Query 045509
Match_columns 291
No_of_seqs 208 out of 715
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 4.5E-34 1.5E-38 221.2 6.0 73 130-202 2-74 (76)
2 1wj2_A Probable WRKY transcrip 100.0 5.1E-34 1.7E-38 221.8 5.0 73 130-202 5-77 (78)
3 2rpr_A Flywch-type zinc finger 45.4 11 0.00037 28.2 2.2 47 142-201 24-73 (87)
4 1cz6_A Protein (androctonin); 34.9 10 0.00034 23.6 0.4 8 164-171 16-23 (26)
5 1xiw_B T-cell surface glycopro 14.1 28 0.00096 26.0 -0.7 27 143-169 17-53 (79)
6 3ed7_A Tsase, TS, thymidylate 7.4 76 0.0026 29.6 -0.5 12 143-154 116-127 (295)
7 3kgb_A Thymidylate synthase 1/ 7.3 75 0.0026 29.6 -0.6 12 143-154 113-124 (294)
8 1xiw_A T-cell surface glycopro 6.9 86 0.0029 25.2 -0.4 29 142-170 32-79 (105)
9 1zla_K Latent nuclear antigen; 6.8 1.3E+02 0.0046 18.5 0.5 9 283-291 1-9 (26)
10 1ter_A Tertiapin; toxin; NMR { 6.0 1.1E+02 0.0038 18.9 -0.1 12 145-156 12-23 (26)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=4.5e-34 Score=221.16 Aligned_cols=73 Identities=59% Similarity=1.063 Sum_probs=69.7
Q ss_pred eeEEeccCccCCCCccchhhhcCccccCCCCCCcccccccCCccccccceecccCCCCEEEEEEecccCCCCC
Q 045509 130 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTV 202 (291)
Q Consensus 130 r~~~~t~se~d~~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~~~C~akKqVqrs~~Dp~~~~~tY~G~H~H~~~ 202 (291)
++++.|.+++++++|||+|||||||.|||++|||+|||||+.+|+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 5778888999999999999999999999999999999999999999999999999999999999999999865
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=5.1e-34 Score=221.83 Aligned_cols=73 Identities=59% Similarity=1.075 Sum_probs=67.8
Q ss_pred eeEEeccCccCCCCccchhhhcCccccCCCCCCcccccccCCccccccceecccCCCCEEEEEEecccCCCCC
Q 045509 130 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTV 202 (291)
Q Consensus 130 r~~~~t~se~d~~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~~~C~akKqVqrs~~Dp~~~~~tY~G~H~H~~~ 202 (291)
++++.|.+++++++|||+|||||||.|||++|||+|||||+.+|+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus 5 ~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 5 SSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp ---CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 5677888999999999999999999999999999999999999999999999999999999999999999865
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=45.37 E-value=11 Score=28.16 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=29.1
Q ss_pred CCccchhhhcCccccCCCCCCcccccccC---CccccccceecccCCCCEEEEEEecccCCCC
Q 045509 142 LEDGYRWRKYGQKAVKNSPFPRSYYRCTN---SKCTVKKRVERSSEDPTIVITTYEGQHCHHT 201 (291)
Q Consensus 142 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~---~~C~akKqVqrs~~Dp~~~~~tY~G~H~H~~ 201 (291)
+-|||.-.+--+ ...+.|.+|+. .+|.|+=.... ++ +.-.+.|||+.
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p 73 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQP 73 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCC
Confidence 458887664221 13468999997 37999743322 11 23468899964
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=34.92 E-value=10 Score=23.61 Aligned_cols=8 Identities=63% Similarity=1.497 Sum_probs=6.6
Q ss_pred ccccccCC
Q 045509 164 SYYRCTNS 171 (291)
Q Consensus 164 sYYRCt~~ 171 (291)
.||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=14.10 E-value=28 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=18.6
Q ss_pred CccchhhhcCccc--------cC--CCCCCccccccc
Q 045509 143 EDGYRWRKYGQKA--------VK--NSPFPRSYYRCT 169 (291)
Q Consensus 143 ~DGy~WRKYGQK~--------Ik--gs~~pRsYYRCt 169 (291)
..++.|.|-|... +. ...-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5678899987642 22 344599999994
No 6
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=7.36 E-value=76 Score=29.65 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.5
Q ss_pred CccchhhhcCcc
Q 045509 143 EDGYRWRKYGQK 154 (291)
Q Consensus 143 ~DGy~WRKYGQK 154 (291)
.=|++||.+|.+
T Consensus 116 vYG~QwR~~~~~ 127 (295)
T 3ed7_A 116 VYGFQWRHFGAE 127 (295)
T ss_dssp CTHHHHHHBTCC
T ss_pred chhhhhhccCCc
Confidence 447999999865
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=7.30 E-value=75 Score=29.63 Aligned_cols=12 Identities=33% Similarity=1.149 Sum_probs=9.3
Q ss_pred CccchhhhcCcc
Q 045509 143 EDGYRWRKYGQK 154 (291)
Q Consensus 143 ~DGy~WRKYGQK 154 (291)
.=|++||.+|.+
T Consensus 113 vYG~QwR~~~~~ 124 (294)
T 3kgb_A 113 IYGFQWRHFGAR 124 (294)
T ss_dssp CHHHHHHSBTCC
T ss_pred ccchhhhcCCCc
Confidence 347899999864
No 8
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=6.90 E-value=86 Score=25.20 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=19.0
Q ss_pred CCccchhhhcCccc----------------cCCCCC---CcccccccC
Q 045509 142 LEDGYRWRKYGQKA----------------VKNSPF---PRSYYRCTN 170 (291)
Q Consensus 142 ~~DGy~WRKYGQK~----------------Ikgs~~---pRsYYRCt~ 170 (291)
+.+...|.|-|+.. +.++-. ||+||.|..
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 34558888877652 334433 899999963
No 9
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=6.77 E-value=1.3e+02 Score=18.55 Aligned_cols=9 Identities=67% Similarity=1.298 Sum_probs=6.3
Q ss_pred CCCCCCCCC
Q 045509 283 IVPPGMRNR 291 (291)
Q Consensus 283 ivp~~mr~~ 291 (291)
|.|++||-+
T Consensus 1 mappgmrlr 9 (26)
T 1zla_K 1 MAPPGMRLR 9 (26)
T ss_pred CCCCcceee
Confidence 468888853
No 10
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=6.02 E-value=1.1e+02 Score=18.93 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=8.1
Q ss_pred cchhhhcCcccc
Q 045509 145 GYRWRKYGQKAV 156 (291)
Q Consensus 145 Gy~WRKYGQK~I 156 (291)
-..|+|.|.|..
T Consensus 12 hmcwkkcgkk~~ 23 (26)
T 1ter_A 12 HMCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHHCC--
T ss_pred hHHHHHhCcccc
Confidence 357999998864
Done!