (566)
+.+++|++|+|.+|.+.. +..+ +.+++|++|+|+.|.+.. ++..+.++++|+.|++++|
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 347899999999998764 3333 357899999999887754 5666778899999999986
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=2e-05 Score=78.10 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=67.8
Q ss_pred CccCcEEEecCCccccCC-hhhhcccccceeeccCcccCC--ccccccCccCc-EEeccCCCCCccc-hhhcCCCCCCEE
Q 045507 478 IKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLE-ILSIWGPDIKTLP-EELGQLTKLRQL 552 (566)
Q Consensus 478 l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~-~L~l~~~~l~~lP-~~i~~L~~L~~L 552 (566)
+.+|+.|++++|.++.+| ..+.++.+|+.|+|.++ +.. +..+.++.+|+ .+++.+ .+..++ ..|..+++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999988888887 45888889999999887 555 45678888898 999887 677775 568888999999
Q ss_pred eccCCCCCccCCC
Q 045507 553 DLVNCFQLKVIAP 565 (566)
Q Consensus 553 ~l~~c~~l~~lP~ 565 (566)
++++ +++..+|.
T Consensus 303 ~l~~-n~i~~I~~ 314 (329)
T 3sb4_A 303 LATG-DKITTLGD 314 (329)
T ss_dssp EECS-SCCCEECT
T ss_pred EeCC-CccCccch
Confidence 8876 66766664
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=7.1e-05 Score=73.73 Aligned_cols=46 Identities=30% Similarity=0.337 Sum_probs=40.2
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|++..++.+.+++..+..+.+.|+|.+|+||||+|+.+++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456889999999999999876665699999999999999999987
No 161
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.74 E-value=6.3e-06 Score=88.78 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=89.8
Q ss_pred cccccEEEeecCCCCCC--CCCC-CCCccceEEecccccccccC-CChHHHhcCccCcEEEecCCcccc-----CChhhh
Q 045507 429 LKQCHAISLLNSSIPEL--PEGL-ECPHLDFLLMVCKDTLIETN-IPEKFFSRIKKLKDVDMARMWLFS-----LPSSID 499 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~~--~~~~-~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~ 499 (566)
..+++++.+++|.+... .... .+++|++|.+.++.. ... -...+...+++|++|++++|.+.. ++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG--FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE--EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC--CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 45788999998876431 1111 478999999987643 111 123345578999999999987654 223334
Q ss_pred cccccceeeccCcc--cCC--c-cccccCccCcEEeccCC-CCCccchhhcCCCCCCEEeccCCC
Q 045507 500 LLVNLQILCLHQYM--LGD--I-AIIGKLKNLEILSIWGP-DIKTLPEELGQLTKLRQLDLVNCF 558 (566)
Q Consensus 500 ~L~~L~~L~L~~~~--l~~--p-~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~c~ 558 (566)
.+++|++|++++|. +.. . .-+.++++|++|++++| .+..+|..++.+++|++|++.+|.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 66799999999986 322 2 22356799999999988 666788889999999999988764
No 162
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.72 E-value=1.1e-05 Score=86.95 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=52.8
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCcccc--CChhhhcccccceeeccCcccCC--ccccccCcc
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFS--LPSSIDLLVNLQILCLHQYMLGD--IAIIGKLKN 525 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~ 525 (566)
.+++|++|.+.... ...++. ++..+++|+.|++++|.+.. ++..+..+++|++|++.++.... +.....+++
T Consensus 268 ~~~~L~~L~l~~~~---~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG---PNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCTTCCEEEETTCC---TTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred ccccccccCccccc---hhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 34556666554432 122222 33556666666666665432 22334566666666666322111 222345666
Q ss_pred CcEEeccC----------C-CCC--ccchhhcCCCCCCEEeccCCCCC
Q 045507 526 LEILSIWG----------P-DIK--TLPEELGQLTKLRQLDLVNCFQL 560 (566)
Q Consensus 526 L~~L~l~~----------~-~l~--~lP~~i~~L~~L~~L~l~~c~~l 560 (566)
|++|++.+ | .+. .++.-+..+++|++|++ +|+.+
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence 77777663 3 332 13333445667777766 33443
No 163
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=4.3e-05 Score=75.70 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=84.8
Q ss_pred CCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccc-eeeccCcccCC--ccccccCccC
Q 045507 451 CPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQ-ILCLHQYMLGD--IAIIGKLKNL 526 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~-~L~L~~~~l~~--p~~i~~L~~L 526 (566)
+++|++|.+.++. ...++...|..+.+|+.|++.++ +..++ ..+.++.+|+ .+.+.+ .++. +..+.++.+|
T Consensus 225 ~~~L~~l~L~~n~---i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTN---ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBC---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCC---cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 6889999998765 57888888999999999999997 77776 5688999999 999998 6665 5788899999
Q ss_pred cEEeccCCCCCccch-hhcCCCCCCEEec
Q 045507 527 EILSIWGPDIKTLPE-ELGQLTKLRQLDL 554 (566)
Q Consensus 527 ~~L~l~~~~l~~lP~-~i~~L~~L~~L~l 554 (566)
+.|++.++.+..++. .|..+++|+.++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999876 5889999998864
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=2.7e-05 Score=70.19 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=75.7
Q ss_pred CCCccceEEeccc-cccc-ccCCChHHHhcCccCcEEEecCCcccc-----CChhhhcccccceeeccCcccCC------
Q 045507 450 ECPHLDFLLMVCK-DTLI-ETNIPEKFFSRIKKLKDVDMARMWLFS-----LPSSIDLLVNLQILCLHQYMLGD------ 516 (566)
Q Consensus 450 ~~~~Lr~L~l~~~-~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~------ 516 (566)
..+.|++|.+.++ .-.. ........+...++|++|++++|.+.. +...+...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3567777777765 3100 001112234567889999999998764 44566667889999999998876
Q ss_pred ccccccCccCcEEec--cCCCCCc-----cchhhcCCCCCCEEeccCC
Q 045507 517 IAIIGKLKNLEILSI--WGPDIKT-----LPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 517 p~~i~~L~~L~~L~l--~~~~l~~-----lP~~i~~L~~L~~L~l~~c 557 (566)
...+...++|++|+| ++|.+.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 245677788999999 7776653 5566777889999999885
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.63 E-value=0.00025 Score=68.53 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=39.4
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 149 HKGYESFESRLSTLKAIQNALSD-------------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
......++|.+..++++.+.+.. ...+-+.|+|.+|+|||++|+.+++
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456788999999998887642 3456799999999999999999998
No 166
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=0.0001 Score=72.62 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=40.6
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|++..++.+..++..+....+.++|.+|+||||+|+.+++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456899999999999998877766799999999999999999987
No 167
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.57 E-value=1.4e-05 Score=86.15 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=79.3
Q ss_pred cccccEEEeecCCCCC-----CCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCC-ccccCChhhhcc
Q 045507 429 LKQCHAISLLNSSIPE-----LPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARM-WLFSLPSSIDLL 501 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~-----~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~L 501 (566)
.++++++.+..|.+.+ ++.. ..+++|++|.+.++...........+...+++|++|++++| .+..+|..+..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 4578888888776533 2211 15678888888765410000111223345688888888887 555567777777
Q ss_pred cccceeeccCccc-------------------------------CC-ccccccCccCcEEeccCCCCCc--cchhhcCCC
Q 045507 502 VNLQILCLHQYML-------------------------------GD-IAIIGKLKNLEILSIWGPDIKT--LPEELGQLT 547 (566)
Q Consensus 502 ~~L~~L~L~~~~l-------------------------------~~-p~~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~ 547 (566)
++|+.|++.++.. .. |..+..+++|++|++++|.+.. ++.-+..++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 7788877554421 01 2223356788888888886542 334466888
Q ss_pred CCCEEeccCC
Q 045507 548 KLRQLDLVNC 557 (566)
Q Consensus 548 ~L~~L~l~~c 557 (566)
+|++|++++|
T Consensus 315 ~L~~L~l~~~ 324 (594)
T 2p1m_B 315 KLQRLWVLDY 324 (594)
T ss_dssp TCCEEEEEGG
T ss_pred CcCEEeCcCc
Confidence 8888888775
No 168
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.52 E-value=0.00049 Score=70.81 Aligned_cols=90 Identities=20% Similarity=0.364 Sum_probs=60.4
Q ss_pred CCCCCccchHHHH---HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCC-CHHHHHHHHHHHcCCC
Q 045507 150 KGYESFESRLSTL---KAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNP-NIKIIQGDIAEKLGLV 223 (566)
Q Consensus 150 ~~~~~~~gr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~-~~~~i~~~i~~~l~~~ 223 (566)
.....++|.+..+ ..+...+..+....+.|+|.+|+||||+|+.+++ ..-++.++... ....+ +.++
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~i-r~~~------ 95 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEI-REAI------ 95 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHH-HHHH------
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHH-HHHH------
Confidence 3456788999888 7777777777778899999999999999999998 44455554332 22222 1111
Q ss_pred CcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 224 SCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 224 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
.........+++.+|++|++...
T Consensus 96 ----------~~a~~~~~~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 96 ----------ERARQNRNAGRRTILFVDEVHRF 118 (447)
T ss_dssp ----------HHHHHHHHTTCCEEEEEETTTCC
T ss_pred ----------HHHHHhhhcCCCcEEEEeChhhh
Confidence 11111122356789999999754
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.49 E-value=0.0005 Score=65.33 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=35.1
Q ss_pred CCCCccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS---D---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.+.+.+. . ...+-+.|+|.+|+|||++|+.+++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34567888888777765542 1 2345688999999999999999998
No 170
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.44 E-value=0.00012 Score=65.35 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=40.1
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++||+.+++.+.+.+.....+.+.|+|.+|+||||+|+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999876677789999999999999999887
No 171
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.41 E-value=0.00099 Score=64.68 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCCCccchHHHHHHHHHHHhc------------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHH
Q 045507 150 KGYESFESRLSTLKAIQNALSD------------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~ 215 (566)
.....++|.+..++.+.+.+.. ...+.+.|+|.+|+||||+|+.+++ ..-++.++...-
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l------- 90 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL------- 90 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT-------
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH-------
Confidence 3456788999999988887631 2356889999999999999999998 333344432110
Q ss_pred HHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 216 IAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 216 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
...... ........+.......++.+|++|++...
T Consensus 91 -----~~~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 91 -----TSKYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp -----SSSSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred -----hhcccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 000000 11122223333333346789999999643
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.40 E-value=0.0002 Score=70.53 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=38.1
Q ss_pred CCCCccchHHHHHHHHHHHh-----cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS-----DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|++..++.+..++. ......+.|+|.+|+|||++|+.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34578999999888887775 23446789999999999999999988
No 173
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=0.0009 Score=65.18 Aligned_cols=93 Identities=15% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCCCCccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHH
Q 045507 150 KGYESFESRLSTLKAIQNALSD-------------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQG 214 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~ 214 (566)
....++.|.+..++.+.+.+.. ...+.+.|+|.+|+|||++|+.+++ ..-++.++ ...+..
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~----~~~l~~ 87 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK----GPELLT 87 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC----HHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE----hHHHHh
Confidence 3455688988888887776541 3456799999999999999999998 33344443 222222
Q ss_pred HHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 215 DIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 215 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.. .+... .....+.+......+.+|++|++..
T Consensus 88 ~~---~g~~~------~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 88 MW---FGESE------ANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HH---HTTCT------THHHHHHHHHHHTCSEEEEECSTTH
T ss_pred hh---cCchH------HHHHHHHHHHHhcCCeEEEEEChHH
Confidence 22 12110 1122333333334679999999964
No 174
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.37 E-value=0.001 Score=65.46 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=58.4
Q ss_pred CCCCCCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc---ceEEEEeccCCCHHHHH
Q 045507 149 HKGYESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR---KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~---~~~wv~v~~~~~~~~i~ 213 (566)
.....++.|.+..++.|.+.+. ....+-+.++|.+|+|||+||+.+++ ..-++.++...-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l----- 82 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL----- 82 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS-----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH-----
Confidence 3445678888888888877653 12336789999999999999999998 334444443210
Q ss_pred HHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 214 GDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 214 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
...... ........+.+.....++.+|++|++...
T Consensus 83 -------~~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 83 -------VSKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp -------CCSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred -------Hhhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 000001 11222333444443346799999999643
No 175
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=0.00022 Score=64.11 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHhcCccCcEEEecCC-cccc-----CChhhhcccccceeeccCcccCC--c----cccccCccCcEEeccCCCCCc--
Q 045507 473 KFFSRIKKLKDVDMARM-WLFS-----LPSSIDLLVNLQILCLHQYMLGD--I----AIIGKLKNLEILSIWGPDIKT-- 538 (566)
Q Consensus 473 ~~~~~l~~Lr~L~l~~~-~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~l~~~~l~~-- 538 (566)
..+...+.|+.|++++| .+.. +...+...++|++|+|++|.+.. . ..+...++|++|+|++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567889999999999 7753 45667778899999999999876 2 345566899999999998764
Q ss_pred ---cchhhcCCCCCCEEec--cCCCCCc
Q 045507 539 ---LPEELGQLTKLRQLDL--VNCFQLK 561 (566)
Q Consensus 539 ---lP~~i~~L~~L~~L~l--~~c~~l~ 561 (566)
+...+...++|++|+| ++ +.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCC
Confidence 6777888999999999 65 4443
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.27 E-value=0.00092 Score=66.83 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=38.0
Q ss_pred CCCCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.+.+.+. ....+.+.|+|.+|+|||++|+.+++
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34568899999988888763 23457799999999999999999998
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.25 E-value=0.0012 Score=59.89 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcC----CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc
Q 045507 159 LSTLKAIQNALSDL----NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK 227 (566)
Q Consensus 159 ~~~~~~l~~~L~~~----~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~ 227 (566)
...++.+.+++... ..+.+.|+|.+|+||||||+.+++ .+.++++. .+...+.......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---- 104 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP------ELFRELKHSLQDQ---- 104 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH------HHHHHHHHC---C----
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH------HHHHHHHHHhccc----
Confidence 34555666666532 127889999999999999999988 34555432 3444443322111
Q ss_pred chHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 228 VETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 228 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
. ...+.+.+.. .-+|||||++.
T Consensus 105 ~----~~~~~~~~~~--~~~lilDei~~ 126 (202)
T 2w58_A 105 T----MNEKLDYIKK--VPVLMLDDLGA 126 (202)
T ss_dssp C----CHHHHHHHHH--SSEEEEEEECC
T ss_pred h----HHHHHHHhcC--CCEEEEcCCCC
Confidence 1 1122333433 23899999964
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=0.00027 Score=74.49 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=40.5
Q ss_pred CCCCCCccchHHHHHHHHHHHhc-----------------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 149 HKGYESFESRLSTLKAIQNALSD-----------------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~~-----------------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.....++|++..++++.+++.. +..+.+.|+|.+|+||||+|+.+++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999863 1347899999999999999999998
No 179
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.25 E-value=9.5e-05 Score=70.31 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=55.8
Q ss_pred EEecCCccccCChh----hhcccccceeeccCcccCC----ccccccCccCcEEeccCCCCCccchhhcCCC--CCCEEe
Q 045507 484 VDMARMWLFSLPSS----IDLLVNLQILCLHQYMLGD----IAIIGKLKNLEILSIWGPDIKTLPEELGQLT--KLRQLD 553 (566)
Q Consensus 484 L~l~~~~~~~lp~~----i~~L~~L~~L~L~~~~l~~----p~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~--~L~~L~ 553 (566)
++++.|....++.. ..++++|+.|+|++|.+.. |..+..+++|++|+|++|.+..+ .++..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 44555543333322 2568899999999999887 24566899999999999998887 4466666 999999
Q ss_pred ccCCC
Q 045507 554 LVNCF 558 (566)
Q Consensus 554 l~~c~ 558 (566)
|++++
T Consensus 227 L~~Np 231 (267)
T 3rw6_A 227 LDGNS 231 (267)
T ss_dssp CTTST
T ss_pred ccCCc
Confidence 99954
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.21 E-value=0.0013 Score=64.67 Aligned_cols=95 Identities=23% Similarity=0.282 Sum_probs=59.1
Q ss_pred CCCCCCCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~ 213 (566)
|.....+++|.+..++.|.+.+. ....+-+.++|.+|+|||++|+.+++ ..-++.++. ..+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~----~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS----SDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH----HHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch----HHHh
Confidence 44456678999999999888772 11235689999999999999999998 333444422 1111
Q ss_pred HHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 214 GDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 214 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
. ... .........+.+.....++.+|++|++..
T Consensus 89 ----~----~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 121 (322)
T 3eie_A 89 ----S----KWM-GESEKLVKQLFAMARENKPSIIFIDQVDA 121 (322)
T ss_dssp ----T----TTG-GGHHHHHHHHHHHHHHTSSEEEEEECGGG
T ss_pred ----h----ccc-chHHHHHHHHHHHHHhcCCeEEEechhhh
Confidence 0 000 01122233344444434678999999864
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.21 E-value=0.00043 Score=67.85 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|++..++.+.+++..+....+.++|.+|+||||+|+.+++
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHH
Confidence 456889999999999988876665699999999999999999987
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.15 E-value=0.00084 Score=59.84 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 158 RLSTLKAIQNALSD---LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 158 r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++.+.+++.+ .....+.|+|.+|+||||||+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44555556555542 3357899999999999999999987
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.14 E-value=0.00088 Score=66.93 Aligned_cols=126 Identities=20% Similarity=0.144 Sum_probs=79.8
Q ss_pred cccccEEEeecCCCCC----------CCCC-CCCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccC-Ch
Q 045507 429 LKQCHAISLLNSSIPE----------LPEG-LECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSL-PS 496 (566)
Q Consensus 429 ~~~~r~l~l~~~~~~~----------~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~ 496 (566)
..+++.|.+....... +... ..+|+|+.|.+.++.. ..++. + .+++|+.|++..|.+..- ..
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~l~~-~--~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LSIGK-K--PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CBCCS-C--BCTTCSEEEEECSBCCHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ceecc-c--cCCCCcEEEEecCCCChHHHH
Confidence 4588888886543321 1111 2578999999987642 23443 2 378899999998876431 12
Q ss_pred hhh--cccccceeeccCc--c-cCC--c----ccc--ccCccCcEEeccCCCCCc-cchhh---cCCCCCCEEeccCCCC
Q 045507 497 SID--LLVNLQILCLHQY--M-LGD--I----AII--GKLKNLEILSIWGPDIKT-LPEEL---GQLTKLRQLDLVNCFQ 559 (566)
Q Consensus 497 ~i~--~L~~L~~L~L~~~--~-l~~--p----~~i--~~L~~L~~L~l~~~~l~~-lP~~i---~~L~~L~~L~l~~c~~ 559 (566)
.++ .+++|++|+|+.+ . ... . +.+ +.+++|++|+|++|.+.. .+..+ ..+++|++|+|+. +.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CC
Confidence 333 6899999998642 1 111 1 112 357899999999987642 22223 3688999999987 45
Q ss_pred Cc
Q 045507 560 LK 561 (566)
Q Consensus 560 l~ 561 (566)
+.
T Consensus 291 L~ 292 (362)
T 2ra8_A 291 LT 292 (362)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.12 E-value=0.0019 Score=63.60 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....++|++..++.+.+++..+.. .++.+.|.+|+|||++|+.+.+
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 4456788999999999999886554 5677778899999999999998
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.11 E-value=0.002 Score=65.22 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCCCCCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHH
Q 045507 149 HKGYESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQG 214 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~ 214 (566)
......++|.+..++.+..++. ....+-+.|+|.+|+|||++|+.+++ ..-++.++-..-....
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~-- 188 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY-- 188 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC------
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc--
Confidence 3445678999999999988773 12346899999999999999999998 3334444322111100
Q ss_pred HHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 215 DIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 215 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.+ ........+.+.....+..+|+||++..
T Consensus 189 -----~g------~~~~~~~~~~~~a~~~~~~il~iDEid~ 218 (389)
T 3vfd_A 189 -----VG------EGEKLVRALFAVARELQPSIIFIDQVDS 218 (389)
T ss_dssp --------------CHHHHHHHHHHHHHSSSEEEEEETGGG
T ss_pred -----cc------hHHHHHHHHHHHHHhcCCeEEEEECchh
Confidence 00 0011223333333333568999999864
No 186
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.09 E-value=0.00028 Score=62.27 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=48.8
Q ss_pred cccceeeccCcccCC--ccccccCccCcEEeccCC-CCCcc-chhhcCC----CCCCEEeccCCCCCc
Q 045507 502 VNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGP-DIKTL-PEELGQL----TKLRQLDLVNCFQLK 561 (566)
Q Consensus 502 ~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~-~l~~l-P~~i~~L----~~L~~L~l~~c~~l~ 561 (566)
.+|+.|++++|.++. ...+..+++|++|+|++| .+..- -..+..+ ++|++|+|++|+++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 579999999999887 788899999999999999 56531 1335665 379999999998764
No 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.07 E-value=0.0023 Score=65.94 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCCCCCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc---ceEEEEeccCCCHHHHH
Q 045507 149 HKGYESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR---KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~---~~~wv~v~~~~~~~~i~ 213 (566)
......+.|.+..++.|.+.+. ....+-+.|+|.+|+|||+||+.+++ ...++.++...- .
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l----~ 205 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL----V 205 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-------
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH----H
Confidence 3445678899998888887762 12346799999999999999999998 334555544311 1
Q ss_pred HHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 214 GDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 214 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
... .+.. . .....+.+.....++.+|++|++...
T Consensus 206 ~~~---~g~~--~----~~~~~~f~~a~~~~~~vl~iDEid~l 239 (444)
T 2zan_A 206 SKW---LGES--E----KLVKNLFQLARENKPSIIFIDEIDSL 239 (444)
T ss_dssp ---------C--C----CTHHHHHHHHHHSCSEEEEESCTTTT
T ss_pred hhh---cchH--H----HHHHHHHHHHHHcCCeEEEEechHhh
Confidence 110 1111 1 11223333333346789999999753
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.06 E-value=0.0013 Score=65.08 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSD-----LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|++..++.+..++.. .....+.|+|.+|+|||++|+.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 456789999999998888762 3456789999999999999999988
No 189
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0043 Score=63.05 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=58.0
Q ss_pred CCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKII 212 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i 212 (566)
|.....++.|-++.+++|.+.+. -...+=|.++|++|.|||+||+++++ ..-++.++-.-
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~----- 250 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG----- 250 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG-----
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh-----
Confidence 44455677888888887776653 12356789999999999999999999 33333333210
Q ss_pred HHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 213 QGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 213 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
+...... .....+..+........+++|++|+++.
T Consensus 251 -------l~sk~~G-ese~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 251 -------IVDKYIG-ESARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp -------TCCSSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred -------hccccch-HHHHHHHHHHHHHHhcCCceeeeecccc
Confidence 0000000 1112233344444334789999999964
No 190
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0019 Score=64.70 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=59.7
Q ss_pred cCCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHH
Q 045507 147 KPHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKI 211 (566)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~ 211 (566)
.|.....++.|-++.+++|.+.+. -...+=|.++|++|.|||.||+++++ ..-++.++...
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~---- 217 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE---- 217 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG----
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH----
Confidence 345556778888888888776543 12345688999999999999999999 44444443220
Q ss_pred HHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 212 IQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 212 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
+...... .....+..+....+...+++|++|+++..
T Consensus 218 --------l~sk~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 218 --------LVQKYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp --------GSCSSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred --------hhccccc-hHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence 0000000 11223334444444446899999998643
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.95 E-value=0.0013 Score=65.54 Aligned_cols=93 Identities=24% Similarity=0.284 Sum_probs=55.4
Q ss_pred CCCCCccchHHHHHHHHHHHh------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHH
Q 045507 150 KGYESFESRLSTLKAIQNALS------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~ 215 (566)
.....++|.+..++.|.+.+. ....+-+.|+|.+|+|||++|+.+++ ..-++.++. ..+.
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~----~~l~-- 121 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS----SDLV-- 121 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH----HHHH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH----HHHh--
Confidence 345568898888888887763 01234588999999999999999999 333333321 1111
Q ss_pred HHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 216 IAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 216 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
... .. ........+.......++.+|++|++..
T Consensus 122 --~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 122 --SKW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDA 154 (355)
T ss_dssp --SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGG
T ss_pred --hhh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHh
Confidence 100 00 0112233333333334679999999864
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.93 E-value=0.0019 Score=72.36 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....++||+.++.++++.+......-+.++|.+|+||||+|+.+++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 34467899999999999998866666678999999999999999887
No 193
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.93 E-value=0.0027 Score=60.70 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=32.4
Q ss_pred CccchHHHHHHHHH-------HHh---cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQN-------ALS---DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~-------~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|....+++++. .+. ....+.+.|+|.+|+|||++|+.+++
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 46677666655555 232 34567899999999999999999998
No 194
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0056 Score=62.17 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKII 212 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i 212 (566)
|.....++.|-++.+++|.+.+. -...+=|.++|++|.|||+||+++++ ..-++.++...
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~----- 278 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE----- 278 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG-----
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH-----
Confidence 34455678888888888876542 13457789999999999999999999 44444443220
Q ss_pred HHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045507 213 QGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWKH 256 (566)
Q Consensus 213 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 256 (566)
+...... .....+..+....+...+++|++|+++..
T Consensus 279 -------L~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 279 -------LVQKYVG-EGARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp -------GCCCSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred -------hhcccCC-HHHHHHHHHHHHHHhcCCceEeecccccc
Confidence 0000001 11122333444444446899999998643
No 195
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0048 Score=62.67 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=58.2
Q ss_pred cCCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHH
Q 045507 147 KPHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKI 211 (566)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~ 211 (566)
.|.....++.|-++.+++|.+.+. -...+=|.++|++|.|||.+|+++++ ..-++.++...
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~---- 250 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ---- 250 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG----
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh----
Confidence 345566778898998888877643 12356789999999999999999999 44444443210
Q ss_pred HHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 212 IQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 212 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
+...... ........+....+...+++|++|+++
T Consensus 251 --------l~~~~vG-ese~~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 251 --------LVQMYIG-EGAKLVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp --------GCSSCSS-HHHHHHHHHHHHHHHHCSEEEEEECTH
T ss_pred --------hhhcccc-hHHHHHHHHHHHHHhcCCeEEeecchh
Confidence 0000000 111223333333333358999999985
No 196
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.0045 Score=58.56 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=34.5
Q ss_pred CCCCCccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALS---D---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|.+..++++.+.+. . ...+-+.|+|.+|+||||+|+.+++
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 345568888887776655432 1 1234588999999999999999988
No 197
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0067 Score=61.50 Aligned_cols=96 Identities=23% Similarity=0.249 Sum_probs=58.7
Q ss_pred cCCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHH
Q 045507 147 KPHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKI 211 (566)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~ 211 (566)
.|.....++.|-+..+++|.+.+. -...+=+.++|++|.|||++|+++++ ..-++.++-..
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~---- 241 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE---- 241 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG----
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch----
Confidence 344556678888988888877653 12346689999999999999999999 44444443220
Q ss_pred HHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 212 IQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 212 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
+...... .....+..+....+...+++|++|+++.
T Consensus 242 --------l~~~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 242 --------FVHKYLG-EGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp --------TCCSSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred --------hhccccc-hhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 0000000 1112233344444334689999999853
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.81 E-value=0.0041 Score=68.87 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=40.4
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++||+.+++++.+.|......-+.++|.+|+||||+|+.+++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999866667788999999999999999887
No 199
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.006 Score=61.37 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=59.1
Q ss_pred cCCCCCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHH
Q 045507 147 KPHKGYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKI 211 (566)
Q Consensus 147 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~ 211 (566)
.|.....++.|-++.+++|.+.+. -...+=|.++|++|.|||.||+++++ ..-++.++..
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s----- 250 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS----- 250 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG-----
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH-----
Confidence 344556677788888888776543 12346799999999999999999999 4444444321
Q ss_pred HHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 212 IQGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 212 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.+...... .....+..+....+...+++|++|+++.
T Consensus 251 -------~l~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 251 -------ELIQKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp -------GGCCSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred -------HhhhccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 00000000 1122333444444444689999999864
No 200
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.62 E-value=0.0038 Score=58.06 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=38.7
Q ss_pred CCCccch---HHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEecc
Q 045507 152 YESFESR---LSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQ 205 (566)
Q Consensus 152 ~~~~~gr---~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~ 205 (566)
...++++ ...++.+..+......+.+.|+|.+|+||||+|+.+++ .+.|++.+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3455553 45666777666655678899999999999999999987 345665543
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.013 Score=56.08 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCCCCccchHHHHHHHHHHHh----------c---CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALS----------D---LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~----------~---~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++.|-++.++.|.+.+. + .-.+=+.++|.+|.||||||+.++.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345567787877777766442 0 1112299999999999999999998
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.58 E-value=0.0016 Score=55.72 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=33.6
Q ss_pred CccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|+...++++.+.+. .....-|.|+|..|+|||++|+.+++
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 46788888888888775 23334578999999999999999998
No 203
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.56 E-value=0.003 Score=61.14 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=43.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc----ceEEEEe--ccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR----KVDFSEV--SQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKREKKIL 247 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v--~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 247 (566)
.+++.|+|++|+||||||.++.. .+.|+++ ....+. ...+.......+.+.+.. .+ +
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~-~~-L 185 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ-HR-V 185 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-CS-E
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-CC-E
Confidence 46778999999999999999876 4678887 222110 001223344556666664 35 9
Q ss_pred EEEeCCCCc
Q 045507 248 IVLDNIWKH 256 (566)
Q Consensus 248 lVlDdv~~~ 256 (566)
||+|++...
T Consensus 186 LVIDsI~aL 194 (331)
T 2vhj_A 186 IVIDSLKNV 194 (331)
T ss_dssp EEEECCTTT
T ss_pred EEEeccccc
Confidence 999998653
No 204
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.56 E-value=0.0023 Score=66.44 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++||+.+++.+.+.+......-+.++|.+|+|||++|+.+++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999765566678999999999999999887
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.53 E-value=0.0089 Score=62.09 Aligned_cols=46 Identities=28% Similarity=0.386 Sum_probs=37.3
Q ss_pred CCCCccchHHHHHHHHHHHh-------------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS-------------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+.|.+..++++.+.+. ....+-+.|+|.+|.|||++|+.+++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 34568899999988887764 13446689999999999999999998
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.46 E-value=0.0046 Score=60.28 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=35.3
Q ss_pred CccchHHHHHHHHHHHhcC---------CceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSDL---------NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.+..++.+...+... ....+.++|.+|+||||+|+.+++
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 4678888888888777521 235899999999999999999988
No 207
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.40 E-value=0.0077 Score=61.06 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=55.0
Q ss_pred CChHHHhcCccCcEEEecCCccccCC-hhhhcccccceeeccCcccC-----C--ccccccCccCcEEeccCCCCCccch
Q 045507 470 IPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLHQYMLG-----D--IAIIGKLKNLEILSIWGPDIKTLPE 541 (566)
Q Consensus 470 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~-----~--p~~i~~L~~L~~L~l~~~~l~~lP~ 541 (566)
++...|.. ..|+.+.+.+ ++..++ ..+.++.+|+.+.+.++.+. . +..+..+.+|+.++|.+ .+..++.
T Consensus 240 I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~ 316 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ 316 (401)
T ss_dssp ECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT
T ss_pred cccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh
Confidence 33333433 4455555532 244443 55677778888888777654 2 45567778888888874 4666654
Q ss_pred -hhcCCCCCCEEeccCCCCCccCC
Q 045507 542 -ELGQLTKLRQLDLVNCFQLKVIA 564 (566)
Q Consensus 542 -~i~~L~~L~~L~l~~c~~l~~lP 564 (566)
.|..+++|+.+.|.. ++..++
T Consensus 317 ~aF~~c~~L~~l~lp~--~l~~I~ 338 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPA--NVTQIN 338 (401)
T ss_dssp TTTTTCCSCCEEEECT--TCCEEC
T ss_pred hhhcCCCCccEEEECc--cccEEc
Confidence 467778888888753 355444
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.36 E-value=0.0084 Score=58.85 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcC--CceEEEEEecCCCcHHHHHHHHhc
Q 045507 159 LSTLKAIQNALSDL--NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 159 ~~~~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
......+...+..+ ....+.|+|.+|+||||||+.+++
T Consensus 20 ~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 20 RLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 33444555554443 346789999999999999999988
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.36 E-value=0.015 Score=59.94 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=33.8
Q ss_pred CCCCccchHHHHHHHHHHHh---cC---------CceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS---DL---------NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.|.++.++++.+... .. -.+-+.|+|.+|.||||||+.+++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34567888887766665432 11 124488999999999999999998
No 210
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.33 E-value=0.014 Score=57.66 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=51.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++.|+|.+|+||||||.++.. .++|+.....++.. .++.++..... .+..+....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 357999999999999999998876 46788777666654 44555543221 1223333444444
Q ss_pred HhcCCeEEEEEeCCCCc
Q 045507 240 LKREKKILIVLDNIWKH 256 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~~ 256 (566)
+...+.-++|+|.+...
T Consensus 135 ~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHTSCCSEEEEECTTTC
T ss_pred hhhcCCCeEEehHhhhh
Confidence 44345568999998654
No 211
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.31 E-value=0.01 Score=60.95 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHhc
Q 045507 161 TLKAIQNALSDLN-VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 161 ~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+........ ...+.|+|.+|+||||||+.+++
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444444444333 67899999999999999999988
No 212
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.0021 Score=63.87 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....++|+++.++.+..++..+....+.|+|.+|+||||+|+.+.+
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34556889999999999998866555589999999999999999887
No 213
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.21 E-value=0.007 Score=58.50 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.+.++|.+|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999998
No 214
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.19 E-value=0.0057 Score=61.28 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHHHhcCC-ceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLN-VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|++..++.+...+..+. ...+.|+|..|+||||+|+.+.+
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999887554 35789999999999999999987
No 215
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.19 E-value=0.015 Score=58.93 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=43.2
Q ss_pred cCCChHHHhcCccCcEEEecCCccc-----cC-ChhhhcccccceeeccCcccCC--ccccccCccCcEEeccCCCCCcc
Q 045507 468 TNIPEKFFSRIKKLKDVDMARMWLF-----SL-PSSIDLLVNLQILCLHQYMLGD--IAIIGKLKNLEILSIWGPDIKTL 539 (566)
Q Consensus 468 ~~~~~~~~~~l~~Lr~L~l~~~~~~-----~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l 539 (566)
..++...|..+++|+.+.+.++.+. .+ +..+.++.+|+.+.|.+ .+.. ...+.++.+|+.+.|..+ +..+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 3444455555666666666555433 22 24455555666666653 2333 334455556666655332 4444
Q ss_pred ch-hhcCCCCCCEEeccC
Q 045507 540 PE-ELGQLTKLRQLDLVN 556 (566)
Q Consensus 540 P~-~i~~L~~L~~L~l~~ 556 (566)
+. .|..+ +|+.+++.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp CTTSSSSS-CCCEEEECC
T ss_pred cHHhCCCC-CCCEEEEcC
Confidence 32 34444 566665555
No 216
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.15 E-value=0.0022 Score=54.75 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=32.2
Q ss_pred CccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|++..++++.+.+. .....-|.|+|..|+|||++|+.+++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 56788888888777765 23334577999999999999999998
No 217
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.15 E-value=0.0076 Score=62.27 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCCccchHHHHHHHHHHH---hcC--CceEEEEEecCCCcHHHHHHHHhc--c--eEEEEec
Q 045507 152 YESFESRLSTLKAIQNAL---SDL--NVSIIGVYGMGGIGKTTLVKEVAR--K--VDFSEVS 204 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L---~~~--~~~vv~I~G~gGiGKTtLa~~v~~--~--~~wv~v~ 204 (566)
...++|.++.++.+..++ ..+ ..+-+.++|.+|.|||++|+.+.+ . .-|+.++
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 467889998877655444 332 235788999999999999999998 2 4455444
No 218
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.02 E-value=0.0078 Score=54.57 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHhc---CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALSD---LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|++.++.+.+.+.. ....+++|.|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356677778877763 3467999999999999999998875
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.97 E-value=0.023 Score=56.18 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++.|+|.+|+||||||.++.. .++|++....++.. .++.++..... .+..+....+...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 357999999999999999998875 57898888776653 24555543221 1222223333333
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
....+.-+||+|.+..
T Consensus 135 ~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAA 150 (349)
T ss_dssp HTTTCCSEEEEECGGG
T ss_pred HhcCCCCEEEEcChHh
Confidence 3334566899999853
No 220
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.96 E-value=0.0077 Score=58.59 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.3
Q ss_pred CccchHHHHHHHHHHHh---------------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS---------------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.+..++.+.+.+. ......+.|+|.+|+|||++|+.+++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 36788888777776543 23445799999999999999998877
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.96 E-value=0.022 Score=52.12 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=32.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc----ceEEEEeccCCCHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR----KVDFSEVSQNPNIKIIQ 213 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~----~~~wv~v~~~~~~~~i~ 213 (566)
...++.|+|.+|+||||||..+.. .++|+.....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHH
Confidence 457999999999999999999864 67787776655655544
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.95 E-value=0.03 Score=52.07 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=50.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCc----------ccch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC----------EKVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~----------~~~~ 229 (566)
...++.|+|.+|+|||||++.+.. .++|+.....+....+. .++..++.... ..+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 357999999999999999998754 35677666655554443 34444443210 0111
Q ss_pred H---HHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 230 T---RRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 230 ~---~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
. .....+.+.+...+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 1233455555444678999999853
No 223
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.0042 Score=61.79 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=37.7
Q ss_pred CCCccchHHHHHHHHHHH-hcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNAL-SDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L-~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|++..++.+.+++ ..+....+.|+|..|+||||+|+.+..
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999988 655554599999999999999998776
No 224
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.92 E-value=0.0066 Score=60.07 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=38.8
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.+...+..+....+.++|..|+||||+|+.+.+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445778898899988888877665699999999999999999987
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.89 E-value=0.011 Score=64.64 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=52.2
Q ss_pred CCCccchHHHHHHHHHHHh----c---------CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHHHHHH
Q 045507 152 YESFESRLSTLKAIQNALS----D---------LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKIIQGDI 216 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i~~~i 216 (566)
..++.|-++.+++|.+.+. . ...+-|.++|.+|.|||+||+++++ ...++.++.. . +
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~----~----l 274 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP----E----I 274 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHH----H----H
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhH----H----h
Confidence 3445666666666655432 1 2346789999999999999999999 3333333221 1 1
Q ss_pred HHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 217 AEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
.. .... ........+.+......+.+|++|+++.
T Consensus 275 ~s----k~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 275 MS----KLAG-ESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp HS----SCTT-HHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred hc----ccch-HHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 10 0000 1112233344444334689999999864
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.89 E-value=0.0074 Score=66.72 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++||+.+++++...+......-+.++|.+|+|||++|+.+++
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999866666688999999999999999887
No 227
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.83 E-value=0.0079 Score=60.14 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=35.3
Q ss_pred CCCccchHHHHHH---HHHHHhcCCc--eEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKA---IQNALSDLNV--SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~---l~~~L~~~~~--~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|++..++. +.+.+..... +.+.|+|.+|+|||++|+.+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5578999988766 4444444333 5899999999999999999998
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.82 E-value=0.036 Score=54.24 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=53.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-----------------------ceEEEEeccCCCHHHHHHHHHHHcCCCCc----
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-----------------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC---- 225 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-----------------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~---- 225 (566)
..+++.|+|.+|+||||+|.++.. .++|++....++..++... +..++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 357999999999999999987752 4577777777777766643 455544321
Q ss_pred ------ccchH---HHHHHHHHHHhc-CCeEEEEEeCCC
Q 045507 226 ------EKVET---RRANRLYERLKR-EKKILIVLDNIW 254 (566)
Q Consensus 226 ------~~~~~---~~~~~l~~~l~~-~kr~LlVlDdv~ 254 (566)
..+.. +....+.+.+.. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 01111 234445555554 456799999985
No 229
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.76 E-value=0.0073 Score=59.62 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=35.6
Q ss_pred CCCCccchHHHHHHHHHHHhc-----CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSD-----LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..++.+...+.. .....+.++|.+|+||||||+.+++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 344577888777776665542 2346799999999999999999998
No 230
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.71 E-value=0.0094 Score=54.31 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhc--CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 160 STLKAIQNALSD--LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 160 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.+++|.+.+.. ....+++|+|..|+|||||++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455666666552 4568999999999999999998876
No 231
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.70 E-value=0.039 Score=54.88 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=50.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++.|.|.+|+||||||.++.. .++|++....++.. .+..++.+... .+..+....+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 346899999999999999988765 57899888777654 24455543221 1223333344433
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
...++--+||+|.+..
T Consensus 148 ~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HTTTCCSEEEEECTTT
T ss_pred HhcCCCCEEEEeChHH
Confidence 4434456899999864
No 232
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.66 E-value=0.05 Score=52.41 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=51.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc------chHHHHHHHHHHH
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK------VETRRANRLYERL 240 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~------~~~~~~~~l~~~l 240 (566)
++-|.|.+|+||||||.++.. .++|++....++.. .+++++.+.+.. +..+....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 789999999999999877654 46888877777654 267777654331 2222212333343
Q ss_pred ---hcCCeEEEEEeCCCCc
Q 045507 241 ---KREKKILIVLDNIWKH 256 (566)
Q Consensus 241 ---~~~kr~LlVlDdv~~~ 256 (566)
.+++.-+||+|-|...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4457889999998654
No 233
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.65 E-value=0.049 Score=53.77 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=53.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCc-------------c
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC-------------E 226 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~-------------~ 226 (566)
...++.|+|.+|+||||||.++.. .++|++....++...+.. ++..++.... .
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999987654 467888888777766553 3445543321 0
Q ss_pred cchHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045507 227 KVETRRANRLYERLKR--EKKILIVLDNIWK 255 (566)
Q Consensus 227 ~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~ 255 (566)
....+....+.+.+.. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1111233344555543 4677999999853
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.63 E-value=0.019 Score=63.68 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=35.6
Q ss_pred CCCccchHHHHHHHHHHHhc-------------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSD-------------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+.|.+..++++.+++.. .....|.|+|.+|+||||||+.+..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 35577888888777776641 2346799999999999999999998
No 235
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.63 E-value=0.034 Score=54.46 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=54.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc----------cch
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE----------KVE 229 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~----------~~~ 229 (566)
...++.|+|.+|+||||+|.++.. .++|++....++..++.. ++..++..... .+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 357999999999999999988753 368888888777776653 34555543210 111
Q ss_pred H---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045507 230 T---RRANRLYERLKR-EKKILIVLDNIWK 255 (566)
Q Consensus 230 ~---~~~~~l~~~l~~-~kr~LlVlDdv~~ 255 (566)
. +....+...+.. .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 1 234455555544 4677999999853
No 236
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.62 E-value=0.035 Score=55.01 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=49.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++.|.|.+|+||||||.++.. .++|++....++... +..++...+. .+..+....+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 357899999999999999988775 578888877776442 4455543221 1122222333322
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
...++--+||+|.+..
T Consensus 137 ~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHTCCSEEEEECGGG
T ss_pred HhccCCCEEEEcCHHH
Confidence 2333456899999753
No 237
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.61 E-value=0.01 Score=57.58 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=35.4
Q ss_pred CccchHHHHHHHHHHHhc--------------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSD--------------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|++..++.+...+.. .....+.++|.+|+|||++|+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 578999998888877643 2345688999999999999999988
No 238
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.54 E-value=0.0084 Score=52.95 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=23.9
Q ss_pred eEEEEEecCCCcHHHHHHHHhc--ceEEEEe
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR--KVDFSEV 203 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v 203 (566)
.+|.|.|++|+||||+|+.+.+ ...|+++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~ 34 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEe
Confidence 5789999999999999999998 3345544
No 239
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.49 E-value=0.043 Score=55.22 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=51.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHh-c------------ceEEEEeccCCCHHHHHHHHHHHcCCCCc----------ccc-
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVA-R------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC----------EKV- 228 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~-~------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~----------~~~- 228 (566)
...++.|+|.+|+|||||+..++ + .++|+.....+....+. .+++.++.... ..+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 35799999999999999999765 2 37888777666655543 35555554321 001
Q ss_pred --hHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045507 229 --ETRRANRLYERLKREKKILIVLDNIW 254 (566)
Q Consensus 229 --~~~~~~~l~~~l~~~kr~LlVlDdv~ 254 (566)
..+....+...+...+.-+||+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 11233344444444467899999864
No 240
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.49 E-value=0.046 Score=50.34 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=28.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHH
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGD 215 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~ 215 (566)
..+++|+|.+|+|||||++.+.. .+.|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHH
Confidence 47899999999999999999885 456655433 34444433
No 241
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.32 E-value=0.011 Score=56.16 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|++..+.++.+.+. ......+.|+|..|+|||++|+.+++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 457788888888776664 22335678999999999999999998
No 242
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.31 E-value=0.085 Score=48.43 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=47.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCc-------------c
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC-------------E 226 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~-------------~ 226 (566)
...+++|+|..|+|||||++.+.. ..+|+.-...+.... ...+.+..+.... .
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 357999999999999999999864 266766544444333 2233444332211 0
Q ss_pred cchHHHHHHHHHHHh-----cCCeEEEEEeCCC
Q 045507 227 KVETRRANRLYERLK-----REKKILIVLDNIW 254 (566)
Q Consensus 227 ~~~~~~~~~l~~~l~-----~~kr~LlVlDdv~ 254 (566)
.........+...+. ..+.-+||+|..-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 011112334444444 4467789999863
No 243
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.27 E-value=0.009 Score=52.43 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHhc--ceEEEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR--KVDFSE 202 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~--~~~wv~ 202 (566)
.+|.|.|++|+||||+|+.+ . ...++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 47899999999999999999 6 444443
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.23 E-value=0.012 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|+.|+||||+++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999987
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.21 E-value=0.067 Score=55.46 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCCCCccchHHHHHHHHHHHh---cC---------CceEEEEEecCCCcHHHHHHHHhc
Q 045507 150 KGYESFESRLSTLKAIQNALS---DL---------NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 150 ~~~~~~~gr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++.|.++.+.++.+... .. -.+=+.|+|.+|.||||||+.++.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345568888887766655432 11 112389999999999999999998
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.15 E-value=0.027 Score=53.00 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=31.3
Q ss_pred CCCCccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALS---D---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++|.+..+.++.+... . .-.+-+.|+|.+|+||||||+.++.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34567777766555544322 1 0112289999999999999999998
No 247
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.12 E-value=0.069 Score=48.11 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=24.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--ceEEEE
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--KVDFSE 202 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~ 202 (566)
...+|+|.|+.|+||||+|+.+.. ...+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 457899999999999999999987 444444
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.10 E-value=0.011 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.04 E-value=0.013 Score=53.05 Aligned_cols=24 Identities=46% Similarity=0.434 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 250
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.02 E-value=0.0088 Score=56.86 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=31.9
Q ss_pred CCCccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALS---D---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.+.+.+. . ...+-+.|+|.+|+|||++|+.+++
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 4567777666666555432 1 1223478999999999999999998
No 251
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.95 E-value=0.035 Score=46.25 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCChHHHhcCccCcEEEecCCccccCCh-hhhcccccceeeccCcccC
Q 045507 469 NIPEKFFSRIKKLKDVDMARMWLFSLPS-SIDLLVNLQILCLHQYMLG 515 (566)
Q Consensus 469 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~ 515 (566)
.+|..+ ..+|+.|+|++|.|+.+|. .+..+.+|++|+|.+|.+.
T Consensus 24 ~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 555432 3457788888888888764 4567778888888887654
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.94 E-value=0.029 Score=55.09 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHh----cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALS----DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+-+...+++++.+. .+....+.|+|+.|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34555666666654 44566799999999999999998887
No 253
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.90 E-value=0.012 Score=58.23 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=34.2
Q ss_pred CCCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 151 GYESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 151 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+...++|.+..++.+...+......-+.|+|.+|+|||++|+.+++
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHH
Confidence 3456889888766654444333334489999999999999999988
No 254
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.89 E-value=0.039 Score=54.13 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|++..++.+...+..+ .-+.++|.+|+|||++|+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHH
Confidence 36789999998888877653 3688999999999999999988
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.88 E-value=0.015 Score=51.40 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=23.6
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-ceEEEEec
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-KVDFSEVS 204 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-~~~wv~v~ 204 (566)
.+|.|.|++|+||||+|+.+.. ..-|..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 5789999999999999999987 33344444
No 256
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.87 E-value=0.036 Score=52.96 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCCCccchHHHHHHHHHHHh---c---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 149 HKGYESFESRLSTLKAIQNALS---D---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 149 ~~~~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....+++|.+..++++.+... . .-.+-+.|+|..|+||||||+.++.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 3345567787776665554332 1 0012289999999999999999998
No 257
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.86 E-value=0.018 Score=52.07 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....+|.|+|+.|+||||+|+.+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999887
No 258
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.066 Score=51.81 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 158 RLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++.++.+.+.+..+......++|..|.||||+|+.+.+
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345567777777766678899999999999999999876
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.81 E-value=0.012 Score=51.62 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHhc--ceEEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR--KVDFS 201 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~--~~~wv 201 (566)
.+|+|+|+.|+||||+++.+.. ...++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5799999999999999999988 44444
No 260
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.76 E-value=0.033 Score=51.20 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 162 LKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 162 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.+...+......+|.|+|.+|+|||||+..+..
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34444444456678999999999999999988876
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.75 E-value=0.017 Score=52.21 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--ceEEEE
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSE 202 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~ 202 (566)
....+++|+|+.|+||||+++.+.. ...++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4567999999999999999999987 444444
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.73 E-value=0.016 Score=51.43 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++++|+|..|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 263
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.72 E-value=0.029 Score=53.96 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=26.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhcce--EEEEecc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVARKV--DFSEVSQ 205 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~~~--~wv~v~~ 205 (566)
...+|.|.|++|+||||+|+.+.... .|+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 45789999999999999999998722 4555653
No 264
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.71 E-value=0.022 Score=55.26 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=35.0
Q ss_pred CccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 47788888888887765 23345678999999999999999988
No 265
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.67 E-value=0.026 Score=51.72 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.++..+.+...+......+++|+|.+|+|||||+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3344555555555556788999999999999999988876
No 266
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.66 E-value=0.017 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 267
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.62 E-value=0.066 Score=56.44 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=33.0
Q ss_pred CccchHHHHHHHHHHHh------cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALS------DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|-++..+.+.+.+. .....++.++|.+|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35677777766655443 23457899999999999999999998
No 268
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.60 E-value=0.018 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.59 E-value=0.019 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 357899999999999999998776
No 270
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.57 E-value=0.022 Score=50.02 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=24.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc--ceEEEE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR--KVDFSE 202 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~ 202 (566)
..+++|+|+.|+||||+++.+.. ...++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 57899999999999999999987 444444
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.52 E-value=0.022 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++|+|..|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999887
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.51 E-value=0.023 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 273
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.51 E-value=0.021 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 274
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.47 E-value=0.016 Score=52.46 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc--ceEEEE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR--KVDFSE 202 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~ 202 (566)
..+|.|.|+.|+||||+|+.+.. ...++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 46899999999999999999987 444444
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.47 E-value=0.037 Score=57.46 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=35.3
Q ss_pred CccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|++..++.+...+..+ .-|.++|.+|+|||+||+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHH
Confidence 5789999998888776653 4688999999999999999998
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.45 E-value=0.024 Score=51.56 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=25.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--c--eEEEEe
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--K--VDFSEV 203 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--~--~~wv~v 203 (566)
...+++|+|..|+|||||++.+.. . +.++.-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 457899999999999999999987 3 555543
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.42 E-value=0.043 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.41 E-value=0.022 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999987
No 279
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.39 E-value=0.027 Score=51.08 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.35 E-value=0.022 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.34 E-value=0.027 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 282
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.30 E-value=0.023 Score=51.34 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=22.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhc-ceEEEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR-KVDFSE 202 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~-~~~wv~ 202 (566)
.+|+|+|+.|+||||+++.+.. ...++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~g~~~i~ 30 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRELGAYVLD 30 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHCCCEEEE
Confidence 4799999999999999999987 333443
No 283
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.29 E-value=0.025 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 284
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.29 E-value=0.064 Score=44.62 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=42.8
Q ss_pred cEEEecCCccc--cCChhhhcccccceeeccCcccCC-c-cccccCccCcEEeccCCCC
Q 045507 482 KDVDMARMWLF--SLPSSIDLLVNLQILCLHQYMLGD-I-AIIGKLKNLEILSIWGPDI 536 (566)
Q Consensus 482 r~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~l~~~~l 536 (566)
..++-++..++ .+|..+ ..+|++|+|++|.|+. | ..+..+.+|++|+|.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 888764 3579999999999888 4 4567889999999998754
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.28 E-value=0.026 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 286
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.27 E-value=0.021 Score=50.53 Aligned_cols=23 Identities=48% Similarity=0.570 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.|.|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 287
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.26 E-value=0.023 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999988
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.25 E-value=0.026 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999987
No 289
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.24 E-value=0.17 Score=50.06 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=50.7
Q ss_pred HHHHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc---------ceEEEEeccCCC-HHHHHHHHHHHcC-CCCcccch-
Q 045507 163 KAIQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR---------KVDFSEVSQNPN-IKIIQGDIAEKLG-LVSCEKVE- 229 (566)
Q Consensus 163 ~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~---------~~~wv~v~~~~~-~~~i~~~i~~~l~-~~~~~~~~- 229 (566)
-+.++.+. -.....++|+|..|+|||||++.+.+ .++++-+.+... +.++.+.+-..+- ...++...
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHH
Confidence 34455544 24467899999999999999998876 245566665542 2222222200000 00011000
Q ss_pred ----HHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045507 230 ----TRRANRLYERLK-REKKILIVLDNIWKH 256 (566)
Q Consensus 230 ----~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 256 (566)
....-.+-+++. .|+.+||++||+...
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 011122333443 479999999998543
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.24 E-value=0.039 Score=55.00 Aligned_cols=42 Identities=31% Similarity=0.296 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHHh-------------c--CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 155 FESRLSTLKAIQNALS-------------D--LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~-------------~--~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++|.+..++.+...+. . ...+.+.++|.+|+|||++|+.+++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 5788888888877762 0 1345789999999999999999998
No 291
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.21 E-value=0.025 Score=50.01 Aligned_cols=21 Identities=48% Similarity=0.659 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|+|..|+|||||++.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998887
No 292
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.20 E-value=0.02 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 293
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.20 E-value=0.12 Score=47.25 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=26.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhcceEEEEec
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVARKVDFSEVS 204 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~~~~wv~v~ 204 (566)
..++|.|.|++|+||||.|+.+....-+.++|
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 56899999999999999999999844444443
No 294
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.19 E-value=0.17 Score=46.85 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEecc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQ 205 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~ 205 (566)
...++.|.|.+|+||||||.++.. .++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 346899999999999999887754 567766544
No 295
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.17 E-value=0.028 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhcc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVARK 197 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~~ 197 (566)
....|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999873
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.16 E-value=0.029 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 297
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.16 E-value=0.026 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+.|+|..|+|||||++.+++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999988
No 298
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.14 E-value=0.074 Score=58.72 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=35.1
Q ss_pred CCccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSD---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+...+.. .....+.++|.+|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 3577888888888776651 1234789999999999999999988
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.09 E-value=0.023 Score=51.45 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 300
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.06 E-value=0.022 Score=50.07 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc--ceEEE
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR--KVDFS 201 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~--~~~wv 201 (566)
+.|.|.|++|+||||+|+.+.. ...|+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 3689999999999999999988 44444
No 301
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.04 E-value=0.03 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 302
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.04 E-value=0.21 Score=50.98 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=47.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCC-CHHHHHHHHHHHcCC--------CCccc-chH----H
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNP-NIKIIQGDIAEKLGL--------VSCEK-VET----R 231 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~-~~~~i~~~i~~~l~~--------~~~~~-~~~----~ 231 (566)
.+.++|+|..|+|||||++.+.. .+.++.+.+.. ...++..++...-.. ..++. ... -
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 34689999999999999997765 23455555543 344555545332000 00110 000 0
Q ss_pred HHHHHHHHHh--cCCeEEEEEeCCC
Q 045507 232 RANRLYERLK--REKKILIVLDNIW 254 (566)
Q Consensus 232 ~~~~l~~~l~--~~kr~LlVlDdv~ 254 (566)
....+-+++. .+++.|+++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1224455554 3799999999984
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.01 E-value=0.42 Score=48.45 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.01 E-value=0.028 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999987
No 305
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.00 E-value=0.16 Score=49.93 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhcCCc-eEEEEEecCCCcHHHHHHHHhc
Q 045507 158 RLSTLKAIQNALSDLNV-SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 158 r~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++..+.+.+.+..+.. ..+.++|..|+||||+|+.+.+
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHH
Confidence 35567777777776654 5699999999999999999887
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.98 E-value=0.028 Score=51.76 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.95 E-value=0.032 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.95 E-value=0.032 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|+|.|..|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999877
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.94 E-value=0.031 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999987
No 310
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.93 E-value=0.023 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.92 E-value=0.032 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 312
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.92 E-value=0.054 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+.++|.+|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999998
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.91 E-value=0.023 Score=50.61 Aligned_cols=30 Identities=33% Similarity=0.284 Sum_probs=23.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhc---ceEEEEec
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR---KVDFSEVS 204 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~---~~~wv~v~ 204 (566)
|.|.|+|++|+|||||++.+.. ..+...++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs 34 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVS 34 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEE
Confidence 5588999999999999999976 24555554
No 314
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.88 E-value=0.032 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.86 E-value=0.026 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++++|+|..|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998875
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.85 E-value=0.033 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|.+.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.84 E-value=0.036 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999998877
No 318
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.80 E-value=0.026 Score=49.35 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.77 E-value=0.036 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 320
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.75 E-value=0.042 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|.|||||++.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998775
No 321
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.74 E-value=0.036 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+||||+++.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 322
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.74 E-value=0.062 Score=58.87 Aligned_cols=95 Identities=15% Similarity=0.283 Sum_probs=59.0
Q ss_pred CCCCCCCccchHHHHHHHHHHHh----------c---CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEeccCCCHHHH
Q 045507 148 PHKGYESFESRLSTLKAIQNALS----------D---LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEVSQNPNIKII 212 (566)
Q Consensus 148 ~~~~~~~~~gr~~~~~~l~~~L~----------~---~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v~~~~~~~~i 212 (566)
|......+.|.++.++.|.+.+. . ...+-+.++|++|.|||.+|+++++ ..-++.++.+ .
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~----~- 546 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP----E- 546 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH----H-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc----h-
Confidence 33445567788888777776543 0 1234578999999999999999999 4445554321 1
Q ss_pred HHHHHHHcCCCCcccchHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045507 213 QGDIAEKLGLVSCEKVETRRANRLYERLKREKKILIVLDNIWK 255 (566)
Q Consensus 213 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 255 (566)
++... ...+ ...+..+.+..+...+++|++|+++.
T Consensus 547 ---l~s~~----vGes-e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 547 ---LLTMW----FGES-EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ---HHTTT----CSSC-HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ---hhccc----cchH-HHHHHHHHHHHHHcCCceeechhhhH
Confidence 11111 1111 23455555555555789999999863
No 323
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.73 E-value=0.037 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999998876
No 324
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.72 E-value=0.037 Score=53.82 Aligned_cols=25 Identities=36% Similarity=0.698 Sum_probs=21.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++.+||+|.|=||+||||.|-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4679999999999999999887655
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.70 E-value=0.061 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|.|..|+||||+++.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999998865
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.67 E-value=0.039 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 327
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.66 E-value=0.036 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 328
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.65 E-value=0.09 Score=49.03 Aligned_cols=32 Identities=16% Similarity=-0.013 Sum_probs=25.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc--ceEEEEe
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEV 203 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v 203 (566)
....+|.|.|+.|+||||+|+.+.+ ....+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567899999999999999999987 4444443
No 329
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.62 E-value=0.043 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|+|.|..|+|||||++.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998876
No 330
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.61 E-value=0.12 Score=61.97 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=53.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+.+.|+|.+|+|||+||.++.. .+.|+.+...++... ++.++.+... ....+....+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 468999999999999999998866 567888887777666 4455533211 1222344455555
Q ss_pred HhcCCeEEEEEeCCC
Q 045507 240 LKREKKILIVLDNIW 254 (566)
Q Consensus 240 l~~~kr~LlVlDdv~ 254 (566)
.++.+.-+||+|.+.
T Consensus 1501 vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHTCCSEEEESCGG
T ss_pred HhcCCCCEEEEcChh
Confidence 555577899999984
No 331
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.60 E-value=0.037 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.53 E-value=0.039 Score=49.45 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+-.+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999987
No 333
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.53 E-value=0.18 Score=49.81 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=49.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------------ceEEEEeccCCCHHHHHHHHHHHcCCCCc-------------c
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------------KVDFSEVSQNPNIKIIQGDIAEKLGLVSC-------------E 226 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~-------------~ 226 (566)
..+++.|+|..|+|||||+..+.. .++|++....+....+ ..+++..+.... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 458999999999999999998864 1377776655544443 234443332210 0
Q ss_pred cchHHHHHHHHHHHhc-----CCeEEEEEeCCCC
Q 045507 227 KVETRRANRLYERLKR-----EKKILIVLDNIWK 255 (566)
Q Consensus 227 ~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~ 255 (566)
....+....+...+.. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 0112233344444432 3678999999853
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.52 E-value=0.044 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.48 E-value=0.043 Score=51.55 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|+|+.|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999996
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.47 E-value=0.027 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 337
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.45 E-value=0.057 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.|+|++|+||||+|+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 338
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.43 E-value=0.037 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998876
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.43 E-value=0.043 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999988
No 340
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.43 E-value=0.045 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.38 E-value=0.046 Score=49.08 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++++|+|..|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 467899999999999999999886
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.37 E-value=0.049 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 343
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.36 E-value=0.046 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998876
No 344
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.31 E-value=0.076 Score=53.97 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=33.7
Q ss_pred CccchHHHHHHHHHHHhc--------------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSD--------------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.++.++.+...+.. ...+-+.++|++|+||||+|+.++.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 577888888877665521 1245689999999999999999988
No 345
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.28 E-value=0.76 Score=57.05 Aligned_cols=201 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhc-----ceEEEEeccCCCHHHHHHHHHHHcCCCC----------cccchHHHHHHHHHHHh
Q 045507 177 IGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNPNIKIIQGDIAEKLGLVS----------CEKVETRRANRLYERLK 241 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~~~~~i~~~i~~~l~~~~----------~~~~~~~~~~~l~~~l~ 241 (566)
+.++|.+|.|||++|+.+.. ....++++.......++..+...+.... ..
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~--------------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD--------------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS---------------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC---------------
Q ss_pred cCCeEEEEEeC--CCCccc--------------------------------ccccccccCCCCCCC--------------
Q 045507 242 REKKILIVLDN--IWKHVD--------------------------------LESIGIPFGDEHKGY-------------- 273 (566)
Q Consensus 242 ~~kr~LlVlDd--v~~~~~--------------------------------~~~~~~~~~~~~~g~-------------- 273 (566)
+|+.++.+|| +-..+. ..-++..-|....|.
T Consensus 1335 -gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1335 -IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp -SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred -CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Q ss_pred --ccccCccchHHHHHHHHHhCCCchHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCccchhhhhhhhhhHHhhhccCCC
Q 045507 274 --DDVENLKLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALRELRIRTPSVVNFEKVRAGCVRATEETFSALYS 351 (566)
Q Consensus 274 --~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~~l~lsy~~l~~ 351 (566)
.......+..+-..+++..-..+-.+..++..+-..+.+-|..+...+... ...|..-...++.+++.=-+.+..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~--~k~HY~FnlRDLsrv~qGll~~~~- 1490 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTG--LQSHYLFSPRELTRLVRGVYTAIN- 1490 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTT--TCTTCCCCHHHHHHHHHHHHHHHH-
T ss_pred EeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cCCCcccCHHHHHHHHHHHHhcCc-
Q ss_pred CCCcchhhHHHHHHhhhcc--ccccccHHHHHHHHHHHHHHHhhhch
Q 045507 352 SGIFYFNFILFKCCMGLGI--LQRANKMEDAYNKLHALLHELKDSCL 396 (566)
Q Consensus 352 p~~~~~~~~L~~~wia~g~--~~~~~~~~~~~~~~~~li~~L~~~~l 396 (566)
|..+.-...++++|+.|.. +.+.-..++-...+.+++.+.+...|
T Consensus 1491 ~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1491 TGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537 (2695)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHS
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
No 346
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.28 E-value=0.052 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 347
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.25 E-value=0.027 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|+|.|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 348
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.22 E-value=0.048 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 349
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.13 E-value=0.061 Score=60.17 Aligned_cols=43 Identities=23% Similarity=0.354 Sum_probs=34.8
Q ss_pred CccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSD---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.+..++.+...+.. .....+.|+|..|+|||++|+.+++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 468899888888777652 1235789999999999999999987
No 350
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.12 E-value=0.053 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999877
No 351
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.05 E-value=0.35 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998876
No 352
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.04 E-value=0.062 Score=51.40 Aligned_cols=24 Identities=21% Similarity=0.630 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 353
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.04 E-value=0.058 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|.|.|+.|+||||+|+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999877
No 354
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.04 E-value=0.47 Score=48.31 Aligned_cols=91 Identities=20% Similarity=0.317 Sum_probs=56.2
Q ss_pred HHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCC-CHHHHHHHHHHHcCCC------Ccc--
Q 045507 165 IQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNP-NIKIIQGDIAEKLGLV------SCE-- 226 (566)
Q Consensus 165 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~-~~~~i~~~i~~~l~~~------~~~-- 226 (566)
.++.|. =.....++|+|..|+|||+|+..+.+ .++++-+.+.. ...++.+++...-... ...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV 222 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALV 222 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEE
Confidence 444444 23557899999999999999987755 34555566554 4566777776542221 110
Q ss_pred -----cc------hHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045507 227 -----KV------ETRRANRLYERLKR--EKKILIVLDNIWK 255 (566)
Q Consensus 227 -----~~------~~~~~~~l~~~l~~--~kr~LlVlDdv~~ 255 (566)
.. .......+-++++. |+.+||++||+..
T Consensus 223 ~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 223 YGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11 01123345566653 7999999999853
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.99 E-value=0.059 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.98 E-value=0.035 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998866
No 357
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.98 E-value=0.052 Score=48.52 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|+|.|..|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 358
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.95 E-value=0.39 Score=48.66 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999988875
No 359
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.90 E-value=0.062 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987764
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.88 E-value=0.053 Score=49.74 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 361
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.86 E-value=0.055 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHh
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVA 195 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~ 195 (566)
...+++|+|..|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45799999999999999999877
No 362
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.86 E-value=0.066 Score=48.91 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc-ceEEEE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR-KVDFSE 202 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~-~~~wv~ 202 (566)
..+|+|.|+.|+||||+++.+.. ...++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFADLGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCEEEE
Confidence 36899999999999999999987 444443
No 363
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.86 E-value=0.06 Score=50.13 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.. .+++|+|..|+|||||.+.+.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 8999999999999999998876
No 364
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.85 E-value=0.067 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998876
No 365
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.83 E-value=0.057 Score=49.71 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999886
No 366
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.81 E-value=0.046 Score=51.20 Aligned_cols=23 Identities=43% Similarity=0.416 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 367
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.79 E-value=0.049 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+++|+|..|+|||||++.+..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 3689999999999999998775
No 368
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.76 E-value=0.33 Score=49.62 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=56.4
Q ss_pred HHHHh-cCCceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCC-CHHHHHHHHHHHcCCC-------Ccc--
Q 045507 166 QNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNP-NIKIIQGDIAEKLGLV-------SCE-- 226 (566)
Q Consensus 166 ~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~-~~~~i~~~i~~~l~~~-------~~~-- 226 (566)
++.|. =.....++|+|..|+|||+|+..+.+ .++++-+.+.. ...++.+++...-... ...
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV 235 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALV 235 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEE
Confidence 34444 23457789999999999999977655 45667777665 4566777776532211 100
Q ss_pred -----cc------hHHHHHHHHHHHhc--CCeEEEEEeCCC
Q 045507 227 -----KV------ETRRANRLYERLKR--EKKILIVLDNIW 254 (566)
Q Consensus 227 -----~~------~~~~~~~l~~~l~~--~kr~LlVlDdv~ 254 (566)
.. .......+-++++. |+.+|+++||+.
T Consensus 236 ~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 236 YGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00 11224456677765 799999999984
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.76 E-value=0.066 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 370
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.72 E-value=0.064 Score=49.77 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999876
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.63 E-value=0.062 Score=48.99 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 372
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.62 E-value=0.41 Score=47.34 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHhc-CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 162 LKAIQNALSD-LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 162 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
--+.++.+.. ...+.++|+|..|+|||+|++.+.+
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 3456666653 4467889999999999999988876
No 373
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.60 E-value=0.3 Score=45.26 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=28.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHh-c-------ceEEEEeccCCCHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVA-R-------KVDFSEVSQNPNIKIIQGDI 216 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~-~-------~~~wv~v~~~~~~~~i~~~i 216 (566)
...++.|.|.+|+||||+|.++. + .+++++.. .+..++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS--SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc--CCHHHHHHHH
Confidence 34789999999999999998754 3 34555443 3455555443
No 374
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.56 E-value=0.046 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=17.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHh-c
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVA-R 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~-~ 196 (566)
...+++|+|..|+|||||++.+. .
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999999998 5
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.55 E-value=0.95 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998874
No 376
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.54 E-value=0.07 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999977
No 377
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.54 E-value=0.14 Score=50.78 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=27.0
Q ss_pred HHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 162 LKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 162 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++++.+. .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 444454454 45678999999999999999998864
No 378
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.52 E-value=0.11 Score=50.27 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhcC---CceEEEEEecCCCcHHHHHHHHhc
Q 045507 158 RLSTLKAIQNALSDL---NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 158 r~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+...++.+.+++... ....+.|+|..|+|||+||+.+++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 444555555666532 247889999999999999999887
No 379
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.43 E-value=0.072 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999987
No 380
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.43 E-value=0.068 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+|+|.|..|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.43 E-value=0.068 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.39 E-value=0.075 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999988775
No 383
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.38 E-value=0.43 Score=45.82 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998876
No 384
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.34 E-value=0.43 Score=42.75 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|+|=|.-|+||||.++.+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477889999999999999987
No 385
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.34 E-value=0.068 Score=48.45 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcceEEEEec
Q 045507 176 IIGVYGMGGIGKTTLVKEVARKVDFSEVS 204 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~~~~wv~v~ 204 (566)
+|.|.|++|+||+|.|+.+....-+.++|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 57899999999999999999843344444
No 386
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.31 E-value=0.84 Score=44.19 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=31.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAE 218 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~ 218 (566)
...++.|.|.+|+||||+|.++.. .++|++.. -+..++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC--CCHHHHHHHHHH
Confidence 457899999999999999998864 45665544 445555555543
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.30 E-value=0.07 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999987
No 388
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.30 E-value=0.077 Score=50.11 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+|||||.+.+.-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 3457899999999999999999887
No 389
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.23 E-value=0.058 Score=48.98 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHh
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVA 195 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~ 195 (566)
..+++|+|..|+|||||++.+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999765
No 390
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.22 E-value=0.071 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999876
No 391
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.21 E-value=0.11 Score=55.62 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=36.1
Q ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 152 YESFESRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 152 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++.
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHH
T ss_pred cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhc
Confidence 456789888888877766654 5889999999999999999988
No 392
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.17 E-value=0.086 Score=49.16 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998876
No 393
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.14 E-value=0.074 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.++-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999987
No 394
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.12 E-value=0.089 Score=50.88 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 457999999999999999998876
No 395
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.10 E-value=0.084 Score=49.63 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.++-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999987
No 396
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.06 E-value=0.15 Score=51.79 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhcceEEEEec
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVARKVDFSEVS 204 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~wv~v~ 204 (566)
....+|.|+|++|+||||+|+.+....-|+.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 456899999999999999999998843344444
No 397
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.05 E-value=0.09 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+|||||.+.++-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999998876
No 398
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.04 E-value=0.078 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999876
No 399
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.03 E-value=0.077 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999887
No 400
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.03 E-value=0.17 Score=52.00 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|.+|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999998876
No 401
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.02 E-value=0.082 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998875
No 402
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.02 E-value=0.066 Score=48.85 Aligned_cols=24 Identities=38% Similarity=0.636 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999876
No 403
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.01 E-value=0.078 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||++.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999986
No 404
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.00 E-value=0.096 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998876
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.99 E-value=0.092 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 357999999999999999998876
No 406
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.92 E-value=0.14 Score=49.72 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.3
Q ss_pred eEEEEEecCCCcHHHHHHHHhc--ceEEEEe
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR--KVDFSEV 203 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v 203 (566)
++|.|+|+.|+||||||+.+.. ...++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 5899999999999999999998 4445554
No 407
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.91 E-value=0.091 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999876
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.90 E-value=0.09 Score=47.87 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 409
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.88 E-value=0.12 Score=46.29 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHhc-CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 162 LKAIQNALSD-LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 162 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+..+..++.. +....+.|+|.+|.||||+|..+++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4555555543 2234799999999999999988887
No 410
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.87 E-value=0.083 Score=49.40 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999977
No 411
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.86 E-value=0.088 Score=51.42 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=23.8
Q ss_pred eEEEEEecCCCcHHHHHHHHhc--ceEEEEe
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR--KVDFSEV 203 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v 203 (566)
.+|+|.|..|+||||||+.+.. ...+++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 5899999999999999999988 4444443
No 412
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.86 E-value=0.093 Score=49.84 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+|||||.+.+..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999987
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.82 E-value=0.089 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 414
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.80 E-value=0.18 Score=45.08 Aligned_cols=105 Identities=9% Similarity=0.018 Sum_probs=70.2
Q ss_pred CCccceEEeccccccccc----CCChHHHhcCccCcEEEecCCcccc-----CChhhhcccccceeeccCcccCC--c--
Q 045507 451 CPHLDFLLMVCKDTLIET----NIPEKFFSRIKKLKDVDMARMWLFS-----LPSSIDLLVNLQILCLHQYMLGD--I-- 517 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~~~----~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--p-- 517 (566)
-+.|++|.+.++.. .. ......+..-..|+.|+|++|.+.. +-..+..-+.|+.|+|++|.|.. -
T Consensus 40 n~~L~~L~L~~nn~--igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKR--VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp CSSCCEEECTTCCS--SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCccEEECCCCCC--CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45788899876421 11 0111223566789999999998763 44556666789999999999876 2
Q ss_pred --cccccCccCcEEeccCCC---CC-----ccchhhcCCCCCCEEeccCC
Q 045507 518 --AIIGKLKNLEILSIWGPD---IK-----TLPEELGQLTKLRQLDLVNC 557 (566)
Q Consensus 518 --~~i~~L~~L~~L~l~~~~---l~-----~lP~~i~~L~~L~~L~l~~c 557 (566)
+.+..-..|++|+|.++. +. .+-..+..=+.|+.|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 344555679999998652 22 24444566678999998763
No 415
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.78 E-value=0.93 Score=44.24 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=31.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAE 218 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~ 218 (566)
...++.|.|.+|+||||+|..++. .++|++. .-+..++...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES--SSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC--CCCHHHHHHHHHH
Confidence 346899999999999999998866 4556544 4455666655543
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.78 E-value=0.089 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 417
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.76 E-value=0.096 Score=49.58 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457899999999999999999877
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.72 E-value=0.1 Score=48.21 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc--ceEEEE
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR--KVDFSE 202 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~ 202 (566)
...|.|.|+.|+||||+|+.+.. ...++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45789999999999999999987 444443
No 419
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.68 E-value=0.18 Score=48.69 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=26.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEecc
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQ 205 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~ 205 (566)
....++|+|+|-||+||||+|..+.. .+.-+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45678999999999999999988876 456666543
No 420
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.64 E-value=0.091 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 421
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.63 E-value=0.075 Score=48.75 Aligned_cols=25 Identities=20% Similarity=-0.156 Sum_probs=20.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....++.|+|..|+||||++..+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHH
Confidence 3457899999999999999887765
No 422
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.59 E-value=0.093 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 446899999999999999999887
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.59 E-value=0.11 Score=48.86 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHh
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVA 195 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~ 195 (566)
...++.+.|.||+||||++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 35788999999999999998776
No 424
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.56 E-value=0.11 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998766
No 425
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.54 E-value=0.19 Score=55.35 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCccchHHHHHHHHHHHhc---------CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 153 ESFESRLSTLKAIQNALSD---------LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 153 ~~~~gr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.+..++.+...+.. .....+.++|.+|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999888887751 1223799999999999999999987
No 426
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.53 E-value=0.11 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.-.++|+|..|+|||||.+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45789999999999999998876
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.51 E-value=0.1 Score=50.37 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 428
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.48 E-value=0.096 Score=49.95 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 429
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.42 E-value=0.097 Score=49.12 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999998876
No 430
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.34 E-value=0.12 Score=46.15 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=42.2
Q ss_pred CCccceEEeccccccc-ccCCChHHHhcCccCcEEEecCCcccc-----CChhhhcccccceeeccCccc---CC--c--
Q 045507 451 CPHLDFLLMVCKDTLI-ETNIPEKFFSRIKKLKDVDMARMWLFS-----LPSSIDLLVNLQILCLHQYML---GD--I-- 517 (566)
Q Consensus 451 ~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l---~~--p-- 517 (566)
-..|+.|.+.++.-.. ......+.+..-+.|+.|+|++|.|.. +-..+..-+.|+.|+|+++.. .. -
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 3467777776554200 001112223445667777777776653 223444445577777765422 21 1
Q ss_pred --cccccCccCcEEeccCC
Q 045507 518 --AIIGKLKNLEILSIWGP 534 (566)
Q Consensus 518 --~~i~~L~~L~~L~l~~~ 534 (566)
..+..=+.|..|++..+
T Consensus 149 ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhCCCcCeEeccCC
Confidence 22333456677776654
No 431
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.30 E-value=0.12 Score=49.92 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4568999999999999999998875
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.24 E-value=0.11 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.|+|.+|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998764
No 433
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.21 E-value=0.061 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=18.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999877
No 434
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.12 E-value=0.23 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.|++|+||||+|+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.10 E-value=0.13 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 436
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.03 E-value=0.43 Score=47.48 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=51.2
Q ss_pred CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCC-hhhhcccccceeeccCcccCC--ccccccCccC
Q 045507 450 ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLP-SSIDLLVNLQILCLHQYMLGD--IAIIGKLKNL 526 (566)
Q Consensus 450 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L 526 (566)
.+..|+.+.+..+ ...+....|..+..|..+.+..+ +..++ ..+.++.+|+.+.+.++.+.. ...+.++.+|
T Consensus 238 ~~~~L~~i~lp~~----v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 238 GMKALDEIAIPKN----VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TCSSCCEEEECTT----CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred CCccceEEEcCCC----ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3455555555332 22344444555556666665433 33333 345556666666666655544 3445566666
Q ss_pred cEEeccCCCCCccch-hhcCCCCCCEEec
Q 045507 527 EILSIWGPDIKTLPE-ELGQLTKLRQLDL 554 (566)
Q Consensus 527 ~~L~l~~~~l~~lP~-~i~~L~~L~~L~l 554 (566)
+.+.|..+ +..++. .|.++++|+.+.+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 66666432 444432 3455555555554
No 437
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.03 E-value=0.14 Score=48.28 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+||||+.+.+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4567999999999999999998765
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.02 E-value=0.11 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998876
No 439
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.01 E-value=0.14 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|.+|+|||||++.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999998765
No 440
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.92 E-value=0.14 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999876
No 441
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.91 E-value=0.14 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 442
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.88 E-value=0.94 Score=56.87 Aligned_cols=192 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhc-----ceEEEEeccCCCHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHhc---------
Q 045507 177 IGVYGMGGIGKTTLVKEVAR-----KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEKVETRRANRLYERLKR--------- 242 (566)
Q Consensus 177 v~I~G~gGiGKTtLa~~v~~-----~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--------- 242 (566)
|.++|..|+|||++++.+.. ....++++...+...++..+-..+...... +
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~---------------~~G~~~~p~~ 1371 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTP---------------SGETVLRPTQ 1371 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECT---------------TSCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEecc---------------CCCcccCCCc
Q ss_pred -CCeEEEEEeCCCCcccccccccccCCCCCCC------------------------------------------------
Q 045507 243 -EKKILIVLDNIWKHVDLESIGIPFGDEHKGY------------------------------------------------ 273 (566)
Q Consensus 243 -~kr~LlVlDdv~~~~~~~~~~~~~~~~~~g~------------------------------------------------ 273 (566)
||+.++.+||+ ..-.....|.
T Consensus 1372 ~Gk~~VlFiDDi----------Nmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~ 1441 (3245)
T 3vkg_A 1372 LGKWLVVFCDEI----------NLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLT 1441 (3245)
T ss_dssp TTCEEEEEETTT----------TCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCC
T ss_pred CCceEEEEeccc----------CCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCC
Q ss_pred ------------ccccCccchHHHHHHHHHhCCCchHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCccchhhhhhhhhh
Q 045507 274 ------------DDVENLKLKSTAIDVAKACGGLPIALTTIGRAMRNKSVLEWKNALRELRIRTPSVVNFEKVRAGCVRA 341 (566)
Q Consensus 274 ------------~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~~ 341 (566)
.......+..+-..|+...-...-.+..++..+.....+-|..+...+... ...|..-...++.++
T Consensus 1442 ~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~--~k~HY~FnLRDLsrv 1519 (3245)
T 3vkg_A 1442 HRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPD--IQAHYIYSPRELSRW 1519 (3245)
T ss_dssp HHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTT--TSTTCCCCHHHHHHH
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCC--cCCCccccHHHHHHH
Q ss_pred HHhhhccCCCCCCcchhhHHHHHHhhhcc--ccccccHHHHHHHHHHHHHHHhhhch
Q 045507 342 TEETFSALYSSGIFYFNFILFKCCMGLGI--LQRANKMEDAYNKLHALLHELKDSCL 396 (566)
Q Consensus 342 l~lsy~~l~~p~~~~~~~~L~~~wia~g~--~~~~~~~~~~~~~~~~li~~L~~~~l 396 (566)
+.=-+.+.. |..+.-...++++|+.|.. +.+.-..++-...+.+++.+.+...|
T Consensus 1520 ~qGll~~~~-~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F 1575 (3245)
T 3vkg_A 1520 DRALLEAIQ-TMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHF 1575 (3245)
T ss_dssp HHHHHHHHH-TSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC-ccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
No 443
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.87 E-value=1.1 Score=45.82 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=31.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCCCHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNPNIKIIQGDIAE 218 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~~~~~i~~~i~~ 218 (566)
...++.|.|.+|+||||+|.+++. .++|++.. -+..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHH
Confidence 346899999999999999988765 35665554 445566666543
No 444
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.80 E-value=0.15 Score=43.51 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.-|.++|.+|+|||||...+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998876
No 445
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.78 E-value=0.13 Score=48.69 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999987
No 446
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.77 E-value=0.14 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999877
No 447
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.77 E-value=0.14 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 448
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.71 E-value=0.12 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-.|+|+|..|+|||||.+.+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4689999999999999998876
No 449
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.71 E-value=0.13 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 56899999999999999998874
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.67 E-value=0.16 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|.|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 451
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.65 E-value=0.22 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999877
No 452
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.64 E-value=0.29 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++++|+|..|.|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999987
No 453
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.59 E-value=0.15 Score=44.83 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.+|+|..|.|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999998875
No 454
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.58 E-value=0.17 Score=46.71 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|.|.|+.|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 455
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.56 E-value=0.13 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.+.+++|+|+.|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 468999999999999999998874
No 456
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.51 E-value=0.11 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|.|||||++.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 3567899999999999999999876
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.51 E-value=0.48 Score=56.07 Aligned_cols=79 Identities=22% Similarity=0.206 Sum_probs=52.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++.|.|.+|+||||||.++.. .++|++....++... ++.++.+.+. .+..+....+...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence 457999999999999999998866 678888877776542 5566554322 1222333334333
Q ss_pred HhcCCeEEEEEeCCCCc
Q 045507 240 LKREKKILIVLDNIWKH 256 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~~ 256 (566)
....+.-+||+|-+...
T Consensus 457 v~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHhcCCCEEEECCHHHh
Confidence 33445669999998644
No 458
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.50 E-value=0.15 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999988
No 459
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.32 E-value=0.17 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..++|.++|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988874
No 460
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.30 E-value=0.15 Score=43.46 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|.++|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
No 461
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.29 E-value=1.1 Score=46.00 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=30.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCCCHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNPNIKIIQGDI 216 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~~~~~i~~~i 216 (566)
...++.|.|.+|+||||+|..+.. .++|++... +..++...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHH
Confidence 356899999999999999998766 356655443 445555554
No 462
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.24 E-value=0.29 Score=43.20 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....|+|+|.+|+|||||...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999998887
No 463
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.24 E-value=0.35 Score=42.51 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 162 LKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 162 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+.++.+ +.....-.|.|+|.+|+|||||...+.+
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344555 3445566789999999999999999986
No 464
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.21 E-value=0.18 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHhc
Q 045507 174 VSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 174 ~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47888999999999999988776
No 465
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.20 E-value=0.32 Score=50.00 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 157 SRLSTLKAIQNALSDLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 157 gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+..+.+..+...+..++ +.+.|.|.+|.||||++..+..
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHH
Confidence 34555666666665543 4899999999999999998876
No 466
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.19 E-value=0.12 Score=55.16 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=29.8
Q ss_pred CccchHHHHHHHHHHHhcCCce-----------EEEEEecCCCcHHHHHHHHhc
Q 045507 154 SFESRLSTLKAIQNALSDLNVS-----------IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 154 ~~~gr~~~~~~l~~~L~~~~~~-----------vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.++|.+..++.+.-.+..+..+ -|.++|.+|+|||+||+.+++
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 4556666555554433333211 588999999999999999998
No 467
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.13 E-value=0.73 Score=47.14 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=54.2
Q ss_pred HHHHHh-cCCceEEEEEecCCCcHHHHH-HHHhc------ceEEEEeccCC-CHHHHHHHHHHHcCCCCc-------ccc
Q 045507 165 IQNALS-DLNVSIIGVYGMGGIGKTTLV-KEVAR------KVDFSEVSQNP-NIKIIQGDIAEKLGLVSC-------EKV 228 (566)
Q Consensus 165 l~~~L~-~~~~~vv~I~G~gGiGKTtLa-~~v~~------~~~wv~v~~~~-~~~~i~~~i~~~l~~~~~-------~~~ 228 (566)
.++.+. =.....++|+|..|+|||+|| ..+.+ .++++-+.+.. .+.++.+.+...-..... +..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 231 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEP 231 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCC
Confidence 344444 234567899999999999995 57776 24666677664 455666666543221111 111
Q ss_pred hH------HHHHHHHHHHh-cCCeEEEEEeCCCC
Q 045507 229 ET------RRANRLYERLK-REKKILIVLDNIWK 255 (566)
Q Consensus 229 ~~------~~~~~l~~~l~-~~kr~LlVlDdv~~ 255 (566)
.. .....+-++++ .|+..||++||+..
T Consensus 232 ~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 232 APLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 01 11234455554 37999999999853
No 468
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.11 E-value=0.17 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHhcc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVARK 197 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~~ 197 (566)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999873
No 469
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.02 E-value=0.18 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.786 Sum_probs=19.4
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6788899999999999987775
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.00 E-value=1.3 Score=45.22 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=25.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEec
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVS 204 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~ 204 (566)
...++.|.|.+|+||||+|.+++. .++|++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 346899999999999999988866 45565544
No 471
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.97 E-value=0.19 Score=49.55 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 457899999999999999999987
No 472
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.93 E-value=0.2 Score=43.83 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHhc-CCceEEEEEecCCCcHHHHHHHHhcce
Q 045507 164 AIQNALSD-LNVSIIGVYGMGGIGKTTLVKEVARKV 198 (566)
Q Consensus 164 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~ 198 (566)
++.+.+.. .....|+|+|.+|+|||||...+....
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~ 42 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGE 42 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34443334 456678999999999999999988643
No 473
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.90 E-value=0.19 Score=49.70 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+|||||.+.+.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3457899999999999999998876
No 474
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.86 E-value=0.26 Score=51.01 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHHh--cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 155 FESRLSTLKAIQNALS--DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 155 ~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...|.+..+.+.+... .....+|.+.|+.|+||||+|+.+..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 3455555555555442 33557899999999999999999987
No 475
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.82 E-value=0.17 Score=43.45 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.6
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
--|.|+|.+|+|||||...+.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4578999999999999999876
No 476
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.81 E-value=0.75 Score=46.04 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred ccccEEEeecCCCCCCCCCC-CCCccceEEecccccccccCCChHHHhcCccCcEEEecCCccccCChhhhcccccceee
Q 045507 430 KQCHAISLLNSSIPELPEGL-ECPHLDFLLMVCKDTLIETNIPEKFFSRIKKLKDVDMARMWLFSLPSSIDLLVNLQILC 508 (566)
Q Consensus 430 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~ 508 (566)
..+..+.+..+....-.... .++.+..+... ...++...|..+..|..+.+..+--.--...+.++.+|+.+.
T Consensus 253 ~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~------~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 253 TDLESISIQNNKLRIGGSLFYNCSGLKKVIYG------SVIVPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp SSCCEEEECCTTCEECSCTTTTCTTCCEEEEC------SSEECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEEC
T ss_pred ccceeEEcCCCcceeeccccccccccceeccC------ceeeccccccccccccccccccccceechhhhcCCCCCCEEE
Q ss_pred ccCcccCC--ccccccCccCcEEeccCCCCCccchh-hcCCCCCCEEec-----------cCCCCCccC
Q 045507 509 LHQYMLGD--IAIIGKLKNLEILSIWGPDIKTLPEE-LGQLTKLRQLDL-----------VNCFQLKVI 563 (566)
Q Consensus 509 L~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l-----------~~c~~l~~l 563 (566)
|..+ ++. ...+.++.+|+.+++..+ +..++.. +..+++|+.+++ .+|++|+.+
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
No 477
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.80 E-value=0.29 Score=43.76 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHHh-cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 165 IQNALS-DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 165 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
+++.+. ......|+++|.+|+|||||...+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344443 23344688999999999999998876
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.79 E-value=0.18 Score=48.34 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=24.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--ceEEEEe
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--KVDFSEV 203 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--~~~wv~v 203 (566)
..+++.|+|+.|+||||||..++. ...++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 347899999999999999999988 3334443
No 479
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.74 E-value=0.64 Score=47.60 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=53.9
Q ss_pred HHHHHh-cCCceEEEEEecCCCcHHHHH-HHHhc------ceEEEEeccCC-CHHHHHHHHHHHcCCC--------Cccc
Q 045507 165 IQNALS-DLNVSIIGVYGMGGIGKTTLV-KEVAR------KVDFSEVSQNP-NIKIIQGDIAEKLGLV--------SCEK 227 (566)
Q Consensus 165 l~~~L~-~~~~~vv~I~G~gGiGKTtLa-~~v~~------~~~wv~v~~~~-~~~~i~~~i~~~l~~~--------~~~~ 227 (566)
.++.+. =...+.++|+|..|+|||+|| ..+.+ .++++-+.+.. .+.++.+.+...-... .++.
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p 244 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDP 244 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCC
Confidence 344443 234567899999999999995 57777 34666777664 4556666665421111 1110
Q ss_pred ch-----HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 045507 228 VE-----TRRANRLYERLK-REKKILIVLDNIWK 255 (566)
Q Consensus 228 ~~-----~~~~~~l~~~l~-~~kr~LlVlDdv~~ 255 (566)
.. ......+-++++ .|+..||++||+..
T Consensus 245 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 245 ASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 00 112334455554 37999999999853
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.71 E-value=0.17 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.5
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
--|.++|.+|+|||||+..+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3578999999999999999876
No 481
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.71 E-value=0.82 Score=54.14 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=58.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCccc------chHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCEK------VETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~------~~~~~~~~l~~~ 239 (566)
..++|-|+|..|+||||||.++.. .++|+.+....++.- ++.++.+.+.. ...+....+...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~ 1504 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1504 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHH
Confidence 458999999999999999998875 678888888777764 67777665432 234455556666
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
++++.--+||+|-|..
T Consensus 1505 ~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1505 ARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHTCCSEEEESCSTT
T ss_pred HHcCCCCEEEEccHHh
Confidence 6767777999998853
No 482
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.65 E-value=0.6 Score=56.04 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=51.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCCHHHHHHHHHHHcCCCCcc------cchHHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPNIKIIQGDIAEKLGLVSCE------KVETRRANRLYER 239 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 239 (566)
..+++.|+|.+|+||||||.++.. .++|++....++... ++.++.+.+. .+..+....+...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 457999999999999999998876 578887777766542 5556553221 1223333334333
Q ss_pred HhcCCeEEEEEeCCCC
Q 045507 240 LKREKKILIVLDNIWK 255 (566)
Q Consensus 240 l~~~kr~LlVlDdv~~ 255 (566)
....+.-+||+|-+..
T Consensus 457 v~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHTCCSEEEESCGGG
T ss_pred HHhcCCcEEEECCHHH
Confidence 3334566899998853
No 483
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.62 E-value=0.19 Score=43.73 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..|+|+|.+|+|||||...+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999876
No 484
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.61 E-value=0.18 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
--|+|+|.+|+|||||...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4589999999999999998876
No 485
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.57 E-value=0.28 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...++.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 457899999999999999999987
No 486
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.56 E-value=0.89 Score=47.27 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=31.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc--------ceEEEEeccCCCHHHHHHHHH
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR--------KVDFSEVSQNPNIKIIQGDIA 217 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~--------~~~wv~v~~~~~~~~i~~~i~ 217 (566)
...++.|.|.+|+||||+|.++.. .++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHH
Confidence 357899999999999999988765 356655543 4556665554
No 487
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.54 E-value=0.26 Score=43.27 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.....|.|+|.+|+|||||...+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999887
No 488
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.54 E-value=0.14 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....|.|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 489
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.44 E-value=0.41 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 490
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.41 E-value=0.74 Score=45.78 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHHh------------cCCceEEEEEe-cCCCcHHHHHHHHhc-------ceEEEEeccCCCHH
Q 045507 156 ESRLSTLKAIQNALS------------DLNVSIIGVYG-MGGIGKTTLVKEVAR-------KVDFSEVSQNPNIK 210 (566)
Q Consensus 156 ~gr~~~~~~l~~~L~------------~~~~~vv~I~G-~gGiGKTtLa~~v~~-------~~~wv~v~~~~~~~ 210 (566)
..-++.+.++.+... ....++|+|+| -||+||||+|..+.. .+..+......++.
T Consensus 113 q~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~ 187 (373)
T 3fkq_A 113 QRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTD 187 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHH
T ss_pred CCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHH
Confidence 344666677766541 23578999996 899999999988776 56777766444433
No 491
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.25 E-value=0.2 Score=43.06 Aligned_cols=21 Identities=38% Similarity=0.846 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|.++|.+|+|||||...+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998876
No 492
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.23 E-value=0.2 Score=49.36 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457899999999999999999886
No 493
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.20 E-value=0.19 Score=43.05 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|.++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 494
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.18 E-value=0.2 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.6
Q ss_pred eEEEEEecCCCcHHHHHHHHhc
Q 045507 175 SIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 175 ~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
.-|.++|.+|+|||||...+.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999998876
No 495
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.16 E-value=0.23 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
...+++|+|..|+|||||.+.+.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 457899999999999999999987
No 496
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.16 E-value=0.37 Score=47.23 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.9
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-....+++|+|.+|+|||||.+.+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999874
No 497
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.12 E-value=0.44 Score=46.57 Aligned_cols=38 Identities=32% Similarity=0.292 Sum_probs=27.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHhc-------ceEEEEeccCCC
Q 045507 171 DLNVSIIGVYGMGGIGKTTLVKEVAR-------KVDFSEVSQNPN 208 (566)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLa~~v~~-------~~~wv~v~~~~~ 208 (566)
....+++.+.|-||+||||+|..+.. .+.-+......+
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 44567888889999999999988776 455555554333
No 498
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.08 E-value=0.31 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHhc
Q 045507 172 LNVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
....+++|+|..|+||||+.+.+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445999999999999999998866
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.08 E-value=0.21 Score=42.93 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 045507 176 IIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 176 vv~I~G~gGiGKTtLa~~v~~ 196 (566)
-|.|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998864
No 500
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.07 E-value=0.22 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHhc
Q 045507 173 NVSIIGVYGMGGIGKTTLVKEVAR 196 (566)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLa~~v~~ 196 (566)
..+.|.|.|..|+||||||..+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999987
Done!