BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045511
(209 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 124/203 (61%), Positives = 152/203 (74%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN 65
LK LKP++S Q QIHA+++ P+PHI N LL L S P+N + LYN+ML PSS+N
Sbjct: 3 LKPLKPSISIAQFTQIHAKLLTNPKPHIFNPLLGSLVNSIFPENGLFLYNQMLRYPSSHN 62
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
H+TFT ALKAC H QKGLEIHAH+IK GHL DIFIQNSLLHFY+ D+ SA IF+
Sbjct: 63 HFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFD 122
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKA 185
S+ PDVV+WT+IISGLSK GF KEA+ F ++V+PN+ TLV+ LSACSSL KLGKA
Sbjct: 123 SIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSACSSLRCLKLGKA 182
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH +R LNE N+IL+NA+LDF
Sbjct: 183 IHGLRMRTLNEENVILENALLDF 205
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 9/168 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P +++ +++ L++ + A+ +K L+ N T AL ACS + G
Sbjct: 124 IPDPDVVSWTSIISGLSKLGFEKEAL---SKFLSMNVRPNSTTLVTALSACSSLRCLKLG 180
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH ++ + ++ ++N+LL FYV + SA +F + DVV+WTT+I G ++
Sbjct: 181 KAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQS 240
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
G +EA+ +F + + PN TLV+VLSACSS+ + LG+ +H++
Sbjct: 241 GLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSY 288
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
K+P+ +++ T++ QS + A+ ++ M++ + N T L ACS A
Sbjct: 221 KMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALH 280
Query: 84 KGLEIHAHVIKYGHLHDIFIQ----NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G +H+++ HD+ I N+L++ YV ++ A IF ++ D+V+W+TII
Sbjct: 281 LGQWVHSYI---NSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKAIEHKDIVSWSTII 337
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
SGL+ G K+A +F + V P+ T + +LSACS G
Sbjct: 338 SGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGG 379
>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/204 (55%), Positives = 144/204 (70%), Gaps = 5/204 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPH-ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
LK PT + QLNQIHA ++K +P I NTLL L+ PQ+A+ LYN+M+ +S+
Sbjct: 19 LKHPIPTCTLNQLNQIHAHLLKTHKPPLIFNTLLPSLS----PQDALLLYNQMVLHRTSH 74
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
NH+TFT AL A S HA K LEIHA IK GH DIFIQN+LLH YV + A +F
Sbjct: 75 NHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLHSYVVENNFVFAKSVF 134
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
S+ PDVV+WT+IISGLSKCGF +EAI F +DVKPN +TLVSV+SAC L + + GK
Sbjct: 135 KSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMDVKPNTSTLVSVVSACCGLRAVRFGK 194
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
AIH +SLR+++ +NIILDNA+LDF
Sbjct: 195 AIHGYSLRSMDGDNIILDNALLDF 218
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P +++ +++ L++ + AI + M P N T + AC A + G
Sbjct: 137 ISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMDVKP---NTSTLVSVVSACCGLRAVRFG 193
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH + ++ +I + N+LL FYV + SA +F + DV++WTT++ GL++
Sbjct: 194 KAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQG 253
Query: 146 GFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
G +EA+++F G + PN TLV+VL+ACSSL + LG+ +H++
Sbjct: 254 GLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSY 301
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHV-I 93
T++ L Q + A+ ++ M+ + N T L ACS A G +H+++
Sbjct: 245 TMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYIST 304
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+Y + D + N+L++ Y D++ A ++FN + D+++W+TII G++ G A+
Sbjct: 305 RYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQ 364
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
F + V P+ T + +LSACS G
Sbjct: 365 FFSLMLVHGVSPDDVTFIGLLSACSHAG 392
>gi|357446587|ref|XP_003593569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482617|gb|AES63820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 528
Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 146/206 (70%), Gaps = 11/206 (5%)
Query: 9 LKPTLSFKQLNQI----HAQIIKIPQPHILNTLLKLLTQSSTPQNAI-PLYNKMLNCPSS 63
+KP + LNQI QII P P +LN LKLL++S A L N+ML+C SS
Sbjct: 1 MKP----QNLNQIAKLSQFQIIN-PNPQLLNQNLKLLSKSHDNVKAFFNLCNQMLSCSSS 55
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
+NHYTFT ALKAC HAH KGLEIHA +IK GH+ D FI+N+LL+FY++ D+ SA ++
Sbjct: 56 HNHYTFTHALKACCSYHAHAKGLEIHARLIKSGHIFDGFIKNTLLYFYLSSNDVVSATRV 115
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLG 183
F S+ PDVV+WT++ISGLSKCGF EAI+ F I+VKPNA TLVS +SACSS+G+ K G
Sbjct: 116 FKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKPNALTLVSAISACSSIGAIKFG 175
Query: 184 KAIHAHSLRNLN-ENNIILDNAVLDF 208
KAIHA+ L++L + NI+ NA LD
Sbjct: 176 KAIHAYGLKSLMIDGNIVFYNAALDL 201
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P +++ +L+ L++ AI ++ + P N T A+ ACS A + G
Sbjct: 119 IPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKP---NALTLVSAISACSSIGAIKFG 175
Query: 86 LEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
IHA+ +K + +I N+ L Y +A +F + DV++WTT++ ++
Sbjct: 176 KAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYAR 235
Query: 145 CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
G EA+++F + + +PN +T+V+VLSAC+S+GS LG +H + + ++
Sbjct: 236 GGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKRID 290
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 26 IKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAH 82
+K+ + +++ TLL + A+ ++ +M+ + + N T L AC+ +
Sbjct: 216 VKMSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSL 275
Query: 83 QKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G +H ++ K L D I N+L++ YV D+ ++FN VV DV++W T+I G
Sbjct: 276 SLGCWVHDYIEKRIDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICG 335
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
L+ G+ K+ + MF + V P+ T + +LSACS +G
Sbjct: 336 LAMNGYGKQVVQMFSHMLVHGVLPDDVTFIGLLSACSHVG 375
>gi|217074958|gb|ACJ85839.1| unknown [Medicago truncatula]
gi|388521431|gb|AFK48777.1| unknown [Medicago truncatula]
Length = 515
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L N+ML+C SS+NHYTFT ALKAC HAH KGLEIHA +IK GH+ D FI+N+LL+FY+
Sbjct: 45 LCNQMLSCSSSHNHYTFTHALKACCSYHAHAKGLEIHARLIKSGHIFDGFIKNTLLYFYL 104
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLS 172
+ D+ SA ++F S+ PDVV+WT++ISGLSKCGF EAI+ F I+VKPNA TLVS +S
Sbjct: 105 SSNDVVSATRVFKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKPNALTLVSAIS 164
Query: 173 ACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVLDF 208
ACSS+G+ K GKAIHA+ L++L + NI+ NA LD
Sbjct: 165 ACSSIGAIKFGKAIHAYGLKSLMIDGNIVFYNAALDL 201
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P +++ +L+ L++ AI ++ + P N T A+ ACS A + G
Sbjct: 119 IPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKP---NALTLVSAISACSSIGAIKFG 175
Query: 86 LEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
IHA+ +K + +I N+ L Y +A +F + DV++WTT++ ++
Sbjct: 176 KAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYAR 235
Query: 145 CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
G EA+++F + + +PN +T+V+VLSAC+S+GS LG +H + + ++
Sbjct: 236 GGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKRID 290
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 26 IKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAH 82
+K+ + +++ TLL + A+ ++ +M+ + + N T L AC+ +
Sbjct: 216 VKMSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSL 275
Query: 83 QKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G +H ++ K L D I N+L++ YV D+ ++FN VV DV++W T+I G
Sbjct: 276 SLGCWVHDYIEKRIDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICG 335
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
L+ + K+ + MF + V P+ T + +LSACS +G
Sbjct: 336 LAMNEYGKQVVQMFSHMLVHGVLPDDVTFIGLLSACSHVG 375
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/148 (64%), Positives = 114/148 (77%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
P S+NH+TFT ALKAC H QKGLEIHAH+IK GHL DIFIQNSLLHFY+ D+ SA
Sbjct: 13 PISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSA 72
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSR 180
IF+S+ PDVV+WT+IISGLSK GF KEA+ F ++V+PN+ TLV+ LS CSSL
Sbjct: 73 SLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSTCSSLRCL 132
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
KLGKAIH +R LNE N+IL+NA+LDF
Sbjct: 133 KLGKAIHGLRMRTLNEENVILENALLDF 160
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P +++ +++ L++ + A+ +K L+ N T AL CS + G
Sbjct: 79 IPDPDVVSWTSIISGLSKLGFEKEAL---SKFLSMNVRPNSTTLVTALSTCSSLRCLKLG 135
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH ++ + ++ ++N+LL FYV + SA +F + DVV+WTT+I G ++
Sbjct: 136 KAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQS 195
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
G +EA+ +F + + PN TLV+VLSACSS+ + LG+ +H++
Sbjct: 196 GLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSY 243
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
K+P+ +++ T++ QS + A+ ++ M++ + N T L ACS A
Sbjct: 176 KMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALH 235
Query: 84 KGLEIHAHVIKYGHLHDIFIQ----NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G +H+++ HD+ I N+L++ YV ++ A IF + D+V+W+TII
Sbjct: 236 LGQWVHSYI---NSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTII 292
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
SGL+ G K+A +F + + P+ T + +LSACS G
Sbjct: 293 SGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSACSHGG 334
>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 521
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 137/207 (66%), Gaps = 14/207 (6%)
Query: 13 LSFKQLNQI----HAQIIKIPQPHILNTLLKLLTQSSTPQNAI-PLYNKMLNCPSSYNHY 67
+ + LNQI Q+I P P LN LL LT S QNA LYN++L+ P S+NHY
Sbjct: 1 MKVQNLNQIAIRAQQQLITNPNPQFLNPLLSQLTNS---QNAFFDLYNQILSHPFSHNHY 57
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TFT AL+AC H+ K LEIHAH++K GH D+F+QNSLLHFY+ D+ SA +F S+
Sbjct: 58 TFTHALRACYSHHSRSKALEIHAHLVKSGHYLDLFLQNSLLHFYLAHNDVVSASNLFRSI 117
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLGSRKL 182
PDVV+WT+++SGL+K GF +A+ F ++ V+PNA TLV+ L ACSSLG+ L
Sbjct: 118 PSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGALGL 177
Query: 183 GKAIHAHSLRNL-NENNIILDNAVLDF 208
GK+ HA+ LR L + N+I DNAVL+
Sbjct: 178 GKSAHAYGLRMLIFDGNVIFDNAVLEL 204
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 9/171 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAHQ 83
IP P +++ +L+ L +S A+ + M P N T AL ACS A
Sbjct: 117 IPSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGALG 176
Query: 84 KGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G HA+ ++ ++ N++L Y + +A +F+ V DVV+WTT++ G
Sbjct: 177 LGKSAHAYGLRMLIFDGNVIFDNAVLELYAKCGALKNAQNLFDKVFARDVVSWTTLLMGY 236
Query: 143 SKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
++ G+ +EA +F + +PN T+V+VLSA +S+G+ LG+ +H++
Sbjct: 237 ARGGYCEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGALSLGQWVHSY 287
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-I 93
TLL + + A ++ +M LN + N T L A + A G +H+++
Sbjct: 231 TLLMGYARGGYCEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGALSLGQWVHSYIDS 290
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+Y + D I+N+LL+ YV D+ ++F+ +V D ++W T+I GL+ G+ K+ ++
Sbjct: 291 RYDLVVDGNIENALLNMYVKCGDMQMGLRVFDMIVHKDAISWGTVICGLAMNGYEKKTLE 350
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + V+P+ T + VLSACS G
Sbjct: 351 LFSRMLVEVVEPDDVTFIGVLSACSHAG 378
>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
Length = 725
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 109/147 (74%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+S+NH+TFT AL A S HA K LEIHA IK GH DIFIQN+LLH YV + A
Sbjct: 6 TSHNHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLHSYVVENNXVFAK 65
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRK 181
+F S+ PDVV+WT+IISGLSKCGF +EAI F +DVKPN +TLVSV+SAC L + +
Sbjct: 66 SVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMDVKPNTSTLVSVVSACCGLRAVR 125
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
GKAIH +SLR+++ +NIILDNA+LDF
Sbjct: 126 FGKAIHGYSLRSMDGDNIILDNALLDF 152
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P +++ +++ L++ + AI + M P N T + AC A + G
Sbjct: 71 ISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMDVKP---NTSTLVSVVSACCGLRAVRFG 127
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH + ++ +I + N+LL FYV + SA +F + DV++WTT++ GL++
Sbjct: 128 KAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQG 187
Query: 146 GFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
G +EA+++F G + PN TLV+VL+ACSSL + LG+ +H++
Sbjct: 188 GLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSY 235
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHV-I 93
T++ L Q + A+ ++ M+ + N T L ACS A G +H+++ I
Sbjct: 179 TMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISI 238
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+Y + D + N+L++ Y D++ A ++FN + D+++W+TII G++ G A+
Sbjct: 239 RYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQ 298
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
F + V P+ T + +LSACS G
Sbjct: 299 FFSLMLVHGVSPDDVTFIGLLSACSHAG 326
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+F LNQ + +P NTL+ S TP+ A +Y +++ + YTF L
Sbjct: 57 AFDFLNQTDLHVGTLP----YNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVL 112
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KAC+ Q+G ++H +K G L D+++QNSLLHFY A ++F+ ++ DVV
Sbjct: 113 KACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVV 172
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+WT +ISG + G EAI++F +DV PN T VSVL AC +G +GK +H +
Sbjct: 173 SWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKR 232
Query: 194 LNENNIILDNAVLD 207
+++ NA++D
Sbjct: 233 AFGIGLVVGNALVD 246
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ ++ AI L+ KM P N TF L AC G +H V K
Sbjct: 177 LISGYVRTGLFDEAINLFLKMDVVP---NVATFVSVLVACGRMGYLSMGKGVHGLVYKRA 233
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ + N+L+ YV + + A ++F+ + D+V+WT+IISGL +C K+++++F
Sbjct: 234 FGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFY 293
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ V+P+ L SVLSAC+SLG+ G+ + + R E +I + A++D
Sbjct: 294 DMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVD 347
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P I++ +++ L Q P++++ L+ M + T L AC+ A
Sbjct: 263 ELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDY 322
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + ++ + G DI I +L+ Y I A IFN + ++ TW ++ GL+
Sbjct: 323 GRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAM 382
Query: 145 CGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKA 185
G EA+ ++ G ++PN T +++L+AC G G++
Sbjct: 383 HGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRS 426
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+F LNQ + +P NTL+ S TP+ A +Y +++ + YTF L
Sbjct: 57 AFDFLNQTDLHVGTLPY----NTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVL 112
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KAC+ Q+G ++H +K G L D+++QNSLLHFY A ++F+ ++ DVV
Sbjct: 113 KACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVV 172
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+WT +ISG + G EAI++F +DV PN T VSVL AC +G +GK +H +
Sbjct: 173 SWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKR 232
Query: 194 LNENNIILDNAVLD 207
+++ NA++D
Sbjct: 233 AFGIGLVVGNALVD 246
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ ++ AI L+ KM P N TF L AC G +H V K
Sbjct: 177 LISGYVRTGLFDEAINLFLKMDVVP---NVATFVSVLVACGRMGYLSMGKGVHGLVYKRA 233
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ + N+L+ YV + + A ++F+ + D+V+WT+IISGL +C K+++++F
Sbjct: 234 FGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFY 293
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ V+P+ L SVLSAC+SLG+ G+ + + R E +I + A++D
Sbjct: 294 DMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVD 347
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P I++ +++ L Q P++++ L+ M + T L AC+ A
Sbjct: 263 ELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDY 322
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + ++ + G DI I +L+ Y I A IFN + ++ TW ++ GL+
Sbjct: 323 GRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAM 382
Query: 145 CGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKA 185
G EA+ ++ G ++PN T +++L+AC G G++
Sbjct: 383 HGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRS 426
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 47/248 (18%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIK-IPQPHILNTL-------------------LKLLTQSS 45
L +L+ S K L QIHA IIK +P P T+ L LL Q
Sbjct: 26 LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 85
Query: 46 TPQNAIPLYNKMLNCPSSYNH---------------------YTFTQALKACSLAHAHQK 84
TP +PLYN ++ ++ N+ YT LKAC+ + A ++
Sbjct: 86 TPN--LPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE 143
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G E+H IK G D+++ N+L+ Y I SA ++F++ D+V+WTT+I G K
Sbjct: 144 GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVK 203
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN-NII 200
GF +E + +F CG +++ + TLV VLS+C+ LG +LG+ +H + +RN N N ++
Sbjct: 204 MGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVF 263
Query: 201 LDNAVLDF 208
+ NA++D
Sbjct: 264 VGNALVDM 271
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 105/186 (56%), Gaps = 6/186 (3%)
Query: 29 PQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
PQ +++ T+++ + + + L+ +M + T L +C+ + G
Sbjct: 187 PQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGR 246
Query: 87 EIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H ++I+ +++ D+F+ N+L+ Y+ D A ++F + +VV+W ++ISGL++
Sbjct: 247 KLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQK 306
Query: 146 GFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G KE++ MF + VKP+ TLV+VL++C++LG +LGK +HA+ RN + +
Sbjct: 307 GQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIG 366
Query: 203 NAVLDF 208
NA++D
Sbjct: 367 NALVDM 372
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L Q + ++ ++ KM + T L +C+ + G +HA++ +
Sbjct: 297 NSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDR 356
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D FI N+L+ Y I A +F ++ DV ++T +I GL+ G +A+D+
Sbjct: 357 NQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDL 416
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGK 184
F + ++P+ T V VL+ACS +G + G+
Sbjct: 417 FSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 449
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 106/186 (56%), Gaps = 3/186 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + NTLL+ L QS P++AI Y K ++ TF LKAC+ +A ++G
Sbjct: 370 IESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEG 429
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H+HVIK G L DIF+ NSL+H Y D+ A IF+ ++ DVV+W ++I G S+
Sbjct: 430 EQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQR 489
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
KE + +F +V+ + T+V V+SAC+ LG + + + RN E ++ L
Sbjct: 490 NRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLG 549
Query: 203 NAVLDF 208
N ++D+
Sbjct: 550 NTLIDY 555
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VK 161
N+++H Y ++ SA +IF+ + D+++W+++I S+ +++++F + VK
Sbjct: 581 NAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVK 640
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+A + SVLSAC+ LG+ LGK IH + RN + + I++N+++D
Sbjct: 641 PDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLID 686
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T++ A+ L+ M+ S + T + A S G +H + +K G + D
Sbjct: 48 TRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDA 107
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+ NSL+ Y + + ++ ++F+ ++ ++V+WT+IISG + G EA+++F +
Sbjct: 108 RVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR 167
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKA 185
++PN T +SV++ACS G + G A
Sbjct: 168 AGIRPNRITFLSVINACSHGGLVEQGLA 195
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP +++ +++ +Q+S +++ L+ +M + L AC+ A
Sbjct: 602 QIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDL 661
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH +V + D ++NSL+ + + A Q+F + D ++W +II GL+
Sbjct: 662 GKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLAN 721
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSS 176
GF EA+++F + +PN T + VL AC++
Sbjct: 722 NGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACAN 756
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 87 EIHAHVIKYGHLHDI-FIQNSLLHFY-VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
++HAH++ G LH+ + + ++ Y + D+ AH++F + P W T++ GL++
Sbjct: 329 KLHAHLVVSG-LHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQ 387
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
K+AI + +KP+ T VL AC+ + K G+ +H+H ++
Sbjct: 388 SDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIK 438
Score = 42.7 bits (99), Expect = 0.099, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 172
+I A +F+ + +VV+WT +I G ++ + EA+ +F + + P+ T+++V+
Sbjct: 21 EIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVP 80
Query: 173 ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
A S+LG +G+ +H + ++ ++ + N+++D
Sbjct: 81 AISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDL 116
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 1/174 (0%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+L+ PQ A+ +Y +M+ + +TF LKACS ++G ++H V+
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G L D ++QNSL+ Y D A ++F+ ++ DVV+W ++ISG K G EAI
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F +DV+P+ TLVSVL+AC+ G GK IH R + N++L NA+LD
Sbjct: 193 VFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRF-KVNLVLGNAMLD 245
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 11/171 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ ++ AI ++ +M PS T L AC+ G IH VI+
Sbjct: 175 NSLISGFMKAGHFDEAISVFFRMDVEPS---MTTLVSVLAACARNGDLCTGKGIHG-VIE 230
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + N++L YV + A IF+ + D+V+WT +I+GL + K+++++
Sbjct: 231 RRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLEL 290
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
F + + P+A L SVLSAC+SLG+ G +H + +N+ I D
Sbjct: 291 FSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEY----INQRGIKWD 337
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 27 KIPQPHILNTLLKL--LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P I++ + + L QS P+ ++ L++ M S + T L AC+
Sbjct: 262 ELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDF 321
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++ + G DI I +++ Y I A +IF S+ + TW ++ GL+
Sbjct: 322 GTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAM 381
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G EA+++F + VKPN T +++L+AC G G+
Sbjct: 382 HGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGR 424
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ P+ A +Y +++ + +TF LK+C+ +G ++H +I
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + +I+++NSL+HFY K A ++F+ ++ DVV+WT +ISG + G EA+
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+F +DV+PNA T VSVL AC G +GK IH S ++ + + NA++D
Sbjct: 122 LFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDM 176
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
A+ L+ +M P N TF L AC G IH K + + N+L
Sbjct: 117 DEAVGLFLRMDVEP---NAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNAL 173
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ YV + A Q+F+ + D+V+WT+IISGL +C KEA+++F + ++P+
Sbjct: 174 MDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDG 233
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L SVLSAC+ LG+ G+ +H H R + +I + A++D
Sbjct: 234 IILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDM 277
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++ L Q + P+ A+ L+ M + + T L AC+ A G +H H+ +
Sbjct: 202 TSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDR 261
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DI I +++ Y I + QIFN + +V+TW +++GL+ G + +++
Sbjct: 262 KAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLEL 321
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + ++PN T +++L+AC G
Sbjct: 322 FEEMVRVGMRPNEVTFLAILTACCHCG 348
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 6 LKS-LKPTLSFKQLNQIHAQI----------------IKIPQPHILNTLLKLLTQSSTPQ 48
LKS K + K L QIHA I I+ P + NT+++ +S+ PQ
Sbjct: 55 LKSHFKKCSTVKDLKQIHACIVQSGFEQNLFVIVFENIECPDEFLWNTMIRGFGKSNEPQ 114
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A Y +M +++TF+ +K C + G ++H V+KYG +F++N+L+
Sbjct: 115 RAFEYYKRMQEEGLMADNFTFSFLIKVCGQLGSVLLGKQMHCSVLKYGFESHVFVRNTLI 174
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
H Y KD + Q+F + P++V W T+I CG KEA+DMF + ++P+
Sbjct: 175 HMYGIFKDFEISRQLFEEIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEA 234
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII-LDNAVLD 207
TLV +L+ACS+LG +G+ IH+ + N + ++N+++D
Sbjct: 235 TLVVILAACSALGELDIGRWIHS-CISNTGLGRFVEINNSIID 276
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P ++ NT++ + A+ ++++ML + T L ACS
Sbjct: 192 EIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSALGELDI 251
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+ + G + I NS++ Y + A++ FN + + VTW T+I GL+
Sbjct: 252 GRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAFNKMSQRNTVTWNTMILGLAT 311
Query: 145 CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
G EA+ +F + ++P++ T + VL ACS G
Sbjct: 312 HGHTNEALVLFSKMLEQKLMEPDSVTFLGVLCACSHGG 349
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 6/183 (3%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKML-----NCPSSYNHYTFTQALKACS-LAHAHQKG 85
H N L+ LT + P A + +L + + YT ALKAC+ L ++G
Sbjct: 78 HPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREG 137
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ HA K G L + +QN+L+ FY A ++F+ + DVV+WT ++S ++
Sbjct: 138 CQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRG 197
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
G EA+ + +DV PN TL SVL AC +LG+ + GKA+H R E N+I+ NA+
Sbjct: 198 GMFMEALGVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNAL 257
Query: 206 LDF 208
LD
Sbjct: 258 LDM 260
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 6/177 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
LL T+ A+ + +M P N T L AC + G +H +
Sbjct: 188 TALLSAFTRGGMFMEALGVLAEMDVTP---NEVTLASVLVACGNLGTARAGKAVHGWYFR 244
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + N+LL YV + + A ++F+ ++ D+V+WT +ISGL +C EA+++
Sbjct: 245 REKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEV 304
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + VKP+ L +VLSAC+SLG+ + G+ +H + R E ++ + +V+D
Sbjct: 305 FNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDM 361
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
++ L Q P A+ ++N M + + L AC+ A + G +H ++ +
Sbjct: 286 TVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIER 345
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + S++ YV + +A IF + +V +W +I+G + G +EA+D
Sbjct: 346 KGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDC 405
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F + PN T ++VL AC G + G+ +
Sbjct: 406 FDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQL 440
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 109/179 (60%), Gaps = 4/179 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+L++ S AI L+ +M+N S + YTF L AC+ + A G++IH +
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G+ D+F+QNSL+HFY ++ SA ++F+ + +VV+WT++I G ++ F K+A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 153 DMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D+F + +V PN+ T+V V+SAC+ L + G+ ++A + E N ++ +A++D
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 35/195 (17%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH---------L 98
+ A+ ++N M++ + + A+ +CS G H +V++ G L
Sbjct: 319 REALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNAL 378
Query: 99 HDIFIQ----------------------NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
D++++ NS++ YV ++ +A + F ++ ++V+W
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWN 438
Query: 137 TIISGLSKCGFHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLR 192
TIISGL + +EAI++FC + + N T++S+ SAC LG+ L K I+ + +
Sbjct: 439 TIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEK 498
Query: 193 NLNENNIILDNAVLD 207
N + ++ L ++D
Sbjct: 499 NGIQLDVRLGTTLVD 513
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQK 84
+P+ +I+ NT++ L Q S + AI ++ M + + + T AC A
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
I+ ++ K G D+ + +L+ + D SA IFNS+ DV WT I ++
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G + AI++F + +KP+ V L+ACS G + GK I L+
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLK 599
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 48 QNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQN 105
++A+ L+ +M+ + + N T + AC+ + G +++A + G ++D+ + +
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV-S 275
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKP 162
+L+ Y+ I A ++F+ ++ + S + G +EA+ +F V+P
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +++S +S+CS L + GK+ H + LRN E+ + NA++D
Sbjct: 336 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 380
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 109/179 (60%), Gaps = 4/179 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+L++ S AI L+ +M+N S + YTF L AC+ + A G++IH +
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G+ D+F+QNSL+HFY ++ SA ++F+ + +VV+WT++I G ++ F K+A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 153 DMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D+F + +V PN+ T+V V+SAC+ L + G+ ++A + E N ++ +A++D
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 35/195 (17%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH---------L 98
+ A+ ++N M++ + + A+ +CS G H +V++ G L
Sbjct: 319 REALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNAL 378
Query: 99 HDIFIQ----------------------NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
D++++ NS++ YV ++ +A + F ++ ++V+W
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWN 438
Query: 137 TIISGLSKCGFHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLR 192
TIISGL + +EAI++FC + + N T++S+ SAC LG+ L K I+ + +
Sbjct: 439 TIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEK 498
Query: 193 NLNENNIILDNAVLD 207
N + ++ L ++D
Sbjct: 499 NGIQLDVRLGTTLVD 513
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQK 84
+P+ +I+ NT++ L Q S + AI ++ M + + + T AC A
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
I+ ++ K G D+ + +L+ + D SA IFNS+ DV WT I ++
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G + AI++F + +KP+ V L+ACS G + GK I L+
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLK 599
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 48 QNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQN 105
++A+ L+ +M+ + + N T + AC+ + G +++A + G ++D+ + +
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV-S 275
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKP 162
+L+ Y+ I A ++F+ ++ + S + G +EA+ +F V+P
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +++S +S+CS L + GK+ H + LRN E+ + NA++D
Sbjct: 336 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 380
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 6/183 (3%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKML-----NCPSSYNHYTFTQALKACS-LAHAHQKG 85
H N L+ LT + P A + +L + + YT ALKAC+ L ++G
Sbjct: 78 HPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREG 137
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ HA K G L + +QN+L+ FY A ++F+ + DVV+WT ++S ++
Sbjct: 138 CQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRG 197
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
G EA+ + +DV PN TL SVL AC +LG+ + GKA+H R E N+I+ NA+
Sbjct: 198 GMFMEALGVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNAL 257
Query: 206 LDF 208
LD
Sbjct: 258 LDM 260
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 6/177 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
LL T+ A+ + +M P N T L AC + G +H +
Sbjct: 188 TALLSAFTRGGMFMEALGVLAEMDVTP---NEVTLASVLVACGNLGTARAGKAVHGWYFR 244
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + N+LL YV + + A ++F+ ++ D+V+WT +ISGL +C EA+++
Sbjct: 245 REKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEV 304
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + VKP+ L +VLSAC+SLG+ + G+ +H + R E ++ + +V+D
Sbjct: 305 FNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDM 361
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
++ L Q P A+ ++N M + + L AC+ A + G +H ++ +
Sbjct: 286 TVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIER 345
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + S++ YV + +A IF + +V +W +I+G + G +EA+D
Sbjct: 346 KGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDC 405
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F + PN T ++VL AC G + G+ +
Sbjct: 406 FDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQL 440
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 95/173 (54%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL P+ I +Y ++ S + +TF KAC ++G +IH V K
Sbjct: 75 NTLLSSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTK 134
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI++QNSL+HFY + +A ++F+ + DVV+WT II+G ++ G +KEA+D
Sbjct: 135 MGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDT 194
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F +DV+PN T V L + +G LGK IH L+ + ++ NA++D
Sbjct: 195 FSKMDVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALID 247
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
T++ + A+ ++KM P N T+ AL + G IH ++K L
Sbjct: 182 FTRTGLYKEALDTFSKMDVEP---NLATYVCALVSSGRVGCLSLGKGIHGLILKRASLIS 238
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ N+L+ YV + + A +F + D V+W ++ISGL C EAI++F +
Sbjct: 239 LETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQT 298
Query: 160 ---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+KP+ + L SVLSAC+SLG+ G+ +H + L + + + A++D
Sbjct: 299 SSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVD 349
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 5/166 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ L AI L++ M + + T L AC+ A G +H +V+
Sbjct: 274 NSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVL 333
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D I +++ Y I +A +IFN + +V TW ++ GL+ G E++
Sbjct: 334 SAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALLGGLAIHGHGHESLR 393
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKA-IHAHSLRNLN 195
F + KPN T +++L+AC G G+ H R N
Sbjct: 394 YFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYN 439
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 94/173 (54%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL P+ I Y ++ S + +TF KAC ++G +IH V K
Sbjct: 75 NTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTK 134
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI++QNSL+HFY + +A ++F + DVV+WT II+G ++ G +KEA+D
Sbjct: 135 MGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDT 194
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F +DV+PN T V VL + +G LGK IH L+ + ++ NA++D
Sbjct: 195 FSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALID 247
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
T++ + A+ ++KM P N T+ L + G IH ++K L
Sbjct: 182 FTRTGLYKEALDTFSKMDVEP---NLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLIS 238
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ N+L+ YV + + A ++F + D V+W ++ISGL C KEAID+F +
Sbjct: 239 LETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQT 298
Query: 160 ---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+KP+ + L SVLSAC+SLG+ G+ +H + L + + + A++D
Sbjct: 299 SSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVD 349
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ L + AI L++ M + + T L AC+ A G +H +++
Sbjct: 274 NSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYIL 333
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D I +++ Y I +A +IFN + +V TW ++ GL+ G E++
Sbjct: 334 TAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLR 393
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
F + KPN T ++ L+AC G G+ + H +++ N
Sbjct: 394 YFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRR-YFHKMKSREYN 439
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 27/208 (12%)
Query: 27 KIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKG 85
K P N +++ Q P+NA+ L+ ML N S N TF LKACS A ++G
Sbjct: 86 KNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEG 145
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H V K+G D+F+QNSL+ Y + I A Q+FN + PDVV+W ++ISGL
Sbjct: 146 KQVHGLVFKHGLSEDLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDL 205
Query: 146 GFHKEAIDMF------------CGIDVKPNAN--------------TLVSVLSACSSLGS 179
GF +E MF C ID A T+VSVL+ACS LG+
Sbjct: 206 GFVEEGKQMFDRMSKRSLVTWNCLIDGYVKAGLLMEARELFDQMRFTMVSVLTACSYLGA 265
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ G+ + AH +N + N +L A+++
Sbjct: 266 LEQGEWMQAHIEKNGIDVNSVLGTALVE 293
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ A L+++M +T L ACS A ++G + AH+ K
Sbjct: 227 NCLIDGYVKAGLLMEARELFDQM--------RFTMVSVLTACSYLGALEQGEWMQAHIEK 278
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + +L+ + I A +F S+ DV W +II L+ G +EA +
Sbjct: 279 NGIDVNSVLGTALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAI 338
Query: 155 FCGIDVKPNANTL------VSVLSACSSLGSRKLGK 184
F + +NTL + +LS C LG GK
Sbjct: 339 FSDM---LRSNTLLDGIIFLGLLSVCRHLGLVDEGK 371
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 35/215 (16%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N +++ L+ S P ++ LY++ML C + +N YTF LKACS A Q+ +I
Sbjct: 73 PDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQI 132
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV--------------- 133
HAH+ K+G+ HDI+ NSL++ Y + AH +F+ + PD V
Sbjct: 133 HAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEM 192
Query: 134 -----------------TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 173
+WTT+ISG + G +KEA+ +F + +V P+ +L S LSA
Sbjct: 193 DMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSA 252
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
CS LG+ + GK IH+++ + + +L ++D
Sbjct: 253 CSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDM 287
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ + A+ L+++M N ++ + AL ACS A ++G IH++ K
Sbjct: 213 TMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKT 272
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D + L+ Y ++ A +F ++ V WT +ISG + G +EAI F
Sbjct: 273 RTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKF 332
Query: 156 C---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ VKPNA T +VL+ACS G + GK++ R+ N
Sbjct: 333 LEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYN 375
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI-FNSVVFPDVVTWTTIISGLSKC 145
+IHA ++K G L D + L F ++ AH + FN PD W +I GLS C
Sbjct: 29 QIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLS-C 87
Query: 146 G---------FHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+H+ M C NA T +L ACS+L + + IHAH
Sbjct: 88 SDQPDRSLLLYHR----MLC-CSAPHNAYTFPFLLKACSNLSAFQETTQIHAH 135
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 111/216 (51%), Gaps = 38/216 (17%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P P + N+L++ L+ S TP A+PLY+ ML +H T+ +KAC+ + GL +
Sbjct: 129 PPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLV 188
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN----------------------- 125
H HV+K G D +I +SL+H Y KD+ +A Q+FN
Sbjct: 189 HTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEM 248
Query: 126 --------SVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSAC 174
+V DV++W T+I+G + CG EA+ +F + VKP T+VS+LSAC
Sbjct: 249 GHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 308
Query: 175 SSLGSRKLGKAIHAHSLRNLN--ENNIILDNAVLDF 208
+ LG+ L K +H H+ N N E N I+ A++D
Sbjct: 309 AHLGA--LDKGLHLHTYINDNRIEVNSIVGTALVDM 342
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ P A+ L+++M T L AC+ A KGL +H ++
Sbjct: 267 NTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 326
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + +L+ Y I A Q+FN++ DV+ W TII+G++ G KEA +
Sbjct: 327 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQL 386
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
F + V+PN T V++LSACS G G+ +
Sbjct: 387 FKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 421
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 122/211 (57%), Gaps = 10/211 (4%)
Query: 5 GLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTP-QNAIPLYNKMLNCPSS 63
G +L P ++ +QI + P N++++ +QS TP + + L+ KM+
Sbjct: 30 GFCALSPYGDIDYARKLFSQIQR-PNIFSWNSMIRGCSQSQTPSKEPVILFRKMVR--RG 86
Query: 64 Y-NHYTFTQA--LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
Y N TFT A LKACS+ A ++G ++HA+V+K G F++ +L++FY +DI A
Sbjct: 87 YPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLA 146
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 177
++F+ + ++V W+T+ISG ++ G EA+ +F + V P+ T+VSV+SAC++
Sbjct: 147 SKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAAS 206
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ GK +HA+ + L E ++ L A+++
Sbjct: 207 GALDTGKWVHAYINKQLIETDLELSTALVNM 237
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ M + T + AC+ + A G +HA++ K D+ + +L+
Sbjct: 176 EALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALV 235
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
+ Y I A ++F+++ D W+++I GL+ G ++A++ F ++ VKPN
Sbjct: 236 NMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHV 295
Query: 166 TLVSVLSACSSLGSRKLGK 184
T + VLSAC+ G G+
Sbjct: 296 TFIGVLSACAHSGLVSEGR 314
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLE 87
P I N +++ + S TP AI +YNKM C + + YT+ KAC+ A +KG E
Sbjct: 67 PDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKE 126
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +++ G+ D F+Q+SLL+FY+ +I +A Q+F+ DVV W +I+G ++ G
Sbjct: 127 VHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGM 186
Query: 148 HKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
++ +F + +V+PN T++ ++ AC + KLG+AIH + ++++
Sbjct: 187 VLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDM 237
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 6/163 (3%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ + + N+L+ Q + I L +M + +T + L AC+ A
Sbjct: 268 EIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNL 327
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H K G + D+FI +L+ Y I +A ++F+ + +V TW I+SG +
Sbjct: 328 GNWVHRFAEKKG-IWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYAS 386
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G + AI++F + +P++ T ++VL AC+ G + GK
Sbjct: 387 HGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGK 429
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ + ++ ++ +M+ N T + AC + + G IH +++
Sbjct: 175 NALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMM 234
Query: 94 KYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K L + + ++ +L++ YV + A ++F+ + + V W ++I G + G E I
Sbjct: 235 KDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVI 294
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++ + ++KP+ T+ VLSAC+ +G+ LG +H
Sbjct: 295 ELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVH 332
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 27 KIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
++P NT++K +++ P + +M+ + ++ +F ALKAC G+
Sbjct: 113 ELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGM 172
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H+ + K G D+F+QN L+ YV + A Q+F+ DVVTWTT+I+G ++
Sbjct: 173 AVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNN 232
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ EAI +F + DVKPN T++++LSACS G ++GK +H H R ++ L N
Sbjct: 233 WLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLN 292
Query: 204 AVLD 207
A+LD
Sbjct: 293 AMLD 296
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 36/208 (17%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV--- 92
T++ +++ AI L+N ML+ N T L ACS + G +H H+
Sbjct: 223 TMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRK 282
Query: 93 ----------------IKYGHL------------HDIFIQNSLLHFYVTVKDIFSAHQIF 124
+K G L D+F SLL+ Y D+ SA ++F
Sbjct: 283 DITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLF 342
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG----IDVKPNANTLVSVLSACSSLGSR 180
+ + ++V+W +I+G S+ EA+++F + + P +TLV VLSA LG
Sbjct: 343 DEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCL 402
Query: 181 KLGKAIHAHSLRNLN-ENNIILDNAVLD 207
++G+ IH + + + + ++IL NAV+D
Sbjct: 403 EMGQEIHCNHVNKIGIQVSLILKNAVMD 430
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
++P+ +I+ N ++ +Q+S P A+ L++ M++ T L A +
Sbjct: 344 EMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLE 403
Query: 84 KGLEIHA-HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G EIH HV K G + ++N+++ Y I +A ++F+S+ ++V+W ++IS
Sbjct: 404 MGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAY 463
Query: 143 SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ G K+A+ +F G +KP+ T + VLSACS G G+A H S+ N
Sbjct: 464 ASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQA-HFESMEN 516
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+I AH+ G ++ IF + LL F DI AH IF+ P+ W T+I G K
Sbjct: 70 QIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCK 129
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
F + + ++ + V L AC + +G A+H+ + ++++ +
Sbjct: 130 ANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFV 189
Query: 202 DNAVL 206
N ++
Sbjct: 190 QNGLI 194
>gi|218189272|gb|EEC71699.1| hypothetical protein OsI_04200 [Oryza sativa Indica Group]
Length = 338
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 10/205 (4%)
Query: 9 LKPTLSF--KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L+P L F K +QI A P + N L++ L QS P +AI Y K ++
Sbjct: 11 LQPDLVFAHKVFDQIKA-----PTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDN 65
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
TF LKAC+ +A +G ++H H+ K G L DIF+ NSL+H Y ++ A +F+
Sbjct: 66 LTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDE 125
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+V DVV+W ++I G S+C K+ + +F + VK + T++ V+SAC+ LG +
Sbjct: 126 MVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA 185
Query: 184 KAIHAHSLRNLNENNIILDNAVLDF 208
+ + E ++ L N ++D+
Sbjct: 186 DYMVRYIEDYCIEVDVYLGNTLVDY 210
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ +I N+++ Y +DI SA +IF+ + D+++W+++ISG S+ +A+++F
Sbjct: 229 VRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQ 288
Query: 158 ID---VKPNANTLVSVLSACSSLGSRKLG 183
+ VKP+A + SV+S+C+ LG+ LG
Sbjct: 289 MQRAKVKPDAIVIASVVSSCAHLGALDLG 317
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 10/205 (4%)
Query: 9 LKPTLSF--KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L+P L F K +QI A P + N L++ L QS P +AI Y K ++
Sbjct: 33 LQPDLVFAHKVFDQIEA-----PTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDN 87
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
TF LKAC+ +A +G ++H H+ K G L DIF+ NSL+H Y ++ A +F+
Sbjct: 88 LTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDE 147
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+V DVV+W ++I G S+C K+ + +F + VK + T++ V+SAC+ LG +
Sbjct: 148 MVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA 207
Query: 184 KAIHAHSLRNLNENNIILDNAVLDF 208
+ + E ++ L N ++D+
Sbjct: 208 DYMVRYIEDYCIEVDVYLGNTLVDY 232
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ +I N+++ Y +DI SA +IF+ + D+++W+++ISG S+ +A+++F
Sbjct: 251 VRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQ 310
Query: 158 ID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ VKP+A + SV+S+C+ LG+ LGK +H + RN + + I++N+++D
Sbjct: 311 MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDM 364
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ +++ +++ +Q++ +A+ ++ +M + + +C+ A
Sbjct: 279 QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDL 338
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H +V + D ++NSL+ Y+ A Q+F + D ++W +II GL+
Sbjct: 339 GKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLAN 398
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
GF KE++++F + +PN T + VL AC++
Sbjct: 399 NGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACAN 433
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+HA+ I G + + + +L Y ++ D+ AH++F+ + P W +I GL++
Sbjct: 6 RLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQS 65
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+AI + G + P+ T +L AC+ + + G+ +H H
Sbjct: 66 DAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNH 112
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 90/174 (51%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ P AI +Y + + YTF LK+C+ + + H+ +K
Sbjct: 78 NLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVK 137
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI++QN+L+H Y D A ++F ++ DVV+WT +ISG K G EAI +
Sbjct: 138 TGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISL 197
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F ++V+PN T VS+L AC LG LGK IH + L +++ NAVLD
Sbjct: 198 FLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDM 251
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
AI L+ +M P N TF L AC G IH V K + ++ + N++L
Sbjct: 193 EAISLFLRMNVEP---NVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVL 249
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNAN 165
Y+ + A ++F+ + D+++WT++I GL +C +E++D+F + +P+
Sbjct: 250 DMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGV 309
Query: 166 TLVSVLSACSSLGSRKLGKAIHAH 189
L SVLSAC+SLG G+ +H +
Sbjct: 310 ILTSVLSACASLGLLDCGRWVHEY 333
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ I++ +++ L Q +P+ ++ L+++M + T L AC+
Sbjct: 267 EMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDC 326
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++ + D+ I +L+ Y I A +IFN + ++ TW I GL+
Sbjct: 327 GRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAI 386
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
G+ KEA+ F + +PN T ++V +AC
Sbjct: 387 NGYGKEALKQFEDLVESGTRPNEVTFLAVFTAC 419
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 34/214 (15%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P +I N +L+ S+ P+ A+ LY++ML +N YTF LKACS A +K ++
Sbjct: 74 PNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFLLKACSSLSAIEKAQQV 133
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC--- 145
HA +IK G D++ NSLLH Y I SA IF+ + PD V+W +II G KC
Sbjct: 134 HAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGET 193
Query: 146 ----------------------------GFHKEAIDMFCGID---VKPNANTLVSVLSAC 174
G KEA+D+F + +KP+ L +VLSAC
Sbjct: 194 ETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSAC 253
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG+ G+ IH + +N + + +L A+ D
Sbjct: 254 AHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDM 287
Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ L+ +M + T L AC+ A +G IH ++ K D
Sbjct: 220 QAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIKKNDVQIDPM 279
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ +L Y + A ++F V WT +I G + G +EA+
Sbjct: 280 LGCALTDMYAKCGSMQDALEVFKKTRKKSVSLWTALIHGFAIHGRGREAL 329
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 3/186 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + NTLL+ L QS P++AI Y K ++ TF LKAC+ A ++G
Sbjct: 900 IESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEG 959
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H HVIK G L DIF+ NSL++ Y + A +FN ++ DVV+W ++I G S+
Sbjct: 960 EQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQH 1019
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
KE + +F + +V+ + T+V V+SAC+ LG + + + N E ++ L
Sbjct: 1020 NRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLG 1079
Query: 203 NAVLDF 208
N ++D+
Sbjct: 1080 NTLIDY 1085
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VK 161
N+++ Y ++ SA +IF+ + D+++W+++I S+ +++++F + VK
Sbjct: 1111 NAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVK 1170
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+A + SVLSAC+ LG+ LGK IH + RN + + I++N+++D
Sbjct: 1171 PDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLID 1216
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP +++ +++ +Q+S +++ L+ +M + L AC+ A
Sbjct: 1132 QIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDL 1191
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH +V + D ++NSL+ + + A Q+F + D ++W +II GL+
Sbjct: 1192 GKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLAN 1251
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSS 176
GF EA+D+F + +PN T + VL AC++
Sbjct: 1252 NGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACAN 1286
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T++ A+ L M+ S + T + A S G ++ + K G + D
Sbjct: 587 TRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDA 646
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+ NSL+ Y + + ++ ++F+ ++ ++V+WT+IISG + G EA+++F +
Sbjct: 647 RVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR 706
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKA 185
+KPN T +SV++ACS G + G A
Sbjct: 707 AGIKPNRITFLSVINACSHGGLVEQGLA 734
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 37/213 (17%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P LK + P A+ L+ K + + + FT LKAC+ H+ G ++HA
Sbjct: 445 PAPWRAFLKAYSHGPFPLEALHLF-KHARQHLADDTFVFTFVLKACAGLGWHRAGAQLHA 503
Query: 91 HVIKYGHLHDIFIQNSLLHFYVT---------------VKDIFS---------------- 119
V++ G ++ +L++ YV VK++ S
Sbjct: 504 LVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEY 563
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID----MFCGIDVKPNANTLVSVLSACS 175
A +F+ + +VV+WT +I G ++ + EA+ M G + P+ T+++V+ A S
Sbjct: 564 ARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAG-GISPSEITVLAVIPAIS 622
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+LG +G+ ++ + + ++ + N+++D
Sbjct: 623 NLGGILMGEMLNGYCEKKGIMSDARVGNSLIDL 655
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 87 EIHAHVIKYGHLHDI-FIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
++HAH++ G LH+ + + ++ Y + D+ SAH++F + P W T++ GL++
Sbjct: 859 KLHAHLVVSG-LHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQ 917
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
K+AI + +KP+ T VL AC+ + K G+ +H H ++
Sbjct: 918 SDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIK 968
>gi|255555919|ref|XP_002518995.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
gi|223541982|gb|EEF43528.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
Length = 1203
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 12/197 (6%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
F+Q++Q P NT++K +NA+ LY +ML +++T+ +K
Sbjct: 949 FRQIDQ--------PGSFEYNTMIKGYVSDFKMENALLLYYEMLEKEVQSDNFTYPALIK 1000
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ A + ++IH H+ K G D+++QNSL++ Y I + +F + D+ +
Sbjct: 1001 ACAWLRAIDESMQIHGHIFKLGFEEDLYVQNSLINMYGKCGKIELSCDVFKQIEHKDIAS 1060
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W++II+ S G E + F + +P + LVSVLSACS LG+ LG+ +H
Sbjct: 1061 WSSIIAAHSSLGLWSECVQFFEEMIQDRSYRPEESLLVSVLSACSHLGALDLGRCLHGVL 1120
Query: 191 LRNLNENNIILDNAVLD 207
LRN +E N+ + +++D
Sbjct: 1121 LRNFSELNVTVQTSLID 1137
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 28 IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+P + ++L+ L ++ S PQ ++ Y +ML S ++YTF+ +K+ + A G
Sbjct: 78 IPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIG 137
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH HV G+ D ++Q +L+ FY + A ++F+ + VV W ++ISG +
Sbjct: 138 ETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQN 197
Query: 146 GFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
GF KEA+++F + VKP+++T VS+LSAC+ +G+ LG +H + RN + N++L
Sbjct: 198 GFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLG 257
Query: 203 NAVLD 207
A+++
Sbjct: 258 TALMN 262
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N+++ Q+ + A+ L+ M + + TF L AC+ A
Sbjct: 178 KMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGL 237
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++ + ++ + +L++ Y ++ A ++F+S+ ++V WT +ISG
Sbjct: 238 GFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGM 297
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAI 186
G +AI++F + +PN T V+VLSAC+ G G+ I
Sbjct: 298 HGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQI 342
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 10/205 (4%)
Query: 9 LKPTLSF--KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L+P L F K +QI A P + N L++ L QS P +AI Y K ++
Sbjct: 498 LQPDLVFAHKVFDQIEA-----PTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDN 552
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
TF LKAC+ +A +G ++H H+ K G L DIF+ NSL+H Y ++ A +F+
Sbjct: 553 LTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDE 612
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+V DVV+W ++I G S+C K+ + +F + VK + T++ V+SAC+ LG +
Sbjct: 613 MVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA 672
Query: 184 KAIHAHSLRNLNENNIILDNAVLDF 208
+ + E ++ L N ++D+
Sbjct: 673 DYMVRYIEDYCIEVDVYLGNTLVDY 697
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ +I N+++ Y +DI SA +IF+ + D+++W+++ISG S+ +A+++F
Sbjct: 716 VRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQ 775
Query: 158 ID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ VKP+A + SV+S+C+ LG+ LGK +H + RN + + I++N+++D
Sbjct: 776 MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLID 828
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 4/160 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T++ P A+ L+ +M+ S + T + A S G +H + K G + D+
Sbjct: 197 TRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDV 256
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+ NSL+ Y + I ++ ++F+ ++ ++V+WT+IISG + G +A+++F +
Sbjct: 257 RVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRR 316
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++PN T +SVL ACS G + G A + N N
Sbjct: 317 AGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNIN 356
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ +++ +++ +Q++ +A+ ++ +M + + +C+ A
Sbjct: 744 QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDL 803
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H +V + D ++NSL+ Y+ A Q+F + D ++W +II GL+
Sbjct: 804 GKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLAN 863
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
GF KE++++F + +PN T + VL AC++
Sbjct: 864 NGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACAN 898
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 106/233 (45%), Gaps = 43/233 (18%)
Query: 16 KQLNQIHAQII------KIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
+QL QIH+Q+I + P P + LLK + PQ+A+ L+ + ++ + Y F
Sbjct: 36 RQLLQIHSQLIAHQVFDRRPTP--WHALLKAYSHGPHPQDALQLF-RHARWHAADDTYAF 92
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
T ALKAC+ + +++H V++ G ++ +L++ Y+ + + F +
Sbjct: 93 TFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPV 152
Query: 130 PDVVTWTTIISGLSKCG--------FHK-----------------------EAIDMF--- 155
+ V+W +I+G + G F + EA+ +F
Sbjct: 153 KNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRM 212
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ P+ T+++V+ A S++G +G+A+H + + ++ + N+++D
Sbjct: 213 MAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDL 265
Score = 43.1 bits (100), Expect = 0.069, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+HA+ I G + + + +L Y ++ D+ AH++F+ + P W +I GL++
Sbjct: 472 LHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSD 531
Query: 147 FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+AI + G + P+ T +L AC+ + + G+ +H H + ++I + N
Sbjct: 532 APADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSN 591
Query: 204 AVL 206
+++
Sbjct: 592 SLI 594
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L + + QN++ ++++ML+ N ++T + ++ K +E+ A + +
Sbjct: 260 NSLIDLYAKIGSIQNSLRVFDEMLD---RRNLVSWTSIISGFAMHGLSVKAVELFADMRR 316
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGFHK 149
G + S+LH + F S+++ PDV + II L + G +
Sbjct: 317 AGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLR 376
Query: 150 EAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
EA + V+ NA ++L CS G ++G+
Sbjct: 377 EAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGE 411
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 116/202 (57%), Gaps = 16/202 (7%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFT 70
LSF ++ + Q +P I N +++ +++ + Q ++ L+++ML P+S + YTFT
Sbjct: 103 LSFARI--VFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFT 160
Query: 71 QALKACSLAHAHQKGL--EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
ACS H +G +H V+K G+ DIF+ NSL++ Y + A ++F+ +
Sbjct: 161 FVFTACS-RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219
Query: 129 FPDVVTWTTIISGLSKCG-FHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLG 183
DV+TWT+++ G + G F+ EA+ DM C +VKPN LVS+LSAC+ LG+ G
Sbjct: 220 QRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQG 279
Query: 184 KAIHAHSLRNLNENNIILDNAV 205
K IH + +++N I+L + +
Sbjct: 280 KWIHVY----IDKNRILLSSNI 297
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L CS + ++ + +H V+K G ++++ NS+++ + A ++FN +
Sbjct: 363 TLLGVLNGCSHSGLVEEEI-VHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQM 421
Query: 128 VFPDVVTWTTIISGLSKCGFHKEA-----IDMFCGIDVKPNANTLVSVLSACSSLGSRKL 182
DV +WT+++ G +K G A +M C V PN LV VLSAC+ LG+
Sbjct: 422 SERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQ 481
Query: 183 GKAIHAH 189
G IH +
Sbjct: 482 GNWIHLY 488
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 53 LYNKMLNCPSSY--------NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
YN+ L C + N L AC+ A +G IH ++ K L I
Sbjct: 239 FYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNIS 298
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
+L+ Y I A ++F+ + D++TWT++ISGLS G E + F + K
Sbjct: 299 TALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFK 358
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ TL+ VL+ CS G + + +H +++ E+N+ + N+V++
Sbjct: 359 PDDITLLGVLNGCSHSGLVE-EEIVHGMVVKSGFESNLYVGNSVIN 403
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA-CSLAHAH 82
+I ++ +P + + L ++ +++ P + PS H TF Q LK SL
Sbjct: 16 KIPRLQEPFYVQSPLVYISSNTSSAIWEPSGTSSFSLPS---HSTFVQLLKKRPSLTQIK 72
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISG 141
Q IHA V+ +G + + L+H Y+ +++ A +F+ P + W +I
Sbjct: 73 Q----IHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQA 128
Query: 142 LSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGS-RKLGKAIHAHSLRNLN 195
SK +E++ +F G + T V +ACS + R G+ +H +++
Sbjct: 129 YSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGY 188
Query: 196 ENNIILDNAVLD 207
E++I + N++++
Sbjct: 189 ESDIFVGNSLVN 200
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N L AC+ A +G IH ++ K G I +L+ Y I A ++F
Sbjct: 462 NEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVF 521
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI 152
N + DV+++T++ISGLS G K+A+
Sbjct: 522 NGICKRDVLSFTSMISGLSYHGLGKDAL 549
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 65/190 (34%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTP-QNAIPLYNKMLNCPSSY-NHYTFTQA--LKACSLAH 80
+I +P+I N++++ +QS TP + + L+ KM+ Y N TFT A LKACS+
Sbjct: 118 QIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVR--RGYPNPNTFTMAFVLKACSIVS 175
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
A ++G ++HA+V+K G F++ +L++FY +DI A ++F+ + ++V W+T+IS
Sbjct: 176 ALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMIS 235
Query: 141 GLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
G ++ G EA+ +F + V P+ T+VSV+SAC++ G+ GK +HA+ + L E
Sbjct: 236 GYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIET 295
Query: 198 NIILDNAVLD 207
++ L A+++
Sbjct: 296 DLELSTALVN 305
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ M + T + AC+ + A G +HA++ K D+ + +L++
Sbjct: 246 ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVN 305
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y I A ++F+++ D W+++I GL+ G ++A++ F ++ VKPN T
Sbjct: 306 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 365
Query: 167 LVSVLSACSSLG 178
+ VLSAC+ G
Sbjct: 366 FIGVLSACAHSG 377
Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF-HKEAIDMFCGIDVK----PNANTLVSV 170
DI A ++F+ + P++ +W ++I G S+ KE + +F + + PN T+ V
Sbjct: 108 DIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFV 167
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L ACS + + + G+ +HA+ L++ ++ ++ A+++F
Sbjct: 168 LKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNF 205
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 38/211 (18%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N +++ + S P+ ++ LY +ML C + +N YTF LKACS A ++ +I
Sbjct: 107 PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQI 166
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV--------------- 133
HA + K G+ +D++ NSL++ Y + AH +F+ + PD V
Sbjct: 167 HAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKM 226
Query: 134 ----------------TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
+WTT+ISG + G HKEA+ +F + DV+P+ +L + LSAC
Sbjct: 227 DIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSAC 286
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ LG+ + GK IH++ L + I +D+ +
Sbjct: 287 AQLGALEQGKWIHSY----LTKTRIRMDSVL 313
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ + A+ L+++M N ++ + AL AC+ A ++G IH+++ K
Sbjct: 246 TMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKT 305
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D + L+ Y D+ A ++F ++ V WT +ISG + G +EAI F
Sbjct: 306 RIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKF 365
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ +KPN T +VL+ACS G + GK I + R+ N
Sbjct: 366 MEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYN 408
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 36/213 (16%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKML-NCPS-SYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ ++SS P+ AI ++ ML + PS T+ KA + G ++
Sbjct: 89 PFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQL 148
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF- 147
H VIK G D FI+N++LH YVT + A +IF ++ DVV W ++I G +KCG
Sbjct: 149 HGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLI 208
Query: 148 ------------------------------HKEAIDMFCGI---DVKPNANTLVSVLSAC 174
K+A+DMF + DVKP+ T+VS+L+AC
Sbjct: 209 DQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNAC 268
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ LG+ + G+ IH + +RN E N I+ A++D
Sbjct: 269 AYLGASEQGRWIHEYIVRNRFELNSIVVTALID 301
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
++Q ++PQ + + N+++ ++ ++A+ ++ +M + +T L A
Sbjct: 208 IDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNA 267
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ A ++G IH ++++ + + +L+ Y I +F + W
Sbjct: 268 CAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCW 327
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
++I GL+ GF + A+D+F ++ ++P++ + + VL+AC+ G
Sbjct: 328 NSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGE 374
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFY-VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA +IK G + D + +L F + D+ A+ +F + + W TII G S+
Sbjct: 43 QIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRS 102
Query: 146 GFHKEA----IDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
F + A IDM C VKP T SV A LG + G+ +H ++ E++
Sbjct: 103 SFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSF 162
Query: 201 LDNAVL 206
+ N +L
Sbjct: 163 IRNTML 168
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 3/180 (1%)
Query: 32 HILNTLLKLL-TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
+I N +++ L T ++T + LY +ML S + YT LKACS +HA + L+IHA
Sbjct: 103 YIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHA 162
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
H IK G ++F++N+L+ FY I + ++F+ D+++WTT+I SK G+ E
Sbjct: 163 HSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSE 222
Query: 151 AIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIILDNAVLDF 208
AI F ++ + TLV VLSACS LG LGK I A+ +L + +++ L NA+LD
Sbjct: 223 AIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDM 282
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 100/181 (55%), Gaps = 12/181 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
TL++ ++ P AI + +M NC + + T L ACS G +I A++
Sbjct: 208 TTLIQAYSKMGYPSEAIAAFFRM-NCTA--DRMTLVVVLSACSQLGDFTLGKKILAYMDH 264
Query: 95 YGHL----HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
HL D+F+ N+LL Y+ A Q+F+ + ++V+W ++ISGL+ G KE
Sbjct: 265 --HLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKE 322
Query: 151 AIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
A+ MF + +KP++ TLV VL++C++LG +LGK +H++ +N + + + NA++D
Sbjct: 323 ALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVD 382
Query: 208 F 208
Sbjct: 383 M 383
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L + A+ ++ +M + T L +C+ + G +H+++ K
Sbjct: 308 NSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDK 367
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D ++ N+L+ Y I A +F ++ DV ++T +I G + G A+ +
Sbjct: 368 NHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAI 427
Query: 155 FCG---IDVKPNANTLVSVLSACSSLGSRKLGK 184
F + V+P+ TLV VLSACS G + G+
Sbjct: 428 FSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGR 460
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 5/160 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNC--PSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
N+++ +QS P+ AI L+ M + P N T+T L ACS A ++G E+H +
Sbjct: 27 NSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEALEQGKEVHRQM 86
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G D +NSL++ Y I A ++F+ + VV+WT IIS + G +EA+
Sbjct: 87 VDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREAL 146
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
D++ + V+PN T SVLSACSSLG+ + GKA+HA
Sbjct: 147 DLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQ 186
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 4/165 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ A+ LY KM + N TF L ACS A ++G +HA + G+ D+ + N+
Sbjct: 142 PREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANA 201
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT 166
L+ Y + SA ++F+ + +VV+WT +IS + +EAI ++ +DV PNA T
Sbjct: 202 LVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAIQLYKAMDVAPNAVT 261
Query: 167 LVSVLSACSSLGSRKLGKAIH---AHSLRNLNENNIILDNAVLDF 208
L SVLSAC+SLG+ + G+A+H A + L + +L NA+L+
Sbjct: 262 LASVLSACASLGNAEEGRAVHEKLASTTTGLATDE-VLQNALLNM 305
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY--GHLHDIFIQN 105
+ AI LY M P N T L AC+ ++G +H + G D +QN
Sbjct: 244 EEAIQLYKAMDVAP---NAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQN 300
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP-NA 164
+LL+ Y D +A +IF+++ D ++W+T+I+ ++ G EA++M ++++ A
Sbjct: 301 ALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGVQA 360
Query: 165 NTLV--SVLSACSSLG 178
++ + +VL+ACS G
Sbjct: 361 SSFIYGTVLTACSQAG 376
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSAC 174
+ ++F+ + DV+ W ++I S+ G +EAI++F + V+PNA T +VL+AC
Sbjct: 11 SREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAAC 70
Query: 175 SSLGSRKLGKAIH 187
S++ + + GK +H
Sbjct: 71 SAVEALEQGKEVH 83
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 112/196 (57%), Gaps = 5/196 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
++ H IPQP I+ N++ + ++S+ P AI L+ K LN + YTF LKA
Sbjct: 77 MDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKA 136
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C +A A Q+G ++H IK G + ++ +L++ Y D+ A ++F+ ++ P VV++
Sbjct: 137 CVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSY 196
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
II+G ++ EA+ +F + +KPN T++SVLS+C+ LG+ LGK IH + +
Sbjct: 197 NAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKK 256
Query: 193 NLNENNIILDNAVLDF 208
N + + ++ A++D
Sbjct: 257 NGLDKYVKVNTALIDM 272
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +SS P A+ L+ ++ N T L +C+L A G IH +V K
Sbjct: 197 NAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKK 256
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + +L+ Y + A +F S+ D W+ +I + G ++ + M
Sbjct: 257 NGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSM 316
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F V+P+ T + +L ACS G
Sbjct: 317 FEEMARAKVQPDEITFLGLLYACSHTG 343
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 36/213 (16%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ ++SS P+ AI ++ ML S T+ KA + + G ++
Sbjct: 89 PFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQL 148
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF- 147
H VIK G D FI+N++LH YVT + A ++F ++ DVV W +II GL+KCG
Sbjct: 149 HGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLI 208
Query: 148 ------------------------------HKEAIDMFCGI---DVKPNANTLVSVLSAC 174
K+A++MF + DVKP+ T+VS+L+AC
Sbjct: 209 DQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNAC 268
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ LG+ + G+ IH + +RN E N I+ A++D
Sbjct: 269 AYLGASEQGRWIHKYIVRNRFELNSIVITALID 301
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
++Q ++PQ + + N+++ ++ ++A+ ++ +M + +T L A
Sbjct: 208 IDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNA 267
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ A ++G IH ++++ + + +L+ Y ++F + W
Sbjct: 268 CAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCW 327
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
++I GL+ G + A+D+F ++ ++P++ + + VL+AC+ G
Sbjct: 328 NSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGE 374
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFY-VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA++IK G + D + +L F + D A+ +F + + W TII G S+
Sbjct: 43 QIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFVWNTIIRGFSRS 102
Query: 146 GFHKEAI----DMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
F + AI DM C VKP T SV A +SLG + G+ +H ++ E++
Sbjct: 103 SFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSF 162
Query: 201 LDNAVL 206
+ N +L
Sbjct: 163 IRNTML 168
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
F+Q++Q P NT+++ +NA+ LY +ML +++T+ K
Sbjct: 42 FRQIDQ--------PGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFK 93
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ + ++G++IH ++ K G D+F+QNSL++ Y I + +F + DV +
Sbjct: 94 ACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVAS 153
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W+ II+ + G E + +F + +P + LVSVLSAC+ LG+ LG+ H
Sbjct: 154 WSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTL 213
Query: 191 LRNLNENNIILDNAVLDF 208
LRN+ E N+I+ +++D
Sbjct: 214 LRNIREMNVIVQTSLIDM 231
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC+ A G H +++ ++ +Q SL+ YV I +F +V +
Sbjct: 194 LSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQ 253
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++++ +I+GL+ G EA+ +F + +KP+ + VLSAC+ G
Sbjct: 254 LSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAG 302
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 10/200 (5%)
Query: 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSSYNHYTFTQALK 74
+ +HA + H N L+ LT S P +A + +L P + YT LK
Sbjct: 56 DAVHALLRLRASAHPFNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLK 115
Query: 75 ACSLAHAHQ------KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
AC+ A +G ++HA K G L + ++N+L+ Y + A ++F+ +
Sbjct: 116 ACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMA 175
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
DVV+WT ++S + G EA+ + +DV PN TL VL AC LG+ + GKA+H
Sbjct: 176 SRDVVSWTALVSAFVRGGRFAEALVLVGQMDVVPNEGTLACVLVACGRLGAARAGKAVHG 235
Query: 189 HSLRNLNENNIILDNAVLDF 208
LR ++ +I+ NAVLD
Sbjct: 236 WYLRRESDLKLIVGNAVLDM 255
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 6/177 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
L+ + A+ L +M P N T L AC A + G +H ++
Sbjct: 183 TALVSAFVRGGRFAEALVLVGQMDVVP---NEGTLACVLVACGRLGAARAGKAVHGWYLR 239
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + N++L YV + + A ++F+ ++ DV++WT +ISGL +C +A+++
Sbjct: 240 RESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEV 299
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + VKP+ L +VLSAC+SLG+ + G+ +H + R E ++ + +++D
Sbjct: 300 FNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDM 356
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q P A+ ++N+M + + L AC+ A + G +H ++ + G D
Sbjct: 287 LVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWD 346
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI---DMFCG 157
+ + SL+ Y + ++ IF + ++ +W +I+G + G +EA+ D
Sbjct: 347 VHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVA 406
Query: 158 IDVKPNANTLVSVLSAC 174
+ PN + + VL AC
Sbjct: 407 SGLAPNEVSFIIVLGAC 423
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P N +++ T +PQ A+ + +ML +++ +TF LKACS ++G
Sbjct: 86 IDGPDSSAYNIMIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLRGRKEG 145
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA ++KYG + + N+L+H Y +I A +F+ + D+ W ++ SG K
Sbjct: 146 KQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYVKS 205
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G++++ + +F + V N TL+SVL+AC L +LG+ I + N + N+ L
Sbjct: 206 GYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMNLV 265
Query: 203 NAVLD 207
A++D
Sbjct: 266 TALVD 270
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++ +S ++ + L+ +M +N T L AC + G I +V
Sbjct: 196 NSMFSGYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRV 255
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + +L+ Y ++ A ++F+ + DVV W+ +ISG S+ +EA+D+
Sbjct: 256 NGLDRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDL 315
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + ++ PN T+VSVLS C++LG+ GK IH + R + L A++DF
Sbjct: 316 FNEMQMANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDF 372
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ Q A+ L+N+M N T L C+ A G IH ++ + G +
Sbjct: 304 SQARRCQEAVDLFNEMQMANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTV 363
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ +L+ FY + SA ++F + +V +WT +I GL+ G K A++ + +
Sbjct: 364 TLGTALVDFYGKCGLVDSAIEVFQLMPVKNVYSWTALIQGLANNGQGKRALEYYQLMRES 423
Query: 159 DVKPNANTLVSV 170
+V+PN L+ V
Sbjct: 424 NVEPNDVWLMKV 435
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 38/211 (18%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P I NT+L+ + S+ P+ A+ LY++ML+ +N YTF LKACS A ++
Sbjct: 70 ISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEET 129
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW---------- 135
+IHAH+IK G +++ NSLL Y +I SAH +FN + D+V+W
Sbjct: 130 QQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKF 189
Query: 136 ---------------------TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVL 171
TT+I G + G HKEA+ + + +KP++ TL L
Sbjct: 190 GNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSL 249
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
SAC+ LG+ + GK IH + + +N I +D
Sbjct: 250 SACAGLGALEQGKWIHTY----IEKNEIKID 276
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F L+ + +P+ ++++ T++ + + A+ L +ML + T +
Sbjct: 187 IKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLS 246
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+L AC+ A ++G IH ++ K D + L YV ++ A +F+ +
Sbjct: 247 CSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKK 306
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
V WT II GL+ G +EA+D F + + PN+ T ++L+ACS G + GK++
Sbjct: 307 CVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSL 365
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 70 TQAL-KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNS 126
TQAL + CS ++ ++IH ++K G + + ++LL Y ++ + A+ +F+S
Sbjct: 13 TQALLERCS---NMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDS 69
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ P+ V W T++ S + A+ ++ + V N+ T +L ACS+L + +
Sbjct: 70 ISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEET 129
Query: 184 KAIHAHSLRN 193
+ IHAH ++
Sbjct: 130 QQIHAHIIKR 139
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 108/187 (57%), Gaps = 6/187 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
+IP+P++ NTL++ S P + ++ +ML+ + N YTF +KA + +
Sbjct: 89 QIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLL 148
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IH V+K D+FI NSL+HFY ++ D+ SA+ +F+ +V D+V+W ++ISG
Sbjct: 149 AGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFV 208
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G +EA+ +F + + +PN T+V VLSAC+ + G+ + RN + N+I
Sbjct: 209 QGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLI 268
Query: 201 LDNAVLD 207
L NA+LD
Sbjct: 269 LSNAMLD 275
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ Q+ P+ A+ ++ ++ LN + N T L AC+ A G IH ++
Sbjct: 333 NALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIK 392
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + I SL+ Y + A ++F SV DV W+ +I+GL+ G + AID
Sbjct: 393 KQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAID 452
Query: 154 MFCGID---VKPNANTLVSVLSACSSLG 178
+F + VKPNA T ++L ACS G
Sbjct: 453 LFSKMQETKVKPNAVTFTNLLCACSHSG 480
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 37/213 (17%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
S L+ + KI + I+ N+++ Q +P+ A+ L+ +M + N T
Sbjct: 178 SLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVG 237
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L AC+ + G ++ + G ++ + N++L YV + A ++F+ + D
Sbjct: 238 VLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKD 297
Query: 132 VVTWTTIISGLSKCGFH-------------------------------KEAIDMFCGI-- 158
+V+WTT+I G +K G + KEA+ +F +
Sbjct: 298 IVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQL 357
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+ KPN TL S L+AC+ LG+ LG IH +
Sbjct: 358 NKNTKPNEVTLASTLAACAQLGAMDLGGWIHVY 390
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 81 AHQKGL-EIHAHVIKYGHLHD------IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
A++K L ++HAH+++ G D +F +L + + A ++F+ + P++
Sbjct: 41 ANKKHLKQLHAHMLRTGLFFDPPSATKLFTACAL----SSPSSLDYACKVFDQIPRPNLY 96
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
TW T+I + + + +F + PN+ T V+ A + + S G+AIH
Sbjct: 97 TWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGM 156
Query: 190 SLRNLNENNIILDNAVLDF 208
++ +++ + N+++ F
Sbjct: 157 VMKASFGSDLFISNSLIHF 175
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSST-PQNAIPLYNKMLNCPSSY---NHYT 68
F +N + +IP P+I N+L+K +Q T + I L+ K+ + Y N +T
Sbjct: 37 FGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTE--TGYPVPNSFT 94
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
LKAC++ A +GL++H+HV+K G +F+Q SL++FY ++I A ++F +
Sbjct: 95 LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKA 185
++V WT +ISG ++ G EA+++F + ++P+A TLVSV+SAC+ G+ +G
Sbjct: 155 VRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCW 214
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
+HA+ + ++ L A++D
Sbjct: 215 LHAYIEKYFVLTDLELSTALVD 236
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + T + AC++A A G +HA++ KY L D+ + +L+
Sbjct: 176 EAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALV 235
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y I A Q+F + D W+++I G + G ++AID F + +V P+
Sbjct: 236 DMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHV 295
Query: 166 TLVSVLSACSSLGSRKLGK 184
T ++VLSAC+ G G+
Sbjct: 296 TFLAVLSACAHGGLVSRGR 314
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKC-GFHKEAIDMF-----CGIDVKPNANTLVSVLSA 173
A +F + P++ +W ++I G S+ KE I +F G V PN+ TL VL A
Sbjct: 43 ARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPV-PNSFTLAFVLKA 101
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
C+ + + G +H+H L++ +++ + ++++F
Sbjct: 102 CAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNF 136
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSST-PQNAIPLYNKMLNCPSSY---NHYT 68
F +N + +IP P+I N+L+K +Q T + I L+ K+ + Y N +T
Sbjct: 37 FGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTE--TGYPVPNSFT 94
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
LKAC++ A +GL++H+HV+K G +F+Q SL++FY ++I A ++F +
Sbjct: 95 LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKA 185
++V WT +ISG ++ G EA+++F + ++P+A TLVSV+SAC+ G+ +G
Sbjct: 155 VRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYW 214
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
+HA+ + ++ L A++D
Sbjct: 215 LHAYIEKYFVLTDLELSTALVD 236
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + T + AC++A A G +HA++ KY L D+ + +L+
Sbjct: 176 EAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALV 235
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y I A Q+F + D W+++I G + G ++AID F + +V P+
Sbjct: 236 DMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHV 295
Query: 166 TLVSVLSACSSLGSRKLGK 184
T ++VLSAC+ G G+
Sbjct: 296 TFLAVLSACAHGGLVSRGR 314
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKC-GFHKEAIDMF-----CGIDVKPNANTLVSVLSA 173
A +F + P++ +W ++I G S+ KE I +F G V PN+ TL VL A
Sbjct: 43 ARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPV-PNSFTLAFVLKA 101
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
C+ + + G +H+H L++ +++ + ++++F
Sbjct: 102 CAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNF 136
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 41/221 (18%)
Query: 22 HAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H+ +IP P ++ NT+++ S TP+ A+ ++++ML+ + YTFT ALK+C
Sbjct: 62 HSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSF 121
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV---------------KDIFS----- 119
++G +IH HV+K G D+FIQN+L+H Y + +D+ S
Sbjct: 122 SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALL 181
Query: 120 ------------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ ++F +VV+W +I+G S G E + +F + VKP+
Sbjct: 182 SAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDN 241
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
TLVSVLSAC+ +G+ G+ +HA+ +++N I +D V
Sbjct: 242 CTLVSVLSACAHVGALSQGEWVHAY----IDKNGISIDGFV 278
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + + L+ M + ++ T L AC+ A +G +HA++ K
Sbjct: 210 NAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDK 269
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ +L+ Y I A ++FNS + D+ TW +IISGLS G + A+ +
Sbjct: 270 NGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQI 329
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKA-----IHAHSLR 192
F + V KPN T V VLSACS G G+ +H H ++
Sbjct: 330 FSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQ 375
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVV 128
A A S++ HQ HAH++K G +H F + L+ T + I AH IF+ +
Sbjct: 14 AEMATSISELHQA----HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP 69
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
P+ W TII + + A+ +F + V P+ T L +C S + G+
Sbjct: 70 NPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQ 129
Query: 186 IHAHSLRNLNENNIILDNAVL 206
IH H L+ +++ + N ++
Sbjct: 130 IHGHVLKTGLGDDLFIQNTLI 150
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 112/203 (55%), Gaps = 10/203 (4%)
Query: 9 LKPTLSF--KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L PT+ + K +Q+ + + + NTL++ + + A+ LY+ M ++
Sbjct: 74 LAPTMDYARKMFDQMPKRDV-----FLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDN 128
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
YTF +++C++ A ++G E+H +++K+G D+F+Q+SL+ Y + +F
Sbjct: 129 YTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGE 188
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+V ++V+WT +I+G + + KE + +F G +PNA TLVSVL AC+ L LG
Sbjct: 189 MVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG 248
Query: 184 KAIHAHSLRNLNENNIILDNAVL 206
K IH + ++ + ++ L NA++
Sbjct: 249 KLIHGYGIKLGVDPDVSLTNALI 271
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + ++ +M+ + N T L AC+ G IH + IK G D+ + N+L
Sbjct: 211 KEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNAL 270
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NA 164
+ Y ++ +A +F+ +V ++V+W +I+ + A+ +F + + +
Sbjct: 271 IALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDY 330
Query: 165 NTLVSVLSA 173
T+VSV+SA
Sbjct: 331 ITMVSVISA 339
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P L+TLLK L P+ + + ++Y+ +F L CS + IHA
Sbjct: 3 PKSLSTLLKGLA---------PIKRVLFDFRTNYHSRSFNYLLNCCSSLPDLSR---IHA 50
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
V+ G ++ + L+ + A ++F+ + DV W T+I G + G +
Sbjct: 51 LVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCE 110
Query: 150 EAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
EA+ ++ G + P+ T V+ +C+ L + + GK +H + +++ ++++ + ++++
Sbjct: 111 EALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLV 170
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 111 YVTVKDIFSAH---QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
Y+T+ + SA+ ++F + VV+WT++I + G ++A+ +F + VKPN+
Sbjct: 330 YITMVSVISAYLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNS 389
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T +V +AC G + G+ +R+
Sbjct: 390 FTFAAVFTACRHSGLVEEGRKHFESMMRD 418
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 112/203 (55%), Gaps = 10/203 (4%)
Query: 9 LKPTLSF--KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L PT+ + K +Q+ + + + NTL++ + + A+ LY+ M ++
Sbjct: 74 LAPTMDYARKMFDQMPKRDV-----FLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDN 128
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
YTF +++C++ A ++G E+H +++K+G D+F+Q+SL+ Y + +F
Sbjct: 129 YTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGE 188
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+V ++V+WT +I+G + + KE + +F G +PNA TLVSVL AC+ L LG
Sbjct: 189 MVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG 248
Query: 184 KAIHAHSLRNLNENNIILDNAVL 206
K IH + ++ + ++ L NA++
Sbjct: 249 KLIHGYGIKLGVDPDVSLTNALI 271
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + ++ +M+ + N T L AC+ G IH + IK G D+ + N+L
Sbjct: 211 KEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNAL 270
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NA 164
+ Y ++ +A +F+ +V ++V+W +I+ + A+ +F + + +
Sbjct: 271 IALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDY 330
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T+VSV+SAC+SLG+ G+ +H R E N+ + NA++D
Sbjct: 331 ITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALID 373
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q++ NA+ L+ +M +++ T + AC+ A G +H V +
Sbjct: 299 NAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKR 358
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ I N+L+ Y +I A ++F + VV+WT++I + G ++A+ +
Sbjct: 359 KGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKL 418
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + VKPN+ T +V +AC G + G+
Sbjct: 419 FSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGR 451
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P L+TLLK L P+ + + ++Y+ +F L CS + IHA
Sbjct: 3 PKSLSTLLKGLA---------PIKRVLFDFRTNYHSRSFNYLLNCCSSLPDLSR---IHA 50
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
V+ G ++ + L+ + A ++F+ + DV W T+I G + G +
Sbjct: 51 LVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCE 110
Query: 150 EAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
EA+ ++ G + P+ T V+ +C+ L + + GK +H + +++ ++++ + ++++
Sbjct: 111 EALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLV 170
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 5/160 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNC--PSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
N+++ +QS P+ AI L+ M + P N T+T L ACS ++G E+H +
Sbjct: 237 NSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQM 296
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G D +NSL++ Y I A ++F+ + VV+WT IIS + G +EA+
Sbjct: 297 VDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREAL 356
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
D++ + V+PN T SVLSACSSLG+ + GKA+HA
Sbjct: 357 DLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQ 396
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH HV+K G+ ++++ N L+ Y + A ++F+ + D ++W+ +I+G +
Sbjct: 86 GKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVR 145
Query: 145 CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKL--GKAIHAHSLRNLNENNIILD 202
G +EAI ++ + + P+ T +VL+ACSSLG R L GK IHAH R + ++ +D
Sbjct: 146 HGLAREAIKLYKAMAIDPDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVD 205
Query: 203 NAVL 206
+A++
Sbjct: 206 SALV 209
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 10/147 (6%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSL--AHAHQKGLEIHAHVIKYGHLHDIFIQN 105
+ AI LY M P + +TF+ L ACS A + G EIHAH+ + D+F+ +
Sbjct: 150 REAIKLYKAMAIDP---DGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDS 206
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-----V 160
+L+ + + + ++F+ + DV+ W ++I S+ G +EAI++F + V
Sbjct: 207 ALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPV 266
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIH 187
+PNA T +VL+ACS++ + GK +H
Sbjct: 267 EPNAITYTTVLAACSAVEDLEQGKEVH 293
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ A+ LY KM + N TF L ACS A ++G +HA + G+ D+ + N+
Sbjct: 352 PREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANA 411
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP-NAN 165
L+ Y + SA ++F+ + +VV+WT +IS + +EAI ++ +D++ A+
Sbjct: 412 LVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQAS 471
Query: 166 TLV--SVLSACSSLG 178
+ + +VL+ACS G
Sbjct: 472 SFIYGTVLTACSQAG 486
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 38/220 (17%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLY-NKMLNCPSSY-NHYTFTQALKA-CSLAHAH 82
I+ P + NT+++ +QSSTP NAI L+ + M P++ T+ KA L AH
Sbjct: 55 IRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAH 114
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+ G ++H VIK G +D FIQN++L+ YV + A +IF+ DVVTW T+I GL
Sbjct: 115 E-GAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGL 173
Query: 143 SKCG--------FHK-----------------------EAIDMFCGID---VKPNANTLV 168
+KCG F K EA+++F + +KP+ T+V
Sbjct: 174 AKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMV 233
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S+L+AC+ LG+ + G+ IH + ++N N I+ A++D
Sbjct: 234 SLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDM 273
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+++M + +T L AC+ A ++G IH +++K + + +++
Sbjct: 212 EAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAII 271
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y I A Q+F S + W ++I GL+ G EA+ +F ++ +KP+
Sbjct: 272 DMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHV 331
Query: 166 TLVSVLSACSSLG 178
+ + VL+AC+ G
Sbjct: 332 SFIGVLTACNHAG 344
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDV 132
K C+ QK IHA +IK G D + +L F + DI A+ +F + P++
Sbjct: 4 KNCTSMKDLQK---IHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNL 60
Query: 133 VTWTTIISGLSKCGFHKEAID-----MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
W TII G S+ AI MF +P T SV A + LG G +H
Sbjct: 61 FVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLH 120
Query: 188 AHSLRNLNENNIILDNAVLDF 208
++ EN+ + N +L+
Sbjct: 121 GRVIKLGLENDQFIQNTILNM 141
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 9 LKPTLSF------KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNC 60
+ P +SF L+ H +IP P + N +++ + S TP NA+ LY KML+
Sbjct: 13 MTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSS 72
Query: 61 --PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
P + +TF LK+C+ + GL++H HV K G ++F+ N+LL Y D
Sbjct: 73 SPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDAR 132
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACS 175
+A ++F+ D V++ T+I+GL + G ++ +F G V+P+ T V++LSACS
Sbjct: 133 NACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACS 192
Query: 176 SLGSRKLGKAIHAHSLRNLN--ENNIILDNAVLD 207
L R +G+ +H R L N +L NA++D
Sbjct: 193 LLEDRGIGRVVHGLVYRKLGCFGENELLVNALVD 226
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 37/190 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L ++ ++ ++ +M + YTF L ACSL G +H V +
Sbjct: 150 NTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYR 209
Query: 95 ----YGH-------LHDIFIQ-----------------------NSLLHFYVTVKDIFSA 120
+G L D++ + SL+ Y ++ A
Sbjct: 210 KLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVA 269
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 177
++F+ + DVV+WT +ISG G +EA+++F ++ ++P+ +V+ LSAC+ L
Sbjct: 270 RRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARL 329
Query: 178 GSRKLGKAIH 187
G+ +LG+ IH
Sbjct: 330 GALELGRRIH 339
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 105/179 (58%), Gaps = 4/179 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+L++ S + AI L+ +M+N S + YTF L C+ + G++IH +
Sbjct: 100 MYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLI 159
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK + D+F+QNSL+HFY ++ A ++F+ + +VV+WT++I G ++ F K+A+
Sbjct: 160 IKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAV 219
Query: 153 DMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D+F + DV PN+ T+V V+SAC+ L + G+ ++ + E N ++ +A++D
Sbjct: 220 DLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVD 278
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 164
NS++ Y+ ++ +A + FN++ ++V+W TIIS L + ++EAI++F + +
Sbjct: 406 NSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECV 465
Query: 165 N----TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
N T++S+ SAC LG+ L K I+ + +N + ++ L ++D
Sbjct: 466 NVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVD 512
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 48 QNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQN 105
++A+ L+ +M+ N T + AC+ + G +++ + G ++D+ I +
Sbjct: 216 KDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMI-S 274
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI---DMFCGIDVKP 162
+L+ Y+ I A ++F+ ++ + S + G KEA+ ++ ++P
Sbjct: 275 ALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRP 334
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +++S +S+CS L + GK+ H + LRN E+ + NA++D
Sbjct: 335 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 379
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQK 84
+P+ +I+ NT++ L Q + + AI +++ M + + + T AC A
Sbjct: 428 MPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDL 487
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
I+ ++ K D+ + +L+ + D SA IFNS+ DV WT I ++
Sbjct: 488 AKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 547
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
G + AI++F + +KP+ + L+AC G + GK I
Sbjct: 548 AGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEI 592
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
K L+ S+++++ +I PH N +++ + Q A+ LYN M+ S
Sbjct: 69 KLLRLCFSYQKVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSP 128
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TF +KAC A KG E+H IK G D F+ N+L+ Y D+ A ++F
Sbjct: 129 DKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLF 188
Query: 125 NSVVFPDVVTWTTIISGLSKCG-------------------------------FHKEAID 153
+ + VV+WTT ++GL CG +EA +
Sbjct: 189 DKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFE 248
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + +V+PN TLV +L AC+ LGS +LG+ IH ++L N + + L A++D
Sbjct: 249 LFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALID 305
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
+L+ A ++P ++++ ++ ++ PQ A L+ +M N +T L+
Sbjct: 211 ELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLR 270
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ + + G IH + ++ G +F+ +L+ Y I A ++F + + T
Sbjct: 271 ACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLAT 330
Query: 135 WTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
W ++I+ L GF KEA+ +F ++ V+P+A T V VL AC + + + G
Sbjct: 331 WNSMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAG 382
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + + A+ L+++ML N YTF AL+AC + + G++IHA ++K
Sbjct: 129 NSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILK 188
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+++ N+L+ YV + A IF ++ D+VTW ++++G + G + EA++
Sbjct: 189 SGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEF 248
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + D+KP+ +++S++ A LG GK IHA++++N ++NI++ N ++D
Sbjct: 249 FYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLID 304
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ +Y +M + S++ YTF LKAC + G EIH IKYG +F+ NSL+
Sbjct: 42 ALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVA 101
Query: 110 FYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y DI A ++F+ + V DVV+W +IIS S G EA+ +F + V N
Sbjct: 102 LYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTY 161
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T + L AC KLG IHA L++ ++ + NA++
Sbjct: 162 TFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALV 202
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC + K EIH + I+ G L D +QN+++ Y I A +IF S+ DV
Sbjct: 369 LLACRGLNCLGKIKEIHGYTIR-GGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDV 427
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT++IS G +A+++F + ++P+ TLVS+LSA SL + K GK IH
Sbjct: 428 VSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGF 487
Query: 190 SLR 192
+R
Sbjct: 488 IIR 490
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA-CSLAHAHQKGLEIHAHVIK 94
+++ + A+ +++ M ++ T L A CSL+ +KG EIH +I+
Sbjct: 432 SMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLS-TLKKGKEIHGFIIR 490
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + I N+L+ Y + A++IF +++ WT +IS G+ + A+++
Sbjct: 491 KGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVEL 550
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
F + + P+ T +++L ACS G GK+
Sbjct: 551 FMRMKDEKIIPDHITFLALLYACSHSGLVNEGKS 584
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L Q+ A+ + + N + + + A G EIHA+ IK
Sbjct: 230 NSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK 289
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +I + N+L+ Y + + F+ + D+++WTT +G ++ + +A+++
Sbjct: 290 NGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALEL 349
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G+DV +A + S+L AC L K IH +++R ++ +L N ++D
Sbjct: 350 LRQLQMEGMDV--DATMIGSILLACRGLNCLGKIKEIHGYTIRG-GLSDPVLQNTIID 404
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 7/210 (3%)
Query: 5 GLKSLKPTLS---FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP 61
GL+ LK L+ F++ Q+ I + P P +TL+ T P AI LY +
Sbjct: 69 GLRLLKAALNVGDFRRAQQLFDNIPQ-PDPTTCSTLISAFTTRGLPNEAIRLYASLRARG 127
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
++ F KAC + + E+H I+ G + D F+ N+L+H Y K + A
Sbjct: 128 IKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGAR 187
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++F+ +V DVV+WT++ S CG + + +FC + VKPN+ TL S+L ACS L
Sbjct: 188 RVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELK 247
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
K G+AIH ++R+ N+ + +A++
Sbjct: 248 DLKSGRAIHGFAVRHGMIENVFVCSALVSL 277
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ + KM N N T + L ACS+ + + G E+H +V +
Sbjct: 338 NAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFR 397
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + D+ +L++ Y D+ + +F+ + DVV W T+I + G +E + +
Sbjct: 398 HWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLL 457
Query: 155 FCGI---DVKPNANTLVSVLSACS 175
F + +KPN+ T VLS CS
Sbjct: 458 FESMLQSGIKPNSVTFTGVLSGCS 481
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 38/167 (22%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + L ACS + G IH +++G + ++F+ ++L+ Y + A +F
Sbjct: 232 NSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVF 291
Query: 125 NSVVFPDVV-----------------------------------TWTTIISGLSKCGFHK 149
+ + DVV TW +I G + G +
Sbjct: 292 DLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTE 351
Query: 150 EAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+A++M + KPN T+ S L ACS L S ++GK +H + R+
Sbjct: 352 KAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRH 398
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 103/186 (55%), Gaps = 5/186 (2%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P + NTL++ + S PQ A+ L+ +L N +T LKAC+ A +
Sbjct: 73 RIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEH 132
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
L H V+K G + IF+ N+LLHF+ + + + + F + +VV+W T+I G ++
Sbjct: 133 ALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQ 192
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G EA +F + + + TLVS+L ACSS G+ ++G+ +H H L + + + IL
Sbjct: 193 AGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRIL 252
Query: 202 DNAVLD 207
NA+LD
Sbjct: 253 GNALLD 258
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ A L+ +M + + +T L ACS + G +H H++
Sbjct: 184 NTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLV 243
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---------- 144
G D + N+LL Y D++ AH+ F+ + +VVTWT+++ +K
Sbjct: 244 SGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDW 303
Query: 145 ---------------------CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSR 180
CG E +D++ + + P+ TL VLSAC G
Sbjct: 304 FEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDL 363
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
GK IH + N N+ + L N++LD
Sbjct: 364 ASGKMIHCYVRDNFNDPGVTLLNSLLD 390
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +I+ N ++ Q + LYN+M + + + +T L AC
Sbjct: 306 QMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLAS 365
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH +V + + + NSLL Y + +A +F + +V++W II L+
Sbjct: 366 GKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAM 425
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G +E + F + P+ T V +LSACS G + G+
Sbjct: 426 HGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGE 468
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 71 QALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK------DIFSAHQI 123
+ L+ C S+ H Q IHAH++ +G + + L+ Y T+ + A ++
Sbjct: 15 ELLRQCRSIQHLDQ----IHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRL 70
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + PD + T++ S +EA+ + G+ + PN TL VL AC+++ +
Sbjct: 71 FDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAV 130
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ A H ++ I + NA+L F
Sbjct: 131 EHALAAHGVVVKLGFVQQIFVANALLHF 158
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N ++K ++ +AI Y +M+ ++YTFT +KAC+ A + G I
Sbjct: 80 PDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGRPI 139
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+HV+ G+ D F+Q +L+ FY D+ A ++F+ + ++ W ++ISG + GF
Sbjct: 140 HSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNGFS 199
Query: 149 KEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
KEA+ +F + V+ ++ T VSVLSACS G+ LG +H + + N + N++L ++
Sbjct: 200 KEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSL 259
Query: 206 LD 207
++
Sbjct: 260 IN 261
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ I+ N+++ Q+ + A+ L+ +M ++ TF L ACS + A
Sbjct: 177 RMPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDL 236
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H +++ ++ + SL++ Y ++ A ++F+ + +VV WT +ISG
Sbjct: 237 GCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGM 296
Query: 145 CGFHKEAIDMF 155
G+ +EAI++F
Sbjct: 297 HGYGREAIELF 307
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++HAH+I G + LL T I Q+F S+ PD + II SK G
Sbjct: 37 QVHAHLIVSGSYRSRALLTKLLTLACTAGSILYTRQLFFSITNPDSFLFNAIIKASSKFG 96
Query: 147 FHKEAIDMFCGI--DVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
F +AI + + D P +N T +V+ AC+ + + ++G+ IH+H L +++ +
Sbjct: 97 FSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQA 156
Query: 204 AVLDF 208
A++ F
Sbjct: 157 ALIAF 161
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 34/217 (15%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P I NT+L+ SS P +A+ LY M++ N YTF LK+C+ + A ++G
Sbjct: 26 IQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEG 85
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYV-------------------------------TV 114
+IH HV+K G+ D+++ SL+ Y +
Sbjct: 86 QQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASS 145
Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVL 171
+I SA ++F+ + DVV+W +ISG ++ G +KEA+++F +V+P+ T+V+VL
Sbjct: 146 GNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVL 205
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SAC+ S +LG+ +H+ + +N+ + NA++D
Sbjct: 206 SACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDL 242
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + + A+ L+ +M+ + T L AC+ + + + G ++H+ +
Sbjct: 167 NAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDD 226
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y + +A +F + DVV+W T+I G + +KEA+ +
Sbjct: 227 HGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLL 286
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
F + PN T+VS+L AC+ LG+ +G+ IH + + L +
Sbjct: 287 FQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKD 331
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A G IH ++ K
Sbjct: 268 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDK 327
Query: 95 YGHLHDIF----IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
L D+ ++ SL+ Y DI +AHQ+FNS++ + +W +I G + G
Sbjct: 328 --KLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANA 385
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+F + ++P+ T V +LSACS G LG+ I
Sbjct: 386 GFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHI 424
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +AI LY M++ N YTF LK+C+ +
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSK 120
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYV---TVKD------------------------ 116
+G +IH HV+K G+ D+++ SL+ YV KD
Sbjct: 121 EGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYA 180
Query: 117 ----IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
I SA ++F+ + DVV+W IISG + G +KEA+D+F + +VKP+ +T+V+
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVT 240
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ GS +LG+ +H+ + +N+ + NA++D
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDL 279
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++ N ++ + + A+ L+ +M+ + T + AC+ + + Q
Sbjct: 194 EIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQL 253
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H+ + +G ++ I N+L+ Y ++ +A +F + DV++W T+I G +
Sbjct: 254 GRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTH 313
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+KEA+ +F + PN T++S+L AC+ LG+ G+ IH +
Sbjct: 314 LNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVY 361
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ T + + A+ L+ +ML + N T L AC+ A G IH ++ K
Sbjct: 305 NTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDK 364
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +AHQ+FNS+ + +I G + G A
Sbjct: 365 RIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAF 424
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F + ++P+ T V +LSACS G LG+ I R++ +N
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRI----FRSMTQN 468
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 11/204 (5%)
Query: 11 PTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHY 67
P+L + Q Q+ QI P P++ NTL++ SS P ++ ++ +ML P + +
Sbjct: 83 PSLDYAQ--QVFDQI---PHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF +KA S G H VIK D+FI NSL+HFY ++ +++F ++
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
DVV+W ++I+ + G +EA+++F ++ VKPN T+V VLSAC+ + G+
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
+H++ RN ++ L NA+LD
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDM 281
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 37/220 (16%)
Query: 26 IKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ IP+ ++ N+++ Q P+ A+ L+ +M N T L AC+ +
Sbjct: 195 VNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFE 254
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H+++ + + + N++L Y + A ++F+ + D+V+WTT++ G +
Sbjct: 255 FGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314
Query: 144 K-------------------------------CGFHKEAIDMFCGIDV----KPNANTLV 168
K CG KEA+++F + + KP+ TLV
Sbjct: 315 KIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLV 374
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S LSAC+ LG+ LG IH + + + N L +++D
Sbjct: 375 STLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDM 414
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ Q P+ A+ L++++ L+ + + T L AC+ A G IH ++
Sbjct: 338 NALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIK 397
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + + SL+ Y D+ A +F+SV DV W+ +I+GL+ G K+AI
Sbjct: 398 KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIA 457
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
+F + VKPNA T ++L ACS +G + G+
Sbjct: 458 LFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR 491
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 103/176 (58%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + + A+ L+ +M N YT AL+AC + + G+EIHA ++K
Sbjct: 81 NSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILK 140
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D+++ N+L+ +V + A +IF+ + D +TW ++I+G ++ G + EA+
Sbjct: 141 SNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQF 200
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
FCG+ ++KP+ +L+S+L+A LG GK IHA++++N ++N+ + N ++D
Sbjct: 201 FCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLID 256
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 56 KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
++L P ++ +TF LKAC + +G EIH +IK G+ +F+ NSL+ Y
Sbjct: 2 RVLGVP--FDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCN 59
Query: 116 DIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVL 171
DI A ++F+ + DVV+W +IIS S G EA+ +F + V N TLV+ L
Sbjct: 60 DILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAAL 119
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
AC +KLG IHA L++ ++ + NA++
Sbjct: 120 QACEDSSFKKLGMEIHAAILKSNQVLDVYVANALV 154
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q++ A+ L K+ + L ACS E+H + +K
Sbjct: 284 TVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKR 343
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G L D+ +QN ++ Y +I A ++F S+ DVV+WT++IS G EA+ +F
Sbjct: 344 G-LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVF 402
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ V+P++ TLVS+LSA +SL + GK IH R
Sbjct: 403 YLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFR 442
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ TQ+ A+ + + + + + L A G EIHA+ +K
Sbjct: 182 NSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMK 241
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ I N+L+ Y + A +F+ ++ D+++WTT+I+ ++ H EA+ +
Sbjct: 242 NWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKL 301
Query: 155 FCGIDVKP-NANTLV--SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ K + +T++ S L ACS L K +H ++L+ +++++ N ++D
Sbjct: 302 LRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKR-GLSDLMMQNMIID 356
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG EIH + + G + + NSL+ Y + +A+++F +V WTT+I+
Sbjct: 432 KGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYG 491
Query: 144 KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAI 186
G K A+++F ++ + P+ T +++L ACS G GK +
Sbjct: 492 MHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRL 537
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+LN+L++ + + + AI LY +ML + NHYTF L C+ A +G+++H V
Sbjct: 98 MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G D+FIQN L+HFY + H++F + +VV+WT++I G ++ KEA+
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + ++P++ T+V V+SAC+ L +G+ + A+ + N ++ NA++D
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVD 275
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ + + NT++ L Q S ++AI L+ +M + T AC A +
Sbjct: 424 QIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPEL 483
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H ++ K G D+ + +L+ + D SA Q+FN + DV WT I ++
Sbjct: 484 AKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAM 543
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
G + A +F + VKP+ V VL+ACS G + G +H SL
Sbjct: 544 EGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG--LHIFSL 591
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVK 161
NSL ++ D+ SA ++FN + + V W T+ISGL + ++AI++F G +K
Sbjct: 403 NSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIK 462
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ T++ + SAC LG+ +L K +H + +N ++ L+ A++D
Sbjct: 463 ADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVD 508
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ A+ L+ +M+ + T + AC+ G + A++ + G + + N+
Sbjct: 213 PKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNA 272
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA---IDMFCGIDVKPN 163
L+ Y+ I +A ++F+ V ++V + TI+S ++ G +EA +D +P+
Sbjct: 273 LVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPD 332
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T++S +SA + L GK H + +RN E + N ++D
Sbjct: 333 RVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIID 376
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P + N+L++ S PQ A+PL M+ N +T LKAC+ A +
Sbjct: 69 RIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEH 128
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ H V+K G + +F+ N+LLH Y + + + + F+ +V +VV+W ++I+G ++
Sbjct: 129 VMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQ 188
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA +F G+ + + TLVS+L ACS+ G+ + GK +H+H L ++IL
Sbjct: 189 AGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLIL 248
Query: 202 DNAVLD 207
NA++D
Sbjct: 249 ANALVD 254
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + A L+ M + +T L ACS + G +H+H++
Sbjct: 180 NSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLV 239
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---------- 144
G D+ + N+L+ Y D+ AH F+ + F + V+WT+++ L+K
Sbjct: 240 RGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDW 299
Query: 145 -----------------C----GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
C G EA+D++ + + P+ TL +VLSAC LG
Sbjct: 300 FEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDL 359
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
GK IH N + + L N++LD
Sbjct: 360 ASGKMIHDCIRDNFHNPGVALFNSLLD 386
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ I+ N ++ Q A+ LYN+M + + +T L AC
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + H + + NSLL Y + +A +F+ + +V++W II L+
Sbjct: 362 GKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAM 421
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G ++A+ F + P+ T V++LSAC+ G + G+
Sbjct: 422 HGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQ 464
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P + N+L++ S PQ A+PL M+ N +T LKAC+ A +
Sbjct: 69 RIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEH 128
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ H V+K G + +F+ N+LLH Y + + + + F+ +V +VV+W ++I+G ++
Sbjct: 129 VMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQ 188
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA +F G+ + + TLVS+L ACS+ G+ + GK +H+H L ++IL
Sbjct: 189 AGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLIL 248
Query: 202 DNAVLD 207
NA++D
Sbjct: 249 ANALVD 254
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + A L+ M + +T L ACS + G +H+H++
Sbjct: 180 NSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLV 239
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---------- 144
G D+ + N+L+ Y D+ AH F+ + F + V+WT+++ L+K
Sbjct: 240 RGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDW 299
Query: 145 -----------------C----GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
C G EA+D++ + + P+ TL +VLSAC LG
Sbjct: 300 FEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDL 359
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
GK IH N + + L N++LD
Sbjct: 360 ASGKMIHDCIRDNFHNPGVALFNSLLD 386
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ I+ N ++ Q A+ LYN+M + + +T L AC
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + H + + NSLL Y + +A +F+ + +V++W II L+
Sbjct: 362 GKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAM 421
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G ++A+ F + P+ T V++LSAC+ G + G+
Sbjct: 422 HGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQ 464
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P+ I NT+++ ++ PQ + LY +ML + YTF K + A +
Sbjct: 77 EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 136
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H HV+K+G +++F+ +L+ Y+ + +A +F+ DV+TW IIS +K
Sbjct: 137 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 196
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +E+ +F ++ K P TLV VLSACS L + GK +H++ E+N++L
Sbjct: 197 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 256
Query: 202 DNAVLD 207
+NA++D
Sbjct: 257 ENAMID 262
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 34/174 (19%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS + G ++H++V ++ ++N+++ Y ++ SA IF S+
Sbjct: 221 TLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 280
Query: 128 VFPDVVTWTTIISGLSKCG-------------------------------FHKEAIDMFC 156
D+++WTTI+SG + G KEA+++F
Sbjct: 281 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 340
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +VKP+ T+VSVL+AC+ LG+ +LG+ I + RN +N++ + NA++D
Sbjct: 341 NMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALID 394
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+S+ + A+ L+ M + +T L AC+ A + G I ++ + +D+F
Sbjct: 328 RSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLF 387
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
++N+L+ Y D+ A IF + D TWT +I GL+ G ++A+DMF +
Sbjct: 388 VRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS 447
Query: 160 VKPNANTLVSVLSACSSLG 178
+ P+ T + VLSAC+ G
Sbjct: 448 ILPDEITYIGVLSACTHTG 466
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + N +++ QS P NA Y M++ + T + LKAC+ A +
Sbjct: 65 IRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLES 124
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++IH H+++ G + D + +LL Y V +I SA ++F+ +V D+ +W +ISG ++
Sbjct: 125 IQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQG 184
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
EA+ +F +++ KPN +++ LSAC+ LG K G+ IH + + N +
Sbjct: 185 SKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVC 244
Query: 203 NAVLD 207
N V+D
Sbjct: 245 NVVID 249
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q S P A+ L+ +M N + AL AC+ ++G +IH ++
Sbjct: 175 NALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKV 234
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAID 153
+ + N ++ Y + A+ +F S+ D+VTW T+I + G +A++
Sbjct: 235 ERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALE 294
Query: 154 MFCGID---VKPNANTLVSVLSACSSLG 178
+F +D V P+ + ++VL AC+ G
Sbjct: 295 LFEKMDQSGVSPDDVSYLAVLCACNHGG 322
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P+ I NT+++ ++ PQ + LY +ML + YTF K + A +
Sbjct: 98 EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 157
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H HV+K+G +++F+ +L+ Y+ + +A +F+ DV+TW IIS +K
Sbjct: 158 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 217
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +E+ +F ++ K P TLV VLSACS L + GK +H++ E+N++L
Sbjct: 218 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 277
Query: 202 DNAVLD 207
+NA++D
Sbjct: 278 ENAMID 283
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 34/174 (19%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS + G ++H++V ++ ++N+++ Y ++ SA IF S+
Sbjct: 242 TLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 301
Query: 128 VFPDVVTWTTIISGLSKCG-------------------------------FHKEAIDMFC 156
D+++WTTI+SG + G KEA+++F
Sbjct: 302 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 361
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +VKP+ T+VSVL+AC+ LG+ +LG+ I + RN +N++ + NA++D
Sbjct: 362 NMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALID 415
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+S+ + A+ L+ M + +T L AC+ A + G I ++ + +D+F
Sbjct: 349 RSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLF 408
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
++N+L+ Y D+ A IF + D TWT +I GL+ G ++A+DMF +
Sbjct: 409 VRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS 468
Query: 160 VKPNANTLVSVLSACSSLG 178
+ P+ T + VLSAC+ G
Sbjct: 469 ILPDEITYIGVLSACTHTG 487
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 34/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT L+ + +P +AI L+ ++ S +HYT + LKACS + G +H +V K
Sbjct: 82 NTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEK 141
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW------------------- 135
G ++F+QN ++H Y +I A ++F+ + DV+TW
Sbjct: 142 LGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKL 201
Query: 136 ------------TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
T++I G ++CG KEAID+F ++ + PN T+V+VL AC+ +G+
Sbjct: 202 FAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNL 261
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
LG+ IH S R+ E NI + N ++D
Sbjct: 262 VLGRRIHDFSNRSGYEKNIRVCNTLIDM 289
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ +++ Q + AI L+ +M + N T L AC+
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + G+ +I + N+L+ YV + A +IF+++ VV+W+ +I+GL+
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G ++A+ +F VKPNA T + +L ACS +G + G+ A R+
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD 375
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 34/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT L+ + +P +AI L+ ++ S +HYT + LKACS + G +H +V K
Sbjct: 82 NTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEK 141
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW------------------- 135
G ++F+QN ++H Y +I A ++F+ + DV+TW
Sbjct: 142 LGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKL 201
Query: 136 ------------TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
T++I G ++CG KEAID+F ++ + PN T+V+VL AC+ +G+
Sbjct: 202 FAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNL 261
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
LG+ IH S R+ E NI + N ++D
Sbjct: 262 VLGRRIHDFSNRSGYEKNIRVCNTLIDM 289
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ +++ Q + AI L+ +M + N T L AC+
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + G+ +I + N+L+ YV + A +IF+++ VV+W+ +I+GL+
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G ++A+ +F VKPNA T + +L ACS +G + G+ A R+
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD 375
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/204 (32%), Positives = 108/204 (52%), Gaps = 5/204 (2%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L+ + F N +I QP+I NT+++ L + +AI Y M + N+
Sbjct: 53 LRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNN 112
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+TF LKAC+ Q G++IH V+K G D+F++ SL+ Y + AH++F+
Sbjct: 113 FTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDD 172
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ +VV+WT IISG G +EAIDMF +++ P++ T+V VLSAC+ LG G
Sbjct: 173 IPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG 232
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+ IH + N+ + +++D
Sbjct: 233 EWIHKCIMEMGMVRNVFVGTSLVD 256
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI ++ ++L + + +T + L AC+ G IH +++ G + ++F+ SL
Sbjct: 195 REAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSL 254
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ A +F+ + D+V+W +I G + G KEAID+F + +VKP+
Sbjct: 255 VDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDC 314
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T+V VLSAC+ LG+ +LG+ + RN N +L A++D
Sbjct: 315 YTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDL 358
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ AI L+ +M + YT L AC+ A + G + V + L++ + +
Sbjct: 295 PKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTA 354
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPN 163
L+ Y + A ++F + D V W IISGL+ G+ K + +F ++ +KP+
Sbjct: 355 LIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPD 414
Query: 164 ANTLVSVLSACSSLG 178
NT + +L C+ G
Sbjct: 415 GNTFIGLLCGCTHAG 429
Score = 42.7 bits (99), Expect = 0.097, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
++G HD ++ N +L D +F+ + P++ W T+I GL +AI+
Sbjct: 39 RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
+ + + PN T VL AC+ L +LG IH
Sbjct: 99 FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIH 135
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 5/194 (2%)
Query: 5 GLKSLKPTLSFKQLNQIHAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
GL+ ++ L+ N+ IPQP +TL+ LT AI +Y+ +
Sbjct: 15 GLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI 74
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ F A KAC+++ + E+H + G + D+F+ N+L+H Y K + A +
Sbjct: 75 KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARR 134
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F+ +V DVV+WT++ S KCGF ++ +D+F + VKPN T+ S+L AC+ L
Sbjct: 135 VFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKD 194
Query: 180 RKLGKAIHAHSLRN 193
K GK IH ++R+
Sbjct: 195 LKSGKEIHGFAVRH 208
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ ++ KM N T + L ACS + + G EIH +V +
Sbjct: 284 NAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFR 343
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + D+ +LL+ Y D+ + +F+ + DVV W T+I + G KEA+ +
Sbjct: 344 HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFL 403
Query: 155 FCGI---DVKPNANTLVSVLSACS 175
F + V+PN+ T VLS CS
Sbjct: 404 FDKMLLSRVQPNSVTFTGVLSGCS 427
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 38/198 (19%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ + ++ +M N T + L AC+ + G EIH +++G + ++F+ ++
Sbjct: 160 PRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSA 219
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVV--------------------------------- 133
L+ Y + A +F+ + DVV
Sbjct: 220 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 279
Query: 134 --TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
TW +I G + G +EA++MF + KPN T+ S+L ACS + ++GK IH
Sbjct: 280 EATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHC 339
Query: 189 HSLRNLNENNIILDNAVL 206
+ R+ ++ A+L
Sbjct: 340 YVFRHWKVGDLTSTTALL 357
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
F+QL++ P NT+++ + +NAI LYN ML +++T+ LK
Sbjct: 89 FQQLDE--------PTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLK 140
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ Q+G++IH HV K G D+++QNSL++ Y +DI + IF + V +
Sbjct: 141 ACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVAS 200
Query: 135 WTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W+ II+ + E + +F + + + LV+VLSAC+ LG+ LG+ H
Sbjct: 201 WSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSL 260
Query: 191 LRNLNENNIILDNAVLDF 208
L+N+ E N+ + +++D
Sbjct: 261 LKNITELNVAVMTSLMDM 278
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC+ A G H ++K ++ + SL+ YV + +F ++ +
Sbjct: 241 LSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQ 300
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++++ IISGL G+ ++A+ +F + ++P+ T VSVLSACS G
Sbjct: 301 LSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSG 349
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIFNSVVFPDVVTWTTIISGLS 143
++H ++K+G D F +S+L + D S A IF + P + T+I G
Sbjct: 50 QVHVQILKFGLFLDSFCSSSVLA-TCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYV 108
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ AI ++ + +V+P+ T VL AC+ L + G IH H + E+++
Sbjct: 109 NNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVY 168
Query: 201 LDNAVLDF 208
+ N++++
Sbjct: 169 VQNSLINM 176
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+PQ ++++ +++ Q+ P+ A+ Y KMLN + +T L C++ +K
Sbjct: 308 KLPQRNVVSWTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEK 367
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H H+++ G DI +N L+ YV + A+++F + DVV+WTT+I G +
Sbjct: 368 GKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVRDVVSWTTLIEGWVQ 427
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNEN 197
++EA+D F + V PN T + VL AC+ +GS GK IHA + L EN
Sbjct: 428 HRQYQEALDTFNDMQLEGVMPNTVTFLGVLKACAGMGSLVDGKRIHARIVEAGLAEN 484
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P++A +Y +M + TFT L CS + +KG+++H +++ G DI + N+
Sbjct: 131 PEDAYKMYEQMQKERVPVDRITFTTILNVCSTLRSLEKGMKVHQDMVRGGIRPDIILGNT 190
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
L+ Y ++ AH++F + D+VTW ++ G ++ G+ EA + F + KP+
Sbjct: 191 LIDMYAKCGNLKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPD 250
Query: 164 ANTLVSVLSACSSL 177
T +S+L+AC+SL
Sbjct: 251 KVTYISILNACTSL 264
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
++ L + P+N++ + + PSSY + L+ C+ +G +HAH+ K
Sbjct: 24 IRDLCLNGQPKNSLHILEQRGIEPSSYAYVCL---LRRCTHMKDLAEGKYVHAHMAKSDF 80
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ F+ N+L++ Y+ + A Q+F+ +V D+ T+T +++G +K G+ ++A M+
Sbjct: 81 VPTTFVLNALVNMYMKCGSLVDARQVFDRMVERDMFTYTMMLTGYAKLGYPEDAYKMYEQ 140
Query: 158 ID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ V + T ++L+ CS+L S + G +H +R +IIL N ++D
Sbjct: 141 MQKERVPVDRITFTTILNVCSTLRSLEKGMKVHQDMVRGGIRPDIILGNTLIDM 194
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 96/196 (48%), Gaps = 8/196 (4%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L Q H ++ I+ N ++ ++ A + ML+ + T+ L A
Sbjct: 201 LKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNA 260
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ + ++G +H+ ++K G D+ + +L++ + + A ++F + +VV+W
Sbjct: 261 CT---SLEQGTLLHSVIMKAGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNVVSW 317
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T++IS ++ G + A++ + + + + ++L+ C+ LG + GKA+H H ++
Sbjct: 318 TSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEKGKAVHGHIVQ 377
Query: 193 NLNENNIILDNAVLDF 208
+ +II +N ++D
Sbjct: 378 SGIATDIITENGLIDM 393
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--N 65
S+ +L++ QL H ++ PQ N++++ QSS+P +AI YN+M+ C S +
Sbjct: 49 SVSGSLAYAQL-LFHQ--MECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMV-CDSFSIPD 104
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+TF+ LKAC A +K E+H VI+ G+ D+ + +L+ Y + + A Q+F+
Sbjct: 105 TFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFD 164
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL 182
+ D+V W +IS S+ G H+EA+ + + +V + TLV ++S+C+ LG+ +
Sbjct: 165 KMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNI 224
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
G +H + N + ++ + NA++D
Sbjct: 225 GVQMHRFARENGLDQSLYVGNALIDM 250
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P ++ N ++ +Q Q A+ YN+M + + +T + +C+ A
Sbjct: 165 KMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNI 224
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+++H + G +++ N+L+ Y + A IF+ + D+ TW ++I G
Sbjct: 225 GVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGV 284
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EAI F + ++PN T + +L CS G
Sbjct: 285 HGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQG 321
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHF-YVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSK 144
+IHAHVI G H + I N LL+F ++V + A +F+ + P W +II G ++
Sbjct: 22 KIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQ 81
Query: 145 CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+AI M C P+ T VL AC + + + K +H +R + ++I
Sbjct: 82 SSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVI 141
Query: 201 L 201
+
Sbjct: 142 V 142
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 5/194 (2%)
Query: 5 GLKSLKPTLSFKQLNQIHAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
GL+ ++ L+ N+ IPQP +TL+ LT AI +Y+ +
Sbjct: 101 GLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI 160
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ F A KAC+++ + E+H + G + D+F+ N+L+H Y K + A +
Sbjct: 161 KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARR 220
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F+ +V DVV+WT++ S KCGF ++ +D+F + VKPN T+ S+L AC+ L
Sbjct: 221 VFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKD 280
Query: 180 RKLGKAIHAHSLRN 193
K GK IH ++R+
Sbjct: 281 LKSGKEIHGFAVRH 294
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ ++ KM N T + L ACS + + G EIH +V +
Sbjct: 370 NAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFR 429
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + D+ +LL+ Y D+ + +F+ + DVV W T+I + G KEA+ +
Sbjct: 430 HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFL 489
Query: 155 FCGI---DVKPNANTLVSVLSACS 175
F + V+PN+ T VLS CS
Sbjct: 490 FDKMLLSRVQPNSVTFTGVLSGCS 513
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 38/198 (19%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ + ++ +M N T + L AC+ + G EIH +++G + ++F+ ++
Sbjct: 246 PRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSA 305
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVV--------------------------------- 133
L+ Y + A +F+ + DVV
Sbjct: 306 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 365
Query: 134 --TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
TW +I G + G +EA++MF + KPN T+ S+L ACS + ++GK IH
Sbjct: 366 EATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHC 425
Query: 189 HSLRNLNENNIILDNAVL 206
+ R+ ++ A+L
Sbjct: 426 YVFRHWKVGDLTSTTALL 443
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 110/195 (56%), Gaps = 16/195 (8%)
Query: 22 HAQIIKIPQP---HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKA 75
H KI +P I NTL++ + +A+ LY +M S + + +T+ LKA
Sbjct: 73 HKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMR--ASGFVEPDTHTYPFLLKA 130
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
+ G IH+ VI+ G I++QNSLLH Y D+ SA+++F+ + D+V W
Sbjct: 131 VGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL- 191
++I+G ++ G +EA+ ++ +D +KP+ T+VS+LSAC+ +G+ LGK H + +
Sbjct: 191 NSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIK 250
Query: 192 ----RNLNENNIILD 202
RNL+ +N++LD
Sbjct: 251 VGLTRNLHSSNVLLD 265
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N+++ ++ P+ A+ LY +M + +T L AC+ A
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G H ++IK G ++ N LL Y + A +F+ +V + V+WT++I GL+
Sbjct: 241 GKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 145 CGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLG 183
G KEAI++F ++ K P T V +L ACS G K G
Sbjct: 301 NGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEG 343
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIF 102
S T +P+ K +N +Y + T K +IHA I+ G + D
Sbjct: 5 SETSVLLLPMVEKCINLLQTYGVSSLT-------------KLRQIHAFSIRNGVSISDAE 51
Query: 103 IQNSLLHFYVTVKD---IFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKEAIDMFCGI 158
+ L+ + V++ + AH++F+ + P +V W T+I G ++ G A+ ++ +
Sbjct: 52 LGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREM 111
Query: 159 D----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
V+P+ +T +L A + +LG+ IH+ +R+ + I + N++L
Sbjct: 112 RASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLL 163
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 116/211 (54%), Gaps = 8/211 (3%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLN 59
F+N SL PT + + H +IPQP I+ NT+ + ++ TP A L+ ++L
Sbjct: 58 FIN-FCSLNPTTT--SMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILF 114
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
+ YTF LKAC+ A ++G ++H IK G ++++ +L++ Y ++
Sbjct: 115 SGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDC 174
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A ++F+ + P VVT+ +I+G ++ EA+ +F + ++KP T++SVLS+C+
Sbjct: 175 ARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCAL 234
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LG+ LGK +H + +N + +D A++D
Sbjct: 235 LGALDLGKWMHEYVKKNGFNRFVKVDTALID 265
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 30/137 (21%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + + TF L ACS H ++ +
Sbjct: 307 AVSLFKEMRKAGTEPDEITFLGLLYACS---------------------HTGLVEEGFEY 345
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVS 169
FY ++D + V P + + ++ L + G +EA + G+ ++P +
Sbjct: 346 FY-GMRDKYG--------VIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRT 396
Query: 170 VLSACSSLGSRKLGKAI 186
+LSAC S G+ +LGK +
Sbjct: 397 LLSACGSHGNVELGKRV 413
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 15/212 (7%)
Query: 9 LKPTLSFKQLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
L T + LNQI+A I+ P N +++ T+ +PQNA+ +Y ML
Sbjct: 34 LSNTTRIRDLNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGV 93
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ YT LKA S + A Q G ++H++ IK G + + ++ ++ Y D SAH+
Sbjct: 94 LPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHK 153
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK-----PNANTLVSVLSACSSL 177
+F+ P + +W +ISGLS+ G +AI +F +D+K P+ T+VSV+SAC S+
Sbjct: 154 VFDENHEPKLGSWNALISGLSQGGLAMDAIVVF--VDMKRHGFEPDGITMVSVMSACGSI 211
Query: 178 GSRKLGKAIHAHSLR-NLNENNIIL-DNAVLD 207
G L +H + + NE +IL N+++D
Sbjct: 212 GDLYLALQLHKYVFQAKTNEWTVILMSNSLID 243
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P+ N L+ L+Q +AI ++ M + T + AC L++
Sbjct: 161 PKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIGDLYLALQL 220
Query: 89 HAHVI--KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
H +V K I + NSL+ Y + A+++F ++ +V +WT++I G + G
Sbjct: 221 HKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHG 280
Query: 147 FHKEAIDMF-CGID--VKPNANTLVSVLSACSSLGSRKLGK 184
KEA+ F C + VKPN T + VLSAC G+ + G+
Sbjct: 281 HAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGR 321
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 47/244 (19%)
Query: 11 PTLSF-------KQLNQIHAQIIK----------------------------------IP 29
PTLS KQL QIHAQ+++ IP
Sbjct: 37 PTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96
Query: 30 QPHIL--NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGL 86
P++ NTL++ SS P ++ ++ +ML+ P + +TF +KA S G
Sbjct: 97 HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
H VIK D+FI NSL+HFY ++ +++F + DVV+W ++I+ + G
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGG 216
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+EA+++F ++ VKPN T+V VLSAC+ + G+ +H++ RN ++ L N
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSN 276
Query: 204 AVLD 207
A+LD
Sbjct: 277 AMLD 280
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q P+ A+ L+ +M N T L AC+ + G +H+++ +
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH------ 148
+ + N++L Y + A ++F+ + D+V+WTT++ G +K G +
Sbjct: 266 NRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGL 325
Query: 149 ------KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
K+AI +F + VKPNA T ++L ACS +G + G+
Sbjct: 326 AMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR 370
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQK 84
I P + NT+++ ++S P+ AI LY M+ + N++TF L +C+ + +
Sbjct: 70 IDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEP 129
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G E+H+H+IK+G D+F++N+L+H Y ++ A +F+ + D+V++ T+I G ++
Sbjct: 130 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN--ENNI 199
+ A+ +F + + P+ T V++ S CS L +GK IHA +NL ++NI
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249
Query: 200 ILDNAVLD 207
+L +A++D
Sbjct: 250 LLKSAIVD 257
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 38/211 (18%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++K + + P++A+ L+ +M N + +TF CS+ + G +IHA V K
Sbjct: 181 NTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYK 240
Query: 95 YGHLHD--IFIQNSLLHFYVT------VKDIFS--------------------------A 120
D I ++++++ Y + +FS A
Sbjct: 241 NLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVA 300
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 177
++FN + DV++WT +ISG S+ G EA+++F ++ +KP+ TLV+VLSAC+ L
Sbjct: 301 RKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARL 360
Query: 178 GSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
G+ LGK ++ + N + N IL AV+D
Sbjct: 361 GAFDLGKRLYHQYIENGVFNQNTILTAAVMD 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV--KD-IFSAHQIFNSVVF 129
L++C + ++GL+IHA I G H IF + L+ F+ + KD + + +F+ +
Sbjct: 16 LESCK---SFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDC 72
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKA 185
P++ W T+I G S+ +EAI ++ + K PN T +L++C+ L S + G
Sbjct: 73 PNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHE 132
Query: 186 IHAHSLRNLNENNIILDNAVL 206
+H+H +++ E+++ + NA++
Sbjct: 133 VHSHIIKHGFESDLFVRNALI 153
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ A+ L+ +M + T L AC+ A G ++ I+ G +
Sbjct: 323 SQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENG----V 378
Query: 102 FIQNSLL-----HFYVTVKDIFSAHQIFNSV--VFPDVVTWTTIISGLSKCGFHKEAIDM 154
F QN++L Y I SA +IF V + ++I+GL++ G + AI +
Sbjct: 379 FNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITV 438
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F +KP+ T V VL AC G + GK +
Sbjct: 439 FRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKL 473
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A +
Sbjct: 92 ETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFK 151
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVT------VKDIF------------------- 118
+G +IH HV+K G+ D+F+ SL+ YV + +F
Sbjct: 152 EGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYA 211
Query: 119 ------SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVS 169
SA ++F+ + DVV+W +ISG ++ G +KEA+++F +++P+ +T+V+
Sbjct: 212 SRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVT 271
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ GS +LG+ +H+ + +N+ + N+++D
Sbjct: 272 VVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDL 310
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T + AC+ + + + G ++H+ +
Sbjct: 235 NAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 294
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I NSL+ Y ++ +A +F +++ DV++W T+I G + +KEA+ +
Sbjct: 295 HGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + +PN T++S+L AC+ LG+ +G+ IH +
Sbjct: 355 FQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML N T L AC+ A G IH ++ K
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ ++ SL+ Y DI +AHQ+FNS++ + +W +I G + G A
Sbjct: 396 RLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAF 455
Query: 153 DMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+F I ++P+ T V +LSACS G LG+ I
Sbjct: 456 DIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHI 492
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 78/264 (29%), Positives = 122/264 (46%), Gaps = 70/264 (26%)
Query: 14 SFKQLNQIHAQIIK----------------------------------IPQPH--ILNTL 37
SF+ L QIH+QIIK I QP+ I NT+
Sbjct: 44 SFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTM 103
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
++ + SS+P AI Y +ML C N YTF LK+C+ A Q+G +IH HV+K G
Sbjct: 104 IRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGL 163
Query: 98 LHDIFIQNSLLHFYV---------------TVKDIFS----------------AHQIFNS 126
D F+ SL++ Y +++D S A ++F
Sbjct: 164 ESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEE 223
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ D V+W +I+G ++ G +EA+ F + +V PN +T+V+VLSAC+ GS +LG
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG 283
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+ + + +N+ L NA++D
Sbjct: 284 NWVRSWIEDHGLGSNLRLVNALID 307
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ QS + A+ + +M + N T L AC+ + + + G + + +
Sbjct: 233 NAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIED 292
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ + N+L+ Y D+ A +F + D+++W +I G S +KEA+ +
Sbjct: 293 HGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALAL 352
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + +V+PN T VS+L AC+ LG+ LGK IHA+
Sbjct: 353 FRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-I 93
N ++ + ++ + A+ L+ KM N TF L AC+ A G IHA++
Sbjct: 334 NVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDK 393
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K+ L + + SL+ Y +I +A Q+F + + +W +ISGL+ G A++
Sbjct: 394 KFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALE 453
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+F + +P+ T V VLSACS G +LG+
Sbjct: 454 LFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 61 PSSYNHYTFTQ---ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT--VK 115
P+S Y Q +L S + Q +IH+ +IK G + F + L+ F
Sbjct: 21 PTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSV 170
++ A +F S+ P+ W T+I G S AID + CG V+PN+ T +
Sbjct: 81 NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG--VEPNSYTFPFL 138
Query: 171 LSACSSLGSRKLGKAIHAHSLR 192
L +C+ +G+ + GK IH H L+
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLK 160
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL+ +Q+ P + L+ PS +++TF LK CS + G ++HA + K
Sbjct: 64 NTLLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTK 123
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D++IQN LLH Y D+ A +F+ + DVV+WT++I GL EAI++
Sbjct: 124 LGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINL 183
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
F CG++V N T++SVL AC+ G+ +G+ +HA NL E I
Sbjct: 184 FERMLQCGVEV--NEATVISVLRACADSGALSMGRKVHA----NLEEWGI 227
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 7/159 (4%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P +++ +++ L P AI L+ +ML C N T L+AC+ + A
Sbjct: 155 RMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSM 214
Query: 85 GLEIHAHVIKYG-HLHDIF-IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G ++HA++ ++G +H + +L+ Y I SA ++F+ VV DV WT +ISGL
Sbjct: 215 GRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGL 274
Query: 143 SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
+ G K+AIDMF ++ VKP+ T+ +VL+AC + G
Sbjct: 275 ASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAG 313
>gi|255572347|ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533535|gb|EEF35275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 364
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P + N +L+ L QS P ++ Y M+ + T + LKAC+ A +
Sbjct: 63 ILTPSTNDWNAVLRGLIQSPDPIDSFKWYKTMIRGSYKVDALTCSFVLKACARVLAFSES 122
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H+H+++ G + D + +LL Y D+ SA ++F+ ++ D+ +W +ISG ++
Sbjct: 123 TQLHSHIVRKGFVADALLGTTLLDLYAKTGDLDSAQKMFDEMIVKDIASWNALISGFAQG 182
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
EA+ +F ++V KPN T++ LSACS LG+ K G+ IH + + N+ +
Sbjct: 183 NKPSEALGLFKRMEVLGFKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDMNVQVC 242
Query: 203 NAVLD 207
NA +D
Sbjct: 243 NAAID 247
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 114/217 (52%), Gaps = 34/217 (15%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P NT+++ SS P +A+ LY M++ S N YTF K+C+ + A Q+G
Sbjct: 38 IQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEG 97
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYV---------------TVKDIFS----------- 119
+IHA ++KYG D+ + SL+ Y + +D+ S
Sbjct: 98 KQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASR 157
Query: 120 -----AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVL 171
A ++F+ + DVV+W +ISG ++ G +KEA+++F +DVKP+ +T+ +VL
Sbjct: 158 GNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVL 217
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S C+ G+ +LG+ IH+ + +N+ L NA++D
Sbjct: 218 STCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDL 254
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
S +++ +IP ++ N ++ + + A+ L+N+M+ + T
Sbjct: 156 SRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMAT 215
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L C+ + + G +IH+ + +G ++ + N+L+ Y ++ AH +F + + D
Sbjct: 216 VLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKD 275
Query: 132 VVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
V++W T+I G + HKEA+ +F + PN T++S+L AC+ LG+ +G+ IH
Sbjct: 276 VISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHV 335
Query: 189 H 189
+
Sbjct: 336 Y 336
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY--GHLHDIFIQN 105
+ A+ ++ +ML + N T L AC+ A G IH ++ K G + + +Q
Sbjct: 293 KEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQT 352
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
SL+ Y +I +A+Q+F++++ + + +I G + G A D+ + ++P
Sbjct: 353 SLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEP 412
Query: 163 NANTLVSVLSACSSLGSRKLGKAI 186
+ T V +LSACS G LG+ I
Sbjct: 413 DDITFVGLLSACSHAGLSDLGRKI 436
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 42/221 (19%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KIP P +I NT+ + + +N I +Y++ML+ S N +T+ ++AC + +A ++
Sbjct: 79 KIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEE 138
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IHAHV+K+G D F N+L+H YV + + A ++F+++ DVV+WT++I+G S+
Sbjct: 139 GKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQ 198
Query: 145 CGFHKEAIDMFCGIDVKPNANTL------------------------------------- 167
GF +A ++F ++ P N++
Sbjct: 199 WGFVDKAREVF---ELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVA 255
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S+LSAC+ LG+ + GK IH + ++ E + L V+D
Sbjct: 256 ASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDM 296
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ QS+ A L+++M + + L AC+ A ++G IH ++ K
Sbjct: 221 NAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEK 280
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + +++ Y + A ++FN + + +W +I GL+ G + AI++
Sbjct: 281 SGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIEL 340
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ V P+ T V+VLSAC+ G + GK
Sbjct: 341 FKEMEREMVAPDGITFVNVLSACAHSGLVEEGK 373
Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ H+ +I+ G D ++ F K D+ A ++F+ + PD + TI G +
Sbjct: 38 QYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLR 97
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ I M+ + V PN T ++ AC + + GK IHAH L+
Sbjct: 98 WQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLK 148
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+++ SS P +++ LY M++ N YTF LK+C+ +
Sbjct: 22 ETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFT 81
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYV------------------------------- 112
+G +IH V+K G D+++ SL+ YV
Sbjct: 82 EGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYA 141
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVS 169
+ DI SA ++F+ + DVV+W +ISG ++ G +KEA+++F ++V+P+ +T V+
Sbjct: 142 SRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVT 201
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
VLSAC+ GS +LG+ +H+ + ++N+ + NA++D
Sbjct: 202 VLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDL 240
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T+ L AC+ + + + G ++H+ V
Sbjct: 165 NAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDD 224
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y ++ +A +F + + DV++W T+I G + +KEA+ +
Sbjct: 225 HGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLL 284
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++SVL AC+ LG+ +G+ IH +
Sbjct: 285 FQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVY 322
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML + N T L AC+ A G IH ++ K
Sbjct: 266 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDK 325
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +AHQ+FNS++ + +W +I G + G +
Sbjct: 326 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASF 385
Query: 153 DMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F I ++P+ T V +LSACS G LG+ H R++ ++
Sbjct: 386 DLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMTQD 429
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 70/272 (25%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIK----------------------------------IPQP 31
L L SF+ L QIH+QIIK I QP
Sbjct: 36 LTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQP 95
Query: 32 H--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
+ I NT+++ + SS+P AI Y +ML C N YTF LK+C+ A Q+G +IH
Sbjct: 96 NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIH 155
Query: 90 AHVIKYGHLHDIFIQNSLLHFYV---------------TVKDIFS--------------- 119
HV+K G D F+ SL++ Y +++D S
Sbjct: 156 GHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLD 215
Query: 120 -AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
A ++F + D V+W +I+G ++ G +EA+ F + +V PN +T+V+VLSAC+
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
GS +LG + + + +N+ L NA++D
Sbjct: 276 QSGSLELGNWVRSWIEDHGLGSNLRLVNALID 307
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ QS + A+ + +M + N T L AC+ + + + G + + +
Sbjct: 233 NAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIED 292
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ + N+L+ Y D+ A +F + D+++W +I G S +KEA+ +
Sbjct: 293 HGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALAL 352
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + +V+PN T VS+L AC+ LG+ LGK IHA+
Sbjct: 353 FRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-I 93
N ++ + ++ + A+ L+ KM N TF L AC+ A G IHA++
Sbjct: 334 NVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDK 393
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K+ L + + SL+ Y +I +A Q+F + + +W +ISGL+ G A++
Sbjct: 394 KFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALE 453
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+F + +P+ T V VLSACS G +LG+
Sbjct: 454 LFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 61 PSSYNHYTFTQ---ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT--VK 115
P+S Y Q +L S + Q +IH+ +IK G + F + L+ F
Sbjct: 21 PTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSV 170
++ A +F S+ P+ W T+I G S AID + CG V+PN+ T +
Sbjct: 81 NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG--VEPNSYTFPFL 138
Query: 171 LSACSSLGSRKLGKAIHAHSLR 192
L +C+ +G+ + GK IH H L+
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLK 160
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--N 65
S+ +L++ QL H ++ PQ N++++ QSS+P +AI YN+M+ C S +
Sbjct: 49 SVSGSLAYAQL-LFHQ--MECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMV-CDSFSIPD 104
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+TF+ LKAC A +K E+H VI+ G+ D+ + +L+ Y + + A Q+F+
Sbjct: 105 TFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFD 164
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL 182
+ D+V W +IS S+ G H+EA+ + + +V + TLV ++S+C+ LG+ +
Sbjct: 165 KMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNI 224
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
G +H + N + ++ + NA++D
Sbjct: 225 GVQMHRFARENGLDQSLYVGNALIDM 250
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P ++ N ++ +Q Q A+ YN+M + + +T + +C+ A
Sbjct: 165 KMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNI 224
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+++H + G +++ N+L+ Y + A IF+ + D+ TW ++I G
Sbjct: 225 GVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGV 284
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EAI F + ++PN T + +L CS G
Sbjct: 285 HGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQG 321
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHF-YVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSK 144
+IHAHVI G H + I N LL+F ++V + A +F+ + P W +II G ++
Sbjct: 22 KIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQ 81
Query: 145 CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+AI M C P+ T VL AC + + + K +H +R + ++I
Sbjct: 82 SSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVI 141
Query: 201 L 201
+
Sbjct: 142 V 142
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Query: 26 IKIPQPHILNTLLKLLTQ-SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS--LAHAH 82
I P + N ++K +Q S PQ+ L+ MLN + +TF LKAC+ L A
Sbjct: 75 ITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAP 134
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
Q G ++H HV++ G D+F+ N+LL+FY D+ +A+++F+ D V++ T+I+G
Sbjct: 135 QFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGF 194
Query: 143 SKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN--EN 197
++ G +F G+ V+P+ T V++LS CS L ++G+ +H R L
Sbjct: 195 ARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGG 254
Query: 198 NIILDNAVLD 207
N++L N ++D
Sbjct: 255 NVLLVNKLVD 264
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 38/192 (19%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA--- 90
NT++ + ++ +M + YTF L CS+ ++ G ++H
Sbjct: 187 FNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVY 246
Query: 91 --------HVIKYGHLHDIFIQ------------------------NSLLHFYVTVKDIF 118
+V+ L D++ + SL+ Y ++
Sbjct: 247 RELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVK 306
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACS 175
A ++F+ + DVV+WT +ISG S G +EA+++F G+ +KP+ +V+ LSAC+
Sbjct: 307 VARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACA 366
Query: 176 SLGSRKLGKAIH 187
LG+ +LG+ IH
Sbjct: 367 RLGALELGRRIH 378
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 18/148 (12%)
Query: 73 LKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH---QIFNSVV 128
L +C ++ AHQ I+AH+I G +++ + +L FY + S H +F +
Sbjct: 21 LSSCKTMQQAHQ----IYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQIT 76
Query: 129 FPDVVTWTTIISGLSKCGFH---KEAIDMFCGI---DVKPNANTLVSVLSACSS--LGSR 180
PD+ W II S+ H + +F + V P++ T +L AC++ + +
Sbjct: 77 NPDIFLWNAIIKAYSQ--IHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAP 134
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ G +H H LRN +++ ++NA+L+F
Sbjct: 135 QFGFQVHCHVLRNGFGSDVFVNNALLNF 162
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 42/222 (18%)
Query: 22 HAQII----KIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
+AQI+ P + N +++ + S P+ ++ LY +ML + +N YTF LKACS
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD------ 131
A ++ +IHA + K G+ +D++ NSL++ Y + AH +F+ + PD
Sbjct: 127 NLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNS 186
Query: 132 -------------------------VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
++WTT+ISG + +KEA+ +F + DV+P+
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPD 246
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+L + LSAC+ LG+ + GK IH++ LN+ I +D+ +
Sbjct: 247 NVSLANALSACAQLGALEQGKWIHSY----LNKTRIRMDSVL 284
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ + A+ L+++M N ++ + AL AC+ A ++G IH+++ K
Sbjct: 217 TMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKT 276
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D + L+ Y ++ A ++F ++ V WT +ISG + G +EAI F
Sbjct: 277 RIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKF 336
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ +KPN T +VL+ACS G + GK I R+ N
Sbjct: 337 MEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Query: 57 MLNCPSSYNH--YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV-- 112
+++C S H Y L+ CS ++ +IHA ++K G + D + L F +
Sbjct: 3 VISCSFSLEHNLYETMSCLQRCS---KQEELKQIHARMLKTGLMQDSYAITKFLSFCISS 59
Query: 113 TVKDIFSAHQI-FNSVVFPDVVTWTTIISGLSKCGFHKEAI-----DMFCGIDVKPNANT 166
T D QI F+ PD W +I G S C E M C NA T
Sbjct: 60 TSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS-CSDEPERSLLLYQRMLCS-SAPHNAYT 117
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+L ACS+L + + IHA + EN++ N++++
Sbjct: 118 FPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLIN 158
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + ++LLK+ ++ + + Y +ML + ++YTFT +KAC+ A + G EI
Sbjct: 88 PDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEI 147
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+HV+ G+ D+++Q +L+ Y D+ A ++F+++ ++ W ++ISG + G
Sbjct: 148 HSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLP 207
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+E+I +F +P++ T+VS+LS+CS LG+ G +H ++ N + N++L ++
Sbjct: 208 QESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSL 267
Query: 206 LD 207
++
Sbjct: 268 IN 269
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ I+ N+L+ Q+ PQ +I L++ M+ + T L +CS A G
Sbjct: 186 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 245
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H + G ++ + SL++ Y ++ A ++F+S+ +VVTWT +ISG
Sbjct: 246 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 305
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAI 186
G+ ++A+++F + +PN T V+VLSAC+ G G+ +
Sbjct: 306 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV 349
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++HAH+I G + L+ T I A ++F +V PD + +++ SK G
Sbjct: 45 QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG 104
Query: 147 FHKEAI-----DMFCGIDVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSL 191
F + + +F G P +N T SV+ AC+ L + +LGK IH+H +
Sbjct: 105 FSIDTVLFYRRMLFSG---APQSNYTFTSVIKACADLSALRLGKEIHSHVM 152
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P+P + NT++K ++ P A+ +Y KM + + +TF +KAC+ GL +
Sbjct: 98 PRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGM 157
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H HV+K+G ++ L+ YV ++ A +F S+V D+V W +I+ + GF
Sbjct: 158 HGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFS 217
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+A+ F + +KP++ T+VS LSAC LG + G+ I+ + ++NII+ NA
Sbjct: 218 SKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNAR 277
Query: 206 LD 207
LD
Sbjct: 278 LD 279
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + Q+ A+ + +M + T AL AC + G EI+ +
Sbjct: 205 NALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFARE 264
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +I + N+ L D+ A +F+ + +V++W+T+I G + G ++A+ +
Sbjct: 265 EGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALAL 324
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + V+PN T ++VLSACS G
Sbjct: 325 FSRMKNQGVQPNYVTFLAVLSACSHTG 351
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLS 172
D+ A Q+F+ + P W TI+ G K G +A+ ++ + V+P+ T V+
Sbjct: 84 DMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIK 143
Query: 173 ACSSLGSRKLGKAIHAHSLR 192
AC+ L G +H H ++
Sbjct: 144 ACAELAELWAGLGMHGHVVK 163
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 28 IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P P+ + N ++K ++ P +A+ +Y +ML + YT+ LK + A + G
Sbjct: 79 MPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCG 138
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E+H H++K G ++F+QN+L+H Y ++ A +F+ DVVTW +ISG ++
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
E++ +F ++ V P++ TLVSVLSACS L +GK +H + + E + +
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERDFVSW 258
Query: 203 NAVLD 207
A++D
Sbjct: 259 TAMID 263
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + L+ +M + +T L AC+ A + G I A++ K D F+ N+L
Sbjct: 272 KEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNAL 331
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC----------- 156
+ Y ++ A +IFN++ D ++WT +I GL+ G+ +EA+DMF
Sbjct: 332 IDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDE 391
Query: 157 ---GIDVKPNANTLVSVLSAC 174
+ VKPN+ S+L AC
Sbjct: 392 VIKNMPVKPNSIVWGSLLGAC 412
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + D V+WT +I G + KE + +F + ++KP+ T+VS+L+AC+ LG+
Sbjct: 247 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 306
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
+LG+ I A+ +N + + + NA++D
Sbjct: 307 ELGEWIKAYIDKNEIKIDSFVGNALIDM 334
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 73 LKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVF 129
+K C S+A Q IH+ I G + + + ++ F + D+ A +F+++
Sbjct: 26 IKTCKSMAQLKQ----IHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPG 81
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
P+ W +I G S+ G A+ M+C + V P+ T +L + + K G+ +
Sbjct: 82 PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141
Query: 187 HAHSLRNLNENNIILDNAVL 206
H H ++ +N+ + NA++
Sbjct: 142 HDHIVKLGFSSNVFVQNALI 161
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L L+QS + A+ L+ +M Y F+ L AC+ ++ G ++H V+K G
Sbjct: 242 MLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG 301
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF- 155
+ ++ N+L+ Y + + A Q+FN+++ D V++ ++ISGLS+ G+ +A+++F
Sbjct: 302 FSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFK 361
Query: 156 --CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
C +KP+ T+ S+LSACSS+G+ +GK H+++++ ++IIL+ A+LD
Sbjct: 362 KMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDL 416
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+L+ L+Q A+ L+ KM L+C + T L ACS A G + H++ I
Sbjct: 341 NSLISGLSQQGYSDKALELFKKMCLDCLKP-DCVTVASLLSACSSVGALLVGKQFHSYAI 399
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G DI ++ +LL YV DI +AH+ F S +VV W ++ E+
Sbjct: 400 KAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFK 459
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + ++PN T S+L CSSL + LG+ IH L+ + N+ + + ++D
Sbjct: 460 IFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLID 516
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE-IHAHVI 93
N +L + L+ +ML + T+ L+ C +E IHA I
Sbjct: 138 NKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTI 197
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+G+ + +F+ N L+ Y + SA ++F+ + D V+W ++SGLS+ G +EA+
Sbjct: 198 THGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVL 257
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+FC + V P SVLSAC+ + K+G+ +H L+
Sbjct: 258 LFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLK 299
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ QS + A+ L+++M N +TF A+ A + + G +IHA +IK
Sbjct: 644 NSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIK 703
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + N L+ Y +I A + F + + ++W +++G S+ G +A+ +
Sbjct: 704 TGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSL 763
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + V PN T V VLSACS +G
Sbjct: 764 FEDMKQLGVLPNHVTFVGVLSACSHVG 790
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T+ L+ CS A G +IH V+K G ++++ + L+ Y + + A +IF
Sbjct: 472 NQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIF 531
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT +I+G ++ EA+++F + + + S +SAC+ + +
Sbjct: 532 RRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALN 591
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IHA + + +++ + NA++
Sbjct: 592 QGQQIHAQACVSGYSDDLSVGNALVSL 618
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 84/160 (52%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + ++ F A+ AC+ A +G +IHA G+ D+ + N+L+
Sbjct: 558 ALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVS 617
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + A+ F+ + D ++W ++ISG ++ G +EA+ +F + + N+ T
Sbjct: 618 LYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFT 677
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+SA +++ + KLGK IHA ++ +++ + N ++
Sbjct: 678 FGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLI 717
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 38/224 (16%)
Query: 22 HAQIIKIPQPH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
HA ++ + P I NT+L+ T P + LY ML+ N+YTF+ L+AC+
Sbjct: 65 HAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACA 124
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
G+ +HA ++ G F+QN LLH Y + + SA ++F+ V DVVTWT
Sbjct: 125 QLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTA 184
Query: 138 IISGLSKC-------------------------------GFHKEAIDMFCGIDV---KPN 163
+I+G +K G +EA+++F + + +PN
Sbjct: 185 VINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPN 244
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+V L+AC+ LG+ G+ IHA+ RN + IL A++D
Sbjct: 245 HGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALID 288
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+N M NH AL AC+ A +G IHA+V + + D + +L
Sbjct: 227 REALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTAL 286
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y + +A ++F+ ++ DV +T++ISGL+ G AI+MF + V PN
Sbjct: 287 IDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNE 346
Query: 165 NTLVSVLSACSSLG 178
T + +LSACS +G
Sbjct: 347 VTFICLLSACSRVG 360
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P AI +Y ++ + YT LK+C+ + +IH +K D+F+QNS
Sbjct: 165 PWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNS 224
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT 166
+H Y D A ++F+ + DVV+WT +ISG K G +A+ +F +DV PNA T
Sbjct: 225 FVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMDVAPNAAT 284
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VS+L AC LG LGK IH + + +++ N ++D
Sbjct: 285 FVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMD 325
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ L+ +M P N TF L AC G IH V KY H ++ + N+L+
Sbjct: 268 DAVALFLRMDVAP---NAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLM 324
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNAN 165
YV + + A ++F+ + D+V+WT++ISGL + +E++D+F G +P+
Sbjct: 325 DMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGV 384
Query: 166 TLVSVLSACSSLGSRKLGKAIHAH 189
L SVLSAC+SLG G+ +H +
Sbjct: 385 ILTSVLSACASLGLLDYGRWVHEY 408
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ I++ +++ L Q PQ ++ L+ +ML + T L AC+
Sbjct: 342 EIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDY 401
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++ D+ I SL+ Y I A Q+FN + ++ TW I GL+
Sbjct: 402 GRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAI 461
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
G +EA+ F + +PN T ++V SAC G G++
Sbjct: 462 NGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRS 505
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 38/224 (16%)
Query: 22 HAQIIKIPQPH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
HA ++ + P I NT+L+ T P + LY ML+ N+YTF+ L+AC+
Sbjct: 40 HAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACA 99
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
G+ +HA ++ G F+QN LLH Y + + SA ++F+ V DVVTWT
Sbjct: 100 QLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTA 159
Query: 138 IISGLSKC-------------------------------GFHKEAIDMFCGIDV---KPN 163
+I+G +K G +EA+++F + + +PN
Sbjct: 160 VINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPN 219
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+V L+AC+ LG+ G+ IHA+ RN + IL A++D
Sbjct: 220 HGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALID 263
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+N M NH AL AC+ A +G IHA+V + + D + +L
Sbjct: 202 REALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTAL 261
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y + +A ++F+ ++ DV +T++ISGL+ G AI+MF + V PN
Sbjct: 262 IDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNE 321
Query: 165 NTLVSVLSACSSLG 178
T + +LSACS +G
Sbjct: 322 VTFICLLSACSRVG 335
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 43/231 (18%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
TL F QLN P N +++ T +P+ A+ L+ ML + + +T+
Sbjct: 77 TLVFDQLNA--------PDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPF 128
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
+ AC + A G+ HA IK G D+++QN++++ Y +++ ++F+ + +
Sbjct: 129 VINACMASSALDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRN 188
Query: 132 VVTWTTIISGLSKCGF----------------------------HKEAIDMFCGID---- 159
V WTT+ISGL CG HK+ I+ F +
Sbjct: 189 VFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQ 248
Query: 160 ---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V+PN TLVS++ AC+ +GS KLG+ +H +L+N E L A++D
Sbjct: 249 VDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALID 299
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 47 PQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
P A L+ +M + N YT ++AC+ + + G +H +K G + F+
Sbjct: 236 PIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGT 295
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---P 162
+L+ Y + A +F+ + + TW T+I+ L G+ EA+ +F ++ P
Sbjct: 296 ALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVP 355
Query: 163 NANTLVSVLSACSSLGSRKLGK 184
+A T V VLSAC + +L +
Sbjct: 356 DAITFVGVLSACVYMNDLELAQ 377
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H +I++G +D + L+ + + A +F+ + PDV TW +I + G
Sbjct: 43 QVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAPDVFTWNVMIRAFTIGG 102
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
K A+ +F + P+ T V++AC + + LG HA +++ ++ + N
Sbjct: 103 SPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHALAIKMGFWGDLYVQN 162
Query: 204 AVLD 207
+++
Sbjct: 163 TMMN 166
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A +
Sbjct: 46 ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 105
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYV---------------TVKDIFS--------- 119
+G +IH HV+K G+ D+++ SL+ YV + +D+ S
Sbjct: 106 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYA 165
Query: 120 -------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
A ++F+ + DVV+W +ISG ++ G +KEA+++F + +V+P+ +T+V+
Sbjct: 166 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 225
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ GS +LG+ +H + +N+ + NA++D
Sbjct: 226 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 264
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++ N ++ ++ + A+ L+ M+ + T + AC+ + + +
Sbjct: 179 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 238
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H + +G ++ I N+L+ Y ++ +A +F + + DV++W T+I G +
Sbjct: 239 GRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTH 298
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+KEA+ +F + PN T++S+L AC+ LG+ +G+ IH +
Sbjct: 299 MNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVY 346
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A G IH ++ K
Sbjct: 290 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINK 349
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + + SL+ Y DI +A Q+F+S++ + +W +I G + G A
Sbjct: 350 RLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAF 409
Query: 153 DMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F GID P+ T V +LSACS G LG+ H R+++++
Sbjct: 410 DLFSKMRKNGID--PDDITFVGLLSACSHSGMLDLGR----HIFRSMSQD 453
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 115/217 (52%), Gaps = 34/217 (15%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A ++G
Sbjct: 63 IQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEG 122
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVT---------VKD-------------------- 116
++H V+K+G D++I SL+ YV V D
Sbjct: 123 QQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASR 182
Query: 117 --IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVL 171
I SAH++F+ + DVV+W ISG ++ G +KEA+++F + +V+P+ +T+V+VL
Sbjct: 183 GXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVL 242
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SAC+ GS +LG+ +H+ + N+ + NA++D
Sbjct: 243 SACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDL 279
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H +IP ++ N + ++ + A+ L+ KM+ + T L AC+ +
Sbjct: 189 HKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQS 248
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ + G ++H+ + +G ++ I N+L+ Y ++ +A +F + DV++W T+I
Sbjct: 249 GSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLI 308
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
G + +KEA+ +F + KPN T++S+LSAC+ LG+ +G+ IH +
Sbjct: 309 GGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVY 361
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ ML N T L AC+ A G IH ++ K
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDK 364
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +A Q+F+S++ + +W +I G + G A
Sbjct: 365 RLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAF 424
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
D+F + ++P+ T V +LSACS G LG+ I R+
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRD 468
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P +I NT+++ + + P + + +M+ + +F ALKA +G
Sbjct: 218 IEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFLTALEG 277
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH + K G + +QN L+HFY + A ++F+ DVV+WT++I G S
Sbjct: 278 ESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTH 337
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIIL 201
++ +A+ +F + DV+PN T++SVLSACS G LGK+IH + R NLN ++ L
Sbjct: 338 DYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNL-SVNL 396
Query: 202 DNAVLDF 208
NA+LD
Sbjct: 397 MNAILDM 403
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ L++ ML N T L ACS G IH +V + + + N++L
Sbjct: 342 DALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAIL 401
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG--------FH------------ 148
YV + +A +IF+S+ DV +WT++++G +K G F
Sbjct: 402 DMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNA 461
Query: 149 -----------KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA-HSLRN 193
K+AI +F G + P NTLV VLSAC LG LG+ IH H R
Sbjct: 462 MIAGYSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERK 521
Query: 194 LNENNIILDNAVLDF 208
++I+ NA++D
Sbjct: 522 QKGTSVIIANALIDM 536
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ N ++ +Q++ P+ AI L++ M+ T L AC G
Sbjct: 451 MPKRNVVSWNAMIAGYSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLG 510
Query: 86 LEIHA-HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
IH H+ + + I N+L+ Y I +A ++FN + D+V+W ++I+ +
Sbjct: 511 RLIHMYHIERKQKGTSVIIANALIDMYAKCGVIDAAARVFNGMPGRDLVSWNSMIAACAS 570
Query: 145 CGFHKEAIDMF 155
G K+A+ MF
Sbjct: 571 HGHAKQALLMF 581
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+I AH+I G + F + +L F DI AH +FN + +P+ W T+I G S
Sbjct: 176 QIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMIRGFSN 235
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ F + V+ + + V L A + G++IH
Sbjct: 236 AKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFLTALEGESIH 281
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 98/161 (60%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
++ Y +M+ + ++YTFT +K+C+ A + G IH HV+ G D+++Q +L+
Sbjct: 95 SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMS 154
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANT 166
FY + +A ++F+ + VVTW ++ISG + GF KEAI +F I V+PN+ T
Sbjct: 155 FYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSAT 214
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VSVLSAC+ LG+ LG +H +++ N + N++L ++++
Sbjct: 215 FVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLIN 255
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + AI L+++M N TF L AC+ A G +H + +
Sbjct: 181 NSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVG 240
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + SL++ Y ++ A ++F+S+ +VV WT +ISG G+ +A+++
Sbjct: 241 NGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVEL 300
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
F + + PN+ T V+VLSAC+ G G+ +
Sbjct: 301 FHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRV 335
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++HAHVI G+ F+ LL+ I QIF V PD +T++I SK
Sbjct: 30 QVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSK-- 87
Query: 147 FHKEAI------DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
FH ++ +V P+ T SV+ +C+ L + + G+ IH H L N +++
Sbjct: 88 FHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVY 147
Query: 201 LDNAVLDF 208
+ A++ F
Sbjct: 148 VQTALMSF 155
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + ++LLK+ ++ + + Y +ML + ++YTFT +KAC+ A + G EI
Sbjct: 152 PDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEI 211
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+HV+ G+ D+++Q +L+ Y D+ A ++F+++ ++ W ++ISG + G
Sbjct: 212 HSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLP 271
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+E+I +F + +P++ T+VS+LS+CS LG+ G +H ++ N + N++L ++
Sbjct: 272 QESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSL 331
Query: 206 LD 207
++
Sbjct: 332 IN 333
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ I+ N+L+ Q+ PQ +I L++ M+ + T L +CS A G
Sbjct: 250 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 309
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H + G ++ + SL++ Y ++ A ++F+S+ +VVTWT +ISG
Sbjct: 310 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 369
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLG 178
G+ ++A+++F + +PN T V+VLSAC+ G
Sbjct: 370 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSG 405
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 42 TQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGL----------EIHA 90
T SS P + P NK+ L + T+ S + H+ L ++HA
Sbjct: 53 TTSSAPLDRNPTMNKIKLQTQQLAFQHPVTRNFDTQSHSPVHEALLRSGPRLRNLQQVHA 112
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
H+I G + L+ T I A ++F +V PD + +++ SK GF +
Sbjct: 113 HIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSID 172
Query: 151 AI-----DMFCGIDVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSL 191
+ +F G P +N T SV+ AC+ L + +LGK IH+H +
Sbjct: 173 TVLFYRRMLFSG---APQSNYTFTSVIKACADLSALRLGKEIHSHVM 216
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 108/183 (59%), Gaps = 4/183 (2%)
Query: 29 PQPHILNTLLKLLTQS-STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
P + +L+K ++S + ++ Y++M+ S ++YTFT +K+C+ A + G
Sbjct: 73 PDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRV 132
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H HV+ +G D+++Q +L+ Y D+ +A ++F+ + +V W ++ISG + GF
Sbjct: 133 VHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGF 192
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
KEAI +F + V+P++ T VSVLSAC+ LG+ LG +H + + N + N++L +
Sbjct: 193 AKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTS 252
Query: 205 VLD 207
+++
Sbjct: 253 LIN 255
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KI + I+ N+++ Q+ + AI L+++M + TF L AC+ A
Sbjct: 171 KIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSL 230
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H +++ G ++ + SL++ Y+ ++ A ++F+S+ +VV WT +ISG
Sbjct: 231 GCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGT 290
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G+ +A+++F + + PN+ T V+VLSAC+ G G+ + A S+R
Sbjct: 291 NGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFA-SIRE 341
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC- 145
++HAH+I G+ + LL+ I QIF +V PD +T++I SK
Sbjct: 30 QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSH 89
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
F ++ + + +V P+ T SV+ +C+ L + K G+ +H H L
Sbjct: 90 NFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVL 138
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILNTLLKLLTQSSTPQ-NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
++ + +T+++ +SS + NAI YN ML S N Y F LKAC+ G
Sbjct: 69 RVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLG 128
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSK 144
+H ++K+G DIF+QN+++H Y A ++F+ + D VTWT +I G ++
Sbjct: 129 KAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYAR 188
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G A+ +F + + P+ T+VSVLSAC+ LG+ +LGK I ++ + + L
Sbjct: 189 LGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVEL 248
Query: 202 DNAVLD 207
NA++D
Sbjct: 249 SNALVD 254
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ KM + T L AC+ A + G I +++ K L + + N+L+
Sbjct: 194 GAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALV 253
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNAN 165
+ D+ A +F ++ +V+WT++I GL+ G EA+ +F + P
Sbjct: 254 DMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDI 313
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ +LSACS G + G+ + R
Sbjct: 314 AFIGLLSACSHSGLVERGRQYFSEMTRQFG 343
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ P + + ++ LS+ G EA++ + ++PN +++SAC G KLG++I
Sbjct: 344 IVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESIS 403
Query: 188 AHSLRN--LNENNIIL 201
+RN ++E+N +L
Sbjct: 404 KQLIRNEPMHESNYVL 419
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + NT+++ L ++ P+ A Y +M +++T++ +K C + G
Sbjct: 11 IENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLG 70
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH +V+K+G +F++N+L+H Y KDI +A +F + +V W TII C
Sbjct: 71 KQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYC 130
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G +KEAI++F + +KP+ T V LSAC++LG +G+ +H+
Sbjct: 131 GRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHS 176
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 6/187 (3%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
FK + ++P+ +++ NT++ + AI L+ +ML + TF
Sbjct: 99 FKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVT 158
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC+ G +H+ + G + + + NSL+ Y + +A++IFN + ++
Sbjct: 159 LSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNI 218
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHA 188
V+W T+I GL+ G EA+++F + + PN T + VL ACS G + G+
Sbjct: 219 VSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFD 278
Query: 189 HSLRNLN 195
R+ N
Sbjct: 279 IMRRDYN 285
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 117/201 (58%), Gaps = 11/201 (5%)
Query: 11 PTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTF 69
P +S+ +++ ++I K I NTL++ + +A LY +M ++ + +T+
Sbjct: 67 PPMSYA--HKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTY 124
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+KA + + G IH+ VI+ G I++QNSLLH Y D+ SA+++F+ +
Sbjct: 125 PFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE 184
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
D+V W ++I+G ++ G +EA+ ++ ++ +KP+ T+VS+LSAC+ +G+ LGK +
Sbjct: 185 KDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 187 HAHSL-----RNLNENNIILD 202
H + + RNL+ +N++LD
Sbjct: 245 HVYMIKVGLTRNLHSSNVLLD 265
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N+++ ++ P+ A+ LY +M + + +T L AC+ A
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++IK G ++ N LL Y + A +F+ +V + V+WT++I GL+
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 145 CGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLG 183
GF KEAI++F ++ + P T V +L ACS G K G
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343
Score = 43.9 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 24/173 (13%)
Query: 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIF 102
S T +P+ K +N +Y + T K +IHA I++G + D
Sbjct: 5 SETSVLLLPMVEKCINLLQTYGVSSIT-------------KLRQIHAFSIRHGVSISDAE 51
Query: 103 IQNSLLHFYVTVKD---IFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKEAIDMF--- 155
+ L+ + V++ + AH++F+ + P +V W T+I G ++ G A ++
Sbjct: 52 LGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREM 111
Query: 156 --CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
G+ V+P+ +T ++ A +++ +LG+ IH+ +R+ + I + N++L
Sbjct: 112 RVSGL-VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLL 163
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 36/229 (15%)
Query: 16 KQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+ L+ + I+ +P P N TL++ + + P +I ++ KML S ++ T+ +
Sbjct: 61 RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA S + G+ +H H++K GH D FIQNSL+H Y + +DI SA ++F+ + ++V
Sbjct: 121 KATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLV 180
Query: 134 TWTTIISGLSKCG-------------------------------FHKEAIDMFCGIDVK- 161
TW ++ G +KCG + EA+ +F +
Sbjct: 181 TWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDG 240
Query: 162 PNAN--TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
P AN TLVS L AC+ LG+ + G+ +H + + N I+L +++D
Sbjct: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDM 289
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ +L+ + A+ L+ +M N T AL AC+ A + G
Sbjct: 205 MPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHG 264
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN--SVVFPDVVTWTTIISGLS 143
+H ++++ I +Q SL+ Y I A +F S+ DV+ W II GL+
Sbjct: 265 RMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLA 324
Query: 144 KCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLG 178
G KEA+++FC + + P+ T + +LS C+ G
Sbjct: 325 THGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGG 362
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 36/229 (15%)
Query: 16 KQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+ L+ + I+ +P P N TL++ + + P +I ++ KML S ++ T+ +
Sbjct: 61 RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA S + G+ +H H++K GH D FIQNSL+H Y + +DI SA ++F+ + ++V
Sbjct: 121 KATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLV 180
Query: 134 TWTTIISGLSKCG-------------------------------FHKEAIDMFCGIDVK- 161
TW ++ G +KCG + EA+ +F +
Sbjct: 181 TWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDG 240
Query: 162 PNAN--TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
P AN TLVS L AC+ LG+ + G+ +H + + N I+L +++D
Sbjct: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDM 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ +L+ + A+ L+ +M N T AL AC+ A + G
Sbjct: 205 MPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHG 264
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLS 143
+H ++++ I +Q SL+ Y I A +F + DV+ W II GL+
Sbjct: 265 RMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLA 324
Query: 144 KCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLG 178
G KEA+++FC + + P+ T + +LS C+ G
Sbjct: 325 THGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGG 362
>gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 105/218 (48%), Gaps = 46/218 (21%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL + N + L+ ML + N +TF +KA +L+ G +H VIK
Sbjct: 55 NTLTRAYLNFGQTYNTVYLFTLMLAHQTPPNSHTFPSLIKAATLSFP-SIGTSLHTQVIK 113
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP------------------------ 130
G L D F+Q SLL FY + +++AH++F+ ++ P
Sbjct: 114 RGVLCDPFVQTSLLAFYSQIGCLYNAHKVFDGILHPWIVEYNAMLDAYAKNNDMGSAILL 173
Query: 131 -------DVVTWTTIISGLSKCGFHKEAIDMF----------CGIDVKPNANTLVSVLSA 173
DVV+WTT+ISG S+ G +EAI+ F G+ VKPN T VSVLS+
Sbjct: 174 FKRMLKRDVVSWTTVISGFSRSGLFREAINFFRVMIAHEDVSLGL-VKPNEATYVSVLSS 232
Query: 174 CSSL---GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
C+SL GS LGK +H +RN + + A++DF
Sbjct: 233 CASLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDF 270
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 65 NHYTFTQALKACSLAHAHQK---GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
N T+ L +C+ G ++H +I+ + +FI +L+ FY V + SA
Sbjct: 222 NEATYVSVLSSCASLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDFYGKVGCLNSAI 281
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 175
++FNS+ + +W +IS L+ G K+A+DMF ++ K PN T V VL+AC+
Sbjct: 282 RVFNSMTIKQICSWNAMISCLANNGREKQALDMFEMMEEKGPSPNEVTFVVVLTACT 338
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 101/186 (54%), Gaps = 3/186 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ +P + N+++K ++ P + + Y +ML+ S ++YTFT +K+C+ A + G
Sbjct: 67 VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIG 126
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H H + G D ++Q +L+ FY D+ A Q+F+ + +V W +++SG +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQN 186
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G EAI +F + +P++ T VS+LSAC+ G+ LG +H + + + N+ L
Sbjct: 187 GLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLG 246
Query: 203 NAVLDF 208
A+++
Sbjct: 247 TALINL 252
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 10/169 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ I+ N+L+ Q+ AI ++ +M + TF L AC+ A
Sbjct: 167 RMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSL 226
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++I G ++ + +L++ Y D+ A ++F+ + +V WT +IS
Sbjct: 227 GSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGT 286
Query: 145 CGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
G+ ++A+++F CG PN T V+VLSAC+ G + G++++
Sbjct: 287 HGYGQQAVELFNKMEDDCG--PIPNNVTFVAVLSACAHAGLVEEGRSVY 333
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++HAH+I G+ + L+ + + I H +F SV PD + ++I SK
Sbjct: 27 QVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLR 86
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ + + +V P+ T SV+ +C+ L + ++GK +H H++
Sbjct: 87 LPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV 134
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 9 LKPTLSFKQLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
L T + LNQI+A I+ P N +++ T+ +PQNA+ +Y ML
Sbjct: 34 LSNTTRIRDLNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGV 93
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ YT LKA S + A Q G ++H++ IK G + + ++ ++ Y D SAH+
Sbjct: 94 LPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHK 153
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK-----PNANTLVSVLSACSSL 177
+F+ P + +W +ISGLS+ G +AI +F +D+K P+ T+VSV+ AC S+
Sbjct: 154 VFDENHEPKLGSWNALISGLSQGGLAMDAIVVF--VDMKRHGFEPDGITMVSVMCACGSI 211
Query: 178 GSRKLGKAIHAHSLR-NLNENNIIL-DNAVLD 207
G L +H + + NE +IL N+++D
Sbjct: 212 GDLYLALQLHKYVFQAKTNEWTVILMSNSLID 243
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P+ N L+ L+Q +AI ++ M + T + AC L++
Sbjct: 161 PKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIGDLYLALQL 220
Query: 89 HAHVI--KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
H +V K I + NSL+ Y + A+++F ++ +V +WT++I G + G
Sbjct: 221 HKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHG 280
Query: 147 FHKEAIDMF-CGID--VKPNANTLVSVLSACSSLGSRKLGK 184
KEA+ F C + VKPN T + VLSAC G+ + G+
Sbjct: 281 HAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGR 321
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + S P +A+ LY M++ N YTF LK+C+ A +
Sbjct: 21 ETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASK 80
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN------------------ 125
+GL+IH HV+K G+ D+++ SL+ YV + + AH++F+
Sbjct: 81 EGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYA 140
Query: 126 -------------SVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVS 169
+ DVV+W +ISG + G +KEA+++F +V+P+ +T+V+
Sbjct: 141 SRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVT 200
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SA + GS +LG+ +H+ + +N+ + NA++DF
Sbjct: 201 VISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDF 239
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ T + + A+ L+ +ML S N T L AC+ A G IH ++ K
Sbjct: 265 NILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDK 324
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +AHQ+FNS++ + W +I G + G A
Sbjct: 325 RLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAF 384
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F + ++KP+ T V +LSACS G LG+ H R++ N
Sbjct: 385 DIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGR----HIFRSMTHN 428
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T + A + + + + G ++H+ +
Sbjct: 164 NAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIAD 223
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ FY ++ +A +F + + DV++W +I G + +KEA+ +
Sbjct: 224 HGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLL 283
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++S+L AC+ LG+ +G+ IH +
Sbjct: 284 FQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVY 321
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 5/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P I NT+++ +++ P+ A Y +M + +TF+ LK C G
Sbjct: 48 IGDPDAFIFNTMIRGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLG 107
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H +K G +F++N+L+H Y T KDI ++ Q+F + P++V W II C
Sbjct: 108 RLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSC 167
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII-L 201
G EA++MF + ++P+ T V +LSACS+LG+ G+ +H+ + N+ I +
Sbjct: 168 GKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHS-CISNIGHGCITEV 226
Query: 202 DNAVLD 207
+N++LD
Sbjct: 227 NNSLLD 232
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
+FK + +IP P ++ N ++ A+ ++++ML + TF
Sbjct: 135 TFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVV 194
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L ACS A G +H+ + GH + NSLL Y + A +IFN + +
Sbjct: 195 ILSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKN 254
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLG 178
VTW T+I GL+ G+ EA+ +F + + P+ T + VLSACS G
Sbjct: 255 TVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACSHGG 305
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + NT+++ L ++ P+ A Y +M +++T++ +K C + G
Sbjct: 111 IENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLG 170
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH +V+K+G +F++N+L+H Y KDI +A +F + +V W TII C
Sbjct: 171 KQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYC 230
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G +KEAI++F + +KP+ T V LSAC++LG +G+ +H+
Sbjct: 231 GRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHS 276
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 6/187 (3%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
FK + ++P+ +++ NT++ + AI L+ +ML + TF
Sbjct: 199 FKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVT 258
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC+ G +H+ + G + + + NSL+ Y + +A++IFN + ++
Sbjct: 259 LSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNI 318
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHA 188
V+W T+I GL+ G EA+++F + + PN T + VL ACS G + G+
Sbjct: 319 VSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFD 378
Query: 189 HSLRNLN 195
R+ N
Sbjct: 379 IMRRDYN 385
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 73 LKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIFNSVV 128
K C S+ H Q +HAHVI+ G ++F+ ++ F V + S A ++F +
Sbjct: 58 FKQCESMKHLEQ----LHAHVIQTGLEQNLFVMGKIIVF-CAVSECGSMDYALRVFGKIE 112
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLGSRKLGKA 185
PD W T+I GL + ++A + + + VK T ++ C LGS LGK
Sbjct: 113 NPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQ 172
Query: 186 IHAHSLRNLNENNIILDNAVL 206
IH + L++ E ++ + N ++
Sbjct: 173 IHCNVLKHGLEEHVFVRNTLV 193
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 67/217 (30%), Positives = 114/217 (52%), Gaps = 34/217 (15%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P I NT+ + SS P +A+ LY M++ N YTF LKAC+ + A ++G
Sbjct: 63 IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREG 122
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVT------VKDIF--------------------- 118
+IH HV+K G D+++ SL+ YV + +F
Sbjct: 123 QQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASN 182
Query: 119 ----SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVL 171
SA ++F+ + DVV+W +ISG ++ G +KEA+++F +VKP+ +T+V+VL
Sbjct: 183 GYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVL 242
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SAC+ S +LG+ +H+ + +N+ + NA++D
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 279
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ + A+ L+ +M+ + T L AC+ + + + G ++H+ +
Sbjct: 204 NALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDD 263
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y+ ++ +A +F + + DV++W T+I G + +KEA+ +
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 323
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++S+L AC+ LG+ +G+ IH +
Sbjct: 324 FQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY 361
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A G IH ++ K
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDK 364
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +A Q+F+S++ + +W +I G + G A
Sbjct: 365 RLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAF 424
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F + ++P+ T V +LSACS G LG+ H R++ E+
Sbjct: 425 DIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMTED 468
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
IHA +IK G + + + L+ F V + A +F+S+ P+++ W T+ G +
Sbjct: 21 IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHAL 80
Query: 145 CGFHKEAIDMF-CGIDVK--PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
A+ ++ C I + PN+ T +L AC+ + + G+ IH H L+
Sbjct: 81 SSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLK 131
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 42/236 (17%)
Query: 14 SFKQLNQIHAQIIK----------------------------------IPQPHIL--NTL 37
SFKQL QIHAQ+++ IPQP++ N L
Sbjct: 151 SFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNIL 210
Query: 38 LKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ L SS P ++ ++ +ML + P N +TF +KA + G +H IK
Sbjct: 211 IRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTS 270
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F+ NSL+HFY + + A+ +F + D+V+W ++++G + G+ +A+D+
Sbjct: 271 FGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDL 330
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + V PNA T+VSV+SAC+ + LG+ + + RN N+ + NA +D
Sbjct: 331 FERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATID 386
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
N L+ QS P+ A+ ++ ++ S + T L AC+ A G IH ++
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K + + SL+ Y D+ A ++F+S+ DV W+ +I+GL+ G + AI
Sbjct: 504 KKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAI 563
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
++F + VKPN+ T ++L ACS G GK +
Sbjct: 564 ELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 36/209 (17%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q P A+ L+ +M N N T + AC+ G ++ ++ +
Sbjct: 312 NSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDR 371
Query: 95 YGHLHDIFIQNSLLHFYVTV---------------KDIFS----------------AHQI 123
+ ++ + N+ + +V +D+ S A I
Sbjct: 372 NEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDI 431
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSACSSLG 178
F+S+ D+ W +ISG + G KEA+ +F + + +P+ TL+S LSAC+ LG
Sbjct: 432 FDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLG 491
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +G+ IH + + + N L +++D
Sbjct: 492 AMDIGEWIHGYIKKERIQLNRNLATSLID 520
Score = 39.7 bits (91), Expect = 0.77, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA----HQIFNSVVFPDVVTWTTIISGL 142
+IHA +++ LHD + + L F FSA ++F+ + P++ +W +I L
Sbjct: 157 QIHAQMLRTNKLHDPYAASEL--FTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRAL 214
Query: 143 SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ +++ +F + PN T ++ A + +GKA+H +++ ++
Sbjct: 215 ATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDD 274
Query: 199 IILDNAVLDF 208
+ + N+++ F
Sbjct: 275 VFVLNSLIHF 284
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 108/194 (55%), Gaps = 14/194 (7%)
Query: 27 KIPQPH--ILNTLLKLLTQSST-PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
KIP+P + NT+++ S+T NAI + +M +++TF+ LK +
Sbjct: 69 KIPKPDSFLWNTMIRGFGNSTTHSHNAIHFFKRM-QLAHRPDNFTFSFILKIIARLRFVN 127
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G ++H + K+G + +++NSL+H Y +KDI AHQ+F + P++V+W +II
Sbjct: 128 LGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHV 187
Query: 144 KCGFHKEAIDMFC--------GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
CG + EAID+F G++++P+ TLV LSAC ++GS G+ +H+ +N
Sbjct: 188 YCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDGVN 247
Query: 196 E--NNIILDNAVLD 207
+I + NA++D
Sbjct: 248 SFGESISVFNALVD 261
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKML-----NCPSSYNHYT 68
K + H ++ QP+++ N+++ AI L+ KM+ +H T
Sbjct: 159 KDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHAT 218
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIK----YGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
L AC + G ++H+ V +G +F N+L+ Y + A++ F
Sbjct: 219 LVVTLSACGAIGSLDFGRKVHSFVRDGVNSFGESISVF--NALVDMYAKCGAVEEAYETF 276
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSR 180
+++ +VV+W +I G + G +EA+ +F + +P+ T + VL ACS G
Sbjct: 277 SNMKRKNVVSWNVMILGFASHGNGEEALALFTRMLHENVERPDEITFLCVLCACSHGGLV 336
Query: 181 KLGK 184
G+
Sbjct: 337 DEGR 340
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA + G H++ + ++ F +++ A +F+ + PD W T+I G
Sbjct: 30 QIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLWNTMIRGFGNST 89
Query: 147 FHK-EAIDMFCGIDV--KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
H AI F + + +P+ T +L + L LGK +H + EN+ + N
Sbjct: 90 THSHNAIHFFKRMQLAHRPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFENHTYVRN 149
Query: 204 AVL 206
+++
Sbjct: 150 SLI 152
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 13/208 (6%)
Query: 8 SLKPTLSFKQL--NQIHAQIIKIPQPHILNTLLKLLTQSSTPQN--AIPLYNKMLNCPSS 63
S+ +L++ QL ++IH PQ N++++ +QS +P AI YN ML+ +
Sbjct: 443 SVSGSLAYAQLVFHRIHN-----PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHA 497
Query: 64 Y-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ YTF+ LKAC A K E+H +I++G+ D+ + +L+ Y I +AH+
Sbjct: 498 RPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHK 557
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + D+V+W ++IS + G H+EA+ M+ + +V + TLVS+LS+C+ +G+
Sbjct: 558 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 617
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+G +H + NI + NA++D
Sbjct: 618 LHMGVQMHRFAGERRLVENIFVGNALID 645
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + A+ +Y++M ++ +T L +C+ A G+++H +
Sbjct: 571 NSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGE 630
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ +IF+ N+L+ Y + SA IFNS+ DV TW ++I G G EAI
Sbjct: 631 RRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITF 690
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
F + V+PN+ T + +L CS G K G
Sbjct: 691 FGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 722
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Query: 33 ILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+ NTL++ Q+ + A+ LY ML+ N +T+ LKAC+ G +H
Sbjct: 98 LFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGS 157
Query: 92 VIKYGHLHDIFIQNSLLHFY-VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
V+K+G DI +QN+++H Y I SA ++F+ + D VTW+ +I G ++ G E
Sbjct: 158 VVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTE 217
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
A+ +F + +V P+ T+VS+LSAC+ LG+ +LGK I A+ R+ + + NA++D
Sbjct: 218 AVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALID 277
Query: 208 F 208
Sbjct: 278 M 278
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + T L AC+ A + G I A++ ++ + + N+L+
Sbjct: 217 EAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALI 276
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
+ DI A ++F ++ +V+WT++I G++ G +EA +F + V P+
Sbjct: 277 DMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDV 336
Query: 166 TLVSVLSACSSLGSRKLGK 184
+ +LSACS G + G+
Sbjct: 337 AFIGLLSACSHSGLVERGR 355
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 113/197 (57%), Gaps = 12/197 (6%)
Query: 18 LNQIHAQIIKIPQP---HILNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQAL 73
++ H KI +P I NTL++ + +A LY +M ++ + +T+ +
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA + + G IH+ VI+ G I++QNSLLH Y D+ SA+++F+ + D+V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W ++I+G ++ G +EA+ ++ ++ +KP+ T+VS+LSAC+ +G+ LGK +H +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248
Query: 191 L-----RNLNENNIILD 202
+ RNL+ +N++LD
Sbjct: 249 IKVGLTRNLHSSNVLLD 265
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N+++ ++ P+ A+ LY +M + + +T L AC+ A
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++IK G ++ N LL Y + A +F+ +V + V+WT++I GL+
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 145 CGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLG 183
GF KEAI++F ++ + P T V +L ACS G K G
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 87 EIHAHVIKYG-HLHDIFIQNSLLHFYVTVKD---IFSAHQIFNSVVFP-DVVTWTTIISG 141
+IHA I++G + D + L+ + V++ + AH++F+ + P +V W T+I G
Sbjct: 35 QIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRG 94
Query: 142 LSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G A ++ + V +P+ +T ++ A +++ +LG+ IH+ +R+ +
Sbjct: 95 YAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGS 154
Query: 198 NIILDNAVL 206
I + N++L
Sbjct: 155 LIYVQNSLL 163
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 103/186 (55%), Gaps = 3/186 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ +P + N+++K ++ P + + Y +ML+ S ++YTFT +K+C+ A + G
Sbjct: 67 VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIG 126
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H H + G D ++Q +L+ FY D+ +A Q+F+ + VV W +++SG +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQN 186
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G ++AI +F + +P++ T VS+LSAC+ G+ LG +H + + + N+ L
Sbjct: 187 GLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLG 246
Query: 203 NAVLDF 208
A+++
Sbjct: 247 TALINL 252
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N+L+ Q+ ++AI ++ +M + TF L AC+ A
Sbjct: 167 RMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISL 226
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H +++ G ++ + +L++ Y D+ A ++F+ + +V WT +IS
Sbjct: 227 GSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGT 286
Query: 145 CGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
G+ K+A+D+F CG PN T V+VLSAC+ G + G++++
Sbjct: 287 HGYGKQAVDLFNKMEDDCG--SIPNNVTFVAVLSACAHAGLVEDGRSVY 333
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 87 EIHAHVI--KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
++HAH+I YG + + L+ + + I H +F SV PD + ++I SK
Sbjct: 27 QVHAHLIVTSYGRSRSLLTK--LITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSK 84
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ + + +V P+ T SV+ +C+ L + K+GK +H H++
Sbjct: 85 LRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAV 134
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A +
Sbjct: 92 KTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFK 151
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN------------------ 125
+G +IH HV+K G D+++ SL+ YV + AH++F+
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 126 -------------SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
+ DVV+W +ISG ++ G +KEA+++F + +V+P+ +T+V+
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ GS +LG+ +H + +N+ + NA++D
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 310
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ M+ + T + AC+ + + + G ++H +
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y ++ +A +F + + DV++W T+I G + +KEA+ +
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
F + PN T++S+L AC+ LG+ +G+ IH + + L
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P ++ NTL+ T + + A+ L+ +ML + N T L AC+ A
Sbjct: 326 RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385
Query: 85 GLEIHAHVIKY--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G IH ++ K G + ++ SL+ Y DI +AHQ+FNS++ + +W +I G
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445
Query: 143 SKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+ G + D+F I ++P+ T V +LSACS G LG+ I
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 40/246 (16%)
Query: 3 VNGLKSLKPTLSFKQLNQIHAQIIKI---------------------------------- 28
V GL LK S ++ Q+HA I+K+
Sbjct: 31 VQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQI 90
Query: 29 --PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P NT+++ S + A+ LY +ML +++T+ LKACSL A ++G+
Sbjct: 91 EEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGV 150
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHAHV K G D+F+QN L++ Y I A +F + V +W++II +
Sbjct: 151 QIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVE 210
Query: 147 FHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
E + DM + + LVS LSAC+ LGS G+ IH LRN++E N+ +
Sbjct: 211 MWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVK 270
Query: 203 NAVLDF 208
+++D
Sbjct: 271 TSLIDM 276
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC+ + G IH +++ ++ ++ SL+ YV + +F ++ +
Sbjct: 238 ALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKN 297
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++T II+GL+ G +EA+ +F + + P+ V VLSACS G
Sbjct: 298 RYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAG 347
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +L+ + +S + + + ++ M + N Y++T + ++ ++ L + + +
Sbjct: 269 VKTSLIDMYVKSGSLEKGLCVFQNM----AQKNRYSYTVIITGLAIHGRGREALSVFSDM 324
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGF 147
++ G D + +L + Q FN + F P + + ++ + + G
Sbjct: 325 LEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGM 384
Query: 148 HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
K A D+ + +KPN S+LSAC + ++G+ I A ++ LN++N
Sbjct: 385 LKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGE-IAAENIFKLNQHN 434
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 13/208 (6%)
Query: 8 SLKPTLSFKQL--NQIHAQIIKIPQPHILNTLLKLLTQSSTPQN--AIPLYNKMLNCPSS 63
S+ +L++ QL ++IH PQ N++++ +QS +P AI YN ML+ +
Sbjct: 50 SVSGSLAYAQLVFHRIHN-----PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHA 104
Query: 64 Y-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ YTF+ LKAC A K E+H +I++G+ D+ + +L+ Y I +AH+
Sbjct: 105 RPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHK 164
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + D+V+W ++IS + G H+EA+ M+ + +V + TLVS+LS+C+ +G+
Sbjct: 165 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 224
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+G +H + NI + NA++D
Sbjct: 225 LHMGVQMHRFAGERRLVENIFVGNALID 252
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + A+ +Y++M ++ +T L +C+ A G+++H +
Sbjct: 178 NSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGE 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ +IF+ N+L+ Y + SA IFNS+ DV TW ++I G G EAI
Sbjct: 238 RRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITF 297
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
F + V+PN+ T + +L CS G K G
Sbjct: 298 FGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 329
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHF-YVTVKDIFSAHQ-IFNSVVFPDVVTWTTIISGLSK 144
+IHAH++ G+ H+ I LL+F V+V + Q +F+ + P W ++I G S+
Sbjct: 23 KIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQ 82
Query: 145 --CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+AI M +P+ T +L AC + +H +R + +
Sbjct: 83 SPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQD 142
Query: 199 IIL 201
++L
Sbjct: 143 VVL 145
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 13/208 (6%)
Query: 8 SLKPTLSFKQL--NQIHAQIIKIPQPHILNTLLKLLTQSSTPQN--AIPLYNKMLNCPSS 63
S+ +L++ QL ++IH PQ N++++ +QS +P AI YN ML+ +
Sbjct: 68 SVSGSLAYAQLVFHRIHN-----PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHA 122
Query: 64 Y-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ YTF+ LKAC A K E+H +I++G+ D+ + +L+ Y I +AH+
Sbjct: 123 RPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHK 182
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + D+V+W ++IS + G H+EA+ M+ + +V + TLVS+LS+C+ +G+
Sbjct: 183 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 242
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+G +H + NI + NA++D
Sbjct: 243 LHMGVQMHRFAGERRLVENIFVGNALID 270
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + A+ +Y++M ++ +T L +C+ A G+++H +
Sbjct: 196 NSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGE 255
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ +IF+ N+L+ Y + SA IFNS+ DV TW ++I G G EAI
Sbjct: 256 RRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITF 315
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
F + V+PN+ T + +L CS G K G
Sbjct: 316 FGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 347
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHF-YVTVKDIFSAHQ-IFNSVVFPDVVTWTTIISGLSK 144
+IHAH++ G+ H+ I LL+F V+V + Q +F+ + P W ++I G S+
Sbjct: 41 KIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQ 100
Query: 145 --CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+AI M +P+ T +L AC + +H +R + +
Sbjct: 101 SPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQD 160
Query: 199 IIL 201
++L
Sbjct: 161 VVL 163
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A +
Sbjct: 46 ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 105
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVT------VKDIF------------------- 118
+G +IH HV+K G+ D+++ SL+ YV + +F
Sbjct: 106 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 165
Query: 119 ------SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVS 169
SA ++F+ + DVV+W +ISG ++ G +KEA+++F +V+P+ +T+VS
Sbjct: 166 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 225
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ S +LG+ +H+ + +N+ + NA++D
Sbjct: 226 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 264
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T + AC+ + + + G ++H+ +
Sbjct: 189 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 248
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y+ ++ +A +F + + DV++W T+I G + +KEA+ +
Sbjct: 249 HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 308
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++S+L AC+ LG+ ++G+ IH +
Sbjct: 309 FQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 346
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A + G IH ++ K
Sbjct: 290 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK 349
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + + SL+ Y DI +A Q+F+S++ + +W +I G + G A
Sbjct: 350 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 409
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F + +++P+ T V +LSACS G LG+ H R++ E+
Sbjct: 410 DIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMKED 453
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K P + NT+++ L +AI LY M N++T LKAC+ + G
Sbjct: 74 VKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLG 133
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L+IH+ ++K G+ HD+F++ SLL YV + A ++F+ + +VV+WT II+G
Sbjct: 134 LKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISS 193
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G +EAI F + +KP++ +LV VL+AC+ LG G+ I + + N+ +
Sbjct: 194 GHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA 253
Query: 203 NAVLD 207
++LD
Sbjct: 254 TSLLD 258
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI + K+L + ++ + L AC+ G I ++ G ++F+ SL
Sbjct: 197 REAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSL 256
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
L YV ++ A+ IF+++ D+V+W+T+I G + G ++A+D+F + ++KP+
Sbjct: 257 LDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDC 316
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIILDNAVLD 207
T+V VLSAC++LG+ LG I A SL + NE +N +L A++D
Sbjct: 317 YTMVGVLSACATLGALDLG--IWASSLMDRNEFLSNPVLGTALID 359
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ I++ T+++ + PQ A+ L+ +M + + YT L AC+ A G
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG 335
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ + + + L + + +L+ Y + A +IF ++ D V W ++ GLS
Sbjct: 336 IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMN 395
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G K +F ++ ++P+ NT + +L C+ G G+
Sbjct: 396 GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGR 437
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHA +++ D ++ N +L + + +F+ V P++ W T+I GL
Sbjct: 35 IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDC 94
Query: 148 HKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+AI ++ G PN T+ VL AC+ +LG IH+ ++ ++++ + +
Sbjct: 95 FDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTS 154
Query: 205 VL 206
+L
Sbjct: 155 LL 156
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K P + NT+++ L +AI LY M N++T LKAC+ + G
Sbjct: 74 VKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLG 133
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L+IH+ ++K G+ HD+F++ SLL YV + A ++F+ + +VV+WT II+G
Sbjct: 134 LKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISS 193
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G +EAI F + +KP++ +LV VL+AC+ LG G+ I + + N+ +
Sbjct: 194 GHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA 253
Query: 203 NAVLD 207
++LD
Sbjct: 254 TSLLD 258
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI + K+L + ++ + L AC+ G I ++ G ++F+ SL
Sbjct: 197 REAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSL 256
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
L YV ++ A+ IF+++ D+V+W+T+I G + G ++A+D+F + ++KP+
Sbjct: 257 LDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDC 316
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIILDNAVLD 207
T+V VLSAC++LG+ LG I A SL + NE +N +L A++D
Sbjct: 317 YTMVGVLSACATLGALDLG--IWASSLMDRNEFLSNPVLGTALID 359
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ I++ T+++ + PQ A+ L+ +M + + YT L AC+ A G
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG 335
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ + + + L + + +L+ Y + A +IF ++ D V W ++ GLS
Sbjct: 336 IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMN 395
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G K +F ++ ++P+ NT + +L C+ G G+
Sbjct: 396 GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGR 437
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHA +++ D ++ N +L + + +F+ V P++ W T+I GL
Sbjct: 35 IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDC 94
Query: 148 HKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+AI ++ G PN T+ VL AC+ +LG IH+ ++ ++++ + +
Sbjct: 95 FDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTS 154
Query: 205 VL 206
+L
Sbjct: 155 LL 156
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
+IP PH N LL+ L++SS P+ I LY+ + + + + ++F LKA S A
Sbjct: 79 QIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFN 138
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
GLEIH K G + D FIQ L+ Y + + I A +F+ + PD V W II G
Sbjct: 139 HGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYC 198
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ G + +A+ +F + D+KP++ L +VLSAC G+ G+ IH
Sbjct: 199 QNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIH 245
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+S PQ A+ L+++ML S + T + ACS A + IH +V + G +
Sbjct: 331 ESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALS 390
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGID 159
+ N+L+ Y ++ A ++F ++ +V++W+++I+ + G AI +F ++
Sbjct: 391 VNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVN 450
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
++PN T + VL AC G + G+ + + +NE+ I
Sbjct: 451 IEPNGVTFIGVLYACGHAGLVEEGEKLFSSM---INEHGI 487
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 40/216 (18%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P N ++ Q+ +A+ L+ M + + L AC A G I
Sbjct: 185 PDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTI 244
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVT----------------------------------V 114
H V G+ D +Q +L++ Y V
Sbjct: 245 HEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMV 304
Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVL 171
KD A IF+ ++ D+V W+ +ISG ++ +EA+ +F + K P+ T++SV+
Sbjct: 305 KD---ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVI 361
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
SACS +G+ IH + R+ + ++NA++D
Sbjct: 362 SACSHVGALAQANWIHTYVDRSGFGRALSVNNALID 397
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 80/269 (29%), Positives = 120/269 (44%), Gaps = 74/269 (27%)
Query: 13 LSFKQLNQIHAQIIKIPQPHI-------------------------------------LN 35
LS +QL +I AQII P P I N
Sbjct: 35 LSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYN 94
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQALKACSLAHAHQKGLEIHAHVI 93
LLK +Q + I +N L P++ N YTFT LKAC+ +G ++H V
Sbjct: 95 ALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVT 154
Query: 94 KYGHLHDIFIQNSLLHFY---------------VTVKDIFS----------------AHQ 122
KYG ++F++NSL+ Y + V+D+ S A
Sbjct: 155 KYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARM 214
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLG 178
+F+ ++ ++V+W+T+ISG ++ + +AI++F + + PN TLVSVLSAC+ LG
Sbjct: 215 VFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLG 274
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ LGK IH RN E + L NA+ D
Sbjct: 275 ALDLGKWIHRFIRRNKIEVGLFLGNALAD 303
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+T++ ++ +AI L+ +M + + N T L AC+ A G IH +
Sbjct: 228 STMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIR 287
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ +F+ N+L Y + A +F+ + DV++W+ II GL+ G+ EA +
Sbjct: 288 RNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFN 347
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
F + ++PN + + +L+AC+ G
Sbjct: 348 FFAEMIEDGLEPNDISFMGLLTACTHAG 375
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A +
Sbjct: 49 ETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFK 108
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS----------------- 126
+G +IH HV+K G D+++ SL+ YV + AH++F+
Sbjct: 109 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYA 168
Query: 127 --------------VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
+ DVV+W +ISG ++ G +KEA+++F + +V+P+ +T+V+
Sbjct: 169 SRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 228
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ GS +LG+ +H+ + +N+ + NA++D
Sbjct: 229 VVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDL 267
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ M+ + T + AC+ + + + G ++H+ +
Sbjct: 192 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 251
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y ++ +A +F + + DV++W T+I G + +KEA+ +
Sbjct: 252 HGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLL 311
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++S+L AC+ LG+ +G+ IH +
Sbjct: 312 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 349
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML + N T L AC+ A G IH ++ K
Sbjct: 293 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 352
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +AHQ+FNS++ + +W +I G + G +
Sbjct: 353 RLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASF 412
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F + ++P+ T V +LSACS G LG+ H R++ ++
Sbjct: 413 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMTQD 456
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 101/177 (57%), Gaps = 4/177 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL++ T++ A+ + +M + + T L ACS G ++H+++ Y
Sbjct: 182 TLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHY 241
Query: 96 GHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D+F+ N+LL Y+ D+ SA+++F+ + +VVTW +ISGL+ G ++EA+D
Sbjct: 242 IDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDT 301
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + VKP+ TLV VL++C++LG ++GK +HA+ RN + + NA+LD
Sbjct: 302 FRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDM 358
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ ++++S + + N+ML + +T LKA +L ++G +IHA IK
Sbjct: 79 NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + ++++ N+L+ Y I ++F+ D+V+WTT+I +K G + A++
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVLDF 208
F C + ++ + TLV VLSACS+LG LG+ +H++ ++ + ++ + NA+LD
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDM 257
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
L LN + ++P +++ N ++ L + A+ + M + + T
Sbjct: 259 LKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLV 318
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L +C+ + G +HA++ + L D F+ N+LL Y I A ++F S+
Sbjct: 319 GVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRR 378
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGK 184
DV ++T +I GL+ G A +F + ++PN T + +L ACS G GK
Sbjct: 379 DVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGK 435
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 14/210 (6%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTP-QNAIPLYNKMLNCPSSY 64
+L P +F +I +QI P P I N++++ + P + I L+ M+ Y
Sbjct: 33 ALSPFGNFDYARKIFSQI---PNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVG--KGY 87
Query: 65 -NHYTFTQA--LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
N TFT A LKACS+ A ++G +IHA +++ G ++Q+SL++FY ++I A
Sbjct: 88 PNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIAR 147
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLG 178
++F+ + ++V W+ ++SG ++ G EA+ MF + V +P+ +LV VLSAC+ +G
Sbjct: 148 KVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVG 207
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +GK +HA+ + + ++ L+ A+++
Sbjct: 208 ALDIGKWVHAYIKKRMIHVDLELNTALINM 237
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSS------------TPQN- 49
LK+ ++ ++ QIHAQI++ P++ ++L+ ++ T +N
Sbjct: 99 LKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNL 158
Query: 50 ------------------AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
A+ ++ +M + + L AC++ A G +HA+
Sbjct: 159 VCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAY 218
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ K D+ + +L++ Y I A +IF+ + D W+++I GL+ G ++A
Sbjct: 219 IKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDA 278
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
+++F ++ KPN T + +LSAC+ G GK
Sbjct: 279 LNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGK 314
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+PH+ N+L++ + S P + LY M S N+YTF LK+ + G
Sbjct: 70 IPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGG 129
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H HV+K GH D+++QN+L+ Y + + ++F+ ++ DVV+WT +I G
Sbjct: 130 QSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVS 189
Query: 146 GFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+A+ +F G+D PN T+V+ L+AC+S G+ ++G IH E +++
Sbjct: 190 FMLDDALIVFEQMQYAGVD--PNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVV 247
Query: 201 LDNAVLD 207
L A++D
Sbjct: 248 LGTALID 254
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+A+ ++ +M N T AL AC+ A + G+ IH V D+ + +L
Sbjct: 193 DDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTAL 252
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL--SKCGFHKEAIDMFCGID---VKP 162
+ Y I A +F ++ +V TW I+GL +KCG +EAI F +D V+
Sbjct: 253 IDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCG--EEAIAWFKRMDEEGVEA 310
Query: 163 NANTLVSVLSACSSLGSRKLGKAI 186
+ TLV+VLSACS G G+ I
Sbjct: 311 DDVTLVAVLSACSHSGLVNSGRQI 334
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 111/209 (53%), Gaps = 5/209 (2%)
Query: 4 NGLKSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCP 61
N + S T F +N IP+P + NT+LK ++ +P+ + +Y ML
Sbjct: 24 NKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKND 83
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+ YT+ +K A + G E+H HV+KYG ++F+QN+L++ Y A
Sbjct: 84 VLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMAR 143
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
IF+ DVVTW +IS ++ + + +F ++ K P++ TLVSVLSACS L
Sbjct: 144 GIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLK 203
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ G+ +H + ++ ++N+I++NA++D
Sbjct: 204 DLESGQKVHKYISDHVVQSNLIVENALID 232
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+++M + +T L AC+ A + G + ++ K +D ++ N+L
Sbjct: 303 KEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNAL 362
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ A IFNS+ PD TWT +I GL+ G+ +EA+DMF + V P+
Sbjct: 363 IDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVTPDE 422
Query: 165 NTLVSVLSACSSLGSRKLGK 184
T V VL AC+ G G+
Sbjct: 423 ITYVGVLCACTHTGMVDEGR 442
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 37/181 (20%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
PSS T L ACS + G ++H ++ + ++ ++N+L+ Y ++ A
Sbjct: 187 PSSV---TLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVA 243
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCG-------------------------------FHK 149
IF S+ DV++WT I++G + G K
Sbjct: 244 LGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFK 303
Query: 150 EAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
EA+ +F + +VKP+ T+VS+L+AC+ LG+ +LG+ + + +N +N+ + NA++
Sbjct: 304 EALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALI 363
Query: 207 D 207
D
Sbjct: 364 D 364
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IH+ IK G + IQN + F T + D+ A Q+F+++ P V W T++ G S+
Sbjct: 6 QIHSQTIKTGTICKPIIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTMLKGYSR 65
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
K + M+ + DV P+ T ++ + + GK +H H ++ +N+ +
Sbjct: 66 IDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNVFV 125
Query: 202 DNAVLD 207
NA+++
Sbjct: 126 QNALIN 131
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+PH+ N+L++ + S P + LY M S N+YTF LK+ + G
Sbjct: 70 IPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGG 129
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H HV+K GH D+++QN+L+ Y + + ++F+ ++ DVV+WT +I G
Sbjct: 130 QSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVS 189
Query: 146 GFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+A+ +F G+D PN T+V+ L+AC+S G+ ++G IH E +++
Sbjct: 190 FMLDDALIVFEQMQYAGVD--PNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVV 247
Query: 201 LDNAVLD 207
L A++D
Sbjct: 248 LGTALID 254
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+A+ ++ +M N T AL AC+ A + G+ IH V D+ + +L
Sbjct: 193 DDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTAL 252
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL--SKCGFHKEAIDMFCGID---VKP 162
+ Y I A +F ++ +V TW I+GL +KCG +EAI F +D V+
Sbjct: 253 IDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCG--EEAIAWFKRMDEEGVEA 310
Query: 163 NANTLVSVLSACSSLGSRKLGKAI 186
+ TLV+VLSACS G G+ I
Sbjct: 311 DDVTLVAVLSACSHSGLVNSGRQI 334
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A +
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 120
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVT------VKDIF------------------- 118
+G +IH HV+K G+ D+++ SL+ YV + +F
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 180
Query: 119 ------SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVS 169
SA ++F+ + DVV+W +ISG ++ G +KEA+++F +V+P+ +T+VS
Sbjct: 181 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 240
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ S +LG+ +H+ + +N+ + NA++D
Sbjct: 241 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 279
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T + AC+ + + + G ++H+ +
Sbjct: 204 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 263
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y+ ++ +A +F + + DV++W T+I G + +KEA+ +
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 323
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++S+L AC+ LG+ ++G+ IH +
Sbjct: 324 FQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 361
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A + G IH ++ K
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK 364
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + + SL+ Y DI +A Q+F+S++ + +W +I G + G A
Sbjct: 365 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 424
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F + +++P+ T V +LSACS G LG+ H R++ E+
Sbjct: 425 DIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR----HIFRSMKED 468
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ + + A+ LY++M S+ ++YT++ L AC+ + +G I+ +I
Sbjct: 81 NVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEII 140
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D+ ++N+L++ ++ I A ++F+ + ++V+WT ++SG ++ GF EA+
Sbjct: 141 SKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALR 200
Query: 154 MFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
MF G DVK N T+ SVL AC+ L + GK IH + +R + I++ NA++D
Sbjct: 201 MFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDM 258
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 38/205 (18%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q A+ ++ +M N+ T L AC+ Q+G EIH ++I+ G I
Sbjct: 190 AQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGI 249
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CG 157
+ N+L+ Y I SA ++F+ ++ DVV+W I+G ++ G E +++F C
Sbjct: 250 VVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCA 309
Query: 158 ---ID-------------------------------VKPNANTLVSVLSACSSLGSRKLG 183
ID VKPN+ T+ SVLSAC+++ + + G
Sbjct: 310 GLKIDVITWNTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITIASVLSACAAVSALQEG 369
Query: 184 KAIHAHSLRNLNENNIILDNAVLDF 208
K IH R+ +++I + NA++D
Sbjct: 370 KRIHDLVNRSECKSDICVGNALIDM 394
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA +LA A Q +HAH++ G L ++ LL+ YV + A F+++ DV
Sbjct: 23 KAKTLAEAKQ----VHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTKGDVF 78
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
W +I G K G +EA++++ + P+ T SVL+AC+ L S GK I+
Sbjct: 79 PWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDE 138
Query: 190 SLRNLNENNIILDNAVLDF 208
+ E ++I++NA+++
Sbjct: 139 IISKGCEMDVIVENALINM 157
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 46/232 (19%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFT 70
LSF ++ + Q +P I N +++ +++ + Q ++ L+++ML P+S + YTFT
Sbjct: 103 LSFARI--VFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFT 160
Query: 71 QALKACSLAHAHQKGL--EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
ACS H +G +H V+K G+ DIF+ NSL++ Y + A ++F+ +
Sbjct: 161 FVFTACS-RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219
Query: 129 FPDVVTWTTIISGLSKCG-------------------------------FHKEAI----D 153
DV+TWT+++ G + G F+ EA+ D
Sbjct: 220 QRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFND 279
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
M C +VKPN LVS+LSAC+ LG+ GK IH + +++N I+L + +
Sbjct: 280 MLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVY----IDKNRILLSSNI 327
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 53 LYNKMLNCPSSY--------NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
YN+ L C + N L AC+ A +G IH ++ K L I
Sbjct: 269 FYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNIS 328
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
+L+ Y I A ++F+ + D++TWT++ISGLS G E + F + K
Sbjct: 329 TALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFK 388
Query: 162 PNANTLVSVLSACSSLGSRKLGKAI 186
P+ TL+ VL+ CS G + G +I
Sbjct: 389 PDDITLLGVLNGCSHSGLVEEGLSI 413
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA-CSLAHAH 82
+I ++ +P + + L ++ +++ P + PS H TF Q LK SL
Sbjct: 16 KIPRLQEPFYVQSPLVYISSNTSSAIWEPSGTSSFSLPS---HSTFVQLLKKRPSLTQIK 72
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISG 141
Q IHA V+ +G + + L+H Y+ +++ A +F+ P + W +I
Sbjct: 73 Q----IHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQA 128
Query: 142 LSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGS-RKLGKAIHAHSLRNLN 195
SK +E++ +F G + T V +ACS + R G+ +H +++
Sbjct: 129 YSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGY 188
Query: 196 ENNIILDNAVLD 207
E++I + N++++
Sbjct: 189 ESDIFVGNSLVN 200
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 98/184 (53%), Gaps = 4/184 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLE 87
P N ++ S P+ A+ LY ++L C + ++YT+ KAC+ + G E
Sbjct: 41 PNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSE 100
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
I HV+ G DIF+ N+++H V+ D+ A ++F+ D+V+W ++I+G + G+
Sbjct: 101 ILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 160
Query: 148 HKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
EA++ + + V KP+ T++ V+S+C+ L LG+ H + N + + L NA
Sbjct: 161 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 220
Query: 205 VLDF 208
++D
Sbjct: 221 LMDM 224
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + A+ Y +M + T + +C+ G E H ++ +
Sbjct: 149 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEE 208
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--------------FPD--VVTWTTI 138
G + + N+L+ Y+ ++ SA ++F+S+ PD VV W +
Sbjct: 209 NGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAM 268
Query: 139 ISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I G KEA+ +F +++ P+ T+VS LSACS LG+ +G IH + ++
Sbjct: 269 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL 328
Query: 196 ENNIILDNAVLDF 208
N+ L A++D
Sbjct: 329 SLNVALGTALIDM 341
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P ++ N ++ ++ + A+ L+N+M + + T L ACS A
Sbjct: 256 EMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDV 315
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ IH ++ K+ ++ + +L+ Y I A Q+F + + +TWT IISGL+
Sbjct: 316 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 375
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G AI F + V P+ T + +LSAC G + G+
Sbjct: 376 HGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 418
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P NT+++ S + A+ LY +ML +++T+ LKACSL A ++G
Sbjct: 91 IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG 150
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++IHAHV K G D+F+QN L+ Y I A +F + V +W++II +
Sbjct: 151 VQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASV 210
Query: 146 GFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
E + DM + + LVS LSAC+ LGS LG+ IH LRN++E N+++
Sbjct: 211 EMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVV 270
Query: 202 DNAVLDF 208
+++D
Sbjct: 271 KTSLIDM 277
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFS 119
+ +N + LK C + ++ ++HAH++K G +D F ++L+ + +
Sbjct: 27 AKFNEQGWLSLLKRCK---SMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEY 83
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A IF+ + P + T+I G +EA+ ++ + ++P+ T VL ACS
Sbjct: 84 ACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSL 143
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
L + K G IHAH + E ++ + N ++
Sbjct: 144 LVALKEGVQIHAHVFKAGLEVDVFVQNGLI 173
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC+ + G IH +++ ++ ++ SL+ YV + +F ++ +
Sbjct: 239 ALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKN 298
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++T +I+GL+ G +EA+ +F + + P+ V VLSACS G
Sbjct: 299 RYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAG 348
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +L+ + + + + + ++ M + N Y++T + ++ ++ + + + +
Sbjct: 270 VKTSLIDMYVKCGSLEKGLCVFQNM----AHKNRYSYTVMIAGLAIHGRGREAVRVFSDM 325
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGF 147
++ G D + +L + Q FN + F P + + ++ + + G
Sbjct: 326 LEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGM 385
Query: 148 HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
KEA D+ + +KPN S+LSAC + ++G+ I A ++ LN++N
Sbjct: 386 LKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGE-IAAENIFRLNKHN 435
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
++ ++L++ + AI ++ +++ + +++TF L AC+ + A +G ++H
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGA 164
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++K G D+F++NSL+HFY +I ++F+ + +VV+WT++I G +K G +KEA
Sbjct: 165 IVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEA 224
Query: 152 IDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +F + ++PN+ T+V V+SAC+ L +LG+ + E N ++ NA++D
Sbjct: 225 VSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVD 283
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L Q S + AI L+ M + + + T AC A IH ++ K
Sbjct: 442 NTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKK 501
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ + +L+ + D SA Q+FN +V DV WT I ++ G AI++
Sbjct: 502 KDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIEL 561
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ V++L+A S G
Sbjct: 562 FDEMLQQGIKPDGVVFVALLTALSHGG 588
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VK 161
NSL+ +V D+ SA +IF+++ D+V+W T+I L + KEAI++F + +
Sbjct: 411 NSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGIT 470
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ T+V V SAC LG+ L K IH + + ++ L A++D
Sbjct: 471 ADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVD 516
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ +M+ N T + AC+ Q G ++ + + + + N+L
Sbjct: 222 KEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNAL 281
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y+ I A +IF+ V ++V + TI+S + G +E + + + +P+
Sbjct: 282 VDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDR 341
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T++S +SACS L GK H + LRN
Sbjct: 342 ITMLSAVSACSELDDVSCGKWCHGYVLRN 370
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H+ L+ + + PQ+A+ ++NKM+ S +T A+ A ++ +E+
Sbjct: 509 HLGTALVDMFARCGDPQSAMQVFNKMVKRDVS----AWTAAIGAMAMEGNGTGAIELFDE 564
Query: 92 VIKYGHLHDIFIQNSLL-------------HFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
+++ G D + +LL H + ++KDI+ + P V + +
Sbjct: 565 MLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYG--------IAPQAVHYGCM 616
Query: 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 174
+ L + G EA+ + + ++PN S+L+AC
Sbjct: 617 VDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAAC 652
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 106/186 (56%), Gaps = 8/186 (4%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I+ P NT+++ +S P+ AI LY+++ + +T+ LKA S +
Sbjct: 99 LIQNPNIFTWNTMIRGHAESENPKPAIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRV 158
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH+ I+ G +F+QNSL+H Y SAH++F + D+V W T ISG +
Sbjct: 159 GEKIHSISIRNGFESLVFVQNSLMHMYAACGQYESAHKLFEFMPDRDLVAWNTAISGFAL 218
Query: 145 CGFHKEAIDMFC--GID-VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-----NLNE 196
G EA+ ++ G++ V+P+ TLVS+LSAC+ LG+ LG+ IHA+ ++ NL+
Sbjct: 219 NGKPNEALKLYMEMGLEGVEPDGFTLVSLLSACAELGALALGRRIHAYMVKVGLDENLHA 278
Query: 197 NNIILD 202
NN ++D
Sbjct: 279 NNSLID 284
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT + + P A+ LY +M + +T L AC+ A G IHA+++K
Sbjct: 210 NTAISGFALNGKPNEALKLYMEMGLEGVEPDGFTLVSLLSACAELGALALGRRIHAYMVK 269
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ NSL+ Y I A Q+F+ + +VV+WT++I GL+ GF EAI+
Sbjct: 270 VGLDENLHANNSLIDLYAKCGRIRDAQQVFDEMELRNVVSWTSLIVGLAVNGFGMEAIEH 329
Query: 155 F 155
F
Sbjct: 330 F 330
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 87 EIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSK 144
+IHA I++G L ++ + L++ V+V + AH IF + P++ TW T+I G ++
Sbjct: 58 QIHAFSIRHGVLPNNPDMGKHLIYSIVSVSAPMTYAHNIFTLIQNPNIFTWNTMIRGHAE 117
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
K AI+++ + ++P+ +T +L A S + + ++G+ IH+ S+RN E+ + +
Sbjct: 118 SENPKPAIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRVGEKIHSISIRNGFESLVFV 177
Query: 202 DNAVL 206
N+++
Sbjct: 178 QNSLM 182
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 34/214 (15%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ + S P+ A+ LY+ ML +N YTF LKACS A ++ +I
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-- 146
HAH+IK G +I+ NSLL+ Y DI SA +F+ V D V+W ++I G +KCG
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200
Query: 147 ------FH-----------------------KEAIDMFCGID---VKPNANTLVSVLSAC 174
F+ KEA+++F + +K + LVS L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG GK IHA+ ++ E + IL ++D
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 294
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I++ +++ + P+ A+ L+++M ++ L+AC+ +G
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IHA++ K+ D + L+ Y D+ A ++F + V WT +ISG +
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G +EA++ F + V+PN T +L+ACS G
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAG 365
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVT--VKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IH ++K G + D + LL F + + A +F+ + P+ W T+I G S
Sbjct: 36 QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+EA+ ++ + V NA T +L ACSS+ + + + IHAH ++ + I
Sbjct: 96 SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYT 155
Query: 202 DNAVLD 207
N++L+
Sbjct: 156 TNSLLN 161
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 115/208 (55%), Gaps = 13/208 (6%)
Query: 14 SFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSST-PQNAIPLYNKMLNCPSSY---NH 66
S + QIHAQI++ P N L++ ++S+ Q AI LY ++ + +
Sbjct: 26 SISHVKQIHAQILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDK 85
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+T+ LKAC+ + +G ++HAHV+K G D +I NSL+HFY + + +A ++F+
Sbjct: 86 HTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDR 145
Query: 127 VV-FPDVVTWTTIISGLSKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLG 183
+ + +VV+W +I +K G + + MFC + +P+ T+ SV+ AC LGS LG
Sbjct: 146 MCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLSLG 205
Query: 184 KAIHAHSLRNLNEN---NIILDNAVLDF 208
+HA L+ ++N +++++ ++D
Sbjct: 206 MWVHAFVLKKCDKNVVCDVLVNTCLVDM 233
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGH---LHDIFIQNSLLHFYVTVKDIFSAHQI 123
YT ++AC + G+ +HA V+K + D+ + L+ Y + A Q+
Sbjct: 187 YTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQV 246
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
F + + DV +W +II G + G K A+D F + + PN+ T V VLSAC+ G
Sbjct: 247 FEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSG 305
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
++ L+N+M + Y + L ACS+ + G +IH +V++ G D+ + N ++
Sbjct: 239 SLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIID 298
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
FY+ + + ++FN +V DVV+WTT+I+G + FH +A+D+F + KP+A
Sbjct: 299 FYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFG 358
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
SVL++C SL + + G+ +HA++++ +N+ + N ++D
Sbjct: 359 CTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLID 399
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 9/204 (4%)
Query: 14 SFKQLN-QIHAQIIKIPQPH----ILNTLLKLLTQSSTPQNAIPLYNK-MLNCPSSYNHY 67
++ ++N Q AQ + PH ++++ + TQ A+ L+ + M +C N Y
Sbjct: 96 AYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEY 155
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
++AC+ + L++H V+K G + D+++ SL+ FY + A IF+ +
Sbjct: 156 ILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGL 215
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
VTWT II+G +K G + ++ +F + DV P+ + SVLSACS L + GK
Sbjct: 216 KVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGK 275
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
IH + LR + ++ + N ++DF
Sbjct: 276 QIHGYVLRRGFDMDVSVVNGIIDF 299
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N + +Q + ++ LY + N +TF + A S + + G + H V
Sbjct: 525 VWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQV 584
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK G D F+ NSL+ Y I +H+ F+S D+ W ++IS ++ G +A+
Sbjct: 585 IKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKAL 644
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
++F + VKPN T V +LSACS G LG
Sbjct: 645 EVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLG 678
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 87 EIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHAH++ G H HD+F+ N+LLH Y + A ++F+++ ++VTW++++S ++
Sbjct: 72 KIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQH 131
Query: 146 GFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G+ EA+ +FC KPN L SV+ AC+ LG+ +H ++ ++ +
Sbjct: 132 GYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYV 191
Query: 202 DNAVLDF 208
+++DF
Sbjct: 192 GTSLIDF 198
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 71/134 (52%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+S +A+ L+ +M+ + + T L +C A QKG ++HA+ IK
Sbjct: 326 TMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKV 385
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+D F++N L+ Y + +A ++F+ V +VV++ +I G S+ EA+D+F
Sbjct: 386 NIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLF 445
Query: 156 CGIDVKPNANTLVS 169
+ + + TL++
Sbjct: 446 REMRLSLSPPTLLT 459
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ ++ A+ L+ +M S TF L S + +IH +IK
Sbjct: 426 NAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIK 485
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D F ++L+ Y + A +F + D+V W + SG S+ ++E++ +
Sbjct: 486 FGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKL 545
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + + KPN T +V++A S++ S + G+ H ++ +++ + N+++D
Sbjct: 546 YKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVD 601
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 5/207 (2%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
K + ++ + L H +IPQP+ + N L+K + SS P ++ LY +M+
Sbjct: 73 KLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILP 132
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T LKAC+ + G+ +HA K G +QN++L+ YV I SA ++F
Sbjct: 133 NQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVF 192
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRK 181
+ + +V+W ++I+G SK G +EA+ MF + ++P+ TLV +LS + G+
Sbjct: 193 DDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFD 252
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
LG+ +H H + E + I+ NA++D
Sbjct: 253 LGRFVHLHMVVTGIEIDSIVTNALMDM 279
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ + A+ ++ +M + +T L + G +H H++
Sbjct: 204 NSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVV 263
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS-----GLSKC---- 145
G D + N+L+ Y ++ A +F+ ++ DVV+WT +I+ GL C
Sbjct: 264 TGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEF 323
Query: 146 ----------------------GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSR 180
G + EA+D+F C V N TLV++LS+CS +G
Sbjct: 324 FNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDL 383
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
LGK H++ N + L NA++D
Sbjct: 384 ALGKQAHSYIFDNNITLSATLCNAIIDM 411
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q A+ L+ +M + N T L +CS G + H+++
Sbjct: 336 NSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFD 395
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ N+++ Y + +A +F + + V+W II L+ G+ KEAI+M
Sbjct: 396 NNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEM 455
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
F + V P+ T +LSACS G G+ H + NL
Sbjct: 456 FEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ--HYFEIMNL 496
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
HY Q + L H +HA +I +G + L+ V ++D+ AH++F+
Sbjct: 40 HYLIDQCISLKQLKH-------VHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFD 92
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRK 181
+ P+ + +I G S +++ M C + PN T+ VL AC++
Sbjct: 93 QIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCD-GILPNQFTIPFVLKACAAKSCYW 151
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
LG +HA S + ++ + NA+L+
Sbjct: 152 LGVCVHAQSFKLGMGSHACVQNAILN 177
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 30/152 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L + AI ++ KM + TFT L ACS H+ ++
Sbjct: 437 NVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACS-----------HSGLVD 485
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G H++ + F + PDV + ++ L + G EAI +
Sbjct: 486 TGQ-----------HYFEIMNLTFG--------ISPDVEHYACMVDLLGRRGLLGEAISL 526
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+ VKP+ ++L AC + G+ +GK I
Sbjct: 527 IKKMPVKPDVVVWSALLGACRTYGNLAIGKQI 558
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N L++ + AI LY +ML + YTF L ACS A +G+++H V
Sbjct: 97 MYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV 156
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G DIF+ NSL+HFY + ++F+ ++ +VV+WT++I+G S KEA+
Sbjct: 157 LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAV 216
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + V+PN T+V V+SAC+ L +LGK + ++ E + I+ NA++D
Sbjct: 217 SLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVD 274
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ +M N T + AC+ + G ++ +++ + G + N+L
Sbjct: 213 KEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNAL 272
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID------VK 161
+ Y+ DI +A QIF+ ++V + TI+S H+ A D+ +D +
Sbjct: 273 VDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVH---HEWASDVLVILDEMLQKGPR 329
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ T++S ++AC+ LG +GK+ HA+ LRN E + NA++D
Sbjct: 330 PDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIID 375
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L Q S + AI L+ +M N + T AC A L++ V
Sbjct: 433 NTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGA----LDLAKWVCT 488
Query: 95 YGHLHDIFIQ----NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
Y +DI + +L+ + D SA +F + DV WT I ++ G +
Sbjct: 489 YIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEG 548
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI-----HAHSLR 192
AI++F + VKP+ V++L+ACS GS G+ + AH +R
Sbjct: 549 AIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIR 598
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VK 161
NSL+ V D+ A +IF+ ++ D+V+W T+I L + +EAI++F + +
Sbjct: 402 NSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIP 461
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ T+V + SAC LG+ L K + + +N ++ L A++D
Sbjct: 462 GDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVD 507
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P NT+++ + A+ LY M+ + +T+ LKACSL +G
Sbjct: 58 IDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEG 117
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+++H HV K G D+ +QNSL++ Y +I +A +FN + V +W+ II +
Sbjct: 118 IQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACV 177
Query: 146 GFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
E + + + + +TLV+VLSAC+ LGS LGK IH LRN++E N+++
Sbjct: 178 EMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVV 237
Query: 202 DNAVLDF 208
+++D
Sbjct: 238 KTSLIDM 244
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +L+ + +S + + ++ M S N Y++T + ++ ++ L++ + +
Sbjct: 237 VKTSLIDMYVKSGCLEKGLRVFKNM----SEKNRYSYTVMISGLAIHGRGKEALKVFSEM 292
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGF 147
I+ G D + + + Q F S+ F P V + ++ L + G
Sbjct: 293 IEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGM 352
Query: 148 HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
KEA ++ + +KPN S+LSAC + ++GK I A +L LN+NN
Sbjct: 353 LKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGK-IAAENLFMLNQNN 402
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
++HAHV+K G D F ++L+ K + A IF + P + T+I G
Sbjct: 16 QVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVN 75
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+EA+ ++ + V+P+ T VL ACS LG G +H H + E ++I+
Sbjct: 76 DMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIV 135
Query: 202 DNAVLDF 208
N++++
Sbjct: 136 QNSLINM 142
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC+ + G IH +++ ++ ++ SL+ YV + ++F ++
Sbjct: 202 TLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNM 261
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ ++T +ISGL+ G KEA+ +F + + P+ V V SACS G
Sbjct: 262 SEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAG 315
>gi|255536907|ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549419|gb|EEF50907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 413
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + NT+++ L SS P A+ Y +ML N YTF LK CS + Q
Sbjct: 109 IQDPNIFMWNTIIRALANSSNPDQALFFYIQMLRLGVCPNKYTFPFLLKGCSFC-SIQSC 167
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH HV+K+G D+ + N L+ Y D+ A ++F D+ WTT+ISG ++
Sbjct: 168 KQIHTHVLKFGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLSIWTTMISGYAQN 227
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
EA+ +F +PN T+ SVLS C+ GS LG+ IH + E +IL
Sbjct: 228 FCANEALVLFERMVAEGFEPNGPTIASVLSVCARSGSLDLGERIHGFMIERGVEIGVILG 287
Query: 203 NAVL 206
A++
Sbjct: 288 TALV 291
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I T++ Q+ A+ L+ +M+ N T L C+ + + G IH +
Sbjct: 216 IWTTMISGYAQNFCANEALVLFERMVAEGFEPNGPTIASVLSVCARSGSLDLGERIHGFM 275
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I+ G + + +L+H Y I A ++F+S+ +V TW ++ GL+ G +EA+
Sbjct: 276 IERGVEIGVILGTALVHMYAKNGKILVARKLFDSMTEKNVATWNAMLCGLASHGHAEEAL 335
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
+F ++ + P T V VLSAC G +G+ I
Sbjct: 336 SLFWKLEKEHIVPIDATFVGVLSACCHAGLIDVGRRI 372
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IHA +I + D F + LL F +DI A ++F S+ P++ W TII L+
Sbjct: 67 QIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAIKLFKSIQDPNIFMWNTIIRALAN 126
Query: 145 CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+A+ + + V PN T +L C S S + K IH H L+
Sbjct: 127 SSNPDQALFFYIQMLRLGVCPNKYTFPFLLKGC-SFCSIQSCKQIHTHVLK 176
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P T+++ + + A+ YN+M+ +++T+ LKAC+ A ++G
Sbjct: 93 IDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREG 152
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH HV K G D+F+QNSL++ Y ++ + +F + F +W+++ S
Sbjct: 153 KQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGM 212
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G E + +F + ++K + +VS LSAC++ G+ LG +IH LRN++E NII+
Sbjct: 213 GMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIV 272
Query: 202 DNAVLDF 208
+++D
Sbjct: 273 KTSLVDM 279
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC+ A G+ IH +++ +I ++ SL+ YV I +A IF + +
Sbjct: 241 ALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRN 300
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+T++ +ISG + G + A+ MF + ++P+ VS+L+ACS G K G+ +
Sbjct: 301 NLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFG 360
Query: 189 HSLRN 193
L+
Sbjct: 361 EMLKE 365
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 99.8 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 104/183 (56%), Gaps = 5/183 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N ++K ++ P +A+ +Y +ML + YT+ LK + A + G E+
Sbjct: 82 PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H H++K G ++F+QN+L+H Y ++ A +F+ DVVTW +ISG ++
Sbjct: 142 HDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQF 201
Query: 149 KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI-ILDNA 204
E++ +F ++ V P++ TLVSVLSACS L +GK +H + +++L + +L+NA
Sbjct: 202 DESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY-VKDLKIEPVRVLENA 260
Query: 205 VLD 207
++D
Sbjct: 261 LID 263
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + L+ +M + +T L AC+ A + G I A++ K D F+ N+L
Sbjct: 334 KEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNAL 393
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ A +IFN++ D ++WT +I GL+ G+ +EA+DMF + + P+
Sbjct: 394 IDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDE 453
Query: 165 NTLVSVLSACSSLGSRKLGKAIHA 188
T + VL AC+ G GK A
Sbjct: 454 VTCIGVLCACTHSGMVDKGKKFFA 477
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +S ++ L+++M + T L ACS G +H +V
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKD 248
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-------- 146
++N+L+ Y D+ +A IF+++ DV++WT I++G + G
Sbjct: 249 LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNY 308
Query: 147 -----------------------FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSR 180
KE + +F ++KP+ T+VS+L+AC+ LG+
Sbjct: 309 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 368
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+LG+ I A+ +N + + + NA++D
Sbjct: 369 ELGEWIKAYIDKNEIKIDSFVGNALID 395
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 73 LKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT--VKDIFSAHQIFNSVVF 129
+K C S+A Q IH+ I G + + + ++ F + D+ A +F+++
Sbjct: 26 IKTCKSMAQLKQ----IHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPG 81
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
P+ W +I G S+ G A+ M+C + V P+ T +L + + K G+ +
Sbjct: 82 PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141
Query: 187 HAHSLRNLNENNIILDNAVL 206
H H ++ +N+ + NA++
Sbjct: 142 HDHIVKLGFSSNVFVQNALI 161
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
TQS + AI +++M N++T++ L ACS A G +IH+ V+ G +D
Sbjct: 292 FTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLEND 351
Query: 101 IFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC--- 156
+ + NSL+ Y+ ++ A + F + P+V++WT++I+G S+ G +E+I +F
Sbjct: 352 VSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQ 411
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ V+PN+ TL ++L AC ++ S + +H + ++N +N++++ NA++D
Sbjct: 412 GVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVD 462
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
PS + + C+ + + + G+ IH+ +IK G D+F+ N+LL Y + A
Sbjct: 11 PSKIEYSLLKDIVSFCN-SRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEA 69
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 177
Q+F+ + DV +WT ++S K G H+EA+++F + + PN TL + L +CS+L
Sbjct: 70 RQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSAL 129
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G A ++ ++N +L +A++DF
Sbjct: 130 REFNHGTRFQALVTKSGFDSNPVLGSALIDF 160
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ ++ + A+ LY++M+ + N +TF + L A S + L +HAH++ +
Sbjct: 188 MVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKL-VHAHLMMWR 246
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
++ ++ +L+ Y + I A ++ + DV WT IISG ++ +EAI F
Sbjct: 247 IELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFH 306
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ V PN T +L+ACSS+ + LGK IH+ + EN++ + N+++D
Sbjct: 307 EMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVD 360
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L++ ML N +T + AL++CS G A V K G + + ++L
Sbjct: 98 EEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSAL 157
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNA 164
+ FY A+++F + D+V+WT ++S + G +A+ ++ V PN
Sbjct: 158 IDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNE 217
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T V +L+A S LG GK +HAH + E N++L A++D
Sbjct: 218 FTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKTALVD 259
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P++++ +L+ ++ + +I ++ M N +T + L AC + +
Sbjct: 379 IASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQT 438
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H ++IK +D+ + N+L+ Y + + A + + + DV+T+T++ + +++
Sbjct: 439 RKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQT 498
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G H+ A+++ + DV+ + +L S LSA + + + GK +H +S+++ + I +
Sbjct: 499 GNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVS 558
Query: 203 NAVLDF 208
N ++D
Sbjct: 559 NGLVDL 564
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 3/151 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L + Q+ + A+ + M + ++ L A + + G ++H + +K
Sbjct: 490 SLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKS 549
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G I + N L+ Y I AH+ F + PD V+W +I GL+ G A+ F
Sbjct: 550 GLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAF 609
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ V+P+ T + VL ACS G +G
Sbjct: 610 EDMRLAGVEPDQITCLLVLYACSHGGLVDMG 640
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 35/232 (15%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
KPT I +QI + P + N L++ + + P A Y +ML ++ TF
Sbjct: 64 KPTNLLGYAYGIFSQI-QNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITF 122
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+KA + G + H+ ++++G +D++++NSL+H Y I +A +IF + F
Sbjct: 123 PFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPF 182
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF----------------------C---GID----- 159
DVV+WT++++G KCG ++A +MF C ID
Sbjct: 183 RDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELM 242
Query: 160 ----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V N +VSV+S+C+ LG+ + G+ H + +++ N+IL A++D
Sbjct: 243 KREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVD 294
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N + +C+ A + G H +V+K ++ + +L
Sbjct: 233 EKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTAL 292
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNA 164
+ Y +I A ++F + D ++W++II GL+ G +AI F + P
Sbjct: 293 VDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRD 352
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
TL +VLSACS G G I+ + R+
Sbjct: 353 ITLTAVLSACSHGGLVDKGLEIYENMKRD 381
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 106/188 (56%), Gaps = 7/188 (3%)
Query: 27 KIPQPHILNTLLKLLTQSS--TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++ + NT+++ S+ + A+ +Y ML N +T+ LKAC+
Sbjct: 95 RLYDTFLFNTIIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNL 154
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD-IFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H V+K+G +D+ +QN+++H Y +D I A ++F+ + D V+W+ +I G +
Sbjct: 155 GKSVHGSVLKFGFDNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSWSAMIGGYA 214
Query: 144 KCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+ G +AID+F + + +P+ T+VSVLSAC+ LG+ +LGK + ++ + + ++
Sbjct: 215 RLGRCSDAIDLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSV 274
Query: 200 ILDNAVLD 207
L NA++D
Sbjct: 275 ELCNALID 282
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 49 NAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+AI L+ +M + + T L AC+ A + G + +++ K + + N+L
Sbjct: 221 DAIDLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSVELCNAL 280
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ + D+ A ++F ++ +V+WT++I+GL+ G EA++ F + V P+
Sbjct: 281 IDMFAKCGDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDD 340
Query: 165 NTLVSVLSACSSLG 178
+ +LSACS G
Sbjct: 341 VAFIGLLSACSHSG 354
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 113/217 (52%), Gaps = 36/217 (16%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I P I N +++ + S P +++ ++ KML + ++ T+ +KA + +
Sbjct: 73 QISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKS 132
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ +HA +IK GH D FIQNSL+H Y + +I AH++F S+ ++V+W +++ G +K
Sbjct: 133 GVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAK 192
Query: 145 C-------------------------------GFHKEAIDMFCGID-VKPNAN--TLVSV 170
C G ++EA+ +F + V P AN T+VSV
Sbjct: 193 CGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSV 252
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LSAC+ LG+ + G+ +H + + NL ++L +++D
Sbjct: 253 LSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVD 289
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++ KM N T L AC+ A QKG +H ++I + +Q SL
Sbjct: 228 REAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSL 287
Query: 108 LHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGID---VKP 162
+ Y I A +F + DV W +I GL+ G +E++ +F + ++
Sbjct: 288 VDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRS 347
Query: 163 NANTLVSVLSACSSLG 178
+ T + +L+AC+ G
Sbjct: 348 DEITYLCLLAACAHGG 363
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 23 AQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
A I+ P I N L++ + S P+N+ Y K L ++ T +KAC+
Sbjct: 74 ASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENA 133
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G++ H IK+G D ++QNSL+H Y +V DI +A +F + DVV+WT +I+G
Sbjct: 134 PMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGY 193
Query: 143 SKCGFHKEAIDMFCGI----------------------------------DVKPNANTLV 168
+CG K A ++F + V N +V
Sbjct: 194 HRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMV 253
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+S+C+ LG+ +G+ H + +RN N+IL AV+D
Sbjct: 254 GVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDM 293
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ +T++ +++ + A+ + + N + +C+ A
Sbjct: 208 RMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAM 267
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + H +V++ ++ + +++ Y ++ A +F + DV+ WT +I+GL+
Sbjct: 268 GEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAM 327
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G+ ++A+ F + K P T +VL+ACS G + G I R+
Sbjct: 328 HGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRD 379
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 34/214 (15%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ + S P+ A+ LY+ ML +N YTF LKACS A ++ +I
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-- 146
HAH+IK G +I+ NSLL+ Y DI SA +F+ V D V+W ++I G +KCG
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200
Query: 147 ------FH-----------------------KEAIDMFCGID---VKPNANTLVSVLSAC 174
F+ KEA+++F + +K + LVS L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG GK IHA+ ++ E + IL ++D
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 294
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I++ +++ + P+ A+ L+++M ++ L+AC+ +G
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IHA++ K+ D + L+ Y D+ A ++F + V WT +ISG +
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G +EA++ F + V+PN T +L+ACS G
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAG 365
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVT--VKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IH ++K G + D + LL F + + A +F+ + P+ W T+I G S
Sbjct: 36 QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+EA+ ++ + V NA T +L ACSS+ + + + IHAH ++ + I
Sbjct: 96 SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYT 155
Query: 202 DNAVLD 207
N++L+
Sbjct: 156 TNSLLN 161
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 103/187 (55%), Gaps = 5/187 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ T++ +Q A+ ++++M+ SS N +T LKAC A +
Sbjct: 223 QMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEF 282
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H +IK D+FI SL+ Y +I + ++F+ + + VTWT+II+G ++
Sbjct: 283 GKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTSIIAGYAR 342
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EAI +F + + N T+VS+L AC S + +GK +HA ++N ++NI +
Sbjct: 343 NGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKNSMQSNIYI 402
Query: 202 DNAVLDF 208
+ ++ F
Sbjct: 403 GSTLVWF 409
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N+ T L+AC G E+HA ++K +I+I ++L
Sbjct: 347 EEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKNSMQSNIYIGSTL 406
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ FY ++ A ++ ++ DVV+WT IISG + G EA++ + V+PN
Sbjct: 407 VWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHEPEALEFLKEMLEEGVEPNP 466
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T S L AC+ L + GK IH+ + L +N+ + +A+++
Sbjct: 467 FTYSSALKACAHLEAILQGKLIHSSVNKTLALSNVFVGSALIN 509
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 15 FKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F +L + K+P+ ++++ ++ ++ A+ L++ + N TF
Sbjct: 111 FGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVRANGKTFVCV 170
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L CS + G +IHA ++K + ++ + ++L+ FY D+ A F+ + DV
Sbjct: 171 LNLCSKRLDFELGRQIHACIVK-DNWRNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDV 229
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V WTT+I+ S+ G EA+ MF + PN T+ SVL AC + + GK +H
Sbjct: 230 VCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGA 289
Query: 190 SLRNLNENNIILDNAVL 206
++ + + ++ + +++
Sbjct: 290 IIKKMFKEDVFIGTSLV 306
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L++C ++ +HA V K ++ N+L+ Y + A ++F+ + +V
Sbjct: 73 LQSCCTVREVRR---VHAVVFKCLDNSVTYVNNNLISAYSRFGKLVEARKVFDKMPERNV 129
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT +++G S+ GF EA+ +F V+ N T V VL+ CS +LG+ IHA
Sbjct: 130 VSWTAVVNGYSRYGFDDEALRLFDDCIENGVRANGKTFVCVLNLCSKRLDFELGRQIHAC 189
Query: 190 SLRNLNENNIILDNAVLDF 208
+++ N N+I+D+A++ F
Sbjct: 190 IVKD-NWRNLIVDSALVCF 207
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ +ML N +T++ ALKAC+ A +G IH+ V K L ++F+ ++L+
Sbjct: 449 EALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQGKLIHSSVNKTLALSNVFVGSALI 508
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPN 163
+ Y + A Q+F+S+ ++V+W +I G ++ G EA+ + GI+V +
Sbjct: 509 NMYAKCGYVSEAIQVFDSMPQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAEGIEV--D 566
Query: 164 ANTLVSVLSACSSL 177
L +VLSAC +
Sbjct: 567 DYILTTVLSACGDV 580
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 5/196 (2%)
Query: 18 LNQIHAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L H +IPQP+ + N L++ + S+ P ++ L+ +M++ N +TF LKA
Sbjct: 87 LRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKA 146
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ + + + +HA IK G +QN++L YV + I SA Q+F+ + +V+W
Sbjct: 147 CAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSW 206
Query: 136 TTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
++I+G SK GF EAI +F + V+ + TLVS+LSA S + LG+ +H + +
Sbjct: 207 NSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVI 266
Query: 193 NLNENNIILDNAVLDF 208
E + I+ NA++D
Sbjct: 267 TGVEIDSIVTNALIDM 282
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ AI L+ +ML + +T L A S G +H +++
Sbjct: 207 NSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVI 266
Query: 95 YGHLHDIFIQNSLLHFYVTV---------------KDIFS----------------AHQI 123
G D + N+L+ Y KD+ S A QI
Sbjct: 267 TGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQI 326
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSR 180
FN + +VV+W +II L + G + EA+++F C V P+ TLVS+LS CS+ G
Sbjct: 327 FNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDL 386
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
LGK H + N+ ++ L N+++D
Sbjct: 387 ALGKQAHCYICDNIITVSVTLCNSLIDM 414
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L Q A+ L+++M + T L CS G + H ++
Sbjct: 339 NSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICD 398
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + NSL+ Y + +A IF + +VV+W II L+ GF +EAI+M
Sbjct: 399 NIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEM 458
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGK 184
F + P+ T +LSACS G +G+
Sbjct: 459 FKSMQASGLYPDEITFTGLLSACSHSGLVDMGR 491
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 7/172 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+P I N +++ ++++ Q+A+ +Y+ M S + +TF LKACS Q G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLS 143
+HA V + G D+F+QN L+ Y + + SA +F + P+ +V+WT I+S +
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 144 KCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ G EA+++F +DVKP+ LVSVL+A + L K G++IHA ++
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ +P+ I++ ++ Q+ P A+ ++++M + L A + +
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLK 239
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IHA V+K G + + SL Y + +A +F+ + P+++ W +ISG +
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
K G+ +EAIDMF + DV+P+ ++ S +SAC+ +GS + ++++ + R+ +++
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359
Query: 201 LDNAVLD 207
+ +A++D
Sbjct: 360 ISSALID 366
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K P + N ++ ++ + AI ++++M+N + + T A+ AC+ + ++
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++ +V + + D+FI ++L+ + + A +F+ + DVV W+ +I G
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G +EAI ++ ++ V PN T + +L AC+ G + G
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA ++ G F+ L+H + DI A Q+F+ + P + W II G S+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++A+ M+ + V P++ T +L ACS L ++G+ +HA R + ++ + N
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158
Query: 204 AVL 206
++
Sbjct: 159 GLI 161
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 34/216 (15%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P I N +++ + S P A Y + ++ TF +K+C+ H G
Sbjct: 79 IQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMG 138
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ H H+IK+G D+++QNSL+H Y T D +A IF + + DVV+WT++I G +KC
Sbjct: 139 SQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKC 198
Query: 146 GFHKEAIDMFCGI----------------------------------DVKPNANTLVSVL 171
G + A +F + V+ N +VSV+
Sbjct: 199 GDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVI 258
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+C+ LG+ +LG+ H + ++N N+IL A++D
Sbjct: 259 SSCAHLGALELGERAHDYVVKNGMTLNLILGTALVD 294
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ +T++ Q++ A+ L+ + + N + +C+ A +
Sbjct: 210 QMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALEL 269
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G H +V+K G ++ + +L+ Y I A +F + D ++WT +I+GL+
Sbjct: 270 GERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAM 329
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G+ + ++ F + + P T +VLSACS G
Sbjct: 330 HGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGG 366
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 7/172 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+P I N +++ ++++ Q+A+ +Y+ M S + +TF LKACS Q G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLS 143
+HA V + G D+F+QN L+ Y + + SA +F + P+ +V+WT I+S +
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 144 KCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ G EA+++F +DVKP+ LVSVL+A + L K G++IHA ++
Sbjct: 199 QNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ +P+ I++ ++ Q+ P A+ +++ M + L A + +
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLK 239
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IHA V+K G + + SL Y + +A +F+ + P+++ W +ISG +
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
K G+ +EAIDMF + DV+P+ ++ S +SAC+ +GS + ++++ + R+ +++
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359
Query: 201 LDNAVLD 207
+ +A++D
Sbjct: 360 ISSALID 366
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K P + N ++ ++ + AI ++++M+N + + T A+ AC+ + ++
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++ +V + + D+FI ++L+ + + A +F+ + DVV W+ +I G
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G +EAI ++ ++ V PN T + +L AC+ G + G
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA ++ G F+ L+H + DI A Q+F+ + P + W II G S+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++A+ M+ + V P++ T +L ACS L ++G+ +HA R + ++ + N
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158
Query: 204 AVL 206
++
Sbjct: 159 GLI 161
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 27 KIPQPHIL--NTLLKLL-TQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAH 82
+IP P N+L++ L S P A+ +Y +ML S N +T ALKAC+ A
Sbjct: 85 QIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAP 142
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISG 141
+G ++HA ++ G ++Q LL+ Y + + A +F+ + ++V W+ ++SG
Sbjct: 143 GEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSG 202
Query: 142 LSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S+ G EA+ +F + V+P+ T+VSV+SAC+ G+ LGK +HA+ R +
Sbjct: 203 YSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVD 262
Query: 199 IILDNAVLDF 208
+ L A++D
Sbjct: 263 LELSTALIDM 272
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + T + AC+ A A G +HA++ + G D+ + +L+
Sbjct: 211 EALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALI 270
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
Y I A +F+++V D W+ +I G + G ++A+ +F + V+PN
Sbjct: 271 DMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNV 330
Query: 166 TLVSVLSACSSLGSRKLGK 184
T + VLSAC+ G + G+
Sbjct: 331 TFIGVLSACAHSGLVEDGR 349
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+L+ ++ QS+ + A L+ +++ N Y+ + L+AC+ G +IH H
Sbjct: 312 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 371
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK GH D+F+ N+L+ FY D+ S+ +IF+S+ + V+W TI+ G S+ G +EA+
Sbjct: 372 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 431
Query: 153 DMFCGIDVKPNANTLV---SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+FC + T V SVL AC+S S + IH ++ N+ ++ N+++D
Sbjct: 432 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLID 489
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +QS + A+ ++ +M T++ L+AC+ + + +IH + K
Sbjct: 415 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 474
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D I NSL+ Y I A ++F ++ D+++W IISG + G +A+++
Sbjct: 475 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALEL 534
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+ N T V++LS C S G
Sbjct: 535 FDRMNKSNVESNDITFVALLSVCCSTG 561
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 59 NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
+CP N + Q+ +++ A Q IH IK + + + +LL Y DI
Sbjct: 242 DCPE--NAFRCAQSCSLLAISCARQG---IHGCAIKTLNDTEPHVGGALLDMYAKCGDIK 296
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
A F + + DV+ + +IS ++ +++A ++F + V PN +L SVL AC+
Sbjct: 297 DARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 356
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ GK IH H+++ +E+++ + NA++DF
Sbjct: 357 NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF 389
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ TL++ Q + A L+ ++ N + T LK A
Sbjct: 121 RMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGL 180
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H+ K GH H+ F+ + L+ Y + A +FN +V D V WT ++S S+
Sbjct: 181 AGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE 240
Query: 145 CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
D NA +CS L + IH +++ LN+ + A
Sbjct: 241 N-------------DCPENA---FRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGA 284
Query: 205 VLD 207
+LD
Sbjct: 285 LLD 287
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+L+ ++ QS+ + A L+ +++ N Y+ + L+AC+ G +IH H
Sbjct: 331 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 390
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK GH D+F+ N+L+ FY D+ S+ +IF+S+ + V+W TI+ G S+ G +EA+
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 450
Query: 153 DMFCGIDVKPNANTLV---SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+FC + T V SVL AC+S S + IH ++ N+ ++ N+++D
Sbjct: 451 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLID 508
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++ +++ P+NA +++KM N + T LKA + G IH
Sbjct: 230 VWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCA 289
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK + + + +LL Y DI A F + + DV+ + +IS ++ +++A
Sbjct: 290 IKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAF 349
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++F + V PN +L SVL AC+++ GK IH H+++ +E+++ + NA++DF
Sbjct: 350 ELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF 408
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ TL++ Q + A L+ ++ N + T LK A
Sbjct: 121 RMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGL 180
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H+ K GH H+ F+ + L+ Y + A +FN +V D V WT ++S S+
Sbjct: 181 AGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE 240
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ A +F + V KPN L SVL A L S LGK IH +++ LN+ +
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHV 300
Query: 202 DNAVLD 207
A+LD
Sbjct: 301 GGALLD 306
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +QS + A+ ++ +M T++ L+AC+ + + +IH + K
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D I NSL+ Y I A ++F ++ D+++W IISG + G +A+++
Sbjct: 494 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALEL 553
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+ N T V++LS CSS G
Sbjct: 554 FDRMNKSNVESNDITFVALLSVCSSTG 580
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ T+SS P A+ L+++M +++T+ +KAC + G +H+ ++K
Sbjct: 69 NSIIRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVK 128
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D ++ N+LL Y + + A ++FN + DVV+W+++I+G C +A+ +
Sbjct: 129 AGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMV 188
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + + KPN+ TLVS+LSAC+ L + +G++IH++ + N ++ L A+L+
Sbjct: 189 FRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAILEM 245
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ ++ M+ N T L AC+ G IH+++I D+ + ++L
Sbjct: 184 DALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAIL 243
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y I A ++FNS+ ++ +WT +ISGL+ ++AI +F ++ ++P++
Sbjct: 244 EMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSM 303
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ +LSACS LG G+ + ++ N
Sbjct: 304 SFSEILSACSHLGLVDEGQTFFSQMVKIYN 333
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 102/187 (54%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P NT+++ + + A+ YN+M+ + +++T+ LKAC+ + ++G
Sbjct: 92 IDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREG 151
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH V K G D+F+QNSL++ Y ++ + +F + +W++++S +
Sbjct: 152 KQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGM 211
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G E + +F G+ ++K + +VS L AC++ G+ LG +IH LRN++E NII+
Sbjct: 212 GMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIV 271
Query: 202 DNAVLDF 208
+++D
Sbjct: 272 QTSLVDM 278
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC+ A G+ IH +++ +I +Q SL+ YV + A IF + +
Sbjct: 240 ALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRN 299
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+T++ +ISGL+ G + A+ MF + ++P+ VSVL+ACS G K G+ + A
Sbjct: 300 NLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFA 359
Query: 189 HSLRN 193
L+
Sbjct: 360 EMLKE 364
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+L+ ++ QS+ + A L+ +++ N Y+ + L+AC+ G +IH H
Sbjct: 331 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 390
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK GH D+F+ N+L+ FY D+ S+ +IF+S+ + V+W TI+ G S+ G +EA+
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 450
Query: 153 DMFCGIDVKPNANTLV---SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+FC + T V SVL AC+S S + IH ++ N+ ++ N+++D
Sbjct: 451 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLID 508
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++ +++ P+NA +++KM N + T LKA + G IH
Sbjct: 230 VWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCA 289
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK + + + +LL Y DI A F + + DV+ + +IS ++ +++A
Sbjct: 290 IKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAF 349
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++F + V PN +L SVL AC+++ GK IH H+++ +E+++ + NA++DF
Sbjct: 350 ELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF 408
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ TL++ Q + A L+ ++ N + T LK A
Sbjct: 121 RMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGL 180
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H+ K GH H+ F+ + L+ Y + A +FN +V D V WT ++S S+
Sbjct: 181 AGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE 240
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ A +F + V KPN L SVL A L S LGK IH +++ LN+ +
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHV 300
Query: 202 DNAVLD 207
A+LD
Sbjct: 301 GGALLD 306
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +QS + A+ ++ +M T++ L+AC+ + + +IH + K
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D I NSL+ Y I A ++F ++ D+++W IISG + G +A+++
Sbjct: 494 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALEL 553
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+ N T V++LS CSS G
Sbjct: 554 FDRMNKSNVESNDITFVALLSVCSSTG 580
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I N+L++ + + TP +Y M + N++TF LK+ + +G I
Sbjct: 72 PHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGLSEGQCI 131
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H HV+K G DI++QNSLL+ Y + D+ ++F+ + DVV+WT +I+G +
Sbjct: 132 HTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERY 191
Query: 149 KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+A+ F + V PN T+V+ LSAC+ G+ ++G IH R+ E ++IL ++
Sbjct: 192 DDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDVILGTSL 251
Query: 206 LD 207
+D
Sbjct: 252 ID 253
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ + +M NH T AL AC+ A + G+ IH + + G D+ + SL+
Sbjct: 193 DALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDVILGTSLI 252
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y I +F S+ +V TW ++I GL+ EA+ F ++ +K +
Sbjct: 253 DMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEGIKADEV 312
Query: 166 TLVSVLSACSSLGSRKLGKAI 186
TL++VL ACS G ++G+ I
Sbjct: 313 TLIAVLCACSHSGMVQMGRQI 333
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 101/190 (53%), Gaps = 10/190 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-----HYTFTQALKACSLAHAHQ 83
P + N +++ + AI +Y +ML P N +TF +K+C+ +
Sbjct: 120 PNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYD 179
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISG 141
G ++H HV K+G + ++NSL+ YV + AH++F + D + +WT I+SG
Sbjct: 180 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSG 239
Query: 142 LSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ G + +A++ F + ++P+ +LVSVL C+ LG+ +LGK IH ++ + N
Sbjct: 240 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRN 299
Query: 199 IILDNAVLDF 208
I + NA+++
Sbjct: 300 ICVCNALIEM 309
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ + +M + + L C+ A + G IH + K G L +I + N+L+
Sbjct: 248 DALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALI 307
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y I ++F+ + DV++W+T+I GL+ G +EAI++F + ++P+
Sbjct: 308 EMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSII 367
Query: 166 TLVSVLSACSSLG 178
T V +L+AC+ G
Sbjct: 368 TFVGLLTACAHAG 380
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 50 AIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
AI LY++ML + YTF L+ C +G E+H HV++YG+ DI + N+L+
Sbjct: 179 AICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALI 238
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
YV D+ SA +F+ + D+++W +ISG + G E + +F G+ V P+
Sbjct: 239 TMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLM 298
Query: 166 TLVSVLSACSSLGSRKLGKAIHAH 189
TL SV+SAC LG R+LG+ IHA+
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAY 322
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 5/186 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ I+ N ++ ++ + L+ M + T T + AC L +
Sbjct: 256 RMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IHA+VI G DI + NSL Y+ A ++F+ + D+V+WTT+ISG
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEY 375
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
++AID + +D VKP+ T+ +VLSAC++LG G +H +++ + +I+
Sbjct: 376 NFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIV 435
Query: 202 DNAVLD 207
N +++
Sbjct: 436 ANNLIN 441
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ AI Y M + T L AC+ G+E+H IK + + + N+
Sbjct: 379 PEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN 438
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--CGIDVKPNA 164
L++ Y K I A IF+++ +V++WT+II+GL EA+ F + ++PNA
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMTLQPNA 498
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
TL + L+AC+ +G+ GK IHAH LR + L NA+LD
Sbjct: 499 ITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLD 541
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L N M + + F ++ C AH++G ++++ + + + + N+
Sbjct: 76 EEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAF 135
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
L +V ++ A +F + ++ +W ++ G +K G+ EAI ++ + VKP+
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPD 195
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T VL C + G+ +H H +R E +I + NA++
Sbjct: 196 VYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALI 238
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G EIHAHV++ G D F+ N+LL YV + A FNS DV +W +++G S+
Sbjct: 517 GKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSE 575
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSAC 174
G +++F V+P+ T +S+L C
Sbjct: 576 RGQGSVVVELFDRMVKARVRPDEITFISLLCGC 608
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 42/230 (18%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
TL F QLN P N +++ T +P+ A L+ ML + + +T+
Sbjct: 76 TLVFDQLNA--------PDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPC 127
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
+ AC +A G HA IK G D+++QN++++ Y +++ +F+ + +
Sbjct: 128 VINACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRN 187
Query: 132 VVTWTTIISGLSKCGF----------------------------HK---EAIDMFCGI-- 158
V WTT+I+G CG HK EA D+F +
Sbjct: 188 VFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQA 247
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+V+PN TLVS++ AC+ +GS KLG+ +H +L+N E L A++D
Sbjct: 248 DNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALID 297
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P A L+ +M N YT ++AC+ + + G +H +K G + F+ +
Sbjct: 235 PIEAFDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTA 294
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PN 163
L+ Y ++ A +F+ + + TW T+I+ L G+ EA+ +F ++ P+
Sbjct: 295 LIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYRDEALSIFEEMEKANEVPD 354
Query: 164 ANTLVSVLSACSSLGSRKLGK 184
A T V VLSAC + +L +
Sbjct: 355 AITFVGVLSACVYMNDLELAQ 375
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LK CS ++ ++H +I+YG +D + L+ + + A +F+ + PDV
Sbjct: 31 LKKCS---NFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVFDQLNAPDV 87
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
TW +I + G K A +F + P+ T V++AC + + +G+ HA
Sbjct: 88 FTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHAL 147
Query: 190 SLRNLNENNIILDNAVLD 207
+++ ++ + N +++
Sbjct: 148 AIKMGFWGDLYVQNTMMN 165
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 98/183 (53%), Gaps = 4/183 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P P I NT+++ +S P A+ LY M+ ++YT+ L AC+ A + G
Sbjct: 74 PDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRF 133
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H V+K G D+F+ N+L+ FY A +F+ DVVTW +I+ G
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193
Query: 149 KEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
++A D+ + +++P+ T+VS++ AC+ LG+ + GK +H++S + N+ ++NA
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNA 253
Query: 205 VLD 207
+LD
Sbjct: 254 ILD 256
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + AC+ ++G +H++ + G ++ + N++L Y DI SA ++FN +
Sbjct: 215 TMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRI 274
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
DV++WT+++SGL+K G+ +EA+ +F + ++ + TLV VLSAC+ G+ GK
Sbjct: 275 REKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGK 334
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
IH + +++L+ A++D
Sbjct: 335 YIHLLIDKFEINCDLVLETALVD 357
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++L L +S Q A+ L+ KM + T L AC+ A +G IH + K+
Sbjct: 284 SMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKF 343
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D+ ++ +L+ Y I A Q+F + +V TW +I GL+ G ++AI +F
Sbjct: 344 EINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLF 403
Query: 156 CGID---VKPNANTLVSVLSACSSLG 178
++ + P+ T +++L ACS G
Sbjct: 404 DQMEHDKLMPDDVTFIALLCACSHAG 429
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISG 141
K + HA +++ LH+ + L+ F D+ A ++F + PD T+I G
Sbjct: 26 KTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRG 85
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ EA+ ++ + V + T VL+AC+ LG+ KLG+ H L+N ++
Sbjct: 86 YARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145
Query: 199 IILDNAVLDF 208
+ + NA++ F
Sbjct: 146 LFVINALIQF 155
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHA 81
+ I P + N +++ SS P NA+ Y M N + T + ALKAC+ A A
Sbjct: 59 RYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALA 118
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+ +++H+ ++++G D+ +Q +LL Y + D+ A ++F+ + PD+ +W +I+G
Sbjct: 119 RSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAG 178
Query: 142 LSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ +AI F + V +PNA T+ L ACS LG+ K G+++H + + ++
Sbjct: 179 FAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDS 238
Query: 198 NIILDNAVLD 207
N+ + N V+D
Sbjct: 239 NVQVCNVVID 248
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQ 83
++PQP I N L+ Q S P +AI + +M ++ N T AL ACS A +
Sbjct: 163 EMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALK 222
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-NSVVFPDVVTWTTIISGL 142
+G +H ++++ ++ + N ++ Y + A+ +F N ++TW T+I
Sbjct: 223 EGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAF 282
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG-KAIHAHSLRNLNEN 197
+ G +A+D+F + + P+A + ++VL AC+ G + G K ++ + R L N
Sbjct: 283 AMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPN 341
Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 49/112 (43%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ A+ L+ K+ S + ++ L AC+ A + GL++ + +
Sbjct: 276 NTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQ 335
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
G +I S++ + A+ I +S+ FP++V W T++ G
Sbjct: 336 RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYG 387
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 102/187 (54%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P NT+++ + + A+ YN+M+ + +++T+ LKAC+ + ++G
Sbjct: 92 IDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREG 151
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH V K G D+F+QNSL++ Y ++ + +F + +W++++S +
Sbjct: 152 KQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGM 211
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G E + +F G+ ++K + +VS L AC++ G+ LG +IH LRN++E NII+
Sbjct: 212 GMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIV 271
Query: 202 DNAVLDF 208
+++D
Sbjct: 272 QTSLVDM 278
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC+ A G+ IH +++ +I +Q SL+ YV + A IF + +
Sbjct: 240 ALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRN 299
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+T++ +ISGL+ G + A+ MF + ++P+ VSVL+ACS G K G+ + A
Sbjct: 300 NLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFA 359
Query: 189 HSLRN 193
L+
Sbjct: 360 EMLKE 364
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P ++ N +++ + AI LY+ ML+ N YT+ LKACS A +
Sbjct: 68 EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+EIH+H +G D+F+ +L+ FY + A ++F+S+ DVV W +I+G S
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A+ + + + PN++T+V VL + GKA+H + +R +N +++
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247
Query: 202 DNAVLD 207
+LD
Sbjct: 248 GTGLLD 253
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 44 SSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
S + A+ L+++M L T L+AC+ +G ++H ++IK G + DI
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDIL 348
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CG 157
+ N+LL Y I A + F+ + D V+++ I+SG + G A+ +F G
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG 408
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
ID P+ T++ VL ACS L + + G H + + + ++ NA++D
Sbjct: 409 ID--PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 456
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L+AC + + + +IH H +K D + + L Y++ + A ++F+ +
Sbjct: 11 YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKA 185
P V+ W II + G AID++ + V+PN T VL ACS L + + G
Sbjct: 71 NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH+H+ E+++ + A++DF
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDF 153
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS A Q G H ++I G D I N+L+ Y I A ++FN +
Sbjct: 415 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
D+V+W +I G G EA+ +F + +KP+ T + +LS+CS G
Sbjct: 475 DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 528
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
CP N T L A A G +H + ++ + + + LL Y + +
Sbjct: 207 CP---NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLY 263
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACS 175
A +IF+ + + V+W+ +I G KEA+++F + +K P TL SVL AC+
Sbjct: 264 ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
L G+ +H + ++ + +I+L N +L
Sbjct: 324 KLTDLSRGRKLHCYIIKLGSVLDILLGNTLL 354
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P ++ N +++ + AI LY+ ML+ N YT+ LKACS A +
Sbjct: 68 EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+EIH+H +G D+F+ +L+ FY + A ++F+S+ DVV W +I+G S
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A+ + + + PN++T+V VL + GKA+H + +R +N +++
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247
Query: 202 DNAVLD 207
+LD
Sbjct: 248 GTGLLD 253
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 44 SSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
S + A+ L+++M L T L+AC+ +G ++H ++IK G + DI
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDIL 348
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CG 157
+ N+LL Y I A + F+ + D V+++ I+SG + G A+ +F G
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG 408
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
ID P+ T++ VL ACS L + + G H + + + ++ NA++D
Sbjct: 409 ID--PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 456
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L+AC + + + +IH H +K D + + L Y++ + A ++F+ +
Sbjct: 11 YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKA 185
P V+ W II + G AID++ + V+PN T VL ACS L + + G
Sbjct: 71 NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH+H+ E+++ + A++DF
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDF 153
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS A Q G H ++I G D I N+L+ Y I A ++FN +
Sbjct: 415 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
D+V+W +I G G EA+ +F + +KP+ T + +LS+CS G
Sbjct: 475 DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 528
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
CP N T L A A G +H + ++ + + + LL Y + +
Sbjct: 207 CP---NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLY 263
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACS 175
A +IF+ + + V+W+ +I G KEA+++F + +K P TL SVL AC+
Sbjct: 264 ARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
L G+ +H + ++ +I+L N +L
Sbjct: 324 KLTDLSRGRKLHCYIIKLGXVLDILLGNTLL 354
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ + S +PQ AI L+ +M N+ TF LKAC+ Q+G + HA IK
Sbjct: 100 NFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIK 159
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D++++N+L++FY + K + A ++F+ + +V+W +I+ + EAID
Sbjct: 160 CGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDY 219
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +P+ T+V +LSAC+ LG+ LG+ +H+ + N+ L A +D
Sbjct: 220 FLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVD 275
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ AI + KM N + T L AC+ G +H+ V+
Sbjct: 201 NAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVG 260
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++ + + + Y D+ A +FN + V TW+ +I GL++ GF EAI++
Sbjct: 261 RGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIEL 320
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + + PN T + VL ACS G
Sbjct: 321 FTNMMSSPIVPNHVTFIGVLCACSHAG 347
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD---------IFSAHQIFNSVVFPDVVTWT 136
EIHA ++ G +D F LL +F H F+S P W
Sbjct: 47 FEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCH--FHSATMP----WN 100
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
II G S +EAI +F + V+PN T +L AC++L + + GK HA +++
Sbjct: 101 FIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKC 160
Query: 194 LNENNIILDNAVLDF 208
+ ++ + N ++ F
Sbjct: 161 GLDLDVYVRNTLIYF 175
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 30/136 (22%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q AI L+ M++ P NH TF L ACS HA ++ +
Sbjct: 308 LAQHGFANEAIELFTNMMSSPIVPNHVTFIGVLCACS-----------HAGLVDKSY--- 353
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
H++ ++ ++ + P ++ + +++ L + G KEA ++ + V
Sbjct: 354 --------HYFNLMERVYG--------IKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPV 397
Query: 161 KPNANTLVSVLSACSS 176
+P+ ++LSACS
Sbjct: 398 EPDPIVWRTLLSACSG 413
>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Cucumis sativus]
Length = 603
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F+ + H ++P P++++ +L+ + P A+ L+ +ML P N +TF
Sbjct: 70 VRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSPVVPNDFTFA 129
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
A+KACS+ + G HAHV +G+ +I + +SL+ Y D+ A +FNS+
Sbjct: 130 TAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCK 189
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAI 186
++V+WT++I+ ++ EA+ +F PN L SV+SAC+SLG GK +
Sbjct: 190 NIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVM 249
Query: 187 HAHSL 191
H ++
Sbjct: 250 HGAAI 254
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ H+ +K G L++ N L++ YV + I +AHQ+F+ + P+VV+WT++++G
Sbjct: 44 ISTHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDN 103
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G A+ +F + V PN T + + ACS L + + G+ HAH NI++
Sbjct: 104 GQPSTALFLFGEMLRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVC 163
Query: 203 NAVLDF 208
++++D
Sbjct: 164 SSLIDM 169
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++ Q++ A+ ++ + + S + N Y + AC+ G +H I
Sbjct: 196 SMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAIS 255
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + L+ Y + + ++FN + P V+ +T++I +K GF ++++ +
Sbjct: 256 LGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQL 315
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KPN TLV VL ACS G
Sbjct: 316 FEEMVRKGLKPNHITLVGVLHACSHSG 342
>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Cucumis sativus]
Length = 603
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F+ + H ++P P++++ +L+ + P A+ L+ +ML P N +TF
Sbjct: 70 VRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEMLRSPVVPNDFTFA 129
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
A+KACS+ + G HAHV +G+ +I + +SL+ Y D+ A +FNS+
Sbjct: 130 TAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCK 189
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAI 186
++V+WT++I+ ++ EA+ +F PN L SV+SAC+SLG GK +
Sbjct: 190 NIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVM 249
Query: 187 HAHSL 191
H ++
Sbjct: 250 HGAAI 254
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ H+ +K G L++ N L++ YV + I +AHQ+F+ + P+VV+WT++++G
Sbjct: 44 ISTHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDN 103
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G A+ +F + V PN T + + ACS L + + G+ HAH NI++
Sbjct: 104 GQPSTALFLFGEMLRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVC 163
Query: 203 NAVLDF 208
++++D
Sbjct: 164 SSLIDM 169
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++ Q++ A+ ++ + + S + N Y + AC+ G +H I
Sbjct: 196 SMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAIS 255
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + L+ Y + + ++FN + P V+ +T++I +K GF ++++ +
Sbjct: 256 LGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQL 315
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KPN TLV VL ACS G
Sbjct: 316 FEEMVRKGLKPNHITLVGVLHACSHSG 342
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-------YNHYTFTQA 72
++ AQ+ + P H+ N ++K Q+ ++A+ +Y +ML CP+S + +T+
Sbjct: 67 RVFAQV-RDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFL 125
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKAC A + G ++H HV++ G +QNSL+ Y D+ AH++F+ + DV
Sbjct: 126 LKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDV 185
Query: 133 V-------------------------------TWTTIISGLSKCGFHKEAIDMFCGIDV- 160
V TWT ++SG + G + A+D F +
Sbjct: 186 VSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE 245
Query: 161 --KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+P+ ++V+VL AC+ LG+ +LG+ I+A+ R
Sbjct: 246 GFEPDDVSIVAVLPACAQLGALELGRWIYAYCKR 279
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ + M + + L AC+ A + G I+A+ ++G L I N+L+
Sbjct: 234 GAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALM 293
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNA 164
Y I A Q+F+ + DV++W+T+I GL+ G EA+ +F ++ V+PN
Sbjct: 294 EMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNV 353
Query: 165 NTLVSVLSACSSLG 178
T V +LSACS G
Sbjct: 354 ITFVGLLSACSYAG 367
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-------YNHYTFTQA 72
++ AQ+ + P H+ N ++K Q+ ++A+ +Y +ML CP+S + +T+
Sbjct: 67 RVFAQV-RDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFL 125
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKAC A + G ++H HV++ G +QNSL+ Y D+ AH++F+ + DV
Sbjct: 126 LKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDV 185
Query: 133 V-------------------------------TWTTIISGLSKCGFHKEAIDMFCGIDV- 160
V TWT ++SG + G + A+D F +
Sbjct: 186 VSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE 245
Query: 161 --KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+P+ ++V+VL AC+ LG+ +LG+ I+A+ R
Sbjct: 246 GFEPDDVSIVAVLPACAQLGALELGRWIYAYCKR 279
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ + M + + L AC+ A + G I+A+ ++G L I N+L+
Sbjct: 234 GAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALM 293
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNA 164
Y I A Q+F+ + DV++W+T+I GL+ G EA+ +F ++ V+PN
Sbjct: 294 EMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNV 353
Query: 165 NTLVSVLSACSSLG 178
T V +LSACS G
Sbjct: 354 ITFVGLLSACSYAG 367
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 34/199 (17%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+L+ SS P +A+ +Y +M++ N Y+F LK+C+ + A +
Sbjct: 22 ETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFE 81
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYV------------------------------- 112
+G +IHA V+K G D ++ SL+ Y
Sbjct: 82 EGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYA 141
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
+ D SA ++F+ + DVV+W +I+G + G ++EA+++F + +V+P+ TLVS
Sbjct: 142 SRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVS 201
Query: 170 VLSACSSLGSRKLGKAIHA 188
V+SAC+ GS +LG+ +H+
Sbjct: 202 VVSACAQSGSIELGRQVHS 220
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 5/166 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T ++ + A+ L+ +ML N T L AC+ A G IH ++ K
Sbjct: 270 NTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDK 329
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G ++ ++ SL+ Y DI +AHQ+FNS+++ + +W +I G + G A
Sbjct: 330 KLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAF 389
Query: 153 DMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
D+F G V+P+ T V +LSACS G LG+ I ++ N
Sbjct: 390 DLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYN 435
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T + AC+ + + + G ++H+ V
Sbjct: 165 NAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDD 224
Query: 95 ----YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+G + I N+L+ Y D+ +A +F + DVV+W T+I G + +KE
Sbjct: 225 DDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKE 284
Query: 151 AIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN--ENNIILDNAV 205
A+ +F + PN TL+SVL AC+ LG+ +G+ IH + + L N L ++
Sbjct: 285 ALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSL 344
Query: 206 LD 207
+D
Sbjct: 345 ID 346
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-------YNHYTFTQA 72
++ AQ+ + P H+ N ++K Q+ ++A+ +Y +ML CP+S + +T+
Sbjct: 67 RVFAQV-RDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFL 125
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKAC A + G ++H HV++ G +QNSL+ Y D+ AH++F+ + DV
Sbjct: 126 LKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDV 185
Query: 133 V-------------------------------TWTTIISGLSKCGFHKEAIDMFCGIDV- 160
V TWT ++SG + G + A+D F +
Sbjct: 186 VSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE 245
Query: 161 --KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+P+ ++V+VL AC+ LG+ +LG+ I+A+ R
Sbjct: 246 GFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKR 279
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ + M + + L AC+ + G I+A+ ++G L I N+L+
Sbjct: 234 GAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALM 293
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNA 164
Y I A Q+F+ + DV++W+T+I GL+ G EA+ +F ++ V+PN
Sbjct: 294 EMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNV 353
Query: 165 NTLVSVLSACSSLG 178
T V +LSACS G
Sbjct: 354 ITFVGLLSACSYAG 367
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
Y + L ACS+ + G +IHAH+++YGH D + N L+ YV + +AH++F+
Sbjct: 250 YILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDG 309
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ ++++WTT++SG + HKEA+++F + +KP+ S+L++C+SL + + G
Sbjct: 310 MPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFG 369
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+HA++++ N+ + N+++D
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLID 393
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGL--EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
+S N Y + ++ACS + + ++ + ++K D+++ L+ FY+ +I
Sbjct: 142 NSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDY 201
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A +F+++ VTWTT+ISG K G ++ +F + +V P+ L +VLSACS
Sbjct: 202 ARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSI 261
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
L + GK IHAH LR +E + L N ++D
Sbjct: 262 LPFLEGGKQIHAHILRYGHEKDASLMNVLID 292
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 8/169 (4%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P +I++ TLL Q+S + A+ L+ M + + + L +C+ HA + G
Sbjct: 310 MPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFG 369
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA+ IK +D ++ NSL+ Y + A ++F+ DVV + +I G S+
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRL 429
Query: 146 GFHKE---AIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G E A+++F + ++P+ T VS+L A +SL S L K IH
Sbjct: 430 GTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHG 478
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K+ I N++ Q S + A+ L+ ++ + +TF + A + Q G
Sbjct: 515 MKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLG 574
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E H ++K G + +I N+LL Y AH+ F+S DVV W ++IS +
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANH 634
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G ++A+ M + ++PN T V VLSACS G
Sbjct: 635 GEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAG 670
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF L+A + + +IH + K+G DIF ++L+ Y + + +F+ +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEM 515
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGK 184
D+V W ++ SG + ++EA+++F + + +P+ T V +++A +L S +LG+
Sbjct: 516 KVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQ 575
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
H L+ E N + NA+LD
Sbjct: 576 EFHCQLLKRGLECNPYITNALLD 598
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +I G D ++ N L++ Y + A ++F + ++VTW+T++S + GF
Sbjct: 66 VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125
Query: 148 HKEAIDMFCGI----DVKPNANTLVSVLSACSSL 177
++E++ +F PN L S + ACS L
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACSGL 159
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+L+ ++ QS+ + A L+ +++ N Y+ + L+AC+ G +IH H
Sbjct: 331 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 390
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK GH D+F+ N+L+ FY D+ S+ +IF+S+ + V+W TI+ G S+ G +EA+
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 450
Query: 153 DMFCGIDVKPNANTLV---SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+FC + T V SVL AC+S S + IH ++ N+ ++ N+++D
Sbjct: 451 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLID 508
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++ +++ P+NA +++KM N + T LKA + G IH
Sbjct: 230 VWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCA 289
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK + + + +LL Y DI A F + + DV+ + +IS ++ +++A
Sbjct: 290 IKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAF 349
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++F + V PN +L SVL AC+++ GK IH H+++ +E+++ + NA++DF
Sbjct: 350 ELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF 408
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ TL++ Q + A L+ ++ N + T LK A
Sbjct: 121 RMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGL 180
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H+ K GH H+ F+ + L+ Y + A +FN +V D V WT ++S S+
Sbjct: 181 AGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE 240
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ A +F + V KPN L SVL A L S LGK IH +++ LN+ +
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHV 300
Query: 202 DNAVLD 207
A+LD
Sbjct: 301 GGALLD 306
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +QS + A+ ++ +M T++ L+AC+ + + +IH + K
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D I NSL+ Y I A ++F ++ D+++W IISG + G +A+++
Sbjct: 494 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALEL 553
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+ N T V++LS CSS G
Sbjct: 554 FDRMNKSNVESNDITFVALLSVCSSTG 580
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 106/198 (53%), Gaps = 12/198 (6%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
F+Q+++ P NT+++ + + A+ Y +M +++T+ LK
Sbjct: 45 FRQMDE--------PGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLK 96
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ A ++G+++HAH++K G +D+F+QNSL+ Y +I +F + V +
Sbjct: 97 ACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVAS 156
Query: 135 WTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W+ +I+ + G + + + + + + LVSVLSAC+ LG+ LG+++H
Sbjct: 157 WSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFL 216
Query: 191 LRNLNENNIILDNAVLDF 208
LRN++ N+I++ ++++
Sbjct: 217 LRNVSGLNVIVETSLIEM 234
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC+ A G +H +++ ++ ++ SL+ Y+ ++ +F + +
Sbjct: 197 LSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNK 256
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++++ +ISGL+ G+ +E + +F + ++P+ V VL+ACS G
Sbjct: 257 LSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAG 305
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 5/180 (2%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+ NT+++ + + P+ AI +YN + + YT +KAC L +G +IH
Sbjct: 45 YTWNTIIRGYLEGNDPEEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQ 104
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS--KCGFHK 149
+ K G ++ IQ +LL Y + QIF+ + D+V W +I+ + C +
Sbjct: 105 IFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKV 164
Query: 150 EAI--DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ DM +VKPN T VS+LS CSSL + + GKA+H + +NL E ++ + NA++D
Sbjct: 165 REVSYDMVSS-NVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALID 223
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKIP---QPHILNTLLKL---------LTQ--SST 46
+FV L+P + + QIH QI K+ + I LL + L Q
Sbjct: 83 VFVIKACGLRPVI--LEGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEM 140
Query: 47 PQNAIPLYNKML------NCP-----SSY---------NHYTFTQALKACSLAHAHQKGL 86
PQ + ++N ++ NCP SY N T L CS A ++G
Sbjct: 141 PQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGK 200
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H +V K D+F+ N+L+ Y I A Q+F + +VV+WT++I+G S
Sbjct: 201 AVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNN 260
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILD 202
EA+ F ++ ++P+ T++ V+ CS L S +LG+ I + ++ L + + +
Sbjct: 261 CPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIA 320
Query: 203 NAVLDF 208
N ++D
Sbjct: 321 NVLMDM 326
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L+ + ++ P A+ + +M + T + CS + + G I +V+K
Sbjct: 251 SLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKT 310
Query: 96 GHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + I N L+ + +I A QIF+ + +V+WT +I GL+ G A+
Sbjct: 311 GLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVR 370
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
FC + KP++ +S+LSACS G
Sbjct: 371 FCQMQREGFKPDSLVFLSLLSACSHAG 397
>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
Length = 625
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 9/189 (4%)
Query: 29 PQPHILNTLLKLLTQSS----TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
P+ NTL++ P A+ LY L S + YTF LKAC+ A Q+
Sbjct: 109 PEAFDYNTLMRGHVSGGGGDRDPAAALRLYIDGLEAGVSPDSYTFPFVLKACAQLAALQE 168
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGL 142
G ++ AH++K G HD +QNSL+ FY A F+ V + V+W+ +++
Sbjct: 169 GRQLQAHIVKLGFQHDEHVQNSLISFYGKCGAPAMARLAFDRVEAEERTTVSWSALLAAY 228
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+K G E + F + +P+ +++VS LSAC+ LGS G+++H LRN N
Sbjct: 229 TKAGLWGECLASFGSMMLDGWRPDESSMVSALSACAHLGSFDAGRSVHCALLRNTARLNT 288
Query: 200 ILDNAVLDF 208
I+ ++LD
Sbjct: 289 IMLTSLLDM 297
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 84/212 (39%), Gaps = 39/212 (18%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIP---QPHILNTLLKLLTQSSTPQNAIPLYNKML---- 58
LK+ + ++ Q+ A I+K+ H+ N+L+ + P A ++++
Sbjct: 157 LKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGKCGAPAMARLAFDRVEAEER 216
Query: 59 -------------------NCPSSY----------NHYTFTQALKACSLAHAHQKGLEIH 89
C +S+ + + AL AC+ + G +H
Sbjct: 217 TTVSWSALLAAYTKAGLWGECLASFGSMMLDGWRPDESSMVSALSACAHLGSFDAGRSVH 276
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
+++ + + SLL Y I A F+++ ++ ++SGL+ G +
Sbjct: 277 CALLRNTARLNTIMLTSLLDMYAKCGSIEKAAAAFDAMDDKSAWAYSAMLSGLALHGDGR 336
Query: 150 EAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
+A+ +F + + P+A V VL+ACS G
Sbjct: 337 KALQVFDAMVREGHAPDAAAYVGVLNACSRAG 368
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 50 AIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ LY++ML + YTF L+ C +G E+H HV++YG+ DI + N+L+
Sbjct: 179 AMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALI 238
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
YV D+ SA +F+ + D+++W +ISG + G E +++F G+ V P+
Sbjct: 239 TMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLM 298
Query: 166 TLVSVLSACSSLGSRKLGKAIHAH 189
TL SV+SAC LG R+LG+ IHA+
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAY 322
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T + AC L + G +IHA+VI G DI + NSL Y+ A ++F+ +
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM 358
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
D+V+WTT+ISG +AID + +D VKP+ T+ +VLSAC++LG G
Sbjct: 359 ERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV 418
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H +++ + +I+ N +++
Sbjct: 419 ELHKLAIKARLISYVIVANNLIN 441
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P AI Y M + T L AC+ G+E+H IK + + + N+
Sbjct: 379 PDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN 438
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--CGIDVKPNA 164
L++ Y K I A IF+++ +V++WT+II+GL EA+ + ++PNA
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNA 498
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
TL + L+AC+ +G+ GK IHAH LR + L NA+LD
Sbjct: 499 ITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLD 541
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L N M + + F ++ C A ++G ++++ + + + N+
Sbjct: 76 EEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAF 135
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
L +V ++ A +F + ++ +W ++ G +K G+ EA+ ++ + VKP+
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T VL C + GK +H H +R E +I + NA++
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALI 238
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G EIHAHV++ G D F+ N+LL YV + +A FNS DV +W +++G S+
Sbjct: 517 GKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSE 575
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
G +++F + V+P+ T +S+L CS
Sbjct: 576 RGQGSMVVELFDRMVKSRVRPDEITFISLLCGCS 609
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 7/181 (3%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I P+ H+ N L+ L++S P+ + +Y +M + + ++F LKA S + +
Sbjct: 81 LIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVE 140
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
GLEIH K G D F+Q L+ Y I A +F+ + DVVTW+ +I G +
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A+ +F + +V+P+ L +VLSAC G+ GK IH + ENNI++
Sbjct: 201 SGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIM----ENNIVV 256
Query: 202 D 202
D
Sbjct: 257 D 257
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+S +PQ A+ L+N+M + + T + AC+ A + IH V K G +
Sbjct: 332 ESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALP 391
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
I N+L+ Y + A +IF+ + +V++WT +IS + G A+ F ++
Sbjct: 392 INNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDEN 451
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
++PN T V VL ACS G + G+ I +S+ +NE+NI
Sbjct: 452 IEPNGITFVGVLYACSHAGLVEEGRKIF-YSM--INEHNI 488
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 34/199 (17%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
QS +A+ L+ +M N + + L AC A G IH +++ + D
Sbjct: 200 QSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPH 259
Query: 103 IQNSLLHFYVT-------------------------------VKDIFSAHQIFNSVVFPD 131
+Q++L+ Y + + I +A +FN +V D
Sbjct: 260 LQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+V W+ +ISG ++ +EA+++F + +KP+ T++SV++AC+ LG+ K IH
Sbjct: 320 LVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHL 379
Query: 189 HSLRNLNENNIILDNAVLD 207
+N + ++NA+++
Sbjct: 380 FVDKNGFGGALPINNALIE 398
>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g46460, mitochondrial; Flags: Precursor
gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 5/199 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
L F +++ ++P ++++ T++ L Q+ A+ L+ ML C FT
Sbjct: 170 LQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFT 229
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ AC+ A A G+++H +IK G L++ ++ SL+ FY K I + ++F+ V
Sbjct: 230 CVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHE 289
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
V WT ++SG S H++A+ +F G+ + PN +T S L++CS+LG+ GK +H
Sbjct: 290 QVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMH 349
Query: 188 AHSLRNLNENNIILDNAVL 206
+++ E + + N+++
Sbjct: 350 GVAVKLGLETDAFVGNSLV 368
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
++H Q+ + LL + + ++A+ +++ ML N TF L +CS
Sbjct: 286 KVHEQVA------VWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSAL 339
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G E+H +K G D F+ NSL+ Y ++ A +F + +V+W +II
Sbjct: 340 GTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSII 399
Query: 140 SGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
G ++ G K A +F ++ +P+ T +LSACS G + G+ + + +N
Sbjct: 400 VGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGIN 458
Score = 45.1 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
NS++H Y+ + A ++F + +V++WTT+I GL + EA+D+F + +K
Sbjct: 163 NSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIK 222
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHA 188
+ V++AC++ + +G +H
Sbjct: 223 STSRPFTCVITACANAPAFHMGIQVHG 249
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 42/207 (20%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS---SYNHYTFTQALKACSLAHAH 82
I P N +++ + P+++I LY+ M C S + N +T T L+ACS A A
Sbjct: 92 ISHPTVFATNNMIRCFVKGDLPRHSISLYSHM--CRSFVAAPNKHTLTFVLQACSNAFAI 149
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF------------NSVVF- 129
++G ++ HVIK G + D+F++N+L+H Y T + SA Q+F NS++
Sbjct: 150 REGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVG 209
Query: 130 -------------------PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTL 167
DV++W TIISG + G ++A+D F + ++PN L
Sbjct: 210 FVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAIL 269
Query: 168 VSVLSACSSLGSRKLGKAIH--AHSLR 192
VS+L+A + LG+ + GK IH A+SLR
Sbjct: 270 VSLLAAAAQLGTLEYGKRIHSIANSLR 296
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 36/242 (14%)
Query: 3 VNGLKSLKPTLSFKQLNQIHAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNC 60
V+ L + ++ F L +I P+ + NT+++ + S+ P+ A+ LY++ML+
Sbjct: 46 VSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHH 105
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
+N YTF LKACS A + +IH +IK G +++ NSLL Y I SA
Sbjct: 106 SIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSA 165
Query: 121 H-------------------------------QIFNSVVFPDVVTWTTIISGLSKCGFHK 149
H +IF ++ +V++WT++I G + G HK
Sbjct: 166 HVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHK 225
Query: 150 EAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
EA+ + + +KP+ TL LSAC+ LG+ + GK IH + +N + + +L A++
Sbjct: 226 EALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALI 285
Query: 207 DF 208
D
Sbjct: 286 DM 287
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ ++++ +++ ++ + A+ L +ML + T + +L AC+ A ++G
Sbjct: 203 MPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQG 262
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH ++ K D + +L+ YV ++ A +F+ + V TWT II G +
Sbjct: 263 KWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVH 322
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
G EA+D F + +KP + T +VL+ACS G + GK++
Sbjct: 323 GKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSL 366
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 33 ILNTLLKLLTQS-STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+ NTL++ +Q+ + N+ Y ML + N +TF LK C+ + + G +H
Sbjct: 91 LFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGC 150
Query: 92 VIKYGHLHDIFIQNSLLHFYVTV-KDIFS-AHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
V+K+G D+ + N+L+H Y + +D F A ++F+ D VTW+ +I+G + G
Sbjct: 151 VVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSS 210
Query: 150 EAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
A+D+F + V P+ T+VSVLSAC+ LG+ +LGK + ++ + ++ L NA++
Sbjct: 211 RAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALI 270
Query: 207 D 207
D
Sbjct: 271 D 271
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + T L AC+ A + G + ++V K + + N+L+
Sbjct: 211 RAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALI 270
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
+ ++ A ++F + +V+WT++I+GL+ G +A+ +F + + P+
Sbjct: 271 DMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDV 330
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ VLSACS G G+ RN +
Sbjct: 331 AFIGVLSACSHSGLVDKGRYYFGSMERNFS 360
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 32/192 (16%)
Query: 28 IPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
IP+ + N L+ + + AI L+ +M S ++T + GL
Sbjct: 259 IPKSVELCNALIDMFAKCGNVDKAIKLFRQM----DSRTIVSWTSVIA----------GL 304
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA----------HQIFNSV-----VFPD 131
+H + L D ++N + V + SA F S+ + P
Sbjct: 305 AMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPK 364
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
V + ++ L + GF KEA + + +PN ++++AC + G KLG++I +
Sbjct: 365 VEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELI 424
Query: 192 RN--LNENNIIL 201
++ ++E+N +L
Sbjct: 425 KSEPMHESNYVL 436
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 104/189 (55%), Gaps = 7/189 (3%)
Query: 26 IKIPQPHILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
I+ P + N L++ +S+ Q+AI LY++ML S + +TF LKAC+ A
Sbjct: 86 IENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALS 145
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G +IHA ++K G D++I NSL+HFY T + A +F+ + +V+W +I
Sbjct: 146 EGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 144 KCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE---NN 198
+ G A+++F + +P+ T+ S+ +AC+ +GS LG H L+ + N+
Sbjct: 206 RFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVND 265
Query: 199 IILDNAVLD 207
++L+ +++D
Sbjct: 266 VLLNTSLVD 274
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIK---YGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+ YT AC+ + G+ H ++K ++D+ + SL+ Y + A
Sbjct: 227 DGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELAL 286
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGIDVK---PNANTLVSVLSACSSL 177
Q+F+ + DV +W ++I G S G A++ F C + + PNA T V VLSAC+
Sbjct: 287 QLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHG 346
Query: 178 GSRKLGK 184
G G+
Sbjct: 347 GLVSEGR 353
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 87 EIHAHVIKYG---HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
++HA I+ H + F+ + +LHF ++ D+ A ++F+ + P+ W +I +
Sbjct: 44 QLHAQTIRTTSSHHPNTFFLYSRILHF-SSLHDLRYAFRVFHQIENPNSFMWNALIRACA 102
Query: 144 KCGFHKE-AIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ K+ AI ++ + V + +T VL AC+ L + G+ IHA L+ +++
Sbjct: 103 RSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSD 162
Query: 199 IILDNAVLDF 208
+ ++N+++ F
Sbjct: 163 VYINNSLVHF 172
>gi|255543272|ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548660|gb|EEF50151.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 686
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 3/174 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L +L + P + L+ +ML+ S ++ AL+AC + + G +H K
Sbjct: 169 LARLYLMQNKPDVVLSLFYQMLDFNSLFDPVALATALRACGMLRSMHHGKILHGFAKKCR 228
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
DI + NSLL YV I A F+ + D+++WT II+G K G EA+ +F
Sbjct: 229 LEFDILVSNSLLKMYVDCHCIEDARATFHQMPTKDIISWTEIINGYVKIGEFNEALKLFR 288
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ ++P++ +L ++L AC+ + KLG+ IHA+ LRN E N++L NA++D
Sbjct: 289 QMNIAGIRPDSLSLSTILPACARPAAHKLGREIHAYLLRNGIELNLMLQNALID 342
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + + + L AC+ AH+ G EIHA++++ G ++ +QN+L+
Sbjct: 283 ALKLFRQMNIAGIRPDSLSLSTILPACARPAAHKLGREIHAYLLRNGIELNLMLQNALID 342
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---- 165
YV + SA IF + DV++WT +I G S G + +++F ++ P+
Sbjct: 343 MYVKSGFMESASLIFVRMKEKDVISWTVMILGFSLHGQGELGVELFRRLEKDPSIEIDQY 402
Query: 166 TLVSVLSACSSLGSRKLGK 184
+VL C++ + GK
Sbjct: 403 IYAAVLRCCTTACMVEEGK 421
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + P +A+ +Y ML + + TF + L A L+ G +IHA +K
Sbjct: 66 NNLIHSHLTNRDPFSALSIYLHMLLRGALPDRRTFPRVLNASRLSTNLFLGKQIHAQALK 125
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D ++ +SL+ FY + +A +F++ + V+WT L++ + D+
Sbjct: 126 FGFSSDPYVISSLIDFYGHLDSTDAARSLFDNSPSKNSVSWTV----LARLYLMQNKPDV 181
Query: 155 FCGIDVKP-------NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + + L + L AC L S GK +H + + E +I++ N++L
Sbjct: 182 VLSLFYQMLDFNSLFDPVALATALRACGMLRSMHHGKILHGFAKKCRLEFDILVSNSLL 240
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P NT+++ S + A+ LY +ML +++T+ LKACSL A ++G
Sbjct: 91 IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG 150
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++IHAHV G D+F+QN L+ Y I A +F + V +W++II +
Sbjct: 151 VQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASV 210
Query: 146 GFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
E + DM + + LVS LSAC+ LGS LG+ IH LRN++E N+++
Sbjct: 211 EMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVV 270
Query: 202 DNAVLDF 208
+++D
Sbjct: 271 KTSLIDM 277
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111
PL + LN + +N + LK C +K +HAH++K G +D F ++L+
Sbjct: 19 PLQSSELN--AKFNEQGWLSLLKRCKSMEEFKK---VHAHILKLGLFYDSFCGSNLVASC 73
Query: 112 VTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
+ + A IF + P + T+I G +EA+ ++ + ++P+ T
Sbjct: 74 ALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFT 133
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
VL ACS L + K G IHAH E ++ + N ++
Sbjct: 134 YPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLI 173
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC+ + G IH +++ ++ ++ SL+ YV + +F ++ +
Sbjct: 239 ALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKN 298
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
++T +I+GL+ G +EA+ +F + + P+ V VLSACS G K G
Sbjct: 299 RYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEG 353
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +L+ + + + + + ++ M + N Y++T + ++ ++ L + + +
Sbjct: 270 VKTSLIDMYVKCGSLEKGLCVFQNM----AHKNRYSYTVMIAGLAIHGRGREALRVFSDM 325
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGF 147
++ G D + +L + Q FN + F P + + ++ + + G
Sbjct: 326 LEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGM 385
Query: 148 HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
KEA D+ + +KPN S+LSAC + ++G+ I A ++ LN++N
Sbjct: 386 LKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGE-IAADNIFKLNKHN 435
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ + S +PQ AI L+ +M N+ TF LKAC+ Q+G + HA IK
Sbjct: 100 NFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIK 159
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D++++N+L++FY + K + A ++F+ + +V+W +I+ + EAID
Sbjct: 160 CGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDY 219
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +P+ T+V +LSAC+ LG+ LG+ +H+ + N+ L A +D
Sbjct: 220 FLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVD 275
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
AI + KM N + T L AC+ G +H+ V+ G + ++ + +
Sbjct: 214 DEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAF 273
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y D+ A +FN + V TW+ +I GL++ GF EAI++F + + PN
Sbjct: 274 VDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMTSSPIVPNH 333
Query: 165 NTLVSVLSACSSLG 178
T + VL ACS G
Sbjct: 334 VTFIGVLCACSHAG 347
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD---------IFSAHQIFNSVVFPDVVTWT 136
EIHA ++ G +D F LL +F H F+S P W
Sbjct: 47 FEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCH--FHSATMP----WN 100
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
II G S +EAI +F + V+PN T +L AC++L + + GK HA +++
Sbjct: 101 FIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKC 160
Query: 194 LNENNIILDNAVLDF 208
+ ++ + N +++F
Sbjct: 161 GLDLDVYVRNTLINF 175
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q AI L+ M + P NH TF L ACS HA ++ +
Sbjct: 308 LAQHGFANEAIELFTNMTSSPIVPNHVTFIGVLCACS-----------HAGLVDKSY--- 353
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
H++ ++ ++ + P ++ + +++ L + G KEA ++ + V
Sbjct: 354 --------HYFNLMERVYG--------IKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPV 397
Query: 161 KPNANTLVSVLSACSS 176
+P+ ++LSACS
Sbjct: 398 EPDPIVWRTLLSACSG 413
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 10/186 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLE 87
PQ N++++ QS +P AI YN+ML + S + +TF+ LKAC A +K E
Sbjct: 72 PQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEE 131
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +I+ G+ D+ + L+ Y + A +F+++ D+V W +IS S+ G+
Sbjct: 132 VHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGY 191
Query: 148 HKEAIDMFCGIDVKPNAN------TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
H+EA+ ++ D N N TLV +LS+CS +G+ +G +H + N+ +
Sbjct: 192 HQEALRVY---DYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFV 248
Query: 202 DNAVLD 207
NA++D
Sbjct: 249 GNALID 254
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ Q A+ +Y+ M N + +T L +CS A G+++H +
Sbjct: 180 NAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASE 239
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L ++F+ N+L+ Y + A ++FN + D TW ++I G GF EAI
Sbjct: 240 KGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYF 298
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + V+PN+ + +L CS G
Sbjct: 299 FNQMLEAGVRPNSIAFLGLLCGCSHQG 325
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I N++ + ++S+ P L+ ++L ++YTF LKAC++A A ++G ++
Sbjct: 94 PDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQL 153
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K G ++++ +L++ Y +D+ +A +F+ +V P VV + +I+G ++
Sbjct: 154 HCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRP 213
Query: 149 KEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
EA+ +F G ++KPN TL+SVLS+C+ LGS LGK IH ++
Sbjct: 214 NEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYA 258
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I +P ++ N ++ + + P A+ L+ +M N T L +C+L +
Sbjct: 191 RIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDL 250
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + K+G + + +L+ + + A IF ++ + D W+ +I +
Sbjct: 251 GKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYAN 310
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G + ++ MF + +V+P+ T + +L+ACS G + G+
Sbjct: 311 HGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGR 353
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 6/190 (3%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHA 81
+ I P + N +++ SS P NA+ Y M N + T + ALKAC+ A A
Sbjct: 59 RYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALA 118
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+ +++H+ ++++G D+ +Q +LL Y + D+ A ++F+ + PD+ +W +I+G
Sbjct: 119 RSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAG 178
Query: 142 LSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ +AI F + V +PNA T+ L ACS LG+ K G+++H + + +
Sbjct: 179 FAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNS 238
Query: 198 NIILDNAVLD 207
N+ + N V+D
Sbjct: 239 NVQVCNVVID 248
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQ 83
++PQP I N L+ Q S P +AI + +M ++ N T AL ACS A +
Sbjct: 163 EMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALK 222
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-NSVVFPDVVTWTTIISGL 142
+G +H ++++ ++ + N ++ Y + A+ +F N ++TW T+I
Sbjct: 223 EGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAF 282
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG-KAIHAHSLRNLNEN 197
+ G +A+D+F + + P+A + ++VL AC+ G + G K ++ + R L N
Sbjct: 283 AMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPN 341
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 49/112 (43%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ A+ L+ K+ S + ++ L AC+ A + GL++ + +
Sbjct: 276 NTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQ 335
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
G +I S++ + A+ I +S+ FP++V W T++ G
Sbjct: 336 RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYG 387
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+ NT+++ ++S P+ AI LY M+ + N++TF L +C+ + + G E+H+H
Sbjct: 1 MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+IK+G D+F++N+L+H Y ++ A +F+ + D+V++ T+I G ++ + A
Sbjct: 61 IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120
Query: 152 IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
+ +F G + TLV+VLSAC+ LG+ LGK ++ + N + N IL AV+D
Sbjct: 121 LCLF-GEMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 18/162 (11%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++K + + P++A+ L+ +M N + T L AC+ A G ++ I+
Sbjct: 105 NTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIE 160
Query: 95 YGHLHDIFIQNSLL-----HFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGF 147
G +F QN++L Y I SA +IF V + ++I+GL++ G
Sbjct: 161 NG----VFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGL 216
Query: 148 HKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+ AI +F +KP+ T V VL AC G + GK +
Sbjct: 217 GETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKL 258
>gi|224072451|ref|XP_002303738.1| predicted protein [Populus trichocarpa]
gi|222841170|gb|EEE78717.1| predicted protein [Populus trichocarpa]
Length = 663
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+LKL + P AI ++ +M+ + + A AC L + + G +H K+
Sbjct: 166 ILKLYLMENKPDLAINVFYQMVELNARIDSVVLITAAGACGLLKSVEHGRRVHDVARKFR 225
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
DI + NSLL + + + A FN + DV++WT II G K G EA+ +F
Sbjct: 226 LESDILVSNSLLKMQIDCQRMEDARGFFNQMTTKDVISWTEIICGYVKKGEFNEALKLFR 285
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ +KP++ ++ SVL AC+ + K GK IH +SLRN +NN+I+ NA D
Sbjct: 286 KMNMDGIKPDSLSVSSVLPACARTVAHKNGKEIHGYSLRNGMDNNLIVQNATTD 339
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ KM + + + L AC+ AH+ G EIH + ++ G +++ +QN+
Sbjct: 280 ALKLFRKMNMDGIKPDSLSVSSVLPACARTVAHKNGKEIHGYSLRNGMDNNLIVQNATTD 339
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNAN 165
Y + A ++F + DV++WT +I G S G + +++FC ++ V+ +
Sbjct: 340 MYAKSGLVDYALKVFERMKKRDVISWTVMILGFSLHGKGELGVELFCRMEKDQRVEADQF 399
Query: 166 TLVSVLSACSSLGSRKLGK 184
T +VL C++ + GK
Sbjct: 400 TYAAVLHCCTAACMVEEGK 418
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 7/172 (4%)
Query: 23 AQII--KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
AQ+I K+P+ +++ L+ Q A+ L KM + N T+T L+ C+
Sbjct: 251 AQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTT 310
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
A + G ++H ++I+ G+ +I++ N+L+ Y + A ++F + DVVTWT +
Sbjct: 311 PLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAM 370
Query: 139 ISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
++G ++ GFH EAID+F + +KP+ T S L++CSS + GK+IH
Sbjct: 371 VTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIH 422
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ +M + TFT AL +CS Q+G IH ++ G+ D+++Q++L+
Sbjct: 383 AIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVS 442
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + A +FN + +VV WT +I+G ++ G +EA++ F + +KP+ T
Sbjct: 443 MYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVT 502
Query: 167 LVSVLSACSSLGSRKLGK 184
SVLSAC+ +G + G+
Sbjct: 503 FTSVLSACTHVGLVEEGR 520
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 37/230 (16%)
Query: 14 SFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLY---------------- 54
S +Q ++HA I+K P ++ NTLL + + + +A ++
Sbjct: 111 SLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIE 170
Query: 55 -----NKMLNCPSSY----------NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
N+ L Y + TF L A + Q G ++H + K G
Sbjct: 171 AFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLEL 230
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
+ + SL+ Y DI A IF+ + +VVTWT +I+G ++ G A+++ +
Sbjct: 231 EPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQ 290
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+V PN T S+L C++ + + GK +H + +++ I + NA++
Sbjct: 291 QAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALI 340
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ +L + + A+ + N M+ + F L+ C+ + ++G E+HA ++K G
Sbjct: 68 VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ +++N+LL Y + A ++F+ + ++V+WT +I + EA +
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187
Query: 158 IDV---KPNANTLVSVLSACSSLGSRKLGKAIH 187
+ + KP+ T VS+L+A ++ ++G+ +H
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 37/210 (17%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + N +++ +QS TP + LYN+M+ + N +T++ + C+ + ++G
Sbjct: 76 IENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREG 135
Query: 86 LEIHAHVIKYGHLHDIFIQ----------------------------------NSLLHFY 111
++H V+ G+ ++F++ NSLL Y
Sbjct: 136 EQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGY 195
Query: 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLV 168
V D+ A +IF+ + +VV+WTT+I+G ++ G K+A+ +F + VK + LV
Sbjct: 196 VRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALV 255
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ LSAC+ LG KLG IH++ L+ N
Sbjct: 256 AALSACAELGDLKLGTWIHSYIDERLHAGN 285
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ T++ Q + A+ L+++M + AL AC+ +
Sbjct: 210 EMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKL 269
Query: 85 GLEIHAHVIKYGHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
G IH+++ + H + + + NSL+H Y + I A+++F + ++WT++I+
Sbjct: 270 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 329
Query: 141 GLSKCGFHKEAIDMF-----CGIDV-KPNANTLVSVLSACSSLGSRKLGK 184
G +K G +EA+ +F G D +P+ T + VL ACS G G+
Sbjct: 330 GFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGR 379
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IH +I G F+ LL FY+T ++ +AH++F + P W +I G S+
Sbjct: 36 QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSE 95
Query: 147 FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ ++++ + +PN T ++ C+ + G+ +H + N N+ +
Sbjct: 96 TPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRT 155
Query: 204 AVLDF 208
++++
Sbjct: 156 SLVNL 160
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 35/232 (15%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
KPT I +QI + P + N L++ + + P A Y +ML ++ TF
Sbjct: 62 KPTNLLGYAYGIFSQI-QNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITF 120
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+KA S G + H+ ++++G +D++++NSL+H Y I +A +IF + F
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF 180
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF----------------------C---GID----- 159
DVV+WT++++G KCG + A +MF C ID
Sbjct: 181 RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM 240
Query: 160 ----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V N +VSV+S+C+ LG+ + G+ + + +++ N+IL A++D
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVD 292
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N + +C+ A + G + +V+K ++ + +L
Sbjct: 231 EKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTAL 290
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNA 164
+ + DI A +F + D ++W++II GL+ G +A+ F + P
Sbjct: 291 VDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRD 350
Query: 165 NTLVSVLSACSSLGSRKLGKAIH 187
T +VLSACS G + G I+
Sbjct: 351 VTFTAVLSACSHGGLVEKGLEIY 373
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+PQ I N+++ ++++ P + LY +M++ + TFT LKACS
Sbjct: 43 KMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDM 102
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G I + +G+ D+F+ +S+L+ Y + A +F+ +V DVV+WTT+I+G ++
Sbjct: 103 GEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQ 162
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNII 200
G +AID++ + + + +V ++ AC+SLG K G ++H H + R +N +N++
Sbjct: 163 SGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVL 222
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ QS P +AI +Y M + + ++AC+ + GL +H H+++
Sbjct: 155 TMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRR 214
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D +Q SL+ Y + A ++F + + V++W +ISG ++ GF + +
Sbjct: 215 EMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASL 274
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+ KP+ +L+S LSAC+ +G+ K+GK++H H ++ L
Sbjct: 275 VEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRL 316
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ +L AC+ + G +H H++K +L D +L+ Y + A +F+ +
Sbjct: 288 SLISSLSACAQVGNLKVGKSLHGHIVKRLYL-DKVSGTALIDMYAKCGALTFARALFDQI 346
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D++ W +IS G EA+ +F + ++ P+ T S+LSACS G + G+
Sbjct: 347 EPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQ 406
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P ++ N +++ S Q +I LY ML + ++TF LKACS A Q
Sbjct: 66 QIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQL 125
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGL 142
G IH H G D+++ +LLH Y ++ A +FNS+ D+V W +I+
Sbjct: 126 GRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAF 185
Query: 143 SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
S H + I + V PN++TLVS+L + GKAIHA+ +RN +N+
Sbjct: 186 SFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNV 245
Query: 200 ILDNAVLDF 208
+L A+LD
Sbjct: 246 VLQTALLDM 254
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 6/165 (3%)
Query: 49 NAIPLYNKMLNCPSSYNH--YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
+A+ LY+ ML C N T L+AC+ ++G ++H H+IK G D + NS
Sbjct: 294 DALALYDDML-CIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNS 352
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPN 163
L+ Y + +A + ++ D V+++ IISG + G+ ++A+ +F + + P
Sbjct: 353 LISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPY 412
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T++++L ACS L + + G H +++ N+ + NA++D
Sbjct: 413 LETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDM 457
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L A+A +G IHA+ I+ ++ +Q +LL Y +F A +IF
Sbjct: 209 NSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIF 268
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSR 180
N+V + V W+ +I G +A+ DM C + P TL ++L AC+ L
Sbjct: 269 NTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDL 328
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVL 206
K GK +H H +++ + + + N+++
Sbjct: 329 KRGKKLHCHMIKSGMDLDTTVGNSLI 354
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++ +M + + T L ACS A Q G H + + G +D
Sbjct: 390 QNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTS 449
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGID 159
I N+++ Y I + +IF+ + D+++W T+I G G EA+ +F +
Sbjct: 450 ICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALG 509
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+KP+ TL++VLSACS G GK + +N N
Sbjct: 510 LKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFN 545
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPN 163
L ++++ +I A +F+ + P VV W +I + G +++I ++ + V P
Sbjct: 47 LARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPT 106
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHS 190
T +L ACSSL + +LG+ IH H+
Sbjct: 107 NFTFPFLLKACSSLQALQLGRLIHTHA 133
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 6/193 (3%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSL 78
QI +QI + P NT+++ +S P A+ LY +M ++C H T+ LKA +
Sbjct: 95 QIFSQI-QNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTH-TYPFLLKAIAK 152
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
++G ++H+ I+ G +F+QN+L+H Y SAH++F + ++VTW ++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+G + G EA+ +F + V+P+ T+VS+LSAC+ LG+ LG+ H + ++
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGL 272
Query: 196 ENNIILDNAVLDF 208
+ N+ NA+LD
Sbjct: 273 DGNLHAGNALLDL 285
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + P A+ L+ +M + +T L AC+ A G H +++K
Sbjct: 210 NSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK 269
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ N+LL Y I AH++F+ + VV+WT++I GL+ GF KEA+++
Sbjct: 270 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 329
Query: 155 FCGIDVK---PNANTLVSVLSACSSLG 178
F ++ K P+ T V VL ACS G
Sbjct: 330 FKELERKGLMPSEITFVGVLYACSHCG 356
>gi|357511223|ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500915|gb|AES82118.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 467
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 28 IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+PH I N+L++ + S P + LY+ M N++TF K+ S +H +
Sbjct: 69 IPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILPNNFTFPFLFKSLSDSHDFVQS 128
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++ HVIK G+++DI++ NSLL Y + + Q+F+ + DVV+WT +I G
Sbjct: 129 QCVYTHVIKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQRDVVSWTVMIMGYRNG 188
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G + +A+ +F + V PN T+V+ LSAC+S + ++G I RN E ++IL
Sbjct: 189 GKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWELDVILG 248
Query: 203 NAVLD 207
A++D
Sbjct: 249 TALID 253
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Query: 27 KIPQPHILNTLLKLLTQSSTPQ--NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ +++ + ++ + + +A+ ++ +M N T AL AC+ + A +
Sbjct: 169 EMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCAIEM 228
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ I V + G D+ + +L+ YV + ++F + +V T +I GL+
Sbjct: 229 GVWIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIKGLAL 288
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
+EA+ F ++ V+ + TLV+VLSACS G + G+ I
Sbjct: 289 AKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLVEKGRFI 333
>gi|31193917|gb|AAP44752.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108712239|gb|ABG00034.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 640
Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ LY ML + +TF Q L AC+ H +G ++HA ++++G ++ ++ +L
Sbjct: 134 RQALALYPCMLQAGAPPTQHTFAQLLSACASGRLHHQGTQLHAQLLRWGAGLNLVLKTAL 193
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
LH Y ++ AH + +S DVV WT II+G ++ G + A+ MF + V PNA
Sbjct: 194 LHMYCNCGNMGYAHTVLHSTPQTDVVLWTAIITGYARSGDLQSALQMFRSMTRAAVLPNA 253
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T +++SACSS + + G+ IHA + E++ + NA++D
Sbjct: 254 FTYAALISACSSFRALQPGRQIHARLFKFGLEHDTSVCNALVDL 297
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H + PQ ++ ++ +S Q+A+ ++ M N +T+ + ACS
Sbjct: 207 HTVLHSTPQTDVVLWTAIITGYARSGDLQSALQMFRSMTRAAVLPNAFTYAALISACSSF 266
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV-TVKDIFSAHQIFNSVVFPDVVTWTTI 138
A Q G +IHA + K+G HD + N+L+ Y + + F++V P+VV+WT +
Sbjct: 267 RALQPGRQIHARLFKFGLEHDTSVCNALVDLYSKSSSRLLDLLHTFHAVDKPNVVSWTAL 326
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+GL+ G +EA F + V PN+ T+ ++L SS + + IH + L+
Sbjct: 327 IAGLACHGRDEEAFLAFSQMRLSGVLPNSFTVSTLLKGSSSSLAFLHARKIHGYILKTSF 386
Query: 196 ENNIILDNAV 205
E+ LD AV
Sbjct: 387 ES---LDAAV 393
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L + L Q Q + ++ +M + + ++ L + + + + G ++H+ +K
Sbjct: 428 SLARGLNQMGLQQRTLEMFVRMFHEDVDIDGFSIASFLSSAASLASIETGKQLHSCSVKL 487
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G DI + NSL+ Y K + A +F S+ P VV+W ++S L ++ EA+ F
Sbjct: 488 GLSSDISVSNSLIDMYSKCKCMGDARSVFQSISEPKVVSWNALMSALVSNEYYNEALSAF 547
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ KP+ T +L AC+ G +G
Sbjct: 548 EDMTLVGAKPDGITFSLMLFACNRSGLVDIG 578
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 123
N +T + LK S + A +IH +++K D + NSL+ YV + A +
Sbjct: 354 NSFTVSTLLKGSSSSLAFLHARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMDDAWAV 413
Query: 124 FNSVVF-PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
++ F D T+T++ GL++ G + ++MF + DV + ++ S LS+ +SL S
Sbjct: 414 ATTMAFIRDRFTYTSLARGLNQMGLQQRTLEMFVRMFHEDVDIDGFSIASFLSSAASLAS 473
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK +H+ S++ ++I + N+++D
Sbjct: 474 IETGKQLHSCSVKLGLSSDISVSNSLID 501
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 37/228 (16%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLY-NKMLNCPSSYNHYTFTQAL 73
+N + ++I P+I NT+++ ++SS PQN+I LY + +L P T+
Sbjct: 70 DINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVF 129
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA + +G ++H +IK G +D FI+N++L YV A ++F+ + D+V
Sbjct: 130 KAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIV 189
Query: 134 TWTTIISGLSKCGFHKE-------------------------------AIDMFCGIDV-- 160
W T+I G++KCG E A+++F + V
Sbjct: 190 AWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVER 249
Query: 161 -KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+P+ T+VS+L+AC+ LG+ + G+ IH + ++ E N I+ A++D
Sbjct: 250 IEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIID 297
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ L+ KM + +T L AC+ A ++G IH +++K + + +++
Sbjct: 237 DALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAII 296
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y I A Q+F S + W ++I GL+ G EA+ +F + D++P+
Sbjct: 297 DMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDV 356
Query: 166 TLVSVLSACSSLG 178
+ ++VL+AC G
Sbjct: 357 SFIAVLTACDHTG 369
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH+ +IK G D + +L F + DI A+ +F + P++ W TII G S+
Sbjct: 40 KIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIRGFSRS 99
Query: 146 GFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ + IDM V+P T SV A + L G +H ++ EN+ +
Sbjct: 100 SVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFI 159
Query: 202 DNAVLDFM 209
N +L FM
Sbjct: 160 RNTIL-FM 166
>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
Length = 622
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 29 PQPHILNTLLKL----LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
P+ NTL++ P A+ LY ML + YTF LKAC+ + Q+
Sbjct: 106 PEAFDYNTLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDSYTFPFVLKACAQLASLQQ 165
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT--WTTIISGL 142
G ++ AH+ K G HD +QNSL+ FY + A F+ V + T W+ +++
Sbjct: 166 GRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEERTTASWSALLAAY 225
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+K G E ++ F + +P+ +++VS +SAC+ LG+ +G++IH LRN N
Sbjct: 226 TKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALLRNTARLNT 285
Query: 200 ILDNAVLDF 208
I+ +++D
Sbjct: 286 IMQTSLVDM 294
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIP---QPHILNTLLKLLTQSSTPQNAIPLYNKMLN--- 59
LK+ S +Q Q+ A I K+ H+ N+L+ + P A ++++ +
Sbjct: 154 LKACAQLASLQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEER 213
Query: 60 --------------------CPSSY----------NHYTFTQALKACSLAHAHQKGLEIH 89
C S+ + + A+ AC+ A G IH
Sbjct: 214 TTASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIH 273
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
+++ + +Q SL+ Y I A +F+++ + ++ ++SGL+ G +
Sbjct: 274 CALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAYSAMLSGLALHGDGR 333
Query: 150 EAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
+A+ +F + + P+A V VL+ACS G
Sbjct: 334 KALQVFDAMVREGHAPDAAAYVGVLNACSRAG 365
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ P+NAI ++++M N++TF LKAC+ A ++G ++HA + K
Sbjct: 88 NFLIRGYASGDAPKNAIRVFHRMRKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFK 147
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D+++ N+L+H Y + K I+ A ++F+ + +V+W ++I+ + + +AI
Sbjct: 148 FGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSIVSWNSVITACVQNLWLGDAIWN 207
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +PN T+V +LS C+ +G+ LG+ IH+ + N L A++D
Sbjct: 208 FVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTLNCQLGTALVD 263
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ +AI + KM + N T L C+ G IH+ VI+
Sbjct: 189 NSVITACVQNLWLGDAIWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIE 248
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + +L+ Y D+ A +F+ + +V TW+ +I GL++ GF KE +++
Sbjct: 249 RGMTLNCQLGTALVDMYAKSGDLGYAKLVFDRMEKKNVWTWSAMILGLAQHGFGKEGLEL 308
Query: 155 FC----GIDVKPNANTLVSVLSACS-----SLGSRKLGKAIHAHSLR 192
F + + PN T + VL ACS G R + H H +R
Sbjct: 309 FLKMKESVSICPNYVTFLGVLCACSHAGLVDEGFRYFYEMEHRHGIR 355
>gi|115456767|ref|NP_001051984.1| Os03g0861900 [Oryza sativa Japonica Group]
gi|113550455|dbj|BAF13898.1| Os03g0861900 [Oryza sativa Japonica Group]
Length = 651
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ LY ML + +TF Q L AC+ H +G ++HA ++++G ++ ++ +L
Sbjct: 145 RQALALYPCMLQAGAPPTQHTFAQLLSACASGRLHHQGTQLHAQLLRWGAGLNLVLKTAL 204
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
LH Y ++ AH + +S DVV WT II+G ++ G + A+ MF + V PNA
Sbjct: 205 LHMYCNCGNMGYAHTVLHSTPQTDVVLWTAIITGYARSGDLQSALQMFRSMTRAAVLPNA 264
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T +++SACSS + + G+ IHA + E++ + NA++D
Sbjct: 265 FTYAALISACSSFRALQPGRQIHARLFKFGLEHDTSVCNALVDL 308
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H + PQ ++ ++ +S Q+A+ ++ M N +T+ + ACS
Sbjct: 218 HTVLHSTPQTDVVLWTAIITGYARSGDLQSALQMFRSMTRAAVLPNAFTYAALISACSSF 277
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV-TVKDIFSAHQIFNSVVFPDVVTWTTI 138
A Q G +IHA + K+G HD + N+L+ Y + + F++V P+VV+WT +
Sbjct: 278 RALQPGRQIHARLFKFGLEHDTSVCNALVDLYSKSSSRLLDLLHTFHAVDKPNVVSWTAL 337
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+GL+ G +EA F + V PN+ T+ ++L SS + + IH + L+
Sbjct: 338 IAGLACHGRDEEAFLAFSQMRLSGVLPNSFTVSTLLKGSSSSLAFLHARKIHGYILKTSF 397
Query: 196 ENNIILDNAV 205
E+ LD AV
Sbjct: 398 ES---LDAAV 404
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L + L Q Q + ++ +M + + ++ L + + + + G ++H+ +K
Sbjct: 439 SLARGLNQMGLQQRTLEMFVRMFHEDVDIDGFSIASFLSSAASLASIETGKQLHSCSVKL 498
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G DI + NSL+ Y K + A +F S+ P VV+W ++S L ++ EA+ F
Sbjct: 499 GLSSDISVSNSLIDMYSKCKCMGDARSVFQSISEPKVVSWNALMSALVSNEYYNEALSAF 558
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ KP+ T +L AC+ G +G
Sbjct: 559 EDMTLVGAKPDGITFSLMLFACNRSGLVDIG 589
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 123
N +T + LK S + A +IH +++K D + NSL+ YV + A +
Sbjct: 365 NSFTVSTLLKGSSSSLAFLHARKIHGYILKTSFESLDAAVGNSLVDVYVRFARMDDAWAV 424
Query: 124 FNSVVF-PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
++ F D T+T++ GL++ G + ++MF + DV + ++ S LS+ +SL S
Sbjct: 425 ATTMAFIRDRFTYTSLARGLNQMGLQQRTLEMFVRMFHEDVDIDGFSIASFLSSAASLAS 484
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK +H+ S++ ++I + N+++D
Sbjct: 485 IETGKQLHSCSVKLGLSSDISVSNSLID 512
>gi|22328675|ref|NP_193307.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161477|sp|Q8VYH0.1|PP313_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g15720
gi|18175616|gb|AAL59897.1| unknown protein [Arabidopsis thaliana]
gi|20465541|gb|AAM20253.1| unknown protein [Arabidopsis thaliana]
gi|332658240|gb|AEE83640.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 616
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 10/206 (4%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTF 69
+ K++N ++ +P++++ +++ PQNA+ ++ KM + P N YTF
Sbjct: 75 VKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTF 134
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV- 128
KACS + G IHA + G +I + +SL+ Y D+ +A ++F+S++
Sbjct: 135 ASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIG 194
Query: 129 -FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSACSSLGSRKL 182
+VV+WT++I+ ++ EAI++F + + N L SV+SACSSLG +
Sbjct: 195 YGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQW 254
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
GK H R E+N ++ ++LD
Sbjct: 255 GKVAHGLVTRGGYESNTVVATSLLDM 280
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +K G D F N L+ YV +K+I +A ++F+ + P+VV+WT++ISG + G
Sbjct: 51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110
Query: 148 HKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ A+ MF + V PN T SV ACS+L ++GK IHA + NI++ +
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSS 170
Query: 204 AVLDF 208
+++D
Sbjct: 171 SLVDM 175
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLY---NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+++ Q++ AI L+ N L + N + + ACS Q G H V
Sbjct: 204 SMITAYAQNARGHEAIELFRSFNAALTSDRA-NQFMLASVISACSSLGRLQWGKVAHGLV 262
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G+ + + SLL Y + A +IF + V+++T++I +K G + A+
Sbjct: 263 TRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAV 322
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + + PN TL+ VL ACS G
Sbjct: 323 KLFDEMVAGRINPNYVTLLGVLHACSHSG 351
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 6/200 (3%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTFT 70
SF L+ +IPQP++ NTL++ SS P + ++ +L+ C N +TF
Sbjct: 71 SFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFP 130
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+KA S A + G +H IK D++I NSL+ FY D+ A ++F +
Sbjct: 131 FVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCK 190
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
DVV+W ++IS ++ ++A+++F ++ V PN+ T+V VLSAC+ + G+ +
Sbjct: 191 DVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVC 250
Query: 188 AHSLRNLNENNIILDNAVLD 207
++ R + ++ L NA+LD
Sbjct: 251 SYIERKGIKVDLTLCNAMLD 270
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ Q+ P+ A+ ++N++ L+ + + T L AC+ A G IH ++
Sbjct: 328 NVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIK 387
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G + + + +SL+ Y + A ++F SV DV W+ +I+GL G K AID
Sbjct: 388 REGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAID 447
Query: 154 MFCGID---VKPNANTLVSVLSACSSLG 178
+F + VKPN+ T +VL ACS G
Sbjct: 448 LFFEMQEAKVKPNSVTFTNVLCACSHAG 475
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 35/193 (18%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q + P++A+ L+ KM N T L AC+ + G + +++ +
Sbjct: 196 NSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIER 255
Query: 95 YGHLHDIFIQNSLLHFYVTV---------------KDIFS----------------AHQI 123
G D+ + N++L Y +D+FS A +
Sbjct: 256 KGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLV 315
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGS 179
FN++ ++ W +IS + G KEA+ +F + + KP+ TLVS LSAC+ LG+
Sbjct: 316 FNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGA 375
Query: 180 RKLGKAIHAHSLR 192
LG IH + R
Sbjct: 376 IDLGGWIHVYIKR 388
Score = 42.7 bits (99), Expect = 0.083, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
L S + QN L N +L + ++ + CS + ++ E+HA +++ G
Sbjct: 4 LSVPSISLQNFSTLNNNLL-----FRNHQILSTIDKCS---SSKQLKEVHARMLRTGLFF 55
Query: 100 DIFIQNSLLHFYVTVKDIFS----AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D F + L F + FS A +F+ + P++ TW T+I + ++ +F
Sbjct: 56 DPFSASKL--FTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIF 113
Query: 156 CGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ K PN T V+ A S L + ++G A+H +++
Sbjct: 114 LDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIK 154
>gi|2244928|emb|CAB10350.1| hypothetical protein [Arabidopsis thaliana]
gi|7268320|emb|CAB78614.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 10/206 (4%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTF 69
+ K++N ++ +P++++ +++ PQNA+ ++ KM + P N YTF
Sbjct: 75 VKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTF 134
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV- 128
KACS + G IHA + G +I + +SL+ Y D+ +A ++F+S++
Sbjct: 135 ASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIG 194
Query: 129 -FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSACSSLGSRKL 182
+VV+WT++I+ ++ EAI++F + + N L SV+SACSSLG +
Sbjct: 195 YGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQW 254
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
GK H R E+N ++ ++LD
Sbjct: 255 GKVAHGLVTRGGYESNTVVATSLLDM 280
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +K G D F N L+ YV +K+I +A ++F+ + P+VV+WT++ISG + G
Sbjct: 51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110
Query: 148 HKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ A+ MF + V PN T SV ACS+L ++GK IHA + NI++ +
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSS 170
Query: 204 AVLDF 208
+++D
Sbjct: 171 SLVDM 175
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLY---NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+++ Q++ AI L+ N L + N + + ACS Q G H V
Sbjct: 204 SMITAYAQNARGHEAIELFRSFNAALTSDRA-NQFMLASVISACSSLGRLQWGKVAHGLV 262
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G+ + + SLL Y + A +IF + V+++T++I +K G + A+
Sbjct: 263 TRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAV 322
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + + PN TL+ VL ACS G
Sbjct: 323 KLFDEMVAGRINPNYVTLLGVLHACSHSG 351
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 28 IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P + NT+++ SS P+ A+ L+ ML N +T +KAC++A A +
Sbjct: 72 IPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHA 131
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L +H ++ G + +F+ N+LLH Y + + + + F+ +V +VV+W ++I G ++
Sbjct: 132 LAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQA 191
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G +E +F + + + TLVS+L ACS G+ ++G+ +H L + + ++IL+
Sbjct: 192 GDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILE 251
Query: 203 NAVLD 207
+A++D
Sbjct: 252 SALVD 256
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + L+ +M + +T L ACS + G +H ++
Sbjct: 182 NSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLV 241
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK--------CG 146
G D+ ++++L+ Y D++ A + F + VV+WT+++ +K C
Sbjct: 242 SGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCW 301
Query: 147 FH-----------------------KEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
F EA+D++ + + P+ TLV+VLSA +G
Sbjct: 302 FDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDL 361
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+GK +H + N+ ++ L N++LD
Sbjct: 362 TVGKMVHLYIRDNIYNPDVSLVNSLLD 388
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I+ N ++ Q A+ LYN+M + + + T L A G
Sbjct: 305 MPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVG 364
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H ++ + D+ + NSLL Y + +A +F+ + +VV+W II GL+
Sbjct: 365 KMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMH 424
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G + I F + P+ T V++LSACS G + G+
Sbjct: 425 GRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQ 466
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 61 PSSYNHY--TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD-- 116
P+ H+ + + L+ C + Q+ ++HAH++ +G L + LL Y +
Sbjct: 4 PARAGHHLPSLQKLLRQC---RSIQRLNQLHAHLLVHGSLSAA--SDLLLASYCALAKAG 58
Query: 117 ---IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 170
+ A ++F+ + PD V + TII +EA+ + G+ + PN TL V
Sbjct: 59 HGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFV 118
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ AC+ +R+ A+H +LR + + NA+L
Sbjct: 119 VKACTIAQAREHALAVHGVALRLGLVGQVFVGNALL 154
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 4/183 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLE 87
P N ++ S P+ A+ LY ++L C + ++YT+ KAC+ + G E
Sbjct: 69 PNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSE 128
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
I HV+ G DIF+ N+++H V+ D+ A ++F+ D+V+W ++I+G + G+
Sbjct: 129 ILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 188
Query: 148 HKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
EA++ + + V KP+ T++ V+S+C+ L LG+ H + N + + L NA
Sbjct: 189 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 248
Query: 205 VLD 207
++D
Sbjct: 249 LMD 251
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+N+M + + T L ACS A G+ IH ++ K
Sbjct: 309 NAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK 368
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ ++ + +L+ Y I A Q+F + + +TWT IISGL+ G AI
Sbjct: 369 HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAY 428
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + V P+ T + +LSAC G + G+
Sbjct: 429 FSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 461
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + A+ Y +M + T + +C+ G E H ++ +
Sbjct: 177 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEE 236
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF------- 147
G + + N+L+ Y+ ++ SA ++F+S+ +V+WTT++ G ++ G
Sbjct: 237 NGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKL 296
Query: 148 ------------------------HKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSR 180
KEA+ +F +++ P+ T+VS LSACS LG+
Sbjct: 297 FDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGAL 356
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+G IH + ++ N+ L A++D
Sbjct: 357 DVGIWIHHYIEKHELSLNVALGTALID 383
Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+I + ++ G + D F + L+ F +D+ I + P+ +W I G
Sbjct: 24 QIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLD 83
Query: 145 CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+EA+ ++ + KP+ T + AC+ L ++G I H L +++I
Sbjct: 84 SENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIF 143
Query: 201 LDNAVLDFM 209
+ NAV+ +
Sbjct: 144 VSNAVIHLL 152
>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 105/187 (56%), Gaps = 8/187 (4%)
Query: 28 IPQPHILNTLLKLL--TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P ++ N +K++ +S +A+ + N + + S + + L+ C+ + G
Sbjct: 11 LPSFNLKNKEIKIIGFCKSGALLHALDILNSIDSREISNKPFIYASLLQTCTKVVSFNHG 70
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
L+IHAHV+K G D F+ NSLL Y + D F ++F+ + F DV++WT++I+G K
Sbjct: 71 LQIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFDGLYFRDVISWTSMITGYVK 130
Query: 145 CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNENNII 200
K+A+D+F + V PNA TL +V+ AC+ LG+ LGK H +R + N++I
Sbjct: 131 GEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHSNHVI 190
Query: 201 LDNAVLD 207
+A++D
Sbjct: 191 -GSALID 196
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL Q+ ++ I ++ +M + + Y+F L+AC+ A ++G E+H ++
Sbjct: 325 SALLGGFCQNGDFESVIRIFREM---GEADDLYSFGTVLRACAGLAAVRQGKEVHCQYVR 381
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ I+++L+ Y I AH+IF + +++TW ++I G ++ G+ +EA+ +
Sbjct: 382 RGGWRDVIIESALVDLYAKCGCIDFAHRIFTKMTVRNLITWNSMICGFAQNGWAEEALRI 441
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + KP+ T + VL ACS L K I + +R
Sbjct: 442 FDEMVKEGTKPDYITFIGVLFACSHTDREPLAKGILCYDVR 482
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 88/169 (52%), Gaps = 4/169 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+ P+ A+ L+ +ML+ N +T + +KAC+ G H ++ G +
Sbjct: 130 KGEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHSNHV 189
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
I ++L+ Y ++ A ++F+ ++ PD + WT++IS ++ + +A+ F + K
Sbjct: 190 IGSALIDLYGRNYELDDARRLFDELLEPDAICWTSVISAYTRNDMYDKALGFFYLMQRKL 249
Query: 162 ---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ T +VL+AC +L K GK +HA + + N++++++++D
Sbjct: 250 GLAPDGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSGNVVVESSLVD 298
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 75/143 (52%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TF L AC ++G E+HA +I G ++ +++SL+ Y + + ++F
Sbjct: 254 DGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQRVF 313
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ + + V+W+ ++ G + G + I +F + + + +VL AC+ L + + GK
Sbjct: 314 DRMSVKNSVSWSALLGGFCQNGDFESVIRIFREMGEADDLYSFGTVLRACAGLAAVRQGK 373
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H +R ++I+++A++D
Sbjct: 374 EVHCQYVRRGGWRDVIIESALVD 396
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 104/189 (55%), Gaps = 7/189 (3%)
Query: 26 IKIPQPHILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
I+ P + N L++ +S+ Q+AI LY++ML S + +TF LKAC+ A
Sbjct: 86 IENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALS 145
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G +IHA ++K G B++I NSL+HFY T + A +F+ + +V+W +I
Sbjct: 146 EGEQIHAQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 144 KCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE---NN 198
+ G A+++F + +P+ T+ S+ +AC+ +GS LG H L+ + N+
Sbjct: 206 RFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVND 265
Query: 199 IILDNAVLD 207
++L+ +++D
Sbjct: 266 VLLNTSLVD 274
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIK---YGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+ YT AC+ + G+ H ++K ++D+ + SL+ Y + A
Sbjct: 227 DGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLNTSLVDMYCKCGSLELAL 286
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGIDVK---PNANTLVSVLSACSSL 177
Q+F+ + DV +W ++I G S G A++ F C + + PNA T V VLSAC+
Sbjct: 287 QLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHG 346
Query: 178 GSRKLGK 184
G G+
Sbjct: 347 GLVSEGR 353
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 87 EIHAHVIKYG---HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
++HA I+ H + F+ + +LHF ++ D+ A ++F+ + P+ W +I +
Sbjct: 44 QLHAQTIRTTSSHHPNTFFLYSRILHF-SSLHDLRYAFRVFHQIENPNSFMWNALIRACA 102
Query: 144 KCGFHKE-AIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ K+ AI ++ + V + +T VL AC+ L + G+ IHA L+ ++B
Sbjct: 103 RSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSB 162
Query: 199 IILDNAVLDF 208
+ ++N+++ F
Sbjct: 163 VYINNSLVHF 172
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 104/191 (54%), Gaps = 11/191 (5%)
Query: 29 PQPHILNTLLKLLTQSST---PQNAIPLYNKMLNCPSSY---NHYTFTQALKACSLAHAH 82
P + NTL+++ +S+ A+ LY M+ +++TF LKAC+ +
Sbjct: 88 PNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSL 147
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+G ++HAHV+K+G D +I NSL+HFY T + A ++F + + V+W +I
Sbjct: 148 CEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSY 207
Query: 143 SKCGFHKEAIDMFCGIDV--KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN--- 197
+K G A+ MF + P+ T+ SV+SAC+ LG+ LG +HA+ L+ ++N
Sbjct: 208 AKGGIFDTALRMFGEMQRVHDPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVD 267
Query: 198 NIILDNAVLDF 208
+++++ ++D
Sbjct: 268 DVLVNTCLVDM 278
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKY---GHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
YT + AC+ A GL +HA+++K + D+ + L+ Y ++ A Q+
Sbjct: 232 YTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQV 291
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
F S+ F D+ W ++I GL+ G K A++ + + + PN+ T V VLSAC+ G
Sbjct: 292 FESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRG 350
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 7/172 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+P + N +++ ++++ Q+A+ +Y+KM S + +TF LKAC Q G
Sbjct: 79 LPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMG 138
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLS 143
+HA V + G D+F+QN L+ Y + + A +F + P+ +V+WT I+S +
Sbjct: 139 RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 144 KCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ G EA+++F +DVKP+ LVSVL+A + L + G++IHA ++
Sbjct: 199 QNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMK 250
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 97/187 (51%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ +P+ I++ ++ Q+ P A+ ++++M + L A + +
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLE 239
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IHA V+K G + + SL Y + +A +F+ + P+++ W +ISG +
Sbjct: 240 QGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
K GF K+AID+F + DV+P+ ++ S +SAC+ +GS + + + + R+ +++
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVF 359
Query: 201 LDNAVLD 207
+ +A++D
Sbjct: 360 ISSALID 366
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K P + N ++ ++ ++AI L+++M+N + + T A+ AC+ + ++
Sbjct: 283 MKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ +V + + D+FI ++L+ + + A +F+ + DVV W+ +I G
Sbjct: 343 RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G +EAI ++ ++ V PN T + +L AC+ G + G
Sbjct: 403 GQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREG 443
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA ++ G F+ L+H + DI A Q+F+ + P V W II G S+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++A+ M+ + V P++ T +L AC L ++G+ +HA R E ++ + N
Sbjct: 99 HFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQN 158
Query: 204 AVL 206
++
Sbjct: 159 GLI 161
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
Y + L ACS+ + G +IHAH+++YG D + N L+ YV + +AH++FN
Sbjct: 250 YILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNG 309
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+ ++++WTT++SG + HKEA+++F + +KP+ S+L++C+SL + G
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFG 369
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+HA++++ N+ + N+++D
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLID 393
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGL--EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
S N Y + ++ACS + + ++ + ++K G D+++ L+ FY+ +I A
Sbjct: 143 SPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177
+F+++ VTWTT+ISG K G ++ +F + +V P+ L +VLSACS L
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSIL 262
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK IHAH LR E + L N ++D
Sbjct: 263 PFLEGGKQIHAHILRYGLEMDASLMNVLID 292
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P +I++ TLL Q++ + A+ L+ M + Y + L +C+ HA G
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFG 369
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA+ IK +D ++ NSL+ Y + A ++F+ DVV + +I G S+
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRL 429
Query: 146 GFH---KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
G EA+++F + ++P+ T VS+L A +SL S L K IH + +I
Sbjct: 430 GTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDI 489
Query: 200 ILDNAVLD 207
+A++D
Sbjct: 490 FAGSALID 497
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K+ I N++ Q S + A+ L+ ++ + +TF + A + Q G
Sbjct: 515 MKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E H ++K G + +I N+LL Y AH+ F+S DVV W ++IS +
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANH 634
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G K+A+ M + ++PN T V VLSACS G
Sbjct: 635 GEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAG 670
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF L+A + + +IH + KYG DIF ++L+ Y + + +F+ +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM 515
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGK 184
D+V W ++ +G + ++EA+++F + + +P+ T ++++A +L S +LG+
Sbjct: 516 KVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQ 575
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
H L+ E N + NA+LD
Sbjct: 576 EFHCQLLKRGLECNPYITNALLD 598
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 114/208 (54%), Gaps = 12/208 (5%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTP-QNAIPLYNKML--NCPS 62
+L P +I AQI P P I NT+++ + + P + LY M+ P
Sbjct: 173 ALSPLGDLNYARKIFAQI---PNPGIFPYNTIIRGCSYAKNPSREPYFLYKSMVTRGFPR 229
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ N +T LKAC+ A ++G +IHA +++ G + ++Q+SL+ Y ++I A Q
Sbjct: 230 A-NTFTMAFVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQ 288
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGS 179
+F+ + ++V W+ +ISG ++ G EA+ MF + ++P+ +LV V+SAC+ G+
Sbjct: 289 VFDEITERNLVCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAGA 348
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+G+ IHA+ + + ++ L+ A+++
Sbjct: 349 LDIGRWIHAYIKKRMIHIDLELNTALVN 376
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 34/188 (18%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIP---QPHILNTLLKLLTQSS------------TPQN- 49
LK+ ++F++ QIHA+I++ P++ ++L+ L + T +N
Sbjct: 239 LKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNL 298
Query: 50 ------------------AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
A+ ++ +M + + + AC++A A G IHA+
Sbjct: 299 VCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAY 358
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ K D+ + +L++ Y I A +IF+ + D W+++I GL+ G ++A
Sbjct: 359 IKKRMIHIDLELNTALVNMYAKCGCIEKAKEIFDYMPVKDSKAWSSMIVGLAIHGLAEDA 418
Query: 152 IDMFCGID 159
++MF ++
Sbjct: 419 LEMFSRME 426
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + ++AC+ +KG ++H V++ G D+++ SL+ FY BI A +F
Sbjct: 36 NEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVF 95
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ ++ VTWTTII+G +KCG ++++F + +V P+ + SVLSACS L +
Sbjct: 96 DQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 155
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
GK IHA+ LR E ++ + N ++DF
Sbjct: 156 GGKQIHAYVLRRGTEMDVSVVNVLIDF 182
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ T+ ++ L+ +M + Y + L ACS+ + G +IHA+V++
Sbjct: 108 TIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 167
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ + N L+ FY + + ++F+ +V ++++WTT+ISG + F EA+ +F
Sbjct: 168 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 227
Query: 156 CGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ KP+ SVL++C SL + + G+ +HA++++ E+N + N ++D
Sbjct: 228 GEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLID 282
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N + TQ + A+ LY+ + N +TF + A S + + G + H +
Sbjct: 408 VWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQL 467
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G F+ N+L+ Y I A ++FNS ++ DVV W ++IS ++ G +EA+
Sbjct: 468 VKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEAL 527
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
MF + ++PN T V+VLSACS G
Sbjct: 528 GMFREMMKEGIQPNYVTFVAVLSACSHAG 556
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM---LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N +++ + A+ L+++M L PS TF L + A + +IH
Sbjct: 309 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLL---TFVSLLGVSASLFALELSKQIHGL 365
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+IK G D+F ++L+ Y + A +F + D+V W + G ++ ++EA
Sbjct: 366 IIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEA 425
Query: 152 IDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIH 187
+ ++ + KPN T ++++A S+L S + G+ H
Sbjct: 426 LKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFH 464
Score = 37.4 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 146 GFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G+ +EA+ +F + K PN L SV+ AC+ LG + G +H +R+ + ++ +
Sbjct: 15 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74
Query: 202 DNAVLDF 208
+++DF
Sbjct: 75 GTSLIDF 81
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+LN+L++ + + + AI LY +ML + NHYTF L C+ A +G+++H V
Sbjct: 98 MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G D+FIQN L+HFY + H++F + +VV+WT++I G ++ KEA+
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+F + K N LV + C ++ + K + RNL N IL N
Sbjct: 218 SLFFEMLNKVMVNALVDMYMKCGAIDAAK--RLFDECVDRNLVLYNTILSN 266
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS---------LAHAHQ 83
+ NT+L + + A+ + ++ML + T A+ A + + H
Sbjct: 259 LYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCH--- 315
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H ++ K G D+ + +L+ + D SA Q+FN + DV WT I ++
Sbjct: 316 -GYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMA 374
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
G + A +F + VKP+ V VL+ACS G + G +H SL
Sbjct: 375 MEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG--LHIFSL 423
>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
Length = 662
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 22 HAQIIKIPQP---HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
H ++++PQP + NTLL+ T + A+ LY++M +++H TFT A KAC+
Sbjct: 65 HNLLVQMPQPPPVSVSNTLLRSYTGLGFNRQALALYSQM----RAFDHLTFTFAAKACAD 120
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
+ G +H + G D ++QN+L+ Y+ +D+ SA +F ++ V+W T+
Sbjct: 121 LRRRRHGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTV 180
Query: 139 ISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+G K G + A+++F G V + T+VSVL AC+ +G+A+H ++
Sbjct: 181 ITGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGL 240
Query: 196 ENNIILDNAVLD 207
N + NA++D
Sbjct: 241 GNYAAVKNALID 252
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + + A+ ++ M+ + T L AC+ A G +H +
Sbjct: 178 NTVITGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVV 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAI- 152
G + ++N+L+ Y + + A ++F+ + DVV+WT +I +A
Sbjct: 238 RGLGNYAAVKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFA 297
Query: 153 ---DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+M + +PNA T+V +LSAC+SL S K K HA +R ++ +++ A++D
Sbjct: 298 LGSEMLVTSEAQPNAVTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSDTVVETALVD 355
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N + T + A+ L+ +ML + T + A + + + IH ++
Sbjct: 381 NAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQAKNIHCCLLI 440
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L I L++ Y D+ A ++F + DVV WTT+I+G G + AI +
Sbjct: 441 RGCLGSTDIATGLINVYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMHGHAQTAILL 500
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
+ + V PN T+ S++ +CS G
Sbjct: 501 YSRMIEMGVTPNTVTMASLMYSCSHAG 527
Score = 39.7 bits (91), Expect = 0.75, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT-TIISGLSKC 145
++HA ++K GHL + LL Y F AH + + P V+ + T++ +
Sbjct: 31 QLHALLLKSGHLLHCDSIHLLLGSYCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSYTGL 90
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
GF+++A+ ++ + + T AC+ L R+ G+A+H +L
Sbjct: 91 GFNRQALALYSQMRAFDHL-TFTFAAKACADLRRRRHGRAVHGRAL 135
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 37/210 (17%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P + N +++ +QS TP + LYN+M+ + N +T++ + C+ + ++G
Sbjct: 92 IENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREG 151
Query: 86 LEIHAHVIKYGHLHDIFIQ----------------------------------NSLLHFY 111
++H V+ G+ ++F++ NSLL Y
Sbjct: 152 EQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGY 211
Query: 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLV 168
V D+ A +IF+ + +VV+WTT+I+G ++ G K+A+ +F + VK + LV
Sbjct: 212 VRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALV 271
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ LSAC+ LG KLG IH++ L+ N
Sbjct: 272 AALSACAELGDLKLGTWIHSYIDERLHAGN 301
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ T++ Q + A+ L+++M + AL AC+ +
Sbjct: 226 EMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKL 285
Query: 85 GLEIHAHVIKYGHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
G IH+++ + H + + + NSL+H Y + I A+++F + ++WT++I+
Sbjct: 286 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 345
Query: 141 GLSKCGFHKEAIDMF-----CGIDV-KPNANTLVSVLSACSSLGSRKLGK 184
G +K G +EA+ +F G D +P+ T + VL ACS G G+
Sbjct: 346 GFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGR 395
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 57 MLNCPSSYNHYTFTQAL----KACSLAHAH------QKGLEIHAHVIKYGHLHDIFIQNS 106
++ C Y+H Q L SL H +K +IH +I G F+
Sbjct: 12 VVKCHDMYDHIGEIQVLLEHMDDGSLEETHITCDTIKKLKQIHTQIIVNGFSQKNFLLVK 71
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPN 163
LL FY+T ++ +AH++F + P W +I G S+ + ++++ + +PN
Sbjct: 72 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 131
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T ++ C+ + G+ +H + N N+ + ++++
Sbjct: 132 EFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNL 176
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ A+ LY++ML N YTF LK C+ +G EIHAHVI+
Sbjct: 167 NVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIR 226
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D+ + N+L+ YV DI +A +F+ + D ++W +ISG + G E +++
Sbjct: 227 FGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLEL 286
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + V P+ T+ +V SAC L + +LG+ +H + +++ +I ++N+++
Sbjct: 287 FSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLI 341
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 2/173 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ L P A+ Y M + T L AC+ G+ +H IK G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ + + NSL+ Y K + +A ++F ++ +VV+WT++I GL EA+ F
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490
Query: 157 GI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +KPN+ TL+SVLSAC+ +G+ GK IHAH+LR + L NA+LD
Sbjct: 491 QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILD 543
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T AC L + G +H +V+K DI + NSL+ Y ++ + A +F+ +
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGK 184
DVV+WT +I+ L +A++ + ++++ P+ TLVSVLSAC+ +G LG
Sbjct: 361 ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H +++ +++I+ N+++D
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLID 443
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 17/212 (8%)
Query: 12 TLSFKQLNQIHAQIIKIPQP--------------HILNTLLKLLTQSSTPQNAIPLYNKM 57
TLSF + Q H ++ Q N L+ L + A+ M
Sbjct: 29 TLSFSKNLQTHKHTLRKTQEISVVGAAVSHSAIDQTQNLELRELCLQGNLEQAMKRLESM 88
Query: 58 LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
L + L+ C A +G ++ V + + N+LL +V ++
Sbjct: 89 LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNL 148
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
A +F + DV +W ++ G +K G EA++++ + +++PN T SVL C
Sbjct: 149 LDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTC 208
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + GK IHAH +R E+++ + NA++
Sbjct: 209 AGVSDIARGKEIHAHVIRFGFESDVDVGNALI 240
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ A +G EIHAH ++ G D F+ N++L YV A F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
NS DV W +++G ++ G K A+++F +++ P+ T +S+L ACS G
Sbjct: 559 NSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSG 614
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ A+ LY++ML N YTF LK C+ +G EIHAHVI+
Sbjct: 167 NVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIR 226
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D+ + N+L+ YV DI +A +F+ + D ++W +ISG + G E +++
Sbjct: 227 FGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLEL 286
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + V P+ T+ +V SAC L + +LG+ +H + +++ +I ++N+++
Sbjct: 287 FSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLI 341
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 2/173 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ L P A+ Y M + T L AC+ G+ +H IK G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ + + NSL+ Y K + +A ++F ++ +VV+WT++I GL EA+ F
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490
Query: 157 GI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +KPN+ TL+SVLSAC+ +G+ GK IHAH+LR + L NA+LD
Sbjct: 491 QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILD 543
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T AC L + G +H +V+K DI + NSL+ Y ++ + A +F+ +
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGK 184
DVV+WT +I+ L +A++ + ++++ P+ TLVSVLSAC+ +G LG
Sbjct: 361 ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H +++ +++I+ N+++D
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLID 443
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 17/212 (8%)
Query: 12 TLSFKQLNQIHAQIIKIPQP--------------HILNTLLKLLTQSSTPQNAIPLYNKM 57
TLSF + Q H ++ Q N L+ L + A+ M
Sbjct: 29 TLSFSKNLQTHKHTLRKTQEISVVGAAVSHSAIDQTQNLELRELCLQGNLEQAMKRLESM 88
Query: 58 LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
L + L+ C A +G ++ V + + N+LL +V ++
Sbjct: 89 LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNL 148
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
A +F + DV +W ++ G +K G EA++++ + +++PN T SVL C
Sbjct: 149 LDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTC 208
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + GK IHAH +R E+++ + NA++
Sbjct: 209 AGVSDIARGKEIHAHVIRFGFESDVDVGNALI 240
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ A +G EIHAH ++ G D F+ N++L YV A F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
NS DV W +++G ++ G K A+++F +++ P+ T +S+L ACS G
Sbjct: 559 NSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSG 614
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 46/222 (20%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQK 84
I+ P I N++++ L+ S +P A+ + +M+ N YTF LK+C+ LA AH+
Sbjct: 89 IEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHE- 147
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYV---------------TVKDIFS---------- 119
G +IHAHV+K G + D+FI SL++ Y +D S
Sbjct: 148 GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYAL 207
Query: 120 ------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 170
A Q+F+ + DVV+W +I+G ++ G KEA+ +F + +V PN +T+VSV
Sbjct: 208 WGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNEN-----NIILDNAVLD 207
LSAC+ + LG +S+R+ E+ N+ L NA++D
Sbjct: 268 LSACAQSNALDLG-----NSMRSWIEDRGLCSNLKLVNALID 304
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q + A+ L+ M N T L AC+ ++A G + + +
Sbjct: 230 NAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIED 289
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + N+L+ Y D+ +A ++F+ ++ DV++W +I G + +KEA+ +
Sbjct: 290 RGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALAL 349
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
F V+P T +S+L +C+ LG+ LGK IHA+ +N N
Sbjct: 350 FREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFN 393
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 61 PSSYNHYTFTQ---ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-- 115
PSS Y Q +LK S + + +IHAH+IK G + +F + L+ F +
Sbjct: 18 PSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSG 77
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 172
DI A +FNS+ P++ W ++I GLS A+ F + V+PN+ T +L
Sbjct: 78 DISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLK 137
Query: 173 ACSSLGSRKLGKAIHAHSLR 192
+C+ L S GK IHAH L+
Sbjct: 138 SCAKLASAHEGKQIHAHVLK 157
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ T + + A+ L+ +ML TF L +C+ A G IHA++ K
Sbjct: 331 NVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINK 390
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + SL+ Y +I +A Q+F+ + + +W +I GL+ G +A ++
Sbjct: 391 NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFEL 450
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F + ++PN T V +LSAC G LG+
Sbjct: 451 FSKMSSDGIEPNEITFVGILSACKHAGLVDLGQ 483
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 99/179 (55%), Gaps = 4/179 (2%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT+++ + + A+ Y +M +++T+ LKAC+ A ++G+++HAH++
Sbjct: 99 FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL 158
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G +D+F+QNSL+ Y +I +F + V +W+ +I+ + G + +
Sbjct: 159 KLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLR 218
Query: 154 MFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + + + LVSVLSAC+ LG+ LG+++H LRN++ N+I++ ++++
Sbjct: 219 LLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEM 277
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC+ A G +H +++ ++ ++ SL+ Y+ ++ +F + +
Sbjct: 240 LSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNK 299
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++++ +ISGL+ G+ +E + +F + ++P+ V VL+ACS G
Sbjct: 300 LSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAG 348
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 61/198 (30%), Positives = 105/198 (53%), Gaps = 8/198 (4%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
SF+ L+Q K P + NT+++ L + Q +I +Y+ M S + +TF L
Sbjct: 61 SFRILDQT-----KEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVL 115
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KAC+ + G+++H+ V+K G D F++ SL++ Y I +A ++F+ + +
Sbjct: 116 KACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFA 175
Query: 134 TWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+WT ISG G +EAIDMF + ++P++ +LV VLSAC G + G+ I +
Sbjct: 176 SWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYI 235
Query: 191 LRNLNENNIILDNAVLDF 208
N N+ + A++DF
Sbjct: 236 TENGMVRNVFVATALVDF 253
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI ++ ++L + ++ + L AC + G I ++ + G + ++F+ +L
Sbjct: 191 REAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATAL 250
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ FY ++ A +F+ ++ ++V+W+++I G + G KEA+D+F + +KP+
Sbjct: 251 VDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDC 310
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+V VL +C+ LG+ +LG A +L N NE LDN+VL
Sbjct: 311 YAMVGVLCSCARLGALELGD--WASNLINGNE---FLDNSVL 347
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++++ + P+ A+ L+ KMLN + Y L +C+ A + G +
Sbjct: 279 SSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLING 338
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L + + +L+ Y + A ++F + D V W ISGL+ G K+A+ +
Sbjct: 339 NEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGL 398
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ +KP+ NT V +L AC+ G + G+
Sbjct: 399 FGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431
>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
Length = 460
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
P LNT+L++ S P+ A+ L+ + L P ++ T+ L+AC+ A ++G +H
Sbjct: 83 DPFPLNTVLRIAAGSPRPRVALELHRRRLALPDTH---TYPPLLQACARLLALREGECLH 139
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS--VVFPDVVTWTTIISGLSKCGF 147
A K G + +F+QNSL+H Y SAH++F+ V ++V+W ++++ + G
Sbjct: 140 AEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGR 199
Query: 148 HKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDN 203
E + +F G+D P+ T+VSVL+AC+ G+ LG+ +H + + L EN+ + N
Sbjct: 200 PNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHV-SN 258
Query: 204 AVLDF 208
A++D
Sbjct: 259 ALIDL 263
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L + P + ++ +ML + + +T L AC+ A G +H +V K
Sbjct: 188 NSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEK 247
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAID 153
G + + + N+L+ Y + A +IF + + VV+WT++I GL+ GF KEA++
Sbjct: 248 VGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 307
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLG 178
+F ++ + P T+V VL ACS G
Sbjct: 308 LFSLMEREKLVPTEITMVGVLYACSHCG 335
>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
Length = 623
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 5/196 (2%)
Query: 18 LNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L+ A I Q ++ + L+ LL Q+ + L M + N TF L A
Sbjct: 53 LDDARAAFRGIHQRNVFSWTILISLLVQNGEASEGLELLKFMDLEGTEANKITFISLLGA 112
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
CS+ G +IH V G DI N+LL+ Y T + A +F +VF DVV+W
Sbjct: 113 CSVTGDLSLGKKIHERVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSW 172
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T IIS + G+ EA+ ++ ++ +P+A TL+SVL AC+SL + GK IH +
Sbjct: 173 TIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVA 232
Query: 193 NLNENNIILDNAVLDF 208
+ E ++ + AV+ F
Sbjct: 233 SGVETDVFVGTAVVSF 248
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P A+ LY +M S + T L+AC+ +G IH ++ G D+F+ +
Sbjct: 185 PLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDVFVGTA 244
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
++ FY + + A Q+F+ ++ D+V W +I ++ ++A ++ + ++PN
Sbjct: 245 VVSFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPN 304
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHS 190
TL+++L +CSS + G ++H +
Sbjct: 305 DVTLITLLDSCSSTCKMERGSSLHREA 331
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q A+ +Y++M + T+ L C+ G E+H+ +
Sbjct: 377 NTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFGDFTTGREVHSRSLA 436
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ +QNSL+ Y ++ +A F SV +VV+W++I++ ++ G A ++
Sbjct: 437 TGCCSDV-VQNSLICLYGGCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNL 495
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ V PN T SVL ACS G
Sbjct: 496 FWTMNQDGVLPNIVTFTSVLHACSHAG 522
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + A LY +M+ N T L +CS ++G +H
Sbjct: 274 NAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAA 333
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAI 152
G+L + N+L++ Y + +A ++F +V+TW T+I ++ + EA+
Sbjct: 334 RGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTNVITWNTMIVANAQEDLNLEAL 393
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
++ ++ +K + T +VL+ C++ G G+ +H+ SL
Sbjct: 394 QIYHRMNQEGIKASDVTYGTVLAVCANFGDFTTGREVHSRSL 435
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 103/189 (54%), Gaps = 8/189 (4%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++ P P LNT+L++ S+ P+ A+ L+ + L P ++ T+ L+AC+ A +
Sbjct: 84 LLPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPPDTH---TYPPLLQACARLLALRY 140
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGL 142
G +HA K G + +F++NSL+H Y SAH++F+ + P+ +V+W ++++G
Sbjct: 141 GEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGF 200
Query: 143 SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+ G E + +F ++ P+ T+VSVL+AC+ +G LG+ +H + N
Sbjct: 201 AANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNA 260
Query: 200 ILDNAVLDF 208
NA++D
Sbjct: 261 HAGNALIDL 269
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 22 HAQIIKIPQPHI----LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
H +IP P N++L + P + ++ +ML + + +T L AC+
Sbjct: 177 HRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACA 236
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWT 136
G +H V K G + + N+L+ Y + A ++F + V VV+WT
Sbjct: 237 EIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWT 296
Query: 137 TIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
++I GL+ GF +A+ +F ++ + P T+V VL ACS G
Sbjct: 297 SLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCG 341
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 109/200 (54%), Gaps = 5/200 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+SF +++ IP P + N +++ +++ LY+KM+ + + F
Sbjct: 763 VSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFP 822
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
ALK+C+ Q+G IH H++ G +D+F+ +L+ Y DI +A +F+ +
Sbjct: 823 FALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR 882
Query: 131 DVVTWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
D+V+WT++ISG + G++ E + D+ V PN +++SVL AC +LG+ + G+ H
Sbjct: 883 DLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFH 942
Query: 188 AHSLRNLNENNIILDNAVLD 207
++ ++ E +I++ A++D
Sbjct: 943 SYVIQTGFEFDILVATAIMD 962
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 6/186 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLE 87
P H+ N+ L+ + + + L++ M+ + +++T ALKAC+ + G
Sbjct: 65 PNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKV 124
Query: 88 IHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
IH K + D+F+ ++L+ Y + A ++F PD V WT++++G +
Sbjct: 125 IHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNN 184
Query: 147 FHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+EA+ +F + V + TLVSV+SAC+ L + K G +H +R + ++ L
Sbjct: 185 DPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLV 244
Query: 203 NAVLDF 208
N++L+
Sbjct: 245 NSLLNL 250
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 95/187 (50%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ +++ T++ + A+ L+++M+ N T AL+AC+++ ++
Sbjct: 266 KMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEE 325
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH + G D + +L+ Y+ A +F + DVV+W ++SG ++
Sbjct: 326 GKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQ 385
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +++ +F + ++P+A +V +L+A S LG + +H + +R+ +N+ +
Sbjct: 386 NGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFV 445
Query: 202 DNAVLDF 208
++++
Sbjct: 446 GASLIEL 452
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/188 (25%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ LL Q+ ++ ++ ML+ + + L A S Q+
Sbjct: 367 RLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQ 426
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
L +H +V++ G ++F+ SL+ Y + A ++F ++ DVV W+++I+
Sbjct: 427 ALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGI 486
Query: 145 CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLG-----KAIHAHSLRNLN 195
G EA+++F + V+PN T +S+LSACS G + G + +H + LR +
Sbjct: 487 HGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDS 546
Query: 196 EN-NIILD 202
E+ I++D
Sbjct: 547 EHFGIMVD 554
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + L AC A +KG H++VI+ G DI + +++ Y + A +F
Sbjct: 918 NRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLF 977
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+ D+V W+ +I+ G ++AID+F V+P+ T VLSACS G +
Sbjct: 978 DETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037
Query: 182 LGK 184
GK
Sbjct: 1038 EGK 1040
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKM--LNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P + +++ Q++ P+ A+ L+++M ++C + T + AC+ + G
Sbjct: 168 PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC-VVLDPVTLVSVVSACAQLLNVKAGS 226
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H VI+ D+ + NSLL+ Y A +F+ + DV++W+T+I+ +
Sbjct: 227 CVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNE 286
Query: 147 FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
EA+++F + K PN+ T+VS L AC+ + + GK IH ++ E + +
Sbjct: 287 AANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVST 346
Query: 204 AVLD 207
A++D
Sbjct: 347 ALID 350
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H+ V K G LHD F L Y + +A ++F+ P+V W + + +
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81
Query: 147 FHKEAIDMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+E + +F C P+ T+ L AC+ L +LGK IH + +N
Sbjct: 82 QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKN 132
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+ HA + YG +D I YV+ I +A +F + P W +I G + G
Sbjct: 738 KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+++++ + +KP+ L +C+ L + GK IH H + N++ +D
Sbjct: 798 RFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDA 857
Query: 204 AVLD 207
A++D
Sbjct: 858 ALVD 861
Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+++M+ +H TFT L ACS H ++
Sbjct: 1002 RKAIDLFDQMVKAGVRPSHVTFTCVLSACS---------------------HSGLLEEGK 1040
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL 167
++F + ++ A ++ N D+ L + G EA+D+ + V+P+A+
Sbjct: 1041 MYFQLMTEEFVIARKLSNYACMVDL---------LGRAGQLSEAVDLIENMPVEPDASIW 1091
Query: 168 VSVLSACSSLGSRKLGKAIHAH 189
S+L AC + L + I H
Sbjct: 1092 GSLLGACRIHNNLDLAEKIADH 1113
>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 6/206 (2%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L L F+++ H ++ +P++++ +L+ PQ+A+ LY KM S N
Sbjct: 48 LNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNG 107
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+T + +CS+ + G +HAHV G ++ + +SL+ Y D+ A +F+S
Sbjct: 108 FTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDS 167
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKL 182
+ +VV+WT +I+G ++ G EA+++F +PN L SV++AC+SLG
Sbjct: 168 MSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACASLGRLVS 227
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
GK H +R E N ++ +A++D
Sbjct: 228 GKVTHGAVIRGGYELNDVVASALVDM 253
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ HA++ K+G L+D N LL+ Y+ + I AH +F+ + P+VV+WT+++SG
Sbjct: 26 ISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNM 85
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
G + A+ ++ + +V PN TL +V+++CS L K GK +HAH
Sbjct: 86 GRPQSALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHAH 132
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
NH+ + AC+ G H VI+ G+ + + ++L+ Y + ++F
Sbjct: 208 NHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSEKVF 267
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ P V+ +T++I G +K G K ++++F + V PN T V +L ACS G
Sbjct: 268 RRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHACSHSG 324
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 46/239 (19%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLL------TQSSTPQNAIPLYNKMLNCPSSYNHY 67
SF N + +IK P+ + N +++ S+ A+ LY +MLN N+
Sbjct: 71 SFNYANNVF-HMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNL 129
Query: 68 TFTQALKACS-LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
TF +K CS L + G IHAHV+K+G L+D+F+ NSL+ ++ +A ++F+
Sbjct: 130 TFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDE 189
Query: 127 VVFPDVV-------------------------------TWTTIISGLSKCGFHKEAIDMF 155
+ DVV TW +II+GL + G KE++++F
Sbjct: 190 MFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIF 249
Query: 156 ------CGIDV-KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G DV KP+ T+ SVLSAC+ LGS GK +HA+ +N E ++++ A+++
Sbjct: 250 HEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVN 308
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY----NHYTFTQALKACSLAHAHQKGLEIHA 90
N+++ L Q+ + ++ ++++M + T L AC+L + G +HA
Sbjct: 230 NSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHA 289
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
++ K D+ I +L++ Y D+ A +IFN + D WT +IS + GF K+
Sbjct: 290 YLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKK 349
Query: 151 AIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
A D F ++ VKPN T V +LSACS G + G+
Sbjct: 350 AFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGR 386
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P P I NT+++ +S P A+ LY M+ ++YT+ L AC+ A + G
Sbjct: 74 PDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRF 133
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H V+K G D+F+ N+L+ FY A +F+ DVVTW +I+ G
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193
Query: 149 KEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI----I 200
++A D+ + +++P+ T+VS++ AC+ LG+ + GK +H++S + L++ I +
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYS-KELDKFEINCDLV 252
Query: 201 LDNAVLD 207
L+ A++D
Sbjct: 253 LETALVD 259
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAH 121
+ T + AC+ ++G +H++ + D+ ++ +L+ Y I A
Sbjct: 212 DEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLAL 271
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
Q+F + +V TW +I GL+ G ++AI +F ++ + P+ T +++L ACS G
Sbjct: 272 QVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAG 331
Query: 179 SRKLGKAI 186
G A+
Sbjct: 332 LVDEGLAM 339
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVTWTTIISG 141
K + HA +++ LH+ + L+ F D+ A ++F + PD T+I G
Sbjct: 26 KTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRG 85
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ EA+ ++ + V + T VL+AC+ LG+ KLG+ H L+N ++
Sbjct: 86 YARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145
Query: 199 IILDNAVLDF 208
+ + NA++ F
Sbjct: 146 LFVINALIQF 155
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ LL Q+ + L M + N TF L ACS+ G IH + G
Sbjct: 493 LISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKG 552
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
DI N+LL+ Y T + + A +F +VF DVV+WT IIS + G+ EA+ ++
Sbjct: 553 LESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYR 612
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ +P+A TL+SVL AC+SL + GKAIH + + E ++ + AV+ F
Sbjct: 613 RMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSF 667
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 7/173 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ T+ + A ++KM N TF L CS + G +H +
Sbjct: 182 TVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGS 241
Query: 96 GHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++NSL+ Y + A ++F + P V++W+ I+ G H EAI
Sbjct: 242 GLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAY---GQHWEAIKT 298
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
F ++ VKPNA TL SVL AC+++G+ + G+ IHA L N + NA
Sbjct: 299 FELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNA 351
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P A+ LY +M S + T L+AC+ A +G IH ++ G D+F+ +
Sbjct: 604 PLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTA 663
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
++ FY + + A Q+F+ ++ D+V W +I ++ ++A ++ + + PN
Sbjct: 664 VVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPN 723
Query: 164 ANTLVSVLSACSSLGSRKLGKAIH 187
TL+++L +CSS + G ++H
Sbjct: 724 DVTLITLLDSCSSTCKMERGSSLH 747
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T T L+AC+ AH++G IHA V+ + + + N+ Y + A ++F
Sbjct: 310 NATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVF 369
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLG--- 178
+S+ D V+W I+S +K G ++AI + + V+ P+ T +++L +CS
Sbjct: 370 SSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLK 429
Query: 179 ----SRKL--GKAIHAHSLRNLNENNIILDNAVL 206
S+ L G+ +H+ + N + + L N ++
Sbjct: 430 QYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLV 463
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + A LY +M+ N T L +CS ++G +H
Sbjct: 693 NAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHREAAA 752
Query: 95 YGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G+L + N+L++ Y ++ +A F SV +VV+W++I++ ++ G A +
Sbjct: 753 RGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARN 812
Query: 154 MFCGID---VKPNANTLVSVLSACSSLG 178
+F ++ V PN T SVL ACS G
Sbjct: 813 LFWTMNQDGVLPNIVTFTSVLHACSHAG 840
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 21/193 (10%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N ++ + Q + AI LY + + TF L AC + +
Sbjct: 70 RMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKF 129
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H H + + D + N L+ Y + A +F PDV TWTT+I+ ++
Sbjct: 130 GRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTR 189
Query: 145 -----CGF------HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
C F H+E + + N T ++VL CSSL + GK +H +L +
Sbjct: 190 HGKLECAFATWSKMHQEGL--------RSNEITFLTVLDTCSSLEVLETGKHVHRLALGS 241
Query: 194 LNENNIILDNAVL 206
+ ++ ++N+++
Sbjct: 242 GLDFSLRMENSLI 254
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T A+ AC+ +G +IHA ++ G + + NSL++ Y + A F+ +
Sbjct: 12 TLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRM 71
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGK 184
D+++W +I+ ++ K+AI ++ + KP+ T S+L+AC + G K G+
Sbjct: 72 PERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGR 131
Query: 185 AIHAHSL 191
+H H L
Sbjct: 132 MLHEHFL 138
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P P LNT+L++ S+ P+ A+ L+ + L P ++ T+ L+AC+ A ++G +
Sbjct: 86 PDPFSLNTVLRIAASSAHPRIALALHRRRLAPPDTH---TYPPLLQACTRLLALREGESL 142
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS--VVFPDVVTWTTIISGLSKCG 146
HA K G + +F++NSL+H Y SAH++F+ V+ ++V+W ++++G + G
Sbjct: 143 HAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANG 202
Query: 147 FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
E + +F D+ P+ T+VSVL+AC+ +G+ LG+ +H + + N + N
Sbjct: 203 RPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGN 262
Query: 204 AVLDF 208
A++D
Sbjct: 263 ALIDL 267
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + P + ++ + L + +T L AC+ A G +H K
Sbjct: 192 NSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASK 251
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAID 153
G + + + N+L+ Y + A ++F + V VV+WT++I GL+ GF K+A++
Sbjct: 252 VGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALE 311
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLG 178
+F ++ + P T+V VL ACS G
Sbjct: 312 LFGLMERERLIPTDITMVGVLYACSHCG 339
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TF LKAC+ + + QKG EIH V K G D+F+ N+LL FY + ++F
Sbjct: 6 DDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVF 65
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSR 180
+ ++ DVV+W ++I S GF+ EAI +FC +++ +PN ++VSVL C+ L
Sbjct: 66 DEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDG 125
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ IH + ++ ++ + + NA++D
Sbjct: 126 VTGRQIHCYVVKTGLDSQVTVGNALVD 152
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L Q+A+ ++ M++ N TF+ L G EIH ++
Sbjct: 179 NAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLR 238
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G DIF+ N+L+ Y A +FN + ++V+W +++ ++ A+D+
Sbjct: 239 FGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDL 298
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ PN+ T +VL AC+ +G + GK IHA ++R + ++ + NA+ D
Sbjct: 299 VRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTD 354
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 12/211 (5%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC 60
M+ +SL+ + F Q+ + I+ N ++ Q+ A+ L +M
Sbjct: 254 MYAKSGRSLQASNVFNQIGE--KNIVS------WNAMVANFAQNRLELAAVDLVRQMQAD 305
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
N TFT L AC+ + G EIHA I+ G D+F+ N+L Y + A
Sbjct: 306 GEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLA 365
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVS---VLSACSSL 177
++F + D V++ +I G S+ E++ +F + +K +VS V+SAC++L
Sbjct: 366 RRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANL 424
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ K GK +H ++R ++ + NA+LDF
Sbjct: 425 AALKQGKEVHGLAVRKHLHTHLFIANALLDF 455
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
N+++ + + AI L+ +M N S + N + L C+ G +IH +V
Sbjct: 77 NSVIGVFSVHGFYAEAIHLFCEM-NLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYV 135
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G + + N+L+ Y + + ++F+ + + V+W II+ L+ +++A+
Sbjct: 136 VKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDAL 195
Query: 153 DMF-CGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+MF ID VKPN+ T S+L L GK IH SLR E++I + NA++D
Sbjct: 196 EMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALID 253
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ +Q++ ++ L+ +M + ++ + AC+ A ++G E+H ++
Sbjct: 380 NILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVR 439
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
HLH +FI N+LL FY+ I A ++F + D +W ++I G G AI+
Sbjct: 440 -KHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAIN 498
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+F + V+ ++ + ++VLSACS G + GK H
Sbjct: 499 LFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEH 537
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 101/183 (55%), Gaps = 7/183 (3%)
Query: 33 ILNTLLKLLTQS-STPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
+ NTL++ S + A LY KML S+ + +TF LKAC+ +G ++H
Sbjct: 97 MWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHC 156
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
++K+G D+++ N L+HFY + + A ++F+ + +V+W ++I L + G +
Sbjct: 157 QIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDS 216
Query: 151 AIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN---NIILDNAV 205
A+ +F + +P+ T+ SVLSAC+ LGS LG H LRN + + ++++ N++
Sbjct: 217 ALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSL 276
Query: 206 LDF 208
++
Sbjct: 277 IEM 279
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N+++ L + +A+ L+ M + YT L AC+ +
Sbjct: 192 EMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKSFEP-DGYTMQSVLSACAGLGSLSL 250
Query: 85 GLEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G H +++ + D+ I+NSL+ Y + A Q+F + D+ +W +I G
Sbjct: 251 GTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILG 310
Query: 142 LSKCGFHKEAIDMF-C----GIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ G +EA++ F C G +VKPN+ T V++L AC+ G G+
Sbjct: 311 FATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGR 358
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q+ A+ L+ M + + YTF L AC A ++G EIH +I+
Sbjct: 240 TMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRS 299
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G+ H++F+ ++L+ Y + + A +F + +VV+WT ++ G + GF +EA+ +F
Sbjct: 300 GYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVF 359
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
C + ++P+ TL SV+S+C++L S + G H +L + + I + NA++
Sbjct: 360 CDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALI 413
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++ M + +T + +C+ + ++G + H + G + I
Sbjct: 348 QNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFIT 407
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-- 160
+ N+L+ Y I ++Q+F+ + F D V+WT ++SG ++ G E ID+F + V
Sbjct: 408 VSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQG 467
Query: 161 -KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
KP+A T ++VLSACS G + G+ L++
Sbjct: 468 LKPDAVTFIAVLSACSRAGLVERGQQYFESMLKD 501
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 35/193 (18%)
Query: 50 AIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ YN M+ + + N TF+ L S G +IH ++K+G +F+ +SL+
Sbjct: 121 AVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLV 180
Query: 109 HFYVTVKDIFSAHQIFNSV--------------------------VF-----PDVVTWTT 137
Y + + A Q+F+ V +F D ++WTT
Sbjct: 181 DMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTT 240
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+I+GL + G EA+D+F + + + T SVL+AC L + K GK IH +R+
Sbjct: 241 MITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSG 300
Query: 195 NENNIILDNAVLD 207
+N+ + +A++D
Sbjct: 301 YNHNVFVGSALVD 313
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
K C + ++H +IK + F+ N+L++ Y + +I A +F+ + P+
Sbjct: 13 KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72
Query: 134 TWTTIISGLSKCG 146
+W T++S SK G
Sbjct: 73 SWNTMLSAYSKSG 85
Score = 37.4 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
LYN ++N S + T+ + HV + F N++L Y
Sbjct: 42 LYNNLINAYSKLGNITYAR-------------------HVFDKMPQPNSFSWNTMLSAYS 82
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNAN--TLV 168
D+ + +IF+ + D V+W ++ISG G EA+ + + D N N T
Sbjct: 83 KSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFS 142
Query: 169 SVLSACSSLGSRKLGKAIHAHSLR 192
++L SS G LG+ IH ++
Sbjct: 143 TMLLLVSSQGCVDLGRQIHGQIVK 166
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 40/225 (17%)
Query: 22 HAQIIKIPQPH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
HA + + PH I NT++++ + + A+ LY ML N+YTF+ L+AC+
Sbjct: 62 HAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACT 121
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
GL HA VIK G F+ N L+H Y + +A ++F+ DV+TWT
Sbjct: 122 --DNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTA 179
Query: 138 IISGLSKCG-------------------------------FHKEAIDMFCGIDV---KPN 163
+I+G K G +EA+++F + + +PN
Sbjct: 180 LINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPN 239
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+V L+ACS LGS G+ IHA+ RN E + +L A++D
Sbjct: 240 HAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDM 284
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+N + NH AL ACS + G IHA+V + G D + +L
Sbjct: 222 REALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTAL 281
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y I A +F + D +T++ISGL+ G +AI +F + V PN
Sbjct: 282 VDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNE 341
Query: 165 NTLVSVLSACSSLG 178
T + VLSACS +G
Sbjct: 342 VTFICVLSACSRMG 355
>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 104/188 (55%), Gaps = 6/188 (3%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+PQ + N ++ ++ + LY++M+N + TFT A+KA S +
Sbjct: 65 KLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEA 124
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G I + +G+ D+F+ +S+L+ YV I A +F+ +V DVV W T+I+GL +
Sbjct: 125 GERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQ 184
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNII 200
G EA+DMF + ++ + ++ ++ AC++LG KLG ++H H++ R + +++I
Sbjct: 185 NGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVI 244
Query: 201 LDNAVLDF 208
L +++D
Sbjct: 245 LQTSLVDM 252
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 5/177 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q+ A+ ++ +M + ++AC+ + GL +H H ++
Sbjct: 177 TMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRR 236
Query: 96 GHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L D+ +Q SL+ Y + D+ A ++F + + V+W +ISG ++ GF + A+D+
Sbjct: 237 EMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDL 296
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ KP+ LVS L ACS +G KLGK+IH + +R L ++L A++D
Sbjct: 297 LVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLG-FELVLGTALIDM 352
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
L+ Q+ + A+ L +M + + AL ACS + G IH ++++
Sbjct: 278 GALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVR 337
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + +L+ Y + AH IF+ V DV+ W T+I+ G KE + +
Sbjct: 338 RLGF-ELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSL 396
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + ++ P+ T S+LSA S G +G+
Sbjct: 397 FLKMKEANISPDHATFASLLSALSHSGQVDVGQ 429
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 115/217 (52%), Gaps = 36/217 (16%)
Query: 28 IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+P+ I N + + SS P +A+ LY M++ N +TF LK+C+ + ++G
Sbjct: 35 IPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEG 94
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYV---TVKD-------------------------- 116
+IH HV+K G D+++ SL+ Y ++D
Sbjct: 95 QQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASR 154
Query: 117 --IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVL 171
I SA ++F+ + DVV+W +ISG ++ G +K+A+++F + +VKP+ +T+ +V+
Sbjct: 155 GYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVV 214
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SAC+ GS +LG+ +H+ + +N+ + NA++D
Sbjct: 215 SACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDL 251
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T + AC+ + + + G ++H+ +
Sbjct: 176 NAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWIND 235
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y ++ +A ++ + DV++W T+I G + +KEA+ +
Sbjct: 236 HGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLL 295
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
F + PN T++S+L AC+ LG+ +G+ IH + + L +++ NA
Sbjct: 296 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKL--KGVVVTNA 346
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML + N T L AC+ A G IH ++ K
Sbjct: 277 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 336
Query: 95 YGHLHDIFIQN------SLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGF 147
L + + N SL+ Y DI +A Q+ +S F + TW +I G + G
Sbjct: 337 --KLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGR 394
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
A D+F + ++P+ T V +LSACS G LG+ I ++ N
Sbjct: 395 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYN 445
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 105/183 (57%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I N++ + ++ + P L+ ++L ++YTF LKAC++A A ++G ++
Sbjct: 92 PDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQL 151
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K G ++++ +L++ Y +D+ SA +F+ +V P VV + +I+G ++
Sbjct: 152 HCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRP 211
Query: 149 KEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+ +F G +KPN TL+SVLS+C+ LGS LGK IH ++ ++ + ++ A+
Sbjct: 212 NEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTAL 271
Query: 206 LDF 208
+D
Sbjct: 272 IDM 274
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I +P ++ N ++ + + P A+ L+ +M N T L +C+L +
Sbjct: 189 RIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDL 248
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + K+ + + +L+ + + A IF + + D W+ +I +
Sbjct: 249 GKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYAN 308
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G ++++ MF + +V+P+ T + +L+ACS G + G+
Sbjct: 309 HGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
K+P +++ ++++ + +Q + A+ ++ + + N + ++AC+ +
Sbjct: 87 KMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVE 146
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG ++H V++ G D+++ SL+ FY +I A +F+ + VTWTTII+G +
Sbjct: 147 KGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYT 206
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
KCG ++++F + +V P+ + SVLSACS L + GK IHA+ LR E ++
Sbjct: 207 KCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS 266
Query: 201 LDNAVLDF 208
+ N ++DF
Sbjct: 267 VVNVLIDF 274
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ T+ ++ L+ +M + Y + L ACS+ + G +IHA+V++
Sbjct: 200 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 259
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ + N L+ FY + + ++F+ +V ++++WTT+ISG + F EA+ +F
Sbjct: 260 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 319
Query: 156 CGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ KP+ SVL++C S + + G+ +HA++++ E++ + N ++D
Sbjct: 320 GEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLID 374
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N + TQ + A+ LY+ + N +TF + A S + + G + H +
Sbjct: 500 VWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQL 559
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G F+ N+L+ Y I A ++FNS ++ DVV W ++IS ++ G +EA+
Sbjct: 560 VKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEAL 619
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
MF + ++PN T V+VLSACS G
Sbjct: 620 GMFREMMKEGIQPNYVTFVAVLSACSHAG 648
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH +I G D F+ N L++ + +A +F+ + +++TW++++S S+ G+
Sbjct: 49 IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108
Query: 148 HKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+EA+ +F + K PN L SV+ AC+ LG + G +H +R+ + ++ +
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 168
Query: 204 AVLDF 208
+++DF
Sbjct: 169 SLIDF 173
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM---LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N +++ + A+ L+++M L PS TF L + A + +IH
Sbjct: 401 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLL---TFVSLLGVSASLFALELSKQIHGL 457
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+IK+G D+F ++L+ Y + A +F + D+V W + G ++ ++EA
Sbjct: 458 IIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEA 517
Query: 152 IDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIH 187
+ ++ + KPN T ++++A S+L S + G+ H
Sbjct: 518 LKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFH 556
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 99/185 (53%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ + NT+++ ++ A Y +ML + +++TF+ LK + G
Sbjct: 115 IENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLG 174
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H +++K G ++++N+L+H Y +KD+ A +F+ + D+V W +I C
Sbjct: 175 KQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSC 234
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G + EA+D+F + V+P+ TLV +SACS+LG+ G+ +H+H N I +
Sbjct: 235 GMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVF 294
Query: 203 NAVLD 207
N+++D
Sbjct: 295 NSLID 299
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +ML + T + ACS A G +H+HV I + NSL+
Sbjct: 240 ALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLID 299
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNAN 165
Y + A ++FN+V ++VTW T+I GL+ G ++A+ +F + + P+
Sbjct: 300 MYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGV 359
Query: 166 TLVSVLSACSSLGSRKLGK 184
T ++VL AC+ G + G+
Sbjct: 360 TFLAVLCACNYGGKVEEGR 378
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+ +YN+M+ + +TF LKAC+ A +KG E+H V+K G D+F+ N+LL
Sbjct: 25 GLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLS 84
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH-KEAIDMF-CGID--VKPNAN 165
FY + A ++F+ + D+V+W T+I S G+H ++A+DMF ID +KPN+
Sbjct: 85 FYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSI 144
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T+ S L L K G+ +H S+R E++I + N+++D
Sbjct: 145 TISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLID 186
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 5/154 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI- 93
N L+ +Q+S ++ L+++M ++ +F AL AC+ A ++G EIH ++
Sbjct: 313 NILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLR 372
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K H+H +F+ NSLL FY I A IF+ + DV +W T+I G G AID
Sbjct: 373 KLFHIH-LFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAID 431
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+F + DV+ ++ + ++VLSACS G + G+
Sbjct: 432 LFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGR 465
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ L +M + N TFT L AC+ + G EIHA I
Sbjct: 213 NAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIH 272
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ N+L Y + A +F++ + D V++ +I G S+ E++ +
Sbjct: 273 MGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL-RDEVSYNILIVGHSQTSDCSESLSL 331
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + +K + + + LSAC++L + K GK IH LR L ++ + N++LDF
Sbjct: 332 FSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDF 388
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ ++ M++ N T + L + G E+H I+ G DIFI NSL
Sbjct: 125 RDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSL 184
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y A +F + +VV+W +I+ ++ F A+ + + PN+
Sbjct: 185 IDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNS 244
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T +VL AC+ +G + GK IHA S+ ++ + NA+ D
Sbjct: 245 VTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTD 287
Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 135 WTTIISGLSKCGFHK--EAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
W T+I G S G E + I V+P+ +T VL AC+ + G+ +H ++
Sbjct: 10 WNTLIRGYSIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVK 69
Query: 193 NLNENNIILDNAVLDF 208
E+++ + N +L F
Sbjct: 70 LGFESDVFVGNTLLSF 85
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 123/270 (45%), Gaps = 67/270 (24%)
Query: 6 LKSLKPTLSFKQLNQIHAQII--KIP-QPHIL---------------------------N 35
L L+ S Q++QIHAQ + +P Q H++ N
Sbjct: 3 LSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWN 62
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L++ T +PQN++ LY KML + +++TF LKACS + +G +IH HV++
Sbjct: 63 SLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRL 122
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+F+ NSL+ Y + SA ++ + F D V+W +IISG + G ++A D+F
Sbjct: 123 GFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLF 182
Query: 156 ----------CGI---------------------------DVKPNANTLVSVLSACSSLG 178
C +V+PNA T+V +LSACS+L
Sbjct: 183 EEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLC 242
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++G+ + N N IL A++D
Sbjct: 243 NYEVGRFLSVFIDVNKIPLNTILVTALIDM 272
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKG--LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
N T L ACS ++ G L + V K L+ I + +L+ Y D+ A +
Sbjct: 227 NAATMVCLLSACSTLCNYEVGRFLSVFIDVNKI-PLNTILV-TALIDMYSKCGDVEKAWR 284
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
IF+ V ++ +W II+G + G +EAID++ + VKPN TLV+VLSAC+ LG+
Sbjct: 285 IFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGA 344
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+LG+ +H + RN + N+IL A++D
Sbjct: 345 LELGREVHLYLGRNGLDLNVILATALVDM 373
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q + AI LY M N T L AC+ A + G E+H ++ +
Sbjct: 298 NAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGR 357
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + +L+ Y I A IF DV W +I GL+ G ++++ +
Sbjct: 358 NGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAV 417
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + V+PN T + VLSAC+ G + G+
Sbjct: 418 FSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGR 450
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NTL++ S + AI +Y M+ +++TF L ACS A +G+++H V+
Sbjct: 90 NTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVV 149
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + D+F+ NSL+HFY + ++F+ ++ +VV+WT++I+G S KEA+
Sbjct: 150 KMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVC 209
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + V+PN T+V +SAC+ L +LGK + ++N ++ NA+LD
Sbjct: 210 LFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLD 266
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ +M+ N T A+ AC+ + G ++ + + G + + N+L
Sbjct: 205 KEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNAL 264
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI---DMFCGIDVKPNA 164
L Y+ D+++ +IF+ ++V + TI+S + G E + D +P+
Sbjct: 265 LDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDK 324
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T++S ++AC+ LG +GK+ HA+ RN E + NA++D
Sbjct: 325 VTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIID 367
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ NT++ Q + + ++ML + T + AC+ G HA+V
Sbjct: 291 MYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYV 350
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG------ 146
+ G I N+++ Y+ +A ++F+S+ VVTW ++I+GL + G
Sbjct: 351 FRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELAL 410
Query: 147 -------------------------FHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
+EAID+ + +K + T+V + SAC LG
Sbjct: 411 RIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLG 470
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ L K I+ + +N ++ L A++D
Sbjct: 471 ALDLAKWIYTYIEKNDIHIDMQLGTALVD 499
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ NT++ + Q+S + AI L +M N + T AC A
Sbjct: 415 EMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDL 474
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
I+ ++ K D+ + +L+ + D +A ++F ++ DV WT I +
Sbjct: 475 AKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAV 534
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
G K AI++F + DVK + V++L+A S G G+ +
Sbjct: 535 EGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQL 579
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP 61
++ L K ++ + N IH + + L+ + ++ P NA+ ++ M
Sbjct: 468 YLGALDLAKWIYTYIEKNDIHIDM------QLGTALVDMFSRCGDPLNAMRVFENM---- 517
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+ +T A++ ++ + +E+ ++K D F+ +LL + +
Sbjct: 518 EKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGR 577
Query: 122 QIFNSV-----VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 174
Q+F ++ V P +V + ++ L + G +EA D+ + +KPN S L+AC
Sbjct: 578 QLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAAC 635
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 4/203 (1%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHY 67
++ T F NQ A + +P N LK QSS + + +L PSS + +
Sbjct: 573 IRVTKLFATNNQPKAHLHTHLKPPKSNQTLKRYLQSSNTSKVLLFFRILLRKNPSSIDSF 632
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ ALKAC+L + +G ++HA VI +G IF+Q SL+ Y ++ AH +F+ +
Sbjct: 633 SLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEI 692
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
++++WT++IS +A+ +F + DV+P+ T+ LSAC+ LG+ +G+
Sbjct: 693 PSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGE 752
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
IHA+ + ++ L+N++++
Sbjct: 753 WIHAYIRHRGLDTDLCLNNSLIN 775
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 22 HAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H +IP ++++ +++ + P A+ L+ +M + T T AL AC+
Sbjct: 686 HNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADL 745
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
A G IHA++ G D+ + NSL++ Y +I +A + S+V P+ VT+ ++
Sbjct: 746 GALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRF--SLVLPNDVTFMGVL 803
Query: 140 SGLSKCGFHKEA-----------------------IDMFC-------------GIDVKPN 163
S G +E +D+ C + V+PN
Sbjct: 804 MACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKMPVRPN 863
Query: 164 ANTLVSVLSACSSLG 178
A ++L ACS G
Sbjct: 864 AVVWRTLLGACSLQG 878
>gi|302757017|ref|XP_002961932.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
gi|300170591|gb|EFJ37192.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
Length = 282
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 84/151 (55%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ LL +++ + A+ +Y M N +TF+ + C+ A A +G ++H H
Sbjct: 132 LWTALLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHT 191
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G+ D+ + +L+ FY D+ +A +F+ + D+V W +I+G ++ G +EA+
Sbjct: 192 VSVGYDKDVIVGTTLVDFYSKCHDVDTARSVFDGIEGKDIVPWNVMITGFARNGHGREAV 251
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLG 183
++ +D+ P++ T+V VL+ACS LG+ + G
Sbjct: 252 RLYQKMDLPPDSLTMVGVLAACSGLGALETG 282
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P +++ N L+ + A+ ++ KM + +TF L ACS + A +G
Sbjct: 24 VPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEG 83
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IHA + G F+ +L+ Y + + A +F+ V D+V WT +++ S+
Sbjct: 84 KAIHALIAASGFDSSCFVATTLIKMYGCCRCMEEAKAVFDRVASKDIVLWTALLTAYSRN 143
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
K A+ ++ +D ++ N T S++S C+ + G+ +H H++ + ++I+
Sbjct: 144 EDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYDKDVIVG 203
Query: 203 NAVLDF 208
++DF
Sbjct: 204 TTLVDF 209
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 104 QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---V 160
NSL++ Y ++ A +F+SV ++V+W +I + G KEA+ + ++ +
Sbjct: 1 SNSLVNMYGKGGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGL 60
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHA 188
KP+ T +SVL ACS+ + GKAIHA
Sbjct: 61 KPDKFTFISVLHACSASEALAEGKAIHA 88
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 8/207 (3%)
Query: 6 LKSLKPT--LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS 63
SL P+ LS+ Q H+ + +P P N L++ S+TP++A+ +Y M N
Sbjct: 705 FSSLSPSKDLSYAQSILDHS-VHPVPLP--WNILIRGYADSNTPKDALFVYRNMRNEGIR 761
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
N TF LKAC+ A ++G ++H VIKYG D+++ N+L++FY + K I A ++
Sbjct: 762 PNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKV 821
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + VV+W +I+ + EAI F + +P+ T+V +L C+ +G+
Sbjct: 822 FDEMPERTVVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNL 881
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
LG+ IH+ + N L A++D
Sbjct: 882 GLGRWIHSQVIERGLVLNYQLGTALVD 908
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+ VI+ G + + + +L+ Y + A +F+ + +V TW+ +I GL++
Sbjct: 884 GRWIHSQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQ 943
Query: 145 CGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLG 178
GF KE +++F + + PN T + VL ACS G
Sbjct: 944 HGFAKEGLELFLDMMRSSLIHPNYVTFLGVLCACSHAG 981
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 73 LKACS-LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVF 129
LK CS + H +Q IH+ + G D F+ L+ F KD+ A I + V
Sbjct: 671 LKLCSSIKHLYQ----IHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVH 726
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
P + W +I G + K+A+ ++ + ++PN+ T +L AC++ + K GK +
Sbjct: 727 PVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQV 786
Query: 187 HAHSLRNLNENNIILDNAVLDF 208
H ++ + ++ ++N +++F
Sbjct: 787 HVEVIKYGLDCDVYVNNNLVNF 808
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 103/187 (55%), Gaps = 5/187 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N ++ +Q+ P A+ L+++M N T + C+ A ++
Sbjct: 180 RMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ 239
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH + I+ G D+ + N L++ Y ++ +AH++F + DV +W II G S
Sbjct: 240 GKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSL 299
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
H EA+ F + V KPN+ T+VSVL AC+ L + + G+ IH +++R+ E+N ++
Sbjct: 300 NSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVV 359
Query: 202 DNAVLDF 208
NA+++
Sbjct: 360 GNALVNM 366
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 110/212 (51%), Gaps = 7/212 (3%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKML 58
+ VNGL ++ +N H ++P + N ++ + +S A+ +N+M
Sbjct: 257 LVVNGLVNMYAKCG--NVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314
Query: 59 NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
N T L AC+ A ++G +IH + I+ G + + N+L++ Y ++
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVN 374
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 175
SA+++F + +VV W IISG S+ G EA+ +F + +KP++ +VSVL AC+
Sbjct: 375 SAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACA 434
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + GK IH +++R+ E+N+++ ++D
Sbjct: 435 HFLALEQGKQIHGYTIRSGFESNVVVGTGLVD 466
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ LY +M + + F +KAC Q G ++H +I G D+ + +L
Sbjct: 104 ALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALAS 163
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANT 166
Y + +A Q+F+ + DVV+W II+G S+ G EA+ +F + V KPN++T
Sbjct: 164 MYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSST 223
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
LVSV+ C+ L + + GK IH +++R+ E+++++ N +++
Sbjct: 224 LVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNM 265
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ N ++ +Q P A+ L+ +M + + L AC+ A ++
Sbjct: 382 RMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQ 441
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH + I+ G ++ + L+ Y ++ +A ++F + DVV+WTT+I
Sbjct: 442 GKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGI 501
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G ++A+ +F + K + ++L+ACS G
Sbjct: 502 HGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAG 538
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I N ++K + + ++AI L+ ++ ++YT+ LK ++G +I
Sbjct: 71 PSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKI 130
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA V+K G D ++ NSL+ Y + + Q+F + D V+W +ISG +C
Sbjct: 131 HAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRF 190
Query: 149 KEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+EA+D++ + + KPN T+VS LSAC+ L + +LGK IH + L+ I+ NA
Sbjct: 191 EEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTP-IMGNA 249
Query: 205 VLDF 208
+LD
Sbjct: 250 LLDM 253
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
QL+Q + P ++ ++ Q + ++AI L+ +M + + L
Sbjct: 290 QLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLT 349
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
C+ A ++G IH ++ + D + +L+ Y I + +IFN + D +
Sbjct: 350 GCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTS 409
Query: 135 WTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
WT+II GL+ G EA+++F CG+ KP+ T V+VLSAC G + G+ + H
Sbjct: 410 WTSIICGLAMNGKTSEALELFEAMQTCGL--KPDDITFVAVLSACGHAGLVEEGRKLF-H 466
Query: 190 SLRNL 194
S+ ++
Sbjct: 467 SMSSI 471
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 40/206 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ + + A+ +Y +M + N T L AC++ + G EIH ++
Sbjct: 178 NIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIA 237
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG------- 146
L I + N+LL Y + A +IF++++ +V WT++++G CG
Sbjct: 238 NELDLTPI-MGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARY 296
Query: 147 -FHK-----------------------EAIDMFCGIDVK---PNANTLVSVLSACSSLGS 179
F + +AI +F + ++ P+ +V++L+ C+ LG+
Sbjct: 297 LFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGA 356
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAV 205
+ GK IH + ++EN I +D V
Sbjct: 357 LEQGKWIHNY----IDENRIKMDAVV 378
>gi|255572345|ref|XP_002527111.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533534|gb|EEF35274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 412
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 3/186 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P N +L+ L QS+ P ++ Y M+ + T T LKAC+ A A +
Sbjct: 59 IVTPSTADWNAILRALIQSTHPIDSFRWYRNMIRGLYKVDALTCTFVLKACARALACSES 118
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H+H ++ G D + +LL Y + ++ SA ++F+ ++ +WT +I G ++
Sbjct: 119 TQLHSHTVRKGFAADALLGTTLLDLYAKIGNLDSAQKVFDEMLVKVTASWTALIFGFAQG 178
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
EA+ +F ++V KP+ TL++ L ACS LG+ K G+ IH + N+ +
Sbjct: 179 NKPSEALGLFKRMEVLGLKPDETTLLAALCACSQLGASKEGEKIHEFIKNQKLDLNVRVC 238
Query: 203 NAVLDF 208
NA++D
Sbjct: 239 NALIDM 244
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
Q + P A+ L+ +M + T AL ACS A ++G +IH + +
Sbjct: 175 FAQGNKPSEALGLFKRMEVLGLKPDETTLLAALCACSQLGASKEGEKIHEFIKNQKLDLN 234
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGI 158
+ + N+L+ Y A+ +F S+ P+ +V W T++ + G +A+ +F +
Sbjct: 235 VRVCNALIDMYAKCGSADKAYLVFESLG-PNKTLVNWNTMVMAFAMHGDGVKALGLFKHM 293
Query: 159 DVK---PNANTLVSVLSACSSLGS 179
+ P+A + ++VL AC+ GS
Sbjct: 294 GQEGLIPDAKSYLAVLCACNYSGS 317
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ ++++ ++ +Q A+ L+ +ML + NH+TF L +C + +
Sbjct: 150 EMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFET 209
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH+ IK + +F+ +SLL Y I AH +F+ + DVV T IISG ++
Sbjct: 210 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQ 269
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+ +F + ++ N+ T SVL+A S L + GK +H+H LR+ + ++L
Sbjct: 270 MGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVL 329
Query: 202 DNAVLD 207
N+++D
Sbjct: 330 LNSLID 335
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L C A ++G +H H+IK +L ++++ L+ Y + A ++F+ + +V
Sbjct: 97 LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNV 156
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT +IS S+ GF EA+++F + D +PN T ++L++C + G+ IH+
Sbjct: 157 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 216
Query: 190 SLRNLNENNIILDNAVLD 207
+++ E+++ + +++LD
Sbjct: 217 AIKRNYESHMFVGSSLLD 234
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q + A+ L+ ++ + N T+ L A S A G ++H+HV++ G +
Sbjct: 269 QMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVV 328
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---- 158
+ NSL+ Y ++ A +IF+S+ ++W ++ G SK G +E +++F +
Sbjct: 329 LLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREEN 388
Query: 159 DVKPNANTLVSVLSACS 175
VKP++ T ++VLS CS
Sbjct: 389 KVKPDSITYLAVLSGCS 405
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQSST---PQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAH 80
+IP+P N+L++ L+ ++ + + +Y +ML S N +T ALKACS+
Sbjct: 83 QIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFALKACSVVP 142
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTII 139
A +G ++H+ + G ++Q LL+ Y +++ A +F+ +V ++ W+ +I
Sbjct: 143 ALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMI 202
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
G S+ G EA+ +F + DV P+ T+VSV+SAC+ G+ LG+ +HA R
Sbjct: 203 GGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGIT 262
Query: 197 NNIILDNAVLDF 208
++ L A++D
Sbjct: 263 VDLELSTALIDM 274
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + + T + AC+ A A G +HA + + G D+ + +L+
Sbjct: 213 EALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALI 272
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
Y I A +F+++ D W+ +I GL+ G + A+ +F + V+PN
Sbjct: 273 DMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNV 332
Query: 166 TLVSVLSACSSLG 178
T + VLSAC+ G
Sbjct: 333 TFIGVLSACAHSG 345
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
K+P +++ ++++ + +Q + A+ ++ + + N + ++AC+ +
Sbjct: 109 KMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVE 168
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG ++H V++ G D+++ SL+ FY +I A +F+ + VTWTTII+G +
Sbjct: 169 KGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYT 228
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
KCG ++++F + +V P+ + SVLSACS L + GK IHA+ LR E ++
Sbjct: 229 KCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS 288
Query: 201 LDNAVLDF 208
+ N ++DF
Sbjct: 289 VVNVLIDF 296
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ T+ ++ L+ +M + Y + L ACS+ + G +IHA+V++
Sbjct: 222 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 281
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ + N L+ FY + + ++F+ +V ++++WTT+ISG + F EA+ +F
Sbjct: 282 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 341
Query: 156 CGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ KP+ SVL++C S + + G+ +HA++++ E++ + N ++D
Sbjct: 342 GEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLID 396
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ + A+ L+++M N +TF + A S + + G + H ++K
Sbjct: 423 NAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVK 482
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G F+ N+L+ Y I A ++FNS ++ DVV W ++IS ++ G +EA+ M
Sbjct: 483 MGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGM 542
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + ++PN T V+VLSACS G
Sbjct: 543 FREMMKEGIQPNYVTFVAVLSACSHAG 569
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH +I G D F+ N L++ + +A +F+ + +++TW++++S S+ G+
Sbjct: 71 IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130
Query: 148 HKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+EA+ +F + K PN L SV+ AC+ LG + G +H +R+ + ++ +
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 190
Query: 204 AVLDF 208
+++DF
Sbjct: 191 SLIDF 195
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 108/203 (53%), Gaps = 9/203 (4%)
Query: 14 SFKQLNQIHAQIIKIPQPH--ILNTLLKLLTQS-STPQNAIPLYNKMLNCPSSY-NHYTF 69
SF L+ + K P+ + NTL++ +S + + LY +M+ + + +T+
Sbjct: 75 SFNDLDYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKRMIEQGAVLPDKHTY 134
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
LKAC+ A +G ++HA ++K+G D++I NSL+HFY + A +F+ +
Sbjct: 135 PFVLKACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCGCSEPAQYVFDKMPA 194
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+V+W +I L + G A+ +F + +P+ T+ SVL+AC+ L + LG +H
Sbjct: 195 RSLVSWNAMIDALVQFGEFDAALKLFVQLQELFEPDGYTMQSVLNACAGLCALSLGMWVH 254
Query: 188 AHSLRNLNEN---NIILDNAVLD 207
A+ LR + ++++DN +LD
Sbjct: 255 AYMLRKFDVEVTLDVLVDNCLLD 277
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 87 EIHAHVIKY---GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+IHA ++ H +F+ + +LHF + D+ A+++F+ P+ W T+I +
Sbjct: 47 QIHAQALRSTLPDSPHSLFLYSKILHF-SSFNDLDYAYRLFSKFDNPNAFMWNTLIRACA 105
Query: 144 KCGFHKEAI-----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ KE M V P+ +T VL AC+ L + GK +HA L++ E++
Sbjct: 106 RSYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESD 165
Query: 199 IILDNAVLDF 208
+ ++N+++ F
Sbjct: 166 VYINNSLIHF 175
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P ++ N ++ L Q A+ L+ ++ + YT L AC+ A
Sbjct: 191 KMPARSLVSWNAMIDALVQFGEFDAALKLFVQLQELFEP-DGYTMQSVLNACAGLCALSL 249
Query: 85 GLEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G+ +HA++++ + D+ + N LL Y + A Q+F + D+ +W ++I G
Sbjct: 250 GMWVHAYMLRKFDVEVTLDVLVDNCLLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILG 309
Query: 142 LSKCG 146
+ G
Sbjct: 310 FAMHG 314
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 5/183 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I N ++K +S + ++AI L+ ++ ++YT+ LK ++G ++
Sbjct: 71 PSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKV 130
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA V+K G D ++ NS + Y + + Q+F + D V+W +ISG +C
Sbjct: 131 HAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRF 190
Query: 149 KEAID----MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+EA+D M+ + KPN T+VS LSAC+ L + +LGK IH + L+ I+ NA
Sbjct: 191 EEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTT-IMGNA 249
Query: 205 VLD 207
+LD
Sbjct: 250 LLD 252
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
QL+Q + P I+ ++ Q + + I L+ +M + + L
Sbjct: 290 QLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLT 349
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
C+ + A ++G IH ++ + D + +L+ Y I + +IFN + D +
Sbjct: 350 GCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTS 409
Query: 135 WTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
WT+II GL+ G EA+++F CG+ KP+ T V+VLSACS G + G+ + H
Sbjct: 410 WTSIICGLAMNGKPSEALELFKAMQTCGL--KPDDITFVAVLSACSHAGLVEEGRKLF-H 466
Query: 190 SLRNL 194
S+ ++
Sbjct: 467 SMSSM 471
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 38/192 (19%)
Query: 48 QNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHV-------------- 92
+ A+ +Y +M + N T L AC++ + G EIH ++
Sbjct: 191 EEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNAL 250
Query: 93 ----IKYGHL---HDIF----IQN-----SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
K GH+ +IF ++N S++ YV + A +F D+V WT
Sbjct: 251 LDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWT 310
Query: 137 TIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+I+G + +E I +F + VKP+ +V++L+ C+ G+ + GK IH +
Sbjct: 311 AMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNY---- 366
Query: 194 LNENNIILDNAV 205
++EN I +D V
Sbjct: 367 IDENRIKVDAVV 378
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
P LNT+L++ S P+ A+ L+ + L P ++ T+ ++AC+ A ++G +H
Sbjct: 83 DPFPLNTVLRIAAGSPRPRVALELHRRRLALPDTH---TYPPLIQACARLLALREGECLH 139
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS--VVFPDVVTWTTIISGLSKCGF 147
A K G + +F+QNSL+H Y SAH++F+ V ++V+W ++++ + G
Sbjct: 140 AEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGR 199
Query: 148 HKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDN 203
E + +F G+D P+ T+VSVL+AC+ G+ LG+ +H + + L EN+ + N
Sbjct: 200 PNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHV-SN 258
Query: 204 AVLDF 208
A++D
Sbjct: 259 ALIDL 263
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L + P + ++ +ML + + +T L AC+ A G +H +V K
Sbjct: 188 NSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEK 247
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAID 153
G + + + N+L+ Y + A +IF + + VV+WT++I GL+ GF KEA++
Sbjct: 248 VGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 307
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLG 178
+F ++ + P T+V VL ACS G
Sbjct: 308 LFSLMEREKLVPTEITMVGVLYACSHCG 335
>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 638
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLLK L++ + + +++M +++T ALKAC + G IH + K
Sbjct: 10 NTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHGFLKK 69
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L D+++ +SL++ YV + A ++FN + PD+VTW++++SG K G +A++
Sbjct: 70 NVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVE 129
Query: 154 MF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F DV P+ TL++++SAC+ L + +LG+ +H +R N++ L N++L+
Sbjct: 130 FFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLN 187
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q+ A+ ++N+M++ + N T L+AC+ A+ ++G + H I+
Sbjct: 214 STVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIR 273
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + +L+ Y+ A+ +F+ + DVV+W +ISG + G +I+
Sbjct: 274 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEE 333
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + + +P+A ++ VL +CS LG K + H++ ++
Sbjct: 334 FSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIK 375
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ L +CS ++ H++VIKYG + FI SL+ Y + +A ++FN +
Sbjct: 352 KVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALK 411
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
D V WT++I+G G +A++ F + +VKPN T +S+LSACS G
Sbjct: 412 DTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAG 463
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 93/187 (49%), Gaps = 6/187 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
++ +P I+ ++++ ++ +P A+ + +M + + T + AC+ +
Sbjct: 102 ELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSR 161
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H V++ G +D+ + NSLL+ Y + A +F + DV++W+T+I+
Sbjct: 162 LGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYV 221
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G EA+ +F + +PN T++ VL AC++ + G+ H ++R E +
Sbjct: 222 QNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVK 281
Query: 201 LDNAVLD 207
+ A++D
Sbjct: 282 VSTALVD 288
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 102/187 (54%), Gaps = 7/187 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+ + ++ N T++ + P +AI +YN+M N T+ LKAC+ +
Sbjct: 59 KLVKKNVFNWTTMIGGYAEHGRPADAIEVYNQMRQEGGRPNEVTYLSILKACACPVGLKW 118
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G EIHAH+ G D+ +Q +L++ Y I A +F+ + +V+TW +I GL++
Sbjct: 119 GKEIHAHISHGGFRSDVPVQTALVNMYAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQ 178
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVL--SACSSLGSRKLGKAIHAHSLRNLNENNI 199
GF +EA +F + + P++ T +S+L +ACSS G+ K +H H+++ ++++
Sbjct: 179 HGFGQEAFSLFLQMQEEGFVPDSTTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDM 238
Query: 200 ILDNAVL 206
+ NA++
Sbjct: 239 RVCNALV 245
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N ++ L Q Q A L+ +M P S + + A ACS A A E+H H
Sbjct: 170 NVMIGGLAQHGFGQEAFSLFLQMQEEGFVPDSTTYLSILTA-TACSSAGALGWVKEVHRH 228
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+K G D+ + N+L+H Y + A +F ++ DV++W+ +I GL++ G EA
Sbjct: 229 AVKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGMLDRDVISWSAMIGGLAQNGCGHEA 288
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+F + V PN T VS+L+A +S G+ + K +H H+ +
Sbjct: 289 FSLFLKMQREGVIPNVTTYVSILTASASAGALEWVKQVHNHARK 332
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L Q Q A L+ +M + T+ L A + A E+H ++
Sbjct: 374 NAMIGGLAQHGCGQEAFSLFLRMRREGVVPDAITYMSILNASASTGALGWVKEVHRQAVQ 433
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L+H Y I A +F+ +V DV+TWT +ISGL++ +EA +
Sbjct: 434 AGLDSDVRVGNALVHMYCKTGSISDARLMFDGMVERDVITWTAMISGLAQNECGQEAFSL 493
Query: 155 FCGIDVK---PNANTLVSVLSACSSLG 178
F + + P A T S+L+ C+S G
Sbjct: 494 FLQMQREGFIPVATTYASILNVCTSTG 520
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ L Q+ A L+ KM N T+ L A + A A + ++H H K
Sbjct: 273 SAMIGGLAQNGCGHEAFSLFLKMQREGVIPNVTTYVSILTASASAGALEWVKQVHNHARK 332
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + N+L+H Y I A +F+ + +V TW +I GL++ G +EA +
Sbjct: 333 AGLGSDFRVCNALVHMYAKSGSIDDARLVFDQMSVRNVFTWNAMIGGLAQHGCGQEAFSL 392
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + V P+A T +S+L+A +S G+ K +H +++ ++++ + NA++
Sbjct: 393 FLRMRREGVVPDAITYMSILNASASTGALGWVKEVHRQAVQAGLDSDVRVGNALV 447
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K+P TL+ Q ++A+ + +M S N YTF + AC+ + G
Sbjct: 319 MKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWG 378
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH HV++ G + + + NS++ Y + SA +F+ + D+++W+TII+ S+
Sbjct: 379 EQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQG 438
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
G+ KEA D + KPN L SVLS C S+ + GK +HAH L
Sbjct: 439 GYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVL 487
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + +Q + A + M N + + L C ++G ++HAHV+
Sbjct: 429 STIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLC 488
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G H+ + ++L+ Y + A +IFN + ++++WT +I+G ++ G+ +EAI++
Sbjct: 489 IGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINL 548
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F + +KP+ T + VL+ACS G LG
Sbjct: 549 FEKISSVGLKPDYVTFIGVLTACSHAGMVDLG 580
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ +++M Y+ +TF ALKA + + G IH IK G F+ N+L
Sbjct: 241 EALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLA 300
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y ++F + PDVV+WTT+I+ + G + A++ F + +V PN
Sbjct: 301 TMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKY 360
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLR 192
T +V+SAC++L K G+ IH H LR
Sbjct: 361 TFAAVISACANLAIAKWGEQIHGHVLR 387
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
TL+ +S A+ L++ M P + + + ALKAC L G +H +K
Sbjct: 126 TLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVK 185
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ +F+ ++L+ Y+ V I ++F + +VV+WT II+GL G++ EA+
Sbjct: 186 SGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLY 245
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILD 202
F + V +++T L A + GKAIH +++ +E++ +++
Sbjct: 246 FSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVIN 297
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 53 LYNKMLNCPSSYNH-YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111
++++ L+ P +Y+ T T+ + + A Q+ L +A+ + H++ NS L
Sbjct: 48 VFSRNLDSPLTYSSPGTATECREL--IQQAKQEQLAQNAYSV-----HNMLELNSELKQL 100
Query: 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT---LV 168
V + + +F+ + D ++WTT+I+G EA+ +F + V+P ++
Sbjct: 101 VKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMI 160
Query: 169 SV-LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SV L AC + G+ +H S+++ N++ + +A++D
Sbjct: 161 SVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDM 201
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++ +Q A+ L+ +ML ++ N +TF L +C+ + Q
Sbjct: 537 EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQL 596
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH+ VIK IF+ +SLL Y I A ++F+ + DVV+ T IISG ++
Sbjct: 597 GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 656
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+D+F + ++ N T SVL+A S L + G+ +H+H LR ++L
Sbjct: 657 LGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 716
Query: 202 DNAVLD 207
N+++D
Sbjct: 717 QNSLID 722
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L C A ++G +HAH+IK + ++++ L+ Y + + A ++ + +
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+VV+WT +ISG S+ G+ EA+ +F + PN T +VL++C+S +LG+
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH+ ++ E++I + +++LD
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLD 621
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ ++ N+ T+ L A S A G ++H+HV++ + +QNSL
Sbjct: 661 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 720
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
+ Y + + +IF+S+ V++W ++ G SK G +EA+++F + VKP+
Sbjct: 721 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 780
Query: 164 ANTLVSVLSACSSLGSRKLGKAI 186
+ T ++VLS CS G G I
Sbjct: 781 SVTFLAVLSGCSHGGMEDRGLEI 803
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++ +Q A+ L+ +ML ++ N +TF L +C+ + Q
Sbjct: 70 EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQL 129
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH+ VIK IF+ +SLL Y I A ++F+ + DVV+ T IISG ++
Sbjct: 130 GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 189
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+D+F + ++ N T SVL+A S L + G+ +H+H LR ++L
Sbjct: 190 LGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 249
Query: 202 DNAVLD 207
N+++D
Sbjct: 250 QNSLID 255
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L C A ++G +HAH+IK + ++++ L+ Y + + A ++ + +
Sbjct: 13 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+VV+WT +ISG S+ G+ EA+ +F + PN T +VL++C+S +LG+
Sbjct: 73 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH+ ++ E++I + +++LD
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLD 154
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ ++ N+ T+ L A S A G ++H+HV++ + +QNSL
Sbjct: 194 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 253
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
+ Y + + +IF+S+ V++W ++ G SK G +EA+++F + VKP+
Sbjct: 254 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 313
Query: 164 ANTLVSVLSACSSLGSRKLGKAI 186
+ T ++VLS CS G G I
Sbjct: 314 SVTFLAVLSGCSHGGMEDRGLEI 336
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 105/183 (57%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I N++ + ++ + P L+ ++L ++YTF LKAC++A A ++G ++
Sbjct: 92 PDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQL 151
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K G ++++ +L++ Y +D+ SA +F+ +V P VV + +I+G ++
Sbjct: 152 HCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRP 211
Query: 149 KEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+ +F G +KPN TL+SVLS+C+ LGS LGK IH ++ ++ + ++ A+
Sbjct: 212 NEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTAL 271
Query: 206 LDF 208
+D
Sbjct: 272 IDM 274
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I +P ++ N ++ + + P A+ L+ +M N T L +C+L +
Sbjct: 189 RIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDL 248
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + K+ + + +L+ + + A IF + + D W+ +I +
Sbjct: 249 GKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYAN 308
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G ++++ MF + +V+P+ T + +L+ACS G + G+
Sbjct: 309 HGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q+ + AI + +M + YTF L AC A ++G ++HA +I+
Sbjct: 243 TMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRS 302
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
++F+ ++L+ Y K + A +F + + +VV+WT I+ G + GF +EA+ +F
Sbjct: 303 DCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVF 362
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
C + ++P+ TL SV+S+C++L S + G H +L + ++I + NA++
Sbjct: 363 CDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISSITVSNALV 416
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 35/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT+L + +A+ YN M+ + + N TF+ L S G +IH H++
Sbjct: 109 NTILSGYASYGSVSDAVKAYNSMMRDGVFNLNRITFSTMLILASSRELVDLGRQIHGHIM 168
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV-------------------- 133
K+G +F+ + L+ Y ++ A ++F+ + +VV
Sbjct: 169 KFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHNTMITGLLKFGMMEDSKR 228
Query: 134 -----------TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+WTT+I+GL + G +EAID F + + + T SVL+AC L +
Sbjct: 229 LFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTA 288
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK +HA +R+ +N+ + +A++D
Sbjct: 289 LREGKQVHAFIIRSDCTDNVFVGSALVD 316
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++ M + +T + +C+ + ++G + H + G + I
Sbjct: 351 QNGFSEEAVKVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISSIT 410
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ N+L+ Y I + ++FN + F D V+WT +ISG ++ G +E I++F +
Sbjct: 411 VSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALISGYAQFGKARETIELFERMLAHG 470
Query: 160 VKPNANTLVSVLSACSSLG 178
+KP+A T + VL ACS G
Sbjct: 471 LKPDAVTFIGVLLACSRAG 489
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LK C + ++H H+IK + F+ N+L++ Y + +I A +F+ + +
Sbjct: 15 LKFCCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRNS 74
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV--SVLSACSSLGS 179
+W TI+S SK G + ++F + PN + + ++LS +S GS
Sbjct: 75 FSWNTILSAYSKSGHLPKMKEIF---SLMPNRDGVSWNTILSGYASYGS 120
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 34/217 (15%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P NT++++ T S P A+ + +M + ++F LKAC+
Sbjct: 84 IQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLGGVFSA 143
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFY-------------------------------VTV 114
+H V+K+G L D+++ NSL+H Y V
Sbjct: 144 RCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKA 203
Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVL 171
D+ A ++F+ + D V+W TII+G +K + +EAI++F ++++P+ LVS L
Sbjct: 204 GDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTL 263
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SAC+ LG + GK IH + RN + + L ++DF
Sbjct: 264 SACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDF 300
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + + AI L++ M++ ++ L AC+ +KG +IH ++ +
Sbjct: 225 NTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIER 284
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D F+ L+ FY + A +IF+S ++ TW ++ GL+ G+ + ++
Sbjct: 285 NAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEY 344
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG----SRKL 182
F + VKP+ +++ VL CS G +RKL
Sbjct: 345 FSRMIEAGVKPDGISILGVLVGCSHSGLVDEARKL 379
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L PQ + ++ KM N T + L CS + G EIH V++
Sbjct: 110 NSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVR 169
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G + D+F+ ++ ++FY + A +F+ + DVVTW ++ S CGF ++ +++
Sbjct: 170 HGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNV 229
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + VKP+ T+ +LSACS L K GKAIH +L++ N+ + NA+++
Sbjct: 230 FREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNL 286
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L PQ + ++ +M + + L ACS + G IH +K
Sbjct: 312 NSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVK 371
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G + D+F+ +L++ Y + A +F+ + +VVTW ++ S CGF ++ +++
Sbjct: 372 HGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNV 431
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + VKP+ T++S+L ACS L K GK IH ++R+ ++ + NA+L
Sbjct: 432 FREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSL 488
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 90/178 (50%), Gaps = 7/178 (3%)
Query: 23 AQIIKIPQPH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
AQ + PH N+L PQ + ++ +M+ + T + L ACS
Sbjct: 195 AQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSD 254
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
+ G IH +K+G + ++F+ N+L++ Y + + A +F+ + +V+TW ++
Sbjct: 255 LQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSL 314
Query: 139 ISGLSKCGFHKEAIDMF--CGID-VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
S CGF ++ +++F G++ VKP+ + S+L ACS L K GK IH ++++
Sbjct: 315 ASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKH 372
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 3/165 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P AI +Y + F KAC+ + K + H + G + D+ I N+
Sbjct: 21 PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNA 80
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--CGID-VKPN 163
+H Y K + A ++F+ +V DVVTW ++ + CGF ++ +++F G++ VK N
Sbjct: 81 FIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKAN 140
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T+ S+L CS L K GK IH +R+ ++ + +A ++F
Sbjct: 141 PLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNF 185
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 42/227 (18%)
Query: 23 AQIIKIPQPH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
AQ + PH N+L PQ + ++ +M+ + T L ACS
Sbjct: 397 AQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSD 456
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----------- 127
+ G IH +++G + D+F+ N+LL Y + A +F+ +
Sbjct: 457 LQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGI 516
Query: 128 ------------------------VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV--- 160
V D +TW+ +I G K +EA+++F +
Sbjct: 517 LTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGF 576
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
KP+ T+ S+L ACS ++GK IH + R+ + ++ NA++D
Sbjct: 577 KPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVD 623
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
F Q+N+ + +I ++ +K +S + A+ ++ KM + T L+
Sbjct: 533 FSQMNRDEVKADEITWSVVIGGCVK----NSRIEEAMEIFRKMQTMGFKPDETTIYSILR 588
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
ACSL+ + G EIH +V ++ D+ N+L+ Y + + +F+ + DV +
Sbjct: 589 ACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFS 648
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
W T+I G KEA+ +F + VKP++ T VLSACS
Sbjct: 649 WNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACS 692
>gi|224084768|ref|XP_002307403.1| predicted protein [Populus trichocarpa]
gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +Q A ++ +MLN N +T + LKAC A + G +IH ++K
Sbjct: 111 TMITACSQQGRCGEAFGMFTQMLNGGFLPNGFTASGILKACGEEKALKFGKQIHGAIVKK 170
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D+F+ SL+ Y ++ + ++FN + + VTWT+II+G ++ G +EAI +F
Sbjct: 171 MYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTWTSIIAGYARKGLGEEAICLF 230
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V N T+VS+L AC +G+ G+ +HA ++N +++N L + ++ F
Sbjct: 231 RLMMRRRVVSNNLTIVSMLRACGLIGALLAGREVHAQIIKNCSQSNEYLGSTLVWF 286
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF L CS + G ++HA V+K G+ ++ + +++++FYV D+ SA +F
Sbjct: 40 NSKTFVCVLNLCSRRLDFELGRQVHARVVK-GNWRNLIVDSAVVYFYVQCGDLKSAFCVF 98
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ +V DVV+WTT+I+ S+ G EA MF + PN T +L AC + K
Sbjct: 99 DRMVERDVVSWTTMITACSQQGRCGEAFGMFTQMLNGGFLPNGFTASGILKACGEEKALK 158
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
GK IH ++ + ++++ + +++D
Sbjct: 159 FGKQIHGAIVKKMYKDDVFVGTSLVD 184
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M+ N+ T L+AC L A G E+HA +IK + ++ ++L
Sbjct: 224 EEAICLFRLMMRRRVVSNNLTIVSMLRACGLIGALLAGREVHAQIIKNCSQSNEYLGSTL 283
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ FY + +A ++ + F DVV+WT IISG + G EA++ + V+PN+
Sbjct: 284 VWFYCKCGESRTASKVLQQMPFRDVVSWTAIISGHACLGHESEALEFLKEMMEEGVEPNS 343
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S L AC++L + GK IH+ + + +N+ + +A++
Sbjct: 344 FTYSSALKACANLETVLQGKLIHSSANKTPASSNVFVGSALI 385
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ +M+ N +T++ ALKAC+ +G IH+ K ++F+ ++L+
Sbjct: 326 EALEFLKEMMEEGVEPNSFTYSSALKACANLETVLQGKLIHSSANKTPASSNVFVGSALI 385
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
H Y + A Q+F+S+ ++VTW +I G + G +EA+ +
Sbjct: 386 HMYARCGYVSEAIQVFDSMPERNLVTWRAMIMGYVRNGLCQEALKL 431
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+VV+WT +I+G K G EA+ F V PN+ T V VL+ CS +LG+ +H
Sbjct: 5 NVVSWTAMINGYFKFGLDDEALSYFSQAIKDGVVPNSKTFVCVLNLCSRRLDFELGRQVH 64
Query: 188 AHSLRNLNENNIILDNAVLDF 208
A ++ N N+I+D+AV+ F
Sbjct: 65 ARVVKG-NWRNLIVDSAVVYF 84
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ ++++ ++ +Q A+ L+ +ML + NH+TF L +C + +
Sbjct: 122 EMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFET 181
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH+ IK + +F+ +SLL Y I AH +F+ + DVV T IISG ++
Sbjct: 182 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQ 241
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+ +F + ++ N+ T SVL+A S L + GK +H+H LR+ + ++L
Sbjct: 242 MGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVL 301
Query: 202 DNAVLD 207
N+++D
Sbjct: 302 LNSLID 307
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L C A ++G +H H+IK +L ++++ L+ Y + A +F+ +
Sbjct: 65 YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+VV+WT +IS S+ GF EA+++F + D +PN T ++L++C + G+
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH+ +++ E+++ + +++LD
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLD 206
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q + A+ L+ ++ + N T+ L A S A G ++H+HV++ G +
Sbjct: 241 QMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVV 300
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---- 158
+ NSL+ Y ++ A +IF+S+ ++W ++ G SK G +E +++F +
Sbjct: 301 LLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREEN 360
Query: 159 DVKPNANTLVSVLSACS 175
VKP++ T ++VLS CS
Sbjct: 361 KVKPDSITYLAVLSGCS 377
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 109/202 (53%), Gaps = 11/202 (5%)
Query: 17 QLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+L QIHA +++ P N +++ T+ P+ A+ +Y ML + YT
Sbjct: 204 ELYQIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIDMLRAGILPDCYTLP 263
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
KA SLA+A GL++H+ I+ G D + ++ L+ Y + D+ A ++F
Sbjct: 264 IVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVFEQNHNR 323
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ +W II+GLS+ G KEA++MF + ++P+ T+VSV SAC SLG+ +L +H
Sbjct: 324 KLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMH 383
Query: 188 --AHSLRNLNENNIILDNAVLD 207
++ ++NI++ N+++D
Sbjct: 384 KFVFQVKVTGKSNILMLNSLID 405
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-- 92
N ++ L+Q + A+ ++ K+ + +T AC + L++H V
Sbjct: 329 NAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQ 388
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K +I + NSL+ Y + A ++F+++ +V +WT++I G + G K+A+
Sbjct: 389 VKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQAL 448
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+ F + V PN T V VLSAC G GK
Sbjct: 449 ENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGK 483
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L + + A +Y++M N T+ L AC A G EIH+ V+K
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + DI +QN+L+ Y I A +FN +V D+++WT +I GL+K G EA+ +
Sbjct: 475 DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
F + +KPN T S+L+ACSS + G+ IH
Sbjct: 535 FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIH 570
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H N ++ Q + A+ L +M + T + L +C A + G EIH
Sbjct: 210 HSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVE 269
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+K L D+ + N +L+ Y I A ++F+ + VV+WT II G + CG + A
Sbjct: 270 AMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIA 329
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++F + V PN T ++VL+A S + K GK +H+H L +E+++ + A++
Sbjct: 330 FEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALV 387
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L +S A+ ++ M N T+T L ACS A G IH VI+ G D
Sbjct: 522 LAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATD 581
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ N+L++ Y + A Q+F+ + D+V + +I G + KEA+ +F +
Sbjct: 582 AHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE 641
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+KP+ T +++L+AC++ GS + K IH+ L++ ++ L NA++
Sbjct: 642 EGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALV 690
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A ++ KM N T+ L A S A + G +H+H++ GH D+ + +L+
Sbjct: 329 AFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVK 388
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y Q+F +V D++ W T+I GL++ G +EA +++ + + PN T
Sbjct: 389 MYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKIT 448
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
V +L+AC + + G+ IH+ +++ +I + NA++
Sbjct: 449 YVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALI 488
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 37/202 (18%)
Query: 20 QIHAQIIKI---PQPHILNTLLKLLTQSSTPQNA-----------IPLYNKMLNCPSSYN 65
+IH Q+I+ H+ NTL+ + + + ++A I YN M+ +++N
Sbjct: 568 RIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHN 627
Query: 66 --------------------HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
T+ L AC+ + + + EIH+ V+K G+L D + N
Sbjct: 628 LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGN 687
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKP 162
+L+ Y A +F+ ++ +V++W II G ++ G ++ + +F + +KP
Sbjct: 688 ALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKP 747
Query: 163 NANTLVSVLSACSSLGSRKLGK 184
+ T VS+LSACS G + G+
Sbjct: 748 DIVTFVSLLSACSHAGLLEEGR 769
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + + LK C G E+H H+I++ + D + N+L++ Y+ I A Q++
Sbjct: 140 NSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVW 199
Query: 125 NSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLGS 179
N + + V +W ++ G + G+ +EA+ + + A T + +LS+C S +
Sbjct: 200 NKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSA 259
Query: 180 RKLGKAIHAHSLR-----NLNENNIILD 202
+ G+ IH +++ ++N N IL+
Sbjct: 260 LECGREIHVEAMKARLLFDVNVANCILN 287
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 36/216 (16%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAHQKGL 86
P N++++ ++SSTP + Y+++L+ + ++YTFT ++ + AH G
Sbjct: 72 PTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGS 131
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV------------- 133
+H +KYG +D +Q+ L++ Y + + + H++F+S+ PD+V
Sbjct: 132 SVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMG 191
Query: 134 ------------------TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLS 172
W +ISG +CG +EA+ +F + VK N ++VSVLS
Sbjct: 192 DVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLS 251
Query: 173 ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
ACS LG+ G+ HA+ RN + L A++D
Sbjct: 252 ACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDM 287
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
P N ++ Q + A+ L+N M N + L ACS A +G H
Sbjct: 207 DPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAH 266
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
A++ + + + +L+ Y ++ A ++F + +V TW++ I GL+ G +
Sbjct: 267 AYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGE 326
Query: 150 EAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+ +++F + V+PN T VSVL CS +G + G+
Sbjct: 327 KCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGR 364
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 34/216 (15%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P I N +++ L+ S +P AI Y M++ + N YT+ LK+C+ + +G
Sbjct: 84 IGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEG 143
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH ++K G +D F+ SL+ YV ++ +A +F DVV++T +I+G +
Sbjct: 144 KQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASR 203
Query: 146 GFHKEAIDMFCGIDVK----------------------------------PNANTLVSVL 171
GF +A+++F I V+ PN +TL+SVL
Sbjct: 204 GFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVL 263
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
SAC+ GS K+G + + + E+NI + NA++D
Sbjct: 264 SACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALID 299
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L+Q +IP ++ N ++ TQS + A+ + +ML + N T L A
Sbjct: 206 LDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLSA 265
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ + + + G + + + ++G +I + N+L+ Y D+ +A +F + +V++W
Sbjct: 266 CAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISW 325
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+I G + +KEA+ +F + +V+PN TL+S+L AC++LG+ LGK IHA+ +
Sbjct: 326 NVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDK 385
Query: 193 NL 194
N+
Sbjct: 386 NM 387
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ T S + A+ L+ +ML N T L AC+ A G IHA++ K
Sbjct: 326 NVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDK 385
Query: 95 -YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+L + + SL+ Y +I A+QIF+ + + +W +ISG + G AI
Sbjct: 386 NMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAIS 445
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+F + + P+ T + VLSAC+ G LG H H
Sbjct: 446 LFSRMTKEGLVPDNITFIGVLSACNHAGLLDLGHINHFH 484
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 87 EIHAHVIKYGHLHDI-FIQNSLLHFYVT--VKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+IH+ VIK G LH+ F + L+ F V D+ A +F S+ P+ + W II GLS
Sbjct: 42 QIHSQVIKTG-LHNTHFALSKLIEFCVISPYGDLSYALLLFKSIGKPNQIIWNNIIRGLS 100
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
AI + + PN T VL +C+ + S GK IH L+
Sbjct: 101 LSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGKQIHGQILK 152
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 11/203 (5%)
Query: 17 QLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+L QIHA +++ P N +++ T+ P+ A+ +Y ML + YT
Sbjct: 209 ELYQIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIAMLQAGILPDCYTLP 268
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
KA SLA+A GL++H+ I+ G D + ++ L+ Y + D+ A ++F
Sbjct: 269 IVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVFEQNHNR 328
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ +W II+GLS+ G KEA++MF + ++P+ T+VSV SAC SLG+ +L +H
Sbjct: 329 KLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMH 388
Query: 188 --AHSLRNLNENNIILDNAVLDF 208
++ ++NI++ N+++D
Sbjct: 389 KFVFQVKVTGKSNILMLNSLIDM 411
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-- 92
N ++ L+Q + A+ ++ K+ + +T AC + L++H V
Sbjct: 334 NAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQ 393
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K +I + NSL+ Y + A ++F+++ +V +WT++I G + G K+A+
Sbjct: 394 VKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQAL 453
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+ F + V PN T V VLSAC G GK
Sbjct: 454 ENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGK 488
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 7/182 (3%)
Query: 33 ILNTLLKLLTQS-STPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
+ NTL++ S + A LY KML SS + +TF LKAC+ +G ++H
Sbjct: 93 MWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHC 152
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
++K+G D+++ N L+H Y + + A ++F+ + +V+W ++I L + G +
Sbjct: 153 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 212
Query: 151 AIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN---NIILDNAV 205
A+ +F + +P+ T+ SVLSAC+ LGS LG HA LR + + ++++ N++
Sbjct: 213 ALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSL 272
Query: 206 LD 207
++
Sbjct: 273 IE 274
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N+++ L + +A+ L+ +M + YT L AC+ +
Sbjct: 188 EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP-DGYTMQSVLSACAGLGSLSL 246
Query: 85 GLEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G HA +++ + D+ ++NSL+ Y + A Q+F + D+ +W +I G
Sbjct: 247 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 306
Query: 142 LSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ G +EA++ F + +V+PN+ T V +L AC+ G G+ +R+
Sbjct: 307 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 363
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 102/187 (54%), Gaps = 6/187 (3%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQ 83
+IPQP++ NTL++ SS P + ++ ML +C N +TF KA S
Sbjct: 131 QIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLH 190
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H VIK D+FI NSL++FY + AH++F ++ DVV+W +I+ +
Sbjct: 191 LGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFA 250
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
G +A+ +F + DVKPN T+VSVLSAC+ + G+ I ++ N ++I
Sbjct: 251 LGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLI 310
Query: 201 LDNAVLD 207
L+NA+LD
Sbjct: 311 LNNAMLD 317
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 8/168 (4%)
Query: 19 NQIHAQIIKIPQPH----ILNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQAL 73
N A I PH N L+ Q+ P+ A+ L+++M L+ + + T AL
Sbjct: 355 NYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICAL 414
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
A + A G IH ++ K+ + + SLL Y ++ A ++F++V DV
Sbjct: 415 CASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVY 474
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
W+ +I L+ G K A+D+F + +KPNA T ++L AC+ G
Sbjct: 475 VWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAG 522
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 35/190 (18%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ P A+ L+ +M N T L AC+ + G I +++
Sbjct: 243 NAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIEN 302
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N++L YV I A +FN + D+V+WTT++ G +K G + EA +
Sbjct: 303 NGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCI 362
Query: 155 FCGI-----------------------------------DVKPNANTLVSVLSACSSLGS 179
F + D KP+ TL+ L A + LG+
Sbjct: 363 FDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGA 422
Query: 180 RKLGKAIHAH 189
G IH +
Sbjct: 423 IDFGHWIHVY 432
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-----NHYTFTQALKACSLAHAHQKGLEIH 89
+TLL++ + S + L +NC + N T L+ + +IH
Sbjct: 33 STLLRVSVKCSALSTPLSLGQIAMNCTEAVKGEKGNEVESTNILEFIDQCTNTMQLKQIH 92
Query: 90 AHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
AH+++ D + + LL Y + + A +FN + P++ W T+I G +
Sbjct: 93 AHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSD 152
Query: 148 HKEAIDMFC----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++ +F PN T + A S L LG +H ++ +++ + N
Sbjct: 153 PTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILN 212
Query: 204 AVLDF 208
++++F
Sbjct: 213 SLINF 217
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 101/187 (54%), Gaps = 3/187 (1%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I P NT+++ +S P A Y +M+ + +T+ LKA S + ++
Sbjct: 77 VIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVRE 136
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+ I+ G +F+QNSLLH Y D SA+++F + D+V W ++I+G +
Sbjct: 137 GEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFAL 196
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G EA+ +F + V+P+ T+VS+LSA + LG+ +LG+ +H + L+ N +
Sbjct: 197 NGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHV 256
Query: 202 DNAVLDF 208
N++LD
Sbjct: 257 TNSLLDL 263
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + P A+ L+ +M + +T L A + A + G +H +++K
Sbjct: 188 NSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 247
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + NSLL Y I A ++F+ + + V+WT++I GL+ GF +EA+++
Sbjct: 248 VGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALEL 307
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
F G + P+ T V VL ACS G
Sbjct: 308 FKEMEGQGLVPSEITFVGVLYACSHCG 334
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 79 AHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVTWT 136
A + K +IHA I++G L++ + L+ V++ S A+ +F + P+V TW
Sbjct: 28 ASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWN 87
Query: 137 TIISGLSKCG-------FHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
TII G ++ F+++ + + C V+P+ +T +L A S + + G+AIH+
Sbjct: 88 TIIRGYAESDNPSPAFLFYRQMV-VSC---VEPDTHTYPFLLKAISKSLNVREGEAIHSV 143
Query: 190 SLRNLNENNIILDNAVL 206
++RN E+ + + N++L
Sbjct: 144 TIRNGFESLVFVQNSLL 160
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 78/181 (43%), Gaps = 12/181 (6%)
Query: 19 NQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
++H ++K+ H+ N+LL L + + A ++++M S N ++T +
Sbjct: 239 RRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEM----SERNAVSWTSLIVG 294
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-----VFP 130
++ ++ LE+ + G + +L+ + + F + + P
Sbjct: 295 LAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIP 354
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+ + ++ LS+ G K+A + + V+PNA ++L AC+ G LG+ +H
Sbjct: 355 RIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHL 414
Query: 191 L 191
L
Sbjct: 415 L 415
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 21/201 (10%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQN-AIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
IP P + NTL+ LT S + A LYN +L + N +TF KAC+ Q
Sbjct: 62 IPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQ 121
Query: 84 KGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G +HAHV+K+ +D F+QNSLL+FY + + +F+ + PD+ TW T+++
Sbjct: 122 HGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAY 181
Query: 143 SKCGFHK-------------EAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
++ H EA+ +FC + +KPN TLV+++SACS+LG+ G
Sbjct: 182 AQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWA 241
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H + LRN + N + A++D
Sbjct: 242 HGYVLRNNLKLNRFVGTALVD 262
>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
Length = 1008
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 3/179 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I N+++ Q+ A ++ +ML N TF + C + G +HAHV
Sbjct: 324 IWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHV 383
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY + + +LL Y + D+ SA IF + ++++W ++ISG G + ++
Sbjct: 384 MKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASM 443
Query: 153 DMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
D FC + + P+A ++V++LSACS L + LGKA HA S R ++N+ + NA+L F
Sbjct: 444 DAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAF 502
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNK--MLNCPSSYNHYTFTQALKACSLAHA 81
+ I+ P + N +++ L ++ + +Y K +L CPS + +TF +KAC+ A
Sbjct: 113 EAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVLGCPS--DDFTFPFVIKACTALGA 170
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+H V++ ++ IQ +L+ FY + A + + + PD+VTW +ISG
Sbjct: 171 VWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISG 230
Query: 142 LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
S GF KE ++ I+ +KPN +T S++ C+ + +GK+IH +++
Sbjct: 231 YSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKS 285
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 93/198 (46%), Gaps = 7/198 (3%)
Query: 16 KQLNQIHAQII--KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
K + A+++ KI QP ++ N L+ + + + + ++ N TF
Sbjct: 202 KTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFAS 261
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
+ C+ G IH V+K G D F+ +L+ Y ++F A +F+S +
Sbjct: 262 IIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKN 321
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
VV W ++IS ++ EA MF + +++PN T VS++ C + + GK++HA
Sbjct: 322 VVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHA 381
Query: 189 HSLRNLNENNIILDNAVL 206
H ++ ++ + + A+L
Sbjct: 382 HVMKYRLDSQLSVATALL 399
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ + + A+ L +KM + T + C +A +G+ +H + IK
Sbjct: 528 NTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIK 587
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L+ Y DI + +F + + +V+W +I+G E +
Sbjct: 588 TGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMAS 647
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
FC + KPN TL+++L +C +L GK+IHA ++R
Sbjct: 648 FCQMIREGQKPNYVTLLNLLPSCRTLLQ---GKSIHAFAVR 685
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N ++ + Q+ + ++ + ++L+ ++ TF + AC + + A+V
Sbjct: 725 LWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYV 784
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I+ G I I N+L+ + +I A +IF + D V+W+T+I+G G + A+
Sbjct: 785 IQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTMINGYGLHGDSEAAL 844
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+ + +KP+ T SVLSACS G
Sbjct: 845 ALLSQMRLSGMKPDGITYASVLSACSHGG 873
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 6/146 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N+ T L +C +G IHA ++ G + + I SL+ Y ++I S +F
Sbjct: 659 NYVTLLNLLPSC---RTLLQGKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIFLF 715
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
D+ W I+S + KE++ FC + V+P+ T +S++SAC L S
Sbjct: 716 EMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLN 775
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
L ++ A+ ++ + +I++ NA++D
Sbjct: 776 LSNSVMAYVIQKGFDKHIVISNALID 801
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L ACS A G HA + ++ I N+LL FY + S+ ++F + +
Sbjct: 465 LSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNA 524
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
++W T+ISG G K+A+ + + ++ + TL+S++ C + G +H +
Sbjct: 525 ISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGY 584
Query: 190 SLRNLNENNIILDNAVL 206
+++ ++ L NA++
Sbjct: 585 AIKTGFACDVSLVNALI 601
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ +P+ AI Y +M + S + TF LKAC+ A +G +I V+K
Sbjct: 88 NDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFNEGRKIQVDVMK 147
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++++QN+++HFY + K I A ++F+ + + VV+W ++S + ++ +
Sbjct: 148 HGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGL 207
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F G P+ T+V +LSACS LG+ G+ +H+ + N L A++D
Sbjct: 208 FVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDM 264
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L + ++ L+ KM + T L ACS G +H+ VI+
Sbjct: 189 NAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIE 248
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + + +L+ Y + A +F+ ++ +V TW+ +I GL++ GF KEA+++
Sbjct: 249 KGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALEL 308
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + + PN T + VL ACS G
Sbjct: 309 FPKMKQSSISPNYVTFLGVLCACSHAG 335
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 36/217 (16%)
Query: 28 IPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P++ NT+++ ++SSTP AI L+ ML T+ KA + A G
Sbjct: 84 IPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDG 143
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H V+K G D FIQN++++ Y + A ++F+ +V DVV ++I GL+KC
Sbjct: 144 AQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKC 203
Query: 146 G--------FHK-----------------------EAIDMFC---GIDVKPNANTLVSVL 171
G F EA+++F G V+P+ T+VS+L
Sbjct: 204 GEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLL 263
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SAC+ LG+ K G+ +H + R E N+I+ A++D
Sbjct: 264 SACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDM 300
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ A+ L+ KM + +T L AC+ A + G +H +V K
Sbjct: 225 NSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYV-K 283
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
GH ++ + +++ Y I A ++F + + W +II GL+ G+ ++AI+
Sbjct: 284 RGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIE 343
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
F + D+KP+ + + VL+AC +G+ +GKA SL
Sbjct: 344 YFSKLEASDLKPDHVSFIGVLTACKYIGA--VGKARDYFSL 382
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHAH+IK G H + +L F + DI A+ +F ++ P++ W TII G S+
Sbjct: 43 KIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRS 102
Query: 146 GFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
AI DM C V P T SV A + LG+ G +H ++ E + +
Sbjct: 103 STPHLAISLFVDMLCS-SVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFI 161
Query: 202 DNAVL 206
N ++
Sbjct: 162 QNTII 166
>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 386
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 104/183 (56%), Gaps = 4/183 (2%)
Query: 29 PQPHILNTLLKLLTQ-SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
P + NTL+K ++ ++ YN ML S + YTFT +K+C+ + + G
Sbjct: 73 PDSFLFNTLIKSTSKFHKFSIYSLFFYNCMLLSDISPSAYTFTSIVKSCADLSSLKLGKV 132
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H HV+ G D+++Q +L+ Y D+ +A ++F+ + VV+W +IISG + GF
Sbjct: 133 VHGHVLVNGFGLDVYVQAALVACYAKSGDLGNARKVFDKMRERSVVSWNSIISGYEQNGF 192
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+EAI +F + +P++ T V VLSAC+ LG+ +G +H +++ + + N++L +
Sbjct: 193 GREAIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIGHGLDLNVVLGTS 252
Query: 205 VLD 207
+++
Sbjct: 253 LIN 255
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + AI L+ KM + TF L AC+ A G +H + I
Sbjct: 181 NSIISGYEQNGFGREAIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIG 240
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ + SL++ Y + A ++F+S+ +VVTWT +ISG G ++A+ +
Sbjct: 241 HGLDLNVVLGTSLINMYTRCGTVTKAREVFDSMKEKNVVTWTAMISGYGTNGHGRQAVQL 300
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLG 183
F + + PN+ T V+VLSAC+ G K G
Sbjct: 301 FDEMKRRGPCPNSVTFVAVLSACAHAGLVKEG 332
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++HA+VI G H + LL+ I QIF SV PD + T+I SK
Sbjct: 30 QVHAYVIVSGSGHSRSLLTKLLNLACAAGSIIYTRQIFLSVANPDSFLFNTLIKSTSK-- 87
Query: 147 FHKEAI-DMF---CGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
FHK +I +F C + D+ P+A T S++ +C+ L S KLGK +H H L N
Sbjct: 88 FHKFSIYSLFFYNCMLLSDISPSAYTFTSIVKSCADLSSLKLGKVVHGHVLVN 140
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q A+ ++ KM++ N +T ALKAC+ A + G ++H ++K
Sbjct: 82 TMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKR 141
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ +DI + ++L+ Y ++F A +F+ + + +TWT++ISG ++ G +EA+ +F
Sbjct: 142 LYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLF 201
Query: 156 CGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++ N T+V +LSAC S+ S LGK +HA ++N E N+ + + ++ F
Sbjct: 202 RKMKMRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQIIKNCMEQNLQIGSTLVWF 257
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF LK+C + G ++H V+K G ++ + +++ HFY D+ +A +F
Sbjct: 11 NSLTFVCLLKSCGERCDAKLGQQVHCCVVK-GGWSNVIVDSAVAHFYAQCGDVAAASTVF 69
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + DVV+WTT+I+ + G +A+ MF + +PN T+ S L AC+ + +
Sbjct: 70 DRMASRDVVSWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALR 129
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GK +H ++ L + +I + +A++
Sbjct: 130 FGKQLHGAIVKRLYKYDIHVGSALV 154
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ + + +++ QS + A+ L+ KM NH T L AC +
Sbjct: 172 KMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQSIYL 231
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G E+HA +IK ++ I ++L+ FY + A +I ++ D V WT +ISG +
Sbjct: 232 GKELHAQIIKNCMEQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDAVAWTAMISGYNN 291
Query: 145 CGFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G + EA +D V PN T S L AC+ L + + G+ IH + +N+ +
Sbjct: 292 LGHNVEALKSLDEMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVNKTQAFSNVFV 351
Query: 202 DNAVLDF 208
+++D
Sbjct: 352 GCSLIDM 358
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ ++ML + N YT++ ALKAC+ A + G IH V K ++F+ SL+
Sbjct: 297 EALKSLDEMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVNKTQAFSNVFVGCSLI 356
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID-MFC----GIDVKPN 163
Y+ + A ++F+++ ++VTW +I+G ++ +EA+ M+ G DV +
Sbjct: 357 DMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQNCLCEEALKYMYLMQQDGYDV--D 414
Query: 164 ANTLVSVLSACSS 176
L +VLS+C
Sbjct: 415 DFVLSTVLSSCGG 427
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 68/262 (25%)
Query: 14 SFKQLNQIHAQIIKI----------------------------------PQPHILNTLLK 39
+FK L QIHA+II+ P N +++
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIR 98
Query: 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
T + + A+ LY M+ + + +TF +KAC+ + G +H +IKYG
Sbjct: 99 ANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSG 158
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+F+QN+L+ FY A ++F + +VV+WTT+ISGL CG +EA +F I
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218
Query: 160 VK----------------------------------PNANTLVSVLSACSSLGSRKLGKA 185
K PN T+VS++ AC+ +G LG+
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH ++++N E + L A++D
Sbjct: 279 IHDYAIKNCIEIGVYLGTALID 300
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ + QS A+ +++ M+ + YN T + L AC+ A A + G IH VI
Sbjct: 1321 NSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI 1380
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K +++ + S++ Y + A + F+ + +V +WT +++G G KEA+D
Sbjct: 1381 KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALD 1440
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + VKPN T VSVL+ACS G
Sbjct: 1441 IFYKMVRAGVKPNYITFVSVLAACSHAG 1468
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 18/207 (8%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKML----------NCPSSY 64
QL A +IP ++++ +++ Q+ NA+ L+ L N P
Sbjct: 1192 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVP--L 1249
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ L ACS +H V+K G I + N+L+ Y + ++F
Sbjct: 1250 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVF 1309
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG----IDVKPNANTLVSVLSACSSLGSR 180
+ + D ++W ++I+ ++ G EA+++F G + V+ NA TL +VL AC+ G+
Sbjct: 1310 DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 1369
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK IH ++ E N+ + +++D
Sbjct: 1370 RAGKCIHDQVIKMDLEYNVCVGTSIID 1396
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++++ ++ ++ P+ A+ L+ +M N YT +KAC+
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + IK +++ +L+ Y I A ++F ++ + TW ++I+ L
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGV 335
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKA 185
G +EA+++F ++VKP+A T + VL AC + + K G A
Sbjct: 336 HGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCA 379
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H N+++ L + A+ ++ + +F +K+CS G H
Sbjct: 1108 HSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQ 1167
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC------ 145
+G D+F+ ++L+ Y + A +F+ + +VV+WT++I+G +
Sbjct: 1168 AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 1227
Query: 146 -----GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
F +E ++ G +V ++ +VSVLSACS + + + + +H ++ + +I
Sbjct: 1228 LLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIG 1287
Query: 201 LDNAVLD 207
+ N ++D
Sbjct: 1288 VGNTLMD 1294
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA +I+ G +D + L+H Y T I A +F + P TW II + G
Sbjct: 45 QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104
Query: 147 FHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
++A+ +M C + + T V+ AC++ S LGK +H ++ ++ +
Sbjct: 105 LSEQALMLYKNMVCQ-GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163
Query: 203 NAVLDF 208
N ++DF
Sbjct: 164 NNLIDF 169
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 68/262 (25%)
Query: 14 SFKQLNQIHAQIIKI----------------------------------PQPHILNTLLK 39
+FK L QIHA+II+ P N +++
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIR 98
Query: 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
T + + A+ LY M+ + + +TF +KAC+ + G +H +IKYG
Sbjct: 99 ANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSG 158
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+F+QN+L+ FY A ++F + +VV+WTT+ISGL CG +EA +F I
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218
Query: 160 VK----------------------------------PNANTLVSVLSACSSLGSRKLGKA 185
K PN T+VS++ AC+ +G LG+
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH ++++N E + L A++D
Sbjct: 279 IHDYAIKNCIEIGVYLGTALID 300
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ + QS A+ +++ M+ + YN T + L AC+ A A + G IH VI
Sbjct: 2194 NSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI 2253
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K +++ + S++ Y + A + F+ + +V +WT +++G G KEA+D
Sbjct: 2254 KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALD 2313
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + VKPN T VSVL+ACS G
Sbjct: 2314 IFYKMVRAGVKPNYITFVSVLAACSHAG 2341
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 18/207 (8%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKML----------NCPSSY 64
QL A +IP ++++ +++ Q+ NA+ L+ L N P
Sbjct: 2065 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVP--L 2122
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ L ACS +H V+K G I + N+L+ Y + ++F
Sbjct: 2123 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVF 2182
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG----IDVKPNANTLVSVLSACSSLGSR 180
+ + D ++W ++I+ ++ G EA+++F G + V+ NA TL +VL AC+ G+
Sbjct: 2183 DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 2242
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK IH ++ E N+ + +++D
Sbjct: 2243 RAGKCIHDQVIKMDLEYNVCVGTSIID 2269
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++++ ++ ++ P+ A+ L+ +M N YT +KAC+
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + IK +++ +L+ Y I A ++F ++ + TW ++I+ L
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGV 335
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKA 185
G +EA+++F ++VKP+A T + VL AC + + K G A
Sbjct: 336 HGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCA 379
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H N+++ L + A+ ++ + +F +K+CS G H
Sbjct: 1981 HSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQ 2040
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC------ 145
+G D+F+ ++L+ Y + A +F+ + +VV+WT++I+G +
Sbjct: 2041 AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 2100
Query: 146 -----GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
F +E ++ G +V ++ +VSVLSACS + + + + +H ++ + +I
Sbjct: 2101 LLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIG 2160
Query: 201 LDNAVLD 207
+ N ++D
Sbjct: 2161 VGNTLMD 2167
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA +I+ G +D + L+H Y T I A +F + P TW II + G
Sbjct: 45 QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104
Query: 147 FHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
++A+ +M C + + T V+ AC++ S LGK +H ++ ++ +
Sbjct: 105 LSEQALMLYKNMVCQ-GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163
Query: 203 NAVLDF 208
N ++DF
Sbjct: 164 NNLIDF 169
>gi|255582516|ref|XP_002532043.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528286|gb|EEF30333.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 468
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ Y +ML+ + T L +C A ++G+++H+H I++G +I + N+L+
Sbjct: 225 DALNSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQGMQVHSHGIRFGCDSEIHVANTLI 284
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNAN 165
Y D++SA +F+S+ VTWT++ISG ++ G EA+ +F ++ KP+
Sbjct: 285 SMYSKFGDVYSARCLFDSMCNRSCVTWTSMISGYAEKGNMDEALKLFNAMEAAGEKPDLV 344
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T++SV+S C G ++GK IH ++ N ++N+++ NA++D
Sbjct: 345 TVLSVISGCGQTGILEVGKWIHVYADSNCLKHNVVVCNALID 386
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHA 90
++ N+ ++ + AI L+ ++ N++TF LKAC+ L++ H + IH
Sbjct: 4 NLFNSQIREAVNQNCAHKAISLFRQLKQKGIEPNNFTFPFILKACAKLSNLHYSQV-IHT 62
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
HVIK ++F+Q +LL V + A+ +F + DV +W ++ G ++ GF +
Sbjct: 63 HVIKSPFYSNVFVQTALLDMCVKCHQLDIAYNVFVKMPKRDVTSWNAMLLGFAQLGFSER 122
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
MF + V P++ TL+ V A S + +L K++H+ +R
Sbjct: 123 VFCMFREMRFAGVFPDSVTLMGVSGAISCMKDLELAKSVHSFGIR 167
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ + A+ L+N M + T + C + G IH +
Sbjct: 313 SMISGYAEKGNMDEALKLFNAMEAAGEKPDLVTVLSVISGCGQTGILEVGKWIHVYADSN 372
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
H++ + N+L+ Y I A +FN++ VVTWTT+I+G + G KE++D+F
Sbjct: 373 CLKHNVVVCNALIDMYAKCGSIDDAWDLFNTMPDRTVVTWTTMIAGCALNGLFKESLDLF 432
Query: 156 ---CGIDVKPN 163
+KPN
Sbjct: 433 YQMIDFGLKPN 443
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 7/183 (3%)
Query: 17 QLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
QL+ + +K+P+ + N +L Q + ++ +M + T
Sbjct: 88 QLDIAYNVFVKMPKRDVTSWNAMLLGFAQLGFSERVFCMFREMRFAGVFPDSVTLMGVSG 147
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS--VVFPDV 132
A S + +H+ I+ G +D+ + N+ + Y D+ A +FN V V
Sbjct: 148 AISCMKDLELAKSVHSFGIRIGIHNDVSVANTWISLYAKCYDLAMAESVFNGIEVGLRSV 207
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+W ++I+G + +A++ + + P+ +T+V++LS+C + + G +H+H
Sbjct: 208 VSWNSMIAGYAYLEKRIDALNSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQGMQVHSH 267
Query: 190 SLR 192
+R
Sbjct: 268 GIR 270
>gi|296090683|emb|CBI41082.3| unnamed protein product [Vitis vinifera]
Length = 413
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 9/191 (4%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
+IP P I NT+++ S PQ ++ L+ +M + + Y+ + ++AC
Sbjct: 57 EIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPG 116
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIIS 140
G ++H V+K G D+F++ +L+ Y DI A I + + P D+V+W T+I
Sbjct: 117 NGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMIH 176
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
G + G EA+ +F + +V P+ T+VSVLSAC +G+ +GK IH RN E
Sbjct: 177 GHASLGDSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEI 236
Query: 198 NIILDNAVLDF 208
++ L +++D
Sbjct: 237 DLKLGTSLVDM 247
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 104/184 (56%), Gaps = 10/184 (5%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P LNT+L++ S P+ A+ L+ + L P ++ T+ ++AC+ A ++G +HA
Sbjct: 772 PFPLNTVLRIAAGSPRPRVALELHRRRLALPDTH---TYPPLIQACARLLALREGECLHA 828
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS--VVFPDVVTWTTIISGLSKCGFH 148
K G + +F+QNSL+H Y SAH++F+ V ++V+W ++++ + G
Sbjct: 829 EAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRP 888
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNA 204
E + +F G+D P+ T+VSVL+AC+ G+ LG+ +H + + L EN+ + NA
Sbjct: 889 NEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHV-SNA 947
Query: 205 VLDF 208
++D
Sbjct: 948 LIDL 951
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L + P + ++ +ML + + +T L AC+ A G +H +V K
Sbjct: 876 NSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEK 935
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAID 153
G + + + N+L+ Y + A +IF + + VV+WT++I GL+ GF KEA++
Sbjct: 936 VGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 995
Query: 154 MFCGID---VKPNANTLVSVLSACSSLG 178
+F ++ + P T+V VL ACS G
Sbjct: 996 LFSLMEREKLVPTEITMVGVLYACSHCG 1023
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 6/205 (2%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L+ +L F + P P+I NTL++ + + ++A+ +Y M + ++
Sbjct: 42 LRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDN 101
Query: 67 YTFTQALKACS-LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+TF LKAC+ L H GL +H+ VIK G D+F++ L+ Y + A ++F+
Sbjct: 102 FTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFD 161
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL 182
+ +VV+WT II G + G EA+ +F G+ ++P++ TLV +L ACS +G
Sbjct: 162 EIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLAS 221
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
G+ I + + + N+ + +++D
Sbjct: 222 GRWIDGYMRESGSVGNVFVATSLVD 246
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +L + +T + L ACS G I ++ + G + ++F+ SL+
Sbjct: 187 ALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVD 246
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + A ++F+ +V DVV W+ +I G + G KEA+D+F + +V+P+
Sbjct: 247 MYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYA 306
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIILDNAVLDF 208
+V V SACS LG+ +LG A L + +E +N +L A++DF
Sbjct: 307 MVGVFSACSRLGALELGN--WARGLMDGDEFLSNPVLGTALIDF 348
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L++ + P+ A+ ++ +M + Y ACS A + G +
Sbjct: 273 SALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDG 332
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L + + +L+ FY + A ++F + D V + +ISGL+ CG A +
Sbjct: 333 DEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGV 392
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + ++P+ NT V +L C+ G
Sbjct: 393 FGQMVKVGMQPDGNTFVGLLCGCTHAG 419
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 5/179 (2%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+ NT+++ + + P+ AI +YN + + YT +KAC L +G +IH
Sbjct: 45 YTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQ 104
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS--KCGFHK 149
+ K G ++ IQ +LL+ Y + QIF+ + D+V W +I+ + C +
Sbjct: 105 IFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKV 164
Query: 150 EAI--DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ DM +VKPN T VS+LS CSSL + + GKA+H + +NL E ++ + NA++
Sbjct: 165 REVSYDMVRS-NVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALI 222
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 42/247 (17%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIK-------IPQPHILNTLLKLLTQS--------S 45
+FV L+P + + QIH QI K I Q +LN L L +
Sbjct: 83 VFVIKACGLRPVI--LEGEQIHGQIFKLGFEFEVIIQTALLN-LYGLFDEDCGLQQIFDE 139
Query: 46 TPQNAIPLYNKML------NCP-----SSY---------NHYTFTQALKACSLAHAHQKG 85
PQ + ++N ++ NCP SY N T L CS A ++G
Sbjct: 140 MPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREG 199
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H +V K D+F+ N+L+ Y I A Q+F + +VV+WT++I+G S
Sbjct: 200 KAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDN 259
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIIL 201
EA+ F ++ ++P+ T++ V+ CS L S +LG+ I + ++ L + + +
Sbjct: 260 NCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAI 319
Query: 202 DNAVLDF 208
NA++D
Sbjct: 320 ANALMDM 326
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L+ + ++ P A+ + +M + T + CS + + G I +V+K
Sbjct: 251 SLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKI 310
Query: 96 GHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L + I N+L+ + +I A QIF+ + +V+WT +I GL+ G A+
Sbjct: 311 GLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVR 370
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
FC + KP++ +S+LSACS G
Sbjct: 371 FCQMQREGFKPDSLVFLSLLSACSHAG 397
>gi|224058585|ref|XP_002299553.1| predicted protein [Populus trichocarpa]
gi|222846811|gb|EEE84358.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 27 KIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKG 85
K P N +++ Q P+NA+ L+ ML N S N TF LKACS A ++G
Sbjct: 86 KNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGPNKLTFPFVLKACSQVRAIEEG 145
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H V K+G D+F+QNSL++ Y + I A Q+FN + DVV+W ++ISGL
Sbjct: 146 KQVHGLVFKHGLSEDLFVQNSLINMYSSCGLIGFACQVFNKIDDLDVVSWNSMISGLVDL 205
Query: 146 GFHKEAIDMF 155
GF +E MF
Sbjct: 206 GFVEEGKQMF 215
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 65 NHYTFTQ-ALKAC----SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DI 117
NH F +LK+C + + ++HA + K G + + LL + + +I
Sbjct: 16 NHNQFQSFSLKSCLSLLEICKFTTEFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANI 75
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSA 173
A IFN P+ + +I G ++ + A+ +F C + PN T VL A
Sbjct: 76 NYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGPNKLTFPFVLKA 135
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
CS + + + GK +H ++ ++ + N++++
Sbjct: 136 CSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLIN 169
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 10/193 (5%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P +I N+++K + S +P A+ +Y +M + +H+TF LKACSL + + G
Sbjct: 65 IDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLG 124
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H ++K G D++ +LL Y D+ +A ++F+ + +VV WT++I+G
Sbjct: 125 QCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISN 184
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR------NLNE 196
EA+ ++ ++ V PN T+V+VL AC+ G+ +H + + N
Sbjct: 185 DCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNS 244
Query: 197 N-NIILDNAVLDF 208
N N+IL A++D
Sbjct: 245 NFNVILATAIVDM 257
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P +++ N+++ Q A+ L++ M + TF + AC+ A
Sbjct: 273 KMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVS 332
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +HA+V K D I +L+ Y D A Q+F+ + DV WT++I GL+
Sbjct: 333 GQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAM 392
Query: 145 CGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
G +EA+ F + P+ T + VLSACS +G + GK H S++N+
Sbjct: 393 HGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKN-HFISMKNV 445
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+ +++ +L+ + P A+ +Y M + N T L AC+ + G
Sbjct: 166 IPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAG 225
Query: 86 LEIHAHVIKYG-------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
+H + G ++ + +++ Y + +A +FN + ++V W ++
Sbjct: 226 RWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSM 285
Query: 139 ISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRNL 194
I ++ G EA+D+F + + P+ T + V+ AC+ LG+ G+A+HA+ S NL
Sbjct: 286 IGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNL 345
Query: 195 NENNII 200
++ I
Sbjct: 346 TDDTAI 351
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H +I + D+ + L+ F Y ++ A +FN + P + W ++I G S
Sbjct: 23 RLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSI 82
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
EA+ M+ + K P+ T VL ACS + LG+ +H
Sbjct: 83 SESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVH 128
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 3/169 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+++P TL+ Q ++A+ + +M S N YTF + +C+ A + G
Sbjct: 286 MRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWG 345
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH HV++ G ++ + + NS++ Y + SA +F+ + D+++W+TIIS S+
Sbjct: 346 EQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQG 405
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
G+ KEA D + KPN L SVLS C S+ + GK +HAH L
Sbjct: 406 GYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLL 454
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113
+++M Y+ +TF ALKA + + G IH IK G F+ N+L Y
Sbjct: 213 FSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNK 272
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSV 170
++F + PDVV+WTT+IS + G + A++ F + V PN T +V
Sbjct: 273 CGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAV 332
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+S+C++L + K G+ IH H LR N + + N+++
Sbjct: 333 ISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSII 368
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + +Q + A + M N + + L C ++G ++HAH++
Sbjct: 396 STIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLC 455
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G H+ + ++++ Y + A +IFN + D+++WT +I+G ++ G+ +EAI++
Sbjct: 456 IGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINL 515
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F + +KP+ + VL+AC+ G LG
Sbjct: 516 FEKISSVGLKPDYVMFIGVLTACNHAGMVDLG 547
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 5/172 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
TL+ +S A+ L++ M P + + + ALKAC+L G +H +K
Sbjct: 93 TLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVK 152
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +H +F+ ++L+ Y+ V I ++F ++ +VV+WT II+GL G++ E +
Sbjct: 153 SGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLY 212
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILD 202
F + V +++T L A + GKAIH +++ +E++ +++
Sbjct: 213 FSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVIN 264
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+H++ NS L V + A +F+ + D ++WTT+I+G EA+ +F
Sbjct: 54 VHNMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSN 113
Query: 158 IDVKPNANT---LVSV-LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ V P ++SV L AC+ + G+ +H S+++ +++ + +A++D
Sbjct: 114 MWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALID 167
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L + + A +YN+M N T+ L AC + A G EIH+ V K
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI +QN+L+ Y I A +F+ +V DV++WT +I GL+K GF EA+ +
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ + V+PN T S+L+ACSS + + G+ IH
Sbjct: 417 YQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIH 452
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 42/243 (17%)
Query: 6 LKSLKPTLSFKQL---NQIHAQIIK---IPQPHILNTLLKLLTQSSTPQNAIPLYNK--- 56
+K LK + K L Q+H II+ +P + +N L+ + Q + + A ++ K
Sbjct: 27 MKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSY 86
Query: 57 MLNCPSSYN------------------------------HYTFTQALKACSLAHAHQKGL 86
M S+N T L +C A + G
Sbjct: 87 MERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGR 146
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
EIH ++ G L D+ + N +L+ Y I A ++F+ + VV+WT I G + CG
Sbjct: 147 EIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCG 206
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ A ++F ++ V PN T +SVL+A SS + K GKA+H+ L +E++ +
Sbjct: 207 RSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGT 266
Query: 204 AVL 206
A++
Sbjct: 267 ALV 269
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L +S A+ +Y +M N T+T L ACS A + G IH V++ G D
Sbjct: 404 LAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATD 463
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ N+L++ Y + A Q+F+ ++ D+V + +I G + KEA+ +F +
Sbjct: 464 AHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE 523
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+KP+ T +++L+AC++ GS + + IH
Sbjct: 524 EGLKPDKVTYINMLNACANSGSLEWAREIH 553
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A ++ KM N T+ L A S A + G +H+ ++ GH D + +L
Sbjct: 209 ETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTAL 268
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y Q+F +V D++ W T+I GL++ G+ +EA +++ + V PN
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNK 328
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T V +L+AC + + GK IH+ + ++I + NA++
Sbjct: 329 ITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALI 370
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 20 QIHAQIIKI---PQPHILNTLLKLLTQSSTPQNA-----------IPLYNKMLNCPSSYN 65
+IH Q+++ H+ NTL+ + + + ++A I YN M+ +++N
Sbjct: 450 RIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHN 509
Query: 66 --------------------HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
T+ L AC+ + + + EIH V K G D + N
Sbjct: 510 LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGN 569
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKP 162
+L+ Y A +F + +V++W II G ++ G ++A+ +F + VKP
Sbjct: 570 ALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKP 629
Query: 163 NANTLVSVLSACSSLGSRKLGK 184
+ T VS+LSACS G + G+
Sbjct: 630 DIVTFVSLLSACSHAGLLEEGR 651
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + + LK C G ++H H+I++ + D + N+L++ Y+ I A Q++
Sbjct: 22 NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVW 81
Query: 125 NSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
+ + + V +W ++ G + G+ ++A+ + + + P+ T++S LS+C S G+
Sbjct: 82 KKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGA 141
Query: 180 RKLGKAIHAHSLR 192
+ G+ IH +++
Sbjct: 142 LEWGREIHFQAMQ 154
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 33 ILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+ NTL++ Q++ + +A+ YN M S N +TF LKAC+ + G +HA
Sbjct: 193 LFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHAS 252
Query: 92 VIKYGHLHDIFIQNSLLHFYVTV-----KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++K+G D ++N+L+H Y SA ++F+ D VTW+ +I G ++ G
Sbjct: 253 MVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAG 312
Query: 147 FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
A+ +F + V P+ T+VSVLSAC+ LG+ +LGK + ++ R ++ L N
Sbjct: 313 NSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCN 372
Query: 204 AVLD 207
A++D
Sbjct: 373 ALID 376
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + T L AC+ A + G + +++ + + + + N+L+
Sbjct: 317 AVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALID 376
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
+ D+ A ++F + +V+WT++I GL+ G EA+ +F + V P+
Sbjct: 377 MFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVA 436
Query: 167 LVSVLSACSSLG 178
+ VLSACS G
Sbjct: 437 FIGVLSACSHSG 448
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 32/154 (20%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++++M+ + F L ACS H+ ++ GH +
Sbjct: 418 AVLVFDEMMEQGVDPDDVAFIGVLSACS-----------HSGLVDKGH-----------Y 455
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVS 169
++ T++++FS + P + + ++ LS+ G EA++ + V+PN S
Sbjct: 456 YFNTMENMFS--------IVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRS 507
Query: 170 VLSACSSLGSRKLGKAIHAHSLRN--LNENNIIL 201
+++AC + G KLG+++ +R +E+N +L
Sbjct: 508 IVTACHARGELKLGESVAKELIRREPSHESNYVL 541
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ +S P NA+ LY ML S+ ++YT+ K C+ EI HVI
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G D+F+ N+++H V+ ++ +A ++F+ D+V+W +II+G +CG EA D
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFD 242
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN-NIILDNAVLD 207
++ ++V P+ T++ V+SA + L + LG+ +H S+ + N + L NA++D
Sbjct: 243 LYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH-QSIEEMGLNLTVPLANALMD 299
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N L+ Q+ + A+ L+++M + + T L ACS A
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDV 406
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ +H +V K+ ++ + +L+ Y +I A Q+F + + +TWT II GL+
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLAL 466
Query: 145 CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLG 178
G AI F I + P+ T + VLSAC G
Sbjct: 467 HGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGG 503
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + A LY KM + T + A + G ++H + +
Sbjct: 225 NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE 284
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N+L+ Y+ K+I +A +F ++ VV+WTT++ G +K G + A+ +
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344
Query: 155 FCGI----------------------------------DVKPNANTLVSVLSACSSLGSR 180
F + V P+ T+V+ LSACS LG+
Sbjct: 345 FNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+G +H + ++ N+ L A++D
Sbjct: 405 DVGIWMHHYVDKHNLTMNVALGTALVD 431
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ +S P NA+ LY ML S+ ++YT+ K C+ EI HVI
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G D+F+ N+++H V+ ++ +A ++F+ D+V+W +II+G +CG EA D
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFD 242
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN-NIILDNAVLD 207
++ ++V P+ T++ V+SA + L + LG+ +H S+ + N + L NA++D
Sbjct: 243 LYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH-QSIEEMGLNLTVPLANALMD 299
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N L+ Q+ + A+ L+++M + + T L ACS A
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDV 406
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ +H +V K+ ++ + +L+ Y +I A Q+F + + +TWT II GL+
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLAL 466
Query: 145 CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLG 178
G AI F I + P+ T + VLSAC G
Sbjct: 467 HGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGG 503
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + A LY KM + T + A + G ++H + +
Sbjct: 225 NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE 284
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N+L+ Y+ K+I +A +F ++ VV+WTT++ G +K G + A+ +
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344
Query: 155 FCGI----------------------------------DVKPNANTLVSVLSACSSLGSR 180
F + V P+ T+V+ LSACS LG+
Sbjct: 345 FNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+G +H + ++ N+ L A++D
Sbjct: 405 DVGIWMHHYVDKHNLTMNVALGTALVD 431
>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g01580
gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLLK L++ + + ++ M +++T ALKAC G IH V K
Sbjct: 29 NTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVKK 88
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L D+++ +SL++ Y+ + A ++F+ + PD+VTW++++SG K G +A++
Sbjct: 89 DVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVE 148
Query: 154 MF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F DV P+ TL++++SAC+ L + +LG+ +H +R N++ L N++L+
Sbjct: 149 FFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLN 206
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q+ A+ ++N M++ + N T L+AC+ AH ++G + H I+
Sbjct: 233 STVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIR 292
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + +L+ Y+ A+ +F+ + DVV+W +ISG + G +I+
Sbjct: 293 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEE 352
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + + +P+A +V VL +CS LG + K H++ ++
Sbjct: 353 FSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIK 394
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 94/187 (50%), Gaps = 6/187 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
++ +P I+ ++++ ++ +P A+ + +M+ + + T + AC+ +
Sbjct: 121 ELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSR 180
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H VI+ G +D+ + NSLL+ Y + A +F + DV++W+T+I+
Sbjct: 181 LGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYV 240
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G EA+ +F + +PN T++ VL AC++ + G+ H ++R E +
Sbjct: 241 QNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVK 300
Query: 201 LDNAVLD 207
+ A++D
Sbjct: 301 VSTALVD 307
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ L +CS ++ H++VIKYG + FI SL+ Y + +A ++FN +
Sbjct: 371 KVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 430
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
D V WT++I+G G +A++ F + +VKPN T +S+LSACS G
Sbjct: 431 DTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAG 482
>gi|357475145|ref|XP_003607858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508913|gb|AES90055.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 708
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +Q A+ L ++ML N YT ALKAC A + G ++H ++K
Sbjct: 321 TIITACSQHGLGHEALLLLSQMLVDGFFPNEYTICAALKACGENKAFKCGTQLHGAIVKK 380
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D+FI SL+ Y +I S+ ++F+ + + TWT+IISG ++ GF +EA++ F
Sbjct: 381 ICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTSIISGYARNGFGEEALNFF 440
Query: 156 CGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ K N +TLV V++AC ++ + +G+ +HA ++++ N+ ++ ++ F
Sbjct: 441 RLMKRKKVYVNKSTLVCVMTACGTIKASLIGREVHAQKIKSVILTNMYIETTLVWF 496
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + AC A G E+HA IK L +++I+ +L+ FY KD A +
Sbjct: 451 NKSTLVCVMTACGTIKASLIGREVHAQKIKSVILTNMYIETTLVWFYCRCKDYSHAFNVL 510
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT IISG ++ G EA++ + V PN+ T S L AC+ L +
Sbjct: 511 KYIPLRDVVSWTAIISGCARLGLETEALEFLREMMEEGVLPNSYTYSSALKACAKLETPA 570
Query: 182 L 182
L
Sbjct: 571 L 571
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +K ++ N+L+ Y+ + + A ++F+ + + VTWT II G K
Sbjct: 172 VHTIALKCFRGSSTYVDNNLICSYLRLGKLAQARKVFDGMSRRNTVTWTAIIDGYLKYDL 231
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
EA +F G V+PN+ V ++ C LGK IHA L++ N N+I+D+A
Sbjct: 232 DDEAFKLFHGSIKHGVQPNSKMFVCFMNLCCKRVDLALGKQIHARILKS-NWRNLIVDSA 290
Query: 205 VLDF 208
V++F
Sbjct: 291 VVNF 294
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IHA ++K + ++ + +++++FY I SA + F+ + DVV WTTII+ S+
Sbjct: 270 GKQIHARILK-SNWRNLIVDSAVVNFYSKCGKISSAFRTFDRMAKRDVVCWTTIITACSQ 328
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G EA+ + + V PN T+ + L AC + K G +H ++ + ++++ +
Sbjct: 329 HGLGHEALLLLSQMLVDGFFPNEYTICAALKACGENKAFKCGTQLHGAIVKKICKSDVFI 388
Query: 202 DNAVLD 207
+++D
Sbjct: 389 GTSLID 394
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ LE A L ++F+ ++L++ Y I A Q+F
Sbjct: 552 NSYTYSSALKACA-------KLETPA-------LSNVFVNSALIYMYAKCGYIADAFQVF 597
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGS 179
+++ ++V+W +I G ++ G ++A+ + + + + L +VL+AC + S
Sbjct: 598 DNMPERNLVSWKAMILGYARNGHCRKALQLMYRMRAEGFVVDDYILTTVLTACGGIDS 655
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSV 127
+ L+ C+ A GL+IHAHVIK G D F+ NSLL Y + D ++F+ +
Sbjct: 62 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 121
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
DV++WT++ISG + G ++++F V+PNA TL +V+ ACS LG KLG+
Sbjct: 122 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGR 181
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
H L ++N ++ +A++D
Sbjct: 182 IFHGVVLGRGFDSNYVIASALID 204
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P N++ L+ KML N +T + +KACS + G H V+ G + I ++
Sbjct: 142 PMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASA 201
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKP 162
L+ + + A Q+F+ ++ PD + WT+IIS L++ F EA+ F + + P
Sbjct: 202 LIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCP 261
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ T +VL+AC +LG K GK +HA + N++++++++D
Sbjct: 262 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVD 306
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
CP + TF L AC ++G E+HA VI G ++ +++SL+ Y +
Sbjct: 260 CPDGF---TFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGE 316
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGS 179
+ +IF+ + + V+W+ ++ G + G K I +F ++ K + ++L C+ L +
Sbjct: 317 SQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME-KVDLYCFGTILRTCAGLAA 375
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ GK +H +R ++I+++A++D
Sbjct: 376 VRQGKEVHCQYIRKGGWRDVIVESALVDL 404
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL Q+ ++ I ++ KM + Y F L+ C+ A ++G E+H I+
Sbjct: 333 SALLGGYCQNGDFKSVIQIFRKM----EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIR 388
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ ++++L+ Y I A IF+ + +++TW ++I G ++ G +EA+ +
Sbjct: 389 KGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRI 448
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ + + +L ACS G
Sbjct: 449 FNQMVKEGIKPDYISFIGILFACSHRG 475
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSV 127
+ L+ C+ A GL+IHAHVIK G D F+ NSLL Y + D ++F+ +
Sbjct: 121 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 180
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
DV++WT++ISG + G ++++F V+PNA TL +V+ ACS LG KLG+
Sbjct: 181 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGR 240
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
H L ++N ++ +A++D
Sbjct: 241 IFHGVVLGRGFDSNYVIASALID 263
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P N++ L+ KML N +T + +KACS + G H V+ G + I ++
Sbjct: 201 PMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASA 260
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKP 162
L+ + + A Q+F+ ++ PD + WT+IIS L++ F EA+ F + + P
Sbjct: 261 LIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCP 320
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ T +VL+AC +LG K GK +HA + N++++++++D
Sbjct: 321 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVD 365
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
CP + TF L AC ++G E+HA VI G ++ +++SL+ Y +
Sbjct: 319 CPDGF---TFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGE 375
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGS 179
+ +IF+ + + V+W+ ++ G + G K I +F ++ K + ++L C+ L +
Sbjct: 376 SQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME-KVDLYCFGTILRTCAGLAA 434
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ GK +H +R ++I+++A++D
Sbjct: 435 VRQGKEVHCQYIRKGGWRDVIVESALVDL 463
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL Q+ ++ I ++ KM + Y F L+ C+ A ++G E+H I+
Sbjct: 392 SALLGGYCQNGDFKSVIQIFRKM----EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIR 447
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ ++++L+ Y I A IF+ + +++TW ++I G ++ G +EA+ +
Sbjct: 448 KGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRI 507
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ + + +L ACS G
Sbjct: 508 FNQMVKEGIKPDYISFIGILFACSHRG 534
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 6/200 (3%)
Query: 14 SFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFT 70
SF L+ +I QP++ NTL++ S P +++ ++ +ML + P N +TF
Sbjct: 77 SFSSLDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFP 136
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+KA + + IH IK D+FI NSL+H Y + D+ SA+ +F +
Sbjct: 137 FVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEK 196
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
DVV+W ++I G G +A+++F +V+PN T+V VLSAC+ + G+ +
Sbjct: 197 DVVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVC 256
Query: 188 AHSLRNLNENNIILDNAVLD 207
+ RN N+ + NA+LD
Sbjct: 257 HYIERNGINVNLTVSNAMLD 276
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ Q P+ A+ +++++ L+ + + T L AC+ A G IH ++
Sbjct: 334 NVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIK 393
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K + + SL+ Y ++ A IF SV DV W+ +I+GL+ G + AID
Sbjct: 394 KQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAID 453
Query: 154 MFCGID---VKPNANTLVSVLSACSSLG----SRKLGKAIHAHSLRNLNENNIILDNAV 205
+F + V+PNA T ++L ACS G R + + + + L ++++L +
Sbjct: 454 LFFEMQETKVRPNAVTFTNLLCACSHTGLVNEGRMFFNQMESSTFKRLQFHDLVLSRTI 512
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
L+ ++ +KI + ++ N+++K P A+ L+ M N T L
Sbjct: 182 DLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLS 241
Query: 75 ACSLA-----------HAHQKGLEIHAHV--------IKYGHLHD------------IFI 103
AC+ + + G+ ++ V +K G L D IF
Sbjct: 242 ACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFS 301
Query: 104 QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV--- 160
+++ Y +D +A +F+++ D+ W +IS + G KEA+ +F + +
Sbjct: 302 WTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKT 361
Query: 161 -KPNANTLVSVLSACSSLGSRKLGKAIHAH 189
KP+ TLVS LSAC+ LG+ +G IH +
Sbjct: 362 AKPDEVTLVSTLSACAQLGAIDIGGWIHVY 391
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ T++ A+ LY+++L + YTF L++C+ A +G E+HAHV++
Sbjct: 104 NVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVR 163
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D+ + N+L+ YV D+ SA +F+ + D ++W +ISG + E +++
Sbjct: 164 FDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLEL 223
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + + P+ T+ SV+SAC LG +LG +H++ +R + NI + N+++
Sbjct: 224 FFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLI 278
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 2/164 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P A+ Y M + + T L AC+ G+++H + GH+ + + NS
Sbjct: 318 PDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANS 377
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG--IDVKPNA 164
L+ Y K I A +IF+ + DV++WT++I+GL EA+ F + KPN+
Sbjct: 378 LIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSKPNS 437
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
TL+S LSAC+ +G+ GK IHAH+L+ + L NA+LD
Sbjct: 438 VTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDL 481
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T + AC L + G ++H++V++ + +I + NSL+ Y++V A +F+ +
Sbjct: 238 TMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGM 297
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGK 184
DVV+WTTIISG +A++ + +++ P+ T+ SVLSAC+SLG +G
Sbjct: 298 ECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGM 357
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H + R + +++ N+++D
Sbjct: 358 KLHELAERTGHILYVVVANSLID 380
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ + KM+ S N T AL AC+ A G EIHAH +K G D F+ N++L
Sbjct: 422 ALIFFRKMI-LKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILD 480
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
YV + +A FN + DV W +++G ++ G +++F + ++ P+ T
Sbjct: 481 LYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVT 539
Query: 167 LVSVLSACSSLG 178
+S+L ACS G
Sbjct: 540 FISLLCACSRSG 551
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
L + + N+LL +V D+ +A +F + D+ +W ++ G +K GF EA+ ++
Sbjct: 66 LLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHR 125
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
I ++P+ T SVL +C+ G+ +HAH +R
Sbjct: 126 ILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVR 163
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 35/218 (16%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P I NT+ + SS P +A+ LY M++ + YTF LK+C+ + ++G
Sbjct: 49 IQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEG 108
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFY-------------------------------VTV 114
+IH HV+K G DI++ SL+ Y V+
Sbjct: 109 QQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSR 168
Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSV 170
I SA ++F+ + DVV+W +ISG + G +KEA+++F + +V+P+ +T+V+V
Sbjct: 169 GYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTV 228
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+SAC+ S +LG+ +H+ + +N+ + NA++D
Sbjct: 229 VSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDL 266
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 94/180 (52%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ ++ + A+ L+ +M+ + + T + AC+ + + + G +H+ +
Sbjct: 190 NAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWIN 249
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+G ++ I N+L+ Y ++ +A ++F+ + DV++W T+I G + +KEA+
Sbjct: 250 DHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALL 309
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH---SLRNLNENNIILDNAVLD 207
+F + PN T++S+L AC+ LG+ +G+ IH + L+ + N L +++D
Sbjct: 310 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLID 369
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML + N T L AC+ A G IH ++ K
Sbjct: 292 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINK 351
Query: 95 Y--GHLHDIF-IQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKE 150
G + ++ +Q SL+ Y DI +A Q+F+S + + TW +ISG + G
Sbjct: 352 KLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANA 411
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
A D+F + ++P+ T V +LSACS G LG+ I
Sbjct: 412 AFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNI 450
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 19/190 (10%)
Query: 29 PQPHI----LNTLLKLLTQSSTPQNAIPLYNKMLN----CPSSYNHYTFTQALKACSLAH 80
P+P + N L++ L + P++A+ L+ +ML+ CP + +T ALK+CS
Sbjct: 77 PRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCP---DQHTVACALKSCSRMC 133
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
G I A+ +K G + D F+ +SL+H Y + +D+ +A +F++V VV W II+
Sbjct: 134 TLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIIT 193
Query: 141 GLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS-----LR 192
K G E ++MF G + V + TLVSV++AC +G KLGK + + +R
Sbjct: 194 AYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVR 253
Query: 193 NLNENNIILD 202
N N ++D
Sbjct: 254 NRNLMTALID 263
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + ++ ML +++ T + AC + G + +V +
Sbjct: 189 NAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDE 248
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + + +L+ Y ++ A ++F+ + DVV W+ +ISG ++ +EA+ +
Sbjct: 249 KGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALAL 308
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + +V+PN T+VSVLSAC+ LG+ + GK +H++ R IIL A++DF
Sbjct: 309 FSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDF 365
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ+ + A+ L+++M N T L AC++ A + G +H+++ + I
Sbjct: 297 TQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTI 356
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ +L+ FY I A + F S+ + TWT +I G++ G +EA+++F +
Sbjct: 357 ILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKA 416
Query: 159 DVKPNANTLVSVLSACS 175
++P T + VL ACS
Sbjct: 417 SIEPTDVTFIGVLMACS 433
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q A+ L+ +ML + N +TF L +C+ + G +IH+H+ K + + I
Sbjct: 87 SQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHI 146
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
F+ +SLL Y I A +F + DVV+ T IISG ++ G +EA+++FC +
Sbjct: 147 FVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQRE 206
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ N T S+L+A S L + GK +H+H LR ++L N+++D
Sbjct: 207 GMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLID 255
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L C A ++G +HAH+IK +L +++ L+ Y + + A +F+ +
Sbjct: 13 YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+VV+WT +ISG S+ GF EA+ +F + D +PN T +VLS+C+ +LG+
Sbjct: 73 ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH+H + EN+I + +++LD
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLD 154
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ ++ Q + A+ L+ ++ S N+ T+ L A S A G
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHG 231
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H+HV++ + +QNSL+ Y ++ A +IFN++ V++W ++ G SK
Sbjct: 232 KQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKH 291
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLG 183
G E + +F + VKP++ T ++VLS CS G G
Sbjct: 292 GKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKG 333
>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
Length = 641
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLLK L++ + + ++ M +++T ALKAC G IH V K
Sbjct: 10 NTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVKK 69
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L D+++ +SL++ Y+ + A ++F+ + PD+VTW++++SG K G +A++
Sbjct: 70 DVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVE 129
Query: 154 MF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F DV P+ TL++++SAC+ L + +LG+ +H +R N++ L N++L+
Sbjct: 130 FFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLN 187
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q+ A+ ++N M++ + N T L+AC+ AH ++G + H I+
Sbjct: 214 STVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIR 273
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + +L+ Y+ A+ +F+ + DVV+W +ISG + G +I+
Sbjct: 274 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEE 333
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + + +P+A +V VL +CS LG + K H++ ++
Sbjct: 334 FSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIK 375
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 94/187 (50%), Gaps = 6/187 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
++ +P I+ ++++ ++ +P A+ + +M+ + + T + AC+ +
Sbjct: 102 ELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSR 161
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H VI+ G +D+ + NSLL+ Y + A +F + DV++W+T+I+
Sbjct: 162 LGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYV 221
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G EA+ +F + +PN T++ VL AC++ + G+ H ++R E +
Sbjct: 222 QNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVK 281
Query: 201 LDNAVLD 207
+ A++D
Sbjct: 282 VSTALVD 288
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ L +CS ++ H++VIKYG + FI SL+ Y + +A ++FN +
Sbjct: 352 KVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 411
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
D V WT++I+G G +A++ F + +VKPN T +S+LSACS G
Sbjct: 412 DTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAG 463
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ TQ+ ++AI ++ +M + YTF L AC A Q+G ++HA++I+
Sbjct: 245 SMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT 304
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ +IF+ ++L+ Y K+I SA +F + +VV+WT ++ G + G+ +EA+ F
Sbjct: 305 DYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTF 364
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ ++P+ TL SV+S+C++L S + G HA +L + + I + NA++
Sbjct: 365 SDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALV 418
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++ M + +T + +C+ + ++G + HA + G + I
Sbjct: 353 QNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFIT 412
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ N+L+ Y I +H++FN + F D VTWT ++SG ++ G E I +F +
Sbjct: 413 VSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHG 472
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+KP+ T + VLSACS G + G I +NE+ I+
Sbjct: 473 LKPDKVTFIGVLSACSRAGLVEKGNQIFESM---INEHGIV 510
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 36/194 (18%)
Query: 50 AIPLYNKMLNCPSSYN--HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++ YN ML S+N TF+ L S + G +IH HV+K+G + +F+ + L
Sbjct: 125 SVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPL 184
Query: 108 LHFYVTVKDIFSAHQIF------NSVVFP-------------------------DVVTWT 136
+ Y + I A ++F N V++ D ++WT
Sbjct: 185 VDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWT 244
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
++I+G ++ G ++AID+F + +++ + T SVL+AC + + + GK +HA+ +R
Sbjct: 245 SMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT 304
Query: 194 LNENNIILDNAVLD 207
++NI + +A++D
Sbjct: 305 DYKDNIFVASALVD 318
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
NHY LK C H K +H+H+IK + F+ N+L+ Y + I A ++F
Sbjct: 10 NHYC--ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVF 67
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-----NTLVSVLSAC 174
+ + P++ +W TI+S SK G E +F D P N+L+S + C
Sbjct: 68 DQMPHPNLYSWNTILSAYSKLGRVSEMEYLF---DAMPRRDGVSWNSLISGYAGC 119
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 6/187 (3%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P P N+L++ + S PQ A+ L+ +L N +T LKACS A A +
Sbjct: 66 RVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEH 125
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLS 143
L H IK G++ +F+ N+LLH + + + ++F + +VV+W T+I G +
Sbjct: 126 ALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCA 185
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G EA +F + V + T VS+L CS G+ ++G+ +H H L + + ++I
Sbjct: 186 QAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLI 245
Query: 201 LDNAVLD 207
L NA++D
Sbjct: 246 LGNALVD 252
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ A L+ +M + +TF L CS + G +H H++
Sbjct: 178 NTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLA 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L+ Y D++ AH+ F+ + +VV+WT+++ L+K G A D
Sbjct: 238 SGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDW 297
Query: 155 F----------------C------------------GIDVKPNANTLVSVLSACSSLGSR 180
F C + + P+ TL VLS G
Sbjct: 298 FEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDL 357
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ IH + + ++ + + N+++D
Sbjct: 358 ASGRMIHCYIQDSFSDPGVTVLNSLID 384
Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +I+ N ++ Q + LYN+M + + + T L
Sbjct: 300 QMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLAS 359
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH ++ + + NSL+ Y + ++ +F + + ++W II L+
Sbjct: 360 GRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAM 419
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G +EA+ F + P+ T V +LSACS G
Sbjct: 420 HGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGG 456
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 107/210 (50%), Gaps = 11/210 (5%)
Query: 5 GLKSLKPTLSFKQ--LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
L SL +SF NQI A P NT+++ +S P A+ L+++M S
Sbjct: 77 ALVSLSAPMSFAAQIFNQIQA-----PNIFTWNTMIRGFAESENPSPAVELFSQMHAASS 131
Query: 63 SY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+ +TF KA + G IH+ V++ G F+QNSL+H Y + + SA+
Sbjct: 132 ILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAY 191
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
Q+F + + D V W ++I+G + G EA+ ++ + V+P+ T+VS+LSAC LG
Sbjct: 192 QVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELG 251
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG+ +H + ++ N NA+LD
Sbjct: 252 ALALGERVHMYMVKVGLVQNQHASNALLDL 281
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + P A+ LY +M + + +T L AC A G +H +++K
Sbjct: 206 NSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK 265
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N+LL Y + A ++F+ + VV+WT++I GL+ G EA+ +
Sbjct: 266 VGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKL 325
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ +KP+ T V VL ACS G
Sbjct: 326 FGELERQGLKPSEITFVGVLYACSHCG 352
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 37/218 (16%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P ++ N ++ + P LY +M + S N Y+FT AC+
Sbjct: 41 QIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYP 100
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD------------- 131
G +H+H K G D+F +LL Y + + SA Q+F+ + D
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 132 ------------------VVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVS 169
V++WT +ISG ++ G + +A++MF G++ KPN ++ S
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VL ACS LG+ +GK I A++ N N + NAVL+
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLE 258
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA+ ++ G H F+ LL + D+ A +F+ + P V + I S G
Sbjct: 6 QIHAYSLRNGLDHTKFLIEKLLQ----LPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIG 61
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++C + PN + + AC+SL + G+ +H+H ++ +++
Sbjct: 62 HPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMT 121
Query: 204 AVLD 207
A+LD
Sbjct: 122 ALLD 125
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 36/242 (14%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLN 59
F + L S S+ ++ + ++IP P I N++++ ++ P ++ ++ KML
Sbjct: 39 FASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLR 98
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
+H T+ KA + + L +H + K G D FI NSL+H Y + DI S
Sbjct: 99 FGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGS 158
Query: 120 A-------------------------------HQIFNSVVFPDVVTWTTIISGLSKCGFH 148
A HQ+F S+ DVV+W+++I G K G +
Sbjct: 159 ARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEY 218
Query: 149 KEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
A+ +F + V K N T+VSVL AC+ LG+ + G+ +H + + N ++L ++
Sbjct: 219 GVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSL 278
Query: 206 LD 207
+D
Sbjct: 279 MD 280
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
L+ H +P +++ +++ + A+ ++ +M N T L
Sbjct: 186 DLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLC 245
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DV 132
AC+ A + G +H +++ + ++ SL+ Y I A +F V DV
Sbjct: 246 ACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDV 305
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLG 178
+ W TII GL+ G E++++F + V P+ T + + SAC+ G
Sbjct: 306 LMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACAHGG 354
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 100/179 (55%), Gaps = 6/179 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSY--NHYTFTQALKACSLAHAHQKGLEIHAH 91
N L+ +++ + A+ +Y M++ P + TF+ AL ACS+ +G EI A
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEAR 188
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ G+ D +QN+L++ Y + SA ++F+ + DV+ W T+ISG +K G +A
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+++F + D KPN T + +L+AC++L + G+AIH + E+++++ N +L+
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLN 307
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + A+ L+ +M N TF L AC+ ++G IH V +
Sbjct: 233 NTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE 292
Query: 95 YGHLHDIFIQNSLLHFYVTVKD-IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+G+ D+ I N LL+ Y + A Q+F + DV+TW +I + G K+A+D
Sbjct: 293 HGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALD 352
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + +V PN TL +VLSAC+ LG+++ GKA+HA + +++L+N++++
Sbjct: 353 IFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMN 409
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 7/146 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
F A+ CS + ++G +HA +++ L DI + +L+ Y +D+ A + F+ +
Sbjct: 61 FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRK 181
+VTW +I+G S+ G H+ A+ ++ + +KP+A T S L ACS +G
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ I A ++ + ++ I+ NA+++
Sbjct: 181 QGREIEARTVASGYASDSIVQNALIN 206
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q ++A+ ++ +M + N T + L AC++ A ++G +HA +
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS 394
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ ++NSL++ Y + +F ++ +V+W+T+I+ ++ G + ++
Sbjct: 395 GRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEH 454
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
F + + + T+VS LSACS G K G
Sbjct: 455 FWELLQEGLAADDVTMVSTLSACSHGGMLKEG 486
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTL 167
Y + A +F+++ P+ V+WT I++ ++ G ++EA+ + + ++P+
Sbjct: 2 YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVL 206
V + CSS K G+ +HA L L E +IIL A++
Sbjct: 62 VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALI 101
>gi|225441828|ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 662
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
Query: 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL 98
+L P A+ ++ +M+ S + A+ AC + + Q+G +H K G
Sbjct: 167 RLYIMEDKPGLAVDMFKQMVESKSEIDPLALVTAIVACGMLKSLQEGRYVHEIAKKCGLE 226
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
D+ + NSLL Y+ I A +F+ + DV++WT I G K G E + +F +
Sbjct: 227 ADVLVSNSLLKMYIDCGSIKDARAVFDRMPSKDVISWTEIFRGYVKNGGFNEGLKLFRQM 286
Query: 159 D---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VKP++ + S+L AC + K GK IHA+ LRN + N+ + NAVLD
Sbjct: 287 SMEGVKPDSLAISSILPACGRGAAHKQGKEIHAYLLRNGIDLNVTVQNAVLD 338
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC AH++G EIHA++++ G ++ +QN++L YV I SA +IF + D
Sbjct: 302 LPACGRGAAHKQGKEIHAYLLRNGIDLNVTVQNAVLDMYVKSGFIESAAKIFAGMKDRDA 361
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSS 176
++WT +I G S G + +D+F ++ V+ + + L AC++
Sbjct: 362 ISWTVMILGYSLHGQGELGVDLFRKMEKNSSVEIDQIAYAAALHACTT 409
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/169 (30%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
TQ+ + AI L+ +M + YTF L AC A Q+G ++HA++I+ + +
Sbjct: 249 FTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDN 308
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
IF+ ++L+ Y K I SA +F + +VV+WT ++ G + G+ +EA+ +FC +
Sbjct: 309 IFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQN 368
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++P+ TL SV+S+C++L S + G H +L + + I + NA++
Sbjct: 369 NGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALV 417
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 35/193 (18%)
Query: 50 AIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
++ YN ML N P + N + L S GL++H HV+K+G +F+ + L+
Sbjct: 125 SVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLV 184
Query: 109 HFYVTVKDIFSAHQIF------NSVVF-------------------------PDVVTWTT 137
Y +F A Q F N V++ D ++WT
Sbjct: 185 DMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTA 244
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+I+G ++ G +EAID+F + +++ + T SVL+AC + + + GK +HA+ +R
Sbjct: 245 MIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD 304
Query: 195 NENNIILDNAVLD 207
++NI + +A++D
Sbjct: 305 YQDNIFVGSALVD 317
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++ M N + +T + +C+ + ++G + H + G + I
Sbjct: 352 QNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFIT 411
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ N+L+ Y I +H++F+ + + D V+WT ++SG ++ G E + +F +
Sbjct: 412 VSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHG 471
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAI 186
KP+ T + VLSACS G + G I
Sbjct: 472 FKPDKVTFIGVLSACSRAGLVQKGNQI 498
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 55 NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114
+K N S NHY C L + +IH H+IK +IF+ N+L+ Y
Sbjct: 6 SKQFNSMSLSNHY--------CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKF 57
Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
I A ++F+ + ++ +W T++S SK
Sbjct: 58 DRITYARRVFDQMPQRNLYSWNTLLSSYSK 87
Score = 37.4 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q + L+ ML + TF L ACS A QKG +I +IK + I
Sbjct: 453 QFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRI--IP 510
Query: 103 IQNSLLHFYVTVKDIFS-------AHQIFNSVVF-PDVVTWTTIISGLSKCGFHK 149
I++ Y + D+FS A + N + F PD + W ++ LS C FH+
Sbjct: 511 IEDH----YTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASL---LSSCRFHR 558
>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 871
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 5/171 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ PQ A+ L+ N T L AC+ G +H V+KYG L D
Sbjct: 318 TQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYG-LDDT 376
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK 161
++NSL+ Y I AH +F + V DVV+W ++ISG ++ G EA+D+F + ++
Sbjct: 377 SLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRME 436
Query: 162 ---PNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLDF 208
P+A T+V VLSAC+S+G+ ++G ++H +L+ L ++I + A+L+F
Sbjct: 437 SFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNF 487
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ QS + A+ L+N+M + T L AC+ AHQ GL +H +K
Sbjct: 411 NSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALK 470
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI- 152
YG + I++ +LL+FY D SA +F+ + + VTW +I G CG + +
Sbjct: 471 YGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGG---CGMQGDGVG 527
Query: 153 ------DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
DM ++ PN ++L+ACS G + G I + LN
Sbjct: 528 SLALFRDML-KEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELN 575
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 11/172 (6%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP +++ +++ Q+ + + L+N+M N +T + AC+ +
Sbjct: 194 EIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQ 253
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP------DVVTWTTI 138
G +H +VIK G + ++ SLL+ YV DI A +F+ D+V WT +
Sbjct: 254 GKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAM 313
Query: 139 ISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
I G ++ G+ + A+++F + PN+ TL S+LSAC+ L + +GK +H
Sbjct: 314 IVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLH 365
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 7/200 (3%)
Query: 14 SFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT-FT 70
SF L ++P P H +++ + + + YN S+N F+
Sbjct: 80 SFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLGSFNDLVVFS 139
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
LK S ++H +++K + D F+ SL+ Y + A ++F+ +
Sbjct: 140 ILLKTASQLRDIVLTTKLHCNILK-SNAADSFVLTSLVDAYSKCGKLRDARKVFDEIPDR 198
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
VV+WT++I + +E + +F + + N T+ S+++AC+ LG GK +H
Sbjct: 199 SVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVH 258
Query: 188 AHSLRNLNENNIILDNAVLD 207
+ ++N E N L ++L+
Sbjct: 259 GYVIKNGIEINSYLATSLLN 278
>gi|255557445|ref|XP_002519753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541170|gb|EEF42726.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 562
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 99/185 (53%), Gaps = 5/185 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P ++++ +++ L Q+ + A+ L+ KM++ T+ L AC+ A
Sbjct: 257 KMPCRNVISWTSMIGGLDQNGKSEEALILFGKMMDSGVKPTSTTYACVLTACANAMDFNM 316
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+++H V K G+ D FI SL+ FY K + +AHQ+FN + +VV WT +++G
Sbjct: 317 GVQVHGRVSKLGYKSDEFISASLITFYSNCKQVKNAHQVFNETLSKNVVIWTALLTGCEL 376
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
H++A+ +F + V PN +T +S ++C L + GK IH + + E ++ +
Sbjct: 377 NSKHEDALRVFSDMIKMGVFPNQSTFISAFNSCRGLEALDRGKEIHTVTAKLGLETDVFV 436
Query: 202 DNAVL 206
N+++
Sbjct: 437 GNSLV 441
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I LL +S ++A+ +++ M+ N TF A +C A +G EIH
Sbjct: 366 IWTALLTGCELNSKHEDALRVFSDMIKMGVFPNQSTFISAFNSCRGLEALDRGKEIHTVT 425
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K G D+F+ NSL+ Y ++ A +F + + V+W +II G S+ G A+
Sbjct: 426 AKLGLETDVFVGNSLVVMYNECGNVNDAVAVFKKIKEKNDVSWNSIIVGSSQHGHGIWAL 485
Query: 153 DMF------CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
F C V P+ TL +LSACS G + G+
Sbjct: 486 IFFNQMIRTC---VDPDEITLTGLLSACSHSGMLQKGR 520
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L L ++L+Q KIP P ++ ++ +S +A+ L+++M + +
Sbjct: 115 LSDLLKNQKLDQARFLFAKIPSPEAYLCTLMINGYARSGRLNDALMLFDRM----TVRDI 170
Query: 67 YTFTQALKAC----SLAHAHQKGLEIHAH-----------VIKYGHL------------H 99
++ +K C L A + E+ +K+G +
Sbjct: 171 ISWNSMIKGCLDCGDLGMARRLFDEMPERNVVSWTTMVNGYLKFGRVEIAERFFWDMPVR 230
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
D+ N+++ Y + I +F + +V++WT++I GL + G +EA+ +F +
Sbjct: 231 DVAAWNAMIFGYCGNRRIADGLNLFEKMPCRNVISWTSMIGGLDQNGKSEEALILFGKMM 290
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
VKP + T VL+AC++ +G +H
Sbjct: 291 DSGVKPTSTTYACVLTACANAMDFNMGVQVHGR 323
>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 98/185 (52%), Gaps = 5/185 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
L F +++ ++P+ ++++ T++ L Q+ A+ L+ ML C TFT
Sbjct: 170 LQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFT 229
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ AC+ A A G ++H +IK G L++ ++ SL+ Y K + ++F +V
Sbjct: 230 CVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHE 289
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
V WT ++SG S H++A+++F + + PN +T S L++CS+LG+ GK IH
Sbjct: 290 KVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIH 349
Query: 188 AHSLR 192
+++
Sbjct: 350 GVAVK 354
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ ++++M+ N TF L +CS G EIH +K G F+ NSL
Sbjct: 308 EDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSL 367
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNA 164
+ Y ++ A +F + +V+W +II G ++ G K A +F ++ +P+
Sbjct: 368 VVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDE 427
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
T +LSACS G + G+ + + LN
Sbjct: 428 ITFTGLLSACSHCGFLQKGRKLFYYISSGLN 458
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ DI N+++H Y+ + A ++F + +V++WTT+I GL + EA+++F
Sbjct: 156 VKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKN 215
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ +K + T V++AC++ + +G +H +++
Sbjct: 216 MLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKS 254
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
L D+ NS++ V DI +A ++F+ + VV+WT +++G + G +A +FC
Sbjct: 94 LRDVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQ 153
Query: 158 IDVK 161
+ VK
Sbjct: 154 MPVK 157
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 41/235 (17%)
Query: 12 TLSFKQLNQIHAQIIK-IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHY 67
T SF QI + K P+ + N+ LK L + +P +AI L+ ++ CP ++
Sbjct: 73 TPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTF--- 129
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + L+AC G +H V K G ++++QN ++H Y + ++ A +F +
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM 189
Query: 128 VFPDVVT-------------------------------WTTIISGLSKCGFHKEAIDMFC 156
DVVT WT++I+G +CG KEAI +F
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ VK N T+V+VL+AC+ LG+ LG IH +S R+ + N+ + N ++D
Sbjct: 250 KMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDM 304
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 5/172 (2%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ +++ Q + AI L+ KM N T L AC+ A
Sbjct: 219 RMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDL 278
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ IH + ++G ++ I N+L+ YV + A ++F + VV+W+ +I GL+
Sbjct: 279 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 338
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G +EA+ +F + ++PN T + +L ACS +G G+ A R+
Sbjct: 339 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 390
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + P A+ +Y++M + + ++AC+L + G +H ++
Sbjct: 181 STMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLR 240
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D+ I SL+ Y A Q+F + + + V+W +ISG ++ G EA+D+
Sbjct: 241 HGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDL 300
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P++ LVS L AC+ +G KLGK+IH LR L E IL AVLD
Sbjct: 301 FREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRL-EFQCILGTAVLD 355
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 89/178 (50%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
N LL +++ +P A+ ++ + PSS + TFT AL AC+ +
Sbjct: 81 NALLAARSRAGSPGAALRVFRAL---PSSARPDSTTFTLALTACARLGDLDAAEAVRVRA 137
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G+ D+F+ ++LLH Y + A ++F+ + D V W+T+++G G EA+
Sbjct: 138 FAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEAL 197
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
M+ + V + +V V+ AC+ G+ ++G ++H LR+ ++++ +++D
Sbjct: 198 GMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVD 255
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q+ A+ L+ +M + AL AC+ + G IH +++
Sbjct: 282 NALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR 341
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
I + ++L Y + SA ++FN + D+V W +I+ G +A+ +
Sbjct: 342 RLEFQCI-LGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALAL 400
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ +KP+ T S+LSA S G + GK
Sbjct: 401 FQELNETGIKPDHATFASLLSALSHSGLVEEGK 433
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 10/189 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQS-STPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAH 82
+IP P N+L++ L + S P A+ +Y +ML S N +T ALKAC+ A
Sbjct: 134 QIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAP 191
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISG 141
+G ++HA ++ G ++Q LL+ Y + + A +F+ + ++V W+ ++SG
Sbjct: 192 GEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSG 251
Query: 142 LSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S+ G EA+ +F + V+P+ T+VSV+SAC+ G+ LGK +HA+ R +
Sbjct: 252 YSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVD 311
Query: 199 IILDNAVLD 207
+ L A++D
Sbjct: 312 LELSTALID 320
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + T + AC+ A A G +HA++ + G D+ + +L+
Sbjct: 261 ALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALID 320
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANT 166
Y I A +F+++V D W+ +I G + G ++A+ +F + V+PN T
Sbjct: 321 MYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVT 380
Query: 167 LVSVLSACSSLG 178
+ VLSAC+ G
Sbjct: 381 FIGVLSACAHSG 392
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 41/231 (17%)
Query: 19 NQIHAQII--KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQA 72
N HAQ+I ++P P++ N ++K ++A+ +N+ L+ PS+ N Y +T
Sbjct: 60 NLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSL 119
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
+KAC+ A GL++HA VIK G ++I + SL+ Y ++ SA Q+F+ + DV
Sbjct: 120 IKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDV 179
Query: 133 VTWTTIISGLSKCGF-------------------------------HKEAIDMFCGID-- 159
V+W T++SG CG + +AI++F +
Sbjct: 180 VSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKV 239
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V P+ TLVSVLSAC+ +G+ G+ I N+ L NA++D
Sbjct: 240 GGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDM 290
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q+ +AI ++++M + T L AC+ A G I V
Sbjct: 214 NAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVG 273
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G ++++ N+L+ Y + A +IF+ + DV++W+T+I G G EA
Sbjct: 274 WRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFG 333
Query: 154 MF-----CGIDVKPNANTLVSVLSACSSLG 178
+ CG VKPN T + +LSACS G
Sbjct: 334 YYSKMLECG--VKPNEVTFMGLLSACSHAG 361
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI-KYGHLHDIFIQNS 106
A Y+KML C N TF L ACS A KG+E+ + +I +Y + +
Sbjct: 329 DEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGC 388
Query: 107 LLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKE 150
++ + A + NS+ + P+V+ W ++ G C HK+
Sbjct: 389 VIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGG---CRIHKD 430
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG--HLHDIFIQNSLLHFYVTVKDIFSA 120
S+NH T L + ++ L+I A +I LH I L+ +++ A
Sbjct: 5 SHNHLKLTTLLLNYAEHFQTKQLLQIQAQLITNPPLSLHPNLIAVKLIGACAANANLYHA 64
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLV--SVLSACS 175
IF + P+V +W II CG + A++ F + PN N + S++ AC+
Sbjct: 65 QLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACA 124
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L + G +HA +++ +NNI L +++D
Sbjct: 125 GLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDM 157
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ + S +P AI LY M C S N YTF LKAC +G E+
Sbjct: 70 PNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQEL 129
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+ ++K G + + N L+ Y + A +F+ + PD +W+T++SG ++ G
Sbjct: 130 HSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQA 189
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+ +F + +V +A TL SV+ C LG+ LGK +H++ + + +++L A+
Sbjct: 190 VEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTAL 249
Query: 206 L 206
+
Sbjct: 250 V 250
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 3/188 (1%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP 61
VNGL L + + P +T++ Q+ A+ L+ +M
Sbjct: 144 LVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAEN 203
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
S + +T + C A G +H+++ K G D+ + +L+ Y + +A
Sbjct: 204 VSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNAL 263
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
++F + DV W+T+I+G + G ++A+ +F + PN T SVLSACS G
Sbjct: 264 KVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSG 323
Query: 179 SRKLGKAI 186
+ G I
Sbjct: 324 LVEKGHQI 331
Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHF-YVTVKD-IFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
I AH+++ D F+ + L+ VT+ + AH+IF+ P++ W TII G S
Sbjct: 26 IQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSIS 85
Query: 146 GFHKEAI----DMF-CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
AI DMF CGI PN+ T VL AC L G+ +H+ ++
Sbjct: 86 DSPITAIALYRDMFLCGIS--PNSYTFGFVLKACCKLLRLCEGQELHSQIVK 135
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 37/219 (16%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P ++ N ++ + P LY +M + S N Y+FT AC+
Sbjct: 41 QIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYP 100
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD------------- 131
G +H+H K G D+F +LL Y + + SA Q+F+ + D
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 132 ------------------VVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVS 169
V++WT +ISG ++ G + +A++MF G++ KPN ++ S
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
VL ACS LG+ +GK I A++ N N + NAVL+
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLEL 259
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA+ ++ G H F+ LL + D+ A +F+ + P V + I S G
Sbjct: 6 QIHAYSLRNGLDHTKFLIEKLLQ----LPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIG 61
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++C + PN + + AC+SL + G+ +H+H ++ +++
Sbjct: 62 HPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMT 121
Query: 204 AVLD 207
A+LD
Sbjct: 122 ALLD 125
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL+ TQ+ +P AI L+ ML + L AC+ A Q G IH ++ K+
Sbjct: 231 TLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKH 290
Query: 96 GH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ + + NSL+ Y DI A Q+F ++ ++TWTT+ISGL+ GF KEA+D
Sbjct: 291 NNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALD 350
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
+F ++ VKPN TL++VLSACS +G +LG+ I
Sbjct: 351 VFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNI 386
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 40/182 (21%)
Query: 44 SSTPQNAIPLYN--KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
SS P AI L+N ++L P + Y+F LKA A G +IH I G
Sbjct: 105 SSNPTRAISLFNAIRLLGMPP--DSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHP 162
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFP------------------------------- 130
+ SL+ Y + + SA ++F+ F
Sbjct: 163 SVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEK 222
Query: 131 --DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
DVV+WTT+ISG ++ EAI +F + +V+P+ +++VLSAC+ LG+ +LG+
Sbjct: 223 DRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEW 282
Query: 186 IH 187
IH
Sbjct: 283 IH 284
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 110/203 (54%), Gaps = 7/203 (3%)
Query: 11 PTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT 68
PT++ ++ H KIPQP I+ NT+ + + P AI L +++L + YT
Sbjct: 80 PTIA--SMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYT 137
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
F+ LKAC+ A ++G ++H +K G ++++ +L++ Y D+ +A ++F+ +
Sbjct: 138 FSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIG 197
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKA 185
P VV + II+ ++ EA+ +F + +KP T++ LS+C+ LG+ LG+
Sbjct: 198 EPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRW 257
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH + +N + + ++ A++D
Sbjct: 258 IHEYVKKNGFDQYVKVNTALIDM 280
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KI +P ++ N ++ ++S P A+ L+ ++ T AL +C+L A
Sbjct: 195 KIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDL 254
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH +V K G + + +L+ Y + A +F + D W+ +I +
Sbjct: 255 GRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYAT 314
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G +AI M + V+P+ T + +L ACS G
Sbjct: 315 HGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTG 351
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 92.8 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ + + ++ L+++M + Y + L ACS Q G +IH HV++
Sbjct: 112 TIITACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRR 171
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ N L+ FY + SA ++F+ + +V++WT +I+G + F +EA+ +F
Sbjct: 172 GIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGYMQNSFDREAVKLF 231
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +P+ S+L++C SL + +LG+ +HA+S++ E++I L N ++D
Sbjct: 232 IEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLID 286
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+S + A+ L+ +M + + T L +C A + G ++HA+ IK DIF
Sbjct: 220 QNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIF 279
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
+QN L+ Y + A ++F+ + +VV++ +I G S EA+++F +
Sbjct: 280 LQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAMNLFREMRHGM 339
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ P+ T VS+L A ++L + +LGK IHA + I +A++DF
Sbjct: 340 LSPSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDF 388
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 60 CPSSYNHYTFTQALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
C + N Y + AC + + K ++H +K G ++++ SL+ Y +I
Sbjct: 36 CNENPNEYILASVISACVQVGGSIDK--QMHGFAVKSGFDRNVYVGTSLVDLYAKGGNID 93
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
A +F+ ++ VTWTTII+ K G + ++ +F + +V P+ L SVL ACS
Sbjct: 94 EARLVFDGLLEKSAVTWTTIITACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACS 153
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L + GK IH H LR E ++ N ++DF
Sbjct: 154 QLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDF 186
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ + A+ L+ +M + S + TF L A + A + G +IHA + K
Sbjct: 313 NALIEGYSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGASATLSALELGKQIHALITK 372
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G +IF ++L+ FY + A +F+ + D+V W ++ G ++ ++EA+ +
Sbjct: 373 FGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGYTQQLENEEALKL 432
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + + KPN T ++ +A S+L S + G+ H H ++ +++ N+++D
Sbjct: 433 YTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHIIKTGLDSHPFTTNSLID 488
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N +L TQ + A+ LY ++ N TF A S + Q G + H H+
Sbjct: 412 VWNAMLFGYTQQLENEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHI 471
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--------------VFPDVVTWTTI 138
IK G F NSL+ Y + A + F V + P + +
Sbjct: 472 IKTGLDSHPFTTNSLIDMYAKCGSLEDARKAFGHVKDGLHYFESMPKFSIKPGTEHYACV 531
Query: 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+S L + G EA + + +P A S+LSAC G+ +LGK
Sbjct: 532 VSLLGRSGKLYEAKEFIEKMPTEPEAVVWRSLLSACRVSGNVELGK 577
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVK------PNANTLVSVLSACSSLGSRKLGK 184
++++W++++S SK GF +EA+ +F +D K PN L SV+SAC +G + K
Sbjct: 5 NLISWSSVVSMYSKRGFSEEALLVF--LDFKRCCNENPNEYILASVISACVQVGG-SIDK 61
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
+H ++++ + N+ + +++D
Sbjct: 62 QMHGFAVKSGFDRNVYVGTSLVDL 85
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 82/126 (65%), Gaps = 8/126 (6%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+ VI+ G I++QNSLLH Y D+ SA+++F+ + D+V W ++I+G ++
Sbjct: 7 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-----RNLNE 196
G +EA+ ++ ++ +KP+ T+VS+LSAC+ +G+ LGK +H + + RNL+
Sbjct: 67 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 126
Query: 197 NNIILD 202
+N++LD
Sbjct: 127 SNVLLD 132
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N+++ ++ P+ A+ LY +M + + +T L AC+ A
Sbjct: 48 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 107
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++IK G ++ N LL Y + A +F+ +V + V+WT++I GL+
Sbjct: 108 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 167
Query: 145 CGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLG 183
GF KEAI++F ++ + P T V +L ACS G K G
Sbjct: 168 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 210
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 92.8 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 7/201 (3%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTF 69
SF L +IPQP+ NTL++ P +I + M++ S N YTF
Sbjct: 77 SFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTF 136
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+KA + + G +H IK D+F+ NSL+H Y + D+ SA ++F ++
Sbjct: 137 PFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 196
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
DVV+W ++I+G + G +A+++F + DVK + T+V VLSAC+ + + G+ +
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRV 256
Query: 187 HAHSLRNLNENNIILDNAVLD 207
++ N N+ L NA+LD
Sbjct: 257 CSYIEENRVNVNLTLANAMLD 277
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQK 84
+P+ I+ N L+ Q+ P A+ +++++ L N T L AC+ A +
Sbjct: 326 MPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALEL 385
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+++ K G + ++ ++L+H Y D+ A ++FNSV DV W+ +I GL+
Sbjct: 386 GRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAM 445
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EA+DMF + +VKPN T +V ACS G
Sbjct: 446 HGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 482
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 35/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-- 92
N+++ Q +P A+ L+ KM + +H T L AC+ + G + +++
Sbjct: 203 NSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEE 262
Query: 93 -----------------IKYGHLHDI------------FIQNSLLHFYVTVKDIFSAHQI 123
K G + D ++L Y +D +A ++
Sbjct: 263 NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREV 322
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGS 179
N++ D+V W +IS + G EA+ +F + ++K N TLVS LSAC+ +G+
Sbjct: 323 LNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGA 382
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
+LG+ IH++ +N + N + +A++
Sbjct: 383 LELGRWIHSYIKKNGIKMNFYVTSALI 409
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ TL+ Q+S P+ A+ ++ ML S +++T + AL ACS + G + HA +
Sbjct: 48 VWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFI 107
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IKY HD I N+L Y + S+ + F DV++WTTIIS G +
Sbjct: 108 IKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGL 167
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + +V+PN TL SVLS CS++ S LG +H+ S + +E+N+ + N+++
Sbjct: 168 RLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLV 224
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+ +ML N +T T L CS + G+++H+ K GH ++ I NSL++ Y+
Sbjct: 169 LFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYL 228
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISG------LSKCGFH-----KEAIDMFCGID-- 159
I A +FN + + +++TW +I+G L+K F EA+ M+ ++
Sbjct: 229 KCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRS 288
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
KP+ TL S+L+ CS L + + G+ IHA ++++ +++++ A++D
Sbjct: 289 GRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVD 337
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
+ T A+ +Y K+ + +T + L CS A ++G +IHA IK G L D
Sbjct: 269 FSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSD 328
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
+ + +L+ Y I A + F + +++WT++I+ ++ G + A+ +F + +
Sbjct: 329 VVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRL 388
Query: 161 ---KPNANTLVSVLSACSSLG 178
+PN T V VL+ACS G
Sbjct: 389 AGFRPNQITFVGVLAACSHAG 409
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HAHVIK G + F+ + L++ Y + +A ++F+++ +VV WTT+++G +
Sbjct: 2 VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+ A+++F + P+ TL L+ACSSL S LGK HA ++ ++ + NA
Sbjct: 62 PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121
Query: 205 V 205
+
Sbjct: 122 L 122
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 6/179 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSY--NHYTFTQALKACSLAHAHQKGLEIHAH 91
N L+ +++ + A+ +Y M++ P + TF+ AL AC++ +G EI A
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEAR 188
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ G+ D +QN+L++ Y + SA ++F+ + DV+ W T+ISG +K G +A
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+++F + D KPN T + +L+AC++L + G+AIH + E+++++ N +L+
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLN 307
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + A+ L+ +M N TF L AC+ ++G IH V +
Sbjct: 233 NTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRE 292
Query: 95 YGHLHDIFIQNSLLHFYVTVKD-IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G+ D+ I N LL+ Y + A Q+F + DV+TW +I + G K+A+D
Sbjct: 293 DGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALD 352
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + +V PN TL +VLSAC+ LG+++ GKA+HA + +++L+N++++
Sbjct: 353 IFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMN 409
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 7/146 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
F A+ CS + ++G +HA +++ L DI + +L+ Y +D+ A + F+ +
Sbjct: 61 FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRK 181
+VTW +I+G S+ G H+ A+ ++ + +KP+A T S L AC+ +G
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ I A ++ + ++ I+ NA+++
Sbjct: 181 QGREIEARTVASGYASDSIVQNALIN 206
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q ++A+ ++ +M + N T + L AC++ A ++G +HA +
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS 394
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ ++NSL++ Y + +F ++ +V+W+T+I+ ++ G + ++
Sbjct: 395 GRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEH 454
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
F + + + T+VS LSACS G K G
Sbjct: 455 FWELLQEGLAADDVTMVSTLSACSHGGMLKEG 486
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTL 167
Y + A +F+++ P+ V+WT I++ ++ G ++EA+ + + ++P+
Sbjct: 2 YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVL 206
V + CSS K G+ +HA L L E +IIL A++
Sbjct: 62 VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALI 101
>gi|255544628|ref|XP_002513375.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547283|gb|EEF48778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 922
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 93/163 (57%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH-QKGLEIHAHVIKYGHLHDIFIQNS 106
+ +I L+N M + + F + AC + +G+++H ++K+G L D+F+ S
Sbjct: 296 RESIGLFNDMRDLGIKPTGFAFASLVTACDRSGCMLSEGIQVHDLIVKFGMLCDVFVGTS 355
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
LLHFY T F+A ++FN ++ +VV+WT ++ S G E ++++C + + N
Sbjct: 356 LLHFYGTYGLAFNARRVFNEMLDKNVVSWTALMVAYSDFGDPMEVMNIYCEMRCEGLSGN 415
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
ANTL +V+S+C+SL LG I H +++ N+ ++N+++
Sbjct: 416 ANTLATVISSCASLEDEFLGHQILGHVIKSGLGTNVSVENSLI 458
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P + +Y +M S N T + +C+ G +I HVIK G ++ ++NS
Sbjct: 397 PMEVMNIYCEMRCEGLSGNANTLATVISSCASLEDEFLGHQILGHVIKSGLGTNVSVENS 456
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPN 163
L+ + + A IF + D+++W ++IS + G +E++ F + N
Sbjct: 457 LISMFGSFGRAQEACYIFGGMNEHDIISWNSMISVYVQNGLFEESLRCFYWMQHVHNHIN 516
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ TL ++LS C S+ + K G+ IH+ ++ ++NI + N ++
Sbjct: 517 STTLSTLLSECGSVDNLKWGRGIHSLVIKFGMDSNICICNTLI 559
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 7/177 (3%)
Query: 22 HAQII--KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
HA ++ K+ + ++ N++L Q +A+ ++ ++ + N TFT AL ACS
Sbjct: 570 HADLVFQKMAERDLISWNSMLACYAQDGKSLDALKIFTRIFHMKKGANFVTFTSALAACS 629
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+G +HA VI G + + N+L+ Y A ++F + D VTW
Sbjct: 630 DPDFIAEGRILHALVILTGLHESLIVSNALVTLYAKSGTTIEAKKVFQMMSRRDEVTWNA 689
Query: 138 IISGLSKCGFHKEAIDMF--CGIDVKPNANTLVSVLSA-CSSLGSRKLGKAIHAHSL 191
+I G + EA+ F D+ + T+ +VL A + K G IHA+++
Sbjct: 690 LIGGHANNRESDEAVKAFKLMREDIPASYITIANVLGALLAPTDLLKHGMPIHAYTV 746
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + Q+ + ++ + M + + N T + L C + G IH+ VIK
Sbjct: 486 NSMISVYVQNGLFEESLRCFYWMQHVHNHINSTTLSTLLSECGSVDNLKWGRGIHSLVIK 545
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G +I I N+L+ Y A +F + D+++W ++++ ++ G +A+ +
Sbjct: 546 FGMDSNICICNTLIAMYSGAGKSEHADLVFQKMAERDLISWNSMLACYAQDGKSLDALKI 605
Query: 155 FCGI-DVKPNAN--TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F I +K AN T S L+ACS G+ +HA + ++I+ NA++
Sbjct: 606 FTRIFHMKKGANFVTFTSALAACSDPDFIAEGRILHALVILTGLHESLIVSNALV 660
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ IHA+ + G D ++QNSL+ Y D+ S++ IF+ ++ + V W T+++ +
Sbjct: 738 GMPIHAYTVMIGLESDQYVQNSLITMYAKCGDLNSSNCIFDGLINKNAVAWNTVMAANAY 797
Query: 145 CGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
G +E++ + G+D+ + + LSA ++L + G+ + + +++ +++
Sbjct: 798 HGQMEESLKLLVKMRHAGVDL--DQFSFSGCLSATATLAMLEEGQQLQSLAVKLGFDSDP 855
Query: 200 ILDNAVLD 207
+ NA++D
Sbjct: 856 FVTNALMD 863
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +HA IK +F N+L++ Y I A +F+ + + +W IIS
Sbjct: 232 GKALHALCIKGLANLGVFYNNTLINMYSKFGYICLARYVFDEMSEKNEASWNHIISAYLH 291
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
G ++E+I +F + +KP S+++AC G L + I H L
Sbjct: 292 AGLYRESIGLFNDMRDLGIKPTGFAFASLVTACDRSGC-MLSEGIQVHDL 340
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + ++ L KM + + ++F+ L A + ++G ++ + +K
Sbjct: 789 NTVMAANAYHGQMEESLKLLVKMRHAGVDLDQFSFSGCLSATATLAMLEEGQQLQSLAVK 848
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ N+L+ Y ++ +I + ++W T+IS ++ G + A +
Sbjct: 849 LGFDSDPFVTNALMDMYAKCGELDDVLRIIPQPLERSRLSWNTLISSFARHGNFERAKET 908
Query: 155 F-----CGI 158
F CG+
Sbjct: 909 FHEMLKCGV 917
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 101/186 (54%), Gaps = 5/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I IP I N ++K T++ + + A+ L+ ++ S +++T+ KA ++G
Sbjct: 92 IDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREG 151
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+++ V+K G D ++ NSL+ Y V + + Q+F + DVV+W +ISG KC
Sbjct: 152 EKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKC 211
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+++A+D+F + ++PN T+VS LSAC +L +LGK IH + L I +
Sbjct: 212 RRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLG-FTIKI 270
Query: 202 DNAVLD 207
NA++D
Sbjct: 271 GNALVD 276
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 42/216 (19%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
++PQ ++ N L+ + ++A+ ++ +M S N T L AC +
Sbjct: 192 EMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLE 251
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G EIH +V + I I N+L+ Y + A +IFN + V+ WT+++SG
Sbjct: 252 LGKEIHRYVREQLGF-TIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYV 310
Query: 144 KCG-----------------------------FHK--EAIDMFCGIDVK---PNANTLVS 169
CG F++ +A+ +F + +K P+ TLV+
Sbjct: 311 NCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVA 370
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+L+ C+ LG+ + GK IH + ++EN I++D V
Sbjct: 371 LLTGCAQLGTLEQGKWIHGY----IDENKIMIDAVV 402
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ L+ +M S + +T L C+ ++G IH ++ + + D + +L+
Sbjct: 348 DAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALI 407
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y I + +IFN + D +WT+II GL+ G +A+++F + VKP+
Sbjct: 408 EMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDI 467
Query: 166 TLVSVLSACSSLGSRKLGK 184
T + VLSACS G + G+
Sbjct: 468 TFIGVLSACSHGGLVEEGR 486
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IK P + NT+++ L S +I Y M N++TF +KAC+ Q G
Sbjct: 74 IKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLG 133
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ +H V+K G ++F+ SL+ Y I A ++ + + ++V+WT IISG
Sbjct: 134 IMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGV 193
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G ++EAID+F + ++P++ T+V VLSAC +G G+ I + N+ N+ +
Sbjct: 194 GKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVT 253
Query: 203 NAVLD 207
+++D
Sbjct: 254 TSLVD 258
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ +ML + +T Q L AC G I ++ + ++F+ SL
Sbjct: 197 REAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSL 256
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ A +F+ + D+V+W+ +I G + G K+A+D+F + +KP+
Sbjct: 257 VDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGLKPDH 316
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIILDNAVLD 207
+V L AC+ LG+ +LG +L + E N +L A++D
Sbjct: 317 YAMVGFLCACARLGALELGD--WGSNLMDRTEFFTNHVLGTALID 359
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P++A+ L+ KMLN +HY L AC+ A + G + + + + +
Sbjct: 297 PKDALDLFFKMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTA 356
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPN 163
L+ Y + A ++F + D W ISGL+ G K A +F ++ ++P+
Sbjct: 357 LIDMYAKCGSMAKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERFGIQPD 416
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILDN 203
NT V +L C+ G G+ + HS+ R+L +++I L N
Sbjct: 417 GNTFVGLLCGCTHAGLVDEGRK-YFHSMGRSLRQDHIFLFN 456
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 40 LLTQSSTPQ--NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ T +++P NA+ L N++L S+N +LK L H +HA +++ G
Sbjct: 3 IFTNTTSPSLINALNLKNRLLQ---SFN------SLK--QLKH-------VHAALLRLGF 44
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
++ + ++ D IFN + PDVV + T+I GL E+I+ +
Sbjct: 45 DQGSYLWSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYS 104
Query: 158 IDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
+ K PN T V+ AC+ L +LG +H
Sbjct: 105 MRKKGFLPNNFTFPFVIKACARLLDFQLGIMMH 137
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NTL++ S P A+ LY M +TF LKACS + Q +++
Sbjct: 91 PNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQV 150
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H HV+K+G ++ + N L+ Y D+ +A ++F+ V + WTT+ISG ++
Sbjct: 151 HTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCS 210
Query: 149 KEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+++F + V +PN TL SVLSAC+ G LG+ IH E +IL A+
Sbjct: 211 NEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTAL 270
Query: 206 L 206
+
Sbjct: 271 V 271
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I T++ Q+ A+ L+++M+ N T L AC+ + G IH +
Sbjct: 196 IWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFM 255
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G + + +L+H Y I A ++F+ + + TW +I GL+ G KEA+
Sbjct: 256 EEKGIEVGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEAL 315
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
D F ++ + PN T V VLSAC G +G+ I
Sbjct: 316 DRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKI 352
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IHA +I +HD + + LL F + D+ A ++FN+ P+ W T+I +
Sbjct: 46 QIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLIRAHAS 105
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
EA+ ++ +DV P +T +L ACS+ S + +H H L+
Sbjct: 106 SLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLK 156
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NTL++ S P A+ LY M +TF LKACS + Q +++
Sbjct: 89 PNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQV 148
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H HV+K+G ++ + N L+ Y D+ +A ++F+ V + WTT+ISG ++
Sbjct: 149 HTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCS 208
Query: 149 KEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+++F + V +PN TL SVLSAC+ G LG+ IH E +IL A+
Sbjct: 209 NEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTAL 268
Query: 206 L 206
+
Sbjct: 269 V 269
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I T++ Q+ A+ L+++M+ N T L AC+ + G IH +
Sbjct: 194 IWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFM 253
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G + + +L+H Y I A ++F+++ + TW +I GL+ G KEA+
Sbjct: 254 EEKGIEVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEAL 313
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
D F ++ + PN T V VLSAC G +G+ I
Sbjct: 314 DRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKI 350
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IHA +I +HD + + LL F + D+ A ++FN+ P+ W T+I +
Sbjct: 44 QIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLIRAHAS 103
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
EA+ ++ +DV P +T +L ACS+ S + +H H L+
Sbjct: 104 SLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLK 154
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+ + S P+ A+ L+ ML N +T +KAC+ A A L +
Sbjct: 8 PDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALAV 67
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K G + +F+ N+LLH Y + + + + F+ + +VV+W ++I G ++ G
Sbjct: 68 HGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDT 127
Query: 149 KEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+EA +F + + + TL S+L ACS G+ + G+ +H L + + ++IL A+
Sbjct: 128 REACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGAL 187
Query: 206 LDF 208
+D
Sbjct: 188 VDM 190
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q A+ LY +M + + + T L AC G +H ++
Sbjct: 247 NTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRD 306
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
H DI + NSLL Y + +A ++F + +VV+W II GL+ G +AI
Sbjct: 307 NIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITF 366
Query: 155 FCGI--DVKPNANTLVSVLSACSSLGSRKLGK 184
F + + P+ T V++LS+CS G + G+
Sbjct: 367 FRSMVRNTSPDGITFVALLSSCSHGGLLETGQ 398
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 34/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + A L+ +M + +T L ACS + G +H ++
Sbjct: 115 NSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLV 174
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK--------CG 146
G D+ + +L+ Y D+ A + F + VV+WT+++ +K C
Sbjct: 175 SGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCW 234
Query: 147 F-----------------------HKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSR 180
F + EA+D++ + P+ TLV VLSAC +G
Sbjct: 235 FDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDL 294
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
+GK +H + N++ +I L N++LD
Sbjct: 295 TVGKMVHLYIRDNIHNPDISLINSLLDM 322
>gi|298205132|emb|CBI40653.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
Q I+ + +T+LK ++S+ +A+ + +M Y FT LK C +
Sbjct: 139 QPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLR 198
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG EIH +I G ++F +++ Y + + A+++F+ + D+V W TIISG +
Sbjct: 199 KGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYA 258
Query: 144 KCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ GF K A+++ + +P++ T+VS+L A + +GS ++G++IH +S+R E+ +
Sbjct: 259 QNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVN 318
Query: 201 LDNAVLD 207
+ A++D
Sbjct: 319 VSTALVD 325
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 5/188 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSS 63
+K + L F +N H ++ +P IL N ++K TQ + I +Y M
Sbjct: 38 IKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVH 97
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
N +TF LKAC G +IH KYG ++F+QNSL+ Y I A +
Sbjct: 98 PNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIV 157
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + VV+WT+IISG + G EA+++F + +VKP+ LVSV++A +++
Sbjct: 158 FDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDL 217
Query: 181 KLGKAIHA 188
GK+IH
Sbjct: 218 GQGKSIHG 225
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++ +P+++ N ++ + + AI L+ +M+ + T A+ A + + +
Sbjct: 261 RMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLEL 320
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ ++ K + D F+ L+ Y I+ A +F+ V DVV W+ +I G
Sbjct: 321 ARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGL 380
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G +EAI ++ + V PN T + +L+AC + G K G
Sbjct: 381 HGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEG 422
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VK 161
N+ LHF D+ AH+ F V PD++ W II G ++ I M+ + V
Sbjct: 42 NACLHF----GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVH 97
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
PN T + VL AC +GK IH + + +N+ + N+++
Sbjct: 98 PNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLV 142
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ P A+ ++ +M C + + A + +G IH V K G +
Sbjct: 178 QNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPD 237
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
I SL Y + A FN + P+++ W +ISG + G+ +EAI +F + +
Sbjct: 238 IVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN 297
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ ++ T+ S + A + +GS +L + + + ++ ++ ++ ++D
Sbjct: 298 IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 345
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
Query: 27 KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IPQP+ + N+L++ + S P +A+ L+ +M+ S N +T LKAC A+ +
Sbjct: 47 QIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWE 106
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ +H IK G +F+QN+L+ YV I A ++F+ + +V+W ++I G +
Sbjct: 107 AVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAH 166
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G KEA +F + ++P+ T V++LS CS LG+ +H + +II+
Sbjct: 167 MGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIV 226
Query: 202 DNAVLDF 208
NA++D
Sbjct: 227 RNALVDM 233
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 34/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + A L+ KM + +TF L CS + G +H +
Sbjct: 158 NSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEI 217
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---------- 144
G DI ++N+L+ Y ++ SA IF+ +VV+WT++IS ++
Sbjct: 218 TGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQI 277
Query: 145 -----------------C----GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
C G ++EA+D+F + V P+ TLVS+L+ACS LG
Sbjct: 278 FDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDL 337
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
+GK IH + L N + L N+++D
Sbjct: 338 VMGKKIHNYILSNKGAYGVTLYNSLIDM 365
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + + A+ L+NKM N + T L ACS G +IH +++
Sbjct: 290 NSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILS 349
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + + NSL+ Y + +A IF + ++V+W II L+ G EAI +
Sbjct: 350 NKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKL 409
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLG 183
F + P+ TL +LSACS G +G
Sbjct: 410 FEEMQADGTLPDEITLTGLLSACSHSGLVDMG 441
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
+LS L++ H +I P ++ N +++ L+QS P AI +Y +M + + N+ T
Sbjct: 60 SLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTL 119
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
KAC+ G +IH H +K G +F+ N+L+H Y + A ++F+ ++
Sbjct: 120 IFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLD 179
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+V+W T+I G S+ +KE + +F ++K +A T+V ++ ACS LG + ++
Sbjct: 180 RDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSM 239
Query: 187 HAHSLRNLNENNIILDNAVLD 207
+ N E ++ L N ++D
Sbjct: 240 VKYIKENNLEIDVYLGNTLID 260
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+S +A+ L+ +M+ + T L AC+ G +H ++ ++G DI
Sbjct: 325 SQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADI 384
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
++ NSL+ Y + A ++F+ + D V+WT++ISGL+ GF A+D+F +
Sbjct: 385 YVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLRE 444
Query: 159 DVKPNANTLVSVLSACSSLG 178
V+P T V +L AC+ G
Sbjct: 445 GVQPTHGTFVGILLACAHAG 464
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---C 156
+I N+L+ + V ++ +A ++F+++ DV++WT++I+G S+ +A+ +F
Sbjct: 282 NIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMM 341
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VKP+ T+ SVLSAC+ LG +G A+H + R+ + +I + N+++D
Sbjct: 342 AAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLID 392
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFY-VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E+HAH+I+ D F+ + ++ Y ++ ++ AH +FN + P +V W +I GLS+
Sbjct: 35 ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQS 94
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
EAI M+ + + N TL+ + AC+ + G+ IH H+L+ E+ + +
Sbjct: 95 DHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVS 154
Query: 203 NAVL 206
NA++
Sbjct: 155 NALI 158
>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 23 AQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+QI++ + +LN L LL N+I LY+ +N P Y L+ C +
Sbjct: 29 SQILQFCKSGLLNDALHLL-------NSIDLYDSRINKPLLY-----ASLLQTCIKVDSF 76
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSVVFPDVVTWTTIISG 141
+G + HAHV+K G D F+ NSLL Y + D ++F+ + DVV+W ++I+G
Sbjct: 77 TRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITG 136
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ G AI++F + ++PN TL +V+ ACS +G+ LGK H +R ++N
Sbjct: 137 YVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSN 196
Query: 199 IILDNAVLD 207
++ ++++D
Sbjct: 197 PVILSSLID 205
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ ML+ N +T + +KACS G H V++ G + I +SL+
Sbjct: 146 AIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLID 205
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNAN 165
Y A Q+F+ ++ PD V WTT+IS ++ ++EA+ F + P+
Sbjct: 206 MYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNY 265
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T SVL+AC +LG + G+ IHA + N++ +++++D
Sbjct: 266 TFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVD 307
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 99/194 (51%), Gaps = 9/194 (4%)
Query: 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLY----NKMLNCPSSYNHYTFTQALK 74
Q+ ++++ P P T++ T++ + A+ + CP ++YTF L
Sbjct: 217 RQLFDELLE-PDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCP---DNYTFGSVLT 272
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC ++G EIHA VI YG ++ ++SL+ Y + + ++F+ + + V+
Sbjct: 273 ACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVS 332
Query: 135 WTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
W+ +++ G +++A+++F + + + + +V+ AC+ L + GK IH +R
Sbjct: 333 WSALLAVYCHNGDYEKAVNLFREMK-EVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKG 391
Query: 195 NENNIILDNAVLDF 208
++I+++A++D
Sbjct: 392 GWRDVIVESALVDL 405
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL + + + A+ L+ +M + Y+F ++AC+ A G EIH I+
Sbjct: 334 SALLAVYCHNGDYEKAVNLFREM----KEVDLYSFGTVIRACAGLAAVTPGKEIHCQYIR 389
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ ++++L+ Y I A+++F+ + +++TW ++I G ++ G AI +
Sbjct: 390 KGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQI 449
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ + + +L ACS G
Sbjct: 450 FEAMIKEGIKPDCISFIGLLFACSHTG 476
>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
Length = 559
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ + +A+ L++ ML +HYT ALKAC + IH+ +IK
Sbjct: 183 NALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIK 242
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS-KCGFHKEAID 153
G+ + + SL++ Y + + SA I++S+ PD+V+ T +ISG + + ++A++
Sbjct: 243 LGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAME 302
Query: 154 MFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+FC I K + L SVL C+S+ S + G IHA+ + + +I LDNA++D
Sbjct: 303 LFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDM 360
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ L+ K+ + + L C+ + + G +IHA++ K + DI + N+L
Sbjct: 298 EDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNAL 357
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + A + F+ + + +V++WT++I+ + G ++A+ +F + V+PN
Sbjct: 358 VDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPND 417
Query: 165 NTLVSVLSACSSLG 178
T +S+LSAC G
Sbjct: 418 VTFLSLLSACGHCG 431
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
++ P+ A+ L+ M + N +T+ A AC+ A + G ++HA K D+
Sbjct: 89 ARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDM 148
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+Q++L+ ++ + A Q+F + DVV+W +I G + G +A+ +F +
Sbjct: 149 FVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKE 208
Query: 159 DVKPNANTLVSVLSACSSLG 178
+ P+ TL S L AC +G
Sbjct: 209 AMIPDHYTLGSALKACGIVG 228
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
++ L+ C + A ++G +H V D+ + L+ FY D+ +A ++F+ +
Sbjct: 14 YSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKMFDGM 73
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGK 184
VV+WT ++SG ++ G +EA+++F +PN T S SAC+ G + G+
Sbjct: 74 PHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGE 133
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
+HA + + ++ + +A++D
Sbjct: 134 QVHACAAKGRFAGDMFVQSALMDM 157
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P P N L++ S +P A ++ KM + N TF LK+C++A A +G ++
Sbjct: 79 PSPISWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAVASALFEGKQV 138
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA +K G D+++ N+L++FY K I A ++F + VV+W ++++ + +
Sbjct: 139 HADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPERTVVSWNSVMTACVESLWL 198
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ I F G +P+ ++V +LSAC+ LG LG+ +H+ + ++ L A+
Sbjct: 199 GDGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVLSVQLGTAL 258
Query: 206 LDF 208
+D
Sbjct: 259 VDM 261
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N+++ +S + I + +M C + + L AC+
Sbjct: 176 EMPERTVVSWNSVMTACVESLWLGDGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSL 235
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H+ ++ G + + + +L+ Y + A +F + +V TW+ +I GL++
Sbjct: 236 GRWVHSQLVLRGMVLSVQLGTALVDMYGKSGALGYARDVFERMENRNVWTWSAMILGLAQ 295
Query: 145 CGFHKEAIDMFCGI--------DVKPNANTLVSVLSACSSLG 178
GF +EA+++F + D++PN T + VL ACS G
Sbjct: 296 HGFGEEALELFAIMNNNNNDNRDIRPNYVTYLGVLCACSHAG 337
>gi|297745258|emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 11 PTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY 67
P + L ++H P H + N L++ ++ + LY +M +HY
Sbjct: 74 PAKALSVLRRLH------PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHY 127
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF LKAC + + G +HA V G ++F+ N L+ Y +A Q+F+ +
Sbjct: 128 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 187
Query: 128 V---FPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLGSR 180
D+V+W +I++ + G A+ MF + ++P+A +LV+VL AC+S+G+
Sbjct: 188 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 247
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
GK +H ++LR+ ++ + NAV+D
Sbjct: 248 SRGKQVHGYALRSGLFEDVFVGNAVVD 274
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 98/186 (52%), Gaps = 13/186 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ Q A+ ++ +M + + + L AC+ A +G ++H + +
Sbjct: 199 NSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYAL 258
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G D+F+ N+++ Y + A+++F + DVV+W +++G S+ G +A+
Sbjct: 259 RSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALG 318
Query: 154 MF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR---NLNEN----NIIL 201
+F I++ PN TLVS+LS C+ G+ GK H H+++ NL+EN ++++
Sbjct: 319 LFEKIREEKIELNPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMV 378
Query: 202 DNAVLD 207
NA++D
Sbjct: 379 INALID 384
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q + A+ + M N Y+F L ACS + KG+++H+ + K
Sbjct: 121 NSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK 180
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L D++I ++L+ Y ++ A ++F+ + +VV+W ++I+ + G EA+D+
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDV 240
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVLD 207
F + V+P+ TL SV+SAC+SL + K+G+ +H ++N N+IIL NA +D
Sbjct: 241 FQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLY---NKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHA 90
N L+ TQ+ + A+ L+ + CP+ HY+F LKAC+ LA H G++ H
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPT---HYSFANILKACADLAELHL-GMQAHV 410
Query: 91 HVIKYG------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
HV+K+G DIF+ NSL+ YV + + +F ++ D V+W +I G ++
Sbjct: 411 HVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQ 470
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
G+ EA+++F + KP+ T++ VLSAC G + G+ + R+
Sbjct: 471 NGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDF 523
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q+ A+ ++ ML + T + AC+ A + G E+H V+K
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS--------------------------V 127
L +DI + N+ + Y I A IF+S +
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341
Query: 128 VFP-----DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F +VV+W +I+G ++ G ++EA+ +FC + V P + ++L AC+ L
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401
Query: 180 RKLGKAIHAHSLR------NLNENNIILDNAVLD 207
LG H H L+ + E++I + N+++D
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 36/138 (26%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA VIK G ++IFIQN L+ Y + Q+F+ + ++ TW ++++GL+K GF
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 148 HKEAIDMFCGIDVKP----------------------------------NANTLVSVLSA 173
EA +F + + N + SVLSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 174 CSSLGSRKLGKAIHAHSL 191
CS L + K + HSL
Sbjct: 162 CSGLND--MNKGVQVHSL 177
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 5/188 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSS 63
+K + L F +N H ++ +P IL N ++K TQ + I +Y M
Sbjct: 23 IKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVH 82
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
N +TF LKAC G +IH KYG ++F+QNSL+ Y I A +
Sbjct: 83 PNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIV 142
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + VV+WT+IISG + G EA+++F + +VKP+ LVSV++A +++
Sbjct: 143 FDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDL 202
Query: 181 KLGKAIHA 188
GK+IH
Sbjct: 203 GQGKSIHG 210
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++ +P+++ N ++ + + AI L+ +M+ + T A+ A + + +
Sbjct: 246 RMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLEL 305
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ ++ K + D F+ L+ Y I+ A +F+ V DVV W+ +I G
Sbjct: 306 ARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGL 365
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G +EAI ++ + V PN T + +L+AC + G K G
Sbjct: 366 HGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEG 407
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VK 161
N+ LHF D+ AH+ F V PD++ W II G ++ I M+ + V
Sbjct: 27 NACLHF----GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVH 82
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
PN T + VL AC +GK IH + + +N+ + N+++
Sbjct: 83 PNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLV 127
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ P A+ ++ +M C + + A + +G IH V K G +
Sbjct: 163 QNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPD 222
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
I SL Y + A FN + P+++ W +ISG + G+ +EAI +F + +
Sbjct: 223 IVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN 282
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ ++ T+ S + A + +GS +L + + + ++ ++ ++ ++D
Sbjct: 283 IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 330
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 9/211 (4%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
+ L+ ++ QL +IP P N L++ + AI LY ML
Sbjct: 38 QELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPP 97
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF LKACS G IHAH G D+F+ +L+ Y+ A +F
Sbjct: 98 NKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVF 157
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSR 180
+ DVV W +++G + G + AI DM ++PNA+TLVS+L + G+
Sbjct: 158 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGAL 217
Query: 181 KLGKAIHAHSLR---NLNENNIILDNAVLDF 208
G ++HA+ LR + NE +++ A+LD
Sbjct: 218 FQGTSVHAYCLRAYLDQNEEQVLIGTALLDM 248
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
LL Q+ + A ++ KM C + T + ACS A Q G H VI
Sbjct: 376 GALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVII 435
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I NSL+ Y I + Q+F+ + D+V+W T+I+G G KEA +
Sbjct: 436 RGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTL 495
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + +P+ T + +++ACS G GK
Sbjct: 496 FLSMKNQGFEPDDVTFICLIAACSHSGLVTEGK 528
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ AL+ C+ + G ++HA + K G D+ NSLL Y I A +F+ +
Sbjct: 308 SVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEI 367
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D +++ ++SG + G +EA +F + +V+P+ T+VS++ ACS L + + G+
Sbjct: 368 AIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGR 427
Query: 185 AIHA 188
H
Sbjct: 428 CSHG 431
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 84 KGLEIHAHVIKY---GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+G +HA+ ++ + + I +LL Y K + A ++F+ + + VTW+ +I
Sbjct: 219 QGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIG 278
Query: 141 GLSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLGSRKLGKAIHA 188
G C EA ++F + V+ +A ++ S L C+SL ++G +HA
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHA 330
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 12/191 (6%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQALKACS-LAHAH 82
+ P+I N LK L Q+S +AI +N ++ P++ N +TFT LKAC+ LAH
Sbjct: 50 LASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHV- 108
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIIS 140
G +IHA V K G ++F++NSL+ Y + A +F+ + D VV W +I+
Sbjct: 109 VNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIA 168
Query: 141 GLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
G ++ + +AI++F + V PN TLVSVL AC+ LG+ LGK I R
Sbjct: 169 GYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMA 228
Query: 197 NNIILDNAVLD 207
+ L NA+ D
Sbjct: 229 LGLFLGNALAD 239
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 8/155 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q+ +AI ++ M N T L AC+ A G I +
Sbjct: 164 NAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFIS 223
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ +F+ N+L Y I A ++FN + DV++W+ II GL+ G EA
Sbjct: 224 RREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFG 283
Query: 154 MF-----CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F CG KPN + +L+AC+ G K G
Sbjct: 284 CFYEMLDCG--EKPNDVVFMGLLTACTHAGLVKKG 316
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 7/151 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD----IFSA 120
N +T+ LKAC+ G +H V+K+G ++ +QN+L+H Y + I A
Sbjct: 9 NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFA 68
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 177
++F+ + D V+W+ +I G + G +AI++F + +K P+ T+VSVLSAC+ L
Sbjct: 69 RKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGL 128
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ +LGK + ++ + + N+ L NA++D
Sbjct: 129 GALELGKWVESYVEKERVQKNVELSNALIDM 159
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 49 NAIPLYNKML---NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
+AI L+ +M CP + T L AC+ A + G + ++V K ++ + N
Sbjct: 98 DAINLFREMQIKGVCP---DEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSN 154
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
+L+ + D+ A +F S+ ++V+WT++I GL+ G EA+ +F + V P
Sbjct: 155 ALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTP 214
Query: 163 NANTLVSVLSACSSLGSRKLGK 184
+ + +LSACS G GK
Sbjct: 215 DDVVFIGLLSACSHSGLVDKGK 236
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE---IHAH 91
N L+ + + A L+ M N ++T + ++ H +G+E +
Sbjct: 154 NALIDMFAKCGDVDKATNLFRSM----RERNIVSWTSVIGGLAM---HGRGVEAVAVFEE 206
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-----VFPDVVTWTTIISGLSKCG 146
+++ G D + LL + + F+S+ + P + + ++ L + G
Sbjct: 207 MVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAG 266
Query: 147 FHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNIIL 201
KEA+ + + PN ++++AC + G KLG+ I +RN ++E+N +L
Sbjct: 267 LVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVL 323
>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
Length = 1026
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 9/169 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + LN +++ + + + LY + C +++TF ++AC+ A Q G ++
Sbjct: 104 PAVYSLNLVVRCFSDHGFHRELLDLYRGL--CGFGSDNFTFPPVIRACTAASCLQLGRQV 161
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H V++ GH ++ +Q +LL Y I + ++F+ +V D+++W ++SG S G
Sbjct: 162 HCRVLRTGHGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCF 221
Query: 149 KEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+EA++ CG+ PNA+TLV ++ C S G R G ++HA +L+
Sbjct: 222 REAVETLQEMQQCGM--SPNASTLVGIVGMCGSAGDRVAGDSLHAFALK 268
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + + ++ L+ +M + ++ T + + S++ G +H+ IK
Sbjct: 513 NTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLISSLSVSEDAIVGESVHSLAIK 572
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+ + N+L+ Y + + Q+FNS + +T+ ++SG K ++ + +
Sbjct: 573 SGCISDVSLTNALITMYANCGIVEAGQQLFNSFCSRNTITYNALMSGYRKNNVSEKILPL 632
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
F + D KPN TL+++L C S + GK IH++++RN
Sbjct: 633 FTQMVKNDEKPNLVTLLNLLPVCQS---QLQGKCIHSYAVRNF 672
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHV 92
N+++ Q S + A ++ M N T L +CS L G +H +
Sbjct: 309 FNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMI 368
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK G + + ++L+ Y + + S+ +F + + W ++ISG A+
Sbjct: 369 IKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMAL 428
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
D FC + V P+A T+++V+S C + K+IHA+++RN E+ + NA+L
Sbjct: 429 DAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALL 485
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ +M C S N T + C A G +HA +K G + D + ++L
Sbjct: 222 REAVETLQEMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSAL 281
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPN 163
+ Y D+ S+ +F+ D+V++ ++IS + KEA ++F C V PN
Sbjct: 282 ISMYAAFDDLSSSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCA-GVGPN 340
Query: 164 ANTLVSVLSACSSL 177
TLVSVL +CS L
Sbjct: 341 LITLVSVLPSCSDL 354
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ +++ + +PL+ +M+ N T L C + +G IH++ ++
Sbjct: 614 NALMSGYRKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPVC---QSQLQGKCIHSYAVR 670
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + S + Y +I IF+ V +++ W +S +C +D
Sbjct: 671 NFTRLETPLFTSAMGMYSRFNNIEYCRTIFSLVSARNLIVWNAFLSACVQCKQADMVVDY 730
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++V+P+ T+++++SACS LG+ I A L+ NI++ NA++D
Sbjct: 731 FKHMLFLNVRPDEVTMLALISACSQLGNADFAACIMAVILQKGFSMNILVLNALID 786
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N L Q + + ML + T + ACS I A +
Sbjct: 710 VWNAFLSACVQCKQADMVVDYFKHMLFLNVRPDEVTMLALISACSQLGNADFAACIMAVI 769
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++ G +I + N+L+ + I A ++F+S V D VTW +I+ S G + A+
Sbjct: 770 LQKGFSMNILVLNALIDTHSRCGSISFARELFDSSVEKDSVTWGAMINAYSMHGNGEAAL 829
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+F + V P+ T VS+LSACS G + G+ +
Sbjct: 830 DLFSMMIDSGVDPDDITFVSILSACSHNGLVEQGRTL 866
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSK 144
EIHA + G + D F+ L+ YV+ SA +F P V + ++ S
Sbjct: 59 EIHARLAVAGAIQDRFVVTGLVERYVSFGKPASAALLFAEAYRGRPAVYSLNLVVRCFSD 118
Query: 145 CGFHKEAIDMFCGIDVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
GFH+E +D++ G+ + N T V+ AC++ +LG+ +H LR + +N+ +
Sbjct: 119 HGFHRELLDLYRGLCGFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGSNVGVQT 178
Query: 204 AVLD 207
A+LD
Sbjct: 179 ALLD 182
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + C IHA+ ++ + N+LL Y DI +++ +F +
Sbjct: 445 TVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMYADCGDISTSYTLFQKM 504
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+++W T+ISG ++ G + ++ +FC + +V + TL+ ++S+ S +G+
Sbjct: 505 EVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLISSLSVSEDAIVGE 564
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
++H+ ++++ +++ L NA++
Sbjct: 565 SVHSLAIKSGCISDVSLTNALI 586
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I +P++ N + + ++SS P I LYN ML + ++Y+F LKAC+ K
Sbjct: 86 QIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHK 145
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTWTTIISGL 142
G EIH+ +K G D+F+QN+L+ + + + +A +F+ + + DVV+W ++ISG
Sbjct: 146 GREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGY 205
Query: 143 SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ ++ A+ +F + + P+ TLVS LS C LG LGK IH
Sbjct: 206 LQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHG 255
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ QS + A+ ++ ++L S S + T AL C G +IH
Sbjct: 199 NSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFT 258
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + D+F+ +SL+ Y I A ++F+ + + V WT++I+G ++ KEAI+
Sbjct: 259 GSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIE 318
Query: 154 MFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + + +A T+ VLSAC G+ G+ IH + RN E ++ NA++
Sbjct: 319 LFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALI 374
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 6/168 (3%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
Q+ +IP + + +++ QS + AI L+ +M + + T L
Sbjct: 281 QIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLS 340
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC A +G IH + + D+ +N+L+ Y DI A +IF+ + PD+ +
Sbjct: 341 ACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFS 400
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
W+ +ISGL+ G +A+ +F + D++PN T + VL AC+ G
Sbjct: 401 WSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGG 448
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLSKC 145
+I +H I G D + + LL++ ++ F+ + +F + P+V +W + S+
Sbjct: 46 QILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRS 105
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
F E I ++ + P+ + VL AC+ L G+ IH+ +L+ ++ +
Sbjct: 106 SFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQ 165
Query: 203 NAVL 206
NA++
Sbjct: 166 NALI 169
>gi|255565109|ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537254|gb|EEF38886.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 555
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TF LKAC+ QKG+EIH V K G D+F+ N+LL FY + A ++F
Sbjct: 9 DDHTFPFVLKACADNLNVQKGMEIHGCVFKLGFDFDVFVGNTLLLFYGNTGYLSDAKKVF 68
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSR 180
+ ++ DVV+W T++ S GF+ +A+D+F +++ +PN T+VSVL C++L
Sbjct: 69 DEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMNLRSGFRPNMVTVVSVLPVCAALEDE 128
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+ IH + ++ ++ + L NA++D
Sbjct: 129 VVASEIHCYVVKIGLDSQVTLCNALVD 155
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
NTLL + + A+ L+ +M N S + N T L C+ EIH +V
Sbjct: 80 NTLLGAFSVNGFYLKALDLFYEM-NLRSGFRPNMVTVVSVLPVCAALEDEVVASEIHCYV 138
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G + + N+L+ Y ++ S+ ++F+ ++ + V+W II+ L+ +K+A+
Sbjct: 139 VKIGLDSQVTLCNALVDVYGKCGNLKSSRRVFDEMMERNEVSWNAIITSLAYMEHNKDAL 198
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ F +VKPN+ T+ S+L L LGK IH SLR E+++ + N+++D
Sbjct: 199 EAFRLMINEEVKPNSVTIASILPVLVELEHFDLGKEIHGFSLRFGIESDVFISNSLID 256
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI L +M + N TFT AL AC+ + G EIHA +
Sbjct: 283 NAMVANFAQNRFELAAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHARAFR 342
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ N+L Y + A +FN + D V++ +I G S+ E++ +
Sbjct: 343 MGCYFDQFVSNALTDMYAKCGFLNLARNVFN-ISLRDEVSYNILIVGYSQTTNSSESLSL 401
Query: 155 FCGIDVKPNANTLVS---VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + + +VS V++AC+SL + K G+ IHA +R +I + N++LDF
Sbjct: 402 FLEMGLVGMERDVVSYMGVIAACASLVALKQGEEIHALVVRKNLHMHIFIANSLLDF 458
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ +Q++ ++ L+ +M + ++ + AC+ A ++G EIHA V++
Sbjct: 383 NILIVGYSQTTNSSESLSLFLEMGLVGMERDVVSYMGVIAACASLVALKQGEEIHALVVR 442
Query: 95 YG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
H+H IFI NSLL FY I A +IF + D +W TII G+ G + AI+
Sbjct: 443 KNLHMH-IFIANSLLDFYTKCGKIDLACKIFYRISEKDAASWNTIILGVGMLGELEAAIN 501
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+F + V+ ++ + ++VLSACS G + GK A
Sbjct: 502 LFEAMREDGVEYDSVSYIAVLSACSHGGLVEKGKKYSA 539
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L ++A+ + M+N N T L G EIH ++
Sbjct: 182 NAIITSLAYMEHNKDALEAFRLMINEEVKPNSVTIASILPVLVELEHFDLGKEIHGFSLR 241
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGFHK 149
+G D+FI NSL+ Y S H SVVF +VV+W +++ ++ F
Sbjct: 242 FGIESDVFISNSLIDMYAK-----SGHSTQASVVFHLMTEKNVVSWNAMVANFAQNRFEL 296
Query: 150 EAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
AI++ + PN T + L AC+ +G + GK IHA + R
Sbjct: 297 AAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHARAFR 342
>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ LT + A+ LY KM + + YTF + AC+ + G + HV++
Sbjct: 2 NSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVLE 61
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D++I N+L+ Y D+ A +F + D+V+W ++ISG S G+ EA+++
Sbjct: 62 IGFGFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALEI 121
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN-NIILDNAVL 206
+ + + KP+ TL SVL AC L + K G+ IH + L N ++I+ N +L
Sbjct: 122 YYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGL-VEKLGMNIDVIMSNGLL 176
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + + A+ +Y ++ +++T + L AC A ++G IH V K
Sbjct: 103 NSLISGYSANGYWDEALEIYYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEK 162
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N LL Y + A ++FN +V D V+W T+I G + +E+I +
Sbjct: 163 LGMNIDVIMSNGLLSMYFKFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQL 222
Query: 155 FCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +P+ T+ SVL AC L + GK +H + LR+ E ++ N V+D
Sbjct: 223 FREMVKRFRPDLLTITSVLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVID 277
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ Q + +I L+ +M+ + T T L+AC L + G +H ++++
Sbjct: 204 NTLICGYCQMELFEESIQLFREMVK-RFRPDLLTITSVLRACGLLRDLEFGKFVHDYILR 262
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ N ++ Y D+ ++ + F+ + D V+W T+I+G + + E + +
Sbjct: 263 SGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSVSWNTLINGYIQSRSYGEGVKL 322
Query: 155 F--CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F +D+KP++ T V++LS + L +LGK IH + ++++++ NA++D
Sbjct: 323 FKKMKMDLKPDSITFVTLLSISTRLADTELGKEIHCDLAKLGFDSDLVVSNALVD 377
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 4/185 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IK NTL+ QS + + L+ KM + TF L + + G
Sbjct: 295 IKCRDSVSWNTLINGYIQSRSYGEGVKLFKKM-KMDLKPDSITFVTLLSISTRLADTELG 353
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL--- 142
EIH + K G D+ + N+L+ Y ++ + ++F ++ D+VTW TII+
Sbjct: 354 KEIHCDLAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTIIAACVQA 413
Query: 143 SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
C I ++ P+ TL+ +L CS + +++ GK +HA + + E+ + +
Sbjct: 414 EDCTLAFRMISQMRNEELIPDMGTLLGILPICSLIAAKRQGKEVHACTFKFGFESTVPVG 473
Query: 203 NAVLD 207
NA+++
Sbjct: 474 NALIE 478
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K+ NT++ Q+ A + ++M N + T L CSL A ++G
Sbjct: 395 MKVRDIVTWNTIIAACVQAEDCTLAFRMISQMRNEELIPDMGTLLGILPICSLIAAKRQG 454
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E+HA K+G + + N+L+ Y ++ ++F + DVVTWT ++S
Sbjct: 455 KEVHACTFKFGFESTVPVGNALIEMYSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYGMY 514
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
G K+A+ F ++ + P+ V+++ ACS GS + G A H
Sbjct: 515 GEGKKALRAFAEMEEAGIIPDHIAFVAIIYACSHSGSVEEGLACFDH 561
Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
W ++I L+ G +A+D++ + +VKP+ T SV++AC++LG ++G + H L
Sbjct: 1 WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVL 60
Query: 192 RNLNENNIILDNAVLD 207
++ + NA++D
Sbjct: 61 EIGFGFDLYIGNALVD 76
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 77/263 (29%)
Query: 22 HAQII--KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY----NHYTFTQAL 73
HA ++ +IP+P + NTL++ ++ P++A+ LY +ML + TF L
Sbjct: 60 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVL 119
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT-------------------- 113
+AC+ A G+++HAHV+K G D F++N+L+ + +
Sbjct: 120 RACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAV 179
Query: 114 --------------------------VKDIFS----------------AHQIFNSVVFPD 131
VKD+ S A ++F+ V D
Sbjct: 180 AWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERD 239
Query: 132 VVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
VV+W +ISG +CG H A+++F + KP+ T++S+LSAC+ G +G+ +H+
Sbjct: 240 VVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS 299
Query: 189 HSLRNLNENN---IILDNAVLDF 208
SL ++ N ++L NA++D
Sbjct: 300 -SLSDMFSRNGFPVVLGNALIDM 321
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N ++ + + +A+ L+ +M + T L AC+ +
Sbjct: 234 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 293
Query: 85 GLEIHAHVIKYGHLHDIF--------IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
G +H+ L D+F + N+L+ Y + SAH++F S+ DV TW
Sbjct: 294 GQRLHSS------LSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWN 347
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+I+ GL+ G E+IDMF + V+P+ T V+VL ACS G G+
Sbjct: 348 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGR 398
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 72 ALKAC-SLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFS-AHQIFNSVV 128
A + C SL H Q +HA + G L D ++ L V V+ + A+ +F+ +
Sbjct: 14 AWRRCRSLRHIKQ----MHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIP 69
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLGSRK 181
PD + T+I G + ++A+ ++ + V+P+ T VL AC+++G+
Sbjct: 70 RPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGD 129
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
G +HAH ++ E++ + NA++
Sbjct: 130 TGVQVHAHVVKAGCESDAFVKNALI 154
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P +I NT+++ +++ Q + +M+ + +F ALKAC +G +
Sbjct: 113 PNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSV 172
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H V K G ++ + +QN L+HFY + A +F+ + DVV+WT++I G SK +
Sbjct: 173 HCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWC 232
Query: 149 KEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH-----SLRNLNENN 198
EA+ +F G+ V+PN T+++VLS+CS G LGK + R+LN N
Sbjct: 233 DEALKLFDSMLMYGV-VEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMN 291
Query: 199 IILD 202
ILD
Sbjct: 292 AILD 295
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+++N +L + + +A +++ M + + T L C G IH +
Sbjct: 288 NLMNAILDMYVKCGCLDSAREIFDTMGAAFAPMEN-TLACVLPVCGQLGCLDVGQWIHRN 346
Query: 92 VIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
++ + + + N+L+ Y I A ++FN + ++V+W ++I+ + G K+
Sbjct: 347 YVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQ 406
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLG 178
A+ +F + KP+ TLV VLSACS G
Sbjct: 407 ALSVFERMISGGFKPDDITLVGVLSACSHGG 437
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+I AH+ K + F + +L F DI AH +F+ + P+ W T+I G SK
Sbjct: 68 QIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMIRGYSK 127
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ FC + V+ + + V L AC GK++H
Sbjct: 128 AKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVH 173
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ L+ Q A+ L M + N TF L+ C+ A +
Sbjct: 208 RLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH 267
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H ++I+ G+ ++++ NSL+ Y + A ++F+ + DVVTWT +++G ++
Sbjct: 268 GKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQ 327
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH---AHSLRNLN 195
GFH EAI++F + +KP+ T SVL++CSS + GK IH H+ NL+
Sbjct: 328 LGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLD 384
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ +M + TFT L +CS Q+G IH ++ G+ D+++Q++L+
Sbjct: 334 AINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVS 393
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH---KEAIDMFCGID---VKPN 163
Y + A +FN + +VV WT II+G C H +EA++ F + +KP+
Sbjct: 394 MYAKCGSMDDASLVFNQMSERNVVAWTAIITGC--CAQHGRCREALEYFDQMKKQGIKPD 451
Query: 164 ANTLVSVLSACSSLGSRKLGK 184
T SVLSAC+ +G + G+
Sbjct: 452 KVTFTSVLSACTHVGLVEEGR 472
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 37/217 (17%)
Query: 14 SFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLY---------------- 54
S +Q ++HA I+K P ++ NTLL + + + +A ++
Sbjct: 62 SLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIE 121
Query: 55 -----NKMLNCPSSY----------NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
NK L Y + TF L A + Q G ++H +++ G
Sbjct: 122 AFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLEL 181
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
+ + SL+ Y DI A IF+ + +VVTWT +I+G ++ G A+++ +
Sbjct: 182 EPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQ 241
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+V PN T S+L C++ + + GK +H + +++
Sbjct: 242 QAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQS 278
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ +L ++ + A+ + N M+ + F L+ C+ + ++G E+HA ++K G
Sbjct: 19 VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ +++N+LL Y + A ++F+S+ ++V+WT +I + EA +
Sbjct: 79 QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138
Query: 158 IDV---KPNANTLVSVLSACSSLGSRKLGKAIH 187
+ + KP+ T VS+L+A ++ +LG+ +H
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ A+ LY++ML + YTF L+ C +G E+H HVI+
Sbjct: 164 NVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIR 223
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
YG D+ + N+L+ YV DIFSA +F+ + D ++W +ISG + E + +
Sbjct: 224 YGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRL 283
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + V P+ T+ SV+SAC +LG +LG+ +H + ++ + ++N+++
Sbjct: 284 FFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLI 338
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
++ P+ A+ Y M + + T L AC+ KG+ +H + G +
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVI 433
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG--IDV 160
+ NSL+ Y + I A ++F+ + +V++WT+II GL EA+ F + +
Sbjct: 434 VANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSL 493
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
KPN+ TLVSVLSAC+ +G+ GK IHAH+LR + L NA+LD
Sbjct: 494 KPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLD 540
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T + AC + G E+H +VIK G + ++ + NSL+ + +V A +F+ +
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F D+V+WT +ISG K G ++A++ + ++ V P+ T+ SVLSAC+ LG G
Sbjct: 358 EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI 417
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H + R + +I+ N+++D
Sbjct: 418 MLHEFADRTGLTSYVIVANSLID 440
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L + A+ + M S T+ L+ C A +G +H++V K
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + N+LL +V D+ A +F + D+ +W ++ G +K G+ EA+++
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + ++P+ T VL C L G+ +H H +R E+++ + NA++
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALI 237
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ A G EIHAH ++ G D F+ N+LL YV + A F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
NS DV +W +++G ++ G A+++F + DV P+ T S+L ACS G
Sbjct: 556 NSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611
>gi|356495279|ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial-like [Glycine max]
Length = 944
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NTL+ + + A+ +N M P +Y+ T AL AC+ G +H +
Sbjct: 570 NTLIVGCVRCDHFREALETFNLMRQEPPLNYDSITLVSALSACANLELFNLGKSLHGLTV 629
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K D +QNSL+ Y +DI SA +F P++ +W +IS LS +EA++
Sbjct: 630 KSPLGSDTRVQNSLITMYDRCRDINSAKVVFKFFSTPNLCSWNCMISALSHNRESREALE 689
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+F + +PN T++ VLSAC+ +G + GK +HAH R ++N + A++D
Sbjct: 690 LFLNLQFEPNEITIIGVLSACTQIGVLRHGKQVHAHVFRTCIQDNSFISAALIDL 744
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ + P+ A+ + +M + ++ + A+ A S G +H IK
Sbjct: 262 NSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAISASSSLGELSFGQSVHGLGIK 321
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + + NSL+ Y +DI +A +F + D+V+W ++ G + G KE D+
Sbjct: 322 LGYKSHVSVANSLISLYSQCEDIKAAETLFREIALKDIVSWNAMMEGFASNGKIKEVFDL 381
Query: 155 FCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ +P+ TL+++L C+ L + G+ IH +++R
Sbjct: 382 LVQMQKVGFFQPDIVTLITLLPLCAELMLSREGRTIHGYAIRR 424
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML----NCPSSYNHYTFTQALKACSLAHAHQK--GLEI 88
N ++ + + + A L+ +ML NC SS T L +C+ + + G +
Sbjct: 466 NAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSS----TVFAILSSCNSLNINSIHFGKSV 521
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-NSVVFPDVVTWTTIISGLSKCGF 147
H +K G L+ I + N L+H Y+ D+ ++ I + D+ +W T+I G +C
Sbjct: 522 HCWQLKSGFLNHILLINILMHMYINCGDLTASFSILHENSALADIASWNTLIVGCVRCDH 581
Query: 148 HKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+EA++ F + +P N TLVS LSAC++L LGK++H ++++
Sbjct: 582 FREALETFNLMRQEPPLNYDSITLVSALSACANLELFNLGKSLHGLTVKS 631
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L C+ ++G IH + I+ + D + + NSL+ Y + A +FNS
Sbjct: 397 TLITLLPLCAELMLSREGRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEKAELLFNS 456
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCG-IDVKPN--ANTLVSVLSACSSL--GSRK 181
D V+W +ISG S + +EA ++F + PN ++T+ ++LS+C+SL S
Sbjct: 457 TAEKDTVSWNAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNSLNINSIH 516
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GK++H L++ N+I+L N ++
Sbjct: 517 FGKSVHCWQLKSGFLNHILLINILM 541
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L+ + + A+ L+ LN N T L AC+ + G ++HAHV +
Sbjct: 672 NCMISALSHNRESREALELF---LNLQFEPNEITIIGVLSACTQIGVLRHGKQVHAHVFR 728
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ FI +L+ Y + +A Q+F W ++IS G ++AI +
Sbjct: 729 TCIQDNSFISAALIDLYSNCGRLDTALQVFRHAKEKSESAWNSMISAYGYHGKGEKAIKL 788
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F C + + +T VS+LSACS G
Sbjct: 789 FHEMCESGARVSKSTFVSLLSACSHSG 815
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++KM+ + ++ T + A +G IH IK G L DI + N+L+
Sbjct: 176 AMDFFDKMIKAQTGFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVDISLGNALVD 235
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---T 166
Y D+ S+ ++ + D V+W +I+ G ++A+ F + +
Sbjct: 236 MYAKCGDLSSSECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVS 295
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLR 192
L +SA SSLG G+++H ++
Sbjct: 296 LCCAISASSSLGELSFGQSVHGLGIK 321
Score = 42.7 bits (99), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K G L + SLL Y D S+ +F+ + D + W I++ + +
Sbjct: 114 HCAALKIGALAHLPTSTSLLTIYSKAGDFTSSKGLFDEIQNRDAIAWNAIVAASLENKCY 173
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ A+D F + ++ TL+ ++SA + + G+AIH S+++ +I L NA+
Sbjct: 174 RIAMDFFDKMIKAQTGFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVDISLGNAL 233
Query: 206 LDF 208
+D
Sbjct: 234 VDM 236
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N+L+K ++ +A+ Y +ML + YTFT +KAC+ G +
Sbjct: 71 PDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLV 130
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+HV G+ D F+Q +L+ FY A ++F+ + +V W ++ISG + G
Sbjct: 131 HSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLA 190
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
EA+++F + V+P++ T VSVLSACS LGS G +H
Sbjct: 191 NEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLH 232
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
KS P ++ K +++ PQ I+ N+++ Q+ A+ ++NKM
Sbjct: 155 KSCTPRVARKVFDEM-------PQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEP 207
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ TF L ACS + G +H ++ G ++ + SL++ + D+ A +F
Sbjct: 208 DSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVF 267
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRK 181
S++ +VV WT +ISG G+ EA+++F + + PN+ T V+VLSAC+ G
Sbjct: 268 YSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLID 327
Query: 182 LGKAIHA 188
G+++ A
Sbjct: 328 EGRSVFA 334
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+ HAH++ G + LL I ++F SV PD + ++I SK G
Sbjct: 28 QAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFG 87
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F +A+ + + + P+ T SV+ AC+ L +G +H+H
Sbjct: 88 FSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSH 133
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
L QIH P +I N++++ S P+ ++ LY +M+ S +H+TF LKAC
Sbjct: 61 LRQIHN-----PSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACC 115
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ G IH+ ++K G D + LLH YV+ D+ S ++F+++ +VV WT
Sbjct: 116 VIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTC 175
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-- 192
+I+G K EA+ +F + +V+PN T+V+ L AC+ G+ +H +
Sbjct: 176 LIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAG 235
Query: 193 -----NLNENNIILDNAVLDF 208
+ + +NIIL A+L+
Sbjct: 236 YDPFMSTSNSNIILATAILEM 256
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+PQ +I+ N+++ Q Q A+ L+ M + TF L C+ A
Sbjct: 272 KMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALAL 331
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +HA+++K G DI + +LL Y ++ +A +IF+S+ DVV WT++I+GL+
Sbjct: 332 GQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAM 391
Query: 145 CGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLG 178
G EA+ MF + + P+ T + VL ACS +G
Sbjct: 392 HGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVG 429
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 94/193 (48%), Gaps = 12/193 (6%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+ +++ L+ +++ P A+ ++ M + N T AL AC+ + G
Sbjct: 165 IPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTG 224
Query: 86 LEIHAHVIKYGHL-------HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
+H + K G+ +I + ++L Y + A +FN + ++V+W ++
Sbjct: 225 RWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSM 284
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+ ++ H+EA+D+F + V P+ T +SVLS C+ + LG+ +HA+ L+
Sbjct: 285 INAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGI 344
Query: 196 ENNIILDNAVLDF 208
+I L A+LD
Sbjct: 345 ATDISLATALLDM 357
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 96/179 (53%), Gaps = 4/179 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P+ N +++ L +P NA+ L+ KM ++ +TF+ LKACS A ++G
Sbjct: 81 IDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREG 140
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA ++K G + F++N+L+ Y I A +F+ + +V W +++SG +K
Sbjct: 141 EQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKN 200
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNII 200
G E + +F I ++ + T++SVL AC L + ++G+ I + + + L NN +
Sbjct: 201 GLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTL 259
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ I+ N++L T++ + L+ K+L ++ T L AC + G
Sbjct: 182 MPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG 241
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
I +++ G + + SL+ Y + +A ++F+ + DVV W+ +ISG ++
Sbjct: 242 ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
KEA+++F + +V PN T+VSVL +C+ LG+ + GK +H + + + + L
Sbjct: 302 DRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLG 361
Query: 203 NAVLDF 208
++DF
Sbjct: 362 TQLIDF 367
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ L+++M N T L +C++ A++ G +H ++ K +
Sbjct: 300 QADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVT 359
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ L+ FY I + ++F + F +V TWT +I GL+ G K A++ F + D
Sbjct: 360 LGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLEND 419
Query: 160 VKPNANTLVSVLSACS 175
VKPN T + VLSACS
Sbjct: 420 VKPNDVTFIGVLSACS 435
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
++HAH++K L D I ++L + I A IFN + P+ + +I GL+
Sbjct: 39 QVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAF 98
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
A+ +F + V+ + T SVL ACS + + + G+ +HA L++ ++N +
Sbjct: 99 KRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFV 158
Query: 202 DNAVL 206
+N ++
Sbjct: 159 ENTLI 163
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 5/187 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KIP+ ++ N L++ + NAI LY+KML+ +++T LKACS A +
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH +VIK G D+F+ +L+ Y + A ++F+ +V D V W ++++ ++
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226
Query: 145 CGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G E+I + V+P TLV+V+S+ + + G+ IH R+ ++N +
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286
Query: 202 DNAVLDF 208
A++D
Sbjct: 287 KTALIDM 293
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
P HY +T L++C + A G ++HA G ++ + L+H Y + +A
Sbjct: 42 PQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNA 101
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSL 177
+F+ + ++ W +I G + G H AI ++ ++P+ TL VL ACS+L
Sbjct: 102 RNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSAL 161
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ G++IH + +++ E ++ + A++D
Sbjct: 162 SAIGEGRSIHEYVIKSGWERDLFVGAALIDM 192
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N++L Q+ P +I L +M T + + + G EIH
Sbjct: 216 LWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFG 275
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++G + ++ +L+ Y + A +F + VV+W II+G + G A+
Sbjct: 276 WRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGAL 335
Query: 153 DMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
D+F + + +P+ T V VL+ACS G+A++ +R+
Sbjct: 336 DLFDKMRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRD 378
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 6/200 (3%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFT 70
SF L +IP+P+ NTL++ P +I + M++ Y N YTF
Sbjct: 76 SFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFP 135
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+KA + + G +H +K D+F+ NSL+H Y + D+ SA ++F ++
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
DVV+W ++I+G + G +A+++F + DVK + T+V VLSAC+ + + + G+ +
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 188 AHSLRNLNENNIILDNAVLD 207
++ N N+ L NA+LD
Sbjct: 256 SYIEENRVNVNLTLANAMLD 275
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQK 84
+PQ I+ N L+ Q+ P A+ +++++ L N T L AC+ A +
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+++ K+G + + ++L+H Y D+ + ++FNSV DV W+ +I GL+
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EA+DMF + +VKPN T +V ACS G
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 35/190 (18%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-- 92
N+++ Q +P A+ L+ KM + +H T L AC+ + G ++ +++
Sbjct: 201 NSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEE 260
Query: 93 -----------------IKYGHLHDI------------FIQNSLLHFYVTVKDIFSAHQI 123
K G + D ++L Y +D +A ++
Sbjct: 261 NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREV 320
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGS 179
NS+ D+V W +IS + G EA+ +F + ++ N TLVS LSAC+ +G+
Sbjct: 321 LNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGA 380
Query: 180 RKLGKAIHAH 189
+LG+ IH++
Sbjct: 381 LELGRWIHSY 390
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI ++ MLN N +T LKACS A + G ++H+ V+K D+F+ SL+
Sbjct: 268 AIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMD 327
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANT 166
Y +I ++F+ + + VTWT+II+ ++ GF +EAI +F + + N T
Sbjct: 328 MYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLT 387
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+VS+L AC S+G+ LGK +HA ++N E N+ + + ++
Sbjct: 388 VVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLV 427
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N F L CS + G ++H +++K G + ++ +++SL++FY ++ SA + F
Sbjct: 183 NERMFVCLLNLCSRRAEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALRAF 241
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + DV++WT +IS S+ G +AI MF G+ PN T+ S+L ACS + +
Sbjct: 242 DMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALR 301
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +H+ ++ + + ++ + +++D
Sbjct: 302 FGRQVHSLVVKRMIKTDVFVGTSLMD 327
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N+ T L+AC A G E+HA +IK +++I ++L
Sbjct: 367 EEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTL 426
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + A + + DVV+WT +ISG S G EA+D + V+PN
Sbjct: 427 VWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNP 486
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S L AC++ S +G++IH+ + +N +N+ + +A++
Sbjct: 487 FTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALI 528
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
A+ +M+ N +T++ ALKAC+ + + G IH+ K L ++F+ ++
Sbjct: 467 ESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 526
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---N 163
L+H Y + A ++F+S+ ++V+W +I G ++ GF +EA+ + ++ + +
Sbjct: 527 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVD 586
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHS 190
++LS C G +L +A+ + +
Sbjct: 587 DYIFATILSTC---GDIELDEAVESSA 610
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
IHA +K I+ N+L+ V + D+ A ++F+S+ + VTWT +I G K G
Sbjct: 103 RIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYG 162
Query: 147 FHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
EA +F GI N V +L+ CS +LG+ +H + ++ + N+I+
Sbjct: 163 LEDEAFALFEDYVKHGIRF-TNERMFVCLLNLCSRRAEFELGRQVHGNMVK-VGVGNLIV 220
Query: 202 DNAVLDF 208
+++++ F
Sbjct: 221 ESSLVYF 227
>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 8/190 (4%)
Query: 24 QIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNK-MLNCPSSYNHYTFTQALKACSLA 79
QI K Q H L +++ Q+ P A+ +++ ML+C + AL+ACS
Sbjct: 304 QIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFP-DPVILLAALRACSFL 362
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+G+ IH IK G D+F+ +L+ FY D+ A Q+F + D+V+W +I
Sbjct: 363 SLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALI 422
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
SG ++ EA+ F + +KPN T+ +LS C+ L L K +H + LR+ E
Sbjct: 423 SGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFE 482
Query: 197 NNIILDNAVL 206
N +++N+++
Sbjct: 483 TNALVNNSLI 492
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL-KACSLAHAHQKGLEIHAHV 92
+N ++K T+ ++AI +Y + C + F L KA + KG +IH H+
Sbjct: 6 VNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHL 65
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+G L DIF++NSLL Y +A +F + D V+W T+ISG + G + +++
Sbjct: 66 LKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSL 125
Query: 153 DMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
MF CG N ++ LS+C+S+ G IH ++ +++ L +A++
Sbjct: 126 VMFRRMVKECGGSYH-NRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALI 184
Query: 207 D 207
+
Sbjct: 185 E 185
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHV 92
NT++ QS ++ ++ +M+ C SY N AL +C+ GLEIH +
Sbjct: 109 NTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFL 168
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-----NSVVFPDVVTWTTIISGLSKCGF 147
+K G D F+ ++L+ Y+ DI +A +F N +V ++ W +I G
Sbjct: 169 VKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNEC 228
Query: 148 HKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
A+++F + + P+++T+V VL CS L +GK IH
Sbjct: 229 LSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHG 272
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +ML S + T L CS G +IH ++ G D+ + +L+
Sbjct: 232 ALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALME 291
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF------CGIDVKPN 163
Y D ++ QIF ++V W +++ ++ G+ EA++ F CG P+
Sbjct: 292 MYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGF---PD 348
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L++ L ACS L + G AIH +++ ++++ + A++DF
Sbjct: 349 PVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDF 393
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q+ A+ + M + N T L C+ E+H ++++
Sbjct: 419 NALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLR 478
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + + NSL+ Y DI S+ +F + + VTW +I+ G G H +M
Sbjct: 479 HWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGF---GMHGRTDEM 535
Query: 155 FCGID------VKPNANTLVSVLSACSSLGSRKLG 183
F + +KP+ T S+LS+CS G G
Sbjct: 536 FATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAG 570
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 106/191 (55%), Gaps = 10/191 (5%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+++ P P LNT+L++ SS P A+ L+ + L P ++ T+ L+AC+ + +
Sbjct: 79 RVLPDPDPFSLNTVLRIAASSSRPSLALALHARRLAPPDTH---TYPPLLQACARLLSLR 135
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISG 141
G IHA K G +F++NSL+H Y SAH++F+ + + +V+W ++++G
Sbjct: 136 HGERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNG 195
Query: 142 LSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNEN 197
+ G E + +F ++ P+ T+VSVL+A + +G+ LG+ +H + + L EN
Sbjct: 196 FAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVEN 255
Query: 198 NIILDNAVLDF 208
+ + NA++D
Sbjct: 256 SHV-GNALIDL 265
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L + P + ++ +ML+ + +T L A + A G +H ++ K
Sbjct: 190 NSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTK 249
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAID 153
G + + + N+L+ Y + A ++F + VV+WT++I GL+ GF KEA++
Sbjct: 250 VGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALE 309
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLG 178
+F ++ + P T+V VL ACS G
Sbjct: 310 LFGIMEREKLVPTEITMVGVLYACSHCG 337
>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 885
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q +N + L+ +ML C ++ +YT + LK C+ + ++G +H+ I+
Sbjct: 264 NALLNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIR 323
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D F+ +L+ Y + A ++FN + PD+V W+ II+GL + G +EA ++
Sbjct: 324 RAYELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAEL 383
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
F + V+PN + SV+SA +++G LG++IH
Sbjct: 384 FHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIH 419
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 5/185 (2%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I +P I+ + ++ L Q Q A L++ M N ++F + A + G
Sbjct: 356 IEEPDIVAWSAIITGLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLG 415
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH + KYG+ D + N+L+ Y+ + ++F+++ D+V+W ++SG
Sbjct: 416 QSIHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGFYDF 475
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+ + +FC + ++ PN T V VL +CSSL + GK +HAH ++N + N +
Sbjct: 476 ETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVG 535
Query: 203 NAVLD 207
A++D
Sbjct: 536 TALID 540
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ + A+ +ML N +T L CS G ++H+ IK GH D+
Sbjct: 574 SQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHSLAIKSGHSGDV 633
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ ++L+ Y + A IF + D V W TII G S+ G ++A++ F +
Sbjct: 634 FVSSALVDMYGKCGCMEDAEAIFKGLFSRDTVAWNTIICGYSQHGQGQKALEAFRMMLDE 693
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGK 184
D+ P+ T + VL+ACS +G + GK
Sbjct: 694 DIDPDEVTFIGVLAACSYMGWVEEGK 719
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL T + ++ +ML N YTF L++CS G ++HAH+IK
Sbjct: 466 NALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIK 525
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ +L+ Y + + A FN + D+ TWT II+G S+ ++A+
Sbjct: 526 NSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIAGHSQTDKAEKAVKY 585
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +KPN TL S LS CS + + G+ +H+ ++++ + ++ + +A++D
Sbjct: 586 LGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHSLAIKSGHSGDVFVSSALVD 641
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
CP N +T LKA S+ + G IH IK G L D+F+ ++L+ Y ++
Sbjct: 191 CP---NEFTLATVLKASSMCSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMEL 247
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A ++F + + V+W +++G ++ G K + +FC + ++ TL +VL C++
Sbjct: 248 ADRVFFGMPEKNNVSWNALLNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCAN 307
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ + GKA+H+ S+R E + L ++D
Sbjct: 308 SGNLREGKALHSLSIRRAYELDEFLGCNLVD 338
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
++ L+ C+ +G IH +VIK G D + SL++ Y + A ++ +
Sbjct: 96 YSGMLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMR 155
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
DVV+WT +I+G G + + +C + ++ PN TL +VL A S K GK
Sbjct: 156 ERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKL 215
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH +++ ++ + +A++D
Sbjct: 216 IHLEAIKTGLLLDLFVGSALVDL 238
>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
Length = 583
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + +L + + P A+ Y ++L ++ + FT KAC+ A + G+ +
Sbjct: 71 PDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGV 130
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HAH + G D F+Q +L+ Y + A ++F+++ VV W +ISG + G
Sbjct: 131 HAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLA 190
Query: 149 KEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
AI+++ + V P++ T V+ LSAC+ G+ LG + + E N++L A+
Sbjct: 191 GRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAAL 250
Query: 206 LDF 208
++
Sbjct: 251 VNM 253
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI +Y +M + + TF L AC+ A A G E+ ++
Sbjct: 178 NAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVS 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + +L++ Y + A + F+ + +VVTWT++I+G G EA+ +
Sbjct: 238 ERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKL 297
Query: 155 FCGIDVK---PNANTLVSVLSACSSLG 178
F + + PN T V+VLSAC+ G
Sbjct: 298 FDLMRQQGPPPNDVTFVAVLSACAHAG 324
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 41/234 (17%)
Query: 12 TLSFKQLNQIHAQIIK-IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHY 67
T SF QI + K P+ + N+ LK L + +P +AI L+ ++ CP ++
Sbjct: 73 TPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTF--- 129
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + L+AC G +H V K G ++++QN ++H Y + ++ A +F +
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM 189
Query: 128 VFPDVVT-------------------------------WTTIISGLSKCGFHKEAIDMFC 156
DVVT WT++I+G +CG KEAI +F
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ VK N T+V+VL+AC+ LG+ LG IH +S R+ + N+ + N ++D
Sbjct: 250 KMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLID 303
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q + AI L+ KM N T L AC+ A G+ IH + ++G ++
Sbjct: 237 QCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVR 296
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---ID 159
I N+L+ YV + A ++F + VV+W+ +I GL+ G +EA+ +F +
Sbjct: 297 ISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 356
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
++PN T + +L ACS +G G+ A R+
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 390
>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++L Q+ + + L+N+M + YT L AC++ + +G +H VIK+
Sbjct: 193 SMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKH 252
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + + FI ++L YV ++ A ++F+ + F D+V WTT+I G ++ G +A+ +F
Sbjct: 253 GMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLF 312
Query: 156 CG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + PN+ T+ +VLSA + L + LG+ IHA S++ L N ++ NA++D
Sbjct: 313 SDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVD 367
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 6/184 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTF-TQALKACSLAHAHQKGL 86
P P+ L + +A+ L+ M CP +++ + ALKA + + G
Sbjct: 84 PDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGR 143
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H + +K G D F+ N L+ Y D+ +A ++F+ ++ +VV+WT+++SG + G
Sbjct: 144 RLHCNAVKAGGA-DGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNG 202
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
F +E + +F + V P+ T+ SVL AC+ LGS G+ +H +++ N +
Sbjct: 203 FAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITA 262
Query: 204 AVLD 207
AVLD
Sbjct: 263 AVLD 266
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ TQ+ +P +A+ L++ N T L A + G IHA +K
Sbjct: 294 TMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKL 353
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ + + N+L+ Y K + A+ IF + DVVTW ++I+G + EA+ +F
Sbjct: 354 LVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLF 413
Query: 156 CGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ V+ P+A ++V+ LSAC LG +GK H ++++ +N+ ++ A+L+
Sbjct: 414 SQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNL 469
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ ++ A+ L+++M SS + + AL AC G H + +K
Sbjct: 394 NSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVK 453
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L ++++ +LL+ Y D+ SA ++F+ + + VTW +I G G +ID+
Sbjct: 454 RAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDL 513
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+ +++PN S+LS CS G +GK
Sbjct: 514 LNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGK 546
Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA ++ +G L + + LL Y + D+ SA ++ + PD T+ + + G
Sbjct: 42 LHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAAGR 101
Query: 148 HKEAIDMFCGIDVK-PNANTLVSVLSACSSLGSR----KLGKAIHAHSLRNLNENNIILD 202
H +A+ + G+ + P A+ V +LS R + G+ +H ++++ + ++
Sbjct: 102 HADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVKAGGADGFVM- 160
Query: 203 NAVLD 207
N ++D
Sbjct: 161 NCLVD 165
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 37/194 (19%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+QS TP + LYN+M+ + N +T++ + C+ + ++G ++H V+ G+ ++
Sbjct: 6 SQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNV 65
Query: 102 FIQ----------------------------------NSLLHFYVTVKDIFSAHQIFNSV 127
F++ NSLL YV D+ A +IF+ +
Sbjct: 66 FVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEM 125
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+VV+WTT+I+G ++ G K+A+ +F + VK + LV+ LSAC+ LG KLG
Sbjct: 126 PERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGT 185
Query: 185 AIHAHSLRNLNENN 198
IH++ L+ N
Sbjct: 186 WIHSYIDERLHAGN 199
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ T++ Q + A+ L+++M + AL AC+ +
Sbjct: 124 EMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKL 183
Query: 85 GLEIHAHVIKYGHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
G IH+++ + H + + + NSL+H Y + I A+++F + ++WT++I+
Sbjct: 184 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 243
Query: 141 GLSKCGFHKEAIDMF-----CGIDV-KPNANTLVSVLSACSSLG 178
G +K G +EA+ +F G D +P+ T + VL ACS G
Sbjct: 244 GFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAG 287
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 8/208 (3%)
Query: 8 SLKPTLSFKQLNQIHAQII-----KIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
S K S+ Q+ I + + + P + L+K S + AI LY+KML +
Sbjct: 36 STKLIESYAQMGSIKSSTLVFETYQNPDSFMWGVLIKCHVWSHAFEEAILLYDKMLCNEA 95
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ F L+AC+ G ++H +IK G +D FI+ SLL Y + + A +
Sbjct: 96 QITSFVFPSVLRACAGFGDMFIGAKVHGRIIKCGFDNDPFIETSLLGLYGELGCLTDARK 155
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGS 179
+F+ + D+V+W++IIS G EA++MF VK + ++SV ACS LG
Sbjct: 156 VFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLDWVIMLSVTEACSKLGI 215
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
KL K+IH + +R + LDN++++
Sbjct: 216 LKLAKSIHGYIVRRRVDTCEALDNSLIE 243
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ QS AI L ++M LNC F A++AC+ +KG +H +I
Sbjct: 472 NSIISGFVQSGNSIEAIHLVDQMYLNC-LKITDVVFLSAIQACADMVCLEKGKWLHHKLI 530
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
YG D++I+ +L Y D+ +A +F+S+ VV+W+ +ISG G AI
Sbjct: 531 MYGVEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAIT 590
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
F + +KPN T +++LSACS GS + GK
Sbjct: 591 FFNQMVELGIKPNHITFMNILSACSHSGSVEQGK 624
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ ++N + +ACS + IH ++++ + NSL+
Sbjct: 184 ALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIE 243
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANT 166
Y + D++SA +IF ++ ++WT++I ++ G+ KEA ++F + V+PN T
Sbjct: 244 MYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPNVIT 303
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLR 192
++ VL +CS L + GK IH ++L+
Sbjct: 304 IMGVLKSCSGLSWLREGKLIHCYALK 329
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 10/179 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL + + + A+ L+ +M + ++ + A+ AC + Q G +IH + IK
Sbjct: 372 NTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIK 431
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L + F++N+L+ Y SA+ IFN + V W +IISG + G EAI +
Sbjct: 432 RCILGE-FVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHL 490
Query: 155 FCGID------VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+D +K +S + AC+ + + GK +H + E ++ ++ A+ D
Sbjct: 491 ---VDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYIETALTD 546
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH-LHDIFIQNS 106
+ A ++ KML N T LK+CS ++G IH + +K G D +
Sbjct: 283 KEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPV 342
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---N 163
L+ Y + ++ ++ +VV+W T++S ++ G +EA+ +F + + +
Sbjct: 343 LIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEALVLFVQMQKRGLMLD 402
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+L S +SAC ++GS +LG+ IH ++++
Sbjct: 403 FFSLSSAISACGNVGSLQLGRQIHGYAIK 431
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 22 HAQII-----KIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKA 75
HAQ++ P N L++ + SS+P N+I YN+ML + S + +TF ALK+
Sbjct: 57 HAQLLFDHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKS 116
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C + K LEIH VI+ G L D + SL+ Y + A ++F+ + D+V+W
Sbjct: 117 CERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSW 176
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+I S G H +A+ M+ + V ++ TLV++LS+C+ + + +G +H +
Sbjct: 177 NVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACD 236
Query: 193 NLNENNIILDNAVLDF 208
E+ + + NA++D
Sbjct: 237 IRCESCVFVSNALIDM 252
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + A+ +Y +M N + YT L +C+ A G+ +H
Sbjct: 177 NVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACD 236
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+F+ N+L+ Y + +A +FN + DV+TW ++I G G EAI
Sbjct: 237 IRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISF 296
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F V+PNA T + +L CS G K G
Sbjct: 297 FRKMVASGVRPNAITFLGLLLGCSHQGLVKEG 328
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ A+ LY++ML + YTF L+ C +G E+H HVI+
Sbjct: 164 NVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIR 223
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
YG D+ + N+L+ YV DIFSA +F+ + D ++W +ISG + E + +
Sbjct: 224 YGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRL 283
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + V P+ T+ SV+SAC +LG +LG+ +H + ++ + ++N+++
Sbjct: 284 FFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLI 338
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
++ P+ A+ Y M + + T L AC+ KG+ +H + G +
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVI 433
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG--IDV 160
+ NSL+ Y + I A ++F+ + +V++WT+II GL EA+ F + +
Sbjct: 434 VANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSL 493
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
KPN+ TLVSVLSAC+ +G+ GK IHAH+LR + L NA+LD
Sbjct: 494 KPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLD 540
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T + AC + G E+H +VIK G + ++ + NSL+ + +V A +F+ +
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F D+V+WT +ISG K G ++A++ + ++ V P+ T+ SVLSAC+ LG G
Sbjct: 358 EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI 417
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H + R + +I+ N+++D
Sbjct: 418 MLHEFADRTGLTSYVIVANSLID 440
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L + A+ + M S T+ L+ C A +G +H++V K
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + N+LL +V D+ A +F + D+ +W ++ G +K G+ EA+++
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + ++P+ T VL C L G+ +H H +R E+++ + NA++
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALI 237
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ A G EIHAH ++ G D F+ N+LL YV + A F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
NS DV +W +++G ++ G A+++F + DV P+ T S+L ACS G
Sbjct: 556 NSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 77/263 (29%)
Query: 22 HAQII--KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY----NHYTFTQAL 73
HA ++ +IP+P + NTL++ ++ P++A+ LY +ML + TF L
Sbjct: 30 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVL 89
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT-------------------- 113
+AC+ A G+++HAHV+K G D F++N+L+ + +
Sbjct: 90 RACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAV 149
Query: 114 --------------------------VKDIFS----------------AHQIFNSVVFPD 131
VKD+ S A ++F+ V D
Sbjct: 150 AWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERD 209
Query: 132 VVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
VV+W +ISG +CG H A+++F + KP+ T++S+LSAC+ G +G+ +H+
Sbjct: 210 VVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS 269
Query: 189 HSLRNLNENN---IILDNAVLDF 208
SL ++ N ++L NA++D
Sbjct: 270 -SLSDMFSRNGFPVVLGNALIDM 291
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N ++ + + +A+ L+ +M + T L AC+ +
Sbjct: 204 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 263
Query: 85 GLEIHAHVIKYGHLHDIF--------IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
G +H+ L D+F + N+L+ Y + SAH++F S+ DV TW
Sbjct: 264 GQRLHSS------LSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWN 317
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+I+ GL+ G E+IDMF + V+P+ T V+VL ACS G G+
Sbjct: 318 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGR 368
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC----SLAHAHQKGLE 87
++ N L + L + + + LY +M S + +T+T LKAC L QKG E
Sbjct: 136 YVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKE 195
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHAH++++G+ + + +L+ Y + A +F+ + +VV+W+ +I+ +K G
Sbjct: 196 IHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGK 255
Query: 148 HKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
EA+++F + D PN+ T+VSVL AC++ + + GK IHA+ LR
Sbjct: 256 PYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILR 305
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++ ++ P A+ L+ +M LN S N T L+AC+ A ++G IHA++
Sbjct: 244 SAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYI 303
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++ G + + ++L+ Y + S IF+ + DVV W ++IS G+ ++AI
Sbjct: 304 LRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAI 363
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
+F + P+ + +SVL ACS G + GK +
Sbjct: 364 KIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKL 400
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 22 HAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H+ +IP P ++ NT+++ S TP+ A+ ++++ML+ + YTFT ALK+C
Sbjct: 62 HSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSF 121
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
++G +IH HV+K G D+FIQN+L+H Y + I A + + ++ DVV+W ++
Sbjct: 122 SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALL 181
Query: 140 SGLSKCGFHKEAIDMF 155
S ++ G + A +F
Sbjct: 182 SAYAERGLMELACHLF 197
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + + L+ M + ++ T L AC+ A +G +HA++ K
Sbjct: 240 NAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDK 299
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ +L+ Y I A ++FNS + D+ TW +IISGLS G + A+ +
Sbjct: 300 NGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQI 359
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKA-----IHAHSLR 192
F + V KPN T V VLSACS G G+ +H H ++
Sbjct: 360 FSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQ 405
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 20/211 (9%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKML 58
F LKS ++ QIH ++K I NTL+ L ++A L ++ML
Sbjct: 111 FTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRML 170
Query: 59 NCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
S+N A A+A + +E+ H+ ++ N ++ YV V +
Sbjct: 171 ERDVVSWN---------ALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLL 221
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSAC 174
A ++F +VV+W +I+G S G E + +F + VKP+ TLVSVLSAC
Sbjct: 222 EEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSAC 281
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ +G+ G+ +HA+ +++N I +D V
Sbjct: 282 AHVGALSQGEWVHAY----IDKNGISIDGFV 308
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVV 128
A A S++ HQ HAH++K G +H F + L+ T + I AH IF+ +
Sbjct: 14 AEMATSISELHQA----HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP 69
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
P+ W TII + + A+ +F + V P+ T L +C S + G+
Sbjct: 70 NPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQ 129
Query: 186 IHAHSLRNLNENNIILDNAVL 206
IH H L+ +++ + N ++
Sbjct: 130 IHGHVLKTGLGDDLFIQNTLI 150
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 77/263 (29%)
Query: 22 HAQII--KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY----NHYTFTQAL 73
HA ++ +IP+P + NTL++ ++ P++A+ LY +ML + TF L
Sbjct: 30 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVL 89
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT-------------------- 113
+AC+ A G+++HAHV+K G D F++N+L+ + +
Sbjct: 90 RACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAV 149
Query: 114 --------------------------VKDIFS----------------AHQIFNSVVFPD 131
VKD+ S A ++F+ V D
Sbjct: 150 AWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERD 209
Query: 132 VVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
VV+W +ISG +CG H A+++F + KP+ T++S+LSAC+ G +G+ +H+
Sbjct: 210 VVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS 269
Query: 189 HSLRNLNENN---IILDNAVLDF 208
SL ++ N ++L NA++D
Sbjct: 270 -SLSDMFSRNGFPVVLGNALIDM 291
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N ++ + + +A+ L+ +M + T L AC+ +
Sbjct: 204 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 263
Query: 85 GLEIHAHVIKYGHLHDIF--------IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
G +H+ L D+F + N+L+ Y + SAH++F S+ DV TW
Sbjct: 264 GQRLHSS------LSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWN 317
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+I+ GL+ G E+IDMF + V+P+ T V+VL ACS G G+
Sbjct: 318 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGR 368
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 17 QLNQIHAQIIKIPQPHI--LNTLLKLLTQSS--TPQNAIPLYNKMLNCPSSYNHYTFTQA 72
L++ H +IP P + N L++ + SS + + LY +ML + N+YTF A
Sbjct: 72 HLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKACS H G IH H I G D+F+ +LL YV + A IF ++ D+
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLGSRKLGKAIH 187
V W +++G + G + A+ + ++PNA+TLV++L + G+ G ++H
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251
Query: 188 AHSLR-----NLNENNIILDNAVL 206
A+ +R N N + + D +L
Sbjct: 252 AYCIRACLHPNRNSKSKLTDGVLL 275
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L+ Q+ + A ++ KM C + T + ACS A Q G H VI
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 469
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I N+L+ Y I + Q+FN + D+V+W T+I+G G KEA +
Sbjct: 470 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATAL 529
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ P+ T + +LSACS G
Sbjct: 530 FLEMNNLGFPPDGVTFICLLSACSHSG 556
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ AL+AC+ + G ++HA + K G D+ NSLL Y I A +F+ +
Sbjct: 342 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D V+++ ++SG + G +EA +F + +V+P+A T+VS++ ACS L + + G+
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461
Query: 185 AIHAHS-LRNLNENNIILDNAVLD 207
H +R L I NA++D
Sbjct: 462 CSHGSVIIRGLASETSIC-NALID 484
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSAC 174
AH +F+ + PDV T+ +I S A + V PN T L AC
Sbjct: 76 AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+L G+AIH H++ + ++ + A+LD
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLD 168
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 17 QLNQIHAQIIKIPQPHI--LNTLLKLLTQSS--TPQNAIPLYNKMLNCPSSYNHYTFTQA 72
L++ H +IP P + N L++ + SS + + LY +ML + N+YTF A
Sbjct: 72 HLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKACS H G IH H I G D+F+ +LL YV + A IF ++ D+
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLGSRKLGKAIH 187
V W +++G + G + A+ + ++PNA+TLV++L + G+ G ++H
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251
Query: 188 AHSLR-----NLNENNIILDNAVL 206
A+ +R N N + + D +L
Sbjct: 252 AYRIRACLHSNRNSKSKLTDGVLL 275
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L+ Q+ + A ++ KM C + T + ACS A Q G H VI
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 469
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I N+L+ Y I + Q+FN + D+V+W T+I+G G KEA +
Sbjct: 470 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATAL 529
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ P+ T + +LSACS G
Sbjct: 530 FLEMNNLGFPPDGVTFICLLSACSHSG 556
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ AL+AC+ + G ++HA + K G D+ NSLL Y I A +F+ +
Sbjct: 342 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D V+++ ++SG + G +EA +F + +V+P+A T+VS++ ACS L + + G+
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461
Query: 185 AIHAHS-LRNLNENNIILDNAVLD 207
H +R L I NA++D
Sbjct: 462 CSHGSVIIRGLASETSIC-NALID 484
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSAC 174
AH +F+ + PDV T+ +I S A + V PN T L AC
Sbjct: 76 AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+L G+AIH H++ + ++ + A+LD
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLD 168
>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + + L+N+M N YT + AC+ A +G +H +VIK G + F
Sbjct: 262 QNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSF 321
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---ID 159
+ LL Y DI A +F+ + D+V+WT +I G ++ G+ +EA+ +F D
Sbjct: 322 LVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKD 381
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ PN T SVLSAC+ GS +G+++H ++ L + +NA++D
Sbjct: 382 LLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIK-LGSEDATFENALVD 428
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q P+ A+ L+ N T + L AC+ + G +H IK G D
Sbjct: 363 QRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGS-EDAT 421
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+N+L+ Y I A +F +V DV+ W +IISG ++ G+ EA+++F +
Sbjct: 422 FENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDS 481
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
V P+A TLVSVLSAC+S+G+ ++G ++H ++++
Sbjct: 482 VYPDAITLVSVLSACASVGAYRVGSSLHGYAIK 514
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYN-KMLNCPSSYNHYTFTQALKACSLAHAHQK 84
I+ P + +++ + + + YN ++ C + Y++ F+ LKACS +
Sbjct: 144 IRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDE 203
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H ++K G D F+ L+ Y +++ + ++F+ ++ +VV WT++I G +
Sbjct: 204 GRKLHCQIVKVGS-PDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQ 262
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
KE + +F + V+ N TL S+++AC+ LG+ GK +H + +++ + N L
Sbjct: 263 NDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL 322
Query: 202 DNAVLDF 208
+LD
Sbjct: 323 VTPLLDL 329
Score = 39.3 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 30/168 (17%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ TQ+ A+ L+++M + + T L AC+ A++ G +H + IK
Sbjct: 455 NSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIK 514
Query: 95 YGHLHDIFIQNSLLHFYVTVKD-------IFS------AH---------------QIFNS 126
G L SL F +K+ IF+ +H Q++N
Sbjct: 515 AGLLSGRDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNF 574
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 174
V P + + ++ L++ G +EA+D I ++P+ + L + L C
Sbjct: 575 V--PSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGC 620
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + + L+N+M N YT + AC+ A +G +H +VIK G + F
Sbjct: 215 QNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSF 274
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---ID 159
+ LL Y DI A +F+ + D+V+WT +I G ++ G+ +EA+ +F D
Sbjct: 275 LVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKD 334
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ PN T SVLSAC+ GS +G+++H ++ L + +NA++D
Sbjct: 335 LLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIK-LGSEDATFENALVD 381
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 5/170 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q P+ A+ L+ N T + L AC+ + G +H IK G D
Sbjct: 316 QRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGS-EDAT 374
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+N+L+ Y I A +F +V DV+ W +IISG ++ G+ EA+++F +
Sbjct: 375 FENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDS 434
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLDF 208
V P+A TLVSVLSAC+S+G+ ++G ++H ++++ L ++ + A+L+F
Sbjct: 435 VYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNF 484
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYN-KMLNCPSSYNHYTFTQALKACSLAHAHQK 84
I+ P + +++ + + + YN ++ C + Y++ F+ LKACS +
Sbjct: 97 IRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDE 156
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H ++K G D F+ L+ Y +++ + ++F+ ++ +VV WT++I G +
Sbjct: 157 GRKLHCQIVKVGS-PDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQ 215
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
KE + +F + V+ N TL S+++AC+ LG+ GK +H + +++ + N L
Sbjct: 216 NDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL 275
Query: 202 DNAVLDF 208
+LD
Sbjct: 276 VTPLLDL 282
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ TQ+ A+ L+++M + + T L AC+ A++ G +H + IK
Sbjct: 408 NSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIK 467
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G L +++ +LL+FY D SA IF+ + + +TW+ +I G G +++
Sbjct: 468 AGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLE 527
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + ++PN ++LSACS G
Sbjct: 528 LFGDMLKEKLEPNEVIFTTILSACSHSG 555
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI ++ MLN N +T LKACS A + G ++H+ V+K D+F+ SL+
Sbjct: 268 AIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMD 327
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANT 166
Y +I ++F+ + + VTWT+II+ ++ GF +EAI +F + + N T
Sbjct: 328 MYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRVMKRRHLIANNLT 387
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+VS+L AC S+G+ LGK +HA ++N E N+ + + ++
Sbjct: 388 VVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLV 427
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N F L CS + G ++H +++K G + ++ +++SL++FY ++ SA + F
Sbjct: 183 NERMFVCLLNLCSRRSEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALRAF 241
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + DV++WT +IS S+ G +AI MF G+ PN T+ S+L ACS + +
Sbjct: 242 DMMEEKDVISWTAVISACSRKGHGNKAIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIR 301
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +H+ ++ + + ++ + +++D
Sbjct: 302 FGRQVHSLVVKRMIKTDVFVGTSLMD 327
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N+ T L+AC A G E+HA +IK +++I ++L
Sbjct: 367 EEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTL 426
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + A + + DVV+WT +ISG S G EA+D + V+PN
Sbjct: 427 VWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNP 486
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S L AC++ S +G++IH+ + +N +N+ + +A++
Sbjct: 487 FTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALI 528
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
A+ +M+ N +T++ ALKAC+ + + G IH+ K L ++F+ ++
Sbjct: 467 ESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 526
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---N 163
L+H Y + A ++F+S+ ++V+W +I G ++ GF +EA+ + ++ + +
Sbjct: 527 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVD 586
Query: 164 ANTLVSVLSACSSL 177
++LS C +
Sbjct: 587 DYIFATILSTCGDI 600
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
IHA +K I+ N+L+ V + D+ A ++F+S+ + VTWT +I G K G
Sbjct: 103 RIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDGYLKFG 162
Query: 147 FHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
EA +F GI N V +L+ CS +LG+ +H + ++ + N+I+
Sbjct: 163 LEDEAFSLFEDYVKHGIRF-TNERMFVCLLNLCSRRSEFELGRQVHGNMVK-VGVGNLIV 220
Query: 202 DNAVLDF 208
+++++ F
Sbjct: 221 ESSLVYF 227
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 28 IPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IPQP I NT++K ++ + PQN + +Y ML + +TF LK + A Q G
Sbjct: 67 IPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYG 126
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ H +K+G ++F+Q + +H + + + A ++F+ +VVTW ++SG ++
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
K++ +F ++ V PN+ TLV +LSACS L + GK I+ + + E N+IL+
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246
Query: 203 NAVLD 207
N ++D
Sbjct: 247 NVLID 251
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + +T L AC+ A + G + ++ K +D F+ N+L+
Sbjct: 324 ALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALID 383
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y ++ A ++F + D TWT +I GL+ G +EA+ MF + + P+ T
Sbjct: 384 MYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEIT 443
Query: 167 LVSVLSACSSLGSRKLGKA 185
+ VL AC+ G + G++
Sbjct: 444 YIGVLCACTHAGMVEKGQS 462
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 42/183 (22%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY--GHL--HDIFIQNSLLHFYVTVKDIF 118
S N T L ACS K LE H+ KY G + ++ ++N L+ + ++
Sbjct: 205 SPNSVTLVLMLSACS----KLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMD 260
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCG--------FHK--------------------- 149
A +F+++ DV++WT+I++G + G F +
Sbjct: 261 EAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNR 320
Query: 150 --EAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
EA+ +F + +VKP+ T+VS+L+AC+ LG+ +LG+ + + +N +N+ + NA
Sbjct: 321 FIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNA 380
Query: 205 VLD 207
++D
Sbjct: 381 LID 383
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHF---YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+IH+H IK G D Q ++ F + + K I+ A Q+F+++ P + W T+I G S
Sbjct: 25 QIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIY-ARQVFDAIPQPTLFIWNTMIKGYS 83
Query: 144 KCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ + + M+ ++KP+ T +L + + + GK + H++++ ++N+
Sbjct: 84 RINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLF 143
Query: 201 LDNAVL 206
+ A +
Sbjct: 144 VQKAFI 149
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 36/194 (18%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I NT+L+ L SS + + +Y +M++ N YTF LK+C+ + ++G +I
Sbjct: 46 PNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQI 105
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYV-------------------------------TVKDI 117
HA V+K G D + SL+ Y + D+
Sbjct: 106 HAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDV 165
Query: 118 FSAHQIFNSVVFPDVVTWTTIISG-LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 173
SA ++F+ + DVV+W +I+G + CG+ +EA+++F + +V+P+ TLVSVLSA
Sbjct: 166 RSARKVFDXITERDVVSWNAMITGYVENCGY-EEALELFKEMMRTNVRPDEGTLVSVLSA 224
Query: 174 CSSLGSRKLGKAIH 187
C+ GS +LG+ IH
Sbjct: 225 CAQSGSIELGREIH 238
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A G IH ++ K
Sbjct: 286 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDK 345
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +AHQ+FNS++ + +W +I G + G A
Sbjct: 346 RLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAF 405
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
D+F + ++P+ TLV +LSACS G LG+ I ++ N
Sbjct: 406 DLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYN 451
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ +M+ + T L AC+ + + + G EIH V
Sbjct: 184 NAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDD 243
Query: 95 Y-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G + I N+ + Y D+ A +F + DVV+W T+I G + +KEA+
Sbjct: 244 HHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALL 303
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+F + PN T++SVL AC+ LG+ +G+ IH +
Sbjct: 304 LFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVY 342
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 10/192 (5%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P +I N+++K + S +P A+ +Y +M + +H+TF LKACSL + + G
Sbjct: 65 IDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLG 124
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H ++K G D++ +LL Y D+ +A ++F+ + +VV WT++I+G
Sbjct: 125 QCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISN 184
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHS----LRNLNEN- 197
EA+ ++ ++ V PN T+V+VL AC+ G+ +H + L N
Sbjct: 185 DCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNS 244
Query: 198 --NIILDNAVLD 207
N+IL A++D
Sbjct: 245 NFNVILATAIVD 256
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q A+ L++ M + TF + AC+ A G +HA+V K D
Sbjct: 265 QYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTA 324
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
I +L+ Y D A Q+F+ + DV WT++I GL+ G +EA+ F +
Sbjct: 325 IGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDT 384
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ P+ T + VLSACS +G + GK H S++N++
Sbjct: 385 ALIPDEITYIGVLSACSHVGKVEDGKN-HFISMKNVH 420
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 35/184 (19%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+ +++ +L+ + P A+ +Y M + N T L AC+ + G
Sbjct: 166 IPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAG 225
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H + G D F ++ FN V+ T I+ +KC
Sbjct: 226 RWVHDRTGQMG------------------LDPFQSNSNFN------VILATAIVDMYAKC 261
Query: 146 GFHK-----EAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNE 196
+++ EA+D+F + + P+ T + V+ AC+ LG+ G+A+HA+ S NL +
Sbjct: 262 AYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTD 321
Query: 197 NNII 200
+ I
Sbjct: 322 DTAI 325
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H +I + D+ + L+ F Y ++ A +FN + P + W ++I G S
Sbjct: 24 LHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSIS 83
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
EA+ M+ + K P+ T VL ACS + LG+ +H
Sbjct: 84 ESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVH 128
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+P I NTL K ++ P ++ LY KM + + +T+ +KA S
Sbjct: 68 EMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPC 127
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ +HAHV+K G + L+ Y+ ++ SA +F S+ D+V W I+ +
Sbjct: 128 GVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQ 187
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G A++ F C V+ ++ T+VS+LSAC LGS +G+ I+ + + E NII+
Sbjct: 188 TGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIV 247
Query: 202 DNAVLD 207
+NA LD
Sbjct: 248 ENARLD 253
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 4/168 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N + + Q+ A+ +NKM ++ +T L AC + G EI+ K
Sbjct: 179 NAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARK 238
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+I ++N+ L ++ +A +F+ + +VV+W+T+I G + G EA+ +
Sbjct: 239 EEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALAL 298
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
F + ++PN T + VLSACS G GK + +R LN+ N+
Sbjct: 299 FTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVR-LNDKNL 345
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA VI+ G + LL V V D+ A Q+F+ + P + W T+ G +
Sbjct: 29 KIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQ 88
Query: 147 FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
E++ ++ + V+P+ T V+ A S LG G ++HAH L+N
Sbjct: 89 LPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKN 138
>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 559
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ + +A+ L++ ML +HYT ALKAC + IH+ +IK
Sbjct: 183 NALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIK 242
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS-KCGFHKEAID 153
G+ + + SL++ Y + + SA I++S+ PD+V+ T +ISG + + ++A++
Sbjct: 243 LGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAME 302
Query: 154 MFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+FC I K + L SVL C+S+ S + G IHA+ + +I LDNA++D
Sbjct: 303 LFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDM 360
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ L+ K+ + + L C+ + + G +IHA++ K + DI + N+L
Sbjct: 298 EDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNAL 357
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + A + F+ + + +V++WT++I+ + G ++A+ +F + V+PN
Sbjct: 358 VDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPND 417
Query: 165 NTLVSVLSACSSLG 178
T +S+LSAC G
Sbjct: 418 VTFLSLLSACGHCG 431
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
++ P+ A+ L+ M + N +T+ A AC+ A + G ++HA K D+
Sbjct: 89 ARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDM 148
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+Q++L+ ++ + A Q+F + DVV+W +I G + G +A+ +F +
Sbjct: 149 FVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKE 208
Query: 159 DVKPNANTLVSVLSACSSLG 178
+ P+ TL S L AC +G
Sbjct: 209 AMIPDHYTLGSALKACGIVG 228
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY-GHLHDIFIQNSLLHF 110
PLY+ +L C C + A ++G +H V D+ + L+ F
Sbjct: 12 PLYSSLLQC---------------CISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIF 56
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTL 167
Y D+ +A ++F+ + VV+WT ++SG ++ G +EA+++F +PN T
Sbjct: 57 YARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTY 116
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S SAC+ G + G+ +HA + + ++ + +A++D
Sbjct: 117 GSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDM 157
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 81/300 (27%), Positives = 120/300 (40%), Gaps = 105/300 (35%)
Query: 13 LSFKQLNQIHAQIIKIPQPHI-------------------------------------LN 35
LS +QL +I AQII P P I N
Sbjct: 35 LSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYN 94
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQALKACSLAHAHQKGLEIHAHVI 93
LLK +Q + I +N L P++ N YTFT LKAC+ +G ++H V
Sbjct: 95 ALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVT 154
Query: 94 KYGHLHDIFIQNSLLHFY---------------VTVKDIFS----------------AHQ 122
KYG ++F++NSL+ Y + V+D+ S A
Sbjct: 155 KYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARM 214
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK--------------------- 161
+F+ ++ ++V+W+T+ISG ++ G +EA +F + ++
Sbjct: 215 VFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADA 274
Query: 162 --------------PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
PN TLVSVLSAC+ LG+ LGK IH RN E + L NA+ D
Sbjct: 275 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 334
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q+ +AI L+ +M + + N T L AC+ A G IH +
Sbjct: 259 NAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIR 318
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ +F+ N+L Y + A +F+ + DV++W+ II GL+ G+ EA +
Sbjct: 319 RNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFN 378
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
F + ++PN + + +L+AC+ G
Sbjct: 379 FFAEMIEDGLEPNDISFMGLLTACTHAG 406
Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 8/169 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK--YGHLHDIFIQN 105
Q + PL L YNH L C+ + ++ EI A +I + I
Sbjct: 3 QRSSPLLVITLAVLHDYNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAV 62
Query: 106 SLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 164
+ + ++ + IFN + FP++ + ++ S+ I F V PNA
Sbjct: 63 KFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNA 122
Query: 165 N-----TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T SVL AC+ L G+ +H + E+N+ + N+++D
Sbjct: 123 PNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDL 171
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
C N Y ++AC + G ++H++VIK G D+++ SL+ Y +I
Sbjct: 136 CVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDK 195
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A +F+ +V VTWT II+G +K G + ++ +F + +V P+ L S+L+ACS
Sbjct: 196 ARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSV 255
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
LG K GK IHA+ LR+ + ++ N ++DF
Sbjct: 256 LGYLKGGKQIHAYVLRSETKMDVSTYNVLIDF 287
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 91/169 (53%), Gaps = 3/169 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T+S + ++ L+N M+ + Y + L ACS+ + G +IHA+V++ D+
Sbjct: 219 TKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDV 278
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM---FCGI 158
N L+ FY + + +F+ + ++++WTT+I+G + + EA+++ +
Sbjct: 279 STYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRM 338
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
KP+ SVL++C S+ + + G+ IH++ ++ E++ + NA++D
Sbjct: 339 GWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALID 387
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+L + A LY+ + N +TF A S+ + G + H V
Sbjct: 513 VWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQV 572
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G D FI N+L+ Y + A +IF+S V+ D W ++IS ++ G +EA+
Sbjct: 573 MKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEAL 632
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
MF + ++ PN T VSVLSACS +G
Sbjct: 633 RMFETMVSNNINPNYVTFVSVLSACSHVG 661
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+S A+ L +M + Y + L +C A Q G +IH++VIK
Sbjct: 314 TMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKV 373
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
HD F+ N+L+ Y + A ++F+ V VV + +I G S+ G+ A+++F
Sbjct: 374 CLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVF 433
Query: 156 CGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHA 188
+ +K P+ T VS+L ++L +L K IH
Sbjct: 434 QEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHG 469
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL----EIHAHVIKYGHLHDIFIQNSL 107
P ML SS N +AL LA K + ++H V+ +G +D+F+ N L
Sbjct: 22 PNVQPMLPSFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLL 81
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV----KPN 163
LH Y + +F A +F+ + ++V+W++++S ++ G++++A+ F K N
Sbjct: 82 LHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLN 141
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
L S++ AC + G +H++ +++
Sbjct: 142 EYILASIIRACVQRDGGEPGSQVHSYVIKS 171
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ +M S + TF L + Q +IH +IKYG D F ++L+
Sbjct: 429 ALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALID 488
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANT 166
Y I A +F D+V W ++ SG + +EA ++ + + +PN T
Sbjct: 489 VYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFT 548
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ +A S L S G+ H ++ E++ + NA++D
Sbjct: 549 FAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVD 589
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 31/150 (20%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + Q + A+ ++ M++ + N+ TF L ACS + GL+ + + +
Sbjct: 616 NSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMAR 675
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
YG + P + + ++++ L + G EA +
Sbjct: 676 YG-------------------------------IEPGIEHYASVVTLLGRAGRLTEAREF 704
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ ++P A S+LSAC G+ +L K
Sbjct: 705 IEKMTIRPAALVWRSLLSACRVFGNVELAK 734
>gi|414868050|tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 98/177 (55%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
T++ Q A+ ++ M++ N +T ALKAC+ A + G ++H ++K
Sbjct: 10 TTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVK 69
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ +DI + ++L+ Y ++F A +F+ + + +TWT++ISG ++ G +EA+ +
Sbjct: 70 KLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGEEAVLL 129
Query: 155 FCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + ++ N T+VS+LSAC S+ S GK +HA ++N E N+ + + ++ F
Sbjct: 130 FRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWF 186
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ + + +++ QS + A+ L+ KM NH T L AC +
Sbjct: 101 KMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYH 160
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G E+HA +IK ++ I ++L+ FY + A +I ++ D V WT +ISG +
Sbjct: 161 GKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMISGYNN 220
Query: 145 CGFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G + EA +D V PN T S L AC+ L + + G+ IH + +N+ +
Sbjct: 221 LGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVNKTQAFSNVFV 280
Query: 202 DNAVLD 207
+++D
Sbjct: 281 GCSLID 286
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ A Q G IH V K ++F+ SL+ Y+ + A ++F
Sbjct: 242 NTYTYSSALKACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVF 301
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+++ ++VTW +I+G ++ G +EA+
Sbjct: 302 DAMPEHNLVTWKVMITGFTQNGRSEEAL 329
Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
DV++WTT+I+ + G +A+ MF + +PN T+ S L AC+ + + GK +H
Sbjct: 5 DVISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLH 64
Query: 188 AHSLRNLNENNIILDNAVL 206
++ L + +I + +A++
Sbjct: 65 GAIVKKLYKYDIHVGSALV 83
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 114/205 (55%), Gaps = 7/205 (3%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN 65
+L PT S+ ++ H +I I+ N + + +S++P A L+ ++L +
Sbjct: 72 TLNPTTSY--MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPD 129
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
YTF+ LKAC+ + A ++G+ +H +K G H+I+I +L++ Y D+ +A +F+
Sbjct: 130 DYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFD 189
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL 182
+ P +V++ II+G ++ EA+ +F + +++P T++SV+ +C+ LG+ L
Sbjct: 190 EMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDL 249
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
GK IH + + + + ++ A++D
Sbjct: 250 GKWIHEYVKKKGFDKYVKVNTALID 274
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
+N ++ QP I+ N ++ +SS P A+ L+ ++ T +
Sbjct: 180 DMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIM 239
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
+C+L A G IH +V K G + + +L+ + + A IF + D
Sbjct: 240 SCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQA 299
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
W+ +I + G +AI MF + V+P+ T + +L ACS G + G+
Sbjct: 300 WSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRG 353
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ ++ L+++M N++TF LKAC G +H K +L ++F+ L
Sbjct: 228 EESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVEL 287
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y+ D+ A Q+F + DV+ W+ +I+ ++ +EAI+MFC + V PN
Sbjct: 288 IDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQ 347
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
TL S+L AC+SL +LG IH H ++ + N+ + NA++D
Sbjct: 348 FTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMD 390
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 3/168 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
QS + AI ++ +M N +T L+AC+ Q G +IH HV+K G ++F
Sbjct: 324 QSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVF 383
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ N+L+ Y + ++ Q+F+ V+W T+I G + G ++A+ +F +
Sbjct: 384 VSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQ 443
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V+ T SVL AC+ + + + G IH+ S++ + + N ++ NA++D
Sbjct: 444 VQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALID 491
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ + A+ L+ ML C T++ L+AC+ A + G +IH+ +K
Sbjct: 417 NTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVK 476
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + + N+L+ Y +I A +F+ + D V+W +ISG S G + EA+
Sbjct: 477 TIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKT 536
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
F + + KP+ T V +LSACS+ G G+A
Sbjct: 537 FESMLETECKPDKVTFVGILSACSNAGLLDRGQA 570
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL++ +Q AI L++++ N + F+ LK A + G +HA V K
Sbjct: 115 TLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKL 174
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D F+ +L+ Y A Q+F+++ + D+V+WT +++ + +E++ +F
Sbjct: 175 GFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLF 234
Query: 156 CGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ + KPN T SVL AC L +GKA+H + +
Sbjct: 235 SRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFK 274
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 21 IHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
+ +++++ P NT L ++TQ S L + + +N Y + L++C
Sbjct: 5 LRSKLLQHPNHCKSNTALCIITQRSF------LAQRTSHSSPEFNTYIYGSLLQSCIRNG 58
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
G +H +IK G+ D+F N LL+FYV + A ++F+ + + V++ T+I
Sbjct: 59 DCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQ 118
Query: 141 GLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G S+C EAI +F G + N +VL S KLG ++HA
Sbjct: 119 GYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHA 169
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 26 IKIPQPHILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
I+ P + N L++ +S+ Q+AI LY++ML S + +TF LKAC+ A
Sbjct: 86 IENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALS 145
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G +IHA ++K G D++I NSL+HFY T + A +F+ + +V+W +I
Sbjct: 146 EGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 144 KCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ G A+++F + +P+ T+ S+ +AC+ +GS LG N+++L
Sbjct: 206 RFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIV-----------NDVLL 254
Query: 202 DNAVLD 207
+ +++D
Sbjct: 255 NTSLVD 260
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP- 61
LK+ + + QIHAQI+K+ +I N+L+ A ++++M
Sbjct: 135 LKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSL 194
Query: 62 SSYN-----HYTFTQALKACSLAHAHQKGLEIHAHVIK-------------YGHLHDIFI 103
S+N F + A +L QK E + I+ G ++D+ +
Sbjct: 195 VSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIVNDVLL 254
Query: 104 QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGIDVK- 161
SL+ Y + A Q+F+ + DV +W ++I G S G A++ F C + +
Sbjct: 255 NTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEK 314
Query: 162 --PNANTLVSVLSACSSLGSRKLGK 184
PNA T V VLSAC+ G G+
Sbjct: 315 LMPNAITFVGVLSACNHGGLVSEGR 339
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 87 EIHAHVIKYG---HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
++HA I+ H + F+ + +LHF ++ D+ A ++F+ + P+ W +I +
Sbjct: 44 QLHAQTIRTTSSHHPNTFFLYSRILHF-SSLHDLRYAFRVFHQIENPNSFMWNALIRACA 102
Query: 144 KCGFHKE-AIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ K+ AI ++ + V + +T VL AC+ L + G+ IHA L+ +++
Sbjct: 103 RSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSD 162
Query: 199 IILDNAVLDF 208
+ ++N+++ F
Sbjct: 163 VYINNSLVHF 172
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 98/177 (55%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
T++ Q A+ ++ M++ N +T ALKAC+ A + G ++H ++K
Sbjct: 259 TTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVK 318
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ +DI + ++L+ Y ++F A +F+ + + +TWT++ISG ++ G +EA+ +
Sbjct: 319 KLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGEEAVLL 378
Query: 155 FCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + ++ N T+VS+LSAC S+ S GK +HA ++N E N+ + + ++ F
Sbjct: 379 FRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWF 435
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF LK+C + G ++H V+K G ++ + +++ HFY D+ +A +F
Sbjct: 189 NSLTFVCLLKSCGERCDARLGQQVHCCVVK-GGWSNVIVDSAITHFYAQCGDVAAASTVF 247
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + DV++WTT+I+ + G +A+ MF + +PN T+ S L AC+ + +
Sbjct: 248 DRMASRDVISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALR 307
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GK +H ++ L + +I + +A++
Sbjct: 308 FGKQLHGAIVKKLYKYDIHVGSALV 332
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ + + +++ QS + A+ L+ KM NH T L AC +
Sbjct: 350 KMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYH 409
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G E+HA +IK ++ I ++L+ FY + A +I ++ D V WT +ISG +
Sbjct: 410 GKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMISGYNN 469
Query: 145 CGFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G + EA +D V PN T S L AC+ L + + G+ IH + +N+ +
Sbjct: 470 LGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVNKTQAFSNVFV 529
Query: 202 DNAVLDF 208
+++D
Sbjct: 530 GCSLIDM 536
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ A Q G IH V K ++F+ SL+ Y+ + A ++F
Sbjct: 491 NTYTYSSALKACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVF 550
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+++ ++VTW +I+G ++ G +EA+
Sbjct: 551 DAMPEHNLVTWKVMITGFTQNGRSEEAL 578
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 21/202 (10%)
Query: 17 QLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC---PSSYNHYTFTQAL 73
+L+++ A + K + L + L+ P + IP K C PS + L
Sbjct: 43 KLHRVRAHVFK-SKNQSLRSQSHLVDSHGGPADKIP--RKDFPCSAAPSLPDAEAVAFWL 99
Query: 74 KACSLAHAHQKGLEIH-AHVIKYGHLHD--IFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ C ++ L++ AH + L +F+ N+L+ YV ++ +A ++F+ +
Sbjct: 100 RFC------RRELDVRRAHAVALRSLGSLGVFVSNNLISAYVRFDEVANARKVFDEMPER 153
Query: 131 DVVTWTTIISGLSKCGFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+V+WT +++G K G H E +DM V+ N+ T V +L +C +LG+ +
Sbjct: 154 SIVSWTAMMNGYQKLGCHGEVARLLMDMLIA-GVQGNSLTFVCLLKSCGERCDARLGQQV 212
Query: 187 HAHSLRNLNENNIILDNAVLDF 208
H ++ +N+I+D+A+ F
Sbjct: 213 HCCVVKG-GWSNVIVDSAITHF 233
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 37/213 (17%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
+L + H ++P+P ++ ++ Q +NAI ++ +M++ +T T L
Sbjct: 94 RLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLA 153
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY------VTVKDIFSAHQI----- 123
+C+ G ++H+ V+K+G I + NSLL+ Y VT K +F ++
Sbjct: 154 SCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSS 213
Query: 124 --------------------FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----D 159
F ++ DVV+W +ISG ++ GF +EA+D+F +
Sbjct: 214 WNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSS 273
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
KP+ TL S LSAC++L + KLGK IHAH +R
Sbjct: 274 SKPDKFTLASALSACANLENLKLGKQIHAHIIR 306
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 37/209 (17%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q + A+ +++KML + S + +T AL AC+ + G +IHAH+I
Sbjct: 246 NAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHII 305
Query: 94 K-----YGHLH----------------------------DIFIQNSLLHFYVTVKDIFSA 120
+ +G + D+ +LL YV + DI A
Sbjct: 306 RTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPA 365
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177
+IF+S+ DVV WT +I G + GF+++A+++F + KPN TL ++LS SSL
Sbjct: 366 RRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSL 425
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVL 206
S G+ IHA + R+ N +++ + NA++
Sbjct: 426 ASLDHGRQIHASATRSGNASSVSVSNALI 454
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ Q+A+ L+ M+ N+YT L S + G +IHA + G+ +
Sbjct: 389 QNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVS 448
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ N+L+ Y I A +FN + + D +TWT++I L++ G +EA+ +F +
Sbjct: 449 VSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLEN 508
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+KP+ T V VLSAC+ +G + G++ +
Sbjct: 509 GIKPDHITYVGVLSACTHVGLVEQGRSYY 537
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 34/158 (21%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFY---------------VTVKDIFS---------- 119
G IHA +IK G +F+ N+L++FY + VK +FS
Sbjct: 32 GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91
Query: 120 ------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 170
AH++F + PD V+WT +I G ++ G + AI MF + DV P TL +V
Sbjct: 92 GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L++C+++ +G+ +H+ +++ + I + N++L+
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNM 189
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 4/182 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLE 87
P + L+K + A+ LY++M+ + +++ F LKACS G +
Sbjct: 62 PDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGK 121
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H VIK G D ++ SLL Y + + A + F+++ DVV W++I+ + G
Sbjct: 122 VHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQ 181
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
E +DMF + V+P++ T++SV ACS LGS +LG+++H + +R E+N L+N+
Sbjct: 182 ASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNS 241
Query: 205 VL 206
++
Sbjct: 242 LI 243
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 6/195 (3%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L H I + IL NTL+ + T++ P+ A+ L+ +M + Y+ +L A
Sbjct: 354 LRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSA 413
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C Q G +IH ++IK G+ +D F+QN+L+ Y + SA+++F + +VTW
Sbjct: 414 CGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTW 472
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
++I G S+ G+ EAI +F + VK + T +SV+ ACS LG + GK +H +
Sbjct: 473 NSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIM 532
Query: 193 NLNENNIILDNAVLD 207
+ LD A+ D
Sbjct: 533 YGLRKDSYLDTALTD 547
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
Q+ + ++++M++ + T +ACS + + G +H +V++ +
Sbjct: 176 FVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESN 235
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ NSL+ Y + D++SA ++F +V WT +IS ++ G +EA+++F +
Sbjct: 236 ASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQE 295
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
++PN T+V VL AC+ LG K G+++H +R
Sbjct: 296 FKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIR 330
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ +Q+ AI L+++M +NC + TF ++ACS +KG +H +I
Sbjct: 473 NSMICGFSQNGYSVEAITLFDQMYMNC-VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI 531
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
YG D ++ +L Y ++ AH +F+ + +V+W+ +I+G G I
Sbjct: 532 MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATIS 591
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+F G +KPN T + +LSACS G+ + GK
Sbjct: 592 LFNQMLGSGIKPNDITFMHILSACSHAGAVEEGK 625
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 5/175 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ QS Q A+ ++ KM N T L AC+ ++G +H VI+
Sbjct: 273 MISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA 332
Query: 97 HLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
++ F+ +L+ Y ++ H++F ++ +++W T+IS ++ G +EA+ +F
Sbjct: 333 MDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 392
Query: 156 CGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + P++ +L S LSAC ++ +LG IH + ++ N N+ + NA++D
Sbjct: 393 VQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFV-QNALID 446
Score = 42.7 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++HAH+ G L+ Y + S+ ++F++ PD W +I G
Sbjct: 19 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78
Query: 147 FHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
F +EA+ ++ + + SVL ACS G +G +H ++ E++ +++
Sbjct: 79 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138
Query: 203 NAVL 206
++L
Sbjct: 139 TSLL 142
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ +Q + A ++++ML N +T LKAC A + G ++H ++K
Sbjct: 137 SVISACSQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACGEKKALKFGRQLHCAIVKG 196
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D+FI SL+ Y ++ + ++F+ + + VTWT+II+G ++ G +EAI +F
Sbjct: 197 MYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVTWTSIIAGYARKGLGEEAIRLF 256
Query: 156 CGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + N T+VSVL AC S+ + G+ +HA +++ ++N+ L + ++ F
Sbjct: 257 RVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGSTLVWF 312
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 9/195 (4%)
Query: 16 KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
K +Q+H + + + ++N + A+ L+++++ + N+ TF L
Sbjct: 22 KVFDQMHERCV-VSWTAMINGYVSF----GLDDEALRLFSELIENGVTANNRTFVCILNV 76
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
CS + G +IHA V+K G+ ++ + ++++ FY D+ SA F V DVV W
Sbjct: 77 CSKRLDFELGRQIHACVVK-GNWRNLIVDSAIVSFYAQCGDLESAFCAFFQVREKDVVCW 135
Query: 136 TTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T++IS S+ G +EA MF G PN T+ ++L AC + K G+ +H ++
Sbjct: 136 TSVISACSQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACGEKKALKFGRQLHCAIVK 195
Query: 193 NLNENNIILDNAVLD 207
+ ++++ + +++D
Sbjct: 196 GMYKDDVFIGTSLVD 210
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N+ T L+AC A G E+HA +IK G ++++ ++L
Sbjct: 250 EEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGSTL 309
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ FY + A ++ + F +VV+WT +ISG G+ EA++ + V+PN
Sbjct: 310 VWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLGYEFEALEFLKEMMDEGVEPNE 369
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S L AC++L S GK IH+ + + +N+ + +A++
Sbjct: 370 FTYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSALI 411
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+++ N+L+ Y + ++ A ++F+ + VV+WT +I+G G EA+ +F +
Sbjct: 1 MYVDNNLISVYARLGELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEALRLFSELIE 60
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V N T V +L+ CS +LG+ IHA ++ N N+I+D+A++ F
Sbjct: 61 NGVTANNRTFVCILNVCSKRLDFELGRQIHACVVKG-NWRNLIVDSAIVSF 110
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ +M++ N +T++ ALKAC+ + +G IH+ K ++++ ++L+
Sbjct: 352 EALEFLKEMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSALI 411
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPN 163
+ Y + A Q+F+S+ ++++W T+I ++ G +EA+ + GI+V +
Sbjct: 412 YMYSKCGYLSDAIQVFDSMPERNLISWKTMILSYARNGLCREALKLMYRMQAEGIEV--D 469
Query: 164 ANTLVSVLSACSSL 177
SV+ +C +
Sbjct: 470 DYIYASVMGSCGDV 483
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 13/172 (7%)
Query: 29 PQPHI----LNTLLKLLTQSSTPQNAIPLYNKMLN----CPSSYNHYTFTQALKACSLAH 80
P+P + N L++ + P++A+ L+ +ML+ CP+ + +T ALK+CS
Sbjct: 77 PRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPA--DQHTAACALKSCSRMC 134
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
A G + A+ +K G + D F+ +SL+H Y + D+ +A +F++ VV W I++
Sbjct: 135 ALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVA 194
Query: 141 GLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
K G E ++MF G + V + TLVSV++AC +G KLGK + H
Sbjct: 195 AYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGH 246
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110
+ ++ ML +++ T + AC + G + HV + G + + +L+
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDM 265
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTL 167
Y +I A ++F+ + DVV W+ +ISG ++ +EA+ +F + V+PN T+
Sbjct: 266 YAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTM 325
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
VSVLSAC+ LG+ + GK +H++ R IL A++DF
Sbjct: 326 VSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDF 366
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ+ + A+ L+++M N T L AC++ A + G +H++V +
Sbjct: 298 TQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTT 357
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ +L+ FY I A + F S+ + TWT +I G++ G +EA+++F +
Sbjct: 358 ILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREA 417
Query: 159 DVKPNANTLVSVLSACS 175
++P T + VL ACS
Sbjct: 418 GIEPTDVTFIGVLMACS 434
>gi|125536179|gb|EAY82667.1| hypothetical protein OsI_37887 [Oryza sativa Indica Group]
Length = 425
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 11/191 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ----- 83
P ++L T+++ ++ P A+ L+ +++ + TF A+KA + A +
Sbjct: 99 PNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTP 158
Query: 84 -KGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G IH +K G + + + + N+L+HFY K + A ++F+ + DVV+WTT++ G
Sbjct: 159 SGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKMFDEMPERDVVSWTTLVDG 218
Query: 142 LSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G EA +FC + V +PNA TLV+ +SA +G G +H +
Sbjct: 219 YARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVAR 278
Query: 198 NIILDNAVLDF 208
++ LDNA++D
Sbjct: 279 SVNLDNALVDM 289
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF- 155
+ D++ S+++ Y D+ SA Q+F + +VV+W+ +I+ S+ +EA+ +F
Sbjct: 307 EVKDVYSWTSMVNAYAKCGDLESAEQLFEDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFR 366
Query: 156 ----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
G+D P TLVSVLSAC+ LG LG+ I+
Sbjct: 367 EMIAAGVD--PIDATLVSVLSACAQLGCLDLGRWIY 400
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P ++ L+ S AI LY++ML+ ++Y LKAC A ++G E+
Sbjct: 100 PNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREV 159
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS----VVFPDVVTWTTIISGLSK 144
H+ +K G + ++ ++ Y ++ A ++F VV D V WT +I G +
Sbjct: 160 HSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVR 219
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
A++ F G+ +V+PN T+V VLSACS LG+ ++G+ +H++ + E N+ +
Sbjct: 220 NEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFV 279
Query: 202 DNAVLDF 208
NA+++
Sbjct: 280 GNALINM 286
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T L ACS A + G +H+++ K+ ++F+ N+L++ Y I A +F
Sbjct: 241 NEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVF 300
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
+ + DV+T+ T+ISGLS G ++AI++F G ++P T V VL+ACS G
Sbjct: 301 DEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGG 357
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L IHA +I+ GH D F+ LL I A +IF P+V +T +I G
Sbjct: 56 LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 115
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G + EAI ++ + + P+ + S+L AC S + + G+ +H+ +L+
Sbjct: 116 GNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALK 165
>gi|255569046|ref|XP_002525492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535171|gb|EEF36850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 542
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 84/140 (60%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ A+ L+ ++ + + YTF+ LKAC+ ++ L +H+ VIK G D+ ++N+
Sbjct: 353 PEEALFLFRQLHREDLAPDWYTFSIVLKACAGLGTERQALTVHSRVIKAGFEGDVVLENA 412
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT 166
L+H Y IF + Q+F+ + ++V+W +++ + G KEA+ +F ++V+P++ T
Sbjct: 413 LIHAYARCGSIFLSKQVFDEMRMRNLVSWNSMLKAYALHGQAKEALHLFSEMNVRPDSAT 472
Query: 167 LVSVLSACSSLGSRKLGKAI 186
+V++LSACS G + G I
Sbjct: 473 MVALLSACSHAGMVEEGIKI 492
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 14/200 (7%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPL-YNKMLNCPSSYNHYTFTQAL 73
F N + ++ P+P L+ L+ A+ L YN L P S T+
Sbjct: 11 FSFRNFTSSNLLPAPKPDDRFNELRFLSTRGQIDEALSLFYNAPLPLPHS--QQTYATLF 68
Query: 74 KACSLAHAHQKGLEIHAHVI-----KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
AC+ Q+G+ +H H++ + +F+ N L++ Y D+ A Q+F +
Sbjct: 69 HACARHGYLQQGIYLHQHLLLNNKNQGNRPLGVFVTNHLINMYAKCGDLEYARQLFAEMP 128
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCG--IDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+VV+WT +ISG ++ G E +F + +PN L S LS+C GK +
Sbjct: 129 ERNVVSWTALISGYAQHGQAYECSRLFSSMLMHCRPNEFALTSNLSSC----DYDHGKQV 184
Query: 187 HAHSLRNLNENNIILDNAVL 206
HA + + + + + N ++
Sbjct: 185 HALAFKMGLDATVYIGNTLI 204
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIF-NSVVFPDVVTWTTIISGLS 143
++H I+ + + + +L+ Y + ++ +++F + + D+V+WT II+ L+
Sbjct: 290 FQLHCLSIRSAFVLQVEVATALVKAYSDLGGEVTDCYKLFLETGCYKDIVSWTGIITALA 349
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ +EA+ +F + D+ P+ T VL AC+ LG+ + +H+ ++ E +++
Sbjct: 350 ERQ-PEEALFLFRQLHREDLAPDWYTFSIVLKACAGLGTERQALTVHSRVIKAGFEGDVV 408
Query: 201 LDNAVL 206
L+NA++
Sbjct: 409 LENALI 414
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQ 83
++P+ ++++ L+ Q L++ ML +C N + T L +C H
Sbjct: 126 EMPERNVVSWTALISGYAQHGQAYECSRLFSSMLMHCRP--NEFALTSNLSSCDYDH--- 180
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF-SAHQIFNSVVFPDVVTWTTIISGL 142
G ++HA K G ++I N+L+ Y D A +F ++ + ++V+W ++I+G
Sbjct: 181 -GKQVHALAFKMGLDATVYIGNTLISMYSNNGDSDDEAWSVFANLEYRNLVSWNSMIAGF 239
Query: 143 SKCGFHKEAIDMF 155
+AI +F
Sbjct: 240 QVRKLGAKAISLF 252
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P+ + NTL K ++ P ++ LY KM + + +T+ +KA S G +
Sbjct: 72 PRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFAL 131
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HAHV+KYG + L+ Y+ ++ SA +F S+ D+V W ++ + G
Sbjct: 132 HAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNS 191
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
A++ F C V+ ++ T+VS+LSAC LGS ++G+ I+ + + + NII++NA
Sbjct: 192 AIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENAR 251
Query: 206 LD 207
LD
Sbjct: 252 LD 253
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L + Q+ A+ +NKM ++ +T L AC + + G EI+ K
Sbjct: 179 NAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARK 238
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+I ++N+ L ++ + +A +F + +VV+W+T+I G + G +EA+ +
Sbjct: 239 EEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTL 298
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F + ++PN T + VLSACS G GK
Sbjct: 299 FTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGK 331
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA V++ G + LL V + D+ A Q+F+ + P + W T+ G +
Sbjct: 29 KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88
Query: 147 FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
E++ ++ + V+P+ T V+ A S LG G A+HAH ++
Sbjct: 89 LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVK 137
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
++ L+++M S + +T T L AC+ + G ++H ++ + D+F+ N+L+
Sbjct: 336 SVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMD 395
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTL 167
Y + AH +F+ + D+V+W T+I G SK EA+++F + + KPN+ T+
Sbjct: 396 MYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITM 455
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+L AC+SL + + G+ IH H LRN + + NA++D
Sbjct: 456 ACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 495
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +++S P A+ L+ +M S N T L AC+ A ++G EIH H+++
Sbjct: 422 NTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILR 480
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + N+L+ Y+ + A +F+ + D+V+WT +I+G G+ EAI
Sbjct: 481 NGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAA 540
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + ++P+ + +S+L ACS G
Sbjct: 541 FNEMRNSGIEPDEVSFISILYACSHSG 567
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + + + L+ +ML + + T + CS G +H + IK
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIK 279
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + N LL Y ++ SA Q+F ++ VV+WT++I+G ++ G ++ +
Sbjct: 280 ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRL 339
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ + P+ T+ ++L AC+ G + GK +H + N ++++ + NA++D
Sbjct: 340 FHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMD 395
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSV 170
++ + SA ++F+ + DV++W ++ISG G ++ +D+F + + + T+VSV
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ CS+ G LG+A+H ++++ + L+N +LD
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLD 294
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 7/187 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P ++ L+ S +AI LY++ML+ ++Y LKAC A ++G E+
Sbjct: 93 PNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREV 152
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS----VVFPDVVTWTTIISGLSK 144
H+ +K G + ++ ++ Y ++ A ++F VV D V WT +I G +
Sbjct: 153 HSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVR 212
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
A++ F G+ +V+PN T+V VLSACS LG+ ++G+ +H++ + E N+ +
Sbjct: 213 NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFV 272
Query: 202 DNAVLDF 208
NA+++
Sbjct: 273 GNALINM 279
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T L ACS A + G +H+++ K+ ++F+ N+L++ Y I A +F
Sbjct: 234 NEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVF 293
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
+ + DV+T+ T+ISGLS G ++AI++F G ++P T V VL+ACS G
Sbjct: 294 DEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 350
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L IHA +I+ GH D F+ LL I A +IF P+V +T +I G
Sbjct: 49 LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 108
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
G + +AI ++ + + P+ + S+L AC S + + G+ +H+ +L+ L+ N ++
Sbjct: 109 GNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLV 167
>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 804
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ + S P NA+ + +M + N TF L+ACSL A + G I AH K
Sbjct: 281 SAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATK 340
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+L + F+ ++L+ Y I IFN + D+V W+++I+G G EA++
Sbjct: 341 AGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALET 400
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLG 178
F CG VKPN +SVLSACS G
Sbjct: 401 FSNMLACG--VKPNEVVFISVLSACSHCG 427
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T+++ ++ P+ A +++M + + A A H+ G+ H ++K
Sbjct: 181 TIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKN 240
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G L + I +LL Y ++ SA +F+ + D ++W+ +IS + A++ F
Sbjct: 241 GLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETF 300
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ D +PN T VS+L ACS +G+++LG++I AH+ + +N L +A++D
Sbjct: 301 KQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDL 356
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116
ML NH T ++A S I VIK G ++ + +L+ FY + D
Sbjct: 1 MLMTEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVATALIGFY-SDYD 59
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 173
+ +IFN D+V W+ ++S K G + EA ++F + V+PN ++VS+L A
Sbjct: 60 MGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPA 119
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C+++G+ GK IH S++ + + N+++D
Sbjct: 120 CANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVD 153
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
NH + L AC+ A G EIH IK + NSL+ Y ++ ++ +F
Sbjct: 109 NHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVF 168
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-------GIDVKPNANTLVSVLSACSSL 177
+ ++ D+++WTTII G + +EA F G D + +V+++ A
Sbjct: 169 DQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQA---- 224
Query: 178 GSRKLGKAIHAHSLRN 193
K G A H L+N
Sbjct: 225 DEHKFGIAFHGFLLKN 240
>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
Length = 826
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ + S P NA+ + +M + N TF L+ACSL A + G I AH K
Sbjct: 360 SAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATK 419
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+L + F+ ++L+ Y I IFN + D+V W+++I+G G EA++
Sbjct: 420 AGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALET 479
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLG 178
F CG VKPN +SVLSACS G
Sbjct: 480 FSNMLACG--VKPNEVVFISVLSACSHCG 506
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L + + + A+ L+ ML NH T ++A S I VIK G +
Sbjct: 64 LVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESE 123
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ + +L+ FY + D+ +IFN D+V W+ ++S K G + EA ++F +
Sbjct: 124 VSVATALIGFY-SDYDMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQY 182
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V+PN ++VS+L AC+++G+ GK IH S++ + + N+++D
Sbjct: 183 DGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVD 232
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T+++ ++ P+ A +++M + + A A H+ G+ H ++K
Sbjct: 260 TIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKN 319
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G L + I +LL Y ++ SA +F+ + D ++W+ +IS + A++ F
Sbjct: 320 GLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETF 379
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ D +PN T VS+L ACS +G+++LG++I AH+ + +N L +A++D
Sbjct: 380 KQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDL 435
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
NH + L AC+ A G EIH IK + NSL+ Y ++ ++ +F
Sbjct: 188 NHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVF 247
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-------GIDVKPNANTLVSVLSACSSL 177
+ ++ D+++WTTII G + +EA F G D + +V+++ A
Sbjct: 248 DQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQA---- 303
Query: 178 GSRKLGKAIHAHSLRN 193
K G A H L+N
Sbjct: 304 DEHKFGIAFHGFLLKN 319
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 11/190 (5%)
Query: 29 PQPHILNTLLKLLTQSST---PQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQK 84
P + N L++ QS + + AI LYN ML S + +++TF LKAC+ A +
Sbjct: 85 PNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFE 144
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + HAH++K G D++I NSL+HFY + + SA +F+ + +V+W +I
Sbjct: 145 GKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVL 204
Query: 145 CGFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN----LNEN 197
G + A F +P+ T+ SV++AC+ L + LG HA LRN + +
Sbjct: 205 FGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARD 264
Query: 198 NIILDNAVLD 207
+++++N++LD
Sbjct: 265 HVLVNNSLLD 274
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL----HDIFIQNSLLHFYVTVKDIFSA 120
+ YT + AC+ A G+ HA +++ + + + NSLL Y + A
Sbjct: 226 DGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIA 285
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACS 175
QIF + DV +W ++I G + G + A++ F + PN+ T V VLSAC+
Sbjct: 286 TQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACN 344
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG---FHKEAID 153
H +F+ + +LHF ++ D+ A+++F+ V P+ W +I ++ +EAI
Sbjct: 53 HSTTLFLYSRILHF-SSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAIL 111
Query: 154 MFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ + + P+ +T VL AC+ L + GK HAH L+ ++++ ++N+++ F
Sbjct: 112 LYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHF 170
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 8/187 (4%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK---G 85
P ++L T+++ ++ P A L+ +++ + T A+KA + H H G
Sbjct: 100 PNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGG 159
Query: 86 LEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H +K+GH+ + + N+L+HFY + + A +F+ + DVV+WTT++ G ++
Sbjct: 160 EGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYAR 219
Query: 145 CGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
G EA +FC + V +PN TLV+V+SA +G G+ ++ + ++
Sbjct: 220 RGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVN 279
Query: 201 LDNAVLD 207
L+NA++D
Sbjct: 280 LENALID 286
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ D++ ++++ Y D+ SA ++F+ + + V+W+ +I+ S+ +EA+ +F
Sbjct: 306 VKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKA 365
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ V+P LVSVLSAC+ LG LG+ I+ +N +I AVL
Sbjct: 366 MIEEGVEPINAGLVSVLSACAQLGCLDLGRWIY--------DNYVISGKAVL 409
Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH-AHVIKY 95
++ +Q++ P+ A+ L+ M+ + L AC+ G I+ +VI
Sbjct: 346 MIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISG 405
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ + + N+ + Y D +A ++F + +VV+W ++I + G +E + +F
Sbjct: 406 KAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLF 465
Query: 156 ---CGIDVKPNANTLVSVLSACSSLG 178
G + P+ T + +LSACS G
Sbjct: 466 EQLKGTCIVPDEITFLGLLSACSHSG 491
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 72/219 (32%), Positives = 104/219 (47%), Gaps = 42/219 (19%)
Query: 28 IPQPH--ILNTLLK-LLTQSSTPQNAIPL-YNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
IPQP + NT++K L P N+I L Y+ ML N++TF L AC Q
Sbjct: 83 IPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC---RKIQ 139
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G++IHAH+ K+G NSL+H YVT + + A ++F+++ PD V+WT++ISG S
Sbjct: 140 HGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYS 199
Query: 144 KCGFHKEAIDMFCGIDVK------------------------------PNANTL-----V 168
K G EA +F + K N N L
Sbjct: 200 KWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVAT 259
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++LSAC+ LG+ GK IH + RN E + L A++D
Sbjct: 260 TMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVD 298
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q++ A L+++M + + + T L AC+ A +G IH ++
Sbjct: 223 NAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIK 282
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEA 151
+ G D + +++ Y + A Q+F+S+ P + +W +I GL+ G + A
Sbjct: 283 RNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAA 342
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
I +F ++ V P+ T +++L+AC+ G + G+ ++ +R
Sbjct: 343 IQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIR 386
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++ +Q+ A+ ++ +M+ N +TF L +C A
Sbjct: 111 EMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLAL 170
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++K+ + IF+ +SLL Y I A +IF + DVV+ T II+G ++
Sbjct: 171 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQ 230
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA++MF + ++PN T S+L+A S L GK H H LR +L
Sbjct: 231 LGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL 290
Query: 202 DNAVLDF 208
N+++D
Sbjct: 291 QNSLIDM 297
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L AC A ++G +HAH+IK +L +++ LL FY + A ++ + +
Sbjct: 54 YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+VV+WT +IS S+ G EA+ +F + D KPN T +VL++C LGK
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ 173
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH ++ +++I + +++LD
Sbjct: 174 IHGLIVKWNYDSHIFVGSSLLDM 196
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q + A+ ++ ++ + N+ T+ L A S G + H HV++
Sbjct: 229 AQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 288
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+QNSL+ Y ++ A ++F+++ ++W ++ G SK G +E +++F +
Sbjct: 289 VLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 348
Query: 159 -DVKPNANTLVSVLSACS 175
VKP+A TL++VLS CS
Sbjct: 349 KRVKPDAVTLLAVLSGCS 366
>gi|326506094|dbj|BAJ91286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 625
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL +S + + + M C + +TF L + A + +++H+ ++K
Sbjct: 194 NVLLDCGVRSGEAGSCMKEFLSMTGCGVQPDEFTFATVLNGLAELSAGLEAMQVHSIILK 253
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+L D+F+ NSLL Y I A ++F++++ DVV+WT +ISGL+ CG+ +A D+
Sbjct: 254 SGYLKDLFLCNSLLDLYGRCGYIDLAKKLFDAMLEKDVVSWTAVISGLAACGYQADAFDI 313
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + + PN+ T S++S+C+ + G+ HA
Sbjct: 314 FRQMLKAAMLPNSFTFGSIVSSCADVNDLGSGRQCHA 350
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A ++ +ML N +TF + +C+ + G + HA V+K+G I + +
Sbjct: 309 DAFDIFRQMLKAAMLPNSFTFGSIVSSCADVNDLGSGRQCHALVVKHGLELVPIIASCFV 368
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI------DVKP 162
Y + A ++F + D+++W +I GL++ G +++++ + V P
Sbjct: 369 DMYSKCAKMDDAIRMFEIMPQRDIISWNAMICGLAQNGQSARSLELYDEMTQLHYESVTP 428
Query: 163 NANTLVSVLSACSSLGSRKLG 183
N+ T V VLSACS G+ + G
Sbjct: 429 NSVTFVGVLSACSHAGAVQKG 449
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT + L ++ ++A+ + +M + + +T++ C + + ++HA +K
Sbjct: 95 NTAISGLARAGRTRDALRRFLQMTHTALVPDAFTYSIVSPCCGVDLGSAR--QVHARAVK 152
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + + Y + + A ++F+ + D+++W ++ + G +
Sbjct: 153 AGVFADACVGTGFIKLYAELGLMEDAGKVFDCMPLRDLMSWNVLLDCGVRSGEAGSCMKE 212
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F G V+P+ T +VL+ + L + +H+ L++ ++ L N++LD
Sbjct: 213 FLSMTGCGVQPDEFTFATVLNGLAELSAGLEAMQVHSIILKSGYLKDLFLCNSLLDL 269
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 98/171 (57%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+Q+ AI L+ +M Y F+ L AC+ + G ++H ++K+G +
Sbjct: 188 LSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE 247
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
F+ N+L+ Y ++ +A QIF+ + D +++ ++ISGL++ GF A+ +F + +
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL 307
Query: 161 ---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
KP+ T+ S+LSAC+S+G+ GK +H++ ++ +++I++ ++LD
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+L+ L Q A+ L+ KM L+C + T L AC+ A KG ++H++VI
Sbjct: 283 NSLISGLAQRGFSDRALQLFEKMQLDCMKP-DCVTVASLLSACASVGAGYKGKQLHSYVI 341
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+ I+ SLL YV DI +AH+ F + +VV W ++ + G E+
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYW 401
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + ++ PN T S+L C+SLG+ LG+ IH +++ + N+ + + ++D
Sbjct: 402 IFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLID 458
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-HQKGLEIHAHVI 93
N ++ L + L++ M+ + + TF L+ACS A Q +IHA +I
Sbjct: 80 NKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKII 139
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+G + N L+ Y + A +F + D V+W +ISGLS+ G EAI
Sbjct: 140 HHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAIL 199
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+FC + V P SVLSAC+ + KLG+ +H
Sbjct: 200 LFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHG 237
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT+ L+ C+ A G +IH VIK G ++++ + L+ Y ++ +A I
Sbjct: 414 NQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT +I+G ++ EA+ +F ++ ++ + S +SAC+ + +
Sbjct: 474 QRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALN 533
Query: 182 LGKAIHAHSLRNLNENNIILDNAV 205
G+ IHA S + ++ + NA+
Sbjct: 534 QGQQIHAQSYISGYSEDLSIGNAL 557
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ A+ L+ +M N ++ F+ A+ AC+ A +G +IHA G+ D+
Sbjct: 492 TQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDL 551
Query: 102 FIQNS-----LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF- 155
I N+ L+ Y I A + F + +VV+W +I+G S+ G+ EA+ +F
Sbjct: 552 SIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFE 611
Query: 156 ---------------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ ++P+A ++LSAC+ + ++G+ H L
Sbjct: 612 EMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLL 662
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
NTL++ S + A LY KML SS + +TF LKAC+ +G ++H +
Sbjct: 175 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQI 234
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+G D+++ N L+H Y + + A ++F+ + +V+W ++I L + G + A+
Sbjct: 235 VKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSAL 294
Query: 153 DMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN---NIILDNAVLD 207
+F + +P+ T+ SVLSAC+ LGS LG HA LR + + ++++ N++++
Sbjct: 295 QLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 354
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L + +A+ L+ +M + YT L AC+ + G HA +++
Sbjct: 278 NSMIDALVRFGEYDSALQLFREMQRSFEP-DGYTMQSVLSACAGLGSLSLGTWAHAFLLR 336
Query: 95 YGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ D+ ++NSL+ Y + A Q+F + D+ +W +I G + G +EA
Sbjct: 337 KCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 396
Query: 152 IDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGK 184
++ F + +V+PN+ T V +L AC+ G G+
Sbjct: 397 MNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 434
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 36/242 (14%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLN 59
F + L S S+ ++ + ++IP P I N++++ ++ P ++ ++ KML
Sbjct: 46 FASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLR 105
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
+H T+ KA + + L +H + K G D FI NSL+H Y + DI S
Sbjct: 106 FGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGS 165
Query: 120 AHQIFNSV--------------------------VFP-----DVVTWTTIISGLSKCGFH 148
A ++F+ + VF DVV+W+++I G K G +
Sbjct: 166 ARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEY 225
Query: 149 KEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
A+ +F + V K N T+VSVL AC+ LG+ + G+ +H + + N ++L ++
Sbjct: 226 GVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSL 285
Query: 206 LD 207
+D
Sbjct: 286 MD 287
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ +M N T L AC+ A ++G +H +++ + ++ SL+
Sbjct: 228 ALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMD 287
Query: 110 FYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
Y I A +F V DV+ W TII GL+ G E++++F + V P+
Sbjct: 288 MYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDE 347
Query: 165 NTLVSVLSACSSLG 178
T + + SAC+ G
Sbjct: 348 ITYLCLFSACAHGG 361
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ +P+ AI Y +M + S + TF LKAC+ A +G +I V+K
Sbjct: 729 NDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAAISAFNEGRKIQVDVMK 788
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++++QN+++HFY + K I A ++F+ + + VV+W ++S + ++ +
Sbjct: 789 HGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGL 848
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F G P+ T+V +LSACS LG+ G+ +H+ + N L A++D
Sbjct: 849 FVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVD 904
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L + ++ L+ KM + T L ACS G +H+ VI+
Sbjct: 830 NAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIE 889
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + + +L+ Y + A +F+ ++ +V TW+ +I GL++ GF KEA+++
Sbjct: 890 KGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALEL 949
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + + PN T + VL ACS G
Sbjct: 950 FPKMKQSSISPNYVTFLGVLCACSHAG 976
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q A+ ++++M++ N +T LKAC+ A + G ++H V+K
Sbjct: 520 TMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKK 579
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ +DI I ++L+ Y ++F A +F+ + + +TWT++ISG ++ G ++AI +F
Sbjct: 580 MYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAIFLF 639
Query: 156 CGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++ N T+V +LSAC SL S LGK +HA ++N E+N+ + + ++ F
Sbjct: 640 RKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNLQIGSTLVWF 695
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110
+ L+ M+ N TF LK+C + G ++H ++K G ++ + +++ HF
Sbjct: 435 VRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVK-GGWSNVIVDSAIAHF 493
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTL 167
Y D+ SA IF+ + DV++WTT+I+ + G +A+ MF + +PN T+
Sbjct: 494 YAQCGDVASASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTV 553
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
SVL AC+ + + GK +H L+ + +N+I + +A++
Sbjct: 554 CSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALV 592
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
QS + AI L+ KM N+ T L AC + G E+HA +IK ++
Sbjct: 628 QSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNLQ 687
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGI 158
I ++L+ FY + A +I ++ D ++WT +ISG + G + EA+ DM
Sbjct: 688 IGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWD- 746
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VKPN T S L AC+ L + + G+ IH + + +N+ + ++++D
Sbjct: 747 GVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLID 795
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ A Q G +IH V K ++F+ +SL+ Y+ + A ++F
Sbjct: 751 NTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVF 810
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+++ ++VTW II+G ++ G +EA+
Sbjct: 811 DAMPEHNLVTWKVIITGFAQNGLCEEAL 838
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+L+ C A ++ +HA ++ F+ N+L+ Y ++ A ++F+ +
Sbjct: 355 LASSLRDCGGADGVRR---VHAVAVRSLDSLGTFVANNLISAYARFDEVSDARKVFDEMP 411
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKA 185
VV+WT +++ K G + E + +F G V+ N+ T V +L +C KLG+
Sbjct: 412 ERSVVSWTAMMNAYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQ 471
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
+H ++ +N+I+D+A+ F
Sbjct: 472 VHCCIVKG-GWSNVIVDSAIAHF 493
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q A+ ++++M++ N +T LKAC+ A + G ++H V+K
Sbjct: 251 TMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKK 310
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ +DI I ++L+ Y ++F A +F+ + + +TWT++ISG ++ G ++AI +F
Sbjct: 311 MYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLF 370
Query: 156 CGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++ N T+V +LSAC SL S LGK +HA ++N E N+ + + ++ F
Sbjct: 371 RKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWF 426
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Query: 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110
+ L+ M+ N TF LK+C + G ++H ++K G ++ + +++ HF
Sbjct: 166 VRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVK-GGWSNVIVDSAIAHF 224
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTL 167
Y D+ SA IF+ + + DV++WTT+I+ + G +A+ MF + +PN T+
Sbjct: 225 YAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTV 284
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
SVL AC+ + + GK +H L+ + +N+I + +A++
Sbjct: 285 CSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALV 323
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ QS + AI L+ KM N+ T L AC + G E+HA +IK
Sbjct: 352 SMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKN 411
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA---I 152
++ I ++L+ FY + A +I ++ D ++WT +ISG + G + EA +
Sbjct: 412 SMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSL 471
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
D VKPN T S L AC+ L + + G+ IH + + +N+ + ++++D
Sbjct: 472 DDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDM 527
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ A Q G +IH V K ++F+ +SL+ Y+ + A +F
Sbjct: 482 NTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVF 541
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+++ ++VTW II+G ++ G +EA+
Sbjct: 542 DAMPEHNLVTWKVIITGFAQNGLCEEAL 569
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +L+ C A ++ +HA ++ F+ N+L+ Y ++ A ++F
Sbjct: 82 NAEALASSLRDCGGADGVRR---VHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVF 138
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+ + VV+WT +++ K G + E + +F G V+ N+ T V +L +C K
Sbjct: 139 DEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAK 198
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
LG+ +H ++ +N+I+D+A+ F
Sbjct: 199 LGQQVHCCIVKG-GWSNVIVDSAIAHF 224
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT+++ ++S P +I ++ +ML ++ T+ +KA + + G IHAH+IK
Sbjct: 83 NTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSIHAHIIK 142
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG---FHKEA 151
+G D FI NSL+H Y + DI A +F+ + ++V+W +++ G +KCG ++
Sbjct: 143 HGFESDRFISNSLVHMYASFGDISCARYVFDGMPVKNLVSWNSMVDGSAKCGNMVLARQL 202
Query: 152 IDMFCGIDV-------------------------------KPNANTLVSVLSACSSLGSR 180
D+ DV KPN T+VSVL AC+ LG+
Sbjct: 203 FDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAHLGAL 262
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +H + + N ++L +++D
Sbjct: 263 DKGRMMHHYVIDNKLPLTLVLCTSLVD 289
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P +L+ +L+ ++ +A+ +++KM N T L AC+ A KG
Sbjct: 206 MPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAHLGALDKG 265
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTWTTIISGLS 143
+H +VI + + SL+ Y I A +F + DV+ W +I GL+
Sbjct: 266 RMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLA 325
Query: 144 KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G KE++D+F ++ VKP+ T +S+L AC+ G
Sbjct: 326 THGLVKESLDLFKEMNFVGVKPDEITYLSLLHACAHGG 363
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IHA VI G D + +L F +I + + S++ P + W T+I G SK
Sbjct: 32 KIHALVITLGLSQDEPFVSKILSFSALSDSGNINYSCWVLFSLLNPTIFNWNTVIRGYSK 91
Query: 145 CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+I +F + V P+ T ++ A + L R+LG +IHAH +++ E++ +
Sbjct: 92 SKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSIHAHIIKHGFESDRFI 151
Query: 202 DNAVL 206
N+++
Sbjct: 152 SNSLV 156
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
NTL++ S + A LY KML SS + +TF LKAC+ +G ++H +
Sbjct: 109 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQI 168
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+G D+++ N L+H Y + + A ++F+ + +V+W ++I L + G + A+
Sbjct: 169 VKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSAL 228
Query: 153 DMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN---NIILDNAVLD 207
+F + +P+ T+ SVLSAC+ LGS LG HA LR + + ++++ N++++
Sbjct: 229 QLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 288
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L + +A+ L+ +M + YT L AC+ + G HA +++
Sbjct: 212 NSMIDALVRFGEYDSALQLFREMQRSFEP-DGYTMQSVLSACAGLGSLSLGTWAHAFLLR 270
Query: 95 YGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ D+ ++NSL+ Y + A Q+F + D+ +W +I G + G +EA
Sbjct: 271 KCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 330
Query: 152 IDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGK 184
++ F + +V+PN+ T V +L AC+ G G+
Sbjct: 331 MNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 368
>gi|359491319|ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74400-like [Vitis vinifera]
Length = 482
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 100/183 (54%), Gaps = 4/183 (2%)
Query: 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNC-PSSYNHYTFTQALKACSLAHAHQKGLEI 88
+P N LK QSS + + +L PSS + ++ ALKAC+L + +G ++
Sbjct: 33 KPPKSNQTLKRYLQSSNTSKVLLFFRILLRKNPSSIDSFSLMFALKACTLKSSLVEGKQM 92
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA VI +G IF+Q SL+ Y ++ AH +F+ + ++++WT++IS
Sbjct: 93 HALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNLISWTSVISAYVDNQRP 152
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+A+ +F + DV+P+ T+ LSAC+ LG+ +G+ IHA+ + ++ L+N++
Sbjct: 153 NKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 212
Query: 206 LDF 208
++
Sbjct: 213 INM 215
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 22 HAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H +IP ++++ +++ + P A+ L+ +M + T T AL AC+
Sbjct: 125 HNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADL 184
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
A G IHA++ G D+ + NSL++ Y +I +A ++F+ DV TWT++I
Sbjct: 185 GALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFDGTQKKDVTTWTSMI 244
Query: 140 SGLSKCGFHKEAIDMFCGID-------------------VKPNANTLVSVLSACSSLGSR 180
G + G +EA+ +F + V PN T + VL ACS G
Sbjct: 245 VGHALHGQAEEALQLFTEMKETNKRARKNKRNGEHESSLVLPNDVTFMGVLMACSHAGLV 304
Query: 181 KLGK 184
+ GK
Sbjct: 305 EEGK 308
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 37/217 (17%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKML---NCPSSYNHYTFTQALKACSLAHAHQKG 85
P LN++++ ++SSTP + Y +L N S ++YTFT ++ C+ AH G
Sbjct: 72 PTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTG 131
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV------------- 132
L +H VIK+G D +Q L+ Y + + S H +F+ V PD+
Sbjct: 132 LCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKC 191
Query: 133 ------------------VTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVL 171
VTW +I+G ++CG +EA+D+F + VK N ++V VL
Sbjct: 192 GDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVL 251
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SAC+ L G+ +HA+ R + L A++D
Sbjct: 252 SACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDM 288
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q + A+ +++ M N + L AC+ G +HA+V +
Sbjct: 213 NAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVER 272
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
Y + + +L+ Y ++ A Q+F + +V TW++ I GL+ GF +E++D+
Sbjct: 273 YKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDL 332
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
F + V+PN T +SVL CS +G + G+ H S+RN+
Sbjct: 333 FNDMKREGVQPNGITFISVLKGCSVVGLVEEGRK-HFDSMRNV 374
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ NT+++ A+ +Y M + N YTF LKAC +KG IH HV
Sbjct: 74 VWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHV 133
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+G D+F+ N+L+ FY +I ++ ++F+ + D+VTW ++ISG + G +A+
Sbjct: 134 VKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDAL 193
Query: 153 DMF------CGIDV-KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+F G V P++ TLV++L AC+ + + G IH++ +++ E + L + +
Sbjct: 194 VLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGL 253
Query: 206 L 206
+
Sbjct: 254 I 254
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV--KDIFS 119
S N Y +T L+ C + IHA +I G + F+ L+ Y +I
Sbjct: 3 SQRNSYDYTYLLQRCKGTKTIKS---IHAQIIIGGFEENPFLGAKLVGKYAQCYESNIED 59
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACS 175
A ++F+ + DV W TII G + G EA++++ C V N T VL AC
Sbjct: 60 ARKVFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCS-GVAANRYTFPFVLKACG 118
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ K G+AIH H +++ + ++ + NA++ F
Sbjct: 119 AMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAF 151
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY----NHYTFTQALKACSLAHAHQKGLEIHA 90
N+++ + +A+ L++ ML + T L AC+ A A Q+GL IH+
Sbjct: 177 NSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHS 236
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+VIK G D + + L+ Y + SA +F+ + ++V W II G E
Sbjct: 237 YVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADE 296
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLG 178
A+ MF G+ + P+ + +LSA S G
Sbjct: 297 ALKMFSGLIDSGLHPDGVIFLCLLSAFSHAG 327
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 98/171 (57%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+Q+ AI L+ +M Y F+ L AC+ + G ++H ++K+G +
Sbjct: 188 LSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE 247
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
F+ N+L+ Y ++ +A QIF+ + D +++ ++ISGL++ GF A+ +F + +
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL 307
Query: 161 ---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
KP+ T+ S+LSAC+S+G+ GK +H++ ++ +++I++ ++LD
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+L+ L Q A+ L+ KM L+C + T L AC+ A KG ++H++VI
Sbjct: 283 NSLISGLAQRGFSDRALQLFEKMQLDCMKP-DCVTVASLLSACASVGAGYKGKQLHSYVI 341
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+ I+ SLL YV DI +AH+ F + +VV W ++ + G E+
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYW 401
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + ++ PN T S+L C+SLG+ LG+ IH +++ + N+ + + ++D
Sbjct: 402 IFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLID 458
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-HQKGLEIHAHVI 93
N ++ L + L++ M+ + + TF L+ACS A Q +IHA +I
Sbjct: 80 NKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKII 139
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+G + N L+ Y + A +F + D V+W +ISGLS+ G EAI
Sbjct: 140 HHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAIL 199
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+FC + V P SVLSAC+ + KLG+ +H
Sbjct: 200 LFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHG 237
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++++M N +TF A+ A + ++G +IHA +IK
Sbjct: 586 NALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIK 645
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + N L+ Y I A + F + +VV+W +I+G S+ G+ EA+ +
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSL 705
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + + PN T V VLSACS +G
Sbjct: 706 FEEMKQLGLMPNHVTFVGVLSACSHVG 732
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ A+ L+ +M N ++ F+ A+ AC+ A +G +IHA G+ D+
Sbjct: 492 TQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDL 551
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
I N+L+ Y A+ F + D ++W +ISG ++ G +EA+ +F ++
Sbjct: 552 SIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA 611
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
V+ N T S +SA ++ + K GK IHA ++
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQGKQIHAMMIK 645
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT+ L+ C+ A G +IH VIK G ++++ + L+ Y ++ +A I
Sbjct: 414 NQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT +I+G ++ EA+ +F ++ ++ + S +SAC+ + +
Sbjct: 474 QRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALN 533
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IHA S + ++ + NA++
Sbjct: 534 QGQQIHAQSYISGYSEDLSIGNALVSL 560
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 5/188 (2%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I P NT+ + +S P A+ Y +M+ + +T+ LKA S + ++
Sbjct: 89 MIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVRE 148
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+ I+ G +F+QNSLLH Y D SAH +F + D+V ++I+G +
Sbjct: 149 GEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFAL 208
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
G EA+ +F + V+P+ T+VS+LSA + LG+ +LG+ +H + L+ L EN+ +
Sbjct: 209 NGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHV 268
Query: 201 LDNAVLDF 208
N++LD
Sbjct: 269 -TNSLLDL 275
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P A+ L+ +M + +T L A + A + G +H +++K G + + NS
Sbjct: 212 PSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNS 271
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPN 163
LL Y I+ + + V+WT++I GL+ GF +EA+++F G + P+
Sbjct: 272 LLDLYAKCDAIWEXER--------NAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPS 323
Query: 164 ANTLVSVLSACSSLG 178
T V VL ACS G
Sbjct: 324 EITFVGVLYACSHCG 338
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
Query: 79 AHAHQKGLEIHAHVIKYGHL--------HDIFIQNSLLHFYVTVKDIFS-----AHQIFN 125
A + K IHA I++G L H IF SL ++F+ A+ +F
Sbjct: 29 ASSKHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMSYAYNVFTWVLSYAYNVFT 88
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL 182
+ P+V TW T+ G ++ A+ + + ++P+ +T +L A S + +
Sbjct: 89 MIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVRE 148
Query: 183 GKAIHAHSLRNLNENNIILDNAVL 206
G+AIH+ ++RN E+ + + N++L
Sbjct: 149 GEAIHSVTIRNGFESLVFVQNSLL 172
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ P + + ++ LS+ G K+A + + V+PNA T ++L AC+ G LG+
Sbjct: 356 IMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETAR 415
Query: 188 AHSLR 192
+H L+
Sbjct: 416 SHLLK 420
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 6/165 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++++ Q+S A+ L+ +M T T L+AC+ + G ++H HV
Sbjct: 131 VWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV 190
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+LL Y + A+ +F +V DV++W+T+I+GL++ G+ KEA+
Sbjct: 191 LKYDQ--DLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEAL 248
Query: 153 DMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+F + V KPN T+V VL ACS G + G + HS++ L
Sbjct: 249 KLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG-LYYFHSMKEL 292
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 101/188 (53%), Gaps = 12/188 (6%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC-SLAHAHQ 83
K+P ++++ T++ + + A+ ML N +T++ L+AC L + Q
Sbjct: 25 KMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLRQ 84
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+H +IK G D+F++++L+ Y ++ +A ++F+ +V D+V W++II+G +
Sbjct: 85 ----LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFA 140
Query: 144 KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ EA+ +F + TL SVL AC+ L +LG+ +H H L+ + ++I
Sbjct: 141 QNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLI 198
Query: 201 LDNAVLDF 208
L+NA+LD
Sbjct: 199 LNNALLDM 206
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ N L++ YV + A +F+ + +VV+WTT+IS S + +A++ +
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60
Query: 159 DVKPNANTLVSVLSACSSL 177
V+PN T SVL AC L
Sbjct: 61 GVRPNMFTYSSVLRACDGL 79
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 18 LNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L +A +++ + +++ T++ L Q+ + A+ L+ M N+ T L A
Sbjct: 213 LEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFA 272
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
CS HA +++ G L+++ ++K++F + P +
Sbjct: 273 CS-----------HAGLVEEG-----------LYYFHSMKELFG--------IDPGREHY 302
Query: 136 TTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+I L + G EA+D+ ++ +P+A T ++L+AC R + AIHA
Sbjct: 303 GCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRV--HRNVDVAIHA 353
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
NTL++ S + A LY KML SS + +TF LKAC+ +G ++H +
Sbjct: 118 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQI 177
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+G D+++ N L+H Y + + A ++F+ + +V+W ++I L + G + A+
Sbjct: 178 VKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSAL 237
Query: 153 DMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN---NIILDNAVLD 207
+F + +P+ T+ SVLSAC+ LGS LG HA LR + + ++++ N++++
Sbjct: 238 QLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 297
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L + +A+ L+ +M + YT L AC+ + G HA +++
Sbjct: 221 NSMIDALVRFGEYDSALQLFREMQRSFEP-DGYTMQSVLSACAGLGSLSLGTWAHAFLLR 279
Query: 95 YGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ D+ ++NSL+ Y + A Q+F + D+ +W +I G + G +EA
Sbjct: 280 KCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 339
Query: 152 IDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGK 184
++ F + +V+PN+ T V +L AC+ G G+
Sbjct: 340 MNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 377
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFN 125
+ + L+ C+ A + G++ H+H IK G D F+ NSLL Y + ++F A ++F+
Sbjct: 61 FFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFD 120
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKL 182
+ + D+++WT++I+G K K+++++F G+ ++PN TL +V+ ACS LG +L
Sbjct: 121 GLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRL 180
Query: 183 GKAIHAHSL-RNLNENNIILDNAVLD 207
GK H + R + N++I A++D
Sbjct: 181 GKCFHGVVMVRGFDLNDVI-STALID 205
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Query: 26 IKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS---SYNHYTFTQALKACSLAH 80
+++PQP + +++ T++ A+ + M C S + +TF L AC
Sbjct: 221 VELPQPDAICWTSIISAFTRNDVYDKALGFFYSM--CRKHGLSPDGFTFGTVLTACGNLG 278
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
++G E+HA VI G ++F+++SL+ Y + + + +F+ + ++V+WT ++
Sbjct: 279 RLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLG 338
Query: 141 GLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
G + G + I +F K + + +VL AC+ L + + GK +H ++ +++
Sbjct: 339 GYCQNGDFESVIRIF-REGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVV 397
Query: 201 LDNAVLD 207
++A++D
Sbjct: 398 TESALVD 404
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQN 105
P+ ++ L+ +ML N +T + +KACS + G H V+ G L+D+ I
Sbjct: 143 PKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDV-IST 201
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVK 161
+L+ Y + A +F + PD + WT+IIS ++ + +A+ F + +
Sbjct: 202 ALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLS 261
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ T +VL+AC +LG K GK +HA + + N+ ++++++D
Sbjct: 262 PDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVD 307
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ Y+F L+AC+ A ++G E+H +K D+ +++L+ Y I A++IF
Sbjct: 360 DTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIF 419
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ +++TW ++I G ++ G E +F + ++P+ + V VL ACS G
Sbjct: 420 VRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVD 479
Query: 182 LGKAIHA 188
GK A
Sbjct: 480 QGKKYFA 486
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 35/174 (20%)
Query: 6 LKSLKPTLSFKQLNQIHAQII-----------------------------------KIPQ 30
L P + + L Q+HAQII + P
Sbjct: 100 LSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPP 159
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P + N+L++ L+ S TP A+PLY+ ML +H T+ +KAC+ + GL +H
Sbjct: 160 PSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHT 219
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
HV+K G D +I +SL+H Y KD+ +A Q+FN DVV+W +I G K
Sbjct: 220 HVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 273
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L Q P A+ L+++M T L AC+ A KGL +H ++
Sbjct: 358 NSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 417
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + +L+ Y I A Q+FN++ DV+ W TII+G++ G KEA +
Sbjct: 418 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQL 477
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
F + V+PN T V++LSACS G G+ +
Sbjct: 478 FKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 512
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVK 161
NS+L +V ++ A +F+ + DVV+W ++++ ++CG EA+ +F + VK
Sbjct: 327 NSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVK 386
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN--ENNIILDNAVLD 207
P T+VS+LSAC+ LG+ L K +H H+ N N E N I+ A++D
Sbjct: 387 PTEATVVSLLSACAHLGA--LDKGLHLHTYINDNRIEVNSIVGTALVD 432
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ A+ LY++ML + YTF L+ C +G EIH HVI+
Sbjct: 176 NVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIR 235
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
YG D+ + N+L+ YV D+ +A +F+ + D ++W +ISG + G E + +
Sbjct: 236 YGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRL 295
Query: 155 FCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F G+ +K P+ T+ SV++AC LG +LG+ IH + LR
Sbjct: 296 F-GMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLR 336
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
PQ A+ Y M + T L ACS G+ +H + G + + NS
Sbjct: 390 PQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANS 449
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNA 164
L+ Y K I A +IF+S + ++V+WT+II GL EA+ F + +KPN+
Sbjct: 450 LIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNS 509
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
TLV VLSAC+ +G+ GK IHAH+LR + + NA+LD
Sbjct: 510 VTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILD 552
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+ M+ P + T T + AC L + G +IH +V++ D I NSL+ Y
Sbjct: 295 LFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYS 354
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVS 169
+V I A +F+ D+V+WT +ISG C ++A++ + ++ + P+ T+
Sbjct: 355 SVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAI 414
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VLSACS L + +G +H + + + I+ N+++D
Sbjct: 415 VLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLID 452
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHV-IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ ++ C A ++G ++++V I HL + + N+LL +V ++ A +F +
Sbjct: 109 YVALIRLCEWKRARKEGSRVYSYVSISMSHL-SLQLGNALLSMFVRFGNLVDAWYVFGRM 167
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
++ +W ++ G +K G EA+D++ + VKP+ T VL C + + G+
Sbjct: 168 EKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGR 227
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IH H +R E+++ + NA++
Sbjct: 228 EIHVHVIRYGFESDVDVVNALI 249
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ A G EIHAH ++ G D F+ N++L YV + A + F
Sbjct: 508 NSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF 567
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
SV +V +W +++G ++ G A ++F + +V PN T +S+L ACS G
Sbjct: 568 FSVDH-EVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSG 623
>gi|356515240|ref|XP_003526309.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 560
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 3/171 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I + + N++++ +++P A+ LY +ML+ +++T+ LKAC + G
Sbjct: 26 IVLKNSFLWNSMIRGYACNNSPSKALILYREMLHFGHKPDNFTYPFVLKACGDLLLREIG 85
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA V+ G D+++ NS+L Y T D+ +A +F+ + D+ +W T++SG K
Sbjct: 86 RKVHALVVVGGLEEDVYVGNSILSMYFTFGDVAAARVMFDKMPVRDLTSWNTMMSGFVKN 145
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G + A ++F + + TL+++LSAC + K G+ IH + +RN
Sbjct: 146 GEARGAFEVFGDMRRDGFVGDGITLLALLSACGDVMDLKAGREIHGYVVRN 196
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Query: 13 LSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+F + K+P + NT++ ++ + A ++ M + T
Sbjct: 112 FTFGDVAAARVMFDKMPVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDGITLL 171
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYG---HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
L AC + G EIH +V++ G L + F+ NS++ Y + + A ++F +
Sbjct: 172 ALLSACGDVMDLKAGREIHGYVVRNGGNRRLCNGFLMNSIICMYCNCESMSFARKLFEGL 231
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGK 184
DVV+W ++ISG KCG +++F + P+ T+ SVL AC+ + + +LG
Sbjct: 232 RVKDVVSWNSLISGYEKCGDAFLVLELFGRMVVVGAVPDEVTVTSVLGACNQISALRLGA 291
Query: 185 AIHAHSLRNL 194
++ ++ ++ +
Sbjct: 292 SVQSYVVKRV 301
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N L+ L Q + A Y +M + N T+ L ACS + A G IH+H+
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ GH D+ I NSL+ Y D+ A ++FN++ D+++W II+G ++ EA+
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ + VKP T + +LSAC++ + GK IH LR+ ++N L NA+++
Sbjct: 472 KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMN 529
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
P+ N + ++ C+ + + IHA +++ G DIF+ N L++ YV + + A
Sbjct: 77 PTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDA 136
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 177
HQ+F + DV++W ++IS ++ GF K+A +F + P+ T +S+L+AC S
Sbjct: 137 HQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSP 196
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK IH+ + + + + N++L+
Sbjct: 197 AELEYGKKIHSKIIEAGYQRDPRVQNSLLN 226
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P I+ N ++ Q+ A+ +M N ++F L ACS A ++
Sbjct: 748 KMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEE 807
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +HA ++K D+ + +L+ Y + A ++F++ +VVTW +I+ ++
Sbjct: 808 GKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQ 867
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G +A+D F +D +KP+ +T S+LSAC+ G
Sbjct: 868 HGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 5/177 (2%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+ ++ H +K+P+ ++ N+L+ Q + A L+ +M + T+ L
Sbjct: 131 RSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISIL 190
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
AC + G +IH+ +I+ G+ D +QNSLL+ Y +D+ SA Q+F+ + DVV
Sbjct: 191 TACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVV 250
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
++ T++ ++ + +E I +F + + P+ T +++L A ++ GK IH
Sbjct: 251 SYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q + + A L+ +M + TF L C A + G +IH +I+
Sbjct: 556 NSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIE 615
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L++ Y+ + A+++F+S+ +V++WT +I G + G ++A ++
Sbjct: 616 SGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFEL 675
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + KP +T S+L AC S GK + AH L + E + + NA++
Sbjct: 676 FWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALI 730
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ LY +M + TF L AC+ + A+ G IH +++ G + + N+L++
Sbjct: 470 AMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMN 529
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y I A +F D+++W ++I+G ++ G ++ A +F + ++P+ T
Sbjct: 530 MYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKIT 589
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
SVL C + + +LG+ IH + + + ++ L NA+++
Sbjct: 590 FASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALIN 630
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A L+ +M N TF+ LKAC + +G ++ AH++ G+ D + N+L
Sbjct: 670 RKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNAL 729
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y + A ++F+ + D+++W +I+G ++ G A+ + V N
Sbjct: 730 ISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNK 789
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ VS+L+ACSS + + GK +HA ++ + ++ + A++
Sbjct: 790 FSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALI 831
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 3/153 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ LY++ML + YTF L++C A+ +G EIH HVI++G D+ N+L+
Sbjct: 187 ALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALIT 246
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANT 166
YV + SA +F+ ++ D ++W +ISG + G E +++F + V P+ T
Sbjct: 247 MYVKCGCVGSARTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMT 306
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+ SV+SAC LG +LG+ IH + +R N++
Sbjct: 307 MTSVISACELLGDDRLGREIHGYVVRTGYGNDV 339
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC+ G+ +H + G + + + NSL+ Y K I A ++F+ +
Sbjct: 407 TIACVLSACASLGQLDLGMRLHELANRMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCI 466
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKA 185
+V++WT+II GL EA+ F + ++KPN+ TL+SVLSAC+ +G+ GK
Sbjct: 467 QDKNVISWTSIILGLRINNRSFEALSFFRKMKRNLKPNSITLISVLSACARIGALMCGKE 526
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IHAH+L+ L NA+LD
Sbjct: 527 IHAHALKTAMVYEGFLPNAILD 548
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+ +ML + T T + AC L + G EIH +V++ G+ +D+ + + L+ Y
Sbjct: 291 LFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYA 350
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVS 169
++ A ++F+ DVV+WT +ISG H +A++ + ++ + P+ T+
Sbjct: 351 SLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHDKALETYKNMELAGIVPDEITIAC 410
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VLSAC+SLG LG +H + R + +I+ N+++D
Sbjct: 411 VLSACASLGQLDLGMRLHELANRMGLMSFVIVANSLID 448
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ A G EIHAH +K +++ F+ N++L YV + A F
Sbjct: 504 NSITLISVLSACARIGALMCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKLGLALNQF 563
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
N + DV W ++ G ++ G A+++F + V P+ T +++L ACS G
Sbjct: 564 N-LYKEDVAAWNILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRSG 619
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+ L L ++AI N M TF ++ C + +G + V+
Sbjct: 70 NSHLLQLCLEGKLEHAIKHLNSMQELKILVEDETFIALIRLCENKRGYTEGDYVFKAVLN 129
Query: 95 -YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ + + N+LL YV D+ +A +F + ++ +W ++ G +K GF EA+
Sbjct: 130 SLVNPLSVRLGNALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALC 189
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++ + +KP+ T VL +C GK IH H +R E ++ NA++
Sbjct: 190 LYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALI 245
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGL 86
P + N ++K+ +A+ +++ M+ C + + YTF +KACS+ G+
Sbjct: 146 PSLFLWNAIIKMYVDKGFHFDALRVFDSMI-CSGKFWPDKYTFPLVIKACSVMSMLNVGV 204
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
IH + G ++F+QNSLL Y+ + A Q+FN ++ VV+W T+ISG + G
Sbjct: 205 LIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNG 264
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+EA+ +F + V+P++ T+VS L +C L +LG +H +N + I + N
Sbjct: 265 RPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRN 324
Query: 204 AVLDF 208
A++D
Sbjct: 325 ALVDM 329
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ P+ A+ ++N M++ + T AL +C + G+++H +++
Sbjct: 254 NTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVH-KLVQ 312
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
HL + I ++N+L+ Y I A +F DV+TWT++I+G G K A+
Sbjct: 313 KNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALA 372
Query: 154 MFCGID---VKPNANTLVSVLSACSSL 177
+ + V PNA TL S+LSAC+SL
Sbjct: 373 LCPAMQLDGVVPNAVTLASLLSACASL 399
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 5/164 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL L + + A+ L+ ML NH TF + A ++ ++ + +H+++++
Sbjct: 428 NALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVR 487
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTWTTIISGLSKCGFHKEAI 152
G + I + L+ Y + AH+IF+ + D++ W+ +I+G G + A+
Sbjct: 488 SGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAV 547
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+F + ++PN T SVL ACS G G + + + N
Sbjct: 548 LLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIEN 591
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)
Query: 59 NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD---IFIQNSLLHFYVTVK 115
C S HY T++L + +H H I G LH I + + L Y
Sbjct: 81 RCDSLLRHYAATRSLNKTKI---------LHGHTITSGLLHSPNFIHLPSHLAVSYAFCG 131
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVL 171
+ A ++F+ + P + W II GFH +A+ +F C P+ T V+
Sbjct: 132 CVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVI 191
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
ACS + +G IH +L + +N+ + N++L
Sbjct: 192 KACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLL 226
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ Q+ Q A+ LY++M+ + N YTF+ L ACS + + G++IH HV
Sbjct: 416 MISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSE 475
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
++ +QN+L+ Y + A F + D+V+W +I ++ G +EA+D++
Sbjct: 476 LASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQ 535
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ V P+ T+ S LSAC+ GS +LG+ IH+ L+N
Sbjct: 536 TMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKN 575
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 7/186 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KI H++ +L+ Q+ + A+ LY +M + + T+ AL AC+ A ++
Sbjct: 303 KIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKE 362
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLS 143
G IH+ V + G + + +LL Y ++ +A +FN V +V WT +IS +
Sbjct: 363 GKAIHSRVFECG-FQSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYA 421
Query: 144 KCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G +EA++++ +PN T +VL+ACSS G + G IH H + +N+
Sbjct: 422 QAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVA 481
Query: 201 LDNAVL 206
+ NA++
Sbjct: 482 VQNALV 487
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L ++ A+ LY++M + T+ L +CS + ++ EIHA +I+
Sbjct: 113 NQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIE 172
Query: 95 YGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ ++ +QN+L++ Y + A ++F+ + D V+WT++IS + GF EA+
Sbjct: 173 APQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEAL 232
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
D++ +D ++P++ T S L AC+ L GKAIHA + + E++ +
Sbjct: 233 DLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESDFV 280
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 43/222 (19%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQP-----HILNTLLKLLTQSSTPQNAIPLYNKMLN- 59
L S S ++ +IHA II+ PQ + N L+ + + + + A +++ + N
Sbjct: 151 LGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNR 210
Query: 60 -----------------CPSSYNHY-------------TFTQALKACSLAHAHQKGLEIH 89
C + + Y TFT AL AC+ G IH
Sbjct: 211 DAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT---KLVDGKAIH 267
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
A ++ ++ F+ ++L++ Y D+ SA Q F + VV WT++++ + ++
Sbjct: 268 ARIVS-SNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYR 326
Query: 150 EAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
EA+D++ +D V + T V+ L AC+SLG+ K GKAIH+
Sbjct: 327 EALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHS 368
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q + A+ LY M + + T +L AC+++ + Q G EIH+ V+K
Sbjct: 515 NAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLK 574
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ +Q +L++ Y + +A +F + DV++WT + S ++ G + +D
Sbjct: 575 NQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLD 634
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
++ + ++PN T S+L CS G
Sbjct: 635 LYLEMVLHGIRPNEITFTSILVGCSHAG 662
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-NSV 127
+ + L+ C + +G +H H+++ GH + F+ N L+ Y +I A F N
Sbjct: 45 YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
V + ++S K G A++++ C +P+ T VL +CS++GS + +
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164
Query: 185 AIHAHSLR--NLNENNIILDNAVLD 207
IHA + + +N+ L NA+++
Sbjct: 165 EIHASIIEAPQIIRDNLSLQNALVN 189
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
LL+ T SS+ ++AI Y ML P+ +++ F LKA + H G +IHAHV K+G
Sbjct: 301 LLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFG 360
Query: 97 HL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID- 153
H + + NSL++ Y D+ +A Q+F+ + D V+W ++I+ L C F + +
Sbjct: 361 HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATL--CRFEEWELSL 418
Query: 154 ----MFCGIDVKPNANTLVSVLSACSSL-GSRKLGKAIHAHSLRN 193
+ +V P + TLVSV ACS + G +LGK +HA++LRN
Sbjct: 419 HLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRN 463
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLN----CPSSYNHYTFTQALKACSLAHAHQKGLEI 88
+ N LL ++ A+ L+ +M++ CP N TF L AC I
Sbjct: 603 VWNALLAGYARNEFDDQALRLFVEMISESEFCP---NATTFASVLPACVRCKVFSDKEGI 659
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +++K G D ++QN+L+ Y + + + IF + D+V+W T+I+G CG +
Sbjct: 660 HGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRY 719
Query: 149 KEAIDMF---------------------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+A+++ G+ KPN+ TL++VL C++L + GK IH
Sbjct: 720 DDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIH 779
Query: 188 AHSLRNLNENNIILDNAVLD 207
A++++ ++ + +A++D
Sbjct: 780 AYAVKQKLAMDVAVGSALVD 799
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK-GLEIHAHVI 93
N+++ L + + ++ L+ ML+ +T ACS + G ++HA+ +
Sbjct: 402 NSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTL 461
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G L + N+L+ Y + + A +F D+V+W T+IS LS+ +EA+
Sbjct: 462 RNGDLR-TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEAL- 519
Query: 154 MFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNII 200
M+ + V+P+ TL SVL ACS L ++G+ IH ++LRN L EN+ +
Sbjct: 520 MYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFV 572
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
P N T L C+ A KG EIHA+ +K D+ + ++L+ Y + A
Sbjct: 751 PFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLA 810
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---------VKPNANTLVSVL 171
++F+ + +V+TW +I G +EA+++F + ++PN T +++
Sbjct: 811 SRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIF 870
Query: 172 SACSSLG 178
+ACS G
Sbjct: 871 AACSHSG 877
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q A+ ++++M++ N +T LKAC+ A + G ++H V+K
Sbjct: 218 TMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKK 277
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ +DI I ++L+ Y ++F A +F+ + + +TWT++ISG ++ G ++AI +F
Sbjct: 278 MYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLF 337
Query: 156 CGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++ N T+V +LSAC SL S LGK +HA ++N E N+ + + ++ F
Sbjct: 338 RKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWF 393
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 101/197 (51%), Gaps = 6/197 (3%)
Query: 15 FKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F +++ ++P+ +++ ++ + + + L+ M+ N TF
Sbjct: 95 FDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCL 154
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LK+C + G ++H ++K G ++ + +++ HFY D+ SA IF+ + + DV
Sbjct: 155 LKSCGERCDAKLGQQVHCCIVK-GGWSNVIVDSAIAHFYAQCGDVASASAIFDKMAYRDV 213
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
++WTT+I+ + G +A+ MF + +PN T+ SVL AC+ + + GK +H
Sbjct: 214 ISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCA 273
Query: 190 SLRNLNENNIILDNAVL 206
L+ + +N+I + +A++
Sbjct: 274 VLKKMYKNDIHIGSALV 290
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ QS + AI L+ KM N+ T L AC + G E+HA +IK
Sbjct: 319 SMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKN 378
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA---I 152
++ I ++L+ FY + A +I ++ D ++WT +ISG + G + EA +
Sbjct: 379 SMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSL 438
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D VKPN T S L AC+ L + + G+ IH + + +N+ + ++++D
Sbjct: 439 DDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLID 493
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ A Q G +IH V K ++F+ +SL+ Y+ + A +F
Sbjct: 449 NTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVF 508
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+++ ++VTW II+G ++ G +EA+
Sbjct: 509 DAMPEHNLVTWKVIITGFAQNGLCEEAL 536
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +L+ C A ++ +HA ++ F+ N+L+ Y ++ A ++F
Sbjct: 49 NAEALASSLRDCGGADGVRR---VHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVF 105
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+ + VV+WT +++ K G + E + +F G V+ N+ T V +L +C K
Sbjct: 106 DEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAK 165
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
LG+ +H ++ +N+I+D+A+ F
Sbjct: 166 LGQQVHCCIVKG-GWSNVIVDSAIAHF 191
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q A+ +++ M++ N +T LKACS A + G ++H ++K
Sbjct: 252 TMITAYVQHGRGDKALEMFSVMVSEGYYPNEFTVCSILKACSDEKAFRFGKQLHGAIVKK 311
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ DI + ++L+ Y + ++F A +F+ + + +TWT++ISG ++ G ++AI +F
Sbjct: 312 LYKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTSMISGYAQSGHGEKAILLF 371
Query: 156 CGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+ ++ N T+V +LSAC S+ S +LGK +HA ++N + N+
Sbjct: 372 QNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKNSIQENL 418
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 99/197 (50%), Gaps = 6/197 (3%)
Query: 15 FKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F +++ ++P +++ ++ +S + L+ M+ N TF
Sbjct: 129 FHEISDARKVFDEMPDKSVVSWTAIINGYQKSGNYNEVVRLFLDMVGSGVRGNSLTFVCL 188
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LK+C + G ++H V+K G ++ + ++++HFY I SA +F+ + DV
Sbjct: 189 LKSCGEQCNTKLGRQVHCCVVK-GGWSNVIMDSAVVHFYAQCGHIASASTMFDKMASRDV 247
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
++WTT+I+ + G +A++MF + PN T+ S+L ACS + + GK +H
Sbjct: 248 ISWTTMITAYVQHGRGDKALEMFSVMVSEGYYPNEFTVCSILKACSDEKAFRFGKQLHGA 307
Query: 190 SLRNLNENNIILDNAVL 206
++ L +++I + +A++
Sbjct: 308 IVKKLYKDDIHVGSALV 324
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 59 NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
N P S + L++C ++ +HA ++ +F+ N+L++ Y +I
Sbjct: 77 NSPGSPDAEALASLLRSCGSVDDVRR---VHAISVRSPDGPGMFVANNLINAYARFHEIS 133
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS 175
A ++F+ + VV+WT II+G K G + E + +F G V+ N+ T V +L +C
Sbjct: 134 DARKVFDEMPDKSVVSWTAIINGYQKSGNYNEVVRLFLDMVGSGVRGNSLTFVCLLKSCG 193
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ KLG+ +H ++ +N+I+D+AV+ F
Sbjct: 194 EQCNTKLGRQVHCCVVKG-GWSNVIMDSAVVHF 225
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ QS + AI L+ M S N+ T L AC + + G E+HA +IK
Sbjct: 353 SMISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKN 412
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA---I 152
++ I ++L+ Y + A +I + D ++WT +ISG + G + EA +
Sbjct: 413 SIQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISGYNSVGHNAEALKSL 472
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
D VKPN T S L AC+ L + + G+ IH
Sbjct: 473 DDMLWDGVKPNTYTYSSALKACAKLEALQDGRRIHG 508
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ A Q G IH V K ++F+ +SL+ Y+ ++ A ++F
Sbjct: 483 NTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFLNVFVGSSLIDMYMRCGNVDDARRVF 542
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEA 151
+++ ++VTW II+G ++ G +EA
Sbjct: 543 DAMPEHNLVTWKVIITGFAQNGLCEEA 569
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 101/202 (50%), Gaps = 6/202 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
L F ++ + + ++P+ + N +L L +++ +A+ L+ +M+ + + T +
Sbjct: 113 LRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLS 172
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L C L L +H + +K G ++F+ N+L+ Y + + A +F +
Sbjct: 173 SVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALR 232
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
D+VTW +IIS + G A+++F G+ V P+ TLVS+ SA + G + K++H
Sbjct: 233 DLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVH 292
Query: 188 AH-SLRNLNENNIILDNAVLDF 208
+ R + +II NAV+D
Sbjct: 293 CYVRRRGWDVGDIIAGNAVVDM 314
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 87/179 (48%), Gaps = 5/179 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q A+ L++ M+ S + T A + + +H +V +
Sbjct: 238 NSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRR 297
Query: 95 YG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + DI N+++ Y + I +A +F+++ DVV+W T+I+G + G EA+
Sbjct: 298 RGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVR 357
Query: 154 MFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ + +KP T VS+L A S+LG+ + G +HA S++ ++ + ++D
Sbjct: 358 IYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDL 416
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFS 119
P + +TF ++A A + HA ++ G LH ++F SL+H Y+ +
Sbjct: 64 PLRPDSFTFPPLVRA---APGPASAAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAE 120
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSS 176
A+++F+ + DV W ++SGL + +A+ +F G V +A TL SVL C
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVL 180
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LG R L +H ++++ + + NA++D
Sbjct: 181 LGDRALALVMHVYAVKRGLSGELFVCNALID 211
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-HYTFTQALKACSLAHAHQKGLEIHAHVI 93
NTL+ Q+ A+ +YN M N TF L A S A Q+G+ +HA I
Sbjct: 340 NTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSI 399
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+++ L+ Y + A +F + W II+GL G +A++
Sbjct: 400 KTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALN 459
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+F + +KP+ T VS+L+ACS G G++
Sbjct: 460 LFSQMQQEGIKPDNVTFVSLLAACSHAGLVDQGRS 494
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 9 LKPTLSFKQLNQI-----HAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS 63
LK TL F+Q + H Q P + NTL+ + + L+ + +
Sbjct: 52 LKRTLFFRQTHYSFLLFSHTQF---PNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLN 108
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
+ +TF LKAC+ A + G+++H+ V+K G HD+ SLL Y + AH++
Sbjct: 109 LHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKV 168
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSR 180
F + VVTWT + SG + G H+EAID+F + V+P++ +V VLSAC +G
Sbjct: 169 FEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDL 228
Query: 181 KLGKAIHAH 189
G+ I H
Sbjct: 229 DSGEWIVKH 237
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 5/196 (2%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
+LN H +IP+ ++ L T + + AI L+ KM+ + Y Q L
Sbjct: 161 RLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLS 220
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC G I H+ + + F++ +L++ Y + A +F+S+ D+VT
Sbjct: 221 ACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVT 280
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
W+T+I G + F KE I+ F + ++KP+ ++V LS+C+SLG+ LG+ +
Sbjct: 281 WSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLID 340
Query: 192 RNLNENNIILDNAVLD 207
R+ N+ + NA++D
Sbjct: 341 RHEFLTNLFMANALID 356
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116
++ PSS + + L + + H K ++H +I + HD F+ N LL + +
Sbjct: 3 IVTVPSSTSKVQQIKTLISVASTFNHLK--QVHVSLIHHHLHHDTFLVNLLLKRTLFFRQ 60
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 173
+ +F+ FP++ + T+I+G E +D+F I + + T VL A
Sbjct: 61 THYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKA 120
Query: 174 CSSLGSRKLGKAIHA 188
C+ +RKLG +H+
Sbjct: 121 CTRASNRKLGIDLHS 135
Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T+++ +S P+ I + +ML + ++ L +C+ A G + + +
Sbjct: 282 STMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ L ++F+ N+L+ Y + ++F + D+V ISGL+K G K + +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + + P+ +T + +L C G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAG 428
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQ---NAIPLYNKMLNCPSSY-NHYTFTQALKACSLAH 80
+IP+P N+L++ L+ ++ + + +Y +ML S N +T ALKACS+
Sbjct: 86 QIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALKACSVVP 145
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTII 139
A +G ++H+ + G ++Q LL+ Y +++ A +F+ +V ++ W+ +I
Sbjct: 146 ALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMI 205
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
G S+ G EA+ +F + DV P+ T+VSV+SAC+ G+ LG+ +HA R
Sbjct: 206 GGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGIT 265
Query: 197 NNIILDNAVLDF 208
++ L A++D
Sbjct: 266 VDLELSTALIDM 277
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + + T + AC+ A A G +HA + + G D+ + +L+
Sbjct: 216 EALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALI 275
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
Y I A +F+++ D W+ +I GL+ G + A+ +F + V+PN
Sbjct: 276 DMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNV 335
Query: 166 TLVSVLSACSSLG 178
T + VLSAC+ G
Sbjct: 336 TFIGVLSACAHSG 348
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 98/171 (57%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+++ AI L+ M Y F+ L AC + + G ++H V+K G D
Sbjct: 246 LSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 305
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
++ N+L+ Y + + SA IF+++ D VT+ T+I+GLS+CG+ ++A+++F +
Sbjct: 306 TYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQL 365
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++P++NTL S++ ACSS G+ G+ +HA++ + +N ++ A+L+
Sbjct: 366 DGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNL 416
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M N++TF A+KA S ++G ++HA + K
Sbjct: 644 NALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITK 703
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + + N+++ Y I A + F + + V+W +I+ SK GF EA+D
Sbjct: 704 TGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDS 763
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+PN TLV VLSACS +G
Sbjct: 764 FDQMIHSNVRPNHVTLVGVLSACSHIG 790
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE-IHAHVI 93
N ++K L S L+ +M+N + N TF+ L+AC +E IHA +I
Sbjct: 138 NKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARII 197
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + N L+ Y + A ++F+ + D +W +ISGLSK EAI
Sbjct: 198 YQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIR 257
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+FC + + P SVLSAC + S ++G+ +H L+
Sbjct: 258 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 299
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ TQ + A+ + +ML+ + T A+ AC+ A ++G +IHA
Sbjct: 544 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 603
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ QN+L+ Y +I A+ F D + W ++SG + G ++EA+ +F
Sbjct: 604 GFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 663
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
++ + N T S + A S + K GK +HA
Sbjct: 664 ARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHA 699
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT+ LK C + G +IH+ +IK + ++ + L+ Y + + +A I
Sbjct: 472 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
DVV+WTT+I+G ++ F +A+ F + ++ + L + +SAC+ L + K
Sbjct: 532 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 591
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
G+ IHA + + +++ NA++
Sbjct: 592 EGQQIHAQACVSGFSSDLPFQNALV 616
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ L+Q + A+ L+ +M + T + ACS G ++HA+ K
Sbjct: 341 NTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTK 400
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I+ +LL+ Y DI +A F +VV W ++ + + +
Sbjct: 401 LGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 460
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ PN T S+L C LG +LG+ IH+ ++ + N + + ++D
Sbjct: 461 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLID 516
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 59 NCPSSYNHYTFTQALKACSLAHAH-QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
NC NH T L+ C + +G ++H+ ++K G ++ + LL FY+ D+
Sbjct: 60 NCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDL 119
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
A ++F+ + + TW +I L+ + +F + +V PN T VL AC
Sbjct: 120 DGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC 179
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 106/196 (54%), Gaps = 11/196 (5%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
I QI+ + + N++++ +++P A+ LY KML+ +++T+ LKAC
Sbjct: 79 HIFDQIV-LKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDL 137
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G ++HA V+ G D+++ NS+L Y D+ +A +F+ ++ D+ +W T++
Sbjct: 138 LLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMM 197
Query: 140 SGLSKCGFHKEAIDMFCGIDVKPNA-----NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
SG K G + A ++F D++ + TL+++LSAC + K+GK IH + +RN
Sbjct: 198 SGFVKNGEARGAFEVFG--DMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNG 255
Query: 195 NENNI---ILDNAVLD 207
+ L N+++D
Sbjct: 256 ESGRVCNGFLMNSIID 271
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ + A ++ M + T L AC + G EIH +V++
Sbjct: 194 NTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVR 253
Query: 95 YGHLHDI---FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
G + F+ NS++ Y + + A ++F + DVV+W ++ISG KCG +A
Sbjct: 254 NGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQA 313
Query: 152 IDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+++F + P+ T++SVL+AC+ + + +LG + ++ ++ N+++ A++
Sbjct: 314 LELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALI 371
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + A+ L+ +M+ + + T L AC+ A + G + ++V+K
Sbjct: 298 NSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVK 357
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G++ ++ + +L+ Y + A ++F+ + ++ T +++G G +EAI +
Sbjct: 358 RGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISI 417
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
F G V P+ +VLSACS G GK I R+
Sbjct: 418 FYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRD 459
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 61 PSSYNHYTFTQA---LKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKD 116
PSS + + Q L++ + + + + L++HAHV G L + ++ L Y
Sbjct: 14 PSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGH 73
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 173
+ A IF+ +V + W ++I G + A+ ++ + KP+ T VL A
Sbjct: 74 MPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA 133
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
C L R++G+ +HA + E ++ + N++L
Sbjct: 134 CGDLLLREMGRKVHALVVVGGLEEDVYVGNSIL 166
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+++ AI L+ M Y F+ L AC + + G ++H V+K G D
Sbjct: 223 LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 282
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
++ N+L+ Y + ++ SA IF+++ D VT+ T+I+GLS+CG+ ++A+++F +
Sbjct: 283 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 342
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++P++NTL S++ ACS+ G+ G+ +HA++ + +N ++ A+L+
Sbjct: 343 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 393
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M N++TF A+KA S ++G ++HA + K
Sbjct: 621 NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 680
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + + N+L+ Y I A + F V + V+W II+ SK GF EA+D
Sbjct: 681 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDS 740
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+PN TLV VLSACS +G
Sbjct: 741 FDQMIHSNVRPNHVTLVGVLSACSHIG 767
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ TQ + A+ + +ML+ + T A+ AC+ A ++G +IHA
Sbjct: 521 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 580
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ QN+L+ Y I ++ F D + W ++SG + G ++EA+ +F
Sbjct: 581 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 640
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
++ + N T S + A S + K GK +HA
Sbjct: 641 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHA 676
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE-IHAHVI 93
N ++K L + L+ +M++ + N TF+ L+AC +E IHA ++
Sbjct: 115 NKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIL 174
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + N L+ Y + A ++F+ + D +W +ISGLSK EAI
Sbjct: 175 YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIR 234
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+FC + + P SVLSAC + S ++G+ +H L+
Sbjct: 235 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 276
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT+ LK C + G +IH+ +IK + ++ + L+ Y + + +A I
Sbjct: 449 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
DVV+WTT+I+G ++ F +A+ F + ++ + L + +SAC+ L + K
Sbjct: 509 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 568
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
G+ IHA + + +++ NA++
Sbjct: 569 EGQQIHAQACVSGFSSDLPFQNALV 593
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ L+Q + A+ L+ +M + T + ACS +G ++HA+ K
Sbjct: 318 NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK 377
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I+ +LL+ Y DI +A F +VV W ++ + + +
Sbjct: 378 LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 437
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ PN T S+L C LG +LG+ IH+ ++ + N + + ++D
Sbjct: 438 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 493
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 65 NHYTFTQALKACSLAHAH-QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
NH T L+ C + +G ++H+ ++K G + + L FY+ D++ A ++
Sbjct: 43 NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKV 102
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + + TW +I L+ E +F + +V PN T VL AC GS
Sbjct: 103 FDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG-GSV 161
Query: 181 KLG--KAIHAHSLRNLNENNIILDNAVLDF 208
+ IHA L ++ ++ N ++D
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDL 191
>gi|222629606|gb|EEE61738.1| hypothetical protein OsJ_16261 [Oryza sativa Japonica Group]
Length = 767
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ + +A+ L++ ML +HYT ALKAC + IH+ +IK
Sbjct: 391 NALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIK 450
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS-KCGFHKEAID 153
G+ + + SL++ Y + + SA I++S+ PD+V+ T +ISG + + ++A++
Sbjct: 451 LGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAME 510
Query: 154 MFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+FC I K + L SVL C+S+ S + G IHA+ + +I LDNA++D
Sbjct: 511 LFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVD 567
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L C+ + + G +IHA++ K + DI + N+L+ Y + A + F+ +
Sbjct: 527 LSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKRAFDEMP 586
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ +V++WT++I+ + G ++A+ +F + V+PN T +S+LSAC G
Sbjct: 587 YRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCG 639
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
++ P+ A+ L+ M + N +T+ A AC+ A + G ++HA K D+F
Sbjct: 298 RNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMF 357
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+Q++L+ ++ + A Q+F + DVV+W +I G + G +A+ +F +
Sbjct: 358 VQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEA 417
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ P+ TL S L AC +G + IH+
Sbjct: 418 MIPDHYTLGSALKACGIVGVAVNVELIHS 446
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIK-YGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
N F L C + A ++G +H V D+ + L+ FY D+ +A ++
Sbjct: 56 NLNIFRFLLLCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKV 115
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSR 180
F+ + VV+WT ++SG ++ G +EA+++F +PN T S SAC+ G
Sbjct: 116 FDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCA 175
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+ G+ +HA + + ++ + +A++D
Sbjct: 176 RSGEQVHACAAKGRFAGDMFVQSALMD 202
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 3/179 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ + L L Q+ P A+ ++ +M + + + + AC+ + + G +H +V
Sbjct: 396 VWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYV 455
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK DI + +L+ Y K A +FN + + DVV W T+I+G +KCG + A+
Sbjct: 456 IKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLAL 515
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+MF + V+P++ T+VS+LSAC+ L LG H + ++N E+ + + A++D
Sbjct: 516 EMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDM 574
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 14 SFKQLN---QIHAQII---------KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLN 59
S K LN QIHA++I I P ++ N+L++ ++ Q AI Y M
Sbjct: 61 SCKYLNPLLQIHARLIVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSY 120
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
+ YTFT LKAC+ A +G+ IH + D+FI L+ Y + + +
Sbjct: 121 MGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDN 180
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACS 175
A ++F+ + DV +W +ISGLS+ EA+++F + V+P++ +++++ A S
Sbjct: 181 ARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVS 240
Query: 176 SLGSRKLGKAIHAHSLRN 193
L K+IH + +R
Sbjct: 241 RLEDVDSCKSIHGYVVRR 258
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+KG E+H + ++ G DI + ++ Y ++ A + F S+ D+V W+ +S L
Sbjct: 345 EKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSAL 404
Query: 143 SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ G+ EA+ +F + +KP+ L S++SAC+ + S +LGK +H + ++
Sbjct: 405 VQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIK 457
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T+ P+ A+ ++ ++ + T L AC+L G+ H ++IK
Sbjct: 499 NTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIK 558
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN-SVVFPDVVTWTTIISGLSKCGFHKEAID 153
G ++ ++ +L+ Y + +A +F+ + D V+W +I+G G EAI
Sbjct: 559 NGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAIS 618
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + V+PN T V++L A S L + A HA +R ++ ++ N+++D
Sbjct: 619 TFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDM 676
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + AI +N+M N TF L A S ++ + HA +I+
Sbjct: 601 NVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIR 660
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I NSL+ Y + + + F+ + ++W ++SG + G + A+ +
Sbjct: 661 MGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALAL 720
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
F + V ++ + +SVLSAC G + G+ I
Sbjct: 721 FSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNI 755
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQ 83
K+P + N ++ L+QSS P A+ ++ +M + + + A S
Sbjct: 187 KMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVD 246
Query: 84 KGLEIHAHVIK---YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
IH +V++ +G + NSL+ Y ++ AHQIF+ + D ++W T+++
Sbjct: 247 SCKSIHGYVVRRCVFG-----VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMA 301
Query: 141 GLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
G G + E + + + +K N ++V+ + A + + GK +H ++L+ +
Sbjct: 302 GYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTS 361
Query: 198 NIILDNAVL 206
+I++ ++
Sbjct: 362 DIVVATPIV 370
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+++ AI L+ M Y F+ L AC + + G ++H V+K G D
Sbjct: 263 LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 322
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
++ N+L+ Y + ++ SA IF+++ D VT+ T+I+GLS+CG+ ++A+++F +
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 382
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++P++NTL S++ ACS+ G+ G+ +HA++ + +N ++ A+L+
Sbjct: 383 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M N++TF A+KA S ++G ++HA + K
Sbjct: 661 NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 720
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + + N+L+ Y I A + F V + V+W II+ SK GF EA+D
Sbjct: 721 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDS 780
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+PN TLV VLSACS +G
Sbjct: 781 FDQMIHSNVRPNHVTLVGVLSACSHIG 807
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ TQ + A+ + +ML+ + T A+ AC+ A ++G +IHA
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ QN+L+ Y I ++ F D + W ++SG + G ++EA+ +F
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
++ + N T S + A S + K GK +HA
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHA 716
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE-IHAHVI 93
N ++K L + L+ +M++ + N TF+ L+AC +E IHA ++
Sbjct: 155 NKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIL 214
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + N L+ Y + A ++F+ + D +W +ISGLSK EAI
Sbjct: 215 YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIR 274
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+FC + + P SVLSAC + S ++G+ +H L+
Sbjct: 275 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT+ LK C + G +IH+ +IK + ++ + L+ Y + + +A I
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
DVV+WTT+I+G ++ F +A+ F + ++ + L + +SAC+ L + K
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
G+ IHA + + +++ NA++
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALV 633
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ L+Q + A+ L+ +M + T + ACS +G ++HA+ K
Sbjct: 358 NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK 417
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I+ +LL+ Y DI +A F +VV W ++ + + +
Sbjct: 418 LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 477
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ PN T S+L C LG +LG+ IH+ ++ + N + + ++D
Sbjct: 478 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 65 NHYTFTQALKACSLAHAH-QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
NH T L+ C + +G ++H+ ++K G + + L FY+ D++ A ++
Sbjct: 83 NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKV 142
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + + TW +I L+ E +F + +V PN T VL AC GS
Sbjct: 143 FDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG-GSV 201
Query: 181 KLG--KAIHAHSLRNLNENNIILDNAVLDF 208
+ IHA L ++ ++ N ++D
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDL 231
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L++ ++ P++A+ L+ +ML+ S + +T +K+CS G + A+
Sbjct: 139 NILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAF 198
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + D F+ NSL+H Y + D+ +AH +F++V V+ W +I+G K G KE ++
Sbjct: 199 KRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVE 258
Query: 154 MFCG-IDVKP--NANTLVSVLSACSSLGSRKLGKAIHAHS-----LRNLNENNIILD 202
MF G ++V+ + TL+SV +AC LG LG+ I ++ LR+ N ++D
Sbjct: 259 MFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVD 315
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + + ++ ML + ++ T AC G I + +
Sbjct: 241 NAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEE 300
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L + +L+ Y ++ A ++F+ + DVV W+ +ISG ++ +EA+ +
Sbjct: 301 KGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAI 360
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F G +V PN T+VSVLSAC+ LG+ + GK +H++ R +IL A++DF
Sbjct: 361 FNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDF 417
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQS + A+ ++N+M + N T L AC++ A + G +H+++ + +
Sbjct: 349 TQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTV 408
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ +L+ FY I A + F S+ + TWT +I G++ G +EA+++F +
Sbjct: 409 ILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEA 468
Query: 159 DVKPNANTLVSVLSACS 175
+++P T + VL ACS
Sbjct: 469 NIEPTDVTFIGVLLACS 485
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 11/210 (5%)
Query: 5 GLKSLKPTLSFKQ--LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
L SL +SF NQI A P NT+++ +S P A+ L+++M S
Sbjct: 77 ALVSLSAPMSFAAQIFNQIQA-----PNIFTWNTMIRGFAESENPSPAVELFSQMHAASS 131
Query: 63 SY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+ +TF KA + G IH+ V++ G F+QNSL+H Y SA+
Sbjct: 132 ILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAY 191
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
Q+F + + D V W ++I+G + G EA+ ++ + V+P+ T+VS+LSAC LG
Sbjct: 192 QVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELG 251
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG+ +H + ++ N NA+LD
Sbjct: 252 ALALGERVHMYMVKVGLVQNQHASNALLDL 281
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + P A+ LY +M + + +T L AC A G +H +++K
Sbjct: 206 NSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK 265
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N+LL Y + A ++F+ + VV+WT++I GL+ G EA+ +
Sbjct: 266 VGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKL 325
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ +KP+ T V VL ACS G
Sbjct: 326 FGELERQGLKPSEITFVGVLYACSHCG 352
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P N L++ + AI LY ML N YTF LKACS
Sbjct: 58 RIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCA 117
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IHAH G D+F+ +L+ Y+ A +F + DVV W +++G +
Sbjct: 118 GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYAN 177
Query: 145 CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR---NLNEN 197
G + AI DM ++PNA+TLVS+L + G+ G ++HA+ LR + NE
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE 237
Query: 198 NIILDNAVLD 207
+++ A+LD
Sbjct: 238 QVLIGTALLD 247
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
LL Q+ + A ++ KM C + T + ACS A Q G H VI G
Sbjct: 378 LLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRG 437
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ I NSL+ Y I + Q+F+ + D+V+W T+I+G G KEA +F
Sbjct: 438 LALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFL 497
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGK 184
+ +P+ T + +++ACS G GK
Sbjct: 498 SMKNQGFEPDDVTFICLIAACSHSGLVTEGK 528
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ AL+ C+ + G ++HA + K G D+ NSLL Y I A +F+ +
Sbjct: 308 SVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEI 367
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D +++ ++SG + G +EA +F + +V+P+ T+VS++ ACS L + + G+
Sbjct: 368 AIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGR 427
Query: 185 AIHA 188
H
Sbjct: 428 CSHG 431
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 84 KGLEIHAHVIKY---GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+G +HA+ ++ + + I +LL Y K + A ++F+ + + VTW+ +I
Sbjct: 219 QGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIG 278
Query: 141 GLSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLGSRKLGKAIHA 188
G C EA ++F + V+ +A ++ S L C+SL ++G +HA
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHA 330
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A Q+F+ + PD + +I S G AID++ + V PN T VL ACS+
Sbjct: 52 ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSA 111
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L G+ IHAH+ ++ + A++D
Sbjct: 112 LADLCAGRTIHAHAAAVGLHTDLFVSTALIDL 143
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 102/188 (54%), Gaps = 9/188 (4%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAH 82
+++ T++ ++ Q ++ L+++M CP + Y + L AC +
Sbjct: 202 LQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCP---DKYVLSSVLSACLMLKFL 258
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+ G +IH +V++ G + D+ + N + FY + ++F+ +V +VV+WTT+I+G
Sbjct: 259 EGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGC 318
Query: 143 SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+ FH++A+D+F + P+A SVL++C SL + + G+ +HA++++ +N+
Sbjct: 319 MQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDD 378
Query: 200 ILDNAVLD 207
+ N ++D
Sbjct: 379 FVKNGLID 386
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116
M +C N Y ++AC+ L+IH V+K G++ D+++ SL+ FY
Sbjct: 132 MRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHAC 191
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 173
I A +F+ + TWTTII+G SK G + ++ +F + V P+ L SVLSA
Sbjct: 192 IDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSA 251
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
C L + GK IH + LR+ ++ + N +DF
Sbjct: 252 CLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDF 286
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ S + ++ LY + N +TF + A S + + G + H VIK G D
Sbjct: 521 TQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDP 580
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ N+L+ Y I AH+ F S + D W ++I+ ++ G ++A+ +F +
Sbjct: 581 FVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIME 640
Query: 159 DVKPNANTLVSVLSACSSLGSRKLG 183
+KPN T V VLSACS G LG
Sbjct: 641 GLKPNYVTFVGVLSACSHTGLLDLG 665
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+S ++A+ L+ +M + + + T L +C A +KG ++HA+ IK
Sbjct: 313 TVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKV 372
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+D F++N L+ Y + A ++FN + D+V++ +I G S+ EA+D+F
Sbjct: 373 NIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLF 432
Query: 156 CGIDVKPNANTL---VSVLSACSSLGSRKLGKAIHA 188
+ + ++ TL VS+L +SL +L IH
Sbjct: 433 REMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHG 468
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 85/176 (48%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ ++ A+ L+ +M SS F L + + + +IH +IK
Sbjct: 413 NAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIK 472
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
YG D F ++L+ Y + A +F + D+V WT + SG ++ ++E++ +
Sbjct: 473 YGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKL 532
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + + KPN T +V++A S++ S + G+ H ++ +++ + N ++D
Sbjct: 533 YKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVD 588
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 87 EIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH+ ++ +G H HDIF+ N+LLH Y + + A+++F+++ ++VTW++++S +
Sbjct: 59 KIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHH 118
Query: 146 GFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
EA+ +F + KPN L SV+ AC+ G IH ++ ++ +
Sbjct: 119 SHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYV 178
Query: 202 DNAVLDF 208
+++DF
Sbjct: 179 CTSLIDF 185
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 43/191 (22%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIK-IPQPHILNTL-------------------LKLLTQSS 45
L +L+ S K L QIHA IIK +P P T+ L LL Q
Sbjct: 41 LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 100
Query: 46 TPQNAIPLYNKMLNCPSSYNH---------------------YTFTQALKACSLAHAHQK 84
TP +PLYN ++ ++ N+ YT LKAC+ + A ++
Sbjct: 101 TPN--LPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE 158
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G E+H IK G D+++ N+L+ Y I SA ++F++ D+V+WTT+I G K
Sbjct: 159 GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVK 218
Query: 145 CGFHKEAIDMF 155
GF +E + ++
Sbjct: 219 MGFAREGVGLY 229
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 117/210 (55%), Gaps = 13/210 (6%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
LK+ + + ++ ++H Q IK+ ++ NTL+++ ++A K+ +
Sbjct: 147 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSA----RKVFDTSP 202
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAH 121
+ ++T ++ ++G+ ++ +I+ +++ D+F+ N+L+ Y+ D A
Sbjct: 203 QRDLVSWTTMIQGYVKMGFAREGVGLY--IIRNSNVNLDVFVGNALVDMYLKCGDANFAR 260
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLG 178
++F + +VV+W ++ISGL++ G KE++ MF + VKP+ TLV+VL++C++LG
Sbjct: 261 KVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLG 320
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+LGK +HA+ RN + + NA++D
Sbjct: 321 VLELGKWVHAYLDRNQIRADGFIGNALVDM 350
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L Q + ++ ++ KM + T L +C+ + G +HA++ +
Sbjct: 275 NSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDR 334
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D FI N+L+ Y I A +F ++ DV ++T +I GL+ G +A+D+
Sbjct: 335 NQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDL 394
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGK 184
F + ++P+ T V VL+ACS +G + G+
Sbjct: 395 FSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 427
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC----SLAHAHQKGLE 87
++ N L + LT + + + LY KM + +T+T LKAC A KG E
Sbjct: 144 YVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKE 203
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHAH+ + G+ ++I +L+ Y + A +FN + +VV+W+ +I+ +K G
Sbjct: 204 IHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGK 263
Query: 148 HKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
EA+ F + D PN+ T+VSVL AC+SL + + G+ IH + LR
Sbjct: 264 AFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILR 313
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
SS N T L+AC+ A ++G IH ++++ G + + ++L+ Y +
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQ 340
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
++F+ + DVV+W ++IS G+ ++AI +F P T VSVL ACS G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400
Query: 179 SRKLGKAIHAHSLRN 193
+ GK + R+
Sbjct: 401 LVEEGKRLFESMWRD 415
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 11/180 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ L + + A+ ++L+ SS + T+ + C + GL +H H++
Sbjct: 50 NQLIQSLCKEGKLKQAL----RVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILD 105
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ L+ Y + + A ++F+ + W + L+ G +E + +
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165
Query: 155 FCG---IDVKPNANTLVSVLSAC--SSLGSRKL--GKAIHAHSLRNLNENNIILDNAVLD 207
+ I V+ + T VL AC S + L GK IHAH R +++ + ++D
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVD 225
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 5/185 (2%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ ++++ ++ +Q A+ L+ +ML + N +TF L +C + G
Sbjct: 119 MPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLG 178
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH+H+IK + +++ +SLL Y I A IF + DVV+ T IISG ++
Sbjct: 179 RQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQL 238
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G +EA+++F + ++ N T SVL+A S L + GK +H H LR+ + ++L
Sbjct: 239 GLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQ 298
Query: 203 NAVLD 207
N+++D
Sbjct: 299 NSLID 303
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + L C A ++G +HAH+IK +L ++++ L+ FYV + A +F
Sbjct: 57 NFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVF 116
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + +VV+WT +IS S+ G+ +A+ +F + +PN T +VL++C
Sbjct: 117 DVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFV 176
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
LG+ IH+H ++ E ++ + +++LD
Sbjct: 177 LGRQIHSHIIKLNYEAHVYVGSSLLD 202
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ ++ N+ T+T L A S A G ++H H+++ + +QNSL
Sbjct: 242 EEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSL 301
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGID---VKPN 163
+ Y ++ A +IF+++ V++W ++ G SK G +E +++F ID VKP+
Sbjct: 302 IDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPD 361
Query: 164 ANTLVSVLSACSSLGSRKLGKAI 186
+ T+++VLS CS G G I
Sbjct: 362 SVTVLAVLSGCSHGGLEDKGMDI 384
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY 67
SL L+F + +H+ P N L + + S +P +I +Y++M N
Sbjct: 58 SLAKDLAFARTLLLHSSD---STPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKL 114
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF LKAC+ G +I V+K+G D+++ N+L+H Y T K A ++F+ +
Sbjct: 115 TFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEM 174
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGK 184
+VV+W +I++ L + G + FC G P+ T+V +LSAC G+ LGK
Sbjct: 175 TERNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGK 232
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H+ + E N L A++D
Sbjct: 233 LVHSQVMVRELELNCRLGTALVD 255
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---- 158
+ +L+ Y + A +F +V +V TW+ +I GL++ GF +EA+ +F +
Sbjct: 249 LGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKES 308
Query: 159 DVKPNANTLVSVLSACSSLG 178
V+PN T + VL ACS G
Sbjct: 309 SVRPNYVTFLGVLCACSHTG 328
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACS----------LAHAHQKGLEIH 89
L Q + A+ L++KM+ S N+ TF L ACS H +K +I
Sbjct: 288 LAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIK 347
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFH 148
+I YG + DI + L+ A+ + F PD V W T+ LS C H
Sbjct: 348 PMMIHYGAMVDILGRAGRLN---------EAYDFIKKMPFEPDAVVWRTL---LSACSIH 395
Query: 149 KEAIDMFCGIDVKPN 163
+ D G VK
Sbjct: 396 HDEDDEGIGEKVKKR 410
>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 556
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQS +NA+ + +M S N +TF + C+ + G ++H H++ G + +
Sbjct: 293 TQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLGLMTFL 352
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV- 160
+ NS++ Y + SA +F + DVV+W+TII+G S+ G +EA + +
Sbjct: 353 SVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRRE 412
Query: 161 --KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
KPN TL SVLS C ++ + GK +HAH+L E ++ +A+++
Sbjct: 413 GPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTAMIQSALINM 462
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ +Q + A ++M N T L C ++G ++HAH +
Sbjct: 387 STIIAGYSQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALH 446
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G IQ++L++ Y I A +IF+ D+V+WT +I+G ++ G +EAID+
Sbjct: 447 VGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEAIDL 506
Query: 155 FCG---IDVKPNANTLVSVLSACSSLGSRKLG 183
F I +KP+ T + VL+ACS G LG
Sbjct: 507 FEKIPRIGLKPDPVTFIGVLTACSHAGLVDLG 538
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + +++M + YTF ALKAC+ A G +IH +K F+ N+L
Sbjct: 198 KEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDHGRQIHCQALKRSLEASSFVANTL 257
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNA 164
Y + ++F + +VV+WT II+ ++ G + A+ F I V PN
Sbjct: 258 ATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEIGVSPND 317
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSL 191
T +V+S C++LG + G+ +H H L
Sbjct: 318 FTFAAVISGCANLGKTEWGEQLHGHML 344
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 49 NAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
A+ L++KM P + + + ALK C L+ G +H + +K + +F+ ++L
Sbjct: 97 EALTLFSKMWVVPGLRMDPFILSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSAL 156
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y+ I QIF+++ +VV+WT II+G G+ KE + F + V ++
Sbjct: 157 VDMYMKFDKIQQGCQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDS 216
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
T L AC++LG+ G+ IH +L+ E + + N +
Sbjct: 217 YTFAIALKACANLGALDHGRQIHCQALKRSLEASSFVANTL 257
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 164
NS L V + A Q+F+ + D ++WTTIISG EA+ +F + V P
Sbjct: 52 NSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGL 111
Query: 165 NT----LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L L C + G+++H +S+++ +++ + +A++D
Sbjct: 112 RMDPFILSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDM 159
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N+L+K + +A+ Y +ML+ + YTFT +KAC+ + G +
Sbjct: 71 PDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIV 130
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+HV G+ + F+Q +L+ FY A ++F+ + ++ W ++ISG + G
Sbjct: 131 HSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLA 190
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+++F + +P++ T VSVLSACS LGS LG +H + N++L ++
Sbjct: 191 SEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSL 250
Query: 206 LD 207
++
Sbjct: 251 VN 252
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 16/189 (8%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
KS P ++ K +++ PQ I+ N+++ Q+ A+ ++NKM
Sbjct: 155 KSCTPRVARKVFDEM-------PQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEP 207
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ TF L ACS + G +H ++ G ++ + SL++ + D+ A +F
Sbjct: 208 DSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVF 267
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGS 179
+S+ +VV+WT +ISG G+ EA+++F CG V PN T V+VLSAC+ G
Sbjct: 268 DSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACG--VVPNRVTYVAVLSACAHAGL 325
Query: 180 RKLGKAIHA 188
G+ + A
Sbjct: 326 INEGRLVFA 334
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+ HAH++ G + LL I ++F SV PD + ++I S G
Sbjct: 28 QAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFG 87
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
F +A+ + + + P+ T SV+ AC+ L +LG +H+H + +N +
Sbjct: 88 FSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQA 147
Query: 204 AVLDF 208
A++ F
Sbjct: 148 ALVTF 152
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Query: 9 LKPTLSFKQLNQIHAQI--IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
LK TL F+Q + + P + N+L+ + + L+ + +
Sbjct: 52 LKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHG 111
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+TF LKAC+ A + + G+++H+ V+K G HD+ SLL Y + AH++F+
Sbjct: 112 FTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDE 171
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ VVTWT + SG + G H+EAID+F + VKP++ +V VLSAC +G G
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231
Query: 184 KAI 186
+ I
Sbjct: 232 EWI 234
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
+LN H +IP ++ L T S + AI L+ KM+ + Y Q L
Sbjct: 161 RLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLS 220
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDI----FIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
AC H L+ ++KY ++ F++ +L++ Y + A +F+S+V
Sbjct: 221 AC----VHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEK 276
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
D+VTW+T+I G + F KE I++F + ++KP+ ++V LS+C+SLG+ LG+
Sbjct: 277 DIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGI 336
Query: 188 AHSLRNLNENNIILDNAVLD 207
+ R+ N+ + NA++D
Sbjct: 337 SLIDRHEFLTNLFMANALID 356
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC++ H Q IH +I + HD F+ N LL + + ++ +F+ FP++
Sbjct: 23 ACTVNHLKQ----IHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFL 78
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ ++I+G E +D+F I + + T VL AC+ SRKLG +H+
Sbjct: 79 YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS 135
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T+++ +S P+ I L+ +ML + ++ L +C+ A G + + +
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ L ++F+ N+L+ Y + ++F + D+V ISGL+K G K + +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + + P+ +T + +L C G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAG 428
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L+ + AI L+++M S + +T T L AC+ + + G ++H ++ +
Sbjct: 69 SLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIREN 128
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+IF+ N+L+ Y + A+ +F + D+++W T+I G SK EA+ +F
Sbjct: 129 DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLF 188
Query: 156 CG--IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+++KP+ TL +L AC+SL S GK +H H LRN ++ + NA++D
Sbjct: 189 GDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDM 243
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 6/166 (3%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
+ ++ +++P I+ NT++ +++S P A+ L+ M+ + T L A
Sbjct: 150 MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPA 208
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ + +G E+H H+++ G D + N+L+ YV A +F+ + D++TW
Sbjct: 209 CASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITW 268
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
T +I+G GF AI F + ++P+ + +S+L ACS G
Sbjct: 269 TVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSG 314
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L+AC+ G +H +K H F N+LL Y + A +F+ +
Sbjct: 5 LQACANCGDVSLGRAVHGSGVKACVHWKTTFC-NTLLDMYAKCGVLDGAILVFDLMSVRT 63
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
VVTWT++I+ ++ G EAI +F +D V P+ T+ +VL AC+ GS + GK +H
Sbjct: 64 VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123
Query: 189 HSLRNLNENNIILDNAVLDF 208
+ N ++NI + NA++D
Sbjct: 124 YIRENDMQSNIFVCNALMDM 143
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K P P + N +++ ++ +AI +Y +M S + ++F LKACS A +
Sbjct: 132 KFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEM 191
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H + ++G D+F+QN L+ Y +I A+ +F +V +V+WT+IISG ++
Sbjct: 192 GRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQ 251
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G EA+ +F + +V+P+ LVSVL A + + + GK+IH
Sbjct: 252 NGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHG 298
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 3/168 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ P A+ ++++M + L+A + + G IH VIK G +
Sbjct: 251 QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFD 310
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ SL Y + A FN V P ++ W +ISG K G+ +EAI++F + +
Sbjct: 311 LLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKN 370
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++P++ T+ S ++AC+ +GS +L + + + + N++I++ +++D
Sbjct: 371 IRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLID 418
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 19/205 (9%)
Query: 19 NQIHAQIIKIPQPHILNTL-----------LKLL-TQSSTPQNAIPLYNKMLN-C-PSSY 64
N++ + I PQP + L LK L T S+ N +N + C S++
Sbjct: 13 NKVSSFIALCPQPFKIRPLDPPPFRFPASTLKFLETHYSSSLNLTTHFNNNKDDCNESTF 72
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
F +L S+ H +I+A ++ G + F+ L++ + ++ A ++F
Sbjct: 73 KPDKFYASLIDDSIHKTHLN--QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLF 130
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ PDV W I+ S+ GF AI+M+ + V P+ + VL ACS+L + +
Sbjct: 131 DKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALE 190
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
+G+ +H R+ E+++ + N ++
Sbjct: 191 MGRRVHGQIFRHGFESDVFVQNGLV 215
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++ P ++ N ++ ++ + AI L+ M + + T T ++ AC+ + +
Sbjct: 334 QVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLEL 393
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ ++ +D+ + SL+ Y + A +F+ + DVV W+ ++ G
Sbjct: 394 ARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGL 453
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G +E+I +F + V PN T V +L+AC + G
Sbjct: 454 HGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSG 490
>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 98/185 (52%), Gaps = 4/185 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
++P+P ++ +L +++ + A+ L+ M + TF L AC +
Sbjct: 222 EMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLK 281
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G EIH +I G ++ +++SLL Y + A Q+FN + ++V+W+ ++ G
Sbjct: 282 QGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYC 341
Query: 144 KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ G H++AI+MF ++ K + +VL AC+ L + +LGK IH +R N+I+++
Sbjct: 342 QNGEHEKAIEMFREMEEK-DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVES 400
Query: 204 AVLDF 208
A++D
Sbjct: 401 ALIDL 405
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ +M++ N +T + A+KAC + G H VI +G + I ++L +
Sbjct: 146 ALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAY 205
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNAN 165
Y K+ A ++F+ + PDV+ WT ++S SK ++EA+ +F G + P+ +
Sbjct: 206 MYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGS 265
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T +VL+AC +L K GK IH + N +N+++++++LD
Sbjct: 266 TFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDM 308
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+AI + N + S + L+ C + GL+ HAHV+K G D + NSLL
Sbjct: 43 DAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLL 102
Query: 109 HFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
Y + D+ ++F+ + D ++WT+++SG H +A+++F + ++PN
Sbjct: 103 SLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNK 162
Query: 165 NTLVSVLSACSSLGSRKLGKAIHA 188
TL S + AC LG +LG+ H
Sbjct: 163 FTLSSAVKACFELGEVRLGRCFHG 186
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I++ LL Q+ + AI ++ +M + Y F LKAC+ A + G
Sbjct: 325 MPRKNIVSWSALLGGYCQNGEHEKAIEMFREM----EEKDLYCFGTVLKACAGLAAVRLG 380
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
EIH ++ G ++ ++++L+ Y I A ++++ + +++TW ++S L++
Sbjct: 381 KEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQN 440
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G +EA+ F + +KP+ + ++VL+AC G + G+
Sbjct: 441 GRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGR 482
>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
Length = 795
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ QS + AI LY M PS TFT L ACS +G +IHA +
Sbjct: 192 NAMIAAYAQSGHFEEAIRLYEDMDVEPSVR---TFTSVLSACSNLGLLDQGRKIHALISS 248
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ +QN+LL Y K + A +IF + DVV+W+ +I+ ++ EAI+
Sbjct: 249 RGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEF 308
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + V+PN T SVL AC+S+G + G+A+H L N + ++ A++D
Sbjct: 309 YSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDL 365
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 4/172 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++L Q+ + A+ LY +M P N +T L AC+ A ++G IH+ +
Sbjct: 94 SMLTAYAQNGHYRAALDLYKRMDLQP---NPVVYTTVLGACASIKALEEGKAIHSRISGT 150
Query: 96 GHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L D+ ++NSLL Y + A ++F + V +W +I+ ++ G +EAI +
Sbjct: 151 KGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRL 210
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +DV+P+ T SVLSACS+LG G+ IHA E ++ L NA+L
Sbjct: 211 YEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALL 262
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 51 IPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ LY +M N P++ ++ + AC+ A + H+ + G + D + SL
Sbjct: 407 LELYREMKNTTKVPAT--KIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSL 464
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
++ Y ++ SA Q+F+ + D + WTT+I+G +K G H A+ ++ +++ +P+
Sbjct: 465 VNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSE 524
Query: 165 NTLVSVLSACSSLGSRKLGKAI 186
T + VL ACS G ++ GK +
Sbjct: 525 LTFMVVLYACSHAGLQEQGKQL 546
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
++F+ N ++ Y + SA F+++ + +W ++++ ++ G ++ A+D++ +D
Sbjct: 57 NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAH--SLRNLNENNIILDNAVL 206
++PN +VL AC+S+ + + GKAIH+ + L + ++IL+N++L
Sbjct: 117 LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGL-KLDVILENSLL 164
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI Y+KM N+YTF L AC+ + G +H ++ G+ + +L+
Sbjct: 305 AIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVD 364
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--VKPNANTL 167
Y + + A +F+ + D WT +I G SK G ++++ + K A +
Sbjct: 365 LYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKI 424
Query: 168 V--SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209
+ V+SAC+SLG+ A AHS +I D + DF+
Sbjct: 425 IYSCVISACASLGA--FADARQAHS-------DIEADGMISDFV 459
>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
Length = 796
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ QS + AI LY M PS TFT L ACS +G +IHA +
Sbjct: 193 NAMIAAYAQSGHFEEAIRLYEDMDVEPSVR---TFTSVLSACSNLGLLDQGRKIHALISS 249
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ +QN+LL Y K + A +IF + DVV+W+ +I+ ++ EAI+
Sbjct: 250 RGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEF 309
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + V+PN T SVL AC+S+G + G+A+H L N + ++ A++D
Sbjct: 310 YSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDL 366
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 5/173 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++L Q+ + A+ LY +M P N +T L AC+ A ++G IH+ +
Sbjct: 94 SMLTAYAQNGHYRAALDLYKRMDLQP---NPVVYTTVLGACASIEALEEGKAIHSRISGT 150
Query: 96 GHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAID 153
L D+ ++NSLL Y + A ++F + V +W +I+ ++ G +EAI
Sbjct: 151 KGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIR 210
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++ +DV+P+ T SVLSACS+LG G+ IHA E ++ L NA+L
Sbjct: 211 LYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALL 263
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 51 IPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ LY +M N P++ ++ + AC+ A + H+ + G + D + SL
Sbjct: 408 LELYREMKNTTKVPAT--KIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSL 465
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
++ Y ++ SA Q+F+ + D + WTT+I+G +K G H A+ ++ +++ +P+
Sbjct: 466 VNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSE 525
Query: 165 NTLVSVLSACSSLGSRKLGKAI 186
T + VL ACS G ++ GK +
Sbjct: 526 LTFMVVLYACSHAGLQEQGKQL 547
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
++F+ N ++ Y + SA F+++ + +W ++++ ++ G ++ A+D++ +D
Sbjct: 57 NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAH--SLRNLNENNIILDNAVL 206
++PN +VL AC+S+ + + GKAIH+ + L + ++IL+N++L
Sbjct: 117 LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGL-KLDVILENSLL 164
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI Y+KM N+YTF L AC+ + G +H ++ G+ + +L+
Sbjct: 306 AIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVD 365
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--VKPNANTL 167
Y + + A +F+ + D WT +I G SK G ++++ + K A +
Sbjct: 366 LYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKI 425
Query: 168 V--SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209
+ V+SAC+SLG+ A AHS +I D + DF+
Sbjct: 426 IYSCVISACASLGA--FADARQAHS-------DIEADGMISDFV 460
>gi|414865182|tpg|DAA43739.1| TPA: hypothetical protein ZEAMMB73_281838 [Zea mays]
Length = 1925
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 98/181 (54%), Gaps = 5/181 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + LN ++ + + + LY ++ C +++TF ++AC+ + G E+
Sbjct: 104 PAVYSLNLAVRCFSDHGFHRELLHLYREL--CCFGSDNFTFPPVIRACTAVSCLRLGREM 161
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H V++ GH ++ +Q +LL Y I + ++F+ +V D+++W ++SG S
Sbjct: 162 HCRVLRTGHGGNVGVQTALLDLYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSLNECF 221
Query: 149 KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+EA++M + ++PNA+T V ++ C S+G R +G ++HA +L+ N+ L +A+
Sbjct: 222 REAVEMLQEMQQGGMRPNASTFVGIVGMCGSVGDRDVGDSLHAFALKGGVINDESLTSAL 281
Query: 206 L 206
+
Sbjct: 282 I 282
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 92/200 (46%), Gaps = 26/200 (13%)
Query: 21 IHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY---------NHYTFTQ 71
+H IIK L L S + +Y+K+ SS + T
Sbjct: 363 VHGMIIK----------LGLAEHVSVASALVSMYSKLGKLDSSLLLFCCCVAPDATTIMN 412
Query: 72 ALKACSLAHAHQKGLEIHAHVI--KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+ C IHA+ + K+ H + N+LL Y +DI ++H +F +
Sbjct: 413 VISGCRYTKDLHMAKSIHAYAVRNKFESYHSVM--NALLAMYADCRDISTSHTLFQKMEV 470
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
+++W T+ISG ++ G + +FC + +V+ + TL+ ++S+ S G +G+++
Sbjct: 471 RMLISWNTMISGFAEIGDSDTCLILFCQMFHEEVQFDLVTLIGLISSFSVPGDAIVGESV 530
Query: 187 HAHSLRNLNENNIILDNAVL 206
H+ ++++ +++ L NA++
Sbjct: 531 HSLAIKSGCNSDVSLTNALI 550
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + + L+ +M + ++ T + + S+ G +H+ IK
Sbjct: 477 NTMISGFAEIGDSDTCLILFCQMFHEEVQFDLVTLIGLISSFSVPGDAIVGESVHSLAIK 536
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L+ Y + + Q+F+S + +T+ ++SG K + + +
Sbjct: 537 SGCNSDVSLTNALITMYANCGIVEAGQQLFDSCCSRNTITYNALMSGYRKNNISAKILPL 596
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
F + D KPN TL+++L C S + GK IH++++RN
Sbjct: 597 FYQMVENDEKPNLVTLLNLLPVCQS---QLQGKCIHSYAVRNF 636
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ + +M N TF + C G +HA +K G ++D + ++L
Sbjct: 222 REAVEMLQEMQQGGMRPNASTFVGIVGMCGSVGDRDVGDSLHAFALKGGVINDESLTSAL 281
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPN 163
+ Y D+ S+ +F+ D+V++ ++IS + KEA ++F C + V+PN
Sbjct: 282 ITMYAAFDDLSSSRMVFDLHPVKDLVSFNSMISAYMQHHIWKEAFEIFRLMHC-VAVRPN 340
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHA 188
T+VSVL +CS G+++H
Sbjct: 341 LVTVVSVLPSCSDFFGINHGESVHG 365
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 82/176 (46%), Gaps = 6/176 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ +++ +PL+ +M+ N T L C + +G IH++ ++
Sbjct: 578 NALMSGYRKNNISAKILPLFYQMVENDEKPNLVTLLNLLPVC---QSQLQGKCIHSYAVR 634
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + S + Y +I +IF+ + +++ W +S +C +D
Sbjct: 635 NFTRLETPLFTSAMGMYSRFNNIEYCSKIFSLIGARNLIVWNAFLSACVQCKQADMVVDC 694
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++V+P+A T+++++SACS LG+ I A L+ NI++ NA++D
Sbjct: 695 FKHMLFLNVRPDAVTMLALISACSQLGNAYFAACIMAVILQKGFSTNILVLNALID 750
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAH 91
+ N L Q + + ML + T + ACS L +A+ I A
Sbjct: 674 VWNAFLSACVQCKQADMVVDCFKHMLFLNVRPDAVTMLALISACSQLGNAYFAAC-IMAV 732
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+++ G +I + N+L+ + I A ++F+S V D VTW +I+ S G + A
Sbjct: 733 ILQKGFSTNILVLNALIDTHSRCGSISLARELFDSSVEKDSVTWGAMINAYSMHGNGEAA 792
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLG----SRKLGKAIHA 188
+D+F + V P+ T VS+LSAC+ G R L K++ A
Sbjct: 793 LDLFSMMIDSGVDPDDITFVSILSACAHNGLVEQGRTLFKSLQA 836
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSK 144
E+HAH+ G + D F+ L+ YV SA +F P V + + S
Sbjct: 59 ELHAHLAVAGAIQDTFVVTGLVERYVYFGKAASAALLFAETYRSRPAVYSLNLAVRCFSD 118
Query: 145 CGFHKEAIDMFCGIDVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
GFH+E + ++ + + N T V+ AC+++ +LG+ +H LR + N+ +
Sbjct: 119 HGFHRELLHLYRELCCFGSDNFTFPPVIRACTAVSCLRLGREMHCRVLRTGHGGNVGVQT 178
Query: 204 AVLDF 208
A+LD
Sbjct: 179 ALLDL 183
Score = 39.7 bits (91), Expect = 0.87, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 32/173 (18%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ Q + A ++ M N T L +CS G +H +I
Sbjct: 309 FNSMISAYMQHHIWKEAFEIFRLMHCVAVRPNLVTVVSVLPSCSDFFGINHGESVHGMII 368
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + + ++L+ Y + + S+ +F V PD T +ISG C + K+
Sbjct: 369 KLGLAEHVSVASALVSMYSKLGKLDSSLLLFCCCVAPDATTIMNVISG---CRYTKDL-- 423
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ K+IHA+++RN E+ + NA+L
Sbjct: 424 ---------------------------HMAKSIHAYAVRNKFESYHSVMNALL 449
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 5/204 (2%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L + + ++ A KI +P + NTLL Q Q+ I L+ +M + +
Sbjct: 358 LASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDR 417
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L +CS G ++H+ +++ +D+F+ + L+ Y I A IFN
Sbjct: 418 TTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNK 477
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ DVV W +IISGL+ +KEA D F + + P ++ S++++CS L S G
Sbjct: 478 MTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHG 537
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+ IHA +++ + N+ + +A++D
Sbjct: 538 RQIHAQVMKDGYDQNVYVGSALID 561
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/200 (23%), Positives = 101/200 (50%), Gaps = 10/200 (5%)
Query: 14 SFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+F+ IHA +++ H+ N+L+ + T+ A+ ++ + S ++
Sbjct: 265 AFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESL----PSVTIVSWN 320
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ + K +E+ + + + G + ++LL + +D+ SA +F+ + P
Sbjct: 321 ILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRP 380
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
V TW T++SG + H++ I++F + +V+P+ TL +LS+CS LG G+ +H
Sbjct: 381 SVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVH 440
Query: 188 AHSLRNLNENNIILDNAVLD 207
+ S+R L N++ + + ++D
Sbjct: 441 SASVRFLLHNDMFVASGLVD 460
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ LT S + A + +M ++ + +CS + G +IHA V+K
Sbjct: 487 NSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMK 546
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ ++++ ++L+ Y ++ A F++++ ++V W +I G ++ G +A+++
Sbjct: 547 DGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVEL 606
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + KP+A T ++VL+ CS G
Sbjct: 607 FEYMLTTEQKPDAVTFIAVLTGCSHSG 633
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT++ L +S A+ +Y +M H+T L AC A G H +
Sbjct: 109 NTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAV 168
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + F++N+LL Y + A ++F + P+ V++T ++ GL++ G +A+
Sbjct: 169 KVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALR 228
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSR--------KLGKAIHAHSLRNLNENNIILD 202
+F C V + ++ SVL AC+ + +LG+AIHA +R ++ +
Sbjct: 229 LFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVG 288
Query: 203 NAVLD 207
N+++D
Sbjct: 289 NSLID 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC--------SLAHAHQKGLEIHAHV 92
L Q+ + +A+ L+ +M + + + L AC S+A A + G IHA V
Sbjct: 217 LAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALV 276
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---CGFHK 149
++ G D + NSL+ Y ++ A ++F S+ +V+W +I+G + C
Sbjct: 277 VRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAV 336
Query: 150 EAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
E + + +PN T ++L++C KA HS R +
Sbjct: 337 EVLSLMQEAGFEPNEVTYSNLLASCI--------KARDVHSARAM 373
Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC-GFHKEAIDMFCGIDVK-- 161
N+ L D+ +A + + + V+W T+IS L++ G EA++M+ + +
Sbjct: 78 NAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGL 137
Query: 162 -PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
P TL SVLSAC L + G+ H +++ + N ++NA+L
Sbjct: 138 LPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALL 183
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 5/195 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L+ H ++ QP+ NT+++ + P A + M + +F ALKA
Sbjct: 207 LHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKA 266
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C +G ++ V K G ++ ++N L+HFY + +A Q+F+ DVVTW
Sbjct: 267 CQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTW 326
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
TT+I G + +EA+++F + V+PN TL++V+SACS +G+ ++GK +H
Sbjct: 327 TTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEE 386
Query: 193 NLNENNIILDNAVLD 207
++ L NA+LD
Sbjct: 387 KNMRCSLSLHNALLD 401
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++ ML N T + ACS + G +H V + + + N+L
Sbjct: 340 EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNAL 399
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG--------------------- 146
L YV + A ++F+ + DV +WT++++G +KCG
Sbjct: 400 LDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWS 459
Query: 147 ----------FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLR 192
KE++ +F + V P +TLVSVLSAC L LG IH + +
Sbjct: 460 AMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVG 519
Query: 193 NLNENNIILDNAVLD 207
+ ++ L+NA++D
Sbjct: 520 KIIPLSVTLENAIVD 534
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL--H 99
+Q++ P+ ++ L+++M+ +T L AC G IH + + G +
Sbjct: 466 SQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFV-VGKIIPL 524
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---C 156
+ ++N+++ Y I +A ++F+++ ++++W T+I+G + G K+AI++F
Sbjct: 525 SVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMR 584
Query: 157 GIDVKPNANTLVSVLSACSSLG 178
+ +PN T VS+L+ACS G
Sbjct: 585 NMGFEPNNITFVSLLTACSHGG 606
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ QS+ + A+ L+ +M N +TF L++C+ Q G ++H HV+K G
Sbjct: 214 MISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVG 273
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
++F+ N+L+ Y + ++ ++F + + VTW T+I G + G +A+ ++
Sbjct: 274 LDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYK 333
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ V+ + T SVL AC+SL + +LG IH+ SL+ + + ++++ NA++D
Sbjct: 334 NMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALID 387
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
Q+++ L+ +M + NH+TF LKAC A G +H V+K + D+++ L
Sbjct: 124 QDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGL 183
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
L Y D ++F + DV+ W+ +IS ++ +EA+++F + V PN
Sbjct: 184 LDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQ 243
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T SVL +C+S+ + +LGK +H H L+ + N+ + NA++D
Sbjct: 244 FTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMD 286
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ QS A+ LY ML C + T++ L+AC+ A + G +IH+ +K
Sbjct: 313 NTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLK 372
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D+ + N+L+ Y I +A +F+ + D ++W +ISG S G EA+
Sbjct: 373 TIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKA 432
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + + PN T VS+LSACS+ G +G+
Sbjct: 433 FQMMQETECVPNKLTFVSILSACSNAGLLDIGQ 465
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL++ QS + L++++ N + FT LK + +HA + K
Sbjct: 11 TLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKL 70
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
GH + F+ +L+ Y + SA Q F+++ D+V+WT +++ ++ ++++ +F
Sbjct: 71 GHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLF 130
Query: 156 CG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ PN T VL AC L + +GK++H L+ E ++ + +LD
Sbjct: 131 AEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDL 186
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 97/184 (52%), Gaps = 4/184 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLE 87
P + N ++K+ +A+ +++ M+ + + YTF +KACS+ G+
Sbjct: 146 PSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVL 205
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH + G ++F+QNSLL Y+ + A Q+FN ++ VV+W T+ISG + G
Sbjct: 206 IHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGR 265
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+EA+ +F + V+P++ T+VS L +C L +LG +H +N + I + NA
Sbjct: 266 PEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNA 325
Query: 205 VLDF 208
++D
Sbjct: 326 LVDM 329
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ P+ A+ ++N M++ + T AL +C + G+++H +++
Sbjct: 254 NTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVH-KLVQ 312
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
HL + I ++N+L+ Y + A +F DV+TWT++I+G G K A+
Sbjct: 313 KNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALA 372
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + V PNA TL S+LSAC+SL K GK++HA +R ++++++ A++D
Sbjct: 373 LCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDM 430
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 5/164 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL L + + A+ L+ ML NH TF + A ++ ++ + +H+++++
Sbjct: 456 NALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVR 515
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTWTTIISGLSKCGFHKEAI 152
G + I + L+ Y + AH+IF+ + D++ W+ +I+G G + A+
Sbjct: 516 SGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAV 575
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+F + ++PN T SVL ACS G G + + + N
Sbjct: 576 LLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIEN 619
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)
Query: 59 NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD---IFIQNSLLHFYVTVK 115
C S HY T++L + +H H I G LH I + + L Y
Sbjct: 81 RCDSLLCHYAATRSLNKTKI---------LHGHTITSGLLHSPNFIHLPSHLAVSYAFCG 131
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVL 171
+ A ++F+ + P + W II GFH +A+ +F C P+ T V+
Sbjct: 132 CVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVI 191
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
ACS + +G IH +L + +N+ + N++L
Sbjct: 192 KACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLL 226
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ ++G +HA V++ D+ + +L+ Y + + Q+F
Sbjct: 385 NAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVF 444
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
V W ++SGL +EA+ +F + +V+ N T SV+ A + L K
Sbjct: 445 AKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLK 504
Query: 182 LGKAIHAHSLRN 193
+H++ +R+
Sbjct: 505 QVMNLHSYLVRS 516
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 11 PTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
PT SF + ++ P ++ N++++ LT + A+ LY++ +
Sbjct: 64 PTSSF--------SVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDT 115
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
YTF + AC+ + IH V+ G D++I N+L+ Y D+ A ++F
Sbjct: 116 YTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEE 175
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ DVV+W ++ISG + G+ EA+++ F + V P++ T+ SVL AC LGS + G
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235
Query: 184 KAIHAHSLRNLNENNIILDNAVL 206
IH + + ++I++N +L
Sbjct: 236 DIIHGLIEKIGIKKDVIVNNGLL 258
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + A+ +Y + N + YT + L+AC + ++G IH + K
Sbjct: 185 NSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEK 244
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N LL Y + +IF+ +V D V+W T+I G S+ G ++E+I +
Sbjct: 245 IGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKL 304
Query: 155 FCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + KP+ T+ S+L AC LG + GK +H + + + E + N +++
Sbjct: 305 FMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 359
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +Q + +I L+ +M+N + T T L+AC + G +H ++I
Sbjct: 286 NTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 344
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D N L++ Y ++ ++ ++F+ + D V+W ++I+ + G EA+ +
Sbjct: 345 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKL 404
Query: 155 F--CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F DVKP++ T V +LS + LG LGK +H + +NI++ N ++D
Sbjct: 405 FKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVD 459
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + Q+ + A+ L+ KM+ + T+ L + G E+H + K
Sbjct: 386 NSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK 444
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL---SKCGFHKEA 151
G +I + N+L+ Y ++ + ++F ++ D++TW TII+ C
Sbjct: 445 MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 504
Query: 152 IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
I V P+ T++S+L CS L +++ GK IH + E+++ + N +++
Sbjct: 505 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIE 560
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ S + + ++M + + T L CSL A ++G EIH + K
Sbjct: 486 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK 545
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N L+ Y + ++ Q+F + DVVTWT +IS G K+A+
Sbjct: 546 LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRA 605
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ + P+ V+++ ACS G
Sbjct: 606 FGEMEAAGIVPDHVAFVAIIFACSHSG 632
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
F+ +A + A + ++H+ +I G H + L+ Y +D S+ +F +
Sbjct: 16 FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR-LA 74
Query: 129 FP--DVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLG 183
P +V W +II L+ G EA+ ++ I ++P+ T SV++AC+ L ++
Sbjct: 75 SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 134
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
K+IH L +++ + NA++D
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALID 158
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 50/245 (20%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIK----------------------------------IPQP 31
L SL+ + QL QIHAQ+++ IP P
Sbjct: 44 LLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP 103
Query: 32 HIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
N++++ T + P+ AI Y M+ + +TF K+C + +G ++H
Sbjct: 104 TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVL---CEGKQLH 160
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
H K G D +IQN+L++ Y + SA ++F+ +V VV+W T+I ++
Sbjct: 161 CHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPH 220
Query: 150 EAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI----ILD 202
EAI +F ++ VKPN TLV+VL+AC+ SR L A H + ++E I +L
Sbjct: 221 EAIKLFRRMEIASVKPNEITLVNVLTACAR--SRDLETAKQVH--KYIDETGIGFHTVLT 276
Query: 203 NAVLD 207
+A++D
Sbjct: 277 SALMD 281
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N ++ + S + A+ L+N+M + T L AC+ A +
Sbjct: 298 KMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALEL 357
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++ K D+ + +L+ Y I SA ++F + DV+TWT +I GL+
Sbjct: 358 GKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAM 417
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
CG +A+++F + +VKP+A T V VL+ACS G
Sbjct: 418 CGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAG 454
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q P AI L+ +M N T L AC+ + + ++H ++ +
Sbjct: 208 TMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDET 267
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + ++L+ Y A +FN + ++ W +I+G + ++EA+ +F
Sbjct: 268 GIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLF 327
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ VK + T+ S+L AC+ LG+ +LGK +H + + E ++ L A++D
Sbjct: 328 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVD 382
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 7/189 (3%)
Query: 21 IHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
+ + I +P+ + N+LL+ L++S P+ I Y ++ + ++ +F LKA S
Sbjct: 69 LFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVS 128
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
A +G+E+H K L D F++ L+ Y I A +F+ + DVVTW T+I
Sbjct: 129 ALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIE 188
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
+ G EA +F + +V P+ L +++SAC G+ + +AI+ L EN
Sbjct: 189 RYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDF----LIEN 244
Query: 198 NIILDNAVL 206
++ +D +L
Sbjct: 245 DVRMDTHLL 253
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 3/141 (2%)
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
T L A +A +++ + + ++F+ +++ Y + A IF+
Sbjct: 250 THLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEM 309
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+V WTT+IS ++ +EA+ +F C +KP+ T++SV+SAC +LG+ K +
Sbjct: 310 KDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWV 369
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H ++ N E+ + +DNA+++
Sbjct: 370 HRYTHLNGLESVLPIDNALIN 390
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +S PQ A+ ++ +M + T + AC K +H +Y
Sbjct: 317 TMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVH----RY 372
Query: 96 GHLHDIF----IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
HL+ + I N+L++ Y + +A +F + +VV+W+++I+ + G ++
Sbjct: 373 THLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDS 432
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ +F + +V+PN T V VL CS G + GK I A
Sbjct: 433 LSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 472
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 7/162 (4%)
Query: 53 LYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111
+Y ML S N +T ALKAC+ A +G ++HA ++ G ++Q LL+ Y
Sbjct: 112 VYRLMLRAGSPRPNTFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLY 171
Query: 112 VTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANT 166
+ + A +F+ + PD +V W+ +I+G S+ G EA+ +F + V+P+ T
Sbjct: 172 AKCEQVALARTVFDGMA-PDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVT 230
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+V V+SAC+ G+ LGK +HA+ R ++ L A++D
Sbjct: 231 MVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDM 272
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ +M + T + AC+ A A G +HA++ + G D+ + +L+
Sbjct: 211 EALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALI 270
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
Y I A +F+++V D W+ +I G + G ++A+ +F + V+PN
Sbjct: 271 DMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNV 330
Query: 166 TLVSVLSACSSLG 178
T + VLSAC+ G
Sbjct: 331 TFIGVLSACAHSG 343
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I IP + N+L++ S++P ++ LY ++++ S N +TF LKAC+ AH
Sbjct: 48 ISIPNKFMYNSLIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMS 107
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ +H H K G I +QN L++ Y+ I A ++F+ + +V+W ++I G SK
Sbjct: 108 MIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKL 167
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G+ KE +F I + + TLV++L CS LG+ +H + + +++
Sbjct: 168 GWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVAR 227
Query: 203 NAVLD 207
NA++D
Sbjct: 228 NALID 232
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ N+++ Q + A+ L+++M + N T L AC
Sbjct: 280 QMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVM 339
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++ ++ + + NSL+ Y + A +FN + ++V+W II L+
Sbjct: 340 GKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALAL 399
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G+ EA+++F + V P+ T + +LSACS G
Sbjct: 400 HGYGVEAVELFRKMQAAGVWPDEITFMGLLSACSHSG 436
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ + L+ +M + + +T L CS G +H ++
Sbjct: 158 NSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQI 217
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF------- 147
G D+ +N+L+ Y + A ++F + +VV+WT++I+ +K G
Sbjct: 218 TGMKIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKS 277
Query: 148 ------------------------HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
+EA+D+F + V PN TL+SVLSAC +G
Sbjct: 278 FDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDL 337
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+GK IH + + ++ L N+++D
Sbjct: 338 VMGKKIHNYICGTSSMYSVTLCNSLID 364
>gi|296085625|emb|CBI29414.3| unnamed protein product [Vitis vinifera]
Length = 350
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 115/217 (52%), Gaps = 12/217 (5%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHA--QII-KIPQPHI--LNTLLKLLTQSSTPQNAIPLYN 55
+F +G + K S+ +L I + Q+ K PQ + N ++ ++ A+ LY+
Sbjct: 35 IFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYH 94
Query: 56 KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
+M + + T+T LKAC+ + + G E + G+ D+F+ ++L+ Y
Sbjct: 95 RMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCG 154
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 172
+ A ++F+ + D+V WTT+I+GL++ G +EA+D++ + V+ + ++ ++
Sbjct: 155 KMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQ 214
Query: 173 ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209
AC++LG K+G +IH + +R +II+D ++ +
Sbjct: 215 ACTTLGHSKMGLSIHGYMIR----KDIIMDVIIMQVL 247
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 39/225 (17%)
Query: 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
+ IH Q P I NTL++ + + TP +++ L+++ML+ N +TF K+C+
Sbjct: 82 FHSIHHQP---PNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCA 138
Query: 78 LAHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYV---------------TVKDIFS-- 119
+ A + ++HAH +K HLH + SL+H Y T++D S
Sbjct: 139 KSKATHEAKQLHAHALKLALHLHP-HVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFT 197
Query: 120 --------------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
A ++F+ + DVV+W +I+G + G +EA+ F + DV P
Sbjct: 198 ALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSP 257
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
N +T+VSVLSAC L S +LGK I + N+ L NA++D
Sbjct: 258 NQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVD 302
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++ N ++ QS + A+ + +M S N T L AC + +
Sbjct: 218 EIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLEL 277
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G I + V G ++ + N+L+ Y +I +A ++F+ + DV+ W T+I G
Sbjct: 278 GKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCH 337
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL----NEN 197
++EA+ +F + +V PN T ++VL AC+SLG+ LGK +HA+ +NL N N
Sbjct: 338 LSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVN 397
Query: 198 NIILDNAVL 206
N+ L +++
Sbjct: 398 NVSLWTSII 406
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ S + A+ L+ ML + N TF L AC+ A G +HA++ K
Sbjct: 329 NTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDK 388
Query: 95 ----YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
G+++++ + S++ Y + A Q+F S+ + +W +ISGL+ G +
Sbjct: 389 NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAER 448
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
A+ +F + +P+ T V VLSAC+ G +LG
Sbjct: 449 ALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELG 484
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVF--PDVVTWTTIISGL 142
+IH+ +IK G + +F Q+ L+ F +D+ A +F+S+ P++ W T+I
Sbjct: 43 QIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAH 102
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
S ++ +F + + PN++T S+ +C+ + K +HAH+L+
Sbjct: 103 SLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALK 155
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 77/262 (29%)
Query: 22 HAQII--KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY----NHYTFTQAL 73
HA ++ +IP+P + NTL++ ++ P++A+ LY +ML + TF L
Sbjct: 30 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVL 89
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT-------------------- 113
+AC+ A G+++HAHV+K G D F++N+L+ + +
Sbjct: 90 RACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAV 149
Query: 114 --------------------------VKDIFS----------------AHQIFNSVVFPD 131
VKD+ S A ++F+ V D
Sbjct: 150 AWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERD 209
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
VV+W +ISG +CG H A+++F + KP+ T++S+LSAC+ G +G+ +H+
Sbjct: 210 VVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS 269
Query: 189 HSLRNLNENN---IILDNAVLD 207
SL ++ N ++L NA++D
Sbjct: 270 -SLSDMFSRNGFPVVLGNALID 290
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N ++ + + +A+ L+ +M + T L AC+ +
Sbjct: 204 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 263
Query: 85 GLEIHAHVIKYGHLHDIF--------IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
G +H+ L D+F + N+L+ Y + SAH++F S+ DV TW
Sbjct: 264 GQRLHSS------LSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWN 317
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+I+ GL+ G E+IDMF + V+P+ T V+VL ACS G G+
Sbjct: 318 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGR 368
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-------DVKPNANTLVS 169
I A+ +F+ + PD + T+I G + ++A+ ++ + V+P+ T
Sbjct: 28 IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
VL AC+++G+ G +HAH ++ E++ + NA++
Sbjct: 88 VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALI 124
>gi|297791795|ref|XP_002863782.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309617|gb|EFH40041.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 590
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 103/187 (55%), Gaps = 5/187 (2%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ + N+++ + ++ + P + LY++M++ + TFT +KAC A +K
Sbjct: 67 QLPQRSVSVYNSMIVVYSRGNNPNEVLKLYDQMISERVKPDSSTFTITIKACLSGMALEK 126
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + + +++G+ +D+F+ +S+L+ Y+ + A +F + DV+ WTT+++G ++
Sbjct: 127 GEAVWSKAVEFGYKNDVFVCSSVLNLYMKCGKMNEAEVLFRKMTKRDVICWTTMVTGFAQ 186
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A++ + + + ++ +L A LG K+G+++H + +R N ++
Sbjct: 187 GGKSMKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDPKMGRSVHGYLIRTGLPMNTVV 246
Query: 202 DNAVLDF 208
+ +++D
Sbjct: 247 ETSLVDM 253
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 5/182 (2%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
++N+ K+ + ++ T++ Q A+ Y +M N + L+
Sbjct: 158 KMNEAEVLFRKMTKRDVICWTTMVTGFAQGGKSMKAVEFYREMQNEGFGRDRVVMLGLLQ 217
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
A + G +H ++I+ G + ++ SL+ Y V I A ++F+ ++F VT
Sbjct: 218 ASGDLGDPKMGRSVHGYLIRTGLPMNTVVETSLVDMYAKVGFIEVAFRMFSRMMFKTAVT 277
Query: 135 WTTIISGLSKCG---FHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
W ++ISG ++ G + EA+ + + + TLV VL ACS +GS G ++H + L
Sbjct: 278 WGSLISGFAQNGLANYAFEAVLEMQSLGFQLDLATLVGVLVACSQVGSLTTGISVHCYIL 337
Query: 192 RN 193
+
Sbjct: 338 KR 339
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS + G+ +H +++K H+ D +L+ Y + S+ IF V
Sbjct: 312 TLVGVLVACSQVGSLTTGISVHCYILKR-HVLDRITATALMDMYSKCGALSSSRVIFEHV 370
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D+V W T+IS +S MF + +++P+ T S+LSA S G + G+
Sbjct: 371 GRKDLVCWNTMISFVS----------MFLKMTETNIEPDHATFASLLSALSHSGLVEQGQ 420
>gi|326513504|dbj|BAJ87771.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524908|dbj|BAK04390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 38/211 (18%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK-GLEIHAHVI 93
NTL++ L SS+P +AI L+ M ++ + +TFT LK+CS + ++ ++HA I
Sbjct: 88 NTLMRGLAASSSPGDAIGLFAAMRRAGAAPDAFTFTFVLKSCSRCPSGRRLPSDLHAQAI 147
Query: 94 KYGHLHDI----FIQNSLLHFY---------------VTVKDIFS--------------- 119
++G L ++ + N+LLH Y + V+D+ S
Sbjct: 148 RHGCLGELSAHTHVHNALLHAYACRAAVDDACRVFEEIPVRDVVSFSGLLTAHLKANDLH 207
Query: 120 -AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLG 178
A +F+ + DVV+WT +IS +K +EA+ +F + ++P+ T+VS++SAC++LG
Sbjct: 208 AARLVFDQMPHRDVVSWTAMISAYAKACRPQEALALFDAMPMQPDEVTMVSIVSACTTLG 267
Query: 179 SRKLGKAIHAHSLRNLNENNII-LDNAVLDF 208
G+ + H + +L ++ L NA++D
Sbjct: 268 DLATGERVRRH-IDSLGFGWMVSLRNALMDM 297
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 17 QLNQIHAQIIKIPQ-PHI----LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
+ N +HA + Q PH ++ ++ PQ A+ L++ M P + T
Sbjct: 202 KANDLHAARLVFDQMPHRDVVSWTAMISAYAKACRPQEALALFDAM---PMQPDEVTMVS 258
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
+ AC+ G + H+ G + ++N+L+ Y + A +F+ +
Sbjct: 259 IVSACTTLGDLATGERVRRHIDSLGFGWMVSLRNALMDMYAKCGSLPEARALFDGMTVRS 318
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+ +W T+IS + G I +F G VKP+ TL+++L A + G + G+A+
Sbjct: 319 LASWNTLISAYASHGDLDNTIAVFYQMLAEGNTVKPDGVTLLALLIAYTHKGCVEEGRAM 378
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 89.4 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q + A+ + M N YTF L ACS + +G++IH+ + K
Sbjct: 121 NSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAK 180
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L D++I ++L+ Y ++ A Q+F+ + +VV+W ++I+ + G EA+ +
Sbjct: 181 SPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKV 240
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLD 207
F + V+P+ TL SV+SAC+SL + K+G+ +HA ++ + N+IIL NA +D
Sbjct: 241 FQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVD 297
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLY---NKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHA 90
N L+ TQ+ + A+ L+ + CP+ HYTF LKAC+ LA H G++ H
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPT---HYTFANILKACADLADLHL-GMQAHV 410
Query: 91 HVIKYG------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
HV+K+G DIF+ NSL+ YV + + +F ++ D V+W +I G ++
Sbjct: 411 HVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQ 470
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
G+ EA+++F + KP+ T++ VLSAC G + G+ + R+
Sbjct: 471 NGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDF 523
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 41/214 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q+ A+ ++ ML + T + AC+ A + G E+HA V+K
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS--------------------------V 127
L +DI + N+ + Y I A IF+S +
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARL 341
Query: 128 VFP-----DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F +VV+W +I+G ++ G ++EA+ +FC + V P T ++L AC+ L
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLAD 401
Query: 180 RKLGKAIHAHSLR------NLNENNIILDNAVLD 207
LG H H L+ + E++I + N+++D
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 34/154 (22%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA VIK G +++FIQN L+ Y + Q+F+ + +V TW ++++GL+K GF
Sbjct: 42 VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101
Query: 148 HKEAIDMFCGIDVKP----------------------------------NANTLVSVLSA 173
EA +F + + N T S LSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
CS L G IH+ ++ +++ + +A++D
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVD 195
>gi|449528126|ref|XP_004171057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 415
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
Query: 8 SLKPTLSFKQLNQI------HAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLN 59
+L +SF ++Q+ H +PQP+ + N L++ + S P NAI LY +M+
Sbjct: 22 TLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMR 81
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
N +T LK+C+ A+ + +H I+ G L +++ N+L++ Y +
Sbjct: 82 SGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQC 141
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A+Q+F+ + +V+W ++I G + G K A +F + +P+ TLV +LS CS
Sbjct: 142 AYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSK 201
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+GK++H + E ++IL NA+LD
Sbjct: 202 SCRLDIGKSVHHYVEITGIEFDLILRNALLD 232
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ + A L+ +M + +T L CS + G +H +V
Sbjct: 158 NSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEI 217
Query: 95 YGHLHDIFIQNSLLHF-YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D+ ++N+LL Y I A +IF+ + +V++W ++I + G KEA+
Sbjct: 218 TGIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALL 277
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F C + P+ TLVSVLSACS +G +G+ H R+ + L N+++D
Sbjct: 278 LFQQMCETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITVTLLNSLVD 334
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 22 HAQII--KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
HA+ I +IP+ +++ N+++ Q + A+ L+ +M + T L ACS
Sbjct: 243 HAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACS 302
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
G + H + ++ + + + NSL+ YV + + F ++V+W
Sbjct: 303 QIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWNI 362
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+I L+ G +A+ +F + + P+ T + +LSAC+ L +
Sbjct: 363 VIQALALHGHGLDALKLFNMMHTTGIWPDKFTFMGLLSACNHLST 407
>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
Length = 828
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 9/142 (6%)
Query: 48 QNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
+ A+ ++KML CP N YTF+ L A + +GL+IH V+K +D+ +Q
Sbjct: 420 EEALCWFHKMLRKQVCP---NSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQ 476
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---K 161
NSL+ Y + A++IF+ + P++V++ T+ISG S GF KEA+ +F ++ +
Sbjct: 477 NSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKE 536
Query: 162 PNANTLVSVLSACSSLGSRKLG 183
PN T +++LSAC +G LG
Sbjct: 537 PNGVTFLALLSACVHVGYVDLG 558
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DV 160
+S++ Y + I A +F+ + +V+TWT +I G K GF ++ +F + DV
Sbjct: 212 SSMVDGYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ N+NTL + AC + G IH R E ++ L N+++
Sbjct: 272 RVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLI 317
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T +AC +++G +IH + + D+F+ NSL+ Y + + A +F
Sbjct: 274 NSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVF 333
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ + D V+W ++I+GL + EA ++F
Sbjct: 334 GVMKYKDSVSWNSLITGLVQREQISEAYELF 364
Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++F + D +TWT +IS G+++EA+ F + V PN+ T SVLSA +SL
Sbjct: 393 ELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLA 452
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVL 206
G IH ++ N++ + N+++
Sbjct: 453 DLIEGLQIHGRVVKMNMANDLSVQNSLV 480
>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 609
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ +M++ N +T + A+KACS + G H VI +G + FI ++L +
Sbjct: 147 ALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAY 206
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNAN 165
Y ++ A ++F+ + PDV+ WT ++S SK ++EA+ +F G + P+ +
Sbjct: 207 LYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGS 266
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T +VL+AC +L K GK IH + N +N+++++++LD
Sbjct: 267 TFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDM 309
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
++P+P ++ +L +++ + A+ L+ M + TF L AC +
Sbjct: 223 EMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLK 282
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G EIH +I G ++ +++SLL Y + A Q+FN + + V+W+ ++ G
Sbjct: 283 QGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYC 342
Query: 144 KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ G H++AI++F ++ K + +VL AC+ L + +LGK IH +R N+I+++
Sbjct: 343 QNGEHEKAIEIFREMEEK-DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVES 401
Query: 204 AVLDF 208
A++D
Sbjct: 402 ALIDL 406
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL Q+ + AI ++ +M + Y F LKAC+ A + G EIH ++
Sbjct: 335 SALLGGYCQNGEHEKAIEIFREM----EEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVR 390
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ ++++L+ Y I SA ++++ + +++TW ++S L++ G +EA+
Sbjct: 391 RGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSF 450
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + +KP+ + +++L+AC G G+
Sbjct: 451 FNDMVKKGIKPDYISFIAILTACGHTGMVDEGR 483
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT 68
L P++S + ++I+++ + L +++L +ST + IP K+
Sbjct: 18 LTPSISSSAPTK-QSRILELCKLGQLTEAIRIL--NSTHSSEIPATPKL----------- 63
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSV 127
+ L+ C+ + G++ HAHV+K G D + NSLL Y + + ++F+
Sbjct: 64 YASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKL 182
D ++WT+++SG H +A+++F G+D N TL S + ACS LG +L
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDA--NEFTLSSAVKACSELGEVRL 181
Query: 183 GKAIHA 188
G+ H
Sbjct: 182 GRCFHG 187
>gi|357131661|ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial-like [Brachypodium distachyon]
Length = 924
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT+L ++ S + A ++ ++L+ S T + +CS + G +H+ V+
Sbjct: 445 NTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCSCPEDLRFGKAVHSFVL 504
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAI 152
KYG + + N+L+H Y+ D A + S++ D+++W T + G + G H+ A+
Sbjct: 505 KYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSDIISWNTAVVGCVQNGLHRGAL 564
Query: 153 DMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ F + + P++ TLVSVLSAC +L + LGK+IH+ +L+ L N+ + NA+L
Sbjct: 565 EAFQFMHSSLPLNPDSITLVSVLSACGTLKLQSLGKSIHSMALKRLLVFNLRVKNALL 622
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
P + + T L AC G IH+ +K + ++ ++N+LL Y D SA
Sbjct: 575 PLNPDSITLVSVLSACGTLKLQSLGKSIHSMALKRLLVFNLRVKNALLTMYFRFADTESA 634
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-VKPNANTLVSVLSACSSLGS 179
IF S+ ++ +W ++SG ++ + A+ + ++ PN VS++ AC+ L
Sbjct: 635 ELIFYSLGDRNLCSWNCMVSGFAQNNDGRRALQFYQKMEKFVPNEMCTVSIICACTQLRD 694
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK+IH H +++ +NN+ L +++D
Sbjct: 695 VRHGKSIHGHVVKSDLQNNVFLSASLVD 722
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++K L ++ A+ ++ +ML+ C + T + +C +G IH ++
Sbjct: 344 NVMIKGLMENEKAGEALAVFREMLSECQPDFA--TLVAVILSCGDQGLLCEGKAIHGYIT 401
Query: 94 KYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK-CGFHKEA 151
+ H + + NSLL Y+ D ++A+ +F ++ D+++W T++SG S+ +EA
Sbjct: 402 RKCLFHVESSLGNSLLGLYMKCDDAYTANLLFRTMPIRDLISWNTMLSGYSRDDSLREEA 461
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
MF + + T+++V+ +CS + GKA+H+ L+ + + + NA++
Sbjct: 462 QAMFRELLSEGLSCTMTTILAVIPSCSCPEDLRFGKAVHSFVLKYGFASGVSVVNALM 519
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q++ + A+ Y KM P N + AC+ + G IH HV+
Sbjct: 650 NCMVSGFAQNNDGRRALQFYQKMEKFVP---NEMCTVSIICACTQLRDVRHGKSIHGHVV 706
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K +++F+ SL+ Y + A ++F S + W ++IS G +I+
Sbjct: 707 KSDLQNNVFLSASLVDMYSKCGRLDIAVRVFESSTEKSIACWNSMISAFGFHGHGLRSIE 766
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+FC + +K +T +++LSACS G
Sbjct: 767 LFCSMIHSGMKATRSTFIALLSACSHAG 794
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTV-----KDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+H +K G + D ++ SLL Y D +A +F+ PDV+ W +I L
Sbjct: 85 LHCAALKSGAVLDPPVRTSLLAAYARCPSGGDHDARAALVLFHEAEDPDVILWNAVIGAL 144
Query: 143 SKCGFHKEAIDMF---CGIDVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ +A+ +F G+ + ++ T+V +LS S G LG A+HA +++ + +
Sbjct: 145 TRACRLGDAVALFRRMAGVRGEAFDSTTVVVMLSGASRAGELDLGMALHAAAVKRRLDTD 204
Query: 199 IILDNAVLD 207
+ L NA++D
Sbjct: 205 MNLWNALVD 213
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACSLAHA-HQKGLEIHAHVIKYGH--LHDIFIQNSLLHF 110
+ +M+ + T + + A S A G +H ++K G+ + NSL+ F
Sbjct: 259 FREMIRLAVQADEVTLSSVISASSRAEGLFSFGESVHGCIVKLGYEDTAPCSVANSLITF 318
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLV 168
Y A ++F + + V+W +I GL + EA+ +F + + +P+ TLV
Sbjct: 319 YFEFGFPEDAEKVFMRIFKKNHVSWNVMIKGLMENEKAGEALAVFREMLSECQPDFATLV 378
Query: 169 SVLSACSSLGSRKLGKAIHAHSLR 192
+V+ +C G GKAIH + R
Sbjct: 379 AVILSCGDQGLLCEGKAIHGYITR 402
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKGLE 87
P + N ++ LT++ +A+ L+ +M +++ T L S A G+
Sbjct: 132 PDVILWNAVIGALTRACRLGDAVALFRRMAGVRGEAFDSTTVVVMLSGASRAGELDLGMA 191
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG------ 141
+HA +K D+ + N+L+ Y + +F S+ D +W ++ G
Sbjct: 192 LHAAAVKRRLDTDMNLWNALVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTGGSTFNGL 251
Query: 142 --LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS-SLGSRKLGKAIHA 188
+S C F +E I + V+ + TL SV+SA S + G G+++H
Sbjct: 252 SEVSACYF-REMIRL----AVQADEVTLSSVISASSRAEGLFSFGESVHG 296
>gi|449460654|ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 471
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
Query: 8 SLKPTLSFKQLNQI------HAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLN 59
+L +SF ++Q+ H +PQP+ + N L++ + S P NAI LY +M+
Sbjct: 78 TLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMMR 137
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
N +T LK+C+ A+ + +H I+ G L +++ N+L++ Y +
Sbjct: 138 SGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNALINAYAVFGFVQC 197
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A+Q+F+ + +V+W ++I G + G K A +F + +P+ TLV +LS CS
Sbjct: 198 AYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSK 257
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+GK++H + E ++IL NA+LD
Sbjct: 258 SCRLDIGKSVHHYVEITGIEFDLILRNALLD 288
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ + A L+ +M + +T L CS + G +H +V
Sbjct: 214 NSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEI 273
Query: 95 YGHLHDIFIQNSLLHF-YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D+ ++N+LL Y I A +IF+ + +V++W ++I + G KEA+
Sbjct: 274 TGIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALL 333
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F C + P+ TLVSVLSACS +G +G+ H R+ + L N+++D
Sbjct: 334 LFQQMCETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITVTLLNSLVD 390
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 22 HAQII--KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
HA+ I +IP+ +++ N+++ Q + A+ L+ +M + T L ACS
Sbjct: 299 HAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACS 358
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
G + H + ++ + + + NSL+ YV + + F ++V+W
Sbjct: 359 QIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWNI 418
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+I L+ G +A+ +F + + P+ T + +LSAC+ L +
Sbjct: 419 VIQALALHGHGLDALKLFNMMHTTGIWPDKFTFMGLLSACNHLST 463
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 35/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I N +++ L+ S +P A+ Y M++ + N YTF K+C+
Sbjct: 86 KTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAH 145
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G ++HAHV+K G H+ F+ SL++ Y ++ +A +F+ D V++T +I+G +
Sbjct: 146 EGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYA 205
Query: 144 KCGFHKEAIDMFCGIDVK----------------------------------PNANTLVS 169
GF EA ++F I V+ PN +T++S
Sbjct: 206 SKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLS 265
Query: 170 VLSACSSLGSR-KLGKAIHAHSLRNLNENNIILDNAVLD 207
VLSAC+ GS +LG + + +NI L N ++D
Sbjct: 266 VLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLID 304
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH-QKGLEIHAHVI 93
N ++ QS + A+ + +M + N T L AC+ + + Q G + + +
Sbjct: 229 NAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIE 288
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G +I + N L+ YV D+ A +F + +VV+W +I G + +KEA+
Sbjct: 289 DRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALG 348
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN--ENNIILDNAVLD 207
+F + ++ PN T +S+L AC++LG+ LGK +HA+ +N+ +N + L +++D
Sbjct: 349 LFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLID 407
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ T S + A+ L+ +M+ N TF L AC+ A G +HA+V K
Sbjct: 331 NVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDK 390
Query: 95 --YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ + + SL+ Y D+ A +IF+ + + TW +ISG + G A+
Sbjct: 391 NMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTAL 450
Query: 153 DMFCGIDVK---PNANTLVSVLSACSSLGSRKLGK 184
+F + + P+ T V VL+AC G LG+
Sbjct: 451 GLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGR 485
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IH+ +IK G + F + L+ F D+ A +F ++ P+ V W +I GLS
Sbjct: 46 QIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSS 105
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
A++ + + +PN T S+ +C+ + GK +HAH L+ E+N +
Sbjct: 106 SESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFV 165
Query: 202 DNAVLD 207
++++
Sbjct: 166 HTSLIN 171
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 101/196 (51%), Gaps = 36/196 (18%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLE 87
P ++ NT+ ++ S TP +A+ L+ ML + YTF LKACS LAH KG E
Sbjct: 51 PSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHL-PKGQE 109
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI--------- 138
+H +K+G +F++NSL+H Y + + SA ++F+ + + D+ +WTT+
Sbjct: 110 LHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCS 169
Query: 139 ----------------------ISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 173
I+ + +EA+D+F + ++P+ + ++SVL A
Sbjct: 170 VKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCA 229
Query: 174 CSSLGSRKLGKAIHAH 189
C++LG+ +G+ ++++
Sbjct: 230 CANLGALDVGRWVYSY 245
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ ++ + + + A+ L+ ++ + + L AC+ A
Sbjct: 179 EMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDV 238
Query: 85 GLEIHAHVIK-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G ++++V + G D I +L+ + I A +F V WT ++SGL+
Sbjct: 239 GRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLA 298
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G ++ I+ F + VKPN T V++LS CS G
Sbjct: 299 MHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSG 336
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 11/178 (6%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
F+Q+++ P N +++ T +P AI L+ +M + +TF LK
Sbjct: 81 FRQIDE--------PDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
CS A +G +IHA ++K G F++N+L+H Y ++ A ++F+ + +V T
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192
Query: 135 WTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
W ++ +G +K G +E + +F +D++ + TLVSVL+AC L +LG+ I+ +
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRY 250
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++ T+S + + L+++ML ++ T L AC + G I+ +V +
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEE 253
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + SL+ Y + +A ++F+ + DVV W+ +ISG S+ +EA+D+
Sbjct: 254 KGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDL 313
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + ++ PN T+VS+LS+C+ LG+ + GK +H + + + L A++DF
Sbjct: 314 FHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDF 370
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+S + A+ L+++M N T L +C++ A + G +H + K +
Sbjct: 302 SQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTV 361
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ +L+ FY + S+ ++F + +V++WT +I GL+ G K+A++ F +
Sbjct: 362 TLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEK 421
Query: 159 DVKPNANTLVSVLSACSSLG 178
+V+PN T + VLSACS G
Sbjct: 422 NVEPNDVTFIGVLSACSHAG 441
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 34/214 (15%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P NT+++ + S P ++ ++ KML + ++ T+ +KA + + G+ +
Sbjct: 77 PTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSV 136
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-- 146
HAH+IK GH D FIQNSL+H Y + A ++F+S+ +VV+W +++ G +KCG
Sbjct: 137 HAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEM 196
Query: 147 -FHKEAIDMFCGIDVK-----------------------------PNAN--TLVSVLSAC 174
++A + DV+ P AN T+VSV AC
Sbjct: 197 VMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCAC 256
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +G+ + G+ I+ + + N ++L +++D
Sbjct: 257 AHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDM 290
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
++L+ ++ A+ ++ KM + N T AC+ A +KG I+ +++
Sbjct: 215 SSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVD 274
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAI 152
G + +Q SL+ Y I A IF V DV+ W +I GL+ G +E++
Sbjct: 275 NGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESL 334
Query: 153 DMFCG---IDVKPNANTLVSVLSACSSLG 178
+F + + P+ T + +L+AC+ G
Sbjct: 335 KLFKEMQIVGICPDEVTYLCLLAACAHGG 363
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
++HA VI G D + +L F DI ++++F+ + P + +W TII G S
Sbjct: 32 QLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSN 91
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+++ +F + V P+ T ++ A + L +++ G ++HAH ++ +E++ +
Sbjct: 92 SKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFI 151
Query: 202 DNAVL 206
N+++
Sbjct: 152 QNSLI 156
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 45/226 (19%)
Query: 28 IPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNC---PSSY------NHYTFTQALKAC 76
+P P H+ N ++K Q+ ++A+ +Y +ML C PSS + +T+ LKAC
Sbjct: 68 VPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKAC 127
Query: 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--------- 127
A Q G ++HAHV + G +QNSL+ Y D+ A ++F+ +
Sbjct: 128 GGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWN 187
Query: 128 --------------------VFPD--VVTWTTIISGLSKCGFHKEAIDMFCGIDV---KP 162
PD VV+WT ++SG + G A+++F + + +P
Sbjct: 188 TLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEP 247
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++V+VL AC+ LG+ +LG+ I+A+ ++ I + NA+++
Sbjct: 248 DDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEM 293
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 4 NGLKSLKPTLSFKQLNQIHAQIIKIPQPHIL------------NTLLKLLTQSSTPQNAI 51
+G++ K +S+ L HA++ ++ + L L+ T A+
Sbjct: 176 DGMRE-KDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAV 234
Query: 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111
++ +M + + L AC+ A + G I+A+ K+G L I+I N+L+ Y
Sbjct: 235 EVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMY 294
Query: 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTL 167
I A Q+F+ + DV++W+T I GL+ G +EA+ +F +D V PN T
Sbjct: 295 AKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITF 354
Query: 168 VSVLSACSSLG 178
V +LSACS G
Sbjct: 355 VGLLSACSHAG 365
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 37/223 (16%)
Query: 20 QIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP--------SSYNH-- 66
Q+H I++ P +I NTLLKL + A L++K N S Y H
Sbjct: 49 QVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRG 108
Query: 67 ---------------------YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
+TF L ACS G EIH V++ G +D + N
Sbjct: 109 LAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGN 168
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
+L+ Y + A ++F+++ D V+WTT+ ++ G+ +E++ + + V+P
Sbjct: 169 ALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRP 228
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ T ++VLSAC SL + + GK IHAH + + +++ + A+
Sbjct: 229 SRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTAL 271
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113
+ +ML N T+ LKACS A + G EIHA V+K G L D+ + N+L+ Y
Sbjct: 420 FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFK 479
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSV 170
+ A ++F + DVVTW T+I GL + G EA+ + + ++PNA T V+V
Sbjct: 480 CGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNV 539
Query: 171 LSAC 174
LSAC
Sbjct: 540 LSAC 543
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ Y + + L++C A G ++H H+++ G +++I N+LL Y + A Q+F
Sbjct: 27 DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ VV+W +ISG + G +EA ++F + ++P+ T VS+LSACSS
Sbjct: 87 DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
G+ IH + N+ + NA++
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALI 171
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL +S + ++ Y+ ML + T+ L AC A +KG +IHAH+++
Sbjct: 200 TLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVES 259
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D+ + +L Y+ A ++F + + DV+ W T+I G G +EA F
Sbjct: 260 EYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTF 319
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ V P+ T +VLSAC+ G GK IHA + ++ +++ NA+++
Sbjct: 320 HRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALIN 374
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT+++ S + A +++ML + + T+T L AC+ +G EIHA K
Sbjct: 300 NTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAK 359
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+ N+L++ Y + A Q+F+ + DVV+WTT++ + C E+
Sbjct: 360 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTT 419
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + VK N T + VL ACS+ + K GK IHA ++ ++ + NA++
Sbjct: 420 FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALM 474
>gi|22331393|ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g28660
gi|9294280|dbj|BAB02182.1| unnamed protein product [Arabidopsis thaliana]
gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis thaliana]
gi|332643950|gb|AEE77471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN------CPSSYN-HYTFTQALKACSL 78
I+IP + +T++++ ++SS P + + M+ PS H+ LKAC
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFF 132
Query: 79 AHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ G +IH V+K G L D +Q +L YV K +F A ++F+ + PDVV W
Sbjct: 133 S----VGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDV 188
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRN 193
+++G +CG E +++F + ++P+ ++ + L+AC+ +G+ GK IH +
Sbjct: 189 LMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKR 248
Query: 194 LNENNIILDNAVLD 207
E+++ + A++D
Sbjct: 249 WIESDVFVGTALVD 262
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 7/167 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IPQP ++ + L+ + + ++ +ML + ++ T AL AC+ A +
Sbjct: 177 EIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQ 236
Query: 85 GLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IH V K + D+F+ +L+ Y I +A ++F + +V +W +I G +
Sbjct: 237 GKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYA 296
Query: 144 KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAI 186
G+ K+A I+ +KP++ L+ VL+AC+ G + G+ +
Sbjct: 297 AYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTM 343
>gi|115444423|ref|NP_001045991.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|49388051|dbj|BAD25165.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388408|dbj|BAD25541.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535522|dbj|BAF07905.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|125538213|gb|EAY84608.1| hypothetical protein OsI_05976 [Oryza sativa Indica Group]
gi|125580926|gb|EAZ21857.1| hypothetical protein OsJ_05503 [Oryza sativa Japonica Group]
gi|215737275|dbj|BAG96204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 98/184 (53%), Gaps = 14/184 (7%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL--EI 88
P N+L++ +S P+ A+ L+++M + + + YT + ACS + + L +
Sbjct: 90 PFSFNSLIR----ASPPRLALQLFDQMRHRGVTTDRYTLPFLIHACS---SGDRPLCESL 142
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H ++ G+ +F Q +L++ Y + +A ++F+ + DVV WT ++SG G
Sbjct: 143 HGQSLRLGYSSVLFTQTALMNAYFACRFEVAARRVFDEMQAKDVVAWTGMVSGYVDSGMF 202
Query: 149 KEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+++F C V+PN T+VSV SAC+ LGS + K +HA+ + E +I+ N
Sbjct: 203 LRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSLEYAKGLHAYVEKVGLEGELIVKN 262
Query: 204 AVLD 207
+++D
Sbjct: 263 SLID 266
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 49 NAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
+ ++ +M +C + N T AC+ + + +HA+V K G ++ ++NS
Sbjct: 204 RGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSLEYAKGLHAYVEKVGLEGELIVKNS 263
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
L+ Y I A +F + D+ +WT +ISGL+ G KEA+ +F + V P+
Sbjct: 264 LIDMYGKCGSIELARGLFGLMPQKDLHSWTAMISGLASHGHGKEAVALFFSMKEAGVLPD 323
Query: 164 ANTLVSVLSACSSLG 178
+ T V VLSACS G
Sbjct: 324 STTFVVVLSACSHAG 338
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ +Q++ P++A+ L+ +ML NH+T + LKA H G ++HA +KYG
Sbjct: 160 LIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYG 219
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ +++ ++L+ Y + +A F+ + V+W +ISG ++ G + A+ +
Sbjct: 220 YQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLW 279
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + +P T SVLSAC+S+G+ + GK +HAH +++ + + N +LD
Sbjct: 280 KMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLD 333
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + ++A+ L KM H+T++ L AC+ A ++G +HAH+IK
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIK 318
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G FI N+LL Y I A ++F+ +V PDVV+W T+++G ++ G KE +D
Sbjct: 319 SGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F I ++PN + + VL+ACS G
Sbjct: 379 FEQMLRIGIEPNEISFLCVLTACSHSG 405
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQ 122
YN Y+ + LK C+ ++G +HAH++ L + + +QN +++ Y + A +
Sbjct: 87 YNLYS--KLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGS 179
+F+ + D+VTWT +I+G S+ ++A+ +F + +PN TL S+L A S
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
G +HA L+ ++++ + +A++D
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVD 232
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 13/171 (7%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKM--LNCPSSYNHYTFTQALKACSLAHAH----QKGL 86
+ N + + L +S ++ + LY +M + PS N +T+T LKAC ++ +KG
Sbjct: 142 VWNAIFRALAMASRGEDLLVLYGQMNWIGIPS--NRFTYTYVLKACVVSELSICPLRKGK 199
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
EIHAH++++G+ + + +LL Y + A +F ++ ++V+W+ +I+ +K
Sbjct: 200 EIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNE 259
Query: 147 FHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+A+++F D PN T+VSVL AC+SL + + GK +HA+ LR
Sbjct: 260 MPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLR 310
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHAHQ 83
+P +I++ ++ ++ P A+ L+ M+ C + N T L+AC+ A +
Sbjct: 240 MPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALE 299
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +HA+V++ G + + N+L+ Y +I + ++F+ + DV++W ++IS
Sbjct: 300 HGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYG 359
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G K+AI +F + V P+ T ++VL ACS G
Sbjct: 360 MHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAG 397
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 56 KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
++L C + TF + +C ++ G+++H ++ G D ++ L++ Y +
Sbjct: 64 QLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLG 123
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLS 172
+ A ++F+ + W I L+ ++ + ++ I + N T VL
Sbjct: 124 SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLK 183
Query: 173 ACS----SLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
AC S+ + GK IHAH LR+ E ++ + +LD
Sbjct: 184 ACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLD 222
>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15130
gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H+LN LK ++ L+++M N +TF+ LKAC L +A +KGL+IH
Sbjct: 82 HVLNGDLK---------GSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 132
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+K G + + NSL+ Y I A ++F +V +++W +I+G G+ +A
Sbjct: 133 CLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKA 192
Query: 152 IDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+D F I +P+ TL S+L ACSS G GK IH +R+
Sbjct: 193 LDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 239
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ C+ +G ++H +++K G ++ N L+ Y ++ A+++F+S+ +V
Sbjct: 13 LRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNV 72
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+W+ ++SG G K ++ +F + + PN T + L AC L + + G IH
Sbjct: 73 VSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 132
Query: 190 SLRNLNENNIILDNAVLD 207
L+ E + + N+++D
Sbjct: 133 CLKIGFEMMVEVGNSLVD 150
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ ++ S + + + + + ++G ++ A +K + + NS++
Sbjct: 297 AMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVD 356
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y+ + A + F + DV++WT +I+G K G K+++ +F + +++P+
Sbjct: 357 MYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVC 416
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSL 191
++VLSACS G K G+ + + L
Sbjct: 417 YLAVLSACSHSGMIKEGEELFSKLL 441
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAH 121
+ +T T LKACS G +IH +++ G H I SL+ YV +FSA
Sbjct: 209 DEFTLTSLLKACSSTGMIYAGKQIHGFLVRSG-FHCPSSATITGSLVDLYVKCGYLFSAR 267
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
+ F+ + +++W+++I G ++ G EA+ +F ++ + ++ L S++ +
Sbjct: 268 KAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFA 327
Query: 179 SRKLGKAIHAHSLR 192
+ GK + A +++
Sbjct: 328 LLRQGKQMQALAVK 341
>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
Length = 1161
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H+LN LK ++ L+++M N +TF+ LKAC L +A +KGL+IH
Sbjct: 453 HVLNGDLK---------GSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 503
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+K G + + NSL+ Y I A ++F +V +++W +I+G G+ +A
Sbjct: 504 CLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKA 563
Query: 152 IDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+D F I +P+ TL S+L ACSS G GK IH +R+
Sbjct: 564 LDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 610
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ ++ S + + + + + ++G ++ A +K + + NS++
Sbjct: 668 AMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVD 727
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y+ + A + F + DV++WT +I+G K G K+++ +F + +++P+
Sbjct: 728 MYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVC 787
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSL 191
++VLSACS G K G+ + + L
Sbjct: 788 YLAVLSACSHSGMIKEGEELFSKLL 812
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAH 121
+ +T T LKACS G +IH +++ G H I SL+ YV +FSA
Sbjct: 580 DEFTLTSLLKACSSTGMIYAGKQIHGFLVRSG-FHCPSSATITGSLVDLYVKCGYLFSAR 638
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
+ F+ + +++W+++I G ++ G EA+ +F ++ + ++ L S++ +
Sbjct: 639 KAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFA 698
Query: 179 SRKLGKAIHAHSLR 192
+ GK + A +++
Sbjct: 699 LLRQGKQMQALAVK 712
Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
++ N L+ Y ++ A+++F+S+ +VV+W+ ++SG G K ++ +F +
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ PN T + L AC L + + G IH L+ E + + N+++D
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVD 521
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 8/188 (4%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+I P NT+++ SS + L++KM S +H+TF LKAC+ Q
Sbjct: 46 DLIAFPDTFAFNTIIRAHADSSPSFSLS-LFSKMAMAGVSPDHFTFPFVLKACARL---Q 101
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
GL++H+ + K G D+++QN L+HFY + A ++F + D+V+W+++I+ +
Sbjct: 102 TGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFA 161
Query: 144 KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
K GF EA+ +F + VKP+ ++SV+SA S LG +LGK I RN E +
Sbjct: 162 KNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTV 221
Query: 200 ILDNAVLD 207
L A++D
Sbjct: 222 SLGTALVD 229
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQ 83
++P+ +++ +++ ++ A+ L+ +M L + + A S+ +
Sbjct: 144 EMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLE 203
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G I + + G + + +L+ + I + ++F+ + +V+TWT +I+GL+
Sbjct: 204 LGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLA 263
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EA+ MF + +P+ T VL ACS G
Sbjct: 264 VHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGG 301
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY------NHYTFTQALKACSLAHAH 82
P NT+++ + S+ P A L+ M N + +H+T+ LKACS +
Sbjct: 58 PNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHA 117
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+ G +IH V K G D +I N+L+H Y + A+++F+ + DVV+WT+II G
Sbjct: 118 RFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGF 177
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
EAI +F + ++PN T+ SVL AC+ G+ G+ IH+
Sbjct: 178 VDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHS 226
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYN 65
S +P L++K + K+P +++ +++ + P AI L+ M+ N
Sbjct: 149 SGEPNLAYKVFD-------KMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPN 201
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
T L+AC+ A G IH+ V + + + +L+ Y I A ++F+
Sbjct: 202 EVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFD 261
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ DV WT II+GL+ G +AI+ F + DVK + + +VLSA + G
Sbjct: 262 ETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAG 317
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ LT + A+ LY++ + YTF + AC+ + IH V+
Sbjct: 143 NSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLX 202
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D++I N+L+ Y D+ A ++F + DVV+W ++ISG + G+ EA+++
Sbjct: 203 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 262
Query: 155 ---FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + V P++ T+ SVL AC LGS + G IH + + ++I++N +L
Sbjct: 263 YYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 317
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + A+ +Y + N + YT + L+AC + ++G IH + K
Sbjct: 244 NSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEK 303
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N LL Y + +IF+ +V D V+W T+I G S+ G ++E+I +
Sbjct: 304 IGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKL 363
Query: 155 FCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + KP+ T+ S+L AC LG + GK +H + + + E + N +++
Sbjct: 364 FMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 418
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +Q + +I L+ +M+N + T T L+AC + G +H ++I
Sbjct: 345 NTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 403
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D N L++ Y ++ ++ ++F+ + D V+W ++I+ + G EA+ +
Sbjct: 404 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKL 463
Query: 155 F--CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F DVKP++ T V +LS + LG LGK +H + +NI++ N ++D
Sbjct: 464 FKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVD 518
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + Q+ + A+ L+ KM+ + T+ L + G E+H + K
Sbjct: 445 NSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK 503
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL---SKCGFHKEA 151
G +I + N+L+ Y ++ + ++F ++ D++TW TII+ C
Sbjct: 504 MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 563
Query: 152 IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
I V P+ T++S+L CS L +++ GK IH + E+++ + N +++
Sbjct: 564 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIE 619
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ S + + ++M + + T L CSL A ++G EIH + K
Sbjct: 545 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK 604
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N L+ Y + ++ Q+F + DVVTWT +IS G K+A+
Sbjct: 605 LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRA 664
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ + P+ V+++ ACS G
Sbjct: 665 FGEMEAAGIVPDHVAFVAIIFACSHSG 691
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
F+ +A + A + ++H+ +I G H + L+ Y +D S+ +F +
Sbjct: 75 FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR-LA 133
Query: 129 FP--DVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLG 183
P +V W +II L+ G EA+ ++ I ++P+ T SV++AC+ L ++
Sbjct: 134 SPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 193
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
K+IH L +++ + NA++D
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALID 217
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ IK P + + L+ L Q + +I L++ M + N YT L A + Q
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IHA V KYG D+ + N+L+ Y+ + +++ S+V D+++W +SGL
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492
Query: 144 KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNI 199
CG + + +F + + PN T +S+L +CS L G+ +HAH ++N L++NN
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552
Query: 200 I 200
+
Sbjct: 553 V 553
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 5/188 (2%)
Query: 25 IIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+ K+P +++ L++ L ++I L+ +M N N +T LKACSL A
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G ++HA K G L D+F+ ++L+ Y +I A ++F + + VTW +++G
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289
Query: 143 SKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
++ G + +FC +DVK N TL +VL C++ + K G+ IH+ ++ E N
Sbjct: 290 AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNE 349
Query: 200 ILDNAVLD 207
+ ++D
Sbjct: 350 FIGCGLVD 357
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
Query: 26 IKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
I +P+ + N LL Q + L+ M+ N +T T LK C+ + +
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IH+ +IK G+ + FI L+ Y A +F ++ PD+V W+ +I+ L
Sbjct: 332 QGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLD 391
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G +E+I +F + D PN T+ S+LSA ++ G+ + G++IHA + E ++
Sbjct: 392 QQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVA 451
Query: 201 LDNAVL 206
+ NA++
Sbjct: 452 VSNALV 457
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q++ + A+ + +M N +T L CS + + G ++H+ V K GH+ D+
Sbjct: 593 AQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDM 652
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ ++L+ Y + A +F +++ D + W TII G ++ G +A+ F +
Sbjct: 653 FVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDE 712
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGK 184
+ P+ T +LSACS G + GK
Sbjct: 713 GISPDGVTFTGILSACSHQGLVEEGK 738
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF L +CS G ++HAH+IK + F+ +L+ Y + A F
Sbjct: 515 NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAF 574
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
N + D+ TWT II+ ++ ++A++ F + VKPN TL LS CSSL S +
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +H+ ++ + +++ + +A++D
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVD 660
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
++ L+ C+ + IH ++K D + SL++ Y + A + +
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKA 185
DVV+WT +I GL GF ++I +F + + PN TL + L ACS + LGK
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234
Query: 186 IHAHSLR 192
+HA + +
Sbjct: 235 MHAQAFK 241
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 49/223 (21%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC--PSSYN---- 65
+L FKQ +K P ++ N +++ T + AI Y +ML P S N
Sbjct: 66 SLLFKQ--------VKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFP 117
Query: 66 -HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+TF +K+CS + G ++HAH+ K+G +I ++N+L+ Y + AH++F
Sbjct: 118 DRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVF 177
Query: 125 NSVVFPD-------------------------------VVTWTTIISGLSKCGFHKEAID 153
+ +V D +V+WT +ISG ++ G + +A+
Sbjct: 178 DGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALY 237
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+F + V+P+ +++SVL AC+ LG+ ++GK IH + RN
Sbjct: 238 VFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRN 280
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T+ + +A+ ++ +M + + L AC+ A + G IH + + G L
Sbjct: 227 TRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKT 286
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
I N+L+ Y I A+Q+F+ + DV++W+T+I GL+ G +EAI++F +
Sbjct: 287 SICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKA 346
Query: 159 DVKPNANTLVSVLSACSSLG 178
++PN T + +LSAC+ G
Sbjct: 347 KIEPNGITFLGLLSACAHAG 366
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS---- 143
IHAHVIKY F+ ++ +D+ A +F V P+ + +I +
Sbjct: 33 IHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKV 92
Query: 144 ---KCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
F+KE + D + P+ T V+ +CS L LGK +HAH + ++
Sbjct: 93 YALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKS 152
Query: 198 NIILDNAVLDF 208
NI ++NA++D
Sbjct: 153 NITMENALIDM 163
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
+ + P+ A+ L+ +M + T T + +C+ ++G EIH +++ G
Sbjct: 85 IFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 144
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D F+ ++L+ Y + A ++F + +VV+W ++I+G S G K I++F +D
Sbjct: 145 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 204
Query: 160 ---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++P TL S+L ACS + +LGK IH + +RN E +I ++++++D
Sbjct: 205 EEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 256
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + ++ I L+ +M T + L ACS + Q G IH ++I+
Sbjct: 181 NSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIR 240
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF+ +SL+ Y +I SA +F ++ +VV+W +ISG K G + EA+ +
Sbjct: 241 NRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVI 300
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
F + VKP+A T SVL ACS L + GK IH + + E N +L
Sbjct: 301 FTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVL 350
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-D 131
LK C + ++G IH ++ G ++I + SL++ Y + SA +F ++ P D
Sbjct: 10 LKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLD 69
Query: 132 VVTWTTIISGLSK-----CGFHKE-AIDMFCGIDV---KPNANTLVSVLSACSSLGSRKL 182
+ W +++ +K G E A+++F + V KP++ TL +V+S+C+ L +
Sbjct: 70 ITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLER 129
Query: 183 GKAIHAHSLRN 193
GK IH +R+
Sbjct: 130 GKEIHMELVRS 140
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 11 PTLSFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT 68
P+ S L+ + IP P N LL+ ++ TP+N + LY + + ++
Sbjct: 58 PSPSPSALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFS 117
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
F LKA S A GLEIH K+G H D FIQ++L+ Y I A +F+ +
Sbjct: 118 FPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKM 177
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
DVVTW +I G S+ + + ++ + +P+A L +VLSAC+ G+ GK
Sbjct: 178 SHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGK 237
Query: 185 AIH 187
AIH
Sbjct: 238 AIH 240
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+S P A+ L+N+M + T + AC+ A + IH + K G +
Sbjct: 326 ESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLP 385
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
I N+L+ Y ++ A ++F ++ +V++W+++I+ + G AI +F + +
Sbjct: 386 INNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQN 445
Query: 160 VKPNANTLVSVLSACSSLG 178
++PN T + VL ACS G
Sbjct: 446 IEPNGVTFIGVLYACSHAG 464
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q++ + + LY +M + + L AC+ A G IH +
Sbjct: 186 NIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKD 245
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQ-------------------------------I 123
G IQ SL++ Y + A + I
Sbjct: 246 NGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFI 305
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
F+ +V D+V W+ +ISG ++ EA+ +F + + P+ T++SV+SAC+++G+
Sbjct: 306 FDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGAL 365
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
K IH ++ +N + ++NA++D
Sbjct: 366 VQAKWIHTYADKNGFGRTLPINNALID 392
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 42/217 (19%)
Query: 14 SFKQLNQIHAQIIKIPQP-------------------------HIL------------NT 36
S Q Q+HAQI+K P P H++ NT
Sbjct: 5 SLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNT 64
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++ +Q+ P A+ L+ ML P+S + +T+ LK+C+ + G ++H + K
Sbjct: 65 MIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYK 124
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D ++ N L+H Y + A+++F + DVV+WT++I G EAI +
Sbjct: 125 SGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRL 184
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + V+PN T+VSVL AC+ G+ +G+ +
Sbjct: 185 FEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQG 221
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
AI L+ +M+ N T L+AC+ A A G + + + + ++ +L+
Sbjct: 180 EAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALI 239
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y I SA ++F+ +V DV WT +ISGL+ G +EA+ +F ++ ++P+
Sbjct: 240 DMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDER 299
Query: 166 TLVSVLSACSSLG 178
T+ +VLSAC + G
Sbjct: 300 TMTAVLSACRNAG 312
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ IK P + + L+ L Q + +I L++ M + N YT L A + Q
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IHA V KYG D+ + N+L+ Y+ + +++ S+V D+++W +SGL
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492
Query: 144 KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNI 199
CG + + +F + + PN T +S+L +CS L G+ +HAH ++N L++NN
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552
Query: 200 I 200
+
Sbjct: 553 V 553
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 5/188 (2%)
Query: 25 IIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+ K+P +++ L++ L ++I L+ +M N N +T LKACSL A
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G ++HA K G L D+F+ ++L+ Y +I A ++F + + VTW +++G
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289
Query: 143 SKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
++ G + +FC +DVK N TL +VL C++ + K G+ IH+ ++ E N
Sbjct: 290 AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNE 349
Query: 200 ILDNAVLD 207
+ ++D
Sbjct: 350 FIGCGLVD 357
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
Query: 26 IKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
I +P+ + N LL Q + L+ M+ N +T T LK C+ + +
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IH+ +IK G+ + FI L+ Y A +F ++ PD+V W+ +I+ L
Sbjct: 332 QGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLD 391
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G +E+I +F + D PN T+ S+LSA ++ G+ + G++IHA + E ++
Sbjct: 392 QQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVA 451
Query: 201 LDNAVL 206
+ NA++
Sbjct: 452 VSNALV 457
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q++ + A+ + +M N +T L CS + + G ++H+ V K GH+ D+
Sbjct: 593 AQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDM 652
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ ++L+ Y + A +F +++ D + W TII G ++ G +A+ F +
Sbjct: 653 FVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDE 712
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGK 184
+ P+ T +LSACS G + GK
Sbjct: 713 GISPDGVTFTGILSACSHQGLVEEGK 738
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF L +CS G ++HAH+IK + F+ +L+ Y + A F
Sbjct: 515 NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAF 574
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
N + D+ TWT II+ ++ ++A++ F + VKPN TL LS CSSL S +
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +H+ ++ + +++ + +A++D
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVD 660
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
++ L+ C+ + IH ++K D + SL++ Y + A + +
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKA 185
DVV+WT +I GL GF ++I +F + + PN TL + L ACS + LGK
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234
Query: 186 IHAHSLR 192
+HA + +
Sbjct: 235 MHAQAFK 241
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +L+ Q + A+ LY +M + + + + L AC+ A+++G ++H H+
Sbjct: 381 LFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHI 440
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+G + DIF NSL++ Y I A F+ + +V+W+ +I GL++ G+ KEA+
Sbjct: 441 LKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEAL 500
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLG 178
+F + V PN TLVSVL AC+ G
Sbjct: 501 QLFKQMLKVGVPPNHITLVSVLCACNHAG 529
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L S A+ L++ M+ N ++ + + C+ +G +IH ++IK
Sbjct: 80 NALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIK 139
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D F N+L+ Y V + A +F+ + PD+V+W II+G +H A+++
Sbjct: 140 LGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALEL 199
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
++ + PN TL S L AC+ + R+LG+ +H+ ++
Sbjct: 200 LREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ + A L+ M +N T + LK+ + A+ +IHA +K
Sbjct: 282 NAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLK 341
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D ++ NSL+ Y + A ++F D+V +T++++ ++ G +EA+ +
Sbjct: 342 SGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRL 401
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + +KP++ S+L+AC+SL + + GK +H H L+ ++I N++++
Sbjct: 402 YLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVN 457
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F LKAC++ G ++H V+ G D F+ NSL+ Y A +F
Sbjct: 9 NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+++ VV+W + S H EA+ +F + ++PN +L S+++ C+ L
Sbjct: 69 DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ IH + ++ +++ NA++D
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVD 154
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 55 NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114
NK CP N +T + ALKAC+ + G ++H+ +IK D F+ L+ Y
Sbjct: 204 NKSGMCP---NMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKC 260
Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVL 171
+ A +F + D++ W +ISG S+ +EA +F + + N TL +VL
Sbjct: 261 NSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVL 320
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ ++L + + + IHA SL++ E + + N+++D
Sbjct: 321 KSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLID 356
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P + T+++ ++ P+ A+ Y M N +TF LKA L ++Q+G
Sbjct: 86 INYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEG 145
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H ++K G +D+F +N+L+H Y+ I AH +F+ + +VVTW T+I+G C
Sbjct: 146 RIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGC 205
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
G + A +F G + N + +V+ S LG + +++
Sbjct: 206 GDTERARRLF-GEMPERNVGSWNAVVGGYSKLGHVDIARSL 245
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ +++ Q+ A+ L+ +M+ S + T L AC+ A G
Sbjct: 249 MPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMG 308
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IHA++ + +D+F+ +L+ Y I +A +FN++ ++ +W ++SGL+
Sbjct: 309 RWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIH 368
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G A+++F ++ V PN T V+VLSACS +GS + G
Sbjct: 369 GHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEG 409
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 106/213 (49%), Gaps = 16/213 (7%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKIP---QPHILNTLLKLLTQSSTPQNAIPLYNKM 57
+FV L+P S+++ +H +++K+ N L+ + + + +A L+++M
Sbjct: 130 LFVLKAYGLRP--SYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEM 187
Query: 58 LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
N +N T+ + C ++ + + + ++ N+++ Y + +
Sbjct: 188 PN----HNVVTWNTMITGCFGCGDTERARRLFGEMPE----RNVGSWNAVVGGYSKLGHV 239
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
A +F+ + DVV+W ++IS + G EA+++F + V ++ + S+LSAC
Sbjct: 240 DIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSAC 299
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +G+ +G+ IHA+ R+ N++ LD A++D
Sbjct: 300 AQIGALDMGRWIHAYMKRSKLRNDVFLDTALVD 332
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY-VTVKDIFSA 120
S ++Y AL++C +K IHA +I G + D FI + Y V+ ++I A
Sbjct: 23 SKNSNYKTLSALQSCKSTEDLKK---IHAQLIITGQIKDTFIATKTVESYAVSARNIDYA 79
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSS 176
+F + +PD +WTT+I G + ++A++ F G+ V+ N T + VL A
Sbjct: 80 FWVFVGINYPDSYSWTTMIRGFVEAKNPEKALE-FYGLMRQRGVELNKFTFLFVLKAYGL 138
Query: 177 LGSRKLGKAIHA 188
S + G+ +H
Sbjct: 139 RPSYQEGRIVHG 150
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 5/205 (2%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L + + ++ A KI +P + NTLL Q Q+ I L+ +M + +
Sbjct: 81 LASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDR 140
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L +CS G ++H+ +++ +D+F+ + L+ Y I A IFN
Sbjct: 141 TTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNK 200
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ DVV W +IISGL+ +KEA D F + + P ++ S++++CS L S G
Sbjct: 201 MTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHG 260
Query: 184 KAIHAHSLRNLNENNIILDNAVLDF 208
+ IHA +++ + N+ + +A++D
Sbjct: 261 RQIHAQVMKDGYDQNVYVGSALIDM 285
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 7/180 (3%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H+ N+L+ + T+ A+ ++ + + + T + S A K +E+ +
Sbjct: 9 HVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCA----KAVEVLSL 64
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ + G + ++LL + +D+ SA +F+ + P V TW T++SG + H++
Sbjct: 65 MQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDT 124
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
I++F + +V+P+ TL +LS+CS LG G+ +H+ S+R L N++ + + ++D
Sbjct: 125 IELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDM 184
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ LT S + A + +M ++ + +CS + G +IHA V+K
Sbjct: 210 NSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMK 269
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ ++++ ++L+ Y ++ A F++++ ++V W +I G ++ G +A+++
Sbjct: 270 DGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVEL 329
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + KP+A T ++VL+ CS G
Sbjct: 330 FEYMLTTEQKPDAVTFIAVLTGCSHSG 356
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 48 QNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
++ +PLY +L C SS +H TF LKAC+ G + HV K G D+F+ N
Sbjct: 102 RHCLPLYRALL-CSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVN 160
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDV 160
+ +HF+ + A ++F+ DVV+W T+I G + G +EA+++F G V
Sbjct: 161 AGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAV 220
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+P+ T++ +S C+ +G +LGK +H + L NAV+D
Sbjct: 221 RPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMD 267
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q+ + AI L+++M N T L ACS A + G+ +H ++ +
Sbjct: 325 NALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDR 384
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + + SL+ Y +I A IF + + +TWT +I GL+ G EAI+
Sbjct: 385 HQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEY 444
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
F + ++P+ T + VLSAC G K G+
Sbjct: 445 FQRMIDLGLQPDEITFIGVLSACCHAGLVKEGR 477
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 36/209 (17%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
NTL+ +S P+ A+ L+ +++ + + T A+ C+ + G +H V
Sbjct: 191 NTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFV 250
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH---- 148
G + + N+++ YV + A +F + VV+WTT+I G ++ G
Sbjct: 251 DSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDAR 310
Query: 149 ---------------------------KEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
KEAI +F + V PN T+V++LSACS LG
Sbjct: 311 MLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLG 370
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ ++G +H + R+ ++ L +++D
Sbjct: 371 ALEMGMWVHHYIDRHQLYLSVALGTSLVD 399
>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
Length = 644
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q + A+ LY +ML C + TF L A S + + G +H +++
Sbjct: 166 NSLMGAFVQHDRVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVE 225
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH D+ +Q +L++ Y + A ++F+ + DV+ W+ +IS C ++E++ +
Sbjct: 226 AGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRL 285
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + + +PN TLVSVLSAC + + GK IH + E ++I+ NA++
Sbjct: 286 FRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIV 340
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-----NSV 127
L+ CS + +G +IHA + + D + N L+ Y+ + A Q+F SV
Sbjct: 2 LRQCSRSKDLARGRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSV 61
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGK 184
V ++V WT +I+ ++ G K AI +F + ++ P+ TLV++ AC + + + GK
Sbjct: 62 V--NLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGK 119
Query: 185 AIHAH 189
IHA+
Sbjct: 120 KIHAY 124
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 35/195 (17%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ ++ L+ KM + N+ T L AC A + G IH V++ G+ D+ + N++
Sbjct: 280 EESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAI 339
Query: 108 LHFYVTVK------DIF--------------------------SAHQIFNSVVFPDVVTW 135
+ Y D+F A +F+S+ D VTW
Sbjct: 340 VSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFGKARDLFDSMAERDAVTW 399
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T++S + +++I +F + P+ T+++VL+ C+SL + + GKAI A
Sbjct: 400 NTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICAWLDH 459
Query: 193 NLNENNIILDNAVLD 207
N ++ NA+L+
Sbjct: 460 TPLSANQMIGNAILN 474
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + Q +++I L+ +ML + + T L C+ A Q+G I A +
Sbjct: 400 NTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICAWLDH 459
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ I N++L+ Y A +IF+ + D V+W +I + A +
Sbjct: 460 TPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNALIGAYGSYSRGRYAFQI 519
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAI 186
F + ++ P+A T ++LS CS G LG+A+
Sbjct: 520 FQAMQLEGSTPDAVTFTTILSVCSHGG--LLGEAV 552
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ +M +S + T +AC + G +IHA++ D+ + +SL+
Sbjct: 83 AIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKIHAYL---SCNSDVVLGSSLIT 139
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNA 164
Y + A +F S+ + V W +++ + + A++++ CG P+
Sbjct: 140 MYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQHDRVEAAMELYWEMLQCGF--LPSR 197
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T ++VL+A SSL S + GK +H + +E+++++ A+++
Sbjct: 198 PTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQTALVN 240
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 5/204 (2%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L + + ++ A KI +P + NTLL Q Q+ I L+ +M + +
Sbjct: 65 LASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDR 124
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L +CS G ++H+ +++ +D+F+ + L+ Y I A IFN
Sbjct: 125 TTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNK 184
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ DVV W +IISGL+ +KEA D F + + P ++ S++++CS L S G
Sbjct: 185 MTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHG 244
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+ IHA +++ + N+ + +A++D
Sbjct: 245 RQIHAQVMKDGYDQNVYVGSALID 268
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
K +E+ + + + G + ++LL + +D+ SA +F+ + P V TW T++SG
Sbjct: 41 KAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYC 100
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ H++ I++F + +V+P+ TL +LS+CS LG G+ +H+ S+R L N++
Sbjct: 101 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMF 160
Query: 201 LDNAVLD 207
+ + ++D
Sbjct: 161 VASGLVD 167
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ LT S + A + +M ++ + +CS + G +IHA V+K
Sbjct: 194 NSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMK 253
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ ++++ ++L+ Y ++ A F++++ ++V W +I G ++ G +A+++
Sbjct: 254 DGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVEL 313
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + KP+A T ++VL+ CS G
Sbjct: 314 FEYMLTTEQKPDAVTFIAVLTGCSHSG 340
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P +I N++++ + P+ ++ LY +++ S +H+TF LKAC G
Sbjct: 53 IDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCG 112
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH ++K G D + LLH YV+ D+ S ++F+++ +VV WT +I+G
Sbjct: 113 KCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNN 172
Query: 146 GFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-------N 193
EA+ +F CG V+PN T+V+ L C+ G+ +H H + +
Sbjct: 173 NQPYEALKVFKDMSHCG--VEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMS 230
Query: 194 LNENNIILDNAVLDF 208
+ +NIIL A+L+
Sbjct: 231 TSNSNIILATAILEM 245
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-------H 99
P A+ ++ M +C N T AL C+ + G +H H+ K G+
Sbjct: 175 PYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNS 234
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
+I + ++L Y A +FN + ++V+W ++I+ ++ HKEA+D+F +
Sbjct: 235 NIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMW 294
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ P+ T +SVLS C+ L + LG+ +HA+ + +I L A+LD
Sbjct: 295 TSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDM 346
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+PQ +I+ N+++ Q + A+ L+ M + TF L C+ A
Sbjct: 261 KMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALAL 320
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +HA++ K G DI + +LL Y + SA +IF+S+ DVV WT++I+GL+
Sbjct: 321 GQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAM 380
Query: 145 CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
G EA+ MF + + P+ T + VL ACS +G
Sbjct: 381 HGDGNEALGMFQTMHEDSSLVPDHITYIGVLFACSHVG 418
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 104/200 (52%), Gaps = 15/200 (7%)
Query: 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
QIH+ P +I N+++K +S+ P ++ LY +ML S +H+TF LKACS
Sbjct: 64 FRQIHS-----PNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACS 118
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ G +H+ ++K G ++++ LL+ YV K++ S ++F+ + +VV WT
Sbjct: 119 FIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTC 178
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN- 193
+I+G +EA+++F + V+ N T+V+ L AC+ G+ +H +
Sbjct: 179 LINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAG 238
Query: 194 ------LNENNIILDNAVLD 207
+ +N+IL A+++
Sbjct: 239 YDPFVFASNSNVILATAIVE 258
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KIP+ +++ L+ + P+ A+ ++ +M N T AL AC+
Sbjct: 167 KIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDT 226
Query: 85 GLEIHAHVIKYGHLHDIFIQNS-------LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
G +H V K G+ +F NS ++ Y + A ++FN + ++V W
Sbjct: 227 GRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNC 286
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+I+ ++ + EA+ +F + P+ T +SVLS C+ LG+ +HA+ L++
Sbjct: 287 MINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSN 346
Query: 195 NENNIILDNAVLD 207
+I L A+LD
Sbjct: 347 MAKDIALATALLD 359
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 13/162 (8%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHA 81
K+P+ +I+ N ++ Q A+ L+ ML CP + TF L C+
Sbjct: 275 KMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCP---DKATFLSVLSVCARRCV 331
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-NSVVFPDVVTWTTIIS 140
G +HA+++K DI + +LL Y ++ SA +IF NS+ DVV WT++I+
Sbjct: 332 LALGETVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMIN 391
Query: 141 GLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLG 178
L+ G EA+ +F + + P+ T + VL ACS +G
Sbjct: 392 ALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVG 433
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ Q+S A+ L+ +M T T L+AC+ + G++ H H+
Sbjct: 179 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 238
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+L+ Y + A ++FN + DV+TW+T+ISGL++ G+ +EA+
Sbjct: 239 VKYDQ--DLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEAL 296
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + KPN T+V VL ACS G
Sbjct: 297 KLFELMKSSGTKPNYITIVGVLFACSHAG 325
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F LN H ++PQ ++++ T++ ++ Q A+ L ML N YT++
Sbjct: 59 VKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYS 118
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L+AC + +H +IK G D++++++L+ + + + A +F+ +V
Sbjct: 119 SVLRAC---NGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTG 175
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
D + W +II G ++ A+++F + TL SVL AC+ L +LG H
Sbjct: 176 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 235
Query: 188 AHSLRNLNENNIILDNAVLDF 208
H ++ + ++IL+NA++D
Sbjct: 236 VHIVK--YDQDLILNNALVDM 254
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+++ +K C A +G I H+ GH +F+ N L++ YV + AHQ+F+ +
Sbjct: 15 TYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQM 74
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V++WTT+IS SKC H++A+++ + V+PN T SVL AC+ + ++
Sbjct: 75 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRM-- 132
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H ++ E+++ + +A++D
Sbjct: 133 -LHCGIIKEGLESDVYVRSALID 154
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+I T++ + ++A+ +Y+KM N T+ LKAC + G +IHAH
Sbjct: 185 YIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAH 244
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+I+ G D+ ++ +L++ YV I A IF+ +V +V++WT +I GL+ G +EA
Sbjct: 245 IIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 304
Query: 152 IDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+F + + PN+ T VS+L+A +S G+ + K +H+H++
Sbjct: 305 FHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV 347
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q +A + +ML + T+ L AC+ A + E+H H + G + D
Sbjct: 700 LAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSD 759
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ + N+L+H Y I A +F+ +V DV +WT +I GL++ G EA+D F +
Sbjct: 760 LRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKS 819
Query: 160 --VKPNANTLVSVLSACSSLG 178
KPN + V+VL+ACS G
Sbjct: 820 EGFKPNGYSYVAVLTACSHAG 840
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q + A+ L+ +M + TF L A A + E+H+H
Sbjct: 594 NAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATD 653
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L D+ + N+L+H Y ++ A Q+F+ +V +V TWT +I GL++ G +A
Sbjct: 654 AG-LVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSH 712
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
F + + P+A T VS+LSAC+S G+ + K +H H++
Sbjct: 713 FLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAV 752
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 46 TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
T ++A+ + + + + +++ L+ C ++H +IK G ++++ N
Sbjct: 98 TAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVAN 157
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF------CGID 159
LL Y+ + A Q+F+ ++ ++ WTT+I G ++ G ++A+ ++ CG
Sbjct: 158 KLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECG-- 215
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+PN T +S+L AC + K GK IHAH +++ ++++ ++ A+++
Sbjct: 216 -QPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVN 262
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
Q A L+ +M N YT+ L A + A A + E+H+H + G D+ + N+L
Sbjct: 302 QEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNAL 361
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNA 164
+H Y I A +F+ + D+ +WT +I GL++ G +EA +F + PN
Sbjct: 362 VHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNL 421
Query: 165 NTLVSVL--SACSSLGSRKLGKAIHAHS 190
T +S+L SA +S + + K +H H+
Sbjct: 422 TTYLSILNASAIASTSALEWVKVVHKHA 449
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE----IHAHVIKYG 96
L Q Q A L+ +M N T+ L A ++A LE +H H + G
Sbjct: 396 LAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST--SALEWVKVVHKHAEEAG 453
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ D+ I N+L+H Y I A +F+ + DV++W ++ GL++ G EA +F
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFL 513
Query: 157 GIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ + P++ T +S+L+ S + + +H H++
Sbjct: 514 QMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAV 551
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS--K 144
E+H H ++ G + D + ++ +H Y+ I A +F+ + V TW +I G + +
Sbjct: 545 EVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQR 604
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHS 190
CG +EA+ +F + + P+A T +++LSA + + K +H+H+
Sbjct: 605 CG--REALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHA 651
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 10/184 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P +I NT++ L+ S + YN +L+ N TF L+A + ++I
Sbjct: 95 PNLYIYNTMISALSLSL--NQSFAFYNSLLSSCIYPNRSTFLFLLQASKFL---SQVMQI 149
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H H I G + ++QN+L+ Y+ + + A+Q+F + PD V++ +I G +K G +
Sbjct: 150 HCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHN 209
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNIILDN 203
EA+ G+ +KP+ T++ +L C LG +LGK++HA R + +N+IL+N
Sbjct: 210 IEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNN 269
Query: 204 AVLD 207
A+LD
Sbjct: 270 ALLD 273
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + A + A G IH V++ D F+ ++ + Y I A +F V
Sbjct: 364 TIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREV 423
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLG 178
DV WTT+I+G + G+ +A+ +F + V PN T V+VL+ACS G
Sbjct: 424 TEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSG 476
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 36/194 (18%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH--DIFIQNSL 107
A+ ++M+ + +T L C Q G +HA + + G + ++ + N+L
Sbjct: 212 ALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNAL 271
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG----FHKEAIDMFC------- 156
L YV K++ A IFN +V D ++W T+I+G +K G H DM C
Sbjct: 272 LDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWN 331
Query: 157 -----------------------GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
++ P+ T+++++SA + +G+ G+ IH +R
Sbjct: 332 SIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRM 391
Query: 194 LNENNIILDNAVLD 207
+ + L +A +D
Sbjct: 392 QMKIDAFLGSAFID 405
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH----QKGLE 87
++ N L + LT + + + LY KM + +T+T LKAC + KG E
Sbjct: 144 YVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKE 203
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHAH+ + G+ ++I +L+ Y + A +F + +VV+W+ +I+ +K G
Sbjct: 204 IHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGK 263
Query: 148 HKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
EA+ F + D PN+ T+VSVL AC+SL + + GK IH + LR
Sbjct: 264 AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR 313
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
SS N T L+AC+ A ++G IH ++++ G + + ++L+ Y +
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQ 340
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
++F+ + DVV+W ++IS G+ K+AI +F P T VSVL ACS G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400
Query: 179 SRKLGKAI 186
+ GK +
Sbjct: 401 LVEEGKRL 408
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 11/180 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ L + + AI ++L+ SS + T+ + C + L +H H++
Sbjct: 50 NQLIQSLCKEGKLKQAI----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ L+ Y + + A ++F+ + W + L+ G +E + +
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165
Query: 155 FCG---IDVKPNANTLVSVLSAC----SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ I V+ + T VL AC ++ GK IHAH R +++ + ++D
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVD 225
>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
Length = 580
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + +L + + P A+ Y +L ++ + FT KAC+ A + G+ I
Sbjct: 68 PDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGMGI 127
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HAH + G + F+Q SL+ Y + A ++F+++ VV W +ISG + G
Sbjct: 128 HAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLA 187
Query: 149 KEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
AI+++ + + P++ T V+ LSAC+ G+ LG+ + + E N++L A+
Sbjct: 188 GRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAAL 247
Query: 206 LDF 208
++
Sbjct: 248 VNM 250
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI +Y +M + + TF L AC+ A A G ++ ++
Sbjct: 175 NAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVS 234
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + +L++ Y + A + FN + +VVTWT++I+G G EA+ +
Sbjct: 235 ERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKL 294
Query: 155 FCGIDVK---PNANTLVSVLSACSSLG 178
F + + PN T V+VLSAC+ G
Sbjct: 295 FNLMRQQGPPPNDVTFVAVLSACAHAG 321
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 100/178 (56%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +T+LK ++S+ +A+ + +M Y FT LK C +KG EIH +
Sbjct: 142 LYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQL 201
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I G ++F +++ Y + + A+++F+ + D+V W TIISG ++ GF K A+
Sbjct: 202 IVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTAL 261
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ + +P++ T+VS+L A + +GS ++G++IH +S+R E+ + + A++D
Sbjct: 262 ELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVD 319
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ P A+ ++ KM++ + T AL AC+ ++G +H + +
Sbjct: 346 NSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQ 405
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ + NSL+ Y K + A +IF ++ +V+W +I G ++ G EAID
Sbjct: 406 LELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDY 465
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
FC + ++KP++ T+VSV+ A + L K IH +R + N+ + A++D
Sbjct: 466 FCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVD 521
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI + KM + +T + A + + IH VI+
Sbjct: 447 NAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIR 506
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++F+ +L+ Y + +A ++F+ + V TW +I G G K A+++
Sbjct: 507 TCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALEL 566
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + +KPN T + VLSACS G
Sbjct: 567 FEKMKKEVIKPNEVTFLCVLSACSHSG 593
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ + A+ L +M + T L A + + + G IH + ++
Sbjct: 245 NTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMR 304
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + +L+ Y + +A IF+ + VV+W ++I G + G A+++
Sbjct: 305 AGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEI 364
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
F + V+ T++ L AC+ LG + G+ +H
Sbjct: 365 FQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVH 400
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + ++A+ LY +M +++TF + LKAC + Q G +H HV++
Sbjct: 126 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 185
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ N+L+ Y I A ++F+ + + D+V+W ++++G ++ G H EA+D+
Sbjct: 186 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 245
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + +P++ L ++LS SS+ K IH +R+ E N+ + N+++
Sbjct: 246 FDQMIQEGYEPDSVALSTLLSNISSM---KFKLHIHGWVIRHGVEWNLSIANSLI 297
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
F+ L+ C A G+ IH + ++ I + LL Y + + AHQ+F+ +
Sbjct: 57 FSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMG 116
Query: 129 FPD--VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+ W ++ISG ++ G +++A+ ++ ++ V+P+ T VL AC +GS ++G
Sbjct: 117 NRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIG 176
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+A+H H +R+ ++ + NA++D
Sbjct: 177 EAVHRHVVRSGFAGDVFVLNALVD 200
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L IH VI++G ++ I NSL+ Y + A +F + D+V+W +IIS
Sbjct: 275 LHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNS 334
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++ + V P+ T VS+LS C+ LG K G ++
Sbjct: 335 AEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLY 376
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 35/214 (16%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N +++ + S P+ +I +Y ++L S +H T+ LK+ S + G +
Sbjct: 817 PPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKSSSRLSNREIGGSL 876
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKD-------------------------------I 117
H V+K G D+FI N+L+H Y + +D +
Sbjct: 877 HCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNLVTWNSILDSYAKSGDV 936
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSA 173
SA +F+ + DVVTW+++I G K G + EA+++F + K N T+VSVL A
Sbjct: 937 VSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCA 996
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C+ LG GK +H + L +IL +++D
Sbjct: 997 CAHLGELNRGKVVHRYILDVHLPLTVILQTSLID 1030
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSS-YNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
++++ +S A+ ++++M+ SS N T L AC+ +G +H +++
Sbjct: 955 SSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRYIL 1014
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF--NSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ +Q SL+ Y I A +F SV D + W +I GL+ GF +E+
Sbjct: 1015 DVHLPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRES 1074
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ +F + ++ P+ T + +L+ACS G
Sbjct: 1075 LLLFHKMRESEIDPDEITFLCLLAACSHGG 1104
>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Brachypodium distachyon]
Length = 678
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 106/187 (56%), Gaps = 7/187 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++++ ++L Q+ + + L+N+M + YT L AC++ + +
Sbjct: 187 RIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQ 246
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH V+K+G + + FI ++L YV + A Q+F+ + F D+V WTT+I G ++
Sbjct: 247 GRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQ 306
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
G +A+ +F + + PN+ T+ +VLSA + L + LG++IH S++ EN+++
Sbjct: 307 NGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVV 366
Query: 201 LDNAVLD 207
+ NA++D
Sbjct: 367 M-NALVD 372
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLY--NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
T++ TQ+ +P +A+ L+ +K + N T L A + G IH +
Sbjct: 299 TMIVGYTQNGSPLDALLLFVDDKFMRIVP--NSVTIATVLSASAQLRNLSLGRSIHGISV 356
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + + + N+L+ Y K + A IF V+ DVVTW ++I+G ++ +A+
Sbjct: 357 KLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALM 416
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+F + V+ P+A ++V+ LSAC LG +GK H +++++ +NI ++ A+L+
Sbjct: 417 LFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNL 474
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 60 CPSSYNHYT-FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
CP+ + ALKA + G +H V+K G D+F+ N+L+ Y D+
Sbjct: 121 CPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGG-GDLFVMNNLVDMYAKGGDLK 179
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
+A ++F+ + +VV+WT+++SG + G KE + +F + + P+ T+ SVL AC+
Sbjct: 180 NARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACT 239
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LGS G+ IH +++ +N + A+LD
Sbjct: 240 MLGSLHQGRLIHGSVMKHGLVSNHFITAAMLD 271
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ ++ +A+ L++ M S + + AL AC G H + +K
Sbjct: 399 NSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVK 458
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + +I++ +LL+ Y D+ SA ++F+ + + VTW +I G G +ID+
Sbjct: 459 HAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDL 518
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + +++PN S+LS CS G +GK
Sbjct: 519 FNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGK 551
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA ++ +G L + LL Y + D+ SA ++ + PD T+ + + G
Sbjct: 47 LHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAAGR 106
Query: 148 HKEAI 152
H EA+
Sbjct: 107 HAEAV 111
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q+S P+ A+ LY +M + + +T L ACS + G EIH ++
Sbjct: 279 NALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR 338
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D FI SLL Y+ F+A +F+ + +V+W +I+G S+ G EAI++
Sbjct: 339 NGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINL 398
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P ++ V ACS L + +LGK +H +L+ +I + ++++D
Sbjct: 399 FRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIID 454
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ P AI L+ +ML+ ACS A + G E+H +K
Sbjct: 380 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK 439
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF+ +S++ Y I + +IF+ + DV +W II+G G KEA+++
Sbjct: 440 AHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALEL 499
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + +KP+ T +L ACS G
Sbjct: 500 FEKMLRLGLKPDDFTFTGILMACSHAG 526
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ T++ ++A+ +++++++ +++T +KAC+ G IH
Sbjct: 176 NAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMAT 235
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSA-HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K + D+F+ N+L+ Y + A ++F+ + V +W ++ G ++ ++A+
Sbjct: 236 KMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKAL 295
Query: 153 DMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
D++ G+D P+ T+ S+L ACS + S G+ IH +LRN
Sbjct: 296 DLYLQMTDSGLD--PDWFTIGSLLLACSRMKSLHYGEEIHGFALRN 339
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS-LLHFYVTVKDIFSAHQIFNSVVFPD 131
L+AC + G +H V + F+ N+ ++ Y + +F+ + +
Sbjct: 112 LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 171
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ W I+S ++ ++A+ +F + + KP+ TL V+ AC+ L LG+ IH
Sbjct: 172 LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 231
Query: 188 AHSLRNLNENNIILDNAVL 206
+ + +++ + NA++
Sbjct: 232 GMATKMDLVSDVFVGNALI 250
Score = 37.4 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 35/160 (21%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ KML + +TFT L ACS A + GLE ++ +LH+I
Sbjct: 494 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML---NLHNI------ 544
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL 167
P + +T ++ L + G +A+ + + P++
Sbjct: 545 ---------------------EPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 583
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLN----ENNIILDN 203
S+LS+C G+ LG+ + A+ L L EN +++ N
Sbjct: 584 SSLLSSCRIHGNLGLGEKV-ANKLLELEPEKPENYVLISN 622
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q+S P+ A+ LY +M + + +T L ACS + G EIH ++
Sbjct: 377 NALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR 436
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D FI SLL Y+ F+A +F+ + +V+W +I+G S+ G EAI++
Sbjct: 437 NGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINL 496
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P ++ V ACS L + +LGK +H +L+ +I + ++++D
Sbjct: 497 FRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIID 552
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ P AI L+ +ML+ ACS A + G E+H +K
Sbjct: 478 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK 537
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF+ +S++ Y I + +IF+ + DV +W II+G G KEA+++
Sbjct: 538 AHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALEL 597
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + +KP+ T +L ACS G
Sbjct: 598 FEKMLRLGLKPDDFTFTGILMACSHAG 624
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ T++ ++A+ +++++++ +++T +KAC+ G IH
Sbjct: 69 NAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMAT 128
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K + D+F+ N+L+ Y + A ++F + ++V+W +II G S+ GF +E+ +
Sbjct: 129 KMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFN 188
Query: 154 MFCGIDVK-----PNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLD 207
F + V P+ TLV+VL C+ + G A+H +++ LNE ++++N+++D
Sbjct: 189 AFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE-ELMVNNSLID 247
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +T L C Q E+H + ++G + + N+ + Y + S+ ++F
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGS 179
+ + V +W ++ G ++ ++A+D++ G+D P+ T+ S+L ACS + S
Sbjct: 366 DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD--PDWFTIGSLLLACSRMKS 423
Query: 180 RKLGKAIHAHSLRN 193
G+ IH +LRN
Sbjct: 424 LHYGEEIHGFALRN 437
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 85/182 (46%), Gaps = 13/182 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
N+++ +++ Q + + +ML S+ + T L C+ +KG+ +H
Sbjct: 171 NSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLA 230
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G ++ + NSL+ Y + + A +F+ ++V+W ++I G ++ ++
Sbjct: 231 VKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAR---EEDVC 287
Query: 153 DMFCGI------DVKPNAN--TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
F + D K A+ T+++VL C + K +H +S R+ ++N ++ NA
Sbjct: 288 RTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANA 347
Query: 205 VL 206
+
Sbjct: 348 FI 349
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS-LLHFYVTVKDIFSAHQIFNSVVFPD 131
L+AC + G +H V + F+ N+ ++ Y + +F+ + +
Sbjct: 5 LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ W I+S ++ ++A+ +F + + KP+ TL V+ AC+ L LG+ IH
Sbjct: 65 LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 124
Query: 188 AHSLRNLNENNIILDNAVL 206
+ + +++ + NA++
Sbjct: 125 GMATKMDLVSDVFVGNALI 143
Score = 37.4 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 35/160 (21%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ KML + +TFT L ACS A + GLE ++ +LH+I
Sbjct: 592 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML---NLHNI------ 642
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL 167
P + +T ++ L + G +A+ + + P++
Sbjct: 643 ---------------------EPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 681
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLN----ENNIILDN 203
S+LS+C G+ LG+ + A+ L L EN +++ N
Sbjct: 682 SSLLSSCRIHGNLGLGEKV-ANKLLELEPEKPENYVLISN 720
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ +AI +Y +ML + TF +KAC +A G ++H HVIK G+ H +
Sbjct: 234 SQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHL 293
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCG 157
QN+L+ Y I A +F + D+++W ++I+G ++ G+ EA+ DMF
Sbjct: 294 IAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQ 353
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+PN SV SAC SL + G+ IH
Sbjct: 354 GFYQPNEFIFGSVFSACRSLLEPEFGRQIHG 384
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 38/215 (17%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAI------- 51
F++ L + ++ Q QIH+ IIKI + + N+LL + T+ S +A
Sbjct: 464 FLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVS 523
Query: 52 -------------------------PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
L+ ML + ++ T T L C+ + + G
Sbjct: 524 ENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGN 583
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H +K G + D+ + N L+ Y + A +F S PD+V+W+++I G ++ G
Sbjct: 584 QVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFG 643
Query: 147 FHKEAIDMFC---GIDVKPNANTLVSVLSACSSLG 178
EA+++F + V+PN T + VLSACS +G
Sbjct: 644 LGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIG 678
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+ + AC+ + + G +IH H++K D+ +QN +L+ Y + A + F+++
Sbjct: 159 TYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTM 218
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+VV+WT +ISG S+ G +AI M+ + P+ T S++ AC G LG+
Sbjct: 219 QLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGR 278
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
+H H +++ ++++I NA++
Sbjct: 279 QLHGHVIKSGYDHHLIAQNALI 300
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F AC + G +IH K+G ++F SL Y + SA + F
Sbjct: 359 NEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAF 418
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ PD+V+W II+ S G EAI FC + + P+ T +S+L AC S +
Sbjct: 419 YQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTIN 478
Query: 182 LGKAIHAHSLR 192
G IH++ ++
Sbjct: 479 QGTQIHSYIIK 489
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ + S AI + +M++ + TF L AC +G
Sbjct: 421 IESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQG 480
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSK 144
+IH+++IK G + + NSLL Y ++ A +F V ++V+W I LS
Sbjct: 481 TQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAI---LSA 537
Query: 145 CGFHKEAIDMFCGIDV------KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
C HK+A ++F + KP+ T+ ++L C+ L S ++G +H S+++ +
Sbjct: 538 CLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVD 597
Query: 199 IILDNAVLD 207
+ + N ++D
Sbjct: 598 VSVSNRLID 606
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ +Q + A+ +Y +M + + + F+ AC+ A+++G +IH HV+K
Sbjct: 461 SMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC 520
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G L D+F NSL++ Y I A IFN + + +V+W+ +I GL++ G ++A+ +F
Sbjct: 521 GLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLF 580
Query: 156 CGI---DVKPNANTLVSVLSACSSLG 178
+ + PN TLVSVLSAC+ G
Sbjct: 581 YQMLKNGILPNHITLVSVLSACNHAG 606
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ + A+ L+ M +N T + LK+ + + A+ ++H
Sbjct: 357 VWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTIS 416
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK G+ +D ++ NSLL Y + A ++F D+V +T++I+ S+ G +EA+
Sbjct: 417 IKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEAL 476
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
M+ + D+KP+A S+ +AC++L + + GK IH H L+
Sbjct: 477 KMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK 519
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 9/148 (6%)
Query: 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110
+ L +M++ S N ++ + L AC+ G+++H ++IK G+ D F N+LL
Sbjct: 173 VALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDM 232
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE---AIDMFCGID---VKPNA 164
Y +A +F + PD+V+W +I+G C H++ A+ + + V P+
Sbjct: 233 YAKSGCPEAAIAVFYEIPKPDIVSWNAVIAG---CVLHEKNDLALKLLGKMGSYRVAPSM 289
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
TL S L AC+++G KLG+ +H+ ++
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMK 317
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 94/190 (49%), Gaps = 5/190 (2%)
Query: 23 AQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
A +IP+P I+ N ++ A+ L KM + + + +T + ALKAC+
Sbjct: 244 AVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIG 303
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+ G ++H+ ++K D F+ L+ Y + A +F+ + DV+ W +IIS
Sbjct: 304 LVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIIS 363
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
G S CG+ EA+ +F + ++ N TL ++L + + + + +H S+++ +
Sbjct: 364 GYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQY 423
Query: 198 NIILDNAVLD 207
+ + N++LD
Sbjct: 424 DGYVANSLLD 433
Score = 42.7 bits (99), Expect = 0.090, Method: Composition-based stats.
Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
++F L+ + + K +P I+NT +K + S+ N + + +L+ S+ + ++ +
Sbjct: 1 MNFPHLHSLRTVLRKPLKPFIVNTSVKYI--SNLRPNDVSGF--ILDSSSNPSSISYPKL 56
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L + + G+ IHA +I+ G L ++N L++ Y + A ++ PD+
Sbjct: 57 LLQFTASKDVSSGMAIHARIIRLGLLG---LRNRLVNLYSKCQCFRVARKLVIDSSEPDL 113
Query: 133 VTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
V+W+ +ISG + G +EA+ +M+ + K N T SVL CS + +LGK IH
Sbjct: 114 VSWSALISGYVQNGRGEEALLTYYEMYL-LGAKGNEFTFSSVLKGCSLTRNLELGKQIHR 172
Query: 189 HSL 191
+L
Sbjct: 173 VAL 175
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 29 PQPHILNTLLK-----LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
P+ NTL++ P A+ L+ M++ + YTF KAC+ A Q
Sbjct: 96 PEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQ 155
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT--WTTIISG 141
+G ++ H++K G D QNSL+ FY + A + F + + T W+ +++
Sbjct: 156 EGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAA 215
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ G E ++ F + +P+ +++VS LSAC+ LG+ +G++IH LRN N
Sbjct: 216 YTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLN 275
Query: 199 IILDNAVLDF 208
+ +++D
Sbjct: 276 TFMSTSLVDM 285
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL T++ + + M+ + + AL AC+ AH G IH +++
Sbjct: 210 SALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLR 269
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ SL+ Y I +A +F+++ + T++ ++SGL+ G ++A+++
Sbjct: 270 NTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEV 329
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +P+A V VL+ACS G
Sbjct: 330 FDAMVREGHRPDAAVYVGVLNACSRAG 356
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+ +ML N +T L +C+ A + G +IH+ +IK + IF+ +SLL Y
Sbjct: 563 LFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIKCNYDSHIFVGSSLLDMYA 622
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVS 169
I A +F S+ DVV+ T IISG ++ G +EA+++F ++ + N T S
Sbjct: 623 KAGRILEARMVFESLPERDVVSCTAIISGYAQLGLDEEALELFRRLEREGLSSNCVTYAS 682
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VL++ S L + GK +H+H LR ++L N+++D
Sbjct: 683 VLTSLSGLAALDHGKQVHSHVLRRELPFYVVLQNSMID 720
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L C A ++G +HAH+IK +L ++++ L+ FY + A +F+ +
Sbjct: 478 YNTLLNECVNNKAIREGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMS 537
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+VV+WT +ISG S+ GF E + +F + D++PN TL +VL++C+ +LG+
Sbjct: 538 ERNVVSWTAMISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQ 597
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH+ ++ +++I + +++LD
Sbjct: 598 IHSLIIKCNYDSHIFVGSSLLD 619
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ ++ S N T+ L + S A G ++H+HV++ + +QNS+
Sbjct: 659 EEALELFRRLEREGLSSNCVTYASVLTSLSGLAALDHGKQVHSHVLRRELPFYVVLQNSM 718
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
+ Y + A +IF+S+ V++W ++ G K G +E +++F + VKP+
Sbjct: 719 IDMYSKCGSLNYARRIFDSMPERTVISWNAMLVGYGKHGMGREVVELFKLMRTENKVKPD 778
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ T+++VLS CS G G I L+
Sbjct: 779 SVTILAVLSGCSHGGFEDKGLEIFDEMLK 807
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 108/198 (54%), Gaps = 5/198 (2%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F QL+ +P +++ N ++ Q+ A L+++M++ S + TF
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L + + + + ++G EIH +++++G D+F++++L+ Y +D+ A +IF D+
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V T IISG G + +A+++F + + PNA TL SVL AC+ L + LGK +HA+
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300
Query: 190 SLRNLNENNIILDNAVLD 207
L++ + + +A++D
Sbjct: 301 ILKHGLDERRHVGSAIMD 318
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L + P +A+ ++ M NC + N TF L C+ + G ++H VI
Sbjct: 42 NVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVIS 101
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + N+L+ Y + A ++FN++ +VVTW +I+G + GF EA +
Sbjct: 102 CGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLL 161
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + V P++ T S L + + S K GK IH + LR+ ++ L +A++D
Sbjct: 162 FSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALID 217
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ ++ +L S N T L AC+ G E+HA+++K+G + ++++
Sbjct: 258 DALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIM 317
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV 168
Y + A+QIF + D V W II+ S+ G +EAID+F + + + V
Sbjct: 318 DMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCV 377
Query: 169 SV---LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+ LSAC++L + GKAIH+ ++ ++ + ++A++D
Sbjct: 378 SISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALID 419
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ PQ AI L+ +M SY+ + + AL AC+ A G IH+ +IK
Sbjct: 345 NAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIK 404
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++F +++L+ Y ++ A +F+ + + V+W +II+ G + ++ +
Sbjct: 405 GAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLAL 464
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + ++P+ T +++LSAC G
Sbjct: 465 FHKMLEDGIQPDHVTFLTILSACGHAG 491
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
D F+ +SL+ Y I A ++F+ + D V W +++G KCG A+ +F +
Sbjct: 6 DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
KPN+ T SVLS C+S + G +H
Sbjct: 66 NCQTKPNSITFASVLSICASEALSEFGNQLHG 97
>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 577
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 6/165 (3%)
Query: 28 IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
+ H L+ L ++ A+ L+ +ML +S N +TF L AC+ KG E
Sbjct: 239 VKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKE 298
Query: 88 IHAHVIKYG---HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
IH +I+ + ++++ N+L+ Y D+ SA +FN ++ DVV+W ++I+G ++
Sbjct: 299 IHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQ 358
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
G +EA+ F + ++PN T ++VLSACS G G I
Sbjct: 359 NGLGREALLAFRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCI 403
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
D+ S++ Y + A ++F+ + +V TWT +I+ L K + EA+D+F +
Sbjct: 209 RDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQM 268
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR---NLNENNIILDNAVLD 207
PNA T V VLSAC+ L GK IH +R LN N+ + NA++D
Sbjct: 269 LEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALID 323
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 81/167 (48%), Gaps = 37/167 (22%)
Query: 78 LAHAHQK-GLEIHAHVIKYGHLHDIFIQNSLLHFY---------------VTVKDIFS-- 119
+ H H + G+ +H+H+IK D+F+ N L+ Y + +++I S
Sbjct: 22 IQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWN 81
Query: 120 --------------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-----V 160
A ++F+ + P++V++ T+IS + G + E++++F + +
Sbjct: 82 TILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLL 141
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ TLVS+ C+ LG+ + + +H ++ E N+I+ NA++D
Sbjct: 142 ALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVD 188
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 5/171 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ+ P+ A+ L+ + N T +CS G IH IK G D
Sbjct: 280 TQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGS-RDP 338
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ NSL+ FY + A +F ++ DVV W +IIS S+ G EA+++F +
Sbjct: 339 IVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMG 398
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILDNAVLDF 208
V P+A TLVSVLSAC+SL + ++G + HA+++ R L +N+ + A+L F
Sbjct: 399 SVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTF 449
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 37/244 (15%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHIL-------------------------- 34
+F + LK+ + +F + ++H QI+K P
Sbjct: 105 VFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTGLVDMYAKCGEIECSRSVFDENL 164
Query: 35 -------NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
++++ Q++ Q+ + L+N+M N T + AC A +G
Sbjct: 165 DRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKW 224
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H ++IK G ++ +LL Y + A +F+ + D+V+WT +I G ++ G
Sbjct: 225 LHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGC 284
Query: 148 HKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+EA+ +F + V PN T+ SV S+CS L + LG++IH S++ L + I+ N+
Sbjct: 285 PEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIK-LGSRDPIVTNS 343
Query: 205 VLDF 208
++DF
Sbjct: 344 LVDF 347
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ + A+ L+++M + T L AC+ +A Q G HA+ +K
Sbjct: 373 NSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVK 432
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G L ++++ +LL FY D SA IF+ + VTW+ +ISG G + ++
Sbjct: 433 RGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLS 492
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + ++KPN S+LSACS G
Sbjct: 493 IFGDMLKAELKPNEEIFTSILSACSHTG 520
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 99/200 (49%), Gaps = 6/200 (3%)
Query: 14 SFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
SF +L+ IP P L+ +++ +S ++ + YN+M C ++ F+
Sbjct: 49 SFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSH 108
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
LKACS + +G ++H ++K+G+ D F+ L+ Y +I + +F+ + +
Sbjct: 109 VLKACSESRNFDEGRKVHCQIVKFGN-PDSFVFTGLVDMYAKCGEIECSRSVFDENLDRN 167
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
V +W+++I+G + ++ + +F + ++ N TL ++ AC LG+ GK +H
Sbjct: 168 VFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHG 227
Query: 189 HSLRNLNENNIILDNAVLDF 208
+ ++ E L A+LD
Sbjct: 228 YLIKCGIELGSYLVTALLDL 247
Score = 37.0 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+E+HA+++ G D+ L+ Y + + A +F+++ PD ++W II
Sbjct: 22 MEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLN 81
Query: 146 GFHKEAIDMFCGIDV--KPNANTLVS-VLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
++ + + + V K N + S VL ACS + G+ +H ++ N ++ +
Sbjct: 82 SEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFT 141
Query: 203 NAV 205
V
Sbjct: 142 GLV 144
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 5/194 (2%)
Query: 18 LNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
+ H +P+ ++ TLL Q+S P A+ L+ KML + ++YT L A
Sbjct: 115 MESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNA 174
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
CS + + G ++HA++IKY D I NSL FY + + A + F + DV++W
Sbjct: 175 CSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 234
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T++IS G ++ F + +KPN TL SVLSAC + + LG IH+ S++
Sbjct: 235 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK 294
Query: 193 NLNENNIILDNAVL 206
++I++ N+++
Sbjct: 295 LGYGSSILIKNSIM 308
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ ++ K+ + +TF+ L CS A ++G +IH +IK G L D+ + +L+
Sbjct: 361 TALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALV 420
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNAN 165
Y I A + F + +++WT++I+G ++ G ++A+ +F + +KPN
Sbjct: 421 SMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQV 480
Query: 166 TLVSVLSACSSLG 178
T V VLSACS G
Sbjct: 481 TFVGVLSACSHAG 493
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
++ + ML+ N YT T L AC + G +IH+ IK G+ I I+NS++
Sbjct: 249 RSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIM 308
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK--------CGFHKE---AIDMFCG 157
+ Y+ + A ++F + ++VTW +I+G +K HK A+ MF
Sbjct: 309 YLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQK 368
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +KP+ T SVLS CS+L + + G+ IH +++ ++++ A++
Sbjct: 369 LYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALV 420
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH H++K G D+F+ L++ Y + SAH++F+++ +V WTT+++G +
Sbjct: 86 IHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSH 145
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
A+ +F + P+ TL VL+ACSSL S + GK +HA+ ++
Sbjct: 146 PLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIK 193
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 34/198 (17%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P I NTL+K ++ ++A+ ++ KML ++YT LKAC H G
Sbjct: 67 IQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFG 126
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH + K G + DI++ NSL+ Y D+ +A +F+ + +VV+W+ +ISG +K
Sbjct: 127 KMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKV 186
Query: 146 G-------FHKEAIDMFCGI---------------------------DVKPNANTLVSVL 171
G F EA + GI D+ P+ + VS+L
Sbjct: 187 GDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSIL 246
Query: 172 SACSSLGSRKLGKAIHAH 189
SAC+ LG+ ++G IH H
Sbjct: 247 SACAHLGALEIGVWIHQH 264
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I ++ Q+S + ++ L+ M + F L AC+ A + G+ IH H+
Sbjct: 206 IWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHL 265
Query: 93 --IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+K L + + SLL Y ++ A ++F+S+ DVV W +ISG++ G K
Sbjct: 266 NQLKLVPL-SVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKG 324
Query: 151 AIDMFCGID---VKPNANTLVSVLSACSSLG 178
A+ +F ++ VKP+ T ++V +ACS G
Sbjct: 325 ALKLFYDMEKVGVKPDDITFIAVFTACSYSG 355
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + ++A+ LY +M +++TF + LKAC + Q G +H HV++
Sbjct: 126 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 185
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ N+L+ Y I A ++F+ + + D+V+W ++++G ++ G H EA+D+
Sbjct: 186 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 245
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + +P++ L ++LS SS+ K IH +R+ E N+ + N+++
Sbjct: 246 FDQMIQEGYEPDSVALSTLLSNISSM---KFKLHIHGWVIRHGVEWNLSIANSLI 297
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
F+ L+ C A G+ IH + ++ I + LL Y + + AHQ+F+ +
Sbjct: 57 FSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMG 116
Query: 129 FPD--VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+ W ++ISG ++ G +++A+ ++ ++ V+P+ T VL AC +GS ++G
Sbjct: 117 NRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIG 176
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+A+H H +R+ ++ + NA++D
Sbjct: 177 EAVHRHVVRSGFAGDVFVLNALVD 200
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L IH VI++G ++ I NSL+ Y + A +F + D+V+W +IIS
Sbjct: 275 LHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNS 334
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++ + V P+ T VS+LS C+ LG K G ++
Sbjct: 335 AEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELY 376
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ LY +M Y + L AC+ Q G IH V K G + F
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
+ N+L+ Y+ + A ++F +++ D VT+ T+ISG ++CG A+ +F +
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ P++ T+ S+L+ACS++G + GK +H++ L+ + I++ ++LD
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDL 288
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ KM + YN +TF ++ A + ++G +IHA VIK
Sbjct: 516 NGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIK 575
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + I N+L+ Y I A F + + V+W TII+ S+ G EA+D+
Sbjct: 576 TGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDL 635
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + +KP+ T V VL+ACS +G
Sbjct: 636 FDQMKQQGLKPSDVTFVGVLTACSHVG 662
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ + +M C ++ A+ AC+ A +G +IHA V G+ D+ I N L
Sbjct: 428 KEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGL 487
Query: 108 LHFYVTV---KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VK 161
++ Y K+ FS+ F ++ + +TW +ISG ++ G ++EA+ +F +D K
Sbjct: 488 VYLYARCGISKEAFSS---FEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAK 544
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
N T VS +SA ++L K GK IHA ++ + + NA++
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISL 591
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 3/177 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NTL+ Q A+ ++++M S + T L ACS +KG ++H++++
Sbjct: 212 FNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLL 271
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D ++ SLL YV DI A QIF+S +VV W ++ + ++ D
Sbjct: 272 KAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFD 331
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F V+PN T +L C+ G LG+ IH+ +++N ++++ + ++D
Sbjct: 332 IFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLID 388
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL--EIHAHV 92
N +L Q + ++ +ML N +T+ L+ C+ H + GL +IH+
Sbjct: 314 NLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCT--HTGEIGLGEQIHSLT 371
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK G D+++ L+ Y + A +I + + DVV+WT++I+G + F KEA+
Sbjct: 372 IKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEAL 431
Query: 153 DMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ F CGI P+ L S +SAC+ + + G IHA
Sbjct: 432 ETFKEMQACGI--WPDNIGLASAISACAGIKAVHQGSQIHA 470
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL-EIHAHVIKYGHLHDIFIQN 105
P+ +PL+ F AL+AC + + EIHA I G I N
Sbjct: 22 PEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGN 81
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKP 162
L+ Y + A ++F + D V+W ++SG ++ G +EA+ ++ + V P
Sbjct: 82 LLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVP 141
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L S+LSAC+ +LG+ IH + + + NA++
Sbjct: 142 TPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISL 187
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q ++A+ + +M C ++ A+ C+ +A ++GL+IHA + G+ D+
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
I N+L++ Y I A F + D +TW ++SG ++ G H+EA+ +F +D
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG 542
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
VK N T VS LSA ++L K GK IHA ++ + + NA++
Sbjct: 543 VKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L Q+ + A+ LY +M Y + L +C+ A +G IHA K+G
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHG 173
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+IF+ N+++ Y+ A ++F + D VT+ T+ISG ++CG + A+++F
Sbjct: 174 FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + P+ T+ S+L+AC+SLG + G +H++ + ++ I++ ++LD
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL 288
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M +N +TF AL A + ++G +IHA VIK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + N+L+ Y A F+ + + V+W TII+ S+ G EA+D+
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDL 635
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + +KPN T + VL+ACS +G
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVG 662
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 31 PH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
PH NTL+ Q ++A+ ++ +M S + T + L AC+ QKG
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H+++ K G D ++ SLL YV D+ +A IFNS +VV W ++ +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++ ++FC + ++PN T +L C+ LG+ IH+ S++ E+++ +
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSG 384
Query: 204 AVLD 207
++D
Sbjct: 385 VLID 388
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q + + L+ +M N +T+ L+ C+ G +IH+ +K
Sbjct: 314 NLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVK 373
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ L+ Y + A ++ + DVV+WT++I+G + K+A+
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAA 433
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F CGI P+ L S +S C+ + + + G IHA
Sbjct: 434 FKEMQKCGI--WPDNIGLASAISGCAGINAMRQGLQIHA 470
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 69 FTQALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
F AL+AC Q EIHA + G + N L+ Y + A ++F +
Sbjct: 44 FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
D V+W ++SG ++ G +EA+ ++ + V P L SVLS+C+ G+
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IHA ++ + I + NAV+
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVI 185
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q ++A+ + +M C ++ A+ C+ +A ++GL+IHA + G+ D+
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
I N+L++ Y I A F + D +TW ++SG ++ G H+EA+ +F +D
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG 542
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
VK N T VS LSA ++L K GK IHA ++ + + NA++
Sbjct: 543 VKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L Q+ + A+ LY +M Y + L +C+ A +G IHA K+G
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHG 173
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+IF+ N+++ Y+ A ++F + D VT+ T+ISG ++CG + A+++F
Sbjct: 174 FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + P+ T+ S+L+AC+SLG + G +H++ + ++ I++ ++LD
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL 288
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M +N +TF AL A + ++G +IHA VIK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + N+L+ Y A F+ + + V+W TII+ S+ G EA+D+
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDL 635
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + +KPN T + VL+ACS +G
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVG 662
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 31 PH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
PH NTL+ Q ++A+ ++ +M S + T + L AC+ QKG
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H+++ K G D ++ SLL YV D+ +A IFNS +VV W ++ +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++ ++FC + ++PN T +L C+ LG+ IH+ S++ E+++ +
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSG 384
Query: 204 AVLD 207
++D
Sbjct: 385 VLID 388
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q + + L+ +M N +T+ L+ C+ G +IH+ +K
Sbjct: 314 NLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVK 373
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ L+ Y + A ++ + DVV+WT++I+G + K+A+
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAA 433
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F CGI P+ L S +S C+ + + + G IHA
Sbjct: 434 FKEMQKCGI--WPDNIGLASAISGCAGINAMRQGLQIHA 470
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 69 FTQALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
F AL+AC Q EIHA + G + N L+ Y + A ++F +
Sbjct: 44 FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
D V+W ++SG ++ G +EA+ ++ + V P L SVLS+C+ G+
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IHA ++ + I + NAV+
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVI 185
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 15/166 (9%)
Query: 35 NTLLKLLTQSSTPQ---NAIPLYNKML----NCPSSYNHYTFTQALKACSLAHAHQKGLE 87
NT+++ + +S P A+ L+ ML N P + +T++ ALK+C Q+ +
Sbjct: 54 NTIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKP-DTFTYSFALKSCGRLKLTQQAKQ 112
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H + K G D++IQN+L+H Y + ++ A Q+F+ + DVV+WT++I+G
Sbjct: 113 LHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHL 172
Query: 148 HKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
EAI +F G+DV N T++SVL C+ G+ +G+ +H
Sbjct: 173 TVEAIQLFQRMLEVGVDV--NEATVISVLRGCADSGALSVGRKVHG 216
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
AI L+ +ML N T L+ C+ + A G ++H V + G + +L+
Sbjct: 175 EAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALI 234
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
H Y + SA ++F+ V+ DV WT +I GL+ G KEAI++F ++ VKP+
Sbjct: 235 HMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDER 294
Query: 166 TLVSVLSACSSLGSRKLG 183
T++ VLSA + G + G
Sbjct: 295 TIMVVLSAYRNAGLVREG 312
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 5/194 (2%)
Query: 18 LNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
+ H +P+ ++ TLL Q+S P A+ L+ KML + ++YT L A
Sbjct: 109 MESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNA 168
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
CS + + G ++HA++IKY D I NSL FY + + A + F + DV++W
Sbjct: 169 CSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 228
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T++IS G ++ F + +KPN TL SVLSAC + + LG IH+ S++
Sbjct: 229 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK 288
Query: 193 NLNENNIILDNAVL 206
++I++ N+++
Sbjct: 289 LGYGSSILIKNSIM 302
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 46 TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
+ A+ ++ K+ + +TF+ L CS A ++G +IH +IK G L D+ +
Sbjct: 352 SGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGT 411
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKP 162
+L+ Y I A + F + +++WT++I+G ++ G ++A+ +F + +KP
Sbjct: 412 ALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKP 471
Query: 163 NANTLVSVLSACSSLG 178
N T V VLSACS G
Sbjct: 472 NQVTFVGVLSACSHAG 487
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
++ + ML+ N YT T L AC + G +IH+ IK G+ I I+NS++
Sbjct: 243 RSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIM 302
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK--------CGFHKE---AIDMFCG 157
+ Y+ + A ++F + ++VTW +I+G +K HK A+ MF
Sbjct: 303 YLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQK 362
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +KP+ T SVLS CS+L + + G+ IH +++ ++++ A++
Sbjct: 363 LYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALV 414
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH H++K G D+F+ L++ Y + SAH++F+++ +V WTT+++G +
Sbjct: 80 IHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSH 139
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
A+ +F + P+ TL VL+ACSSL S + GK +HA+ ++
Sbjct: 140 PLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIK 187
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 34/225 (15%)
Query: 18 LNQIHAQII--KIPQPHIL----------------------------NTLLKLLTQSSTP 47
L QIHAQ++ IP+P+ L N +L+ L +
Sbjct: 49 LKQIHAQMLINSIPKPNFLLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKK 108
Query: 48 QN-AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
+ + LY K+ + N++T+ AC G H V K G D ++ +S
Sbjct: 109 YDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHS 168
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
L+ Y ++ A ++F+ + D+V+W ++ISG SK GF KEAI +F + +P+
Sbjct: 169 LITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPD 228
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
TLVSVL AC LG LG+ + L E N + +A++D
Sbjct: 229 EMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDM 273
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ + AI L+ +M + T L AC G + V++
Sbjct: 198 NSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLE 257
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ ++ ++L+ Y D+ SA ++F+S+ DVVTW II+G ++ G EAI +
Sbjct: 258 KKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVL 317
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F G+ P+ T++ VLSACS++G+ LGK + H+ ++++ + +A++D
Sbjct: 318 FNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDM 374
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI L+N M + T + L ACS A G + H +
Sbjct: 299 NAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASE 358
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G HD+++ ++L+ Y + A ++F S+ + V+W +IS L+ G +EA+ +
Sbjct: 359 KGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSL 418
Query: 155 FCGID-----VKPNANTLVSVLSACSSLGSRKLGKAI 186
F + V+PN T + VLSAC G G+ +
Sbjct: 419 FRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQL 455
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++++ +S + + Y+ ML + +F+ L++C+++ Q G H ++K G
Sbjct: 1 MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAIDM 154
+D+ +Q LL FY + A +F+++ + VTW T+IS +CG AI M
Sbjct: 61 FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + +VKP T+VS+LSAC+ LG+ +G+ IH + + +++L NA++D
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDM 177
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q AI ++ +M + T L AC+ A G IH ++
Sbjct: 102 NTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRT 161
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ + N+L+ Y + +A +F+ + ++ W +II GL G +EAI
Sbjct: 162 KRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAA 221
Query: 155 FCGID---VKPNANTLVSVLSACS-----SLGSRKLGKAIHAHSLR 192
F ++ +KP+ T V +LS CS S G R + + + L
Sbjct: 222 FIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLE 267
>gi|91806812|gb|ABE66133.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 230
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
KPT I +QI + P + N L++ + + P A Y +ML ++ TF
Sbjct: 62 KPTNLLGYAYGIFSQI-QNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITF 120
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+KA S G + H+ ++++G +D++++NSL+H Y I +A +IF + F
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF 180
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN 165
DVV+WT++++G KCG + A +MF D P+ N
Sbjct: 181 RDVVSWTSMVAGYCKCGMVENAREMF---DEMPHRN 213
>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
Length = 592
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 44 SSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+ Q A+ LY ++ + + + F+ AL AC+ ++GLEIH ++K G D+
Sbjct: 91 AGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACARLKCLEQGLEIHEQIVKRGIKQDV 150
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV--TWTTIISGLSKCGFHKEAIDMFCGID 159
+QN+L+ Y I A Q+F+ + DVV +W +I+G + G K+A+++F +D
Sbjct: 151 GLQNALVTMYAKCGRIDRAKQVFDRITHRDVVVISWNAMIAGFGQNGRPKQALELFRRMD 210
Query: 160 VK---PNANTLVSVLSACSSLGSRKLGKAI 186
++ P+ T SVL AC++L + LG+ I
Sbjct: 211 LEGLQPSRMTYCSVLDACANLTASSLGRII 240
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L+ C+ + + G +HA +I GH D F+ N L+ Y + A +F+S+
Sbjct: 15 YATILRKCARSRLLEDGRRVHARIIHSGHTRDRFLGNLLVQMYRDCGRLEDARAVFDSMP 74
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLG 183
+ +W IIS G +EA+ ++ + +++P+A S L+AC+ L + G
Sbjct: 75 LRNEFSWAIIISAYVGAGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACARLKCLEQG 134
Query: 184 KAIHAHSLRNLNENNIILDNAVL 206
IH ++ + ++ L NA++
Sbjct: 135 LEIHEQIVKRGIKQDVGLQNALV 157
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 4/144 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ P+ A+ L+ +M + T+ L AC+ A G I +
Sbjct: 187 NAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLG-RIICDGMD 245
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DI + NS+ + Y A Q F + + DVV+WT II+ ++ G+ EA+D+
Sbjct: 246 EALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYAQNGYSSEALDI 305
Query: 155 F---CGIDVKPNANTLVSVLSACS 175
F V+PN TL++ LSACS
Sbjct: 306 FRIMVQAGVEPNGITLINTLSACS 329
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 44/226 (19%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNC---PSSY-----NHYTFTQALKAC 76
+IP P H+ N ++K Q+ ++A+ +Y +ML C PS+ + +T+ LKAC
Sbjct: 67 QIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKAC 126
Query: 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--------- 127
A + G ++HAHV + G +QNSL+ Y D+ +A + F+ +
Sbjct: 127 GALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWN 186
Query: 128 --------------------VFPD--VVTWTTIISGLSKCGFHKEAIDMFCGIDV---KP 162
PD VV+WT ++SG + G A+++F + + +P
Sbjct: 187 TLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEP 246
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++V+VL AC+ LG+ +LG+ I+A+ ++ + + NA+++
Sbjct: 247 DDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEM 292
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 17/191 (8%)
Query: 4 NGLKSLKPTLSFKQLNQIHAQIIKIPQPHIL------------NTLLKLLTQSSTPQNAI 51
+G++ K +S+ L HA++ ++ + L L+ T A+
Sbjct: 175 DGMRE-KDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAV 233
Query: 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111
++ M + + L AC+ A + G I+A+ K+G L ++I N+L+ Y
Sbjct: 234 EVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMY 293
Query: 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTL 167
I A Q+F+ + DV++W+T I GL+ G +EA+ +F +D V PN T
Sbjct: 294 AKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITF 353
Query: 168 VSVLSACSSLG 178
V +LSACS G
Sbjct: 354 VGLLSACSHAG 364
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 67/260 (25%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
FK ++ +P+P++ N ++K + P AI Y KM+ + N +T+
Sbjct: 76 FKNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSL 135
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV------------------ 114
LKAC +A A ++G+++H HVIK G D+ I+++ + Y T+
Sbjct: 136 LKACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYATLGHMAAARRMLDEDGESDV 195
Query: 115 -------------KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
D+ SA ++F + V +W ++SGL+K G KEA ++F +
Sbjct: 196 ICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREK 255
Query: 159 -------------------------------DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++P L SVL+AC++LG+ G+ IH
Sbjct: 256 DEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIH 315
Query: 188 AHSLRNLNENNIILDNAVLD 207
A+ +N + +L A++D
Sbjct: 316 AYVKKNPMYLDAVLGTALVD 335
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++N M + + L AC+ A +G IHA+V K D + +L
Sbjct: 274 KEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTAL 333
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y + A +F ++ +V TW +I GL+ G ++AI +F + V+ N
Sbjct: 334 VDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNE 393
Query: 165 NTLVSVLSACSSLG 178
T V +L+AC+ G
Sbjct: 394 ITFVGLLNACAHKG 407
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVT--VKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IHA +++ GH D ++ +LL Y K+I A +F+ V P+V + II
Sbjct: 47 QIHAVILRSGHFEDHYVSGTLLKCYANPHFKNIDLAFTVFDHVPKPNVFVYNIIIKA--- 103
Query: 145 CGFHKEAIDMFC------GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
C + E C + +PN T S+L AC + K G +H H ++
Sbjct: 104 CLDNDEPFKAICFYYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHVIK 157
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ +I N L++ + + A+ LY +M + +++TF LKAC+ A +
Sbjct: 135 RIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEH 194
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVTWTTIISG 141
G EIH HV++ G D+F+ +L+ Y + SA ++F+ ++ D VV+W +I+G
Sbjct: 195 GREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITG 254
Query: 142 LSKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ G EA+D+F ++ KP+ T V VLSACS G + G +R+
Sbjct: 255 YAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRD 308
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L++C A + G ++HA V G D I L++ Y + SA +F+ +
Sbjct: 78 YASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIP 137
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
++ W +I G + G ++ A+ ++ + + P+ T VL AC++L + + G+
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH H ++ E ++ + A++D
Sbjct: 198 IHEHVVQTGWEKDVFVGAALID 219
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 19/203 (9%)
Query: 16 KQLNQIHAQIIKIPQPH---ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQ 71
K +Q+ Q I H N L++ ++S TP AI +YN + + + YT+
Sbjct: 20 KVFDQVLTQTITTAFIHATPTWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPA 79
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
LKAC + KG E+HAHV K G D+++ N+LLH Y + + A ++F+ + D
Sbjct: 80 MLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRD 139
Query: 132 VVTWTTIISGLSKCGFHKEAID--------MFCGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ +W T++ ++ A++ M+ GI + ++V V SAC +G + G
Sbjct: 140 LASWNTLLG-----AYNDNAVEVLVLFKRMMYEGIG--GDHISMVIVFSACGKIGGTEFG 192
Query: 184 KAIHAHSLRNLNENNIILDNAVL 206
K +H + ++ + L NA+L
Sbjct: 193 KEVHGYVIKVGIRPALSLSNALL 215
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ P+ AI L+ KM N + T L AC+ Q G H +I+
Sbjct: 275 NSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQ 334
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F+ +L+ Y + A F + DV TWTT I GL+ G +A+ +
Sbjct: 335 NNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSL 394
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLG 183
F ++ +KPN T VSVL ACS G K G
Sbjct: 395 FTEMEKQGIKPNQATFVSVLMACSRSGLVKEG 426
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 37/209 (17%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL ++ + L+ +M+ +H + AC + G E+H +VIK
Sbjct: 144 NTLLGAYNDNAV--EVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIK 201
Query: 95 YGHLHDIFIQNSLLHFY----------------VTVKDIFS----------------AHQ 122
G + + N+LL Y ++D+ S A
Sbjct: 202 VGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARG 261
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
IF+ + D+V+W ++I K K+AI++F ++ V+P+ T+VSVL+AC+SL
Sbjct: 262 IFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLAD 321
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ G+ H ++N ++ + A++D
Sbjct: 322 LQNGRLAHRFIIQNNPRQDLFVGTALIDM 350
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 99/179 (55%), Gaps = 8/179 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++K T A+ Y++M+ + +T+ +K+ + + ++G +IHA VIK
Sbjct: 99 NVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIK 158
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+++ NSL+ Y+ + + A ++F + D+V+W ++ISG G ++ +
Sbjct: 159 LGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLML 218
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
F CG KP+ + +S L ACS + S K+GK IH H++R+ + ++++ ++LD
Sbjct: 219 FKEMLKCGF--KPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILD 275
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ +A+ L+ ++ + + T L A + + + +G EIHA+++K
Sbjct: 400 NSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVK 459
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + I NSL+H Y D+ A + FN ++ DVV+W +II + GF + ++ +
Sbjct: 460 SRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWL 519
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + V PN +T S+L+ACS G
Sbjct: 520 FSEMIASRVNPNKSTFASLLAACSISG 546
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSL 107
+++ L+ +ML C + ++ AL ACS ++ + G EIH H ++ D+ + S+
Sbjct: 214 SSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSI 273
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPN 163
L Y ++ A +IFN ++ ++V W +I ++ G +A F + ++P+
Sbjct: 274 LDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPD 333
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T +++L A + L G+ IH +++R +++L+ A++D
Sbjct: 334 VITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALID 373
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
A A +G IH + ++ G L + ++ +L+ Y + SA IF+ + +V++W +I
Sbjct: 343 ASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSI 402
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+ + G + A+++F + + P++ T+ S+L A + S G+ IHA+ +++
Sbjct: 403 IAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRY 462
Query: 196 ENNIILDNAVL 206
+N I+ N+++
Sbjct: 463 WSNTIILNSLV 473
Score = 39.7 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A Q+F+ + D W +I G + CG + EA+ + + VK + T V+ + +
Sbjct: 83 ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142
Query: 177 LGSRKLGKAIHAHSLR 192
+ S + GK IHA ++
Sbjct: 143 ISSLEEGKKIHAMVIK 158
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 34/217 (15%)
Query: 9 LKPTLSFKQLNQIHAQII--KIPQPHIL----------------------------NTLL 38
LK +S QL QI AQ++ + +P+ L N ++
Sbjct: 40 LKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMI 99
Query: 39 KLLTQSSTP-QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ LT + + A+ LY +M + +T+ AC+ G +H+ + K G
Sbjct: 100 RGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGL 159
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
D+ I +SL+ Y + A ++F+ + D V+W ++ISG S+ G+ K+A+D+F
Sbjct: 160 ERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRK 219
Query: 158 ID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
++ +P+ TLVS+L ACS LG + G+ + ++
Sbjct: 220 MEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 256
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +++ ++A+ L+ KM + T L ACS + G + I
Sbjct: 198 NSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAIT 257
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
F+ + L+ Y D+ SA ++FN ++ D V WT +I+ S+ G EA +
Sbjct: 258 KKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKL 317
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ V P+A TL +VLSAC S+G+ +LGK I H+ ++NI + ++D
Sbjct: 318 FFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVD 373
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Query: 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
++ Q+IK + ++ + +Q+ A L+ +M S + T + L AC
Sbjct: 284 RRVFNQMIKKDRV-AWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 342
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
A + G +I H + H+I++ L+ Y + A ++F ++ + TW +
Sbjct: 343 VGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAM 402
Query: 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLG 178
I+ + G KEA+ +F + V P+ T + VLSAC G
Sbjct: 403 ITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAG 442
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +S + A L+N++ + N +TF L S A KG +IH+ ++K
Sbjct: 320 NTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILK 379
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ I N+L+ Y +I +A Q+FN + +V++WT++I+G +K GF A++
Sbjct: 380 SGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALET 439
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + V PN T ++VLSACS +G
Sbjct: 440 FHKMLEAGVSPNEVTYIAVLSACSHVG 466
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLL 108
AI + ML C N Y FT +ACS G I ++K G+ D+ + +L+
Sbjct: 26 AISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALI 85
Query: 109 HFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNA 164
+V D+ SA+++F+ + +VVTWT +I+ + GF ++A+D+F + + P+
Sbjct: 86 DMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDR 145
Query: 165 NTLVSVLSACSSLGSRKLGKAIH 187
TL V+SAC+ +G LG+ H
Sbjct: 146 FTLSGVVSACAEMGLLSLGRQFH 168
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ +M+ NH+TF+ LKAC+ G +++A V+K + NSL
Sbjct: 232 REAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSL 291
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y ++ +A + F+ + ++V++ TI++ +K +EA ++F I+ NA
Sbjct: 292 ISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNA 351
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S+LS SS+G+ G+ IH+ L++ ++N+ + NA++
Sbjct: 352 FTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALI 393
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ Q ++A+ L+ M+ + +T + + AC+ G + H V+K G
Sbjct: 116 MITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSG 175
Query: 97 HLHDIFIQNSLLHFY---VTVKDIFSAHQIFNSVVFPDVVTWTTIISG-LSKCGFHKEAI 152
D+ + SL+ Y V + A ++F+ + +V++WT II+G + G +EAI
Sbjct: 176 LDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAI 235
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
++F + VKPN T SVL AC++L LG+ ++A
Sbjct: 236 ELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ ++++ ++ L+Q+S AI + M C + F+ A++AC+ + + G
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H +K+G ++F+ ++L Y +F A ++F + D V+WT +I G SK
Sbjct: 61 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G +EA+ F + +V + + L S L AC +L + K G+++H+ ++ E++I +
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180
Query: 203 NAVLD 207
NA+ D
Sbjct: 181 NALTD 185
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +TF+ +KAC+ A ++G ++HA V+K D F+ + L+ Y + A Q F
Sbjct: 243 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 302
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ + P + W +++S + G K+AI +F + VKPNA T +S+L+ CS G
Sbjct: 303 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 359
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ + KM++ + + + L AC A + G +H+ V+K G DIF+ N+L
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 183
Query: 108 LHFYVTVKDIFSAHQIFN-SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
Y D+ SA +F +VV++T +I G + ++ + +F + ++PN
Sbjct: 184 TDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPN 243
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
T S++ AC++ + + G +HA ++ N +E+ +
Sbjct: 244 EFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFV 281
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++ +Q+ A+ ++ +M+ N +TF L +C A
Sbjct: 112 EMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGL 171
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++K+ + IF+ +SLL Y I A +IF + DVV+ T II+G ++
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA++MF + + PN T S+L+A S L GK H H LR +L
Sbjct: 232 LGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL 291
Query: 202 DNAVLD 207
N+++D
Sbjct: 292 QNSLID 297
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 8/198 (4%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKL--LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F + IH P ++L T+L + L + Q A+ L ML ++ Y
Sbjct: 2 FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEAL-LEMAMLGPEMGFHGYD--AL 58
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC A + G +HAH+IK +L +++ LL FY + A ++ + + +V
Sbjct: 59 LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT +IS S+ G EA+ +F + D KPN T +VL++C LGK IH
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178
Query: 190 SLRNLNENNIILDNAVLD 207
++ +++I + +++LD
Sbjct: 179 IVKWNYDSHIFVGSSLLD 196
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ +++++ + S N+ T+ L A S G + H HV++ +QNSL
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
+ Y ++ A ++F+++ ++W ++ G SK G +E +++F + VKP+
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Query: 164 ANTLVSVLSACS 175
A TL++VLS CS
Sbjct: 356 AVTLLAVLSGCS 367
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 60/204 (29%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNH 66
S+ +LS+ QL + + P N L++ + SS+P I YN+ML + S +
Sbjct: 50 SVNGSLSYAQL--LFDRFDSDPSTSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDI 107
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+TF+ ALKAC K LE+H VI+ G L D + +L+ Y + A ++F+
Sbjct: 108 FTFSFALKACERIRLIPKCLELHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDE 167
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ D+V+W +IS S G H +A M+ + V +A T+V++LS+C+ + + +G
Sbjct: 168 MPVRDLVSWNAMISCFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMG 227
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+H + E+++ + NA++D
Sbjct: 228 VMLHRIACDIRCESSVFVCNALID 251
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + A +Y++M N + YT L +C+ A G+ +H
Sbjct: 177 NAMISCFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACD 236
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+F+ N+L+ Y + +A +F + DV+TW ++I G G EAI
Sbjct: 237 IRCESSVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISF 296
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F V+PNA T + +L CS G K G
Sbjct: 297 FRKMVASGVRPNAVTFLGLLLGCSHQGLVKEG 328
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ + +M C ++ A+ C+ A ++GL+IHA V G+ D+ I N+L
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNAL 487
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
++ Y I A F + D +TW ++SG ++ G H+EA+ +F +D VK N
Sbjct: 488 VNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T VS LSA ++L K GK IHA ++ + + NA++
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L Q+ + A+ LY +M Y + L +C+ A +G +HA K G
Sbjct: 114 MLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQG 173
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ F+ N+L+ Y+ A ++F + D VT+ T+ISG ++C + A+++F
Sbjct: 174 FCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFE 233
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + P+ T+ S+L+AC+SLG + G +H++ + ++ I++ ++LD
Sbjct: 234 EMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDL 288
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 31 PH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
PH NTL+ Q + ++A+ ++ +M + S + T + L AC+ QKG
Sbjct: 205 PHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H+++ K G D ++ SLL YV D+ +A IFN +VV W I+ +
Sbjct: 265 QLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQIN 324
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++ ++FC + ++PN T +L C+ G LG+ IH+ S++ E+++ +
Sbjct: 325 DLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSG 384
Query: 204 AVLD 207
++D
Sbjct: 385 VLID 388
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M +N +TF AL A + ++G +IHA VIK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + N+L+ Y A F+ + + V+W TII+ S+ G EA+D
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDF 635
Query: 155 F 155
F
Sbjct: 636 F 636
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q + + L+ +M N +T+ L+ C+ G +IH+ +K
Sbjct: 314 NLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVK 373
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ L+ Y + A ++ + DVV+WT++I+G + + K+A+
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAA 433
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F CGI P+ L S +S C+ + + + G IHA + ++ + NA+++
Sbjct: 434 FKEMQKCGI--WPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNL 490
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 69 FTQALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
F AL+AC Q EIHA I G D + N L+ Y + A ++F +
Sbjct: 44 FACALRACRGNGRRWQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEEL 103
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
D V+W ++SG ++ G +EA+ ++ + V P L SVLS+C+ G+
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
++HA + + + NA++
Sbjct: 164 SVHAQGYKQGFCSETFVGNALI 185
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 34/217 (15%)
Query: 9 LKPTLSFKQLNQIHAQII--KIPQPHIL----------------------------NTLL 38
LK +S QL QI AQ++ + +P+ L N ++
Sbjct: 44 LKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMI 103
Query: 39 KLLTQSSTP-QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ LT + + A+ LY +M + +T+ AC+ G +H+ + K G
Sbjct: 104 RGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGL 163
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
D+ I +SL+ Y + A ++F+ + D V+W ++ISG S+ G+ K+A+D+F
Sbjct: 164 ERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRK 223
Query: 158 ID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
++ +P+ TLVS+L ACS LG + G+ + ++
Sbjct: 224 MEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 260
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +++ ++A+ L+ KM + T L ACS + G + I
Sbjct: 202 NSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAIT 261
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
F+ + L+ Y D+ SA ++FN ++ D V WT +I+ S+ G EA +
Sbjct: 262 KKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKL 321
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ V P+A TL +VLSAC S+G+ +LGK I H+ ++NI + ++D
Sbjct: 322 FFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVD 377
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Query: 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
++ Q+IK + ++ + +Q+ A L+ +M S + T + L AC
Sbjct: 288 RRVFNQMIKKDRV-AWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 346
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
A + G +I H + H+I++ L+ Y + A ++F ++ + TW +
Sbjct: 347 VGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAM 406
Query: 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLG 178
I+ + G KEA+ +F + V P+ T + VLSAC G
Sbjct: 407 ITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAG 446
>gi|297736881|emb|CBI26082.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 109/202 (53%), Gaps = 6/202 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ ++ N ++ +P++++ +L+ + P++A+ ++ KML N +TF
Sbjct: 73 VRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRPKSALLIFCKMLESWVLPNAFTFA 132
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ ACS+ + G +IH+HV +G ++ + +SL+ Y ++ A ++F+ + +
Sbjct: 133 TVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYR 192
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAI 186
+VV+WT++I+ + + A+ +F + PN L SV++AC+SLG GK
Sbjct: 193 NVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVA 252
Query: 187 HAHSLRNLNENNIILDNAVLDF 208
HA +R +E+N ++ +A++D
Sbjct: 253 HAAVIRRGHESNDVVASALVDM 274
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +V+K G L+D F N L++ YV ++ A Q+F + P+V+++T++++G K G
Sbjct: 50 HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
K A+ +FC + V PNA T +V++ACS L + G+ IH+H
Sbjct: 110 KSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIHSH 153
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++ Q++ + A+ L+ + P SS NH+ + AC+ G HA VI+
Sbjct: 199 SMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIR 258
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + ++L+ Y I + ++F + P V+ +T++I G +K G K ++D+
Sbjct: 259 RGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDI 318
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KPN T V VL ACS G
Sbjct: 319 FKEMLDRRIKPNDVTFVGVLHACSHSG 345
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ Q S A+ LY M + T T L+AC+ + G + H HV
Sbjct: 451 VWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHV 510
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+ D+ + N+LL Y + A IFN + DV++W+T+I+GL++ GF EA+
Sbjct: 511 LKFDQ--DLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEAL 568
Query: 153 DMFCGIDV---KPNANTLVSVLSACSSLG 178
++F + V KPN T++ VL ACS G
Sbjct: 569 NLFESMKVQGPKPNHITILGVLFACSHAG 597
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/200 (25%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F L + K+P+ ++++ T++ + + A+ L M N +TF+
Sbjct: 331 VKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFS 390
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L+AC + + ++H+ ++K G D+F++++L+ Y + ++ A ++F ++
Sbjct: 391 SVLRACERLYDLK---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTG 447
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
D V W +II+ ++ EA+ ++ + + +TL SVL AC+SL +LG+ H
Sbjct: 448 DSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAH 507
Query: 188 AHSLRNLNENNIILDNAVLD 207
H L+ + ++IL+NA+LD
Sbjct: 508 VHVLK--FDQDLILNNALLD 525
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 68 TFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T+++ +K C LAH A ++G +H H+ G+ F+ N L++ YV + A +F+
Sbjct: 287 TYSELIKCC-LAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDK 345
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ +VV+WTT+IS S + A+ + + V PN T SVL AC L
Sbjct: 346 MPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL--- 402
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
K +H+ ++ E+++ + +A++D
Sbjct: 403 KQLHSWIMKVGLESDVFVRSALID 426
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 37/223 (16%)
Query: 20 QIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP--------SSYNH-- 66
Q+H I++ P +I+NTLLKL + A L++K N S Y H
Sbjct: 65 QVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRG 124
Query: 67 ---------------------YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
+TF L ACS A G E+H V++ G ++ + N
Sbjct: 125 LGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGN 184
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
+L+ Y + A ++F+++ D V+WTT+ ++ G+ +E++ + + V+P
Sbjct: 185 ALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRP 244
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ T ++VLSAC SL + + GK IHA + + + +++ + A+
Sbjct: 245 SRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTAL 287
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
S + Y + + L++C A G ++H H++++G +++I N+LL YV + A
Sbjct: 40 SQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEAR 99
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
++F+ VV+W +ISG + G +EA ++F + ++P+ T VS+LSACSS
Sbjct: 100 RLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ G+ +H + NN + NA++
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALI 187
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL +S Q ++ Y+ ML + T+ L AC A +KG +IHA +++
Sbjct: 216 TLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVES 275
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
H D+ + +L Y+ + A ++F + DV+ W T+I GL G +EA MF
Sbjct: 276 EHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMF 335
Query: 156 ------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C V P+ T +++LSAC+ G GK IHA ++++ +++ NA+++
Sbjct: 336 HRMLKEC---VAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALIN 390
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L S + A ++++ML + + T+ L AC+ G EIHA +K
Sbjct: 316 NTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK 375
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+ N+L++ Y + A Q+F+ + DVV+WT ++ G + CG E+
Sbjct: 376 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFST 435
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + V+ N T + VL ACS+ + K GK IHA ++
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVK 476
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113
+ KML N T+ LKACS A + G EIHA V+K G D+ + N+L+ Y
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFK 495
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 170
+ A ++ + DVVTW T+I GL++ G EA+ F + +++PNA T V+V
Sbjct: 496 CGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNV 555
Query: 171 LSAC 174
+SAC
Sbjct: 556 MSAC 559
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++++ T S +A+ L+ +ML + ++YT+ +KAC + G IHA +
Sbjct: 91 NAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTV 150
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI- 152
G D F+QNSL+ Y+ ++ A ++F+ + +V+W T+I+G K G KEA+
Sbjct: 151 MSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALM 210
Query: 153 --DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNENNIILDNAVLD 207
D G ++P+ T+VSVL CS L ++G+ +HA ++NL E +I + N++LD
Sbjct: 211 VFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLD 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ + A+ +++ M+ + T L CS + G +HA V
Sbjct: 193 NTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEV 252
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DI + NSLL Y ++ A IF + DVV+WTT+++G G + A+ +
Sbjct: 253 KNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-L 311
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C + VKPN TL SVLSAC+SL S K G+ +H ++R E+ +I++ A++D
Sbjct: 312 LCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALID 368
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + AI L+ +ML N T L A + Q+ +H ++I+
Sbjct: 395 NAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIR 454
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAI 152
G L I + L+ Y + SAH IFN + D++TW+ II+G G + AI
Sbjct: 455 SGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAI 514
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + VKPN T S+L ACS G
Sbjct: 515 SLFDQMVQSGVKPNEITFTSILHACSHAG 543
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ ++ + G +H I+ ++ ++ +L+ Y ++ + ++F
Sbjct: 324 NFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVF 383
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ W IISG G ++AI++F + V PN TL S+L A + L +
Sbjct: 384 SKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQ 443
Query: 182 LGKAIHAHSLRN 193
+ +H + +R+
Sbjct: 444 QARNMHGYLIRS 455
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++++ T S +A+ L+ +ML + ++YT+ +KAC + G IHA +
Sbjct: 91 NAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTV 150
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI- 152
G D F+QNSL+ Y+ ++ A ++F+ + +V+W T+I+G K G KEA+
Sbjct: 151 MSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALM 210
Query: 153 --DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNENNIILDNAVLD 207
D G ++P+ T+VSVL CS L ++G+ +HA ++NL E +I + N++LD
Sbjct: 211 VFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLD 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ + A+ +++ M+ + T L CS + G +HA V
Sbjct: 193 NTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEV 252
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DI + NSLL Y ++ A IF + DVV+WTT+++G G + A+ +
Sbjct: 253 KNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-L 311
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C + VKPN TL SVLSAC+SL S K G+ +H ++R E+ +I++ A++D
Sbjct: 312 LCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALID 368
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + AI L+ +ML N T L A + Q+ +H ++I+
Sbjct: 395 NAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIR 454
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAI 152
G L I + L+ Y + SAH IFN + D++TW+ II+G G + AI
Sbjct: 455 SGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAI 514
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + VKPN T S+L ACS G
Sbjct: 515 SLFDQMVQSGVKPNEITFTSILHACSHAG 543
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC+ ++ + G +H I+ ++ ++ +L+ Y ++ + ++F
Sbjct: 324 NFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVF 383
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ W IISG G ++AI++F + V PN TL S+L A + L +
Sbjct: 384 SKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQ 443
Query: 182 LGKAIHAHSLRN 193
+ +H + +R+
Sbjct: 444 QARNMHGYLIRS 455
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 3/174 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ +Q++ P++A+ L+ +ML NH+T + LKA H G ++HA +KYG
Sbjct: 160 LIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYG 219
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ +++ ++L+ Y + +A F+ + V+W +ISG ++ G + A+ +
Sbjct: 220 YQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLW 279
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + +P T SV SAC+S+G+ + GK +HAH +++ + + N +LD
Sbjct: 280 KMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLD 333
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + ++A+ L KM H+T++ AC+ A ++G +HAH+IK
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIK 318
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G FI N+LL Y I A ++F+ +V PDVV+W T+++G ++ G KE +D
Sbjct: 319 SGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F I ++PN + + VL+ACS G
Sbjct: 379 FEQMLRIGIEPNEISFLCVLTACSHSG 405
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQ 122
YN Y+ + LK C+ ++G +HAH++ L + + +QN +++ Y + A +
Sbjct: 87 YNLYS--KLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGS 179
+F+ + D+VTWT +I+G S+ ++A+ +F + ++PN TL S+L A S
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHG 204
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
G +HA L+ ++++ + +A++D
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVD 232
>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
Length = 841
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +ML ++ T A++AC+ + + G +IH IK+ + D++I N+LL+
Sbjct: 246 ALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLN 305
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + S+HQ+F SV D W ++IS + G H+EA+D+F + VK + T
Sbjct: 306 MYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERT 365
Query: 167 LVSVLSACSSLGSRKL-GKAIHAHSLRNLNENNIILDNAVL 206
+V +LS C L S L GK++HAH +++ + L NA+L
Sbjct: 366 VVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALL 406
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 38/232 (16%)
Query: 14 SFKQLNQIHAQIIK---IPQPHILNTLLKLLTQS-----------STPQNAIPLYNKMLN 59
S K QIH IK + +ILN LL + + + S P PL+N M++
Sbjct: 277 SLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMIS 336
Query: 60 CPSSY--------------------NHYTFTQALKACS-LAHAHQKGLEIHAHVIKYGHL 98
+++ + T L C LA KG +HAHVIK G
Sbjct: 337 AYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMR 396
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
D + N+LL Y + + S +IF+ + D+++W T+I L++ +A ++F +
Sbjct: 397 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 456
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++KPN+ T++S+L+AC + G++IH + +++ E N L A+ D
Sbjct: 457 RESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALAD 508
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+I P N+++K Q + Y +M + N+ T LKAC+ +A ++G
Sbjct: 20 IQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 79
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH + + D+ + +++ FY + A +F+++ DVV W ++ G
Sbjct: 80 KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 139
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G ++EA+ + + +++PN+ T+V++L AC +LG+ +H + LRN
Sbjct: 140 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRN 190
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 123
N T L AC A + G +H + ++ G + + +L+ FY+ D+ +
Sbjct: 160 NSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLL 218
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ +V ++V+W +ISG G + +A+++F + +VK + T++ + AC+ LGS
Sbjct: 219 FDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSL 278
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
KLGK IH +++ ++ + NA+L+
Sbjct: 279 KLGKQIHQLAIKFEFVEDLYILNALLN 305
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L +++ A L+ +M N YT L AC G IH +V+K
Sbjct: 434 NTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK 493
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + ++ +L Y+ D +A +F D+++W +I
Sbjct: 494 HSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIX-------------- 539
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+PN+ T+++VLS+ + L + G+++HA+ R
Sbjct: 540 ----KAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTR 573
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH--DIFIQ 104
P + +N M+ + N T L + + +G +HA+V + G D+ +
Sbjct: 527 PDRDLISWNAMIX-KAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLA 585
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
N+ + Y + SA IF ++ ++++W +I+G G +A+ F + +
Sbjct: 586 NAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFR 645
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
PN T VSVLSACS G ++G + +++ N
Sbjct: 646 PNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFN 679
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 34/178 (19%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I+ N ++ + +A+ +++ML N TF L ACS
Sbjct: 608 LPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACS-------- 659
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
H FI+ L F+ V+D FN V P++V ++ I+ L++
Sbjct: 660 -------------HSGFIEMGLQLFHSMVQD-------FN--VTPELVHYSCIVDLLARG 697
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH--SLRNLNENNIIL 201
G EA + + ++P+A+ ++LS+C + K K I L +N N +L
Sbjct: 698 GCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVL 755
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q+ + A+ +Y +M + ++AC+ + GL IH ++I+
Sbjct: 176 TMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRK 235
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D+ +Q SL+ Y + A +F +++ +V++W+ +ISG ++ GF A+ +
Sbjct: 236 DIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLV 295
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ KP++ +LVSVL ACS +G KLGK++H + +R L+ + + AV+D
Sbjct: 296 VDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLH-FDCVSSTAVID 349
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 115/215 (53%), Gaps = 8/215 (3%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHA--QII-KIPQPHI--LNTLLKLLTQSSTPQNAIPLYN 55
+F +G + K S+ +L I + Q+ K PQ + N ++ ++ A+ LY+
Sbjct: 35 IFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYH 94
Query: 56 KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
+M + + T+T LKAC+ + + G E + G+ D+F+ ++L+ Y
Sbjct: 95 RMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCG 154
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLS 172
+ A ++F+ + D+V WTT+I+GL++ G +EA+D++ + V+ + ++ ++
Sbjct: 155 KMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQ 214
Query: 173 ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
AC++LG K+G +IH + +R ++I+ +++D
Sbjct: 215 ACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVD 249
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L+ Q+ NA+ L M + + + L ACS + G +H ++++
Sbjct: 276 SALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVR 335
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
H D +++ Y + A +F+ + F D ++W II+ G +EA+ +
Sbjct: 336 RLHF-DCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSL 394
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + +VKP+ T S+LSA S G + G+
Sbjct: 395 FLQMRETNVKPDHATFASLLSAFSHSGLVEKGR 427
>gi|334185681|ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g28640
gi|9294278|dbj|BAB02180.1| unnamed protein product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 16/195 (8%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN------CPSSYN-HYTFTQALKACSL 78
I+IP + +T++++ ++SS P + + M+ PS H+ LKAC
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFF 132
Query: 79 AHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ G +IH V+K G L D +Q +L YV K + A ++F+ + PDVV W
Sbjct: 133 S----VGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDV 188
Query: 138 IISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAH-SLRN 193
+++G +CG E +++F + VK P+ ++ + L+AC+ +G+ GK IH ++
Sbjct: 189 LMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKS 248
Query: 194 LNENNIILDNAVLDF 208
E+++ + A++D
Sbjct: 249 WIESDVFVGTALVDM 263
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IPQP ++ + L+ + + ++ +ML + ++ T AL AC+ A +
Sbjct: 177 EIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQ 236
Query: 85 GLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IH V K + D+F+ +L+ Y I +A ++F + +V +W +I G +
Sbjct: 237 GKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYA 296
Query: 144 KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAI 186
G+ K+A+ ++ +KP++ L+ VL+AC+ G + G+++
Sbjct: 297 AYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSM 343
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P ++ N +++ + AI LY+ ML+ N YT+ LKACS A +
Sbjct: 68 EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+EIH+H +G D+F+ +L+ FY + A ++F+S+ DVV W +I+G S
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 177
G +A+ + + + PN++T+V VL C L
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL 223
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L+AC + + + +IH H +K D + + L Y++ + A ++F+ +
Sbjct: 11 YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKA 185
P V+ W II + G AID++ + V+PN T VL ACS L + + G
Sbjct: 71 NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH+H+ E+++ + A++DF
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDF 153
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS A Q G H ++I G D I N+L+ Y I A ++FN +
Sbjct: 275 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 334
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
D+V+W +I G G EA+ +F + +KP+ T + +LS+CS G
Sbjct: 335 DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 388
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTL 167
T + + A +IF+ + + V+W+ +I G KEA+D+F GID P+ T+
Sbjct: 219 TCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGID--PDLTTM 276
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ VL ACS L + + G H + + + ++ NA++D
Sbjct: 277 LGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 316
>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Vitis vinifera]
Length = 606
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 109/202 (53%), Gaps = 6/202 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ ++ N ++ +P++++ +L+ + P++A+ ++ KML N +TF
Sbjct: 73 VRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRPKSALLIFCKMLESWVLPNAFTFA 132
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ ACS+ + G +IH+HV +G ++ + +SL+ Y ++ A ++F+ + +
Sbjct: 133 TVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYR 192
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAI 186
+VV+WT++I+ + + A+ +F + PN L SV++AC+SLG GK
Sbjct: 193 NVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVA 252
Query: 187 HAHSLRNLNENNIILDNAVLDF 208
HA +R +E+N ++ +A++D
Sbjct: 253 HAAVIRRGHESNDVVASALVDM 274
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +V+K G L+D F N L++ YV ++ A Q+F + P+V+++T++++G K G
Sbjct: 50 HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
K A+ +FC + V PNA T +V++ACS L + G+ IH+H + N+++ +++
Sbjct: 110 KSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSL 169
Query: 206 LDF 208
+D
Sbjct: 170 IDM 172
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++ Q++ + A+ L+ + P SS NH+ + AC+ G HA VI+
Sbjct: 199 SMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIR 258
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + ++L+ Y I + ++F + P V+ +T++I G +K G K ++D+
Sbjct: 259 RGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDI 318
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KPN T V VL ACS G
Sbjct: 319 FKEMLDRRIKPNDVTFVGVLHACSHSG 345
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N +++ +S PQ + LY +ML ++YT++ K C+ G EI V+
Sbjct: 122 NAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVL 181
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+++ N ++H V+V + AH++F+ D+V+W ++I+G + +EA+
Sbjct: 182 KMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMG 241
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ + VKP+ T++ V+SAC+ L S KLG+ IH + + I L NA++D
Sbjct: 242 IYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMD 298
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 38/205 (18%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + P+ A+ +Y +M+ + T + AC+ + + G EIH ++ +
Sbjct: 224 NSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEE 283
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-------- 146
G I + N+L+ YV D+ + +F+++ VV+WTT+I G +K G
Sbjct: 284 SGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKL 343
Query: 147 FHK-----------------------EAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
FH EA+++F + ++KP+ T++ LSACS LG+
Sbjct: 344 FHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGAL 403
Query: 181 KLGKAIHAHSLRNLNENNIILDNAV 205
G H + + ++N+ LD A+
Sbjct: 404 DTGMWTHNY----IKKHNLSLDVAL 424
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ N ++ Q++ A+ L+ +M + T L ACS A G
Sbjct: 347 MPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTG 406
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ H ++ K+ D+ + +L+ Y ++ A Q+FN + + +TWT II GL+
Sbjct: 407 MWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALY 466
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G +AI F + + P+ T + VL+AC G + G+
Sbjct: 467 GNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGR 508
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ +A+ L+ +M + + T L AC G I V++
Sbjct: 196 NSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVE 255
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ ++L+ Y D+ SA ++F+ +V DVVTW +I+G ++ G EAI +
Sbjct: 256 NEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIIL 315
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F G+ V P+ TLV VLSAC+S+G+ GK + ++ +N+I + A++D
Sbjct: 316 FSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALID 371
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 34/235 (14%)
Query: 6 LKSLKPTLSFKQLNQIHAQII----------------------------KIPQP--HILN 35
L LK S K L QIH Q+I +IP P + N
Sbjct: 35 LSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFNNASLLFSQIPYPNEYAFN 94
Query: 36 TLLKLLTQSSTPQN-AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++ LT + N I Y +M + N++T+ AC+ G H+ V+K
Sbjct: 95 IMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLK 154
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D +++SL+ Y ++ A ++F+ + D+V+W ++ISG S+ G+ +A+ +
Sbjct: 155 SGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGL 214
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + +P+ TLVS+L AC LG LG I + N + N + +A++
Sbjct: 215 FGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALI 269
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI L++ M + + T L AC+ A G + + +
Sbjct: 297 NAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASE 356
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +DI++ +L+ Y + A ++F + + V+W +IS L+ G +E++ +
Sbjct: 357 RGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSL 416
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F G V+PN + + VLSAC G G+ +
Sbjct: 417 FKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQL 453
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ +QSS P+ ++ Y +M + + +T L ACS + + G E+H +I+
Sbjct: 463 NALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIR 522
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D F+ SLL Y+ ++ +AH +F+++ +V+W T+++G + GF + A+ +
Sbjct: 523 NRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSL 582
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + V+P +++SV ACS L S +LG+ H ++L+ L E+N + +V+D
Sbjct: 583 FRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVID 638
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 21/209 (10%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
+S+ L K L Q +A I + + + +L++ + T +P ++
Sbjct: 137 RSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLP------------DN 184
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+TF +KAC+ Q GL +H V+K + D+F+ N+L+ FY T + A ++F
Sbjct: 185 FTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKI 244
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCG--------IDVKPNANTLVSVLSACSSLG 178
+ ++V+W ++I S G +E + G I P+ TL +VL C+
Sbjct: 245 MPERNLVSWNSMIRVFSDNGLSEECF-LLLGQMMEKDDEIAFTPDVATLATVLPVCARDR 303
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+GK +H +++ + ++++NA++D
Sbjct: 304 EIGVGKGVHGLAMKLSLDKEVVVNNALMD 332
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 87 EIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E+H + +K +H+ + N+ + Y + AH++F S+ V +W +I G S+
Sbjct: 413 ELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQS 472
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ ++D + + + P+ T+ S+LSACS + S KLGK +H +RN E +
Sbjct: 473 SDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERD 528
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ P+ A+ L+ +M+ + ACSL + + G E H + +K
Sbjct: 564 NTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALK 623
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ FI S++ Y + + ++FN + V +W ++ G G KEAI +
Sbjct: 624 CLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKL 683
Query: 155 FCGIDVK---PNANTLVSVLSACSSLG 178
F + P+ T + VL+AC+ G
Sbjct: 684 FEEMQRTGHCPDELTFLGVLTACNHSG 710
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L C+ G +H +K ++ + N+L+ Y I A IF
Sbjct: 291 TLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLN 350
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKL 182
+VV+W T++ G S G + D+ G D++ + T+++ + C
Sbjct: 351 NNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPN 410
Query: 183 GKAIHAHSLRN-LNENNIILDNA 204
K +H +SL+ NN ++ NA
Sbjct: 411 LKELHCYSLKQEFVHNNELVANA 433
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 83 QKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
Q G +IH V + L +D + ++ Y + +F+++ ++ W +IS
Sbjct: 98 QLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISS 157
Query: 142 LSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
S+ + ++MF + + P+ T V+ AC+ + ++G A+H ++
Sbjct: 158 YSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE 217
Query: 198 NIILDNAVLDF 208
++ + NA++ F
Sbjct: 218 DVFVSNALVSF 228
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + + ++ L+ KM N YTFT LK + ++ +H +V+K
Sbjct: 164 NLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK 223
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + NSL+ Y + SAH +F+ + PDVV+W ++I+G GF +++
Sbjct: 224 LGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEI 283
Query: 155 FCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + V+ + TLVSVL AC+++G+ LG+A+H ++ ++ N +LD
Sbjct: 284 FIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLD 339
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+AI L+++M + + YT T + AC+ + + KG ++H++VIK G ++ + N+L+
Sbjct: 380 DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALI 439
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANT 166
+ Y + A +F+ + D+V+W T+I G S+ EA+++F + KP+ T
Sbjct: 440 NMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDIT 499
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLR 192
+ VL AC+ L + G+ IH H LR
Sbjct: 500 MACVLPACAGLAALDKGREIHGHILR 525
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 6/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KIP I+ NT++ +Q+ P A+ L+ M + T L AC+ A K
Sbjct: 457 KIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDK 515
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G EIH H+++ G+ D+ + +L+ Y + A +F+ + D+++WT +I+G
Sbjct: 516 GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGM 575
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
GF EAI F + ++P+ ++ ++L+ACS G
Sbjct: 576 HGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSG 612
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
F + H ++ +P ++ N+++ + N + ++ +ML + T
Sbjct: 241 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 300
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L AC+ G +H +K ++ N+LL Y ++ A ++F +
Sbjct: 301 SVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDT 360
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+V+WT+II+ + G + +AI +F + V+P+ T+ S++ AC+ S G+ +H
Sbjct: 361 TIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 420
Query: 188 AHSLRNLNENNIILDNAVLD 207
++ ++N +N+ + NA+++
Sbjct: 421 SYVIKNGMGSNLPVTNALIN 440
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+NAI L K + N Y L+ C+ + + G +H+ +I G D + L
Sbjct: 78 RNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKL 135
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ YV D+ +IF+ ++ V W ++S +K G +E++ +F + V N
Sbjct: 136 VFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNC 195
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T VL ++LG K K +H + L+
Sbjct: 196 YTFTCVLKCFAALGKVKECKRVHGYVLK 223
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ ++++ TL+ Q++ P AI L+ KM + L AC+ A +
Sbjct: 213 EMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALEL 272
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH ++ K+G + + N+L+ Y +I A ++F ++ V+TW+T+I+ L+
Sbjct: 273 GEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALAL 332
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G EAIDMF ++ V+PN T V++LSACS +G +G+
Sbjct: 333 HGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGR 375
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 34/214 (15%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT +K L+++S+P NAI LY ++ + Y+ LKA A + G +I
Sbjct: 85 PDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQI 144
Query: 89 HAHVI-------------------------------KYGHLHDIFIQNSLLHFYVTVKDI 117
H + + D+ + N+++ YV V ++
Sbjct: 145 HTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGEL 204
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
SA ++FN + +V++WTT+I+G ++ EAI++F + +V+P+ +++VLSAC
Sbjct: 205 KSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSAC 264
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG+ +LG+ IH + ++ + L NA++D
Sbjct: 265 ADLGALELGEWIHNYIEKHGLCRIVSLYNALIDM 298
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 5/180 (2%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P N L + + S TP +I +Y++M N TF LKAC+ G +I
Sbjct: 78 PSTWNMLTRGYSSSDTPVESIWVYSEMKRRRIKPNKLTFPFLLKACASFLGLTAGRQIQV 137
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
V+K+G D+++ N+L+H Y + K A ++F+ + +VV+W +I++ L + G
Sbjct: 138 EVLKHGFDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKFNL 197
Query: 151 AIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ F G P+ T+V +LSAC G+ LGK +H+ + E N L A++D
Sbjct: 198 VVECFFEMIGRQFCPDETTMVVLLSACG--GNLSLGKLVHSQVMVRELELNCRLGTALVD 255
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N+++ L ++ + + +M+ CP + T L AC G +H+
Sbjct: 183 NSIMTALVENGKFNLVVECFFEMIGRQFCP---DETTMVVLLSAC--GGNLSLGKLVHSQ 237
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V+ + + +L+ Y + A +F + +V TW+ +I GL++ GF +EA
Sbjct: 238 VMVRELELNCRLGTALVDMYAKSGGLKYARLVFERMADKNVWTWSAMIVGLAQYGFAEEA 297
Query: 152 IDMFCGI----DVKPNANTLVSVLSACSSLG 178
+ +F + V+PN T + VL ACS G
Sbjct: 298 LQLFSKMMKESSVRPNYVTFLGVLCACSHTG 328
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACS----------LAHAHQKGLEIH 89
L Q + A+ L++KM+ S N+ TF L ACS H +K +I
Sbjct: 288 LAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKRHKIK 347
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFH 148
+I YG + DI + L+ A+ + F PD V W T+ LS C H
Sbjct: 348 PMMIHYGAMVDILGRAGRLN---------EAYDFIQKMPFEPDAVVWRTL---LSACSIH 395
Query: 149 KEAIDMFCGIDVKPN 163
+ D G VK
Sbjct: 396 HDEDDKGIGEKVKKR 410
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 29 PQPHILNTLLKLLTQSSTPQN---AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
P + N +++ LT +T +N AI LY +M + N++TF +C+ A G
Sbjct: 89 PNDYAFNVMIRGLT--TTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCG 146
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
H+ V+K G +D I +SL+ Y + SA ++F+ ++ D+V+W ++ISG +K
Sbjct: 147 QIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKM 206
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
GF +EA+ +F + +P TLVS+L AC LG LGK + A
Sbjct: 207 GFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEA 252
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ T+ + A+ L+ +M T L AC G + A +
Sbjct: 197 NSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGD 256
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + ++L+ Y D+ SA ++F+++ D+VTW +I+G ++ G EA+ +
Sbjct: 257 KKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTL 316
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + + PN T+V VLSAC+S+G+ LGK + ++ + ++++ + +A++D
Sbjct: 317 FNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVD 372
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 4/144 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ L+N M + N T L AC+ A G + + +
Sbjct: 298 NAMITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQ 357
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G HD+++ ++L+ Y + +A ++F ++ + V+W +IS L+ G +EA+ +
Sbjct: 358 RGLQHDVYVASALVDMYAKCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSL 417
Query: 155 FC----GIDVKPNANTLVSVLSAC 174
F G V+PN T + V +AC
Sbjct: 418 FSRMLNGSTVRPNDITFIGVFAAC 441
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+Q+ + AI L+ M Y + L A + + G ++H VIK+G +
Sbjct: 236 LSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
++ N L+ Y + + SA +IF+++ D V++ ++ISGL + GF A+++F +
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+KP+ T+ S+LSAC+S+G+ G +H+H+++ +IIL+ ++LD
Sbjct: 356 DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L Q A+ L+ KM + T L AC+ A KG+++H+H IK
Sbjct: 331 NSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI ++ SLL Y D+ +AH+ F + ++V W ++ + ++ ++
Sbjct: 391 AGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEI 450
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ PN T S+L C+SLG+ LG+ IH H ++ + N+ + + ++D
Sbjct: 451 FRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC---SLAHAHQKGLEIHAH 91
N ++ + + L+ +ML + N YTF LKAC +A + K ++H+
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVK--QVHSR 185
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
YG + N L+ Y I SA ++FN + D+VTW +ISGLS+ G +EA
Sbjct: 186 TFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
I +FC + ++ P L SVLSA + + +LG+ +H
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH 284
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L QS + A+ ++ +ML + N +T+ A+ A + ++G +IH+ V+K
Sbjct: 634 NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + + NSL+ Y I A + FN + +V++W +I+G S+ G EA+ +
Sbjct: 694 TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F CGI PN T V VLSACS +G K G
Sbjct: 754 FEEMKVCGI--MPNHVTFVGVLSACSHIGLVKEG 785
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T+ L+ C+ A G +IH HVIK G ++++ + L+ Y + A +I
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT +I+G + EA+ +F ++ ++ + S +SAC+ + + +
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IHA S ++ ++NA++
Sbjct: 582 QGQQIHAQSYAAGFGADLSINNALISL 608
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 57/106 (53%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M +++ F A+ AC+ A ++G +IHA G D+ I N+L+
Sbjct: 548 ALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALIS 607
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
Y I A+ F + + ++W +++SGL++ G+ +EA+ +F
Sbjct: 608 LYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVF 653
Score = 36.2 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q A+ L+ +M C NH TF L ACS ++GL+ + K
Sbjct: 735 NAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFK 794
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFS-------AHQIFNSVVFP-DVVTWTTIISGLSKCG 146
+HD+ ++ YV V D+ A + + P D + W T+ LS C
Sbjct: 795 ---IHDLVPKS---EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTL---LSACV 845
Query: 147 FHK 149
HK
Sbjct: 846 IHK 848
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P +++ L+ +QS A+ L+ KML+ N +T + LKA +
Sbjct: 165 KMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHH 224
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++HA +KYG+ ++ + +SLL Y + A IFNS+ +VV+W +I+G ++
Sbjct: 225 GRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHAR 284
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G + + +F + +P T SV +AC+S GS + GK +HAH +++ + +
Sbjct: 285 KGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYI 344
Query: 202 DNAVLD 207
N ++D
Sbjct: 345 GNTLID 350
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + ++ + L+ +ML H+T++ AC+ + + ++G +HAHVIK
Sbjct: 276 NALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIK 335
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +I N+L+ Y I A ++F +V D+V+W +IISG ++ G EA+ +
Sbjct: 336 SGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQL 395
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + V+PN T +SVL+ACS G
Sbjct: 396 FEQMLKAKVQPNEITFLSVLTACSHSG 422
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 4/155 (2%)
Query: 57 MLNCPSSYNHYT-FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
++NC S T +++ L C+ ++G IHAH+ D+ + N +L+ Y
Sbjct: 95 LINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG 154
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLS 172
+ A +F+ + D+V+WT +ISG S+ G EA+ +F + +PN TL S+L
Sbjct: 155 SLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLK 214
Query: 173 ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
A + S G+ +HA SL+ + N+ + +++LD
Sbjct: 215 ASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLD 249
>gi|297720781|ref|NP_001172752.1| Os01g0959600 [Oryza sativa Japonica Group]
gi|255674093|dbj|BAH91482.1| Os01g0959600 [Oryza sativa Japonica Group]
Length = 542
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 26 IKIPQPHILNTLLKLLTQSST------PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
++ P + NT++ ++ T A+ LY+++ + +TF+ L+AC+LA
Sbjct: 273 VQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLA 332
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G +IH VIKY D FI ++L+ Y + + F S D+VTWT ++
Sbjct: 333 GYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMV 392
Query: 140 SGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
SG + H++A+ +F G +KP+ T+ SV++AC+SL + G+ I + ++ +
Sbjct: 393 SGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFD 452
Query: 197 NNIILDNAVL 206
++ N+ +
Sbjct: 453 RFTVMGNSCV 462
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +++ AL ACS A + G +HA I G +F+ NSL+ Y ++ A ++F
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVF 167
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL--GS 179
+ D V+W +++SG + G +E + +F + + N+ L SV+ CS G+
Sbjct: 168 DVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGT 227
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +A+H ++ ++++ L +A++D
Sbjct: 228 MDIAEAVHGCVIKAGLDSDVFLVSAMID 255
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 11/185 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE--IHAHV 92
N+L+ ++ + + ++ M N + +K CS + +H V
Sbjct: 179 NSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCV 238
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC------G 146
IK G D+F+ ++++ Y + A +F SV P+VV + T+I+G +
Sbjct: 239 IKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKE 298
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
EA+ ++ + ++P T SVL AC+ G + GK IH ++ + + + +
Sbjct: 299 VASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGS 358
Query: 204 AVLDF 208
A++D
Sbjct: 359 ALIDL 363
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ L+++ L + +T + + AC+ + G +I K G
Sbjct: 397 QNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTV 456
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI---DMFCGID 159
+ NS +H Y D+ +A + F + DVV+W+ +IS ++ G ++A+ D
Sbjct: 457 MGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAK 516
Query: 160 VKPNANTLVSVLSACSSLG 178
V PN T + VL+ACS G
Sbjct: 517 VVPNEITFLGVLTACSHGG 535
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 94/177 (53%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q P+ A+ L+ +M + T T + +C+ ++G EIH +++
Sbjct: 176 NNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVR 235
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ ++L+ Y + A ++F + +VV+W ++I+G S G K I++
Sbjct: 236 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIEL 295
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F +D ++P TL S+L ACS + +LGK IH + +RN E +I ++++++D
Sbjct: 296 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 352
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + ++ I L+ +M T + L ACS + Q G IH ++I+
Sbjct: 277 NSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIR 336
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF+ +SL+ Y +I SA +F ++ +VV+W +ISG K G + EA+ +
Sbjct: 337 NRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVI 396
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + VKP+A T SVL ACS L + GK IH + + E N ++ A+LD
Sbjct: 397 FTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLD 452
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ T++ + +++++L+ P + +T+ LKACS G +H HVI
Sbjct: 74 NGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVI 133
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+ + +S + Y A ++F+ + DV +W +IS + G ++A++
Sbjct: 134 KSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALE 193
Query: 154 MFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+F + V KP++ TL +V+S+C+ L + GK IH +R+
Sbjct: 194 LFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRS 236
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ N ++ + + A+ ++ M + TFT L ACS +KG
Sbjct: 369 MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 428
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
EIH +I+ + + +LL Y + A IFN + D V+WT++I+
Sbjct: 429 KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSH 488
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EA+ +F + D KP+ T +++LSACS G
Sbjct: 489 GQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAG 524
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-D 131
LK C + ++G IH ++ G ++I + SL++ Y + SA +F ++ P D
Sbjct: 10 LKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLD 69
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ W +++ +K E +++F + +KP+A T SVL ACS LG GK +H
Sbjct: 70 ITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVH 129
Query: 188 AHSLRN 193
H +++
Sbjct: 130 THVIKS 135
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 86/153 (56%), Gaps = 3/153 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ A+ L+ M + + +TF + ACS A ++G +IH + +K G+ I+
Sbjct: 292 QAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIY 351
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
+L+ Y + A + F+ + PD+V WT++ISG ++ G ++ A+ ++C + ++
Sbjct: 352 FMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMER 411
Query: 162 --PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
P+ T+ SVL ACSSL + + GK IHA +++
Sbjct: 412 IMPHELTMASVLRACSSLAALEQGKQIHAQTIK 444
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K P + +++ Q+ + A+ LY +M + T L+ACS A ++G
Sbjct: 376 LKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQG 435
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA IKYG ++ I ++L Y + + +F + D++TW +ISGLS+
Sbjct: 436 KQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQN 495
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G +A+++F + KP+ T V+VLSACS +G + GK
Sbjct: 496 GEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGK 537
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A L+ M +++ + +T L A ++ G +IH +K G L + N+L+
Sbjct: 198 AWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVT 257
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANT 166
Y + A + F D +TW+ +I+G ++ G EA+++F + + KP+ T
Sbjct: 258 MYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFT 317
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V V++ACS +G+ + GK IH +SL+ E I A++D
Sbjct: 318 FVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVD 358
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
H +F L C+ QKG IHA +++ G +++ NSL++ Y I A +F
Sbjct: 10 HRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFE 69
Query: 126 SVVFPDVVTWTTIISGLSKCG-----FHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSR 180
S+ DVV+W +I+G S+ G F E + PN +T V +A SS
Sbjct: 70 SITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPET 129
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
G HA +++ N ++ + +++++
Sbjct: 130 FGGLQAHALAIKTSNFYDVFVGSSLIN 156
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+ +M + N +TF+ A S + GL+ HA IK + +D+F+ +SL++ Y
Sbjct: 100 LFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYC 159
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVS 169
+ + A ++F+++ + V+W TIISG + EA ++F + + A+ S
Sbjct: 160 KIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTS 219
Query: 170 VLSACSSLGSRKLGKAIHAHSLRN 193
VLSA + GK IH +L+N
Sbjct: 220 VLSALTVPDLVHYGKQIHCLALKN 243
>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
Length = 734
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N ++ +S + A+ L++KM P N + F AL AC+ ++G EIH V
Sbjct: 82 VWNLMISGYARSGKNREALELFHKMDIPP---NGFIFASALAACAGLGDLEQGREIHKRV 138
Query: 93 IKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ + D+ +QNSL+ Y + +IF+++ ++V+W +IS +C + ++A
Sbjct: 139 LESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQA 198
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++++ + ++PN S+L+AC+SLG+ +LG +IH + +I+++NA+++
Sbjct: 199 LELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLGLQRDIVMENALIN 257
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q P+ A+ LY++M N + F L AC+ Q G IH +
Sbjct: 183 NAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITS 242
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI ++N+L++ Y + A ++F+ + DV TWT++I+G ++ GF EA
Sbjct: 243 LGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAFAF 302
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ + V P + T V++LSACS+L + GK +H
Sbjct: 303 YDRMRRDCVSPTSATFVALLSACSTL---EQGKHLH 335
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q P A+ L+ +M+ + TF AL+ACSL + I + G
Sbjct: 390 QFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDS 449
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
I+ L+ Y D+ A +IF+ + DV+TWT +I G ++ G K A+++F +
Sbjct: 450 IRADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEG 509
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
V+P++ T SVL ACS+L G+ +HA L
Sbjct: 510 VEPDSVTFSSVLQACSNLED---GREVHARIL 538
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ + L+ C +G +H + + G+ +++ ++ Y + A F+ +
Sbjct: 17 YARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDEIA 76
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ W +ISG ++ G ++EA+++F +D+ PN S L+AC+ LG + G+ IH
Sbjct: 77 DKNDFVWNLMISGYARSGKNREALELFHKMDIPPNGFIFASALAACAGLGDLEQGREIHK 136
Query: 189 HSLRNLN-ENNIILDNAVL 206
L + + +++++ N+++
Sbjct: 137 RVLESRSIASDVVVQNSLV 155
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI--K 94
++K Q + A+ L+++M + TF+ L+ACS + G E+HA ++ +
Sbjct: 485 MIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACS---NLEDGREVHARILAAQ 541
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D F+ N L++ Y + A QIF S+ ++W+ I++ ++ G H + ID
Sbjct: 542 GGKMSD-FLGNGLINMYARCGSMRDARQIFESMDRSSRISWSAIMTLCARHGQHDDIIDT 600
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
+ V P+ TL+++L++CS G
Sbjct: 601 YRLMVNEGVVPDGVTLIAILNSCSHAG 627
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +ML ++ T A++AC+ + + G +IH IK+ + D++I N+LL+
Sbjct: 239 ALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLN 298
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + S+HQ+F SV D W ++IS + G H+EA+D+F + VK + T
Sbjct: 299 MYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERT 358
Query: 167 LVSVLSACSSLGSRKL-GKAIHAHSLRNLNENNIILDNAVL 206
+V +LS C L S L GK++HAH +++ + L NA+L
Sbjct: 359 VVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALL 399
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 38/232 (16%)
Query: 14 SFKQLNQIHAQIIK---IPQPHILNTLLKLLTQS-----------STPQNAIPLYNKMLN 59
S K QIH IK + +ILN LL + + + S P PL+N M++
Sbjct: 270 SLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMIS 329
Query: 60 CPSSY--------------------NHYTFTQALKACS-LAHAHQKGLEIHAHVIKYGHL 98
+++ + T L C LA KG +HAHVIK G
Sbjct: 330 AYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMR 389
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
D + N+LL Y + + S +IF+ + D+++W T+I L++ +A ++F +
Sbjct: 390 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 449
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++KPN+ T++S+L+AC + G++IH + +++ E N L A+ D
Sbjct: 450 RESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALAD 501
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+I P N+++K Q + Y +M + N+ T LKAC+ +A ++G
Sbjct: 13 IQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 72
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IH + + D+ + +++ FY + A +F+++ DVV W ++ G
Sbjct: 73 KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 132
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G ++EA+ + + +++PN+ T+V++L AC +LG+ +H + LRN
Sbjct: 133 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRN 183
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 123
N T L AC A + G +H + ++ G + + +L+ FY+ D+ +
Sbjct: 153 NSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLL 211
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ +V ++V+W +ISG G + +A+++F + +VK + T++ + AC+ LGS
Sbjct: 212 FDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSL 271
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
KLGK IH +++ ++ + NA+L+
Sbjct: 272 KLGKQIHQLAIKFEFVEDLYILNALLN 298
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +++ A+ L+++M++ + N T L + + +G +HA+V +
Sbjct: 528 NAMIASYVKNNQAHKALLLFHRMIS-EAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTR 586
Query: 95 YGHLH--DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G D+ + N+ + Y + SA IF ++ ++++W +I+G G +A+
Sbjct: 587 RGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAM 646
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
F + +PN T VSVLSACS G ++G + +++ N
Sbjct: 647 LAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFN 692
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 34/178 (19%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I+ N ++ + +A+ +++ML N TF L ACS
Sbjct: 621 LPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACS-------- 672
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
H FI+ L F+ V+D FN V P++V ++ I+ L++
Sbjct: 673 -------------HSGFIEMGLQLFHSMVQD-------FN--VTPELVHYSCIVDLLARG 710
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH--SLRNLNENNIIL 201
G EA + + ++P+A+ ++LS+C + K K I L +N N +L
Sbjct: 711 GCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVL 768
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 99/186 (53%), Gaps = 7/186 (3%)
Query: 29 PQPHILNTLLKLLTQS-STPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGL 86
P + NTL+ +S + AI ++ +ML S + +TF LKAC+ A +G
Sbjct: 87 PNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGR 146
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+ HA + K G D+++ NSL+H Y + + A ++F + +V+W +I + G
Sbjct: 147 QAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSG 206
Query: 147 FHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN---ENNIIL 201
+ A+ +F + +P+ T+ S++SAC+ +G+ LG HA+ LR + ++++
Sbjct: 207 LFENALKLFVEMQNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLI 266
Query: 202 DNAVLD 207
+++++D
Sbjct: 267 NSSLVD 272
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ QS +NA+ L+ +M N + YT + AC+ A G+ HA+V++
Sbjct: 196 NVMIDAYVQSGLFENALKLFVEMQNSFEP-DGYTMQSIVSACAGIGALSLGMWAHAYVLR 254
Query: 95 YGH---LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
D+ I +SL+ Y + A Q+F ++ D+ +W ++I L+ G + A
Sbjct: 255 KASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAA 314
Query: 152 IDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGK 184
+ F + PN+ T V VLSAC+ G G+
Sbjct: 315 LQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGR 351
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 87 EIHAHVIKYGHLHD--IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IHA I+ H+ +F+ + +LH + D A ++FN + P+ W T+I ++
Sbjct: 43 QIHAQAIRNFSTHNSSLFLYSRILHVSSLI-DFDYACRVFNQIDNPNSFMWNTLIGACAR 101
Query: 145 CGFHKE-AIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
KE AI++F + V+P+ +T +L AC+ + + G+ HA
Sbjct: 102 SLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQ 151
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 8/181 (4%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQK 84
I P P + N LL+ L++SS P+ + +Y K+ + + ++F LKA + A
Sbjct: 83 IPTPHPTLSNKLLRALSRSSKPETVLLVYQKIREDGLFGLDKFSFPFILKAAAKIAALND 142
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+EIH + K D F+Q L+ YV I A +F+ + + DVVTW+T+I+G +
Sbjct: 143 GMEIHGVLAKLDFYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQ 202
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A+ +F + +V+P+ L +++SAC+ ++ LG H L + ENN L
Sbjct: 203 GGHFDDALQLFEEMRSSNVEPDKMVLSTIISACAR--AKNLGYGKEVHDL--IIENNFAL 258
Query: 202 D 202
D
Sbjct: 259 D 259
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
++ + +++ Y+ V I A IFN + D++ W+ +ISG ++ +EA+ +F +
Sbjct: 289 RNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEM 348
Query: 159 D---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++P+ T++SV+SAC+ LG K IH +N + ++NA++D
Sbjct: 349 QFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVNNALID 400
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+S PQ A+ L+N+M + T + AC+ + IH V K G +
Sbjct: 333 AESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKAL 392
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ N+L+ Y + +A +F + +V++WT++I+ + G A++ F +
Sbjct: 393 SVNNALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEE 452
Query: 159 DVKPNANTL 167
+V+PNA T
Sbjct: 453 NVEPNAVTF 461
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+Q+ + AI L+ M Y + L A + + G ++H VIK+G +
Sbjct: 236 LSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
++ N L+ Y + + SA +IF+++ D V++ ++ISGL + GF A+++F +
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+KP+ T+ S+LSAC+S+G+ G +H+H+++ +IIL+ ++LD
Sbjct: 356 DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L Q A+ L+ KM + T L AC+ A KG+++H+H IK
Sbjct: 331 NSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI ++ SLL Y D+ +AH+ F ++V W ++ + ++ ++
Sbjct: 391 AGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEI 450
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ PN T S+L C+SLG+ LG+ IH H ++ + N+ + + ++D
Sbjct: 451 FRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC---SLAHAHQKGLEIHAH 91
N ++ + + L+ +ML + N YTF LKAC +A + K ++H+
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVK--QVHSR 185
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
YG + N L+ Y I SA ++FN + D+VTW +ISGLS+ G +EA
Sbjct: 186 TFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
I +FC + ++ P L SVLSA + + +LG+ +H
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH 284
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L QS + A+ ++ +ML + N +T+ A+ A + ++G +IH+ V+K
Sbjct: 634 NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + + NSL+ Y I A + FN + +V++W +I+G S+ G EA+ +
Sbjct: 694 TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F CGI PN T V VLSACS +G K G
Sbjct: 754 FEEMKVCGI--MPNHVTFVGVLSACSHIGLVKEG 785
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T+ L+ C+ A G +IH HVIK G ++++ + L+ Y + A +I
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT +I+G + EA+ +F ++ ++ + S +SAC+ + + +
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IHA S ++ ++NA++
Sbjct: 582 QGQQIHAQSYAAGFGADLSINNALISL 608
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 57/106 (53%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M +++ F A+ AC+ A ++G +IHA G D+ I N+L+
Sbjct: 548 ALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALIS 607
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
Y I A+ F + + ++W +++SGL++ G+ +EA+ +F
Sbjct: 608 LYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVF 653
Score = 36.2 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q A+ L+ +M C NH TF L ACS ++GL+ + K
Sbjct: 735 NAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFK 794
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFS-------AHQIFNSVVFP-DVVTWTTIISGLSKCG 146
+HD+ ++ YV V D+ A + + P D + W T+ LS C
Sbjct: 795 ---IHDLVPKS---EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTL---LSACV 845
Query: 147 FHK 149
HK
Sbjct: 846 IHK 848
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 38/225 (16%)
Query: 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKAC 76
NQI Q K P LN++++ ++S TP + YNK+L N S ++YTF ++ C
Sbjct: 63 NQILDQCAK-PTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTC 121
Query: 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
+ + A + G +H +IK+G +D +++ L+ Y + + S H++F SV PD+V T
Sbjct: 122 AQS-ACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQT 180
Query: 137 TIISGLSKCGF-------------------------------HKEAIDMF--CGID-VKP 162
T++S +KCG +EA+++F +D VK
Sbjct: 181 TMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 240
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
N +++SV++AC+ LG+ GK HA+ +N + + L A++D
Sbjct: 241 NEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVD 285
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ + N ++ Q + A+ L+ M N + + AC+ A +G
Sbjct: 202 MPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQG 261
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
HA++ K + + +L+ Y ++ A ++F + +V TW+T I GL+
Sbjct: 262 KWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMN 321
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
G+ ++ +++F + + PN T +SVL CS +G G++ H S++
Sbjct: 322 GYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRS-HFDSMKR 371
>gi|147821710|emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]
Length = 717
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 67/118 (56%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P P + N+L++ L+ S TP A+PLY+ L +H T+ +KAC+ + GL +
Sbjct: 162 PSPSLYNSLIRALSSSKTPLEALPLYHTKLQSGLKPDHMTYPFVIKACNESSMTWFGLLV 221
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
H HV+K G D +I +SL+H Y KD+ +A Q+FN D+V+W +I G K G
Sbjct: 222 HTHVVKSGFECDSYIVSSLIHLYANGKDLVAAKQLFNLCSDRDLVSWNAMIDGYVKRG 279
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 7/98 (7%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVK 161
NS+L +V ++ A +F+ + DVV+W ++++ ++CG E + +F + VK
Sbjct: 331 NSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEVLALFDQMRAVGVK 390
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
P T+VS+LSAC+ LG+ L K +H H+ +N+N I
Sbjct: 391 PTEATVVSLLSACAHLGA--LDKGLHLHTY--INDNRI 424
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 27 KIPQPH---ILNTLLKLLTQSSTPQN-----AIPLYNKMLNCPSSYNHYTFTQALKACSL 78
++P P NTLL+ +SS P + A+ ++ +ML + + YTF LKAC+
Sbjct: 86 RVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAA 145
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
A A ++G + HA +K G +++ +L++ Y D +A +F VV++ +
Sbjct: 146 ARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAM 205
Query: 139 ISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+ + EA+ +F G +KP + T++SVLSAC+ LG+ +LG+ +H + +R +
Sbjct: 206 IAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDY-VRKIG 264
Query: 196 ENNII-LDNAVLDF 208
+++ + A++D
Sbjct: 265 LGSLVKVSTALIDM 278
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +SS P A+ L+ +M T L AC+L A + G +H +V K
Sbjct: 203 NAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRK 262
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + +L+ Y + A +F + D W+ +I + G+ +EAI +
Sbjct: 263 IGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISL 322
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ T + VL ACS G
Sbjct: 323 FEEMKKEGMKPDDITFLGVLYACSHSG 349
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 8/188 (4%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+I P NT+++ SS + L++KM S +H+TF LKAC+ Q
Sbjct: 46 DLIAFPDTFAFNTIIRAHADSSPSFSLS-LFSKMTMAGVSPDHFTFPFVLKACARL---Q 101
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
GL++H+ + K G D+++QN L+HFY + A + F + D+V+W+++I+ +
Sbjct: 102 TGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFA 161
Query: 144 KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
K GF EA+ +F + VKP+ ++SV+SA S LG +LGK I RN E +
Sbjct: 162 KNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTV 221
Query: 200 ILDNAVLD 207
L A++D
Sbjct: 222 SLGTALVD 229
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQ 83
++P+ +++ +++ ++ A+ L+ +M L + + A S+ +
Sbjct: 144 EMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLE 203
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G I + + G + + +L+ + I + ++F+ + +V+TWT +I+GL+
Sbjct: 204 LGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLA 263
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EA+ MF + +P+ T VL ACS G
Sbjct: 264 VHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGG 301
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 94/177 (53%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q P+ A+ L+ +M + T T + +C+ ++G EIH +++
Sbjct: 368 NNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVR 427
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ ++L+ Y + A ++F + +VV+W ++I+G S G K I++
Sbjct: 428 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIEL 487
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F +D ++P TL S+L ACS + +LGK IH + +RN E +I ++++++D
Sbjct: 488 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 544
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + ++ I L+ +M T + L ACS + Q G IH ++I+
Sbjct: 469 NSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIR 528
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF+ +SL+ Y +I SA +F ++ +VV+W +ISG K G + EA+ +
Sbjct: 529 NRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVI 588
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + VKP+A T SVL ACS L + GK IH + + E N ++ A+LD
Sbjct: 589 FTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLD 644
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ T++ + +++++L+ P + +T+ LKACS G +H HVI
Sbjct: 266 NGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVI 325
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+ + +S + Y A ++F+ + DV +W +IS + G ++A++
Sbjct: 326 KSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALE 385
Query: 154 MFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+F + V KP++ TL +V+S+C+ L + GK IH +R+
Sbjct: 386 LFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRS 428
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ N ++ + + A+ ++ M + TFT L ACS +KG
Sbjct: 561 MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 620
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
EIH +I+ + + +LL Y + A IFN + D V+WT++I+
Sbjct: 621 KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSH 680
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EA+ +F + D KP+ T +++LSACS G
Sbjct: 681 GQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAG 716
>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
Length = 734
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N ++ +S + A+ L++KM P N + F AL AC+ ++G EIH V
Sbjct: 82 VWNLMISGYARSGKNREALELFHKMDIPP---NGFIFASALAACAGLGDLEQGREIHKRV 138
Query: 93 IKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ + D+ +QNSL+ Y + +IF+++ ++V+W +IS +C + ++A
Sbjct: 139 LESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQA 198
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++++ + ++PN S+L+AC+SLG+ +LG +IH + +I+++NA+++
Sbjct: 199 LELYHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLGLQRDIVMENALIN 257
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q P+ A+ LY++M N + F L AC+ + G IH +
Sbjct: 183 NAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITS 242
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI ++N+L++ Y + A ++F+ + DV TWT++I+G ++ GF EA
Sbjct: 243 LGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAFAF 302
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ G+ V P + T V++LSACS+L + GK +H
Sbjct: 303 YDGMRRDCVSPTSATFVALLSACSTL---EQGKHLH 335
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q P A+ L+ +M+ + TF AL+ACSL + I + G
Sbjct: 390 QFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDS 449
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
I+ L+ Y D+ A +IF+ + DV+TWT +I G ++ G K A+++F +
Sbjct: 450 IRADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEG 509
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
V+P++ T SVL ACS+L G+ +HA L
Sbjct: 510 VEPDSVTFSSVLQACSNLED---GREVHARIL 538
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ + L+ C +G +H + + G+ +++ ++ Y + A F+ +
Sbjct: 17 YARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDEIA 76
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ W +ISG ++ G ++EA+++F +D+ PN S L+AC+ LG + G+ IH
Sbjct: 77 DKNDFVWNLMISGYARSGKNREALELFHKMDIPPNGFIFASALAACAGLGDLEQGREIHK 136
Query: 189 HSLRNLN-ENNIILDNAVL 206
L + + +++++ N+++
Sbjct: 137 RVLESPSIASDVVVQNSLV 155
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI--K 94
++K Q + A+ L+++M + TF+ L+ACS + G E+HA ++ +
Sbjct: 485 MIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACS---NLEDGREVHARILAAQ 541
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D F+ N L++ Y + A QIF S+ ++W+ I++ ++ G H + ID
Sbjct: 542 GGKMSD-FLGNGLINMYARCGSMRDARQIFESMDRSSRISWSAIMTLCARHGQHDDIIDT 600
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
+ V P+ TL+++L++CS G
Sbjct: 601 YRLMVNEGVVPDGVTLIAILNSCSHAG 627
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 13 LSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNK-MLNCPSSYNHYTF 69
LS LN+ + I+I QP +L N L++ L+QS P AI +Y+ M N ++ TF
Sbjct: 101 LSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTF 160
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
KACS G H V+K G +FI+NSL+ Y ++ A ++F+ +
Sbjct: 161 IYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDD 220
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177
D+V+W ++I G S+C KE +D+F + +V ++ T+V V+ ACS L
Sbjct: 221 RDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYL 271
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
+I N++L Y T D+ +A ++FN + +V++WT +ISG ++ +A+ +F +
Sbjct: 323 NIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMM 382
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+VKP+ T+ SVLSACS LG G+ +H + R+ ++++ + NA++D
Sbjct: 383 DANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALID 433
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q++ +A+ L+ +M++ + T + L ACS G +H ++ ++ D++
Sbjct: 367 QANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVY 426
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ N+L+ Y + A ++F+ + D V+WT++I GL+ GF ++F +
Sbjct: 427 VGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDG 486
Query: 160 VKPNANTLVSVLSACSSLG 178
++P + + +L AC+ G
Sbjct: 487 LQPTHGSFIGILLACTHAG 505
>gi|302756495|ref|XP_002961671.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
gi|300170330|gb|EFJ36931.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
Length = 934
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q + A+ LY +ML C + TF L A S + + G +H + +
Sbjct: 176 NSLMGAFIQHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLAE 235
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH D+ +Q +L++ Y + A ++F+ + DV+ W+ +IS C ++E++ +
Sbjct: 236 AGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRL 295
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + + +PN TLVSVLSAC + + GK IH + E ++I+ NA++
Sbjct: 296 FRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIV 350
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF---- 124
F L+ CS + +G +IHA + + D + N L+ Y+ + A Q+F
Sbjct: 8 FVDLLRQCSRSKDLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLL 67
Query: 125 -NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSR 180
SVV ++V WT +I+ ++ G K AI +F + ++ P+ TLV++ AC + +
Sbjct: 68 ETSVV--NLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENL 125
Query: 181 KLGKAIHAH 189
+ GK IHA+
Sbjct: 126 EDGKKIHAY 134
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++ N ++ A+ L+ M++ +++ TF AL ACS
Sbjct: 368 RVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDNITFLSALCACSGTSGLSH 427
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G HA +++ G DIF+ N+L++ Y + +A +F + DV TW +I +
Sbjct: 428 GEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFEELPEQDVRTWNAMILAYVQ 487
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
+ + +F + KP+ T L+AC
Sbjct: 488 NEEERSGLLVFRHMMQSGYKPDEVTFAITLNAC 520
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ +M +S + T +AC + G +IHA++ D+ + +SL+
Sbjct: 93 AIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKIHAYL---SCNSDVVLGSSLIT 149
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNA 164
Y + A +F S+ + V W +++ + +EA++++ CG P+
Sbjct: 150 MYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFIQHDRVEEAMELYWEMLQCGF--LPSR 207
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T ++VL+A SSL S + GK +H +E+++++ A+++
Sbjct: 208 PTFLTVLAAISSLESLRHGKLVHDTLAEAGHEDDVVVQTALVN 250
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ ++ L+ KM + N+ T L AC A + G IH V++ G+ D+ + N++
Sbjct: 290 EESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAI 349
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + A +F+ V VVT ++ + G A+ +F + ++ +
Sbjct: 350 VSMYGKCGSLEDAWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDN 409
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T +S L ACS G+ HA L E +I + NA+++
Sbjct: 410 ITFLSALCACSGTSGLSHGEFFHARMLECGLELDIFVANALVN 452
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ QS A+ ++ +M + +F +KA S + ++ VI
Sbjct: 588 NSVIFAHVQSGRDSEALKMFWRMQQAGVWPDKTSFVAVVKAYSNVGMTEPEIDWLRAVIA 647
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ D + I N+L+ Y A +F+S+ D VTW T++S + +++I
Sbjct: 648 NSDVEDGVPIGNALISMYGRCGSFGKARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQ 707
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + P+ T+++VL+ C+SL + + GKAI N ++ NA+L+
Sbjct: 708 LFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICVWLDHTPLSANQMIGNAILN 764
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + Q +++I L+ +ML + + T L C+ A Q+G I +
Sbjct: 690 NTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICVWLDH 749
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ I N++L+ Y A +IF+ + D V+W +I + A +
Sbjct: 750 TPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNALIGAYGSYSRGRYAFQI 809
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAI 186
F + ++ P+A T ++LS CS G LG+A+
Sbjct: 810 FQAMQLEGSTPDAVTFTTILSVCSHGG--LLGEAV 842
Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL-EIHAHVI 93
N ++ Q+ ++ + ++ M+ + TF L AC H + L ++H+ +
Sbjct: 479 NAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNACY----HPRFLRDVHSLIS 534
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC-------- 145
+ G + + +QN+L+ Y + +Q+F + + +W +I+ ++
Sbjct: 535 ETG-ISNTVVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWNVMIASCAQTCWNSVIFA 593
Query: 146 ----GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G EA+ MF + V P+ + V+V+ A S++G
Sbjct: 594 HVQSGRDSEALKMFWRMQQAGVWPDKTSFVAVVKAYSNVG 633
>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P ++++ ++ L ++ + A+ +++M Y+ YTF ALKAC+ + A
Sbjct: 183 EMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNY 242
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G EIHA +K G F+ N+L Y + +F + DVV+WTTII+ L +
Sbjct: 243 GREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQ 302
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G + A+ F + DV PN T +V+S C++L + G+ +HA
Sbjct: 303 MGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 349
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q + A+ + +M S N YTF + C+ + G ++HA ++
Sbjct: 295 TIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHL 354
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + ++NS++ Y + S+ IF+ + D+V+W+TII+G S+ G EA ++
Sbjct: 355 GLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELL 414
Query: 156 CGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ + KP L SVLSAC ++ + GK +HA+ L
Sbjct: 415 SWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL 453
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 6/192 (3%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKM-LNCPSS 63
K LK + L K+ Q ++ TL+ ++ A+ L+ M +
Sbjct: 61 KQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLR 120
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
+ + + A KAC L G +H + +K G ++ +F+ ++LL Y IF ++
Sbjct: 121 IDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRV 180
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + +VV+WT II+GL + G++KEA+ F + V+ ++ T L AC+ G+
Sbjct: 181 FHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGAL 240
Query: 181 KLGKAIHAHSLR 192
G+ IHA +++
Sbjct: 241 NYGREIHAQAMK 252
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+ N L V + +A ++F+ + D ++WTT+ISG EA+ +F +
Sbjct: 55 DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 114
Query: 160 VKPNANTLVSVLS----ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+ +LS AC G+ +H ++++ N++ + +A+LD
Sbjct: 115 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDM 167
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 34/218 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + +S +A+ LY M++ N Y+F LK+C+ + A +
Sbjct: 31 ETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLKSCAKSKAFR 90
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN------------------ 125
+G +IH HV+K G+ D+++ SL+ Y + AH++F+
Sbjct: 91 EGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYA 150
Query: 126 -------------SVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVS 169
++ D+V+W +ISG + +KEA++++ +VKP+ +T+V+
Sbjct: 151 SRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVT 210
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V+SAC+ + +LG+ +H+ + +N+ + NA++D
Sbjct: 211 VVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMD 248
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ LY +M+ + T + AC+ + + G ++H+ +
Sbjct: 174 NAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIED 233
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ + N+L+ Y ++ +A ++F +V D ++W T+I G + +KEA+ +
Sbjct: 234 HGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFL 293
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++SVLSAC+ LG+ +G+ IH +
Sbjct: 294 FQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVY 331
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A G IH ++ K
Sbjct: 275 NTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDK 334
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + ++ SL+ Y DI +A Q+F+S++ + +W +I G + G A
Sbjct: 335 RLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAF 394
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+F + ++P+ T V +LSACS G LG+ I
Sbjct: 395 DLFSKMRKSGIEPDDITFVGLLSACSHSGMLDLGRHI 431
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 22 HAQII--KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKML----NCPSSY--NHYTFTQ 71
HA+++ +IP P + NTL++ S P++A+ +Y +M C + TF
Sbjct: 60 HARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPF 119
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L+AC+ A + G ++HAHV+K G D F++N+L+ + T D+ +A +F+ D
Sbjct: 120 VLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEARED 179
Query: 132 VVTWTTIISGLSKCGFHKEAIDMF 155
V W+ +ISG ++ G A ++F
Sbjct: 180 AVAWSAMISGFARRGDIGAARELF 203
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
+ D+ N ++ Y + D+ A ++F+ DVV+W +ISG +CG HK+A+++F
Sbjct: 208 VKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQ 267
Query: 156 -CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIILDNAVLDF 208
+ KP+ T++S+LSAC+ G G+ +H + + +L NA++D
Sbjct: 268 MQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDM 323
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + + A+ L+ +M + T L AC+ + G +H +
Sbjct: 246 NAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFL-- 303
Query: 95 YGHLHDI----FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
G I + N+L+ Y + SA ++F + +V TW +II GL+ G E
Sbjct: 304 SGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTE 363
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLG 178
AID+F + +VKP+ T V+VL ACS G
Sbjct: 364 AIDVFQKMLQGNVKPDEITFVAVLVACSHGG 394
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVTWTTIISGLSK 144
++HA ++ G L D L+ +AH +F+ + PD + T+I G +
Sbjct: 26 QVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAH 85
Query: 145 CGFHKEAIDMF---------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
++A+ ++ CG V+P+ T VL AC+++G+ + G +HAH ++
Sbjct: 86 SYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGC 145
Query: 196 ENNIILDNAVL 206
E++ + NA++
Sbjct: 146 ESDAFVRNALI 156
>gi|302802776|ref|XP_002983142.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
gi|300149295|gb|EFJ15951.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
Length = 544
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+ + L+ C+ A Q+G +IH+++ G D + N L+ Y+ + A ++F+ +
Sbjct: 9 TYARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILGNHLIEMYLKCGSLRDAQRMFDEM 68
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
V D + WT++IS S+ G +K A+ +F G VKP+ T V+VL+ C + + + GK
Sbjct: 69 VSRDAILWTSMISAYSERGHYKTALKLFQRMQGESVKPDNVTFVTVLNCCGKMSALQEGK 128
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
IH+ N EN++I+ A+L+
Sbjct: 129 LIHSQLTGNGFENDLIVKTALLNM 152
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 83/156 (53%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +++ ++ + A+ L+ +M ++ TF L C A Q+G IH+ +
Sbjct: 75 LWTSMISAYSERGHYKTALKLFQRMQGESVKPDNVTFVTVLNCCGKMSALQEGKLIHSQL 134
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G +D+ ++ +LL+ Y + A ++F + D++TW ++S + ++EA+
Sbjct: 135 TGNGFENDLIVKTALLNMYGKCGSLTDARKVFEEIQGKDIITWNAMLSVYVQHSAYEEAL 194
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+++ +++ P+ +T V+V++AC+ + + G+ +HA
Sbjct: 195 ELYRKMELTPSVSTFVTVINACAGATALEDGRQVHA 230
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ TQ + A+ L+ M + + FT L AC+ A +G +HA + + G
Sbjct: 278 MISFYTQWHRSKEALGLFRLMRLEGVRVDKFAFTTTLSACNGAECLAEGRLLHAGIEESG 337
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
D+ ++++L+H Y +A ++F SV +V+ + +I+ + G +E +D++
Sbjct: 338 FESDVVVRSALIHMYGRCGLYDAAWELFQSVPTKNVLLSSAMIATCERHGHWRELLDVYQ 397
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ P T++SVL AC+ L + GKA+H
Sbjct: 398 NVQSVPYKLTIISVLKACAELQELERGKAVH 428
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 10/177 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L + Q S + A+ LY KM PS TF + AC+ A A + G ++HA V
Sbjct: 178 NAMLSVYVQHSAYEEALELYRKMELTPSVS---TFVTVINACAGATALEDGRQVHAVVTA 234
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + ++LL+ Y + A ++F D V W +IS ++ KEA+ +
Sbjct: 235 RGLETEDAVSSALLNMYGKCGSLEDAAKVFWKRREYDDVAWAHMISFYTQWHRSKEALGL 294
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F G+ V A T + LSAC+ G+ +HA + E+++++ +A++
Sbjct: 295 FRLMRLEGVRVDKFAFT--TTLSACNGAECLAEGRLLHAGIEESGFESDVVVRSALI 349
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
QS A+ L+++M + + +T L ACS A A ++G ++H +++K G ++
Sbjct: 290 QSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLY 349
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
I +L+ Y A + FN + PD+V WT++I+G + G +++A+ ++C + ++
Sbjct: 350 IMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEG 409
Query: 162 --PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
PN T+ SVL ACS+L + G+ IHA +++
Sbjct: 410 ILPNELTMASVLKACSNLAAFDQGRQIHARTIK 442
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ QP ++ +++ Q+ ++A+ LY +M N T LKACS A +G
Sbjct: 374 LQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG 433
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA IKYG ++ I ++L Y ++ + +F + D+++W +ISGLS+
Sbjct: 434 RQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQN 493
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G+ KEA+++F + D KP+ T V+VLSACS +G
Sbjct: 494 GYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMG 529
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A ++ M N + FT L A ++ G +IH +K G L + I N+L+
Sbjct: 196 AFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVT 255
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + + Q+F + +TW+ +I+G ++ G +A+ +F + + P+ T
Sbjct: 256 MYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFT 315
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LV VL+ACS + + GK +H + L+ E+ + + A++D
Sbjct: 316 LVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVD 356
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLH 109
+PL+ + L+ +S +T ++L QKG +HA +IK I++ NSL++
Sbjct: 1 MPLHPQNLSSFNSLVQFTHQKSL---------QKGRALHAQIIKLASSSSCIYLANSLIN 51
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-----FHKEAIDMFCGIDVKPNA 164
FY + A +F+ + DV++W +I+G S+ G F E ++ PNA
Sbjct: 52 FYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNA 111
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+T + +A S+L S G+ HA +++
Sbjct: 112 HTFSGIFTAASNLSSIFFGQQAHAVAIK 139
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +TF+ A S + G + HA IK +D+F+ +SLL+ Y +F A ++F
Sbjct: 110 NAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVF 169
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + + VTW T+ISG + EA ++F + + N SVLSA +
Sbjct: 170 DRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVD 229
Query: 182 LGKAIHAHSLR 192
GK IH +++
Sbjct: 230 SGKQIHCLAVK 240
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 36/220 (16%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + +S A+ LY M++ N Y+F LK+C+ + A
Sbjct: 23 ETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALI 82
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN------------------ 125
+G +IH HV+K G+ D+++ SL+ Y + AH++F+
Sbjct: 83 EGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYA 142
Query: 126 -------------SVVFPDVVTWTTIISG-LSKCGFHKEAIDMFCGI---DVKPNANTLV 168
+ DVV+W +ISG + C F KEA++++ + +VKP+ +T+V
Sbjct: 143 SRGYINNARKLFDEISVKDVVSWNAMISGYVETCNF-KEALELYKDMMKTNVKPDESTMV 201
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+V+SAC+ GS +LG+ +H+ + +NI + N ++D
Sbjct: 202 TVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDL 241
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ LY M+ + T + AC+ + + + G ++H+ +
Sbjct: 166 NAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIED 225
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G +I I N L+ Y ++ +A +F + DV++W T+I G + +KEA+ +
Sbjct: 226 HGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLL 285
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + PN T++SVL AC+ LG+ +G+ IH +
Sbjct: 286 FQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVY 323
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ T + + A+ L+ +ML S N T L AC+ A G IH ++ K
Sbjct: 267 NTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINK 326
Query: 95 Y--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G + + SL+ Y DI +A Q+F+S++ + +W +I G + G A
Sbjct: 327 RLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAF 386
Query: 153 DMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
D+F GID P+ T V +LSACS G LG+ H R+++++
Sbjct: 387 DLFSKMRKNGID--PDDITFVGLLSACSHSGMLDLGR----HIFRSMSQD 430
>gi|414864687|tpg|DAA43244.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 658
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
Q AI L+ ++LN P +++T T + A L + ++ ++H+++IK G+ I N++
Sbjct: 408 QEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSLRQCRQMHSYIIKLGYGDSTLIMNAV 467
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPN 163
+H Y DI ++ +IF+ + DV++W TII G + G K A++MF C ++PN
Sbjct: 468 MHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKTALEMFDEMKCN-GIEPN 526
Query: 164 ANTLVSVLSACSSLG 178
+T VSVL+ACS G
Sbjct: 527 ESTFVSVLTACSVSG 541
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N +++ + P +A+ Y ML + + +TF +K C+ A A +G
Sbjct: 85 PGAFLHNVMIRGFADAGLPLDALAAYRAMLAASARPDRFTFPVVVKCCTRAGALGEGRAA 144
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA VIK G D++ NSL+ Y + + A ++F+ + D+V+W T++ G G
Sbjct: 145 HAAVIKLGLGADMYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMG 204
Query: 149 KEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
A+ DM + V+ + +++ L+AC + G+ IH +++R+ E ++ + +
Sbjct: 205 ALALACFRDMNDALRVRHDGVGVIAALAACCLESALAQGREIHGYAIRHGLEQDVKVGTS 264
Query: 205 VLD 207
++D
Sbjct: 265 LVD 267
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC L A +G EIH + I++G D+ + SL+ Y ++ A +F +++
Sbjct: 230 ALAACCLESALAQGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVLYAENVFATMLLRT 289
Query: 132 VVTWTTIISGLSKCGFHKEAIDMF-CGIDVKP-----NANTLVSVLSACSSLGSRKLGKA 185
VVTW +I G + ++ +D F C + ++ A T +++L+AC S G++
Sbjct: 290 VVTWNCLIGGYA---LNERPVDAFDCFMQMRAEGFQVEAVTAINLLAACGQTESSLYGRS 346
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
+HA+ +R +++L+ A+L+
Sbjct: 347 VHAYVVRRHFLPHVVLETALLE 368
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC + G +HA+V++ L + ++ +LL Y V + S+ +IF +
Sbjct: 327 TAINLLAACGQTESSLYGRSVHAYVVRRHFLPHVVLETALLEMYGNVGKVESSEKIFGQM 386
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
VVTW +I+ ++EAI +F + + P+ T+ +V+ A LGS + +
Sbjct: 387 TEKTVVTWNNMIAAYIYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSLRQCR 446
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
+H++ ++ ++ ++ NAV+
Sbjct: 447 QMHSYIIKLGYGDSTLIMNAVM 468
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 29 PQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK-G 85
P P + N +++ T+ + NAI +Y +M + +TF LKAC+ + A G
Sbjct: 105 PDPDVFLWNAIIRCYTRQNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLDIG 164
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H ++G D+F+QN L+ FY + I A+ +F + +V+WT+IISG ++
Sbjct: 165 RRVHGQAFRHGLEADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQN 224
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G EA+ +F ++VKP+ LVSVL A + + + GK+IH
Sbjct: 225 GQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHG 270
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q+ P A+ ++N+M + L+A + + G IH VIK G +I
Sbjct: 222 AQNGQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEI 281
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGI 158
+ SL Y + A F+ V P+++ W +ISG +K G+ +EA+++F +
Sbjct: 282 DLLISLTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMITM 341
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ P++ T+ SV+ AC+ +GS +L + + + R+ N+ + +A++D
Sbjct: 342 NFGPDSITITSVILACAQMGSLELARWMSDYIGRSEFRNDAFVSSALID 390
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA + ++ F+ L++ T+ +I A +F+ PDV W II ++
Sbjct: 64 QIHAQLFVSRLQYNGFLITKLVNCCATLGEIRYARNVFDYYPDPDVFLWNAIIRCYTRQN 123
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACS-SLGSRKLGKAIHAHSLRNLNENNIILD 202
AI+M+ + ++P+ T VL AC+ SL +G+ +H + R+ E ++ +
Sbjct: 124 LFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQAFRHGLEADVFVQ 183
Query: 203 NAVLDF 208
N ++ F
Sbjct: 184 NGLVTF 189
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 63/130 (48%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
++IP + N ++ ++ + A+ L+ +M+ + T T + AC+ + +
Sbjct: 307 VRIPNLILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACAQMGSLELA 366
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ ++ + +D F+ ++L+ + + A +F+ + DVV W+++I G
Sbjct: 367 RWMSDYIGRSEFRNDAFVSSALIDMFSKCGSVDLARDVFDRALDKDVVLWSSMIMGYGLH 426
Query: 146 GFHKEAIDMF 155
G +E+I++F
Sbjct: 427 GRGQESINLF 436
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 101/187 (54%), Gaps = 6/187 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
K+ QP + N ++++ Q P +A+ L+ +ML + + +T+ +KAC
Sbjct: 71 KLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLID 130
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G+ IH K+G+ D F+QN+LL Y+ + +A +F+ + V++W T+I+G
Sbjct: 131 VGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYF 190
Query: 144 KCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ ++A++++ + V+P+ T+VSVL AC L + +LG+ +H NI+
Sbjct: 191 RNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIV 250
Query: 201 LDNAVLD 207
+ NA++D
Sbjct: 251 VRNALVD 257
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +++ ++A+ +Y +M++ + T L AC L + G E+H V +
Sbjct: 183 NTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQE 242
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +I ++N+L+ YV + A + + DVVTWTT+I+G G + A+ M
Sbjct: 243 KGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSAL-M 301
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
CG+ VKPN+ ++ S+LSAC SL GK +HA ++R E+ +I++ A+++
Sbjct: 302 LCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALIN 358
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q+ + AI L+ +ML +H TF L A ++ Q+ + IH ++I+
Sbjct: 385 NALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIR 444
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAI 152
G L+ + + + L+ Y + AHQIFN + D++ W+ II+ K G K A+
Sbjct: 445 SGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAV 504
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + VKPN T SVL ACS G
Sbjct: 505 KLFNQMVQSGVKPNHVTFTSVLHACSHAG 533
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 57 MLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
M+ C N + L AC G +HA I+ ++ ++ +L++ Y
Sbjct: 305 MMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCN 364
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 172
++++F W ++SG + +EAI++F + DV+P+ T S+L
Sbjct: 365 CGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLP 424
Query: 173 ACSSLGSRKLGKAIHAHSLRN 193
A + L + IH + +R+
Sbjct: 425 AYAILADLQQAMNIHCYLIRS 445
Score = 37.0 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+N+M+ NH TFT L ACS HA ++ G SL +
Sbjct: 503 AVKLFNQMVQSGVKPNHVTFTSVLHACS-----------HAGLVNEGF--------SLFN 543
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVS 169
F + HQI + V +T +I L + G +A ++ + + PN +
Sbjct: 544 F------MLKQHQIISHVDH-----YTCMIDLLGRAGRLNDAYNLIRTMPITPNHAVWGA 592
Query: 170 VLSACSSLGSRKLGK 184
+L AC + +LG+
Sbjct: 593 LLGACVIHENVELGE 607
>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
Length = 495
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q A+ L+ KM N TF L AC+ A A ++G IH V +
Sbjct: 45 STMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVAR 104
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + +L+ Y + A Q+F+ +V DVVTW+T+IS ++ G +EAI +
Sbjct: 105 KKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQL 164
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
F ++ V+PN L+S+L ACSS G+ GK H
Sbjct: 165 FGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTH 200
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q + AI L+ M N L ACS A A +G H V+
Sbjct: 146 STMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVI 205
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ N+L+ Y D+ SA +F + D+++W+ +++ +++ G K+A
Sbjct: 206 CGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVH 265
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F +D VKP+ T VS+L ACS LG+ G IH ++ + ++N+++D
Sbjct: 266 FRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGFQSVMYIENSLIDM 322
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ +L ++ + ++A + +M ++ TF L ACSL A +G IH +
Sbjct: 247 SAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRA 306
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++I+NSL+ Y + +A +IF+ + +V+TWTT+I+ + KEA+++
Sbjct: 307 EGFQSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEALEL 366
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ V+P+ +S++ +CS G + G+
Sbjct: 367 FEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGR 399
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
F+ NSLL+ Y + A + F S+ +V++W+T+++ ++ G H +A+ +F ++
Sbjct: 11 FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
V+PN T +SVL AC++ + + G+ IH R + +I+ A++
Sbjct: 71 GVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALV 118
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L+ +Q+ A+ L++KM + +T LKACS A ++G + H +++K
Sbjct: 283 SALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLK 342
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ I+ +L+ Y A + F+ ++ PD+V WT+II+G + G ++EA+ M
Sbjct: 343 SGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSM 402
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ + ++ PN T+ SVL ACS+L + + GK IHA +++
Sbjct: 403 YGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIK 443
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ +Y +M N T LKACS A ++G +IHA IKYG ++
Sbjct: 392 QNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELS 451
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-- 160
I+++L Y + IF ++ D+V+W +ISGLS+ G +EA+++F + +
Sbjct: 452 IRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEG 511
Query: 161 -KPNANTLVSVLSACSSLGSRKLGKA 185
KP+ T V+VLSACS +G K G A
Sbjct: 512 TKPDHITFVTVLSACSHMGIVKRGWA 537
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ T++ + A+ ++ M + N + FT L A
Sbjct: 172 RMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDS 231
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H V+K G L + + N+L+ Y ++ + +F + +TW+ +I+G S+
Sbjct: 232 GKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQ 291
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A+ +F + P+ TLV VL ACS + + + GK H + L++ E I
Sbjct: 292 AGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYT 351
Query: 202 DNAVLD 207
A++D
Sbjct: 352 ATALVD 357
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H IK + D+F+ +SL++FY V +F A ++F+ + ++V+WTT+ISG +
Sbjct: 133 QVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQ 192
Query: 147 FHKEAIDMFCGID-VKPNANTLV--SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
KEA+ +F + V+ N N V SVLSA GK +H +++ N
Sbjct: 193 MAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHC----------VVVKN 242
Query: 204 AVLDFM 209
VL+F+
Sbjct: 243 GVLEFV 248
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 83 QKGLEIHAHVIKYGHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+KG +HAH+IK +L ++ N+L+ FY + A +F ++ +VV++ +I G
Sbjct: 24 KKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHG 83
Query: 142 LSKCG-----FHKEAIDMFCGIDVKPNANTLVSVLSACS-SLGSRKLGKAIHAHSLRNLN 195
LS G F E ++ P+A+T V +A + +LG + +H ++ +
Sbjct: 84 LSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTAS 143
Query: 196 ENNIILDNAVLDF 208
+++ + +++++F
Sbjct: 144 IDDVFVGSSLVNF 156
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ ++ L+N+M N++T + ALK+C A G +H +K + HD+F+ +L
Sbjct: 219 EESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIAL 278
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
L Y +I A ++F + D++ W+ +I+ ++ KEA+D+F + V PN
Sbjct: 279 LELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNN 338
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T SVL AC+S S LGK IH+ L+ +N+ + NA++D
Sbjct: 339 FTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMD 381
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
QS + A+ L+ +M N++TF L+AC+ + + G +IH+ V+K+G ++
Sbjct: 314 AQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNV 373
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ N+++ Y +I ++ ++F + + VTW TII G + G + A+++F +
Sbjct: 374 FVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEH 433
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
D++P T SVL A +SL + + G IH+ +++ + + ++ N+++D
Sbjct: 434 DMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDM 483
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q + A+ L+ ML T++ L+A + A + GL+IH+ IK
Sbjct: 408 NTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIK 467
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI-- 152
+ D + NSL+ Y I A F+ + D V+W +I G S G EA+
Sbjct: 468 TMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNL 527
Query: 153 -DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKA 185
DM D KPN T V VLSACS+ G G+A
Sbjct: 528 FDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQA 561
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 65 NHYTFTQALK---ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
N + FT LK + LAH +HA V K GH D F+ +L+ Y ++ A
Sbjct: 135 NPFVFTTLLKLLVSMDLAHL---CWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVAR 191
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLG 178
+F+ + D+V+WT +++ ++ F++E++ +F + + KPN T+ L +C L
Sbjct: 192 HVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLE 251
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +GK++H +L+ ++++ + A+L+
Sbjct: 252 AFNVGKSVHGCALKGCYDHDLFVGIALLEL 281
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H H++K G D+F QN LL+FYV + A ++F+ + + +++ T+ G S+
Sbjct: 54 GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
QS A+ L++ M + +TF + ACS A +G ++H +++K G I+
Sbjct: 287 QSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIY 346
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
+ +L+ Y I A + F+ + PD+V WT++I G + G +++A+ ++ ++++
Sbjct: 347 VMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEG 406
Query: 162 --PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
PN T+ SVL ACSSL + + GK IHA +++
Sbjct: 407 ILPNELTMASVLKACSSLAALEQGKQIHARTVK 439
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ ++A+ LY +M N T LKACS A ++G +IHA +KYG ++
Sbjct: 388 QNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVP 447
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-- 160
I ++L Y + +F + DV++W +ISGLS+ G KEA+++F + +
Sbjct: 448 IGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEG 507
Query: 161 -KPNANTLVSVLSACSSLG 178
KP+ T V++LSACS +G
Sbjct: 508 TKPDYVTFVNILSACSHMG 526
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ M N + FT L A +L G +IH +K G L + + N+L+
Sbjct: 193 ALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVT 252
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + A Q F + + +TW+ +I+G ++ G +A+ +F + ++P+ T
Sbjct: 253 MYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFT 312
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V V++ACS LG+ GK +H + L+ E+ I + A++D
Sbjct: 313 FVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVD 353
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 58 LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
+ PS+ + +T AL + + QKG +HA +IK ++I NSL++ Y + +
Sbjct: 1 MTLPSNRSFFT---ALLQYTHNRSLQKGKALHAQIIKSSS-SCVYIANSLVNLYAKCQRL 56
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCG--FHKEAIDMFCGI---DVKPNANTLVSVLS 172
A +F + DVV+W II+G S+ G +++F + + PNA+T V +
Sbjct: 57 REAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFT 116
Query: 173 ACSSLGSRKLGKAIHAHSLR 192
A S+L G+ HA +++
Sbjct: 117 AASTLVDAAGGRLAHAVAIK 136
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Query: 45 STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
S + + L+ +M ++ N +TF A S G HA IK D+F+
Sbjct: 87 SGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVG 146
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
+SL++ Y A ++F+++ + V+W T+ISG + EA+ +F + +
Sbjct: 147 SSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEG 206
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
N SVLSA + GK IH +++N
Sbjct: 207 ENEFVFTSVLSALTLPELVNNGKQIHCIAVKN 238
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
QS A+ L++ M + +TF + ACS A +G ++H +++K G I+
Sbjct: 287 QSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIY 346
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
+ +L+ Y I A + F+ + PD+V WT++I G + G +++A+ ++ ++++
Sbjct: 347 VMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEG 406
Query: 162 --PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
PN T+ SVL ACSSL + + GK IHA +++
Sbjct: 407 ILPNELTMASVLKACSSLAALEQGKQIHARTVK 439
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ ++A+ LY +M N T LKACS A ++G +IHA +KYG ++
Sbjct: 388 QNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVP 447
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-- 160
I ++L Y + +F + DV++W +ISGLS+ G KEA+++F + +
Sbjct: 448 IGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEG 507
Query: 161 -KPNANTLVSVLSACSSLG 178
KP+ T V++LSACS +G
Sbjct: 508 TKPDYVTFVNILSACSHMG 526
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ M N + FT L A +L G +IH +K G L + + N+L+
Sbjct: 193 ALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVT 252
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + A Q F + + +TW+ +I+G ++ G +A+ +F + ++P+ T
Sbjct: 253 MYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFT 312
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V V++ACS LG+ GK +H + L+ E+ I + A++D
Sbjct: 313 FVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVD 353
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 58 LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
+ PS+ + +T AL + + QKG +HA +IK ++I NSL++ Y + +
Sbjct: 1 MTLPSNRSFFT---ALLQYTHNRSLQKGKALHAQIIKSSS-SCVYIANSLVNLYAKCQRL 56
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCG--FHKEAIDMFCGI---DVKPNANTLVSVLS 172
A +F + DVV+W II+G S+ G +++F + + PNA+T V +
Sbjct: 57 REAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFT 116
Query: 173 ACSSLGSRKLGKAIHAHSLR 192
A S+L G+ HA +++
Sbjct: 117 AASTLVDAAGGRLAHAVAIK 136
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Query: 45 STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
S + + L+ +M ++ N +TF A S G HA IK D+F+
Sbjct: 87 SGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVG 146
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
+SL++ Y A ++F+++ + V+W T+ISG + EA+ +F + +
Sbjct: 147 SSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEG 206
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
N SVLSA + GK IH +++N
Sbjct: 207 ENEFVFTSVLSALTLPELVNNGKQIHCIAVKN 238
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 25/207 (12%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC--PSSYNHYTFTQALKACSLAHAHQ 83
I+ P I L+K + +S P ++ LY +ML+C SS ++ LKAC A
Sbjct: 67 IQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFD 126
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G ++H V+K D F+ NS++ Y+ +I A ++F+ + DVV+W ++I+G
Sbjct: 127 EGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186
Query: 144 KCGFHKEAIDMF----------C------------GIDVKPNANTLVSVLSACSSLGSRK 181
K G + A ++F C + ++P+ +VSVLSA + LG +
Sbjct: 187 KAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVE 246
Query: 182 LGKAIHAH-SLRNLNENNIILDNAVLD 207
GK +HA+ S+ + ++ + +A++D
Sbjct: 247 EGKWLHAYVSMNKIELSSGFIGSALID 273
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 83 QKGLEIHAHV-IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIIS 140
++G +HA+V + L FI ++L+ Y I +A+ +F S+ ++ W ++IS
Sbjct: 246 EEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMIS 305
Query: 141 GLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGK 184
GL+ G +EA+D+F +D++PN T + +LS CS G + G+
Sbjct: 306 GLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQ 352
>gi|255542118|ref|XP_002512123.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549303|gb|EEF50792.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQS+ +A+ L+ N T AL AC+ G IH IK G
Sbjct: 181 TQSNLSYDALKLFLDKKWAGILPNDVTIVSALAACARMGNLNLGRSIHGLAIKLGFAEPT 240
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ N+L+H Y A +F + DVV+W +IISG S+ G EA+D+F +
Sbjct: 241 LM-NALVHMYAKCHMNRDASYLFETASEKDVVSWNSIISGCSQMGSPYEALDLFQRMRKE 299
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLDF 208
V P+A TLVSV SAC+SLG+ ++G ++HA+S++ L +N+ + A+L F
Sbjct: 300 SVSPDAVTLVSVFSACASLGALQVGSSLHAYSVKEGLLSSNVYVSTALLTF 350
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ P + L+N+M N +T + AC+ A +G H + IK G + +
Sbjct: 81 QNDCPVEGLILFNRMREGLIEGNQFTLGILVTACTKLGALHQGKCFHGYAIKSGVQLNSY 140
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
+ +LL YV I A +F+ + D+V+WT +I G ++ +A+ +F +D K
Sbjct: 141 LMTALLDMYVKCGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSYDALKLF--LDKKW 198
Query: 162 ----PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
PN T+VS L+AC+ +G+ LG++IH +++
Sbjct: 199 AGILPNDVTIVSALAACARMGNLNLGRSIHGLAIK 233
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q +P A+ L+ +M S + T AC+ A Q G +HA+ +K
Sbjct: 274 NSIISGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFSACASLGALQVGSSLHAYSVK 333
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G L ++++ +LL FY D SA IF+ + + VTW+ +I G G ++
Sbjct: 334 EGLLSSNVYVSTALLTFYAKCGDAGSARTIFDGMQEKNTVTWSAMIGGYGVQGDAGGSLS 393
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + ++KPN ++LSACS G
Sbjct: 394 IFNDMLRQELKPNEVIFTTILSACSHTG 421
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
++ACS +G ++H +IK G D F+ L FY +I + F+ + +V
Sbjct: 11 IRACSELRDIDEGRKLHCQIIKAGP-PDSFVLTGLTDFYAKCGEIECSRCAFDENLDRNV 69
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT++I G + E + +F + ++ N TL +++AC+ LG+ GK H +
Sbjct: 70 VSWTSMIVGYVQNDCPVEGLILFNRMREGLIEGNQFTLGILVTACTKLGALHQGKCFHGY 129
Query: 190 SLRNLNENNIILDNAVLDF 208
++++ + N L A+LD
Sbjct: 130 AIKSGVQLNSYLMTALLDM 148
>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1005
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L + S + L+ +M + N YT AL AC + G EIHA V+K
Sbjct: 233 NSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLK 292
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
H ++++ N+L+ Y + A +I + DVVTW ++I G + +KEA+
Sbjct: 293 STHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQF 352
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
FC + KP+ +L SV++A L + G +HA+ +++ ++N+++ N ++D
Sbjct: 353 FCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLID 408
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + P +A+ +Y M + Y+F LKAC + G E+H ++K
Sbjct: 131 NALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVK 190
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN-SVVFPDVVTWTTIISGLSKCGFHKEAID 153
G FI N+L+ Y + +A ++F+ S D V W +I+S S G E +
Sbjct: 191 LGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQ 250
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + + N+ T+VS L+AC KLGK IHA L++ + + + NA++
Sbjct: 251 LFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALI 306
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+K Q+ + A+ + M+ + + T + A G+E+HA+VIK
Sbjct: 334 NSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIK 393
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ + N+L+ Y + F + D+++WTTII+G + H EA+ +
Sbjct: 394 HGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQL 453
Query: 155 FCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + K + L S+L ACS L S + K IH H LR
Sbjct: 454 FRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILR 494
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ACS+ + EIH H+++ G L D IQN L+ Y +++ A ++F S+ DV
Sbjct: 473 LRACSVLKSMLIVKEIHCHILRKG-LIDTVIQNELVDVYGKCRNMGYASRVFESIKGKDV 531
Query: 133 VTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT++IS + G EA+++F + ++ L+ +LSA +SL + K G+ IH +
Sbjct: 532 VSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGY 591
Query: 190 SLR 192
LR
Sbjct: 592 LLR 594
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+KG EIH ++++ G + I +++ Y D+ SA +F+ + ++ +T++I+
Sbjct: 583 KKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAY 642
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G K ++++F + +V P+ + +++L ACS G
Sbjct: 643 GMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAG 681
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKG 85
P + +L L Q+ +A+ L++ M CP + + + + ALKAC + + G
Sbjct: 126 PDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYG 185
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H IK G D F+ NSL+ Y +D+ A ++F + +VV+WT++ISG +
Sbjct: 186 RSLHCDAIKVGGA-DGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQN 244
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
GF + + +F + +V P+ T+ +V++ACS+L G+ +H ++ +N +
Sbjct: 245 GFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFIS 304
Query: 203 NAVLD 207
A+LD
Sbjct: 305 AALLD 309
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 11/189 (5%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHAH 82
+IP ++++ +++ Q+ + + L+NKM N P S YT + ACS
Sbjct: 225 RIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPS--EYTIATVITACSALFGL 282
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+G +H VIK G + + FI +LL YV ++ A +F+ + + D+V WTT+I G
Sbjct: 283 HQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGY 342
Query: 143 SKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENN 198
++ G +A+ +F ++ PN+ T +VLSA + L LGK+IH +++ L E N
Sbjct: 343 TQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYN 402
Query: 199 IILDNAVLD 207
++ NA++D
Sbjct: 403 VV-GNALVD 410
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ TQ+ P +A+ L+ + N T L A + G IH +K
Sbjct: 337 TMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKL 396
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + + N+L+ Y + + A +IF + DVV W ++ISG ++ +A+ +F
Sbjct: 397 GLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLF 456
Query: 156 CGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++ P+A ++V+ LSA LG +GK+IH +++++ +NI +D A+L+
Sbjct: 457 KQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNL 512
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +++ +A+ L+ +M SS + + AL A G IH + +K
Sbjct: 437 NSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVK 496
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + +I++ +LL+ Y D+ SA ++F+ + + VTW +I G G +I +
Sbjct: 497 HAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHL 556
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + V PN S+LS CS G GK
Sbjct: 557 FGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGK 589
>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial; Flags: Precursor
gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 601
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ + N+++ + ++ P + LY++M+ + TFT +KAC +K
Sbjct: 75 ELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEK 134
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + + +G+ +D+F+ +S+L+ Y+ + A +F + DV+ WTT+++G ++
Sbjct: 135 GEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQ 194
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A++ + + + ++ +L A LG K+G+++H + R N+++
Sbjct: 195 AGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVV 254
Query: 202 DNAVLDF 208
+ +++D
Sbjct: 255 ETSLVDM 261
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ A+ Y +M N + L+A + G +H ++ +
Sbjct: 187 TMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRT 246
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK---EAI 152
G ++ ++ SL+ Y V I A ++F+ ++F V+W ++ISG ++ G EA+
Sbjct: 247 GLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAV 306
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ +P+ TLV VL ACS +GS K G+ +H + L+
Sbjct: 307 VEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKR 347
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS + + G +H +++K H+ D +L+ Y + S+ +IF V
Sbjct: 320 TLVGVLVACSQVGSLKTGRLVHCYILKR-HVLDRVTATALMDMYSKCGALSSSREIFEHV 378
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D+V W T+IS G +E + +F + +++P+ T S+LSA S G + G+
Sbjct: 379 GRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQ 438
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 41/211 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNC----PSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
NT+++ +QSS PQ A+ L+ ML P + + +A LAH G ++H
Sbjct: 92 NTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAH---DGAQLHG 148
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC----- 145
+IK G D FI+N++L+ Y T + A +IFN + DVV+W ++I GL+KC
Sbjct: 149 RIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDE 208
Query: 146 --------------------------GFHKEAIDMFCGID---VKPNANTLVSVLSACSS 176
G KEA+ +F + ++P+ T+VS+L+A +
Sbjct: 209 SRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQ 268
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+G+ + G IH + +N + N I+ A++D
Sbjct: 269 IGALRQGVWIHEYIKKNNLQLNAIVVTAIID 299
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 28 IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
+ P N+++ ++ + A+ L+ KM + +T L A + A ++G+
Sbjct: 218 VKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVW 277
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH ++ K + + +++ Y I +A Q+F + + +W ++I GL+ G
Sbjct: 278 IHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGC 337
Query: 148 HKEAIDMFCGID---VKPNANTLVSVLSAC 174
KEAI +F ++ +KP+ + ++VL+AC
Sbjct: 338 EKEAILVFKMLESSSLKPDCISFMAVLTAC 367
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ HAH+IK G + F + +L F + + ++ A+ +F + P++ +W T+I G S+
Sbjct: 42 QFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQS 101
Query: 146 GFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ A IDM V+P T S+ A S LG G +H ++
Sbjct: 102 SNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIK 152
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 12/148 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGL--EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
N YTF+ L AC+ G+ +HA +K G D+F+++SL+ YV + D+ +
Sbjct: 170 NAYTFSSVLGACT-----TPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRR 224
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
+F+ +V D+V W +II+G ++ G AI++F + N TL SVL AC+ +
Sbjct: 225 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVM 284
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ G+ +HAH L+ + ++IL NA+LD
Sbjct: 285 LEAGRQVHAHVLK--YDRDLILHNALLD 310
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ QS AI L+ +M + S N T T L+AC+ + G ++HAHV
Sbjct: 236 VWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHV 295
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+LL Y + A +F+ + DV++W+T++SGL++ G EA+
Sbjct: 296 LKYD--RDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEAL 353
Query: 153 ---DMFCGIDVKPNANTLVSVLSACSSLG 178
D+ V PN T+V VL ACS G
Sbjct: 354 RVFDLMKSQGVAPNHVTMVGVLFACSHAG 382
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HD----IFIQNSLLHFYVTVKDIFSAHQ 122
+ T+ +K C G IH HV +G L HD +F+ NSL Y + A +
Sbjct: 66 SLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALR 125
Query: 123 IFNSVVFPDVVTWTTIISGLSKC-GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+F+ + +VVTWTT+++ L+ G +EA+ + V PNA T SVL AC++ G
Sbjct: 126 MFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPG 185
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ A+HA +++ ++++ + ++++D
Sbjct: 186 ---MLTAVHASTVKAGLDSDVFVRSSLID 211
>gi|255542944|ref|XP_002512535.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548496|gb|EEF49987.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 387
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 4/185 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I++ TL+ T + ++ +ML N Y+F+ A++AC+ +H G
Sbjct: 122 IEVKNAVSWTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSHNFG 181
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA VIK+G + + NS+L Y + A+Q F+ + D++TW TII+G +
Sbjct: 182 KQIHAAVIKHGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGYERS 241
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
EA+ +F + + P+ NT SV +AC++L G+ +H ++ + ++IL
Sbjct: 242 D-SIEALFIFSEMKLNGFDPDCNTFTSVTAACANLAVLSCGQQVHGGIIQKGLDKDLILA 300
Query: 203 NAVLD 207
NA++D
Sbjct: 301 NALID 305
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 173
+ A +F+ ++ DVV WT +I+G + C H A MFC + ++ PNA T+ SVL A
Sbjct: 10 VREARNVFDEMLERDVVAWTVMIAGYASCNEHAYAWSMFCDMVASEMNPNAFTISSVLKA 69
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C + S G +H ++++ E +I +DNA++D
Sbjct: 70 CKGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMD 103
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A ++ M+ + N +T + LKAC + G +H IK+G IF+ N+L+
Sbjct: 44 AWSMFCDMVASEMNPNAFTISSVLKACKGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMD 103
Query: 110 FYVT-VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y T + A +F + + V+WTT+I+G + G + +F + + + N
Sbjct: 104 AYATCCVSMREACLVFCGIEVKNAVSWTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPY 163
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + AC+S+GS GK IHA +++ E ++ + N++LD
Sbjct: 164 SFSIAVRACASIGSHNFGKQIHAAVIKHGCEFSLPVMNSILD 205
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TFT AC+ G ++H +I+ G D+ + N+L+ Y I + +IF+ +
Sbjct: 264 TFTSVTAACANLAVLSCGQQVHGGIIQKGLDKDLILANALIDMYAKCGIITDSRKIFSEL 323
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++V+WT+++ G GF +E +++F + +KP+ ++VLSACS G
Sbjct: 324 SCKNLVSWTSMMIGYGAHGFGREVVELFDEMVESGIKPDHIAFMAVLSACSHAG 377
>gi|255564188|ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger, putative [Ricinus communis]
Length = 1015
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 47/240 (19%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNA-IPLYNKMLNCPSSY 64
+ S PTL+F + + NT+L+ Q+S + I +Y +M
Sbjct: 29 ISSAHPTLNFAH---------QTLESFTWNTILRFHVQASVRTHPPISVYLRMRYHGVKP 79
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TF L++ G +IH + +G +HD F+Q SL++ Y + + A QIF
Sbjct: 80 DFHTFPFLLQSFHSQPHLVSGKQIHTQIHHFGLVHDSFVQTSLINMYSSCGNFSFARQIF 139
Query: 125 NSVVFPD-------------------------------VVTWTTIISGLSKCGFHKEAID 153
+ + PD V+TW+ +I+G KCG +KEA+
Sbjct: 140 DEIAQPDLPSWNSIINASVKVGLVDVARGLFDVMPERNVITWSCMINGFVKCGEYKEALA 199
Query: 154 MFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + DVKPN T+ SVLSAC LG+ + GK HA+ + + +I+L +++D
Sbjct: 200 LFREMQMLEVRDVKPNEFTMSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVLGTSLID 259
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T + L AC A + G HA++ K DI + SL+ Y I A +F
Sbjct: 215 NEFTMSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVLGTSLIDMYAKCGSIDRARLVF 274
Query: 125 NSV-VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
+++ DV+ W+ +ISGL+ G+ +E +++F + ++PN T ++VL AC
Sbjct: 275 DNLGSNKDVMAWSAMISGLAMHGYGEEGLELFSKMVNQGLRPNNVTFLAVLYAC 328
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 11/145 (7%)
Query: 22 HAQII--KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-------HYTFT 70
HA+++ +IP P + NTL++ S P++A+ +Y +M + + TF
Sbjct: 60 HARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFP 119
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L+AC+ A + G ++HAHV+K G D F++N+L+ + T+ D+ +A +F+
Sbjct: 120 FVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARE 179
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMF 155
D V W+ +ISG ++ G A ++F
Sbjct: 180 DAVAWSAMISGFARRGDIGAARELF 204
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
+ D+ N ++ Y + D+ A ++F+ DVV+W +ISG +CG K+A+++F
Sbjct: 209 VKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQ 268
Query: 156 -CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ KP+ T++S+LSAC+ G G+ +H
Sbjct: 269 MQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + + A+ L+ +M + T L AC+ + G +H +
Sbjct: 247 NAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFL-- 304
Query: 95 YGHLHDI----FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
G I + N+L+ Y + SA ++F + +V TW +II GL+ G E
Sbjct: 305 SGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATE 364
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+I +F + +VKP+ T V+VL+ACS G
Sbjct: 365 SIAVFRKMLQGNVKPDEITFVAVLAACSHGG 395
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVTWTTIISGLSK 144
++HA ++ G L D L+ +AH +F+ + PD + T+I G +
Sbjct: 26 QVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAH 85
Query: 145 CGFHKEAIDMFCGI----------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
++A+ ++ + ++P+ T VL AC+++G+ + G +HAH ++
Sbjct: 86 SDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAG 145
Query: 195 NENNIILDNAVL 206
E++ + NA++
Sbjct: 146 CESDAFVRNALI 157
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 11/145 (7%)
Query: 22 HAQII--KIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-------HYTFT 70
HA+++ +IP P + NTL++ S P++A+ +Y +M + + TF
Sbjct: 60 HARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFP 119
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L+AC+ A + G ++HAHV+K G D F++N+L+ + T+ D+ +A +F+
Sbjct: 120 FVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARE 179
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMF 155
D V W+ +ISG ++ G A ++F
Sbjct: 180 DAVAWSAMISGFARRGDIGAARELF 204
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
+ D+ N ++ Y + D+ A ++F+ DVV+W +ISG +CG K+A+++F
Sbjct: 209 VKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQ 268
Query: 156 -CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ KP+ T++S+LSAC+ G G+ +H
Sbjct: 269 MQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + + A+ L+ +M + T L AC+ + G +H +
Sbjct: 247 NAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFL-- 304
Query: 95 YGHLHDI----FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
G I + N+L+ Y + SA ++F + +V TW +II GL+ G E
Sbjct: 305 SGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATE 364
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+I +F + +VKP+ T V+VL+ACS G
Sbjct: 365 SIAVFRKMLQGNVKPDEITFVAVLAACSHGG 395
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVTWTTIISGLSK 144
++HA ++ G L D L+ +AH +F+ + PD + T+I G +
Sbjct: 26 QVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAH 85
Query: 145 CGFHKEAIDMFCGI----------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
++A+ ++ + ++P+ T VL AC+++G+ + G +HAH ++
Sbjct: 86 SDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAG 145
Query: 195 NENNIILDNAVL 206
E++ + NA++
Sbjct: 146 CESDAFVRNALI 157
>gi|414864686|tpg|DAA43243.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 484
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
Q AI L+ ++LN P +++T T + A L + ++ ++H+++IK G+ I N++
Sbjct: 95 QEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSLRQCRQMHSYIIKLGYGDSTLIMNAV 154
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+H Y DI ++ +IF+ + DV++W TII G + G K A++MF + ++PN
Sbjct: 155 MHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKTALEMFDEMKCNGIEPNE 214
Query: 165 NTLVSVLSACSSLGSRKLG 183
+T VSVL+ACS G G
Sbjct: 215 STFVSVLTACSVSGLETEG 233
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC + G +HA+V++ L + ++ +LL Y V + S+ +IF + V
Sbjct: 19 LAACGQTESSLYGRSVHAYVVRRHFLPHVVLETALLEMYGNVGKVESSEKIFGQMTEKTV 78
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
VTW +I+ ++EAI +F + + P+ T+ +V+ A LGS + + +H++
Sbjct: 79 VTWNNMIAAYIYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSLRQCRQMHSY 138
Query: 190 SLRNLNENNIILDNAVL 206
++ ++ ++ NAV+
Sbjct: 139 IIKLGYGDSTLIMNAVM 155
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 20/206 (9%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL-----------------NTLLKLLTQSSTPQNAIPLYNK 56
+ +Q QIHA IIK H L N ++ T+ + P+NA+ +Y +
Sbjct: 55 TLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQ 114
Query: 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116
+ +++ LKAC Q G EIH V+K G D+F+ N+L+ Y
Sbjct: 115 LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECAC 174
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 173
+ A +F+ ++ DVV+W+T+I LS+ A+++ ++ V+P+ +VS+++
Sbjct: 175 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 234
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNI 199
+ + ++GKA+HA+ +RN N ++
Sbjct: 235 FADTANMRMGKAMHAYVIRNSNNEHM 260
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I +L Q++ A L+++M T L C++A A G +H+++
Sbjct: 326 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI 385
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K D + +L+ Y DI +A ++F + D+ W II+G + G+ +EA+
Sbjct: 386 DKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEAL 445
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
D+F ++ VKPN T + +L ACS G GK +
Sbjct: 446 DIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKL 482
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A +F+S DV+ WT ++S ++ +A ++F + V+P T+VS+LS C+
Sbjct: 312 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAV 371
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ LGK +H++ + E + IL+ A++D
Sbjct: 372 AGALDLGKWVHSYIDKERVEVDCILNTALVD 402
>gi|224079788|ref|XP_002305943.1| predicted protein [Populus trichocarpa]
gi|222848907|gb|EEE86454.1| predicted protein [Populus trichocarpa]
Length = 693
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 4/175 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L L Q+ + A+ + +M N++T+ L ACSL + G +IHA VI G
Sbjct: 213 ILSGLAQNLKLREAVVAFQEMEASGILSNNFTYLSILNACSLILSLDLGRQIHARVIMAG 272
Query: 97 HLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
DI + N+L+ Y+ ++ ++F + PDV++WT++I+GLS+ GFH+ + D +
Sbjct: 273 LEDDIPVGNALVDMYMKCSHEVEDGLRVFEGIESPDVISWTSLIAGLSEHGFHQGSFDSY 332
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ ++PN+ TL +L +C + S +H H ++ +++I + NA++D
Sbjct: 333 MEMTASGLQPNSVTLSIILRSCRAAKSASQLLKLHGHVIKTNADHDIAVSNALVD 387
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 4/173 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L + + A+ ++ +M+ N +TF+ L+ACS G IH VIK+G
Sbjct: 12 ILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDGKCIHGCVIKHG 71
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ + + L+ Y I A ++F+ V DVV+WTT+IS L + G +A+ ++
Sbjct: 72 FESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQAGKWSQALRIYI 131
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ V PN T V VL+A LG K GK +HAH + E N+++ A++
Sbjct: 132 DMIKAGVYPNEFTFVKVLAAAGFLG-LKHGKVVHAHLIVFGVELNLVVKTALV 183
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 4/175 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q+ A+ +Y M+ N +TF + L A + G +HAH+I +
Sbjct: 112 TMISSLVQAGKWSQALRIYIDMIKAGVYPNEFTFVKVLAAAGFL-GLKHGKVVHAHLIVF 170
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G ++ ++ +L+H Y + + A +I D WT I+SGL++ +EA+ F
Sbjct: 171 GVELNLVVKTALVHMYSKCQRMDDAVRISKLTPESDRFLWTAILSGLAQNLKLREAVVAF 230
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ + N T +S+L+ACS + S LG+ IHA + E++I + NA++D
Sbjct: 231 QEMEASGILSNNFTYLSILNACSLILSLDLGRQIHARVIMAGLEDDIPVGNALVD 285
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 95/186 (51%), Gaps = 5/186 (2%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P +++ +L+ L++ Q + Y +M N T + L++C A + +
Sbjct: 304 IESPDVISWTSLIAGLSEHGFHQGSFDSYMEMTASGLQPNSVTLSIILRSCRAAKSASQL 363
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L++H HVIK HDI + N+L+ Y + + A + ++ D +T+T + + L++
Sbjct: 364 LKLHGHVIKTNADHDIAVSNALVDAYAGNERVDDAWHLIRNMSQRDALTYTGLATRLNQM 423
Query: 146 GFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G H+ A I+ D+K + ++ LSA + L S + G +H++S+++ ++I +
Sbjct: 424 GHHEMALHVINHMFNDDIKMDGYSMAGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVS 483
Query: 203 NAVLDF 208
N ++ F
Sbjct: 484 NGLVSF 489
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q + A+ + N M N + Y+ L A + ++ + G+++H++ +K G
Sbjct: 420 LNQMGHHEMALHVINHMFNDDIKMDGYSMAGFLSASAGLNSVETGMQLHSYSVKSGLGSS 479
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
I + N L+ FY A + F + PD+V+W +IS L+ G A+ F +
Sbjct: 480 ISVSNGLVSFYGKCGLTRDAERAFAEIREPDIVSWNGLISVLASYGHISSALSAFDDMRL 539
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLG 183
VKP++ T + VL C+ G +G
Sbjct: 540 TGVKPDSVTFLLVLFTCTHCGLVDMG 565
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
DVV+WT I+S K H+EA+ MF G PN T SVL ACS+LG GK IH
Sbjct: 5 DVVSWTGILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDGKCIH 64
Query: 188 AHSLRNLNENNIILDNAVLDF 208
+++ E+N IL + ++D
Sbjct: 65 GCVIKHGFESNQILGSVLIDL 85
>gi|357167647|ref|XP_003581265.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g08490-like [Brachypodium
distachyon]
Length = 929
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVI 93
N+++ +++ + A+ L+ +M + N+ T L CS + H G E+H V
Sbjct: 263 NSIIAGHSENGLFKEALALFGQMTSDKCLPNYSTVANILPVCSFMEHGKYYGKEVHGFVF 322
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G DI + N+L+ Y V ++ +A IF S+ D++TW TIISG G+H +D
Sbjct: 323 RVGLYVDISVCNALMTHYSKVYEMRAAESIFRSMNTRDIITWNTIISGYLMNGYHSRVLD 382
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+F + P++ +L+S+L+AC+ +G K G +H + R+
Sbjct: 383 LFHRLLSTGMTPDSVSLISLLTACAQVGDAKGGMGVHGYIFRH 425
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNC---PSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N L+ +++ + L+ M+ C S T + C+ + G+ IH +
Sbjct: 156 NILITGSSRAGYFDDVFDLFRSMVACGADESMPTAVTVAVVIPVCAKLRVLRAGMSIHGY 215
Query: 92 VIKYGHLHDIFIQNSLLHFYV------TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
V+K G D N+L+ Y T+ D AH+ F+S+ DVV+W +II+G S+
Sbjct: 216 VVKTGLESDTLCGNALISLYAKCGGSGTMDD---AHRAFSSIGCKDVVSWNSIIAGHSEN 272
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRK-LGKAIHAHSLR 192
G KEA+ +F + PN +T+ ++L CS + K GK +H R
Sbjct: 273 GLFKEALALFGQMTSDKCLPNYSTVANILPVCSFMEHGKYYGKEVHGFVFR 323
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVIKY 95
LL+ T + +I L ML + A+K+ S L G +H V++
Sbjct: 56 LLRARTANGDHSGSISLLRGMLGRGLRPDRLALAAAIKSASALRDGESLGRCLHGFVVRT 115
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
GH + + +++ Y + A +F+ + PD V W +I+G S+ G+ + D+F
Sbjct: 116 GHAAGVAVAKAVMDMYGRCGTLADARLVFDEMSCPDTVCWNILITGSSRAGYFDDVFDLF 175
Query: 156 -----CGIDVK-PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
CG D P A T+ V+ C+ L + G +IH + ++ E++ + NA++
Sbjct: 176 RSMVACGADESMPTAVTVAVVIPVCAKLRVLRAGMSIHGYVVKTGLESDTLCGNALISL 234
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++++ Q+ A L+ + L CP + + T L AC Q + H ++++
Sbjct: 600 NLMIQVYAQNGMCDQAFSLF-RQLQCPDTI---SITNILLACIHLSLVQLVRQCHGYMLR 655
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L DI ++ SLL Y +I A+ +F D+VT+T +I G + G +EA+++
Sbjct: 656 -ASLEDIHLEGSLLDAYSKCGNITDAYNLFQVSPTKDLVTFTAMIGGYAMHGMAEEAVEL 714
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
F + + P+ L ++LSACS G
Sbjct: 715 FSEMLTLGIGPDHVVLTALLSACSHAG 741
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + + L++++L+ + + + L AC+ + G+ +H ++ +
Sbjct: 365 NTIISGYLMNGYHSRVLDLFHRLLSTGMTPDSVSLISLLTACAQVGDAKGGMGVHGYIFR 424
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA-- 151
+ LH + + NSL+ FY A F ++ D ++W I+S +K G H E
Sbjct: 425 HPVLHQETSLMNSLVSFYSQCNRFDDALHAFADILSKDSISWNAILSACAKRGKHIEEFF 484
Query: 152 --IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ C + ++ T+++V+ + GS K+ + H +SLR + NA+LD
Sbjct: 485 KLFNEMCHEVTRWDSVTILNVVRVSNLCGSTKMVREAHGYSLRVGYIGETSVANAILD 542
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY- 111
L+N+M + + ++ T ++ +L + + E H + ++ G++ + + N++L Y
Sbjct: 486 LFNEMCHEVTRWDSVTILNVVRVSNLCGSTKMVREAHGYSLRVGYIGETSVANAILDAYA 545
Query: 112 --------------VTVKDIFS----------------AHQIFNSVVFPDVVTWTTIISG 141
+ V++I + A IFN + D TW +I
Sbjct: 546 KCGYPQDADVLFRNLAVRNIVTYNTMISCYLKNSSVEEAEIIFNQMSKKDQTTWNLMIQV 605
Query: 142 LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
++ G +A +F + P+ ++ ++L AC L +L + H + LR E +I L
Sbjct: 606 YAQNGMCDQAFSLFRQLQC-PDTISITNILLACIHLSLVQLVRQCHGYMLRASLE-DIHL 663
Query: 202 DNAVLD 207
+ ++LD
Sbjct: 664 EGSLLD 669
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 36/211 (17%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK--GLEIHA 90
+ N++++ S +P AI Y MLN N+YTF +KAC+ + K G +HA
Sbjct: 351 MYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHA 410
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG--------- 141
HV+ +G D F+ ++L+ FY D+ +A +F+ + DVV WT +I G
Sbjct: 411 HVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEH 470
Query: 142 ----------------------LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 176
S+ G KE + +F + PN + LVSVL+AC+
Sbjct: 471 ARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAH 530
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LG+ G +H+++ + ++N IL A++D
Sbjct: 531 LGALAQGLWVHSYAKQCNFDSNPILATALVD 561
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+ +M + N L AC+ A +GL +H++ + + + +L+ Y
Sbjct: 505 LFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYS 564
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
+ SA F + D W +ISG++ G +++++F + +P T V+
Sbjct: 565 KCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVA 624
Query: 170 VLSACS 175
VL+AC+
Sbjct: 625 VLTACT 630
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF+ + C+ + G ++HAHV+ G ++ + + NS++ Y ++ S ++F
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVF 376
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRK 181
S+ F D++TW+TII+ S+ G+ +EA + + KPN L SVLS C S+ +
Sbjct: 377 CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILE 436
Query: 182 LGKAIHAHSL 191
GK +HAH L
Sbjct: 437 QGKQLHAHVL 446
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 44 SSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
SS A+ L++KM L + + + LK C L + G +H +K G ++ +F
Sbjct: 93 SSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVF 152
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ ++LL Y+ + +I + ++F+ + + VTWT +I+GL + G+ + + F G+
Sbjct: 153 VGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDN 203
V+ ++ L A + G+ G++IH +L+ +EN+ + ++
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANS 257
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ +Q + A ++M + N + L C ++G ++HAHV+
Sbjct: 388 STIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS 447
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++L+ Y I A +IF D+++WT +ISG ++ G +EAI++
Sbjct: 448 VGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIEL 507
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLG 183
F I ++P++ T + VL+ACS G LG
Sbjct: 508 FENIQKVGLRPDSVTFIGVLTACSHAGMVDLG 539
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L ++ + + ++ M Y+ Y + ALKA + + A G IH +K G +
Sbjct: 192 LVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDEN 251
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS-----GLSKCGFHKEAIDMF 155
F+ NSL Y + F + DVV+WTTI++ G CG +A
Sbjct: 252 SFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL--QAFKRM 309
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+V PN T +V+S C++ K G+ +HAH L
Sbjct: 310 RASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVL 345
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q+ + A+ ++ +M + + +TF L AC A +G +IHA+VI+ H +
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+F+ ++L+ Y + I SA +F + +V++WT ++ G + GF +EA+ +F +
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
V+P+ TL SV+S+C++L S + G H +L + + I + NA++
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALI 413
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 35/194 (18%)
Query: 49 NAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+A+ +Y ML + + N TF+ L CS G +I+ ++K+G D+F+ + L
Sbjct: 120 DAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPL 179
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-- 165
+ Y + I+ A + F+ + +VV T+I+GL +CG +E+ +FCG+ + + +
Sbjct: 180 VDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWT 239
Query: 166 --------------------------------TLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T SVL+AC SL + GK IHA+ +R
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299
Query: 194 LNENNIILDNAVLD 207
+++N+ + +A++D
Sbjct: 300 DHKDNVFVGSALVD 313
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ ++++ +L Q+ + A+ ++ +M + +T + +C+ + ++
Sbjct: 330 RMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEE 389
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + H + G + I + N+L+ Y ++H++F + D V+WT +++G ++
Sbjct: 390 GAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQ 449
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
G E I +F +KP+ T + VLSACS G
Sbjct: 450 FGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAG 486
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
SS N+Y LK C + + ++H ++K + F+ N+L+ Y + ++ AH
Sbjct: 3 SSSNYYA--SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAH 60
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+F+ + P++ +W TI+S SK G + +F
Sbjct: 61 HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIF 94
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 36 TLLKLLTQSSTPQNAIPLYN---KMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAH 91
+LLKL +S A L+ K + P ++ ++ T K +LA+AH H
Sbjct: 10 SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAH--------H 61
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V + ++F N++L Y + + QIFN + F D V+W ISG + G +A
Sbjct: 62 VFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDA 121
Query: 152 IDMFCGI--DVKPNAN--TLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ ++ + D N N T ++L CS LG+ I+ L+
Sbjct: 122 VRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILK 166
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF+ + C+ + G ++HAHV+ G ++ + + NS++ Y ++ S ++F
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVF 376
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRK 181
S+ F D++TW+TII+ S+ G+ +EA + + KPN L SVLS C S+ +
Sbjct: 377 CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILE 436
Query: 182 LGKAIHAHSL 191
GK +HAH L
Sbjct: 437 QGKQLHAHVL 446
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 44 SSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
SS A+ L++KM L + + + LK C L + G +H +K G ++ +F
Sbjct: 93 SSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVF 152
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ ++LL Y+ + +I + ++F+ + + VTWT +I+GL + G+ + + F G+
Sbjct: 153 VGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDN 203
V+ ++ L A + G+ G++IH +L+ +EN+ + ++
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANS 257
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ +Q + A ++M + N + L C ++G ++HAHV+
Sbjct: 388 STIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS 447
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++L+ Y I A +IF D+++WT +ISG ++ G +EAI++
Sbjct: 448 VGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIEL 507
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLG 183
F I ++P++ T + VL+ACS G LG
Sbjct: 508 FENIQKVGLRPDSVTFIGVLTACSHAGMVDLG 539
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L ++ + + ++ M Y+ Y + ALKA + + A G IH +K G +
Sbjct: 192 LVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDEN 251
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS-----GLSKCGFHKEAIDMF 155
F+ NSL Y + F + DVV+WTTI++ G CG +A
Sbjct: 252 SFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL--QAFKRM 309
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+V PN T +V+S C++ K G+ +HAH L
Sbjct: 310 RASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVL 345
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 3/160 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ +++ P +A +Y M + +++ LKAC L + G E+H V+K G
Sbjct: 95 LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
D+F+ N+L+ Y V + A +F+ + DVV+W+T+I + G EA+D+
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ VKP+ ++S+ + L KLGKA+HA+ +RN
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRN 254
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+ L+ KML N T +K C A A + G +HA ++ G + + + +
Sbjct: 312 GVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFID 371
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANT 166
Y D+ SA +F+S D++ W+ +IS ++ EA D+F G ++PN T
Sbjct: 372 MYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERT 431
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+VS+L C+ GS ++GK IH++ + + ++IL + +D
Sbjct: 432 MVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVD 472
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ Q++ A ++ M C N T L C+ A + + G IH+++ K
Sbjct: 398 SAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDK 457
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ ++ S + Y DI +AH++F D+ W +ISG + G + A+++
Sbjct: 458 QGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALEL 517
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
F ++ V PN T + L ACS G + GK +
Sbjct: 518 FEEMEALGVTPNDITFIGALHACSHSGLLQEGKRL 552
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 85 GLEIHAHVIKYGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G +HA+V++ G + + +L+ YV +++ A ++F+ + +++WT +I+
Sbjct: 244 GKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAY 303
Query: 143 SKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
C E + +F G + PN T++S++ C + G+ +LGK +HA +LRN ++
Sbjct: 304 IHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSL 363
Query: 200 ILDNAVLD 207
+L A +D
Sbjct: 364 VLATAFID 371
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 15/218 (6%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSST-------PQNAIPLYN 55
L L + +L Q H+QII++ + ++K S + +N I +Y+
Sbjct: 24 LYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGYLRWQLARNCIFMYS 83
Query: 56 KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
+ML+ S N +T+ ++AC + +A ++G +IHAHV+K+G D F N+L+H YV +
Sbjct: 84 RMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQ 143
Query: 116 DIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 170
+ A ++F+++ D V+W +I+ + EA +F + +V + S+
Sbjct: 144 SLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASM 203
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
LSAC+ LG+ + GK IH + ++ E + L V+D
Sbjct: 204 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDM 241
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Query: 13 LSFKQLNQIHAQIIKIPQPHI----LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT 68
++F+ L Q +PQ N ++ QS+ A L+++M + +
Sbjct: 140 VNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFV 199
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
L AC+ A ++G IH ++ K G D + +++ Y + A ++FN +
Sbjct: 200 AASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP 259
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
+ +W +I GL+ G + AI++F ++ V P+ T V+VLSAC+ G + GK
Sbjct: 260 QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGK 318
>gi|14029017|gb|AAK52558.1|AC079853_11 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
Length = 457
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L L +++ A+ L+ +M+ + + T + L C L L +H + +K
Sbjct: 139 NAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVK 198
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++F+ N+++ Y + + ++F+ + D+VTW +IISG + G A++M
Sbjct: 199 HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM 258
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILDNAVLDF 208
FCG+ V P+ TL+S+ SA + G G+++H + + R + +II NA++D
Sbjct: 259 FCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDM 316
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 123
+ +TF L+A A ++HA ++ G L D F +L+H Y+ + A++
Sbjct: 70 DAFTFPPLLRA---AQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + DV W ++SGL + EA+ +F + V +A T+ SVL C LG R
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
L A+H +++++ ++ + + NA++D
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMID 213
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q +A+ ++ M + S + T A + G +H ++++
Sbjct: 240 NSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVR 299
Query: 95 YG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + DI N+++ Y + I +A ++F+S+ D V+W T+I+G + G EAI
Sbjct: 300 RGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIH 359
Query: 154 MFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
++ + +KP T VSVL A S LG+ + G +HA S++
Sbjct: 360 VYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKT 403
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L+Q ++AI L+ +ML + + + L AC+ A+++G ++HAH+IK
Sbjct: 480 TMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKR 539
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D+F N+L++ Y I A F+ + +V+W+ +I GL++ G K A+D+F
Sbjct: 540 QFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLF 599
Query: 156 CGI---DVKPNANTLVSVLSACSSLG 178
+ V PN TL SVLSAC+ G
Sbjct: 600 HRMLDEGVAPNHITLTSVLSACNHAG 625
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ +AI ++ +M+ N + F+ + AC+ + + G ++H V++
Sbjct: 174 NTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR 233
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D+F N+L+ Y + DI A +F + DVV+W ISG G A+++
Sbjct: 234 TGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALEL 293
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ + PN TL SVL AC+ G+ LG+ IH ++
Sbjct: 294 LLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK 334
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T LK+ + + A ++HA K G L D + N L+ Y + A ++F
Sbjct: 408 NRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVF 467
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
D+++ TT+++ LS+C ++AI +F + ++P++ L S+L+AC+SL + +
Sbjct: 468 KESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYE 527
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GK +HAH ++ +++ NA++
Sbjct: 528 QGKQVHAHLIKRQFTSDVFAGNALV 552
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T + LKAC+ A A G +IH ++K D F+ L+ Y + A ++F
Sbjct: 305 NVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVF 364
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGS 179
+ + D++ W +ISG S G H E + +F G+D+ N TL SVL + +S +
Sbjct: 365 DFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEA 424
Query: 180 RKLGKAIHA 188
+ +HA
Sbjct: 425 ICHTRQVHA 433
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 16/192 (8%)
Query: 27 KIPQP-HI-LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P H+ ++L+ + + P++A+ + M N + LK A +
Sbjct: 62 EIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKC---APDVRF 118
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF----PDVVTWTTIIS 140
G ++HA + +HD+F+ N+L+ Y + A ++F+ V + V+W T+IS
Sbjct: 119 GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMIS 178
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL--GKAIHAHSLRNLN 195
K +AI +F + +PN V++AC+ GSR L G+ +H +R
Sbjct: 179 AYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACT--GSRDLEAGRQVHGAVVRTGY 236
Query: 196 ENNIILDNAVLD 207
E ++ NA++D
Sbjct: 237 EKDVFTANALVD 248
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F L+ + +P + N ++K+ + A+ +Y+ M + N+YT+
Sbjct: 65 FSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVYDAMRWRGITPNYYTYPFV 124
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKAC A +KG IH H +K G D+F+ N+L+ FY +D+ + ++F+ + D+
Sbjct: 125 LKACGAEGASKKGRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDI 184
Query: 133 VTWTTIISGLSKCGFHKEAI----DMFCGIDV-KPNANTLVSVLSACSSLGSRKLGKAIH 187
V+W ++ISG + G+ +AI DM V P+ T V+VL A + G IH
Sbjct: 185 VSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIH 244
Query: 188 AHSLRNLNENNIILDNAV 205
+ ++ + LD+AV
Sbjct: 245 CYIVK----TRMGLDSAV 258
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ + +T+ L C +K HA V+ GH D FI L+ Y ++ A ++F
Sbjct: 19 DSFYYTELLNLCKTTDNVKKA---HAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVF 75
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+++ PDV +I + EA+ ++ + + PN T VL AC + G+ K
Sbjct: 76 DNLSEPDVFCCNVVIKVYANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASK 135
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IH H+++ + ++ + NA++ F
Sbjct: 136 KGRVIHGHAVKCGMDLDLFVGNALVAF 162
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAH 82
+IP I+ N+++ T + +AI L+ ML S +H TF L A + A
Sbjct: 178 EIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADI 237
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G IH +++K D + L+ Y + A IF+ + V+ W+ II
Sbjct: 238 HAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCY 297
Query: 143 SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
G +EA+ +F G ++P+ + +LSACS G
Sbjct: 298 GTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAG 336
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 52/197 (26%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+QL +PQ ++ N ++ Q+ +A L+N+M++ + TFT L
Sbjct: 160 RQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFL 219
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
+ + + + ++ EIH +++++G + D+++ ++L+ Y +D A ++FN D+V
Sbjct: 220 PSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIV 279
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+T +ISG G +K+A+++F + K PNA T S+L AC+ L + KLG+ +H +
Sbjct: 280 IYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYI 339
Query: 191 LRNLNENNIILDNAVLD 207
++N E + +A+++
Sbjct: 340 IKNELEEKCPVGSAIMN 356
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ ++ +L N TF+ L AC+ A + G E+H ++IK + +++
Sbjct: 295 KDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAI 354
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--CGID-VKPNA 164
++ Y + AH IF + D + W +II+ S+ G +EAI +F G++ VK +
Sbjct: 355 MNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDC 414
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T+ + LSAC+++ + GK IH ++ E+++ +A+++
Sbjct: 415 VTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALIN 457
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q P+ AI L+ +M Y+ T + AL AC+ A G EIH +IK
Sbjct: 383 NSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIK 442
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F ++L++ Y + A +FN + + V W +II+ G+ +++ +
Sbjct: 443 GAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLAL 502
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
F + ++P+ T +++LS+C G + G
Sbjct: 503 FHNMLEEGIQPDHITFLTILSSCGHAGQVEDG 534
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116
ML C + YTF +K C+ + + G I +++ G D+F+ +SL+ Y
Sbjct: 1 MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 173
I A + F+ ++ D V W +I+G +CG AI +F + + KP++ T VLS
Sbjct: 61 IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120
Query: 174 CSSLGSRKLGKAIHAHSLRN 193
S + G+ +H +R+
Sbjct: 121 SCSEAMVEYGRQLHGLVVRS 140
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK-ACSLAHAHQKGLEIHAHVI 93
N ++ Q +AI L+ M++ + + TF L +CS A + G ++H V+
Sbjct: 80 NVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMV-EYGRQLHGLVV 138
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ G + N+L+ Y + + A ++F+ + D+V W +I G + GF +A
Sbjct: 139 RSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASM 198
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+F +KP++ T S L + + S K K IH + +R+ ++ L++A++D
Sbjct: 199 LFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDL 256
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ L+ ML + + T L A + + ++G E+H ++I+
Sbjct: 312 NGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIR 371
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D F+ ++L+ Y +D+ +A ++++ DVV +T+ISG G ++A+ M
Sbjct: 372 NCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQM 431
Query: 155 F------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F C +KPNA T+ SVL AC+S+ + LG+ IH + LRN E +++A++D
Sbjct: 432 FRYLLEQC---IKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMD 487
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++ +L N T L AC+ A G EIH +V++ + +++++L
Sbjct: 426 EKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESAL 485
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNA 164
+ Y + +H IF+ + D VTW ++IS S+ G +EA+D+F C +K N
Sbjct: 486 MDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNN 545
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T+ S LSAC+SL + GK IH ++ + +I ++A++D
Sbjct: 546 VTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALID 588
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ M N T L C+ G+++H+ +K G ++ + N+LL
Sbjct: 226 AVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLS 285
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + + A ++F + D+VTW +ISG + G EA+ +FC + +P++ T
Sbjct: 286 MYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVT 345
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LVS+L A + L K GK +H + +RN + L +A++D
Sbjct: 346 LVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVD 386
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ PQ A+ L+ +M YN+ T + AL AC+ A G EIH +IK
Sbjct: 514 NSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIK 573
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF +++L+ Y ++ A ++F + + V+W +IIS G KE++
Sbjct: 574 GPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSF 633
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
+ KP+ T ++++SAC+ G
Sbjct: 634 LHRMQEEGYKPDHVTFLALISACAHAG 660
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
N L++ T + A+ Y KM P+ S + +T +K+C+ A G +H
Sbjct: 108 NWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTA 167
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G D+++ ++L+ Y + A F+ + + D V W ++ G K G A+
Sbjct: 168 RATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAV 227
Query: 153 DMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + V +PN TL LS C++ G +H+ +++ E + + N +L
Sbjct: 228 RLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLL 284
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSV-- 127
L+ C A GL+IHA + G L + + + LL YV + A +F+++
Sbjct: 39 LRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPR 98
Query: 128 -VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRK 181
+ W +I G + G H A+ + + P+A+TL V+ +C++LG+
Sbjct: 99 AAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVS 158
Query: 182 LGKAIH 187
LG+ +H
Sbjct: 159 LGRLVH 164
>gi|212275680|ref|NP_001130323.1| uncharacterized protein LOC100191417 [Zea mays]
gi|194688846|gb|ACF78507.1| unknown [Zea mays]
gi|413945339|gb|AFW77988.1| hypothetical protein ZEAMMB73_191992 [Zea mays]
Length = 401
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
LN+LL L +S P A+ + ML +H+T L++C+L A HA +
Sbjct: 12 LNSLLASLARSGRPAQALCTFRDMLARGIPPDHFTLPPVLRSCTLTGAAGLASTSHALAV 71
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G ++F+ ++L+ Y + ++ A ++F+ + D V WT+++S ++ G A+
Sbjct: 72 KLGAQENLFVASALVLCYAGLSNLPDARRLFDGMRERDAVLWTSMLSAYAQGGEPDAAMR 131
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + ++ +A ++S+L AC LG R+ G+++H +R + L NA++D
Sbjct: 132 FFGSMVAAGMELDAVVMISLLLACGQLGWRRHGRSVHGCCIRRFLGMPLPLGNALVDM 189
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 3/157 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++L Q P A+ + M+ + L AC + G +H
Sbjct: 112 LWTSMLSAYAQGGEPDAAMRFFGSMVAAGMELDAVVMISLLLACGQLGWRRHGRSVHGCC 171
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I+ + + N+L+ YV D A ++F + DV++W+ +I G G A+
Sbjct: 172 IRRFLGMPLPLGNALVDMYVKCGDFAFAQRVFVGMPRRDVISWSALILGHGLNGRSDVAL 231
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+F ++PN+ T + LSAC+ G G AI
Sbjct: 232 GLFDRMSAEGIRPNSVTFLGALSACAHSGMVDKGYAI 268
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 93/167 (55%), Gaps = 12/167 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ +Q AI L+++M LNC N TF A++ACS +KG +H +I
Sbjct: 471 NSMICGFSQIGNSLEAIRLFDQMYLNC-LDMNEVTFLTAIQACSHMGHLEKGKWLHHKLI 529
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE--- 150
YG D+FI +L+ Y D+ AH++F+S+ VV+W+ +I G CG H +
Sbjct: 530 AYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGG---CGMHGDIDA 586
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
AI +F + ++KPN T +++LSACS G + GK + +S++N
Sbjct: 587 AISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGK-FYFNSMKNF 632
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 3/181 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + L+K S+ AI LYNKM+ + + F+ L+AC+ G E+
Sbjct: 62 PDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEV 121
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +IKYG D ++ SLL Y + + +A ++F+++ D+V+W++IIS G
Sbjct: 122 HGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGES 181
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
E ++MF DV+ ++ T++S+ AC LG +L K++H +R E L++A+
Sbjct: 182 SEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDAL 241
Query: 206 L 206
+
Sbjct: 242 V 242
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH + IK H+ D F+QNSL+ Y + A+ IF+ + VV W ++I G S+
Sbjct: 421 GHQIHGYAIKR-HILDEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQ 479
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G EAI +F + + N T ++ + ACS +G + GK +H + + ++ +
Sbjct: 480 IGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFI 539
Query: 202 DNAVLD 207
D A++D
Sbjct: 540 DTALID 545
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ ++L+ Y D SA +IF+++ + +WT +IS ++ + K+A+ +F +
Sbjct: 237 LNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFK 296
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V PNA T+++VLS+C+ + GK++H +++++++ ++ L A++++
Sbjct: 297 VAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEY 345
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++ +ML + N T L +C+ + ++G +H + +K+ L D + +L
Sbjct: 283 KQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPAL 342
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNA 164
+ +Y + ++ +++ ++++W +IS + G KEA+ +F + + P++
Sbjct: 343 IEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDS 402
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+L S +SAC+++G LG IH ++++
Sbjct: 403 FSLSSSISACANVGLLWLGHQIHGYAIK 430
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H+H++ G HD L+ Y + + S+ +F + PD W +I F
Sbjct: 20 LHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNF 79
Query: 148 HKEAIDMFCGIDVK--PNANTLV-SVLSACSSLGSRKLGKAIHAHSLR 192
EAI ++ + K P ++ + SVL AC+ G+ +G+ +H ++
Sbjct: 80 CGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIK 127
>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g53600, mitochondrial; Flags: Precursor
gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 717
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++KML N YTF+ L A + +GL+IH V+K ++D+ +QNSL
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
+ Y + A++IF+ + P++V++ T+ISG S GF K+A+ +F ++ +PN
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 165 NTLVSVLSACSSLGSRKLG 183
T +++LSAC +G LG
Sbjct: 540 VTFLALLSACVHVGYVDLG 558
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DV 160
+S++H Y + I A +F+ + +V+TWT +I G K GF ++ +F + DV
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
K N+NTL + AC + G IH R E ++ L N+++
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLM 317
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 95/207 (45%), Gaps = 14/207 (6%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
K+ + + +++ +QIH + ++P L N+L+ + ++ A ++ M N S
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ T ++ ++ A++ ++ D+ ++ + +I +
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGK--------DMVSWTDMIKGFSGKGEISKCVE 393
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + D +TWT +IS G+++EA+ F + +V PN+ T SVLSA +SL
Sbjct: 394 LFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLAD 453
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
G IH ++ N++ + N+++
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLV 480
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T KAC +++G +IH V + D+F+ NSL+ Y + + A +F
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D V+W ++I+GL + EA ++F
Sbjct: 334 GVMKNKDSVSWNSLITGLVQRKQISEAYELF 364
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A L+++M++ + TF+ L S ++G EIH ++I+
Sbjct: 318 NGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIR 377
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F++++L+ Y +D+ AH+IF+ D+V T +ISG G + A+++
Sbjct: 378 NGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEI 437
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ N+ TL SVL AC+ L + LGK +H H L+N + + + +A++D
Sbjct: 438 FRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMD 493
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
NA+ ++ +L N T L AC+ A G E+H H++K GH ++ ++++
Sbjct: 433 NALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIM 492
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV 168
Y + AHQ F + D V W ++I+ S+ G +EAID+F + + V
Sbjct: 493 DMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCV 552
Query: 169 SV---LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+ LSAC++L + GK IHA +R +++ ++A++D
Sbjct: 553 SISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALID 594
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L ++ NA ++ +M ++ N TF L C+ G ++H V+
Sbjct: 217 NVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVS 276
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + N+LL Y +F A ++F+ + D+VTW +ISG + GF EA +
Sbjct: 277 SGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCL 336
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F +KP++ T S L S + + GK IH + +RN ++ L +A++D
Sbjct: 337 FHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALID 392
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ P+ AI L+ +M + Y+ + + AL AC+ A G EIHA +++
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 579
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F +++L+ Y ++ A ++F+ + + V+W +II+ G K+++++
Sbjct: 580 GAFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYGNHGRLKDSLNL 639
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
F G+ ++P+ T ++++SAC G ++ + IH
Sbjct: 640 FHGMLGDGIQPDHVTFLAIISACGHAG--QVDEGIH 673
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ T A+ Y KML C + + YTF +KAC ++ G +H +
Sbjct: 116 NWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQF 175
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ +SL+ FY I A +F+ + D V W +++G K G A +
Sbjct: 176 MGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGV 235
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + + PN+ T VLS C+S G +H
Sbjct: 236 FMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHG 272
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ C+ G + HA ++ G ++ + LL YV A IF +
Sbjct: 53 LQTCTDPSGLSHGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCS 112
Query: 133 VTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
W +I G + G A+ + G P+ T V+ AC L S LG+ +H
Sbjct: 113 EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 39/241 (16%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIK---IPQPHILNTLLK-------LLTQSST--------- 46
L+S T SFKQ Q+HA +I + LNT L L++Q+
Sbjct: 66 LQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKN 125
Query: 47 ----------------PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P ++ LY +ML +++T+ LKAC + G +H+
Sbjct: 126 SFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHS 185
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---CGF 147
V+ G DI++ NSLL Y D+ +A +F+ + D+ +W T+ISG +K G
Sbjct: 186 EVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGT 245
Query: 148 HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVL 206
D+ + + TL+ +LSAC+ L + K GK IH +++RN + N N+++
Sbjct: 246 AFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLI 305
Query: 207 D 207
+
Sbjct: 306 E 306
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +++ A +++ M + T L AC+ A ++G IH + ++
Sbjct: 231 NTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVR 290
Query: 95 --YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G+ ++ F NSL+ Y + A ++F V + D V+W ++I G ++ G E++
Sbjct: 291 NSIGN-YNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESL 349
Query: 153 DMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + + P+ T ++VL AC + + + G +IH++ ++ + N I+ A++D
Sbjct: 350 RLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVD 407
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
++ L+ +M S + TF L AC A + G+ IH++++K G + + +L+
Sbjct: 348 SLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVD 407
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + + ++F+ + +V+W+ +++G G +EAI + G+ V P+
Sbjct: 408 MYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGV 467
Query: 167 LVSVLSACSSLGSRKLGKAI 186
S+LSACS G GK I
Sbjct: 468 FTSILSACSHAGLVVEGKEI 487
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
Q + + + L+ P PL + L C + +T T++ K +G ++H
Sbjct: 34 QGDVAQMVERSLSMREHPLQQYPLTS--LQCGALLQSFTNTKSFK---------QGQQLH 82
Query: 90 AHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
AH+I + L ++ ++ L FY + A IF+ +V + W +I G + G
Sbjct: 83 AHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLP 142
Query: 149 KEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+++ +M C + + T VL AC L ++G+ +H+ + E++I + N+
Sbjct: 143 MKSLVLYREMLC-FGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNS 201
Query: 205 VL 206
+L
Sbjct: 202 LL 203
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ + AI L+ +M S Y F+ L AC+ G ++HA V K G +
Sbjct: 266 SQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLET 325
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
++ N+L+ Y + + SA Q+F+ + D V++ ++ISGLS+ G A+++F +
Sbjct: 326 YVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFKKMQLD 385
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+KP+ T+ S+LSAC+S+ S G+ +H+++++ +II++ ++LD
Sbjct: 386 HLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLD 434
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 15/213 (7%)
Query: 4 NGLKSLKPTLS-FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
N L +L L F Q+ ++I K N+L+ L+Q A+ L+ KM
Sbjct: 329 NALVTLYSRLGNFISAQQVFSKI-KCKDEVSYNSLISGLSQQGCSDRALELFKKMQLDHL 387
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ T L AC+ + KG ++H++ IK G DI I+ SLL YV DI +AH+
Sbjct: 388 KPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHK 447
Query: 123 IFNSVVFPDVVTWTTI------ISGLSK--CGFHKEAIDMFCGIDVKPNANTLVSVLSAC 174
F + +VV W + + LSK C F + I+ + PN T S+L C
Sbjct: 448 FFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIE-----GLIPNQFTYPSILRTC 502
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+S G+ LG+ IH+ +++ E N+ + + ++D
Sbjct: 503 TSFGALDLGEQIHSQAIKTGFEFNVYVCSVLID 535
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 92/174 (52%), Gaps = 3/174 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
L+ TQ A+ L+++MLN ++ F+ A+ AC+ A +G +IHA
Sbjct: 563 ALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYIS 622
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G+ D+ I N+L+ Y I A+ F + D ++W ++SG ++ G+ +EA+ +F
Sbjct: 623 GYSEDLSIGNALVSLYARCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIF 682
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ ++K + T S +SA +++ + K GK IHA ++ ++ I + NA++
Sbjct: 683 AQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMKTGFDSEIEVSNALI 736
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M + +TF A+ A + ++G +IHA ++K
Sbjct: 663 NALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMK 722
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +I + N+L+ Y I A + F + + ++W +I+G S+ G EA+++
Sbjct: 723 TGFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMITGYSQHGCGIEAVNL 782
Query: 155 FCG---IDVKPNANTLVSVLSACSSLG 178
F + KPN T V V+SACS +G
Sbjct: 783 FQKMKQVGAKPNHVTFVGVISACSHVG 809
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
LN + +P ++ N +L L + T + L+ +M+ + N T L+A
Sbjct: 138 LNSVVKVFDDMPSRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVNPNEVTVASVLRA 197
Query: 76 CSLAHAHQKGLE-IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
+ +E IHA +I G N L+ Y I SA ++F+ + D V+
Sbjct: 198 YGSGNVAFYYVEQIHASIISRGLGTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVS 257
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
W +IS S+ GF +EAI +FC + + P SVLSAC+ + +G+ +HA
Sbjct: 258 WVAVISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHA 314
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T+ L+ C+ A G +IH+ IK G ++++ + L+ Y + + A I
Sbjct: 491 NQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGIL 550
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT +I+G ++ EA+++F + ++ + S +SAC+ + +
Sbjct: 551 RRLNEEDVVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALS 610
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
G+ IHA S + ++ + NA++
Sbjct: 611 QGQQIHAQSYISGYSEDLSIGNALV 635
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H+ ++K G + + + L+ FY V D+ S ++F+ + ++TW ++SGL
Sbjct: 108 KLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVANK 167
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
+ +F + +V PN T+ SVL A S
Sbjct: 168 TSNRVLGLFAQMVEENVNPNEVTVASVLRAYGS 200
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 65/211 (30%), Positives = 113/211 (53%), Gaps = 12/211 (5%)
Query: 4 NGLKS--LKPTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLN 59
N LKS L PT K N++ QI P+P + N +++ +Q++ P AI YN M +
Sbjct: 734 NLLKSYALSPTNILKA-NELFRQI---PRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYS 789
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
N+ T+ LKAC+ ++ +HA V+K G D+F+ N+L+H Y ++
Sbjct: 790 QALFGNNLTYPFLLKACARI-SNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGF 848
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A ++F+ + D+V+W ++I G +C + E + +F + DVK +A T+V V+ AC+
Sbjct: 849 ARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTV 908
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LG + A+ + N E ++ L N ++D
Sbjct: 909 LGEWGVVDAMIEYIEENKVEVDVYLGNTLID 939
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ +Q+ A+ L+ +M+ + T L AC+ A G +H ++ KY
Sbjct: 998 SMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKY 1057
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
DI++ N+L+ Y + +F + D V+WT++I+GL+ G A+++F
Sbjct: 1058 DVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLF 1117
Query: 156 CGI---DVKPNANTLVSVLSACSSLG 178
+ V+P T V VL AC+ G
Sbjct: 1118 SLMLREGVRPTHGTFVGVLLACAHAG 1143
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 68/107 (63%), Gaps = 5/107 (4%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
N+++ Y ++ +A ++F+ + DV++WT++IS S+ G +A+ +F + VK
Sbjct: 966 NAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVK 1025
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN-NIILDNAVLD 207
P+ T+ SVLSAC+ +G+ +G+A+H + +R + N +I + NA++D
Sbjct: 1026 PDEITVASVLSACAHIGALDVGEAVHEY-IRKYDVNADIYVGNALID 1071
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ L+K + S L+ M + + + T +KAC A ++G +H
Sbjct: 177 LWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLS 236
Query: 93 IKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
I+ + +++ S++ YV + + +A ++F + V +VV WTT+ISG +KC EA
Sbjct: 237 IRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEA 296
Query: 152 IDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
ID+F G + PN TL ++L +CSSLGS + GK++H + +RN
Sbjct: 297 IDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRN 341
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ TL+ + AI L+ +ML NH T L +CS + + G +H ++
Sbjct: 279 MWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYM 338
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I+ G D S + Y +I A ++F+ + +V++W+++I+ G +EA+
Sbjct: 339 IRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEAL 398
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
D F + ++ PN+ T VS+LSACS G+ K G
Sbjct: 399 DCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEG 432
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 9/186 (4%)
Query: 17 QLNQIHAQIIKIP----QPHILNTLLKLLTQSSTP--QNAIPLYNKMLNCPSSYNHYTFT 70
+L+ A +IP H NT+L ++S + + + LYN+M + +
Sbjct: 54 RLDFATASFDRIPCWKRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLV 113
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
A+KAC + G+ IH +K G D ++ SL+ Y + SA ++F+ +
Sbjct: 114 FAIKACVGLGLLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVR 173
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ V W ++ G K E +F + +A TL+ ++ AC ++ + K GK +H
Sbjct: 174 NSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVH 233
Query: 188 AHSLRN 193
S+R
Sbjct: 234 GLSIRR 239
>gi|115453393|ref|NP_001050297.1| Os03g0396200 [Oryza sativa Japonica Group]
gi|113548768|dbj|BAF12211.1| Os03g0396200 [Oryza sativa Japonica Group]
Length = 435
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L L +++ A+ L+ +M+ + + T + L C L L +H + +K
Sbjct: 117 NAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVK 176
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++F+ N+++ Y + + ++F+ + D+VTW +IISG + G A++M
Sbjct: 177 HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM 236
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILDNAVLDF 208
FCG+ V P+ TL+S+ SA + G G+++H + + R + +II NA++D
Sbjct: 237 FCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDM 294
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q +A+ ++ M + S + T A + G +H ++++
Sbjct: 218 NSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVR 277
Query: 95 YG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + DI N+++ Y + I +A ++F+S+ D V+W T+I+G + G EAI
Sbjct: 278 RGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIH 337
Query: 154 MFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
++ + +KP T VSVL A S LG+ + G +HA S++
Sbjct: 338 VYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKT 381
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
D F +L+H Y+ + A++ F+ + DV W ++SGL + EA+ +F +
Sbjct: 81 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 140
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V +A T+ SVL C LG R L A+H +++++ ++ + + NA++D
Sbjct: 141 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMID 191
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ NT+++ + NA+ LY M + +TF+ LKAC+ + G+ IH+ V
Sbjct: 71 LYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLV 130
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K G D+F++ +++ FY + A ++F+ +V +VV+WT +I G + G +EA+
Sbjct: 131 FKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAV 190
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+F G+ ++P+ +V VL AC+ LG + G+ I
Sbjct: 191 DLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWI 227
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ +L + + + L+AC+ + G I + + G ++F+ SL
Sbjct: 187 REAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSL 246
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNA 164
+ Y + A +F+ +V D+V W+ +I G + G +EAI++F ++V+P+
Sbjct: 247 VDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDC 306
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIILDNAVLDF 208
+V LS+C+SLG+ +LG A L N E +N +L +++DF
Sbjct: 307 YAMVGALSSCASLGALELGN--WAKGLMNYEEFLSNPVLGTSLIDF 350
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ AI L+ +M + Y AL +C+ A + G + L + + S
Sbjct: 287 PREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTS 346
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
L+ FY + A ++ + D V + +ISGL+ G A +F + + PN
Sbjct: 347 LIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPN 406
Query: 164 ANTLVSVLSACSSLG 178
+T V +L C+ G
Sbjct: 407 EHTFVGLLCGCTHAG 421
>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
gb|AF151215 and contains multiple PPR PF|01535 repeats
[Arabidopsis thaliana]
Length = 816
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++KML N YTF+ L A + +GL+IH V+K ++D+ +QNSL
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
+ Y + A++IF+ + P++V++ T+ISG S GF K+A+ +F ++ +PN
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 165 NTLVSVLSACSSLGSRKLG 183
T +++LSAC +G LG
Sbjct: 540 VTFLALLSACVHVGYVDLG 558
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DV 160
+S++H Y + I A +F+ + +V+TWT +I G K GF ++ +F + DV
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
K N+NTL + AC + G IH R E ++ L N+++
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLM 317
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 95/207 (45%), Gaps = 14/207 (6%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
K+ + + +++ +QIH + ++P L N+L+ + ++ A ++ M N S
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ T ++ ++ A++ ++ D+ ++ + +I +
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGK--------DMVSWTDMIKGFSGKGEISKCVE 393
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + D +TWT +IS G+++EA+ F + +V PN+ T SVLSA +SL
Sbjct: 394 LFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLAD 453
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
G IH ++ N++ + N+++
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLV 480
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T KAC +++G +IH V + D+F+ NSL+ Y + + A +F
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D V+W ++I+GL + EA ++F
Sbjct: 334 GVMKNKDSVSWNSLITGLVQRKQISEAYELF 364
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+AI L+++M + + YT T + AC+ + + KG ++H++VIK G ++ + N+L+
Sbjct: 655 DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALI 714
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANT 166
+ Y + A +F+ + D+V+W T+I G S+ EA+++F + KP+ T
Sbjct: 715 NMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDIT 774
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLR 192
+ VL AC+ L + G+ IH H LR
Sbjct: 775 MACVLPACAGLAALDKGREIHGHILR 800
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + + ++ L+ KM N YTFT LK + ++ +H +V+K
Sbjct: 439 NLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK 498
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + NSL+ Y + SAH +F+ + PDVV+W ++I+G GF +++
Sbjct: 499 LGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEI 558
Query: 155 FCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + V+ + TLVSVL A +++G+ LG+A+H ++ ++ N +LD
Sbjct: 559 FIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLD 614
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA--LKACSLAHAH 82
KIP I+ NT++ +Q+S P A+ L+ L+ + T A L AC+ A
Sbjct: 732 KIPVKDIVSWNTMIGGYSQNSLPNEALELF---LDMQKQFKPDDITMACVLPACAGLAAL 788
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
KG EIH H+++ G+ D+ + +L+ Y + A +F+ + D+++WT +I+G
Sbjct: 789 DKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGY 848
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
GF EAI F + ++P+ ++ +L+ACS G
Sbjct: 849 GMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSG 887
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 93/200 (46%), Gaps = 5/200 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
F + H ++ +P ++ N+++ + N + ++ +ML + T
Sbjct: 516 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 575
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L A + G +H +K ++ N+LL Y ++ A ++F +
Sbjct: 576 SVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDT 635
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+V+WT+ I+ + G + +AI +F + V+P+ T+ S++ AC+ S G+ +H
Sbjct: 636 TIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 695
Query: 188 AHSLRNLNENNIILDNAVLD 207
++ ++N +N+ + NA+++
Sbjct: 696 SYVIKNGMGSNLPVTNALIN 715
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+NAI L K + N Y L+ C+ + + G +H+ +I G D + L
Sbjct: 353 RNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKL 410
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ YV D+ +IF+ ++ V W ++S +K G +E++ +F + V N
Sbjct: 411 VFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNC 470
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T VL ++LG K K +H + L+
Sbjct: 471 YTFTCVLKCFAALGKVKECKRVHGYVLK 498
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 13/157 (8%)
Query: 64 YNHYTFTQALKACSLAHAHQKGL----------EIHAHVIKYGHLHDIFIQNSLLHFYVT 113
Y H + + C LA +H L +IHA +I G H+ F+ NSL++ YV
Sbjct: 9 YRHLSSNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVY 68
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 170
+ A QIF+ +VV+WT +ISGL+K EAID+F + + KPNA T+ SV
Sbjct: 69 CGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSV 128
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
L A ++LG ++ K++H +R E N+ ++ A++D
Sbjct: 129 LPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVD 165
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + AI L+N M + YT + A Q G IH +I+
Sbjct: 192 NAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR 251
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ +D I+ +L+ YV+ + AH++F+ + DV WT +++G S AI
Sbjct: 252 TGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKH 311
Query: 155 F---CGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F GI ++K ++ L+ +LS+CS G+ + G+ +HA +++ NNI + +AV+D
Sbjct: 312 FNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 48 QNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
AI +NKML + + L +CS + A Q+G +HA IK ++IF+ ++
Sbjct: 306 DRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSA 365
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPN 163
++ Y ++ A + F + DVV W +I+G G+ +AID+F G + P+
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPD 425
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+T VSVL ACS G G I H ++
Sbjct: 426 ESTFVSVLYACSHAGMVYEGLQIFYHMVK 454
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 43/239 (17%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPH-------ILNT---------------------- 36
LK LKP L QIHAQII H ++N
Sbjct: 34 LKDLKP------LQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNV 87
Query: 37 -----LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
L+ L ++ AI ++ +M N T + L A + + +H
Sbjct: 88 VSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCF 147
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ G ++F++ +L+ Y + A Q+F S+ +VV+W I+SG S GF +EA
Sbjct: 148 WVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEA 207
Query: 152 IDMFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
ID+F + K + T++S++ A S+G ++G IH +R EN+ + A++D
Sbjct: 208 IDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMD 266
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 7/189 (3%)
Query: 21 IHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
+ + I P+ + N L+ L++SS P+ I Y ++ + + ++F LKA S
Sbjct: 66 VFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVS 125
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
A +G+E+H K L D F++ + Y + I A +F+ + DVVTW T+I
Sbjct: 126 ALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIE 185
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
+ G EA +F + +V P+ L +++SAC G+ + +AI+ L EN
Sbjct: 186 RYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEF----LIEN 241
Query: 198 NIILDNAVL 206
++ +D +L
Sbjct: 242 DVRMDTHLL 250
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +S PQ A+ ++ +M + + + AC+ K +H+ +
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G ++ I N+L++ Y + + +F + +VV+W+++I+ LS G +A+ +F
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ +V+PN T V VL CS G + GK I A
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 469
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
T L A +A +++ + + ++F+ +++ Y + A IF+
Sbjct: 247 THLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEK 306
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+V WTT+IS + + +EA+ +F C +KP+ ++ SV+SAC++LG K +
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H+ N E+ + ++NA+++
Sbjct: 367 HSCIHVNGLESELSINNALIN 387
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ QS AI L+ +M + S N T T L+AC+ + G ++HAHV
Sbjct: 247 VWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV 306
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+LL Y + A +F+ + DV++W+T+ISGL++ G EA+
Sbjct: 307 LKYE--RDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEAL 364
Query: 153 ---DMFCGIDVKPNANTLVSVLSACSSLG 178
D+ V PN T+V VL ACS G
Sbjct: 365 RVFDLMKSEGVAPNRITMVGVLFACSHAG 393
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF+ L AC +HA +K G D+F+++SL+ Y+ + D+ ++F
Sbjct: 181 NAYTFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVF 237
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ +V D+V W +II+G ++ G AI++F + N TL SVL AC+ + +
Sbjct: 238 DEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLE 297
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +HAH L+ E ++IL NA+LD
Sbjct: 298 AGRQVHAHVLK--YERDLILHNALLD 321
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 15/152 (9%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--------IFIQNSLLHFYVTVKDIFS 119
+ T+ +K C G IH HV +G L IF+ NSL+ Y +
Sbjct: 74 SLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDD 133
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKC-GFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
A ++F+ + +VVTWTT+++ L+ G +EA+ + V PNA T SVL AC
Sbjct: 134 ALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACG 193
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ G + A+HA +++ ++++ + ++++D
Sbjct: 194 TPG---VLAALHASTVKVGLDSDVFVRSSLID 222
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 9/179 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ + + AI LY KML + N +TF LKACS +G EIH + +
Sbjct: 88 NLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKR 147
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++++ +L+ FY + A ++F+ + DVV W ++ISG S H+ + D
Sbjct: 148 LRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFS---LHEGSYDE 204
Query: 155 FCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ DV PN++T+V VL A + + S + GK IH +R ++++ +LD
Sbjct: 205 VARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILD 263
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T ++ C+ G +H + IK G + D+ + N+LL Y I A + FN +
Sbjct: 327 TLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEM 386
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
D V++T IISG + G +E + MF + + P TL SVL AC+ L G
Sbjct: 387 DLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGS 446
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
H +++ + ++ NA++D
Sbjct: 447 CSHCYAIICGFTADTMICNALID 469
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
S N T L A + ++ + G EIH ++ G + D+ + +L Y + I A +
Sbjct: 217 SPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARR 276
Query: 123 IFNSV-VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-----DVKP-NANTLVSVLSACS 175
IF+ + + + VTW+ ++ C F +EA+++FC + DV +A TL +V+ C+
Sbjct: 277 IFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCA 336
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+L G +H +++++ ++++ N +L
Sbjct: 337 NLTDLSTGTCLHCYAIKSGFVLDLMVGNTLL 367
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGH-LHDIFIQN------SLLHFYVTVKDIFSAHQ 122
T L++C + + +G IH H++K H H+ + N L+ Y+ ++ A
Sbjct: 13 TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARH 72
Query: 123 IFNSVVF--PDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSL 177
+F+ + +VV W +I + G ++EAID++ G + PN T VL ACS+L
Sbjct: 73 VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IH R E+N+ + A++DF
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALVDF 163
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 68 TFTQALKACSLAHAHQKGLEI----HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
T L AC AH GL H + I G D I N+L+ Y I +A ++
Sbjct: 428 TLASVLPAC----AHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKV 483
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSR 180
F+ + +V+W T+I G EA+ +F + +KP+ T + ++SACS G
Sbjct: 484 FDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLV 543
Query: 181 KLGK 184
GK
Sbjct: 544 AEGK 547
>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
Length = 839
Score = 86.7 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++KML N YTF+ L A + +GL+IH V+K ++D+ +QNSL
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
+ Y + A++IF+ + P++V++ T+ISG S GF K+A+ +F ++ +PN
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 165 NTLVSVLSACSSLGSRKLG 183
T +++LSAC +G LG
Sbjct: 540 VTFLALLSACVHVGYVDLG 558
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DV 160
+S++H Y + I A +F+ + +V+TWT +I G K GF ++ +F + DV
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
K N+NTL + AC + G IH R E ++ L N+++
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLM 317
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 95/207 (45%), Gaps = 14/207 (6%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
K+ + + +++ +QIH + ++P L N+L+ + ++ A ++ M N S
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ T ++ ++ A++ ++ D+ ++ + +I +
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGK--------DMVSWTDMIKGFSGKGEISKCVE 393
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + D +TWT +IS G+++EA+ F + +V PN+ T SVLSA +SL
Sbjct: 394 LFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLAD 453
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
G IH ++ N++ + N+++
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLV 480
Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T KAC +++G +IH V + D+F+ NSL+ Y + + A +F
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D V+W ++I+GL + EA ++F
Sbjct: 334 GVMKNKDSVSWNSLITGLVQRKQISEAYELF 364
>gi|302764952|ref|XP_002965897.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
gi|300166711|gb|EFJ33317.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
Length = 318
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+ + L+ C+ A Q+G +IH+++ G D + N L+ Y+ + A ++F+ +
Sbjct: 9 TYARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILGNHLIEMYLKCGSLRDAQRMFDEM 68
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
V D + WT++IS S+ G +K A+ +F G VKP+ T V+VL+ C + + + GK
Sbjct: 69 VSRDAILWTSMISAYSERGHYKMALKLFQRMQGESVKPDNVTFVTVLNCCGKMSALQEGK 128
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
IH+ N EN++I+ A+L+
Sbjct: 129 LIHSQLTGNGFENDLIVKTALLNM 152
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 76/139 (54%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M ++ TF L C A Q+G IH+ + G +D+ ++ +LL+
Sbjct: 92 ALKLFQRMQGESVKPDNVTFVTVLNCCGKMSALQEGKLIHSQLTGNGFENDLIVKTALLN 151
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVS 169
Y + A ++F + D++TW ++S + ++EA++++ +++ P+ +T V+
Sbjct: 152 MYGKCGSLTDARKVFEEIQGKDIITWNAMLSVYVQHSAYEEALELYRKMELTPSVSTFVT 211
Query: 170 VLSACSSLGSRKLGKAIHA 188
V++AC+ + + G+ +HA
Sbjct: 212 VINACAGATALEDGRQVHA 230
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L + Q S + A+ LY KM PS TF + AC+ A A + G ++HA V
Sbjct: 178 NAMLSVYVQHSAYEEALELYRKMELTPSVS---TFVTVINACAGATALEDGRQVHAVVTA 234
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + ++LL+ Y + A ++F D V W +IS ++ KEA+ +
Sbjct: 235 RGLETEDAVSSALLNMYGKCGSLEDAAKVFWKRREYDDVAWAHMISFYTQWHRSKEALGL 294
Query: 155 FC-----GIDVKPNANTLVSVLSAC 174
F G+ V A T + LSAC
Sbjct: 295 FRLMRLEGVRVDKFAFT--TTLSAC 317
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 86.3 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 67/247 (27%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P P++ N ++K Q++ P AI Y KM+ + N +T+ KAC+ A A ++G
Sbjct: 90 VPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEG 149
Query: 86 LEIHAHVIKYGHLHDIFIQ-------------------------------NSLLHFYVTV 114
+++HAHVIK G D+ I+ N+++ Y+
Sbjct: 150 VQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKC 209
Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKC----------------------------- 145
++ +A ++F S+ +V +W ++SG++KC
Sbjct: 210 GEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYI 269
Query: 146 --GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
G++KEA+++F + +++P L SVL+AC++LG+ G+ IHA+ N N + +
Sbjct: 270 KGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAV 329
Query: 201 LDNAVLD 207
L A++D
Sbjct: 330 LGTALVD 336
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++N M + + L AC+ A +G IHA+V + D + +L
Sbjct: 275 KEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTAL 334
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y + A +F + +V TW +I GL G ++AI++F + +PN
Sbjct: 335 VDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNG 394
Query: 165 NTLVSVLSACSSLG 178
TL+ VLSAC+ G
Sbjct: 395 ITLLGVLSACAHSG 408
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT--VKDIFSAHQIFNSVVFPDV 132
+ SL H Q +HA ++ GH D ++ +L+ Y ++ A ++F V P+V
Sbjct: 40 STSLHHLKQ----VHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNV 95
Query: 133 VTWTTIISGLSK--------CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ II G + C ++K I +PN T ++ AC++ + + G
Sbjct: 96 FVFNIIIKGCLQNNEPCKAICCYYKMMI-----AHARPNKFTYPTLFKACTAAEAAEEGV 150
Query: 185 AIHAHSLR 192
+HAH ++
Sbjct: 151 QVHAHVIK 158
>gi|242058803|ref|XP_002458547.1| hypothetical protein SORBIDRAFT_03g035530 [Sorghum bicolor]
gi|241930522|gb|EES03667.1| hypothetical protein SORBIDRAFT_03g035530 [Sorghum bicolor]
Length = 483
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 19/209 (9%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSS 63
L+SL P L +P+PH+ N+LL+ L + + +PL+ +
Sbjct: 69 LRSLDPALVL---------FASLPRPHVFVFNSLLRSLPAAPA-CSPLPLFRHFIGLGVR 118
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQ 122
N YTF L + S H +H+ V K G D+ ++N+LL Y D+ A Q
Sbjct: 119 PNRYTFPLMLTSLSSLHELSA---VHSQVAKSGFARDLHVRNALLASYAACDPDLGHAEQ 175
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGS 179
+F+ + PDVV WTT+I+ G A+ F V PN T+VS L AC++ G+
Sbjct: 176 LFDEMPSPDVVAWTTMITAYRNRGRSFHALSTFRRMFAASVAPNRVTMVSALGACAAHGA 235
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G IH + + E +++L A++D
Sbjct: 236 VDTGIWIHQYVQKQGWELDVVLGTALVDM 264
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P P ++ T++ +A+ + +M + N T AL AC+ A
Sbjct: 179 EMPSPDVVAWTTMITAYRNRGRSFHALSTFRRMFAASVAPNRVTMVSALGACAAHGAVDT 238
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+ IH +V K G D+ + +L+ Y + ++F+ + +V TW +II +
Sbjct: 239 GIWIHQYVQKQGWELDVVLGTALVDMYGKCGHVVEGVRVFSEMTERNVCTWNSIIGAFAL 298
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
+ A+ F + V+P+A TL+ VL AC+ G +G+ I
Sbjct: 299 EQNGEMALRWFYRMKADGVRPDAVTLICVLYACTHAGLVDIGRKI 343
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 35/212 (16%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHI---LNTLLKLLTQSSTPQNAIPLYN--- 55
F + LK+ F Q+H Q IK+ I N+L+ + +S T + A +N
Sbjct: 352 FSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILF 411
Query: 56 ---------------KMLNCPSSYNH-----------YTFTQALKACSLAHAHQKGLEIH 89
K L+ S+NH +T+ L + KG +IH
Sbjct: 412 EKNLISYNTAADANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIH 471
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
A ++K G ++ I N+L+ Y + +A Q+FN + + +V+TWT+IISG +K GF
Sbjct: 472 ALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFAT 531
Query: 150 EAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
+A+++F I VKPN T ++VLSACS +G
Sbjct: 532 KALELFYEMLEIGVKPNEVTYIAVLSACSHVG 563
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+A+ L+ ++L + + +T T L AC G ++H+ VI+ G D+F+ +L
Sbjct: 230 DDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTL 289
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + ++ +IFN+++ +V++WT +ISG + +EAI +FC + V PN
Sbjct: 290 VDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNC 349
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T SVL AC+SL +GK +H +++
Sbjct: 350 FTFSSVLKACASLPDFGIGKQLHGQTIK 377
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 24/189 (12%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKACSLAHAHQKGLEIHAH 91
+ ++ +S A+ + ML C + N Y FT L++CS GL I A
Sbjct: 111 SAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAF 170
Query: 92 VIKYGH----------LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
++K G+ L D+F + L DI SA +F+ + ++VTWT +I+
Sbjct: 171 LLKTGYFDSHVCVGCALIDMFTKGGL--------DIQSARMVFDKMQHKNLVTWTLMITR 222
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S+ G +A+D+FC + + P+ TL S+LSAC L LGK +H+ +R+ ++
Sbjct: 223 YSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASD 282
Query: 199 IILDNAVLD 207
+ + ++D
Sbjct: 283 VFVGCTLVD 291
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ QS Q AI L+ ML+ + N +TF+ LKAC+ G ++H IK G
Sbjct: 320 LISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLG 379
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID--- 153
+ NSL++ Y + A + FN + +++++ T +K E+ +
Sbjct: 380 LSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEV 439
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
G+ P T +LS + +G+ G+ IHA +++ N+ ++NA++
Sbjct: 440 EHTGVGASP--FTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALI 490
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q ++ +PLY +L+ S+ +H TF +KAC+ G + HV K G D+
Sbjct: 97 QHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADV 156
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC----- 156
F+ N+ +HF+ + A ++F+ DVV+W T+I G + G +EA+++F
Sbjct: 157 FVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAED 216
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G V+P+ T++ +S C+ +G +LGK +H + L NAV+D
Sbjct: 217 GNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMD 267
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q+ + AI L+++M N T L ACS A + G+ +H H I
Sbjct: 325 NALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVH-HYID 383
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
LH + + SL+ Y +I A +FN + + +TWT++I GL+ G EAI+
Sbjct: 384 RHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIE 443
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLG----SRKLGKAIHA--HSLRNLNENNIILD 202
F + ++P+ T + VLSAC G R+ +HA H R + + ++D
Sbjct: 444 YFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMID 501
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 36/209 (17%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
NTL+ +S P+ A+ L+ ++ ++ + T A+ C+ + G +H V
Sbjct: 191 NTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFV 250
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH---- 148
G + + N+++ YV + A+ +F + V+WTT+I G ++ G
Sbjct: 251 DNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDAR 310
Query: 149 ---------------------------KEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
KEAI +F + V PN T+V++LSACS LG
Sbjct: 311 MLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLG 370
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ ++G +H + R+ ++ L +++D
Sbjct: 371 ALEMGMWVHHYIDRHKLHLSVALGTSLVD 399
>gi|302763041|ref|XP_002964942.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
gi|300167175|gb|EFJ33780.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
Length = 604
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 91/178 (51%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ QS + A+ LY M + T+ AL AC+ KG+EIH+ + +
Sbjct: 254 NSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGVEIHSRITE 313
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F+ ++++ Y ++ +A F + + VTW+ ++ + G+ +EA+D+
Sbjct: 314 SKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQHGYDREALDL 373
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNENNIILDNAVLDF 208
+ + +P+ TL L+ACS +G+ + GKAIH+ +N + L N++L+
Sbjct: 374 YLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNM 431
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 7/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q ++ L+++M + TF + ACS A +KG +
Sbjct: 155 NAMISSYAQHGQASKSLLLFHQMSLEGVKPDARTFVSVIGACSSLQALEKGRAVEEQATS 214
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAID 153
G + +LL Y ++ +A IF+ + + +VV+W ++I+ ++ G +EA++
Sbjct: 215 MGIEEG---RTALLSLYAKCGNLEAARDIFDKLKYRKNVVSWNSMIAAYAQSGRGREALE 271
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ + V+P+ T L AC+S G G IH+ + ++ LD A+++
Sbjct: 272 LYELMKEEGVQPDDITYAGALGACTSYGGSAKGVEIHSRITESKIRTDVFLDTAIVNM 329
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ Q + A+ LY +M++ + T AL ACS A Q+G IH+ +
Sbjct: 355 SAMVGAFIQHGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQA 414
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L + +F+QNSLL+ Y + A+ +F+++ D +W TII G + G E +
Sbjct: 415 TETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTIIVGHAHHGDVDEVLS 474
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+ + V P+ T VL ACS G G++
Sbjct: 475 LHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRS 509
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q + + L+ KM P S T+ L ACS + G E+HA V +
Sbjct: 8 NSMVVAYSQHGHGEEMLELFRKMDVEPDSI---TYASILGACSAMELLELGKEVHARVSR 64
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D + +L++ Y + SA ++F+ + D W +ISGL + G +EA+ +
Sbjct: 65 SRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGL 124
Query: 155 F 155
F
Sbjct: 125 F 125
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 50/78 (64%)
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
D+++W +++ S+ G +E +++F +DV+P++ T S+L ACS++ +LGK +HA
Sbjct: 3 DLISWNSMVVAYSQHGHGEEMLELFRKMDVEPDSITYASILGACSAMELLELGKEVHARV 62
Query: 191 LRNLNENNIILDNAVLDF 208
R+ +++ L A+++
Sbjct: 63 SRSRFKSDPALAAALINM 80
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ + P + N++L Q+ + + A+ ++ +ML TF+ + C + + G
Sbjct: 232 LPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFG 291
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA+VI+ G ++FI +SL+ Y +I AH IF+ + PDVV+WT +I G +
Sbjct: 292 KQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALH 351
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLG 178
G +EA+ +F +++ KPN T ++VL+ACS G
Sbjct: 352 GPAREALVLFERMELGNAKPNHITFLAVLTACSHAG 387
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 103/210 (49%), Gaps = 5/210 (2%)
Query: 4 NGLKSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCP 61
G+ S+ T S L + ++ + ++ NTL+ + A+ L KM
Sbjct: 107 TGVTSVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREG 166
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+ +T + L + ++G E+H ++ G +D+F+ +SL+ Y +
Sbjct: 167 FRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSV 226
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
++F+++ D + W ++++G ++ G +EA+ +F + V+P T S++ C +L
Sbjct: 227 KVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLA 286
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S + GK +HA+ +R E+N+ + ++++D
Sbjct: 287 SLRFGKQLHAYVIRGGFEDNVFISSSLIDM 316
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 24/185 (12%)
Query: 48 QNAIPLYNKMLNC--PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
++AI L+ +M C P S + ALK+C+ G +HA I+ G D F N
Sbjct: 31 RDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTAN 90
Query: 106 SLLHFYVTVKDIF-------------------SAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+LL+ Y + + S ++F+ ++ DVV+W T++ G ++ G
Sbjct: 91 ALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEG 150
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
H EA+ + + +P++ TL SVL + K G +H ++RN +N++ + +
Sbjct: 151 RHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGS 210
Query: 204 AVLDF 208
+++D
Sbjct: 211 SLIDM 215
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 15/205 (7%)
Query: 17 QLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+LNQ+ A II+ P P N +++ T+ A+ +Y M S + YT
Sbjct: 74 ELNQLLAHIIRTHFLELYPAPFQWNNIIRSYTRLEAHHYALSIYIAMSRAGVSPDSYTIP 133
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
LKA A A G ++H+ I++G + + ++ + Y + +AH++F F
Sbjct: 134 IVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYSKAGEFQNAHKVFEQNRFR 193
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKA 185
+ +W II GLS+ G KEA+ MF CG + P+ T+VSV SAC SLG L
Sbjct: 194 KLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFE--PDEVTMVSVTSACGSLGHLDLALQ 251
Query: 186 IH--AHSLRNLNENNIILDNAVLDF 208
+H + + ++ + N+++D
Sbjct: 252 LHKCVYQAKTSERSDTLTLNSLVDM 276
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC-SLAHAHQKGLEIHAHV- 92
N ++ L+Q + A+ ++ +M C + T AC SL H L++H V
Sbjct: 199 NAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVSVTSACGSLGHL-DLALQLHKCVY 257
Query: 93 -IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
K D NSL+ Y + A+++F+ + P+V +WT++I G + G +A
Sbjct: 258 QAKTSERSDTLTLNSLVDMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDA 317
Query: 152 IDMF-CGID--VKPNANTLVSVLSACSSLGSRKLGK 184
++ F C + V+PN T + VLSAC G+ + GK
Sbjct: 318 LECFRCMREAGVRPNHVTFIGVLSACVHGGAVQEGK 353
>gi|224098349|ref|XP_002311155.1| predicted protein [Populus trichocarpa]
gi|222850975|gb|EEE88522.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
+K L F + N +P P ++ N++++ +++ Q AI +Y+ MLN +
Sbjct: 72 IKSYLLFLKCNYARFLFDSLPNPSVMLYNSIIRAYSRTKNHQEAINIYHCMLNKGLEPDK 131
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
YTFT LKAC+ A ++G+ +H +I G D FI SL+ Y + D+ A ++F+
Sbjct: 132 YTFTFVLKACTGALYFKEGILVHKDIIVRGLERDAFIGTSLVDMYCKMGDLKLARKVFDK 191
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLS---ACSSLGSRKLG 183
+ DVV W+ +I GLS+ E + + LVS+L+ A S LG
Sbjct: 192 MPEKDVVAWSAMILGLSQSEDPNEVFGFIRSMQLSGVELNLVSILNLVPAVSRLGDIDAC 251
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+ IH + +R + I+ N ++D
Sbjct: 252 RCIHGYVIR--RGFDAIVSNGLID 273
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N+ + L +C ++ L+IH + G +D L+ Y+ A +F
Sbjct: 32 NYSNYVSLLSSCKTLNSL---LQIHVRLTVSGLQNDHLTNAHLIKSYLLFLKCNYARFLF 88
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGID--VKPNANTLVSVLSACSSLGSRK 181
+S+ P V+ + +II S+ H+EAI+++ C ++ ++P+ T VL AC+ K
Sbjct: 89 DSLPNPSVMLYNSIIRAYSRTKNHQEAINIYHCMLNKGLEPDKYTFTFVLKACTGALYFK 148
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G +H + E + + +++D
Sbjct: 149 EGILVHKDIIVRGLERDAFIGTSLVD 174
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
L+ + F N +I QP+I NT+++ L + +AI Y M + N+
Sbjct: 53 LRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNN 112
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIK---------YGHLHDIFIQNSLLHFYVTVKDI 117
+TF LKAC+ Q G++IH V+K G + ++F+ SL+ Y ++
Sbjct: 113 FTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNM 172
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC------GIDVKPNANTLVSVL 171
A +F+ + D+V+W +I G + G KEAID+F + +KP+ NT + +L
Sbjct: 173 EKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLL 232
Query: 172 SACSSLGSRKLGK 184
C+ G G+
Sbjct: 233 CGCTHAGLVDEGR 245
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
++G HD ++ N +L D +F+ + P++ W T+I GL +AI+
Sbjct: 39 RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
+ + + PN T VL AC+ L +LG IH
Sbjct: 99 FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIH 135
>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 598
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 28 IPQPHILN---TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
IPQP + L+ L S P A+ L+ P T ++L A A +
Sbjct: 75 IPQPSLFAWNAILISLSLHSPDPSAAVRLFASSAVSPDEITLSTLLRSLAASGPALSPLV 134
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
E+HA G D+F+ N+L+ Y D+ SA +F+ + DVV+W ++IS ++
Sbjct: 135 TGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACAR 194
Query: 145 CGFHKEAIDMF-------C--GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
G+++E +D+F C G V PN T+ SVL AC+ L G +H + +
Sbjct: 195 AGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGL 254
Query: 196 ENNIILDNAVLDF 208
+ ++ + N+++ F
Sbjct: 255 DMDMAVWNSIIGF 267
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 34/177 (19%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T T L AC+ G+ +H + G D+ + NS++ FY + A Q+
Sbjct: 222 NGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLL 281
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGID-------------------- 159
+ + D ++++ +I+G G +E + +F GI
Sbjct: 282 DGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLR 341
Query: 160 ---------VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V PN+ TL V+ + S + K H +++RN + +I L +A++D
Sbjct: 342 LLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALID 398
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 7/163 (4%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ L Q+ + + L +M+ N T + + + + H +
Sbjct: 322 MWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYA 381
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I+ + I + ++L+ Y + +A ++F + WT+IIS ++ G EA+
Sbjct: 382 IRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEAL 441
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG----SRKLGKAIHA 188
+F + KP+ T +VLSAC+ G +RK+ ++ A
Sbjct: 442 SLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEARKVFNSMQA 484
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N L+ L Q A Y +M + + N T+ L ACS + A + G IH+H+
Sbjct: 297 VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHI 356
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ GH D+ I N+L+ Y D+ A ++F ++ D+++W II+G ++ EA+
Sbjct: 357 SEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAM 416
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ + VKP T + +LSAC++ + GK IH LR+ ++N L NA+++
Sbjct: 417 RLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
P+ T+ L+ C+ + IHA +++ DIF+ N L++ YV + + A
Sbjct: 22 PTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDA 81
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 177
HQ+F + DV++W ++IS ++ GF K+A +F + PN T +S+L+AC S
Sbjct: 82 HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ GK IH+ ++ + + + N++L
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQNSLL 170
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q + + A L+ +M N ++ TF L C A + G +IH + +
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L++ Y+ + A +F+S+ DV++WT +I G + G +AI++
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + +P +T S+L C+S GK + A+ L + E + + NA++
Sbjct: 621 FWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALI 675
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ +M N TF+ LK C+ + +G ++ A+++ G+ D + N+L+
Sbjct: 617 AIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALIS 676
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + A ++F+ + D+V+W II+G ++ G + A++ + DV PN +
Sbjct: 677 AYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFS 736
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
VS+L+ACSS + + GK +HA ++ + ++ + A++
Sbjct: 737 FVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALI 776
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P I+ N ++ Q+ Q A+ +M N ++F L ACS A ++
Sbjct: 693 KMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEE 752
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +HA ++K D+ + +L+ Y A ++F++++ +VVTW +I+ ++
Sbjct: 753 GKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQ 812
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G +A+ F ++ +KP+ +T S+LSAC+ G
Sbjct: 813 HGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H ++P+ ++ N+L+ Q + A L+ +M N N T+ L AC
Sbjct: 82 HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G +IH+ +IK G+ D +QNSLL Y D+ A Q+F + DVV++ T++
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTML 201
Query: 140 SGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
++ + KE + +F + + P+ T +++L A ++ GK IH
Sbjct: 202 GLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH 252
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ LY +M + TF L AC+ + A+ G IH +++ G + + N+L++
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + A +F DV++W ++I+G ++ G ++ A +F + +++P+ T
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
SVLS C + + +LGK IH + + ++ L NA+++
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALIN 575
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 99/186 (53%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++L Q+ + + L+N+M + YT L AC++ +
Sbjct: 182 RVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQ 241
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH VIKYG + FI SLL Y + + A ++F+ + F D+V WT +I G ++
Sbjct: 242 GRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQ 301
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+A+ +F + + PN+ T+ +V+SA + L LG+++HA ++ + ++
Sbjct: 302 NKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVV 361
Query: 202 DNAVLD 207
NA++D
Sbjct: 362 RNALVD 367
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYN-HYTFTQALKACSLAHAHQKGL 86
P + +L L + + +A+ L+ M CP++ + ALKAC + + G
Sbjct: 84 PDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSLALKACVRSADFRYGR 143
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H V+K G D F+ NSL+ Y D+ +A ++F+ V +VV+WT+++SG + G
Sbjct: 144 RLHCDVVKAGGA-DGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNG 202
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+E + +F + +V P+ T+VSVL+AC+ LG G+ IH ++ N +
Sbjct: 203 IAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISA 262
Query: 204 AVLD 207
++LD
Sbjct: 263 SLLD 266
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +++ ++ L+N+M S + + AL AC G H + IK
Sbjct: 394 NSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIK 453
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
Y + +I++ +LL+ Y D+ SA ++FN + + VTW+ +I G G +ID+
Sbjct: 454 YAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDL 513
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
F + ++ PN S+LSACS G GK R+ N
Sbjct: 514 FNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFN 557
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 3/170 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ+ P +A+ L+ N T + A + G +HA +K G +
Sbjct: 300 TQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESD 359
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
++N+L+ Y + + A+ IF ++ DVV W ++++G S+ G E++ +F +
Sbjct: 360 VVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQ 419
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ P+A ++V+ LSAC L +GK H ++++ +NI ++ A+L+
Sbjct: 420 GISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNL 469
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 108/245 (44%), Gaps = 69/245 (28%)
Query: 14 SFKQLNQIHAQIIK---IPQPHILNTLLKLLTQSS----------TPQNAIPLYNKML-- 58
S +Q+ Q HAQ+I I P N LLKL +S PQ + +YN M+
Sbjct: 28 SMQQIKQTHAQLITTALISHPVSANKLLKLAACASLSYAHKLFDQIPQPDLFIYNTMIKA 87
Query: 59 ------NCPSSY--------------NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL 98
+C +S N Y+F A AC Q+G ++ H +K G
Sbjct: 88 HSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLE 147
Query: 99 HDIFIQNSLLHFY---------------VTVKDIFS----------------AHQIFNSV 127
+++F+ N+L+ Y +D++S A ++F+ +
Sbjct: 148 NNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGM 207
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
DVV+W+TII+G + G EA+D F I KPN TLVS L+ACS+L + GK
Sbjct: 208 RERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGK 267
Query: 185 AIHAH 189
IHA+
Sbjct: 268 WIHAY 272
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q A+ ++KML N YT AL ACS A +G IHA++ K
Sbjct: 216 STIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGK 275
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQI-FNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ + S++ Y +I SA ++ F V V W +I G + G EAI+
Sbjct: 276 GEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAIN 335
Query: 154 MFCGIDVK---PNANTLVSVLSACS 175
+F + V+ PN T +++L+ACS
Sbjct: 336 VFEQMKVEKISPNKVTFIALLNACS 360
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 31/167 (18%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N ++ P AI ++ +M S N TF L ACS
Sbjct: 316 LWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACS--------------- 360
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
H ++ L+F + V D + P++ + ++ LS+ G KEA
Sbjct: 361 ------HGYMVEEGKLYFRLMVSDY---------AITPEIEHYGCMVDLLSRSGLLKEAE 405
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
DM + + P+ ++L+AC + G I ++ ++ N+I
Sbjct: 406 DMISSMPMAPDVAIWGALLNACRIYKDMERGYRI-GRIIKGMDPNHI 451
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 13/215 (6%)
Query: 6 LKSLK-PTLSFKQLNQIHAQIIKIPQPH---ILNTLLKLLTQSST-PQNAIPLYNKML-N 59
L SLK L+ K L+QI I + N L++ ++S T P AI +YN +
Sbjct: 10 LLSLKTKALNIKFLDQILTHTITTGFTYSTPTWNCLIRAYSRSPTAPIKAILVYNFFIKT 69
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
C + ++YT+ LKACS G ++H HVIK G DI++QN+L+HFY +V +
Sbjct: 70 CSTRPDNYTYPCLLKACSRLFTDSNGKQVHTHVIKTGLDSDIYVQNALVHFYGSVGNSTD 129
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSAC- 174
A +F+ + DV +W +++ + E + +F CG VK + +LV VLSAC
Sbjct: 130 ACFLFDRMPDRDVASWNSLMGIYNTNNSFTEVMVLFKKLMCGC-VKADKISLVIVLSACA 188
Query: 175 -SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + + G+++H + ++ + +DNA+L+F
Sbjct: 189 QAQMEGLEYGRSVHGYVIKVGFGCFLNVDNALLNF 223
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N ++ ++ P A+ L+ KM + + T L AC+ Q +H +
Sbjct: 279 LWNLMVHAYVKARCPNEALDLFEKMDSAGVIPDENTMVSVLLACASISDLQCARLLHRFI 338
Query: 93 IKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ ++ D+F++ +L+ Y + A F + + DV TWT +I GL+ G+ EA
Sbjct: 339 NRNSNVRQDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEA 398
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+ MF ++ ++PN +TLVSVL+AC G K G
Sbjct: 399 LSMFNRMENQGIRPNESTLVSVLTACIHSGLVKEG 433
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 44/222 (19%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P + N+L+ + +++ + L+ K++ + + L AC A A +
Sbjct: 136 RMPDRDVASWNSLMGIYNTNNSFTEVMVLFKKLMCGCVKADKISLVIVLSAC--AQAQME 193
Query: 85 GLE----IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTII 139
GLE +H +VIK G + + N+LL+FY+ K+I A ++F+ V DVV++T +I
Sbjct: 194 GLEYGRSVHGYVIKVGFGCFLNVDNALLNFYIKCKEIDDASKMFDEFVHEGDVVSYTILI 253
Query: 140 SGLSKCGF-------------------------------HKEAIDMFCGID---VKPNAN 165
+ + G EA+D+F +D V P+ N
Sbjct: 254 NAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMDSAGVIPDEN 313
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVL 206
T+VSVL AC+S+ + + +H RN N ++ L A++
Sbjct: 314 TMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALI 355
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ +AI +Y +ML + TF +KAC +A G ++H HVIK G+ H +
Sbjct: 157 SQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHL 216
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCG 157
QN+L+ Y I A +F + D+++W ++I+G ++ G+ EA+ DMF
Sbjct: 217 IAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQ 276
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+PN SV SAC SL + G+ I
Sbjct: 277 GVYQPNEFIFGSVFSACRSLLKPEFGRQIQG 307
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L +Q P A L+ ML + ++ T T L C+ + + G ++H +K
Sbjct: 454 NAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVK 513
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+ + N L+ Y + A +F+S PD+V+W+++I G ++ G +EA+++
Sbjct: 514 SGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNL 573
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + V+PN T + VLSACS +G
Sbjct: 574 FRMMRNLGVQPNEVTYLGVLSACSHIG 600
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+ + L+ + + A+ +N L N T+ + AC+ + + G IH H++
Sbjct: 48 NSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHIL 107
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K D+ +QN +L+ Y + A + F+++ VV+WT +ISG S+ G +AI
Sbjct: 108 KSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAII 167
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
M+ + P+ T S++ AC G LG +H H +++ ++++I NA++
Sbjct: 168 MYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALI 223
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 5/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ L S + AI + +M++ + TF L AC +G
Sbjct: 344 IESPDLVSWNAIIAALANSDVNE-AIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQG 402
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSK 144
++IH+++IK G + NSLL Y ++ A +F + ++V+W I+S S+
Sbjct: 403 MQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQ 462
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
EA +F + + KP+ T+ ++L C+ L S ++G +H S+++ ++ +
Sbjct: 463 HKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSV 522
Query: 202 DNAVLD 207
N ++D
Sbjct: 523 SNRLID 528
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F AC + G +I K+G ++F SL Y + SA + F
Sbjct: 282 NEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAF 341
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRK 181
+ PD+V+W II+ L+ + EAI FC + + P+ T +++L AC S +
Sbjct: 342 YQIESPDLVSWNAIIAALANSDVN-EAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLN 400
Query: 182 LGKAIHAHSLR 192
G IH++ ++
Sbjct: 401 QGMQIHSYIIK 411
>gi|218190515|gb|EEC72942.1| hypothetical protein OsI_06806 [Oryza sativa Indica Group]
Length = 1030
Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA-HAHQKGLEIHAHVI 93
N+++ +++ + A+ L+ +M++ N+ T L CSL + G EIH V+
Sbjct: 271 NSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVV 330
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
++G DI + N+L+ Y V ++ + IF S D+VTW T+I+G + A+
Sbjct: 331 RHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALK 390
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN---LNENNIILDNAVLD 207
+F G+ + P++ +L+S+L+AC+ +G+ ++G +H + R+ L E +++ NA++
Sbjct: 391 LFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLM--NALVS 448
Query: 208 F 208
F
Sbjct: 449 F 449
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIF 124
T L C+ + G IH +VIK G D N+L+ Y + AH F
Sbjct: 200 TVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAF 259
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG-SR 180
+++ DVV+W +II+G S+ G +EA+ +F + + PN +TL +VL CS + R
Sbjct: 260 STICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGR 319
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVL 206
GK IH +R+ E +I + NA++
Sbjct: 320 HYGKEIHGFVVRHGLEMDISVSNALM 345
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N + +L Q+ A L++++ + + + + T L AC + Q + H ++++
Sbjct: 607 NLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLR 666
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L DI ++ +LL Y +I +A+ +F + D+V +T +I + G ++A+++
Sbjct: 667 -ASLEDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVEL 725
Query: 155 FCG---IDVKPNANTLVSVLSACSSLG 178
F +D+KP+ L ++LSACS G
Sbjct: 726 FSKMLTLDIKPDHVVLTALLSACSHAG 752
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +K G+ + +++ Y + + AH +F+ + D V +I+ S+ G
Sbjct: 116 LHGLAVKVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGL 175
Query: 148 HKEAIDMF-----CGIDVK-PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ + +F G+D P A T+ VL C+ L + G++IH + ++ E + +
Sbjct: 176 YNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLS 235
Query: 202 DNAVL 206
NA++
Sbjct: 236 GNALV 240
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + P A+ L+ +L + + + L AC+ + G+ +H ++ +
Sbjct: 373 NTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFR 432
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ L + + N+L+ FY +A + F ++ D V+W I+S + H E
Sbjct: 433 HPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFF 492
Query: 154 MFCGI---DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G DV ++ T+++++ + G + + ++ H +SLR + + NA+LD
Sbjct: 493 RLLGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQES-HGYSLRVGYTGDSSVANAILD 549
Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 94 KYGHLHD------------IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
K G+LHD I N+++ Y+ + A FN + D+ TW +
Sbjct: 553 KCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRL 612
Query: 142 LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ +A +F + + P+ ++ ++LSAC L S +L K H + LR E +
Sbjct: 613 YAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE-D 671
Query: 199 IILDNAVLD 207
I L+ A+LD
Sbjct: 672 IHLEGALLD 680
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 85.9 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q +NA+ + +M S N +TF + C+ + G ++HAHVI+
Sbjct: 240 TIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR 299
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + + + NS++ Y + A +F + D+++W+T+ISG ++ G +EA D
Sbjct: 300 GLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYL 359
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +PN SVLS C ++ + GK +HAH L E N ++ +A+++
Sbjct: 360 SWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALIN 414
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L ++ + A+ ++ M + YTF+ ALKAC+ + A G EIH +K G
Sbjct: 144 LVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAV 203
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
F+ N+L Y + ++F S+ DVV+WTTII + G + A+ F +
Sbjct: 204 SFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRE 263
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
DV PN T +V+S C++LG + G+ +HAH +R +++ + N+++
Sbjct: 264 TDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIM 312
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F L C ++G ++HAHV+ G + +Q++L++ Y I A +IF
Sbjct: 370 NEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIF 429
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+ + ++V+WT +I+G ++ G+ +EAID+F + ++P++ T ++VL+ACS G
Sbjct: 430 DEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVD 489
Query: 182 LG 183
LG
Sbjct: 490 LG 491
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 50 AIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L++KM P + + + + ALKAC L + G +H + +K ++ +F+ ++L+
Sbjct: 51 ALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALV 110
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y+ + + +F + +VV+WT II+GL + G++KEA+ F + V +
Sbjct: 111 DMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTY 170
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLR 192
T S L AC+ G+ G+ IH +L+
Sbjct: 171 TFSSALKACADSGALNYGREIHCQTLK 197
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 164
N +L V + +A Q+F+ ++ D ++WTTIISG EA+ +F + V+P
Sbjct: 5 NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64
Query: 165 NT----LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ L L AC S G+++H +S++ N++ + +A++D
Sbjct: 65 HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVD 111
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 8/146 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF+ L AC +HA +IK G D+F+++SL+ Y+ + D+ S +F
Sbjct: 173 NSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVF 229
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRK 181
+ +V D+V W +II+G ++ G A+++F + N TL SVL AC+ + +
Sbjct: 230 DEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLE 289
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
+G+ +HAH L+ + ++IL NA+LD
Sbjct: 290 VGRQVHAHVLK--YDRDLILHNALLD 313
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ QS A+ L+ +M N T T L+AC+ + G ++HAHV
Sbjct: 239 VWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHV 298
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+LL Y + A +F+ + DV++W+T+ISGL++ G EA+
Sbjct: 299 LKYDR--DLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEAL 356
Query: 153 DMFCGIDVK---PNANTLVSVLSACSSLG 178
+F + + PN T+V VL ACS G
Sbjct: 357 KVFDLMKAEGPTPNNITMVGVLFACSHAG 385
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
PH L ++ L A+ L + + + + +K C G IH
Sbjct: 30 HPHPLVSIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIH 89
Query: 90 AHV------IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
HV +F+ NSL+ Y + A ++F + +VV+WTT+++ L+
Sbjct: 90 RHVSLCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALA 149
Query: 144 KC-GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
G KEA+ + V N+ T SVL AC + G + A+HA ++ ++++
Sbjct: 150 NAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPG---VLAAMHADIIKVGLDSDV 206
Query: 200 ILDNAVLD 207
+ ++++D
Sbjct: 207 FVRSSLID 214
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL+ L++S+ P A+ +N+M NH+TF+ L AC+ A +G +IHA + K+
Sbjct: 170 TLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKH 229
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
L+D F+ +LL Y + A +F+ + ++V+W ++I G K + AI +F
Sbjct: 230 CFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVF 289
Query: 156 CGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + P+ ++ SVLSAC+ L GK +H ++ + + N+++D
Sbjct: 290 REVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVD 342
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A + M+ + +++ A + A +G IH+HV+K GH+ + I +SL
Sbjct: 382 EQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSL 441
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + A+Q+F +VV WT +I+ + G EAI +F + V P
Sbjct: 442 VTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEY 501
Query: 165 NTLVSVLSACSSLG 178
T VSVLSACS G
Sbjct: 502 ITFVSVLSACSHTG 515
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ AI ++ ++L+ + + + L AC+ G ++H ++K
Sbjct: 270 NSMIVGFVKNKLYGRAIGVFREVLSLGP--DQVSISSVLSACAGLVELDFGKQVHGSIVK 327
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++++NSL+ Y A ++F DVVTW +I G +C ++A
Sbjct: 328 RGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTY 387
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + V+P+ + S+ A +S+ + G IH+H L+
Sbjct: 388 FQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLK 428
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 23/203 (11%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
KP +F+ L P + L+L T + Q+ +P +++ + P +
Sbjct: 59 KPNSNFEGLG---------PMSREVAFWLQLFT---SYQSGVPKFHQFSSVPDL--KHLL 104
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
A K SL HA Q IH+ ++ + + N+LL Y I +FN+
Sbjct: 105 NNAAKLKSLKHATQ----IHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPH 160
Query: 130 P--DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
P +VVTWTT+I+ LS+ +A+ F + + PN T ++L AC+ G+
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQ 220
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
IHA ++ N+ + A+LD
Sbjct: 221 QIHALIHKHCFLNDPFVATALLD 243
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N L+ L Q A Y +M + + N T+ L ACS + A + G IH+H+
Sbjct: 297 VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHI 356
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ GH D+ I N+L+ Y D+ A ++F ++ D+++W II+G ++ EA+
Sbjct: 357 SEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAM 416
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ + VKP T + +LSAC++ + GK IH LR+ ++N L NA+++
Sbjct: 417 RLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 61 PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
P+ + T+ L+ C+ + IHA +++ G DIF+ N L++ YV + + A
Sbjct: 22 PTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDA 81
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 177
HQ+F + DV++W ++IS ++ GF K+A +F + PN T +S+L+AC S
Sbjct: 82 HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ GK IH+ ++ + + + N++L
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQNSLL 170
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q + + A L+ +M N ++ TF L C A + G +IH + +
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L++ Y+ + A +F+S+ DV++WT +I G + G +AI++
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620
Query: 155 FCGIDVK----PNANTLVSVLSACSSLG 178
F + + P+ +T S+LSAC+ G
Sbjct: 621 FWQMQNEGFRPPDGSTFTSILSACNHAG 648
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H ++P+ ++ N+L+ Q + A L+ +M N N T+ L AC
Sbjct: 82 HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G +IH+ +IK G+ D +QNSLL Y D+ A Q+F + DVV++ T++
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTML 201
Query: 140 SGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
++ + KE + +F + + P+ T +++L A ++ GK IH
Sbjct: 202 GLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH 252
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ LY +M + TF L AC+ + A+ G IH +++ G + + N+L++
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + A +F DV++W ++I+G ++ G ++ A +F + +++P+ T
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
SVLS C + + +LGK IH + + ++ L NA+++
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALIN 575
>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 99/191 (51%), Gaps = 6/191 (3%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
Q+ + I + +I+N ++ +QS P AI L+ +ML + ++ L S+
Sbjct: 407 QVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLL---SVL 463
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G ++H + +K G + D+ + +SL Y + ++++F + F D W ++I
Sbjct: 464 DCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMI 523
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
SG ++ G+ +EAI +F + P+ +TL +VL+ CSS S GK IH ++LR +
Sbjct: 524 SGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGID 583
Query: 197 NNIILDNAVLD 207
+ L +A+++
Sbjct: 584 KGMDLGSALVN 594
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 4/168 (2%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
S K Q++ ++ ++ P ++L+ +Q Q+ L+ M+ + + + + L
Sbjct: 601 SLKLARQVYDRLPEL-DPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSIL 659
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA +L+ G ++HA++ K G + + +SLL Y I + F+ + PD++
Sbjct: 660 KAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLI 719
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
WT +I+ ++ G EA+ ++ + KP+ T V VLSACS G
Sbjct: 720 AWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGG 767
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 6/186 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IPQP ++ N ++ Q + ++ ++KM N ++ + ACS A
Sbjct: 110 IPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFS 169
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ H IK G+ ++++L+ + A+++F + +V W TII+G +
Sbjct: 170 ELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRN 229
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+ D+F + V KP++ T SVL+AC+SL + GK + A ++ ++ +
Sbjct: 230 QNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIK-CGAEDVFVC 288
Query: 203 NAVLDF 208
A++D
Sbjct: 289 TAIVDL 294
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+++M + YT++ L AC+ + G + A VIK G D+F+ +++ Y
Sbjct: 238 LFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCG-AEDVFVCTAIVDLYA 296
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTL 167
+ A ++F+ + P VV+WT ++SG +K A+++F G+++ N T+
Sbjct: 297 KCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEI--NNCTV 354
Query: 168 VSVLSAC 174
SV+SAC
Sbjct: 355 TSVISAC 361
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+++ML+ +S + T L CS + +G EIH + ++ G + + ++L
Sbjct: 533 REAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSAL 592
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NA 164
++ Y + A Q+++ + D V+ +++ISG S+ G ++ +F + + ++
Sbjct: 593 VNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDS 652
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAH 189
+ S+L A + LG +HA+
Sbjct: 653 FAISSILKAAALSDESSLGAQVHAY 677
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P +++ +L T+S+ +A+ ++ +M + N+ T T + AC +
Sbjct: 310 RIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCE 369
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF---NSVVFPDVVTWTTIISG 141
++HA V K G D + +L+ Y DI + Q+F + + ++V +I+
Sbjct: 370 ASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITS 427
Query: 142 LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
S+ +AI +F + + SV S S L LGK +H ++L++
Sbjct: 428 FSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKS 479
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 88 IHAHVIK-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+ AH+++ Y D+F+ SLL +Y + A ++F+++ PDVV+ +ISG +
Sbjct: 70 LQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHR 129
Query: 147 FHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+E++ F + + N + SV+SACS+L + + + H+++
Sbjct: 130 LFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIK 178
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A LY +ML S N TF L +C+ A +G IH+H+ + G D+ + N+L+
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALIT 301
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH-KEAIDMFCGI-------DVK 161
Y + A +IF+ + DV++W+ +I+G ++ G+ KE+ID + V
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF 361
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHA 188
PN T +S+L AC++ G+ + G+ IHA
Sbjct: 362 PNKVTFMSILRACTAHGALEQGRQIHA 388
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P A + +M + N TF LKAC+ +KG +IH V G D+ + +
Sbjct: 138 PAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATA 197
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
L+ Y +I A ++F+ + +VV+WT II ++ EA +++ + + PN
Sbjct: 198 LITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPN 257
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNENNIILDNAVL 206
A T VS+L++C++ + G+ IH+H S R L E ++I+ NA++
Sbjct: 258 AVTFVSLLNSCNTPEALNRGRRIHSHISERGL-ETDMIVANALI 300
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T+ ++ C+ A + G +H + + G DI++ NSL++FY +D+ SA Q+F
Sbjct: 55 NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVF 114
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+ DVVTW+++I+ + +A D F +++PN T +S+L AC++ +
Sbjct: 115 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILE 174
Query: 182 LGKAIH 187
G+ IH
Sbjct: 175 KGRKIH 180
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 34/176 (19%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF L+AC+ A ++G +IHA + K G D +Q ++ + Y I+ A Q+F
Sbjct: 363 NKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVF 422
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK----------------------- 161
+ + +VV WT+ +S KCG A +F + +
Sbjct: 423 SKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFE 482
Query: 162 -----------PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
P+ T++++L AC +L + GK +HA +++ E++ ++ +++
Sbjct: 483 LLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLI 538
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L+AC ++G +HA +K G D + SL+ Y + A +F+ +
Sbjct: 498 TVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKM 557
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D V W +++G + G EA+D+F + V PN TL +V+SACS G + G+
Sbjct: 558 SNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGR 617
Query: 185 AI 186
I
Sbjct: 618 EI 619
>gi|255570994|ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534228|gb|EEF35943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 10/183 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I N L++ + AI LY KML + YT+ LKACS A ++G EIH H
Sbjct: 85 IWNMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEIHIHA 144
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK--- 149
+ D+++ +++ Y + A +F+ + + DVV W ++I+G S H+
Sbjct: 145 KRLDLDSDVYVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSMIAGFS---LHRVCY 201
Query: 150 -EAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
E I + + V+PN++T+V+VL A + + GKA+H +R +++++ +
Sbjct: 202 NETIQLLAQMQKDLVRPNSSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVATGL 261
Query: 206 LDF 208
LD
Sbjct: 262 LDM 264
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 48 QNAIPLYNKMLNCPS----SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI 103
+ A+ L+ M+ S T L+AC+ +G IH + IK G + D+ +
Sbjct: 304 REALDLFQYMMRIKDAAVKSPTEVTLATVLRACAELTDVSRGRCIHCYTIKSGFISDLML 363
Query: 104 QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGI 158
N+LL Y + A + F+ + D V+++ IISG + G KEA+ MF G+
Sbjct: 364 GNTLLSTYAKCGTVSDAIRYFHEMELKDEVSYSAIISGCMQNGNAKEALSMFHRMRLSGM 423
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
D P T+V +L AC+ L + + G H+++L + I + NA++D
Sbjct: 424 D--PELATMVGILPACAHLAALQHGSCCHSYALIKGFTSEITICNALIDM 471
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L A + A+A G +H ++ G++ D+ + LL Y + I A F
Sbjct: 219 NSSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVATGLLDMYGKCQCIIYARNFF 278
Query: 125 NSV-VFPDVVTWTTIISGLSKCGFHKEAIDMF-CGIDVK------PNANTLVSVLSACSS 176
+ + + + VTW+ ++ C +EA+D+F + +K P TL +VL AC+
Sbjct: 279 DMMSIVRNEVTWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRACAE 338
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
L G+ IH +++++ ++++L N +L
Sbjct: 339 LTDVSRGRCIHCYTIKSGFISDLMLGNTLL 368
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++++M T L AC+ A Q G H++ + G +I
Sbjct: 404 QNGNAKEALSMFHRMRLSGMDPELATMVGILPACAHLAALQHGSCCHSYALIKGFTSEIT 463
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
I N+L+ Y I +A +F+ + D+V+W +I G EA+ +F +
Sbjct: 464 ICNALIDMYAKCGRIDTARNVFDRMHKRDIVSWNAMIIAYGNHGLGMEALLLFDNMLADG 523
Query: 160 VKPNANTLVSVLSACSSLG 178
++P+ T + +LSACS G
Sbjct: 524 LEPDDVTFICLLSACSHSG 542
>gi|302803175|ref|XP_002983341.1| hypothetical protein SELMODRAFT_117959 [Selaginella moellendorffii]
gi|300149026|gb|EFJ15683.1| hypothetical protein SELMODRAFT_117959 [Selaginella moellendorffii]
Length = 421
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 107/191 (56%), Gaps = 13/191 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKML-NC-PSSYNHYTFTQALKACSLAHAH 82
++P I+ N ++ ++ ++A+ L++ M C P+S TF ALKAC++
Sbjct: 48 RLPARSIVSWNAMMLGYAENKEAESALELFSLMEKRCQPTSR---TFVAALKACAVLAEA 104
Query: 83 QKGLEIHAHVIK-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
++G E+ V K YG D+F+ NSL+ Y + + ++F+ + DVV+W ++ISG
Sbjct: 105 EEGRELEGKVAKIYGFQWDLFVANSLVDMYAKCGSMVDSRRVFDGMRRHDVVSWNSLISG 164
Query: 142 LSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN-EN 197
+ + A+++F ++++ ++ T ++ L AC +G+ +G+ +H +R+L +
Sbjct: 165 YADNDQGEAALELFVPMELEGCAHDSRTFLASLKACGCVGALDIGRTLHGK-IRDLGLDG 223
Query: 198 NIILDNAVLDF 208
++++ +++DF
Sbjct: 224 DVVIATSLVDF 234
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + + A+ L+ M +++ TF +LKAC A G +H +
Sbjct: 159 NSLISGYADNDQGEAALELFVPMELEGCAHDSRTFLASLKACGCVGALDIGRTLHGKIRD 218
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK---EA 151
G D+ I SL+ FY + A Q+F+S+V D+V W +++G S+ G + +A
Sbjct: 219 LGLDGDVVIATSLVDFYGKCGSMVDAEQVFSSIVTKDIVAWNALLTGYSRQGDTEALFQA 278
Query: 152 ID--MFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
D M V+P+ T + +L+ACS G GK
Sbjct: 279 FDRMMTSRPRVRPDGVTFLCLLTACSHSGLVDQGK 313
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+ + N+LL Y + A ++F+ + +V+W ++ G ++ + A+++F ++
Sbjct: 22 DVVLGNTLLDLYANCGSLPDARRLFDRLPARSIVSWNAMMLGYAENKEAESALELFSLME 81
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+P + T V+ L AC+ L + G+ +
Sbjct: 82 KRCQPTSRTFVAALKACAVLAEAEEGRELEG 112
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
+Q+ + AI L+ +M Y F+ L C+ G ++HA V KYG +
Sbjct: 188 FSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLE 247
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
++ N+L+ Y + + SA ++F+ + D V++ ++ISGL++ GF A+++F +
Sbjct: 248 TYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKR 307
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+KP+ T+ S+LSAC+S G+ G+ +H++ ++ +++I++ A+LD
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDL 358
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 3/177 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+L+ L Q A+ L+ KM + T L AC+ A KG ++H++VI
Sbjct: 282 FNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVI 341
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+ ++ +LL YV DI +AH++F + +VV W ++ K E+
Sbjct: 342 KAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFR 401
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + +K PN T S+L C+S+G+ LG+ IH ++ + N+ + + ++D
Sbjct: 402 IFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLID 458
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL----EIHAHVIKYGHLHDIFIQNS 106
+ L++ M+ S +F L+ACS H+ G+ +IHA +I +G L I N
Sbjct: 96 LDLFSCMIEENVSPTEISFASVLRACS---GHRIGIRYAEQIHARIICHGLLCSPIISNP 152
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPN 163
L+ Y I SA ++F+++ D V+W +ISG S+ G+ +EAI +FC + + P
Sbjct: 153 LIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPT 212
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHA 188
SVLS C+ + +G+ +HA
Sbjct: 213 PYVFSSVLSGCTKIKLFDVGEQLHA 237
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS ++A+ ++ +M + +TF A+ A + ++G +IHA +IK
Sbjct: 586 NGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIK 645
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI + N+L+ FY I A + F + + V+W +I+G S+ G+ EA+++
Sbjct: 646 RGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNL 705
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + PN T V VLSACS +G
Sbjct: 706 FEKMKQVGEMPNHVTFVGVLSACSHVG 732
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ + +MLN ++ F+ A+ AC+ A +G +IHA G+ D+ I N+L+
Sbjct: 500 ALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVS 559
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y I A+ F + D ++W +ISG ++ G+ ++A+ +F ++ ++ + T
Sbjct: 560 LYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFT 619
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S +SA +++ + K GK IHA ++ +++I + NA++ F
Sbjct: 620 FGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITF 661
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T+ L+ C+ A G +IH VIK G ++++ + L+ Y + +AH I
Sbjct: 414 NQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVIL 473
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
++ DVV+WT +ISG ++ EA+ F + ++ + S +SAC+ + +
Sbjct: 474 RTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALN 533
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IHA S + ++ + NA++
Sbjct: 534 QGRQIHAQSYVSGYSEDLSIGNALVSL 560
Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T+ L C + + + ++H ++K G ++ + N L+ Y + D+ ++F
Sbjct: 9 NCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVF 68
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGID--VKPNANTLVSVLSACSSLGSR- 180
+ V +W IISG + +D+F C I+ V P + SVL ACS G R
Sbjct: 69 EDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS--GHRI 126
Query: 181 --KLGKAIHA 188
+ + IHA
Sbjct: 127 GIRYAEQIHA 136
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 85/147 (57%), Gaps = 3/147 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ +Y++M N T+ LKAC + + G +IHAH+I+ G D+ ++ +L
Sbjct: 12 EDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETAL 71
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNA 164
++ YV I A IF+ +V +V++WT +I GL+ G +EA F + + PN+
Sbjct: 72 VNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNS 131
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSL 191
T VS+L+A +S G+ + K +H+H++
Sbjct: 132 YTYVSILNANASAGALEWVKEVHSHAV 158
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + Q + A+ L+ +M + TF L A A + E+H++ I
Sbjct: 405 NAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAID 464
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L D+ + N+L+H Y + A Q+F+ +V +V TWT +ISGL++ G EA +
Sbjct: 465 AG-LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSL 523
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
F + + P+A T VS+LSAC+S G+ + K +H+H++
Sbjct: 524 FLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAV 563
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q A L+ +ML + T+ L AC+ A + E+H+H + G + D
Sbjct: 511 LAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSD 570
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
+ + N+L+H Y + A ++F+ ++ DV +WT +I GL++ G +A+D+F + +
Sbjct: 571 LRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKL 630
Query: 161 ---KPNANTLVSVLSACSSLG 178
KPN + V+VLSACS G
Sbjct: 631 EGFKPNGYSFVAVLSACSHAG 651
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT+ L A + A A + E+H+H + G D+ + N+L+H Y I A +F
Sbjct: 130 NSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVF 189
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVL--SACSSLGS 179
+ +V D+ +WT +I GL++ G +EA +F ++ PN T +S+L SA +S G+
Sbjct: 190 DGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGA 249
Query: 180 RKLGKAIHAHS 190
+ K +H H+
Sbjct: 250 LEWVKEVHKHA 260
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH--AHQKGLEIHAHVIKYGHL 98
L Q Q A L+ +M N T+ L A ++ A + E+H H K G +
Sbjct: 207 LAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFI 266
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
D+ + N+L+H Y I A +F+ + DV++W +I GL++ G EA +F +
Sbjct: 267 SDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKM 326
Query: 159 DVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ P++ T +S+L+ S G+ + K +H H++
Sbjct: 327 QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAV 362
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L Q+ A ++ KM + T+ L A + E+H H ++
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS--KCGFHKEAI 152
G + D+ + ++ +H Y+ I A IF+ + +V TW +I G++ KCG +EA+
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCG--REAL 421
Query: 153 DMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+F + + P+A T V++LSA + + K +H++++
Sbjct: 422 SLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI 463
Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 138 IISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+I G ++ G+ ++A+ ++ + +PN T +S+L AC S S K GK IHAH +++
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 195 NENNIILDNAVLD 207
++++ ++ A+++
Sbjct: 61 FQSDVRVETALVN 73
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 11 PTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY 67
P + L ++H P H + N L++ ++ + LY +M +HY
Sbjct: 74 PAKALSVLRRLH------PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHY 127
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF LKAC + + G +HA V G ++F+ N L+ Y +A Q+F+ +
Sbjct: 128 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 187
Query: 128 V---FPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLGSR 180
D+V+W +I++ + G A+ MF + ++P+A +LV+VL AC+S+G+
Sbjct: 188 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 247
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
GK +H ++LR+ ++ + NAV+D
Sbjct: 248 SRGKQVHGYALRSGLFEDVFVGNAVVD 274
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY-------GHLHDIF 102
A+ ++ +M C S N T L C+LA G E H H IK+ D+
Sbjct: 351 ALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLM 410
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+ N+L+ Y K +A +F+ + D VVTWT +I G ++ G EA+++F +
Sbjct: 411 VINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ 470
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII-LDNAVLD 207
V PNA T+ L AC+ LG+ + G+ IHA+ LRN E+ ++ + N ++D
Sbjct: 471 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLID 523
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 49/187 (26%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF--- 124
+ L AC+ A +G ++H + ++ G D+F+ N+++ Y + A+++F
Sbjct: 233 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292
Query: 125 --------NSVV--------FPD----------------VVTWTTIISGLSKCGFHKEAI 152
N++V F D VVTW+ +I+G ++ G EA+
Sbjct: 293 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 352
Query: 153 DMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR---NLNEN----NII 200
D+F CG + PN TLVS+LS C+ G+ GK H H+++ NL+EN +++
Sbjct: 353 DVFRQMRLCGSE--PNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLM 410
Query: 201 LDNAVLD 207
+ NA++D
Sbjct: 411 VINALID 417
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
Q A+ L+++ML P ++ N +T + AL AC+ A + G +IHA+V++
Sbjct: 454 QHGEANEALELFSQMLQ-PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 512
Query: 100 D-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-- 156
+F+ N L+ Y D+ +A +F+++ + V+WT++++G G +EA+ +F
Sbjct: 513 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 572
Query: 157 -GIDVKPNANTLVSVLSACSSLG 178
+ + P+ T V VL ACS G
Sbjct: 573 QKVGLVPDGVTFVVVLYACSHSG 595
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 18/209 (8%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
TL+ NQI P + NTL++ ++S P A ++ +M + +++T+
Sbjct: 66 TLAVNVFNQIQD-----PDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPF 120
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
LKACS + IHA V K G DIF+ NSL+ Y + ++ A ++F+ + D
Sbjct: 121 LLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERD 180
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI-------------DVKPNANTLVSVLSACSSLG 178
V+W TI+ G K G A ++F + +K + T++S+LSAC+ G
Sbjct: 181 TVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSG 240
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLD 207
LGK +HA R + + + NA++D
Sbjct: 241 LLGLGKRVHASIERTRFKCSTPVSNALID 269
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKM----------LNCPSSY 64
+L + ++P+ + NT+L ++ A L+ KM + +
Sbjct: 165 ELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKF 224
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ T L AC+++ G +HA + + + N+L+ Y + +A IF
Sbjct: 225 DDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIF 284
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLG 178
+ +V DVV+W II GL+ G ++A+ +F G P+ T V VL AC+ G
Sbjct: 285 HGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAG 341
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 11 PTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY 67
P + L ++H P H + N L++ ++ + LY +M +HY
Sbjct: 93 PAKALSVLRRLH------PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHY 146
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF LKAC + + G +HA V G ++F+ N L+ Y +A Q+F+ +
Sbjct: 147 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 206
Query: 128 V---FPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLGSR 180
D+V+W +I++ + G A+ MF + ++P+A +LV+VL AC+S+G+
Sbjct: 207 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 266
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
GK +H ++LR+ ++ + NAV+D
Sbjct: 267 SRGKQVHGYALRSGLFEDVFVGNAVVD 293
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY-------GHLHDIF 102
A+ ++ +ML C S N T L C+ A G E H H IK+ D+
Sbjct: 370 ALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLM 429
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+ N+L+ Y K +A +F+ + D VVTWT +I G ++ G EA+++F +
Sbjct: 430 VINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ 489
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII-LDNAVLD 207
V PNA T+ L AC+ LG+ + G+ IHA+ LRN E+ ++ + N ++D
Sbjct: 490 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLID 542
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 49/187 (26%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF--- 124
+ L AC+ A +G ++H + ++ G D+F+ N+++ Y + A+++F
Sbjct: 252 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 311
Query: 125 --------NSVV--------FPD----------------VVTWTTIISGLSKCGFHKEAI 152
N++V F D VVTW+ +I+G ++ G EA+
Sbjct: 312 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 371
Query: 153 DMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR---NLNEN----NII 200
D+F CG + PN TLVS+LS C+S G+ GK H H+++ NL+EN +++
Sbjct: 372 DVFRQMLLCGSE--PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLM 429
Query: 201 LDNAVLD 207
+ NA++D
Sbjct: 430 VINALID 436
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
Q A+ L+++ML P ++ N +T + AL AC+ A + G +IHA+V++
Sbjct: 473 QHGEANEALELFSQMLQ-PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 531
Query: 100 D-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-- 156
+F+ N L+ Y D+ +A +F+++ + V+WT++++G G +EA+ +F
Sbjct: 532 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 591
Query: 157 -GIDVKPNANTLVSVLSACSSLG 178
+ + P+ T V VL ACS G
Sbjct: 592 QKVXLVPDGVTFVVVLYACSHSG 614
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QSS P+ ++ + +M N +++T L ACS + + G E+H +I+
Sbjct: 449 NALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIR 508
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F+ S+L Y+ ++ + +F+++ +V+W T+I+G + GF + A+ +
Sbjct: 509 NWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGL 568
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P ++++V ACS L S +LG+ HA++L++L E+N + +++D
Sbjct: 569 FRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIID 624
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
L K L Q +A I + + + +L++ + + + +P +++TF
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLP------------DNFTFPCV 193
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
+KAC+ GL +H V+K G + D+F+ N+L+ FY T + A ++F+ + ++
Sbjct: 194 IKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNL 253
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
V+W ++I S G + P+ T+V+VL C+ +GK +H +++
Sbjct: 254 VSWNSMIRVFSDNGDDGAFM---------PDVATVVTVLPVCAREREIGVGKGVHGWAVK 304
Query: 193 NLNENNIILDNAVLD 207
+ ++++NA++D
Sbjct: 305 LSLDKELVVNNALMD 319
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ P+ A+ L+ +M+ + ACSL + + G E HA+ +K
Sbjct: 550 NTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALK 609
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + FI S++ Y I + ++FN + +W +I G G KEAI +
Sbjct: 610 HLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKL 669
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + P+ T + VL+AC+ G
Sbjct: 670 FEEMQRTGRNPDDLTFLGVLTACNHSG 696
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L C+ G +H +K ++ + N+L+ Y I + IF
Sbjct: 278 TVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLN 337
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAID----MFCGI-DVKPNANTLVSVLSACSSLGSRKL 182
+VV+W T++ G S G D M G DVK + T+++ + C
Sbjct: 338 NNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPS 397
Query: 183 GKAIHAHSLRNLNENNIILDNA 204
K +H +SL+ + +L NA
Sbjct: 398 LKELHCYSLKQEFVYDELLANA 419
Score = 37.0 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGS 179
F+++ ++ W +IS S+ + E ++MF + K P+ T V+ AC+ +
Sbjct: 143 FDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISD 202
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+G A+H ++ ++ + NA++ F
Sbjct: 203 VGIGLAVHGLVVKTGLVEDLFVGNALVSF 231
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ QS + A+ LY M + T+ AL AC+ KG EIH+ + +
Sbjct: 277 NSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITE 336
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F+ ++++ Y ++ +A F + + VTW+ ++ + G+ +EA+D+
Sbjct: 337 SKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALDL 396
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNENNIILDNAVLDF 208
+ + +P+ TL L+ACS +G+ + GKAIH+ +N + L N++L+
Sbjct: 397 YLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNM 454
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF+ +CS ++ I A + ++ ++NSL+ Y D+ SA ++F
Sbjct: 9 NGVTFSGVASSCS---GREELDTIQASIAASDFHSNVVVKNSLVSAYTRSGDLRSARKVF 65
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+S+ D+++W +++ S+ G +E +++F +DV+P++ T S+L ACS++ +LGK
Sbjct: 66 DSIENKDLISWNSMVVAYSQHGHGEEMLELFRKMDVEPDSITYASILGACSAMELLELGK 125
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
+HA R+ +++ L A+++
Sbjct: 126 EVHARVSRSRFKSDPALAAALINM 149
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 88/187 (47%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ L Q + A+ L+ +M + ++ L AC +G
Sbjct: 166 IQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEG 225
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSK 144
+ IH H G D+ ++ ++ + Y + + A ++F+ + +VV+W ++I+ ++
Sbjct: 226 IRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQ 285
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA++++ + V+P+ T L AC+S G G IH+ + ++ L
Sbjct: 286 SGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFL 345
Query: 202 DNAVLDF 208
D A+++
Sbjct: 346 DTAIVNM 352
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 6/177 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q + + L+ KM P S T+ L ACS + G E+HA V +
Sbjct: 77 NSMVVAYSQHGHGEEMLELFRKMDVEPDSI---TYASILGACSAMELLELGKEVHARVSR 133
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D + +L++ Y + SA ++F+ + D W +ISGL + G +EA+ +
Sbjct: 134 SRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGL 193
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + V+ + + +++LSAC +L G IH H+ + +++++ AV +
Sbjct: 194 FERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVETAVFNM 250
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ Q + A+ LY +M++ + T AL ACS A Q+G IH+ +
Sbjct: 378 SAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQA 437
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L + +F+QNSLL+ Y + A+ +F+++ D +W TII G + G E +
Sbjct: 438 TETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTIIVGHAHHGDVDEVLS 497
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
+ + V P+ T VL ACS G G++
Sbjct: 498 LHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRS 532
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ Q+S A+ L+ +M T T L+AC+ + G++ H H+
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+L+ Y + A ++FN + DV+TW+T+ISGL++ G+ +EA+
Sbjct: 287 VKYDQ--DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLG 178
+F + KPN T+V VL ACS G
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAG 373
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 51/200 (25%), Positives = 100/200 (50%), Gaps = 10/200 (5%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F LN H ++PQ ++++ T++ ++ Q A+ L ML N YT++
Sbjct: 107 VKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYS 166
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L++C+ +H +IK G D+F++++L+ + + + A +F+ +V
Sbjct: 167 SVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
D + W +II G ++ A+++F + TL SVL AC+ L +LG H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283
Query: 188 AHSLRNLNENNIILDNAVLD 207
H ++ + ++IL+NA++D
Sbjct: 284 VHIVK--YDQDLILNNALVD 301
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+++ +K C A +G I H+ GH +F+ N L++ YV + AHQ+F+ +
Sbjct: 63 TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V++WTT+IS SKC H++A+++ + +V+PN T SVL +C+ + ++
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM-- 180
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H ++ E+++ + +A++D
Sbjct: 181 -LHCGIIKEGLESDVFVRSALID 202
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ Q+S A+ L+ +M T T L+AC+ + G++ H H+
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+L+ Y + A ++FN + DV+TW+T+ISGL++ G+ +EA+
Sbjct: 287 VKYDQ--DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLG 178
+F + KPN T+V VL ACS G
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAG 373
Score = 76.3 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 51/200 (25%), Positives = 100/200 (50%), Gaps = 10/200 (5%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F LN H ++PQ ++++ T++ ++ Q A+ L ML N YT++
Sbjct: 107 VKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYS 166
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L++C+ +H +IK G D+F++++L+ + + + A +F+ +V
Sbjct: 167 SVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
D + W +II G ++ A+++F + TL SVL AC+ L +LG H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283
Query: 188 AHSLRNLNENNIILDNAVLD 207
H ++ + ++IL+NA++D
Sbjct: 284 VHIVK--YDQDLILNNALVD 301
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+++ +K C A +G I H+ GH +F+ N L++ YV + AHQ+F+ +
Sbjct: 63 TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V++WTT+IS SKC H++A+++ + +V+PN T SVL +C+ + ++
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM-- 180
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H ++ E+++ + +A++D
Sbjct: 181 -LHCGIIKEGLESDVFVRSALID 202
>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
Length = 598
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL + + Q I L+ +M+ + ++F+ L + + + GL++HA ++K
Sbjct: 214 NTLLAGFARHWSVQGWI-LWRRMVREAVRADGFSFSTVLSGLAASTSLASGLQVHAQLVK 272
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ NSL+ Y+ K + F + DVV+WT + +G CG +AI +
Sbjct: 273 SGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAIGI 332
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ V PN+ T + +AC+SL G+ +H + ++ ++++I ++NA++D
Sbjct: 333 LSQMMLDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALIDM 389
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 45 STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
P AI + ++M+ N YTF + AC+ +G ++H +VIK G DI +
Sbjct: 324 GEPSKAIGILSQMMLDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVN 383
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
N+L+ Y + AH++F S+ V++WT +I G + G +EA+++F + V
Sbjct: 384 NALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLKGVA 443
Query: 162 PNANTLVSVLSACSSLG 178
PN T++ +L ACS G
Sbjct: 444 PNRVTMICILYACSQGG 460
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 41 LTQSSTPQNAIPLYNKM--LNCPSSYNHYTFTQALKACSLAHAHQK-GLEIHAHVIKYGH 97
L Q P++A+ L+ +M CP N + AL A S A A +++A ++ G
Sbjct: 118 LAQGGRPRDALALFIRMRLAGCPP--NEFALASALNASSFAPAGTGCARQLYALSVRLGF 175
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK----CGF------ 147
+F+ N+ L + A ++FN D+V+W T+++G ++ G+
Sbjct: 176 DSSVFLTNAFLAAMARHGQLEDAVRLFNGSSVRDIVSWNTLLAGFARHWSVQGWILWRRM 235
Query: 148 HKEAI--DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+EA+ D F + +T++S L+A +SL S G +HA +++ +++ + N++
Sbjct: 236 VREAVRADGF-------SFSTVLSGLAASTSLAS---GLQVHAQLVKSGFGDDVYVGNSL 285
Query: 206 LDF 208
++
Sbjct: 286 VEM 288
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
+F+ N LL Y + ++ + + + V+W+ I+GL++ G ++A+ +F + +
Sbjct: 77 VFLHNHLLIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMRL 136
Query: 161 K---PNANTLVSVLSACS-SLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209
PN L S L+A S + + ++A S+R ++++ L NA L M
Sbjct: 137 AGCPPNEFALASALNASSFAPAGTGCARQLYALSVRLGFDSSVFLTNAFLAAM 189
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ + A+ ++ +LN P + T L A + + +G +IH++++K
Sbjct: 381 NTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMK 440
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + FI N++++ Y D+ +A + F+ +V DVV+W T+I + GF + +I
Sbjct: 441 LGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQF 500
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
F G KPN +T VS+L+ACS G
Sbjct: 501 FSEMRGKGFKPNGSTFVSLLTACSISG 527
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113
+ +ML + + + AL ACS+ H + G+EIH VI+ DI +Q SL+ Y
Sbjct: 213 FKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGK 272
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSA 173
+ A ++FN + ++V W +I G+ + V P+ T++++L +
Sbjct: 273 CGKVDYAERVFNRIYSKNIVAWNAMIGGMQE------------DDKVIPDVITMINLLPS 320
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
CS G+ GK+IH ++R + ++L+ A++D
Sbjct: 321 CSQSGALLEGKSIHGFAIRKMFLPYLVLETALVD 354
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L +CS + A +G IH I+ L + ++ +L+ Y ++ A +FN +
Sbjct: 313 TMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQM 372
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
++V+W T+++ + +KEA+ MF I +KP+A T+ SVL A + L SR GK
Sbjct: 373 NEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGK 432
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IH++ ++ +N + NA++
Sbjct: 433 QIHSYIMKLGLGSNTFISNAIV 454
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 11/182 (6%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I N +++ T + Q AI Y +M +++TF +KAC A G ++H +
Sbjct: 91 IWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKL 150
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS-------GLSKC 145
IK G D+++ N L+ Y+ + I A ++F+ + D+V+W +++S GLS
Sbjct: 151 IKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSL 210
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
KE + + K + ++S L ACS + G IH +R+ E +I++ ++
Sbjct: 211 MCFKEMLRL----GNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSL 266
Query: 206 LD 207
+D
Sbjct: 267 ID 268
>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
Length = 495
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q A+ L+ KM N TF L AC+ A A ++G IH +
Sbjct: 45 STMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAAR 104
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + +L+ Y + A Q+F+ +V DVVTW+T+IS ++ G +EAI +
Sbjct: 105 KKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQL 164
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
F ++ V+PN L+S+L ACSS G+ GK H
Sbjct: 165 FGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTH 200
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q + AI L+ M N L ACS A A +G H V+
Sbjct: 146 STMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVI 205
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ N+L+ Y D+ SA +F + D+++W+ +++ +++ G K+A
Sbjct: 206 CGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVH 265
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F +D VKP+ T VS+L ACS LG+ G IH ++ + ++N+++D
Sbjct: 266 FRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGFQSVMYIENSLIDM 322
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
++ TF L ACSL A +G IH + G ++I+NSL+ Y + +A IF
Sbjct: 277 DYVTFVSLLDACSLLGALVEGNVIHTRIRAEGFQSVMYIENSLIDMYGKCGSLQAARGIF 336
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ + +V+TWTT+I+ + KEA+++F ++ V+P+ +S++ +CS G +
Sbjct: 337 DRMSHRNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVE 396
Query: 182 LGK 184
G+
Sbjct: 397 EGR 399
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
F+ NSLL+ Y + A + F S+ +V++W+T+++ ++ G H +A+ +F ++
Sbjct: 11 FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
V+PN T +SVL AC++ + + G+ IH + R + +I+ A++
Sbjct: 71 GVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALV 118
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ + S +P +AI LY M C S N YTF L AC +G E+
Sbjct: 30 PNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCEGQEL 89
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+ ++K G + + N L+ Y + A +F+ + PD +W+T++SG S+ G
Sbjct: 90 HSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQA 149
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
E + + + +V +A TL SV+ C LG LGK +H++ + + +++L A+
Sbjct: 150 VETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTAL 209
Query: 206 L 206
+
Sbjct: 210 V 210
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+P +T++ +Q+ + L +M S + +T + C
Sbjct: 127 EMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDL 186
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H+++ K G D+ + +L+ Y + +A ++F + DV TW+ +I+G +
Sbjct: 187 GKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAI 246
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
G ++A+ +F + + PN T SVLSA S G + G I
Sbjct: 247 HGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQI 291
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMF-CGIDVKPNANTLVSVLSAC 174
AH IF+ P++ W TII G S AI DMF CGI PN+ T VL+AC
Sbjct: 20 AHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGIS--PNSYTFGFVLNAC 77
Query: 175 SSLGSRKLGKAIHAHSLR 192
L G+ +H+ ++
Sbjct: 78 CKLLRLCEGQELHSQIVK 95
>gi|125554337|gb|EAY99942.1| hypothetical protein OsI_21945 [Oryza sativa Indica Group]
Length = 465
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 6/185 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQALKACSLAHAHQKGL 86
P + +L L + + +A+ L+ M + + ALKAC + + G
Sbjct: 87 PDSYAYRVMLGWLVGAGSHADAVALHRDMRRRCPAAARAEVVLSLALKACVRSADFRYGR 146
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H V+K G D F+ NSL+ Y D+ +A ++F+ V +VV+WT+++SG + G
Sbjct: 147 RLHCDVVKAGGA-DGFVMNSLVDMYAKSGDLENARKVFDRVPERNVVSWTSMLSGSIQNG 205
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
F +E + +F + +V P+ T+VSVL+AC+ LG G+ IH +++ N +
Sbjct: 206 FAEEGLVLFNEMRKDNVHPSEYTMVSVLAACAMLGCLHQGRWIHGSVIKDGLSTNSFISA 265
Query: 204 AVLDF 208
++LD
Sbjct: 266 SLLDM 270
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++L Q+ + + L+N+M + YT L AC++ +
Sbjct: 185 RVPERNVVSWTSMLSGSIQNGFAEEGLVLFNEMRKDNVHPSEYTMVSVLAACAMLGCLHQ 244
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH VIK G + FI SLL Y + + A ++F+ + F D+V WT +I G ++
Sbjct: 245 GRWIHGSVIKDGLSTNSFISASLLDMYAKCEKLEDARRVFDELEFVDIVLWTAMIVGYTQ 304
Query: 145 CGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+A+ +F + + PN+ T+ +V+SA + L LG++IHA ++ + ++
Sbjct: 305 NKSPLDALQLFLHKKFVSIVPNSVTIATVISASAQLHHLPLGRSIHAIGVKLGTMESDVV 364
Query: 202 DNAVLDF 208
NA++D
Sbjct: 365 RNALVDM 371
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ+ +P +A+ L+ N T + A + H G IHA +K G +
Sbjct: 303 TQNKSPLDALQLFLHKKFVSIVPNSVTIATVISASAQLHHLPLGRSIHAIGVKLGTMESD 362
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----C 156
++N+L+ Y + + A+ IF ++ DVV W ++++G S+ G E++ +F
Sbjct: 363 VVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQ 422
Query: 157 GIDVKPNANTLV 168
G+ K N N V
Sbjct: 423 GLPKKQNENKAV 434
>gi|297738075|emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
N I +Y++ML ++YT LKAC+ + G H +K G DIF+ N+L+
Sbjct: 13 NTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLI 72
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
Y + ++ +A IF+ + + V+WT +ISG +K KE + MF ++P+
Sbjct: 73 AMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFRLMQSTGLEPDEA 132
Query: 166 TLVSVLSACSSLGSRKLGKAIHAH 189
LVS+L AC+ LG+ ++G +H +
Sbjct: 133 ILVSILCACAHLGAMEIGVWVHRY 156
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC+ A + G+ +H ++ + GH + + L+ Y + A ++F+ + D
Sbjct: 138 LCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDT 197
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 173
+ W +ISG++ G A+ +F ++ VKP+ T +++ +A
Sbjct: 198 ICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTA 241
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 44/250 (17%)
Query: 2 FVNGLKSLKPTL----SFKQLNQIHAQIIK---IPQPHILNTLLKL-------------- 40
F++ L SL L + K QIH+Q+I + P + N LL L
Sbjct: 26 FLHPLTSLNSLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLF 85
Query: 41 -------------------LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81
LT+ P A+ +N M NHYTF+ L AC+ A
Sbjct: 86 SSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTA 145
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G ++H+ V K+G L ++F+ ++L+ Y D+ A ++F + ++V+W T+I G
Sbjct: 146 SVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVG 205
Query: 142 LSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
+ + +AI F + ++ + + SV SAC++ G+ + GK +H +L+ N
Sbjct: 206 FLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWN 265
Query: 198 NIILDNAVLD 207
+ ++N++ D
Sbjct: 266 LVYINNSLSD 275
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+++ L +C+ A +G IH +I+ G + ++ + +SL+ Y + A QIF
Sbjct: 335 SYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEET 394
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+VV WT II+ + G +++F + +KP+ T VSVLSACS G + G
Sbjct: 395 EDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEG 453
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT++ Q+ AI + +L ++ + +F+ AC+ A + G ++H +
Sbjct: 200 NTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVAL 259
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + ++I NSL Y ++F++ DVVTW +I +++A +
Sbjct: 260 KLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACN 319
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
F + K P+ + SVL +C++L + G IH +R+
Sbjct: 320 SFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRS 362
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 51 IPLYNKMLNCPSSYNHYTFTQALKA------CSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
+PL+ + S Y+ F L + CS H +IH+ +I L F+
Sbjct: 8 LPLHPNLSFFKSHYHQTPFLHPLTSLNSLLNCSRTSKH--ATQIHSQLITTALLSLPFLF 65
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPD----VVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
N+LL+ Y + +F+S PD VV+WT++I+ L++ +A+ F +
Sbjct: 66 NNLLNLYAKCGSVDQTLLLFSSA--PDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRR 123
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
V PN T +VLSAC+ + G+ +H+
Sbjct: 124 SGVYPNHYTFSAVLSACTDTTASVHGEQMHS 154
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 36/240 (15%)
Query: 5 GLKSLKPTLSFKQLNQIHAQIIKIP--QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
G + L+ ++ +++ + +IP + NT+++ L P +++ L+N++L
Sbjct: 24 GRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNELLLGCL 83
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-----HLHDIFI-------------- 103
++YT+T LKACS A +G ++H +IK G H+H I
Sbjct: 84 KPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAEC 143
Query: 104 ------------QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+NS++ Y++ + A +F+ + DV +W+ II+G +K G H EA
Sbjct: 144 VLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEA 203
Query: 152 IDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +F + V PN + LVS+LSAC+ LG+ G+ IHA+ R + +I L A++D
Sbjct: 204 LALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDM 263
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T++ A+ L+ M+ + N L AC+ A +G IHA++ + G I
Sbjct: 195 TKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSI 254
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ +L+ Y DI S ++ F + D+VTW IISG + G K+ ++F +
Sbjct: 255 RLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLAD 314
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGK 184
+ PN V++LSACS G + GK
Sbjct: 315 GIYPNGVIFVAILSACSHAGYVEEGK 340
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L H I + IL NTL+ + T++ P+ A+ L+ +M + Y+ +L A
Sbjct: 551 LRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSA 610
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C Q G +IH ++IK G+ +D F+QN+L+ Y + SA+++F + +VTW
Sbjct: 611 CGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTW 669
Query: 136 TTIISGLSKCGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
++I G S+ G+ EAI +F C VK + T +SV+ ACS LG + GK +H
Sbjct: 670 NSMICGFSQNGYSVEAITLFDQMYMNC---VKMDKLTFLSVIQACSHLGYLEKGKWVHHK 726
Query: 190 SLRNLNENNIILDNAVLD 207
+ + LD A+ D
Sbjct: 727 LIMYGLRKDSYLDTALTD 744
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ +Q+ AI L+++M +NC + TF ++ACS +KG +H +I
Sbjct: 670 NSMICGFSQNGYSVEAITLFDQMYMNC-VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI 728
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
YG D ++ +L Y ++ AH +F+ + +V+W+ +I+G G I
Sbjct: 729 MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATIS 788
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+F G +KPN T + +LSACS G+ + GK
Sbjct: 789 LFNQMLGSGIKPNDITFMHILSACSHAGAVEEGK 822
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 83 QKGLEIHAHVIKYGHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
++G +H VI+ ++ F+ +L+ Y ++ H++F ++ +++W T+IS
Sbjct: 516 KEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISI 575
Query: 142 LSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ G +EA+ +F + + P++ +L S LSAC ++ +LG IH + ++ N N+
Sbjct: 576 FTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND 635
Query: 199 IILDNAVLD 207
+ NA++D
Sbjct: 636 FV-QNALID 643
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLS---KCGFHKEAIDMFCGI---DVKPNANTLVSV 170
++ ++ VFP V+ + LS K G E +DMF + V+P++ T++SV
Sbjct: 438 VYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSV 497
Query: 171 LSACSSLGSRKLGK 184
ACS LGS +LG+
Sbjct: 498 TEACSELGSLRLGR 511
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ A+ L+ +M+ N + L AC + G + V++
Sbjct: 197 NSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVE 256
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ ++L+H Y D+ SA +IF+S+ D VTW +I+G ++ G +EAI +
Sbjct: 257 NKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKL 316
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + + P+ TL+ +LSAC+S+G+ LGK + ++ ++++ + A++D
Sbjct: 317 FQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDM 373
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 34/232 (14%)
Query: 9 LKPTLSFKQLNQIHAQII------------KI------------------PQPHILNTLL 38
L+ LS KQL QIHAQ++ KI P + N ++
Sbjct: 39 LQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMI 98
Query: 39 KLLTQSSTPQN-AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ L+ + + A+ Y++M N+ T+ ACS A + G H VI+ G
Sbjct: 99 RGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGL 158
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
D + +SL+ Y + A ++F+ + D+V+W ++ISG SK EA+ +F
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +PN +LVSVL AC LG KLG + + N N + +A++
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALI 270
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + AI L+ M ++ + T L AC+ A G ++ + +
Sbjct: 298 NAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASE 357
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ +L+ Y + +A ++F + + V+W +IS L+ G +EA+ +
Sbjct: 358 RGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALAL 417
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F G V PN T V VLSAC G G+ +
Sbjct: 418 FKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRL 454
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ A+ L+ +M+ N + L AC + G + V++
Sbjct: 197 NSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVE 256
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ ++L+H Y D+ SA +IF+S+ D VTW +I+G ++ G +EAI +
Sbjct: 257 NKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKL 316
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + + P+ TL+ +LSAC+S+G+ LGK + ++ ++++ + A++D
Sbjct: 317 FQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDM 373
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 34/232 (14%)
Query: 9 LKPTLSFKQLNQIHAQII------------KI------------------PQPHILNTLL 38
L+ LS KQL QIHAQ++ KI P + N ++
Sbjct: 39 LQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMI 98
Query: 39 KLLTQSSTPQN-AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ L+ + + A+ Y++M N+ T+ ACS A + G H VI+ G
Sbjct: 99 RGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGL 158
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
D + +SL+ Y + A ++F+ + D+V+W ++ISG SK EA+ +F
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +PN +LVSVL AC LG KLG + + N N + +A++
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALI 270
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + AI L+ M ++ + T L AC+ A G ++ + +
Sbjct: 298 NAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASE 357
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ +L+ Y + +A ++F + + V+W +IS L+ G +EA+ +
Sbjct: 358 RGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALAL 417
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F G V PN T V VLSAC G G+ +
Sbjct: 418 FKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRL 454
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ LTQ+ A+ ++ +M + YTF L AC A ++G +IHA+ I+
Sbjct: 251 TMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRT 310
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ +IF+ ++L+ Y + I A +F + ++++WT +I G + G +EA+ +F
Sbjct: 311 LYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVF 370
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ +KPN TL SV+S+C++L S + G H +L
Sbjct: 371 SEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMAL 409
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 70/117 (59%), Gaps = 11/117 (9%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
+ ++ + N+++ + K + A +F ++V D +TWTT+++GL++ G EA+D+F
Sbjct: 212 VKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRR 271
Query: 156 -----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
GID T S+L+AC +L + + GK IHA+++R L + NI + +A++D
Sbjct: 272 MRAEGVGID----QYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVD 324
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++++M N +T + +C+ + ++G + H + G I
Sbjct: 359 QNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYIT 418
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ ++L+ Y I AH++F+ + F D V++T ++SG ++ G KE ID+F +
Sbjct: 419 VSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKG 478
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
VKPN T + VLSACS G + G + + HS++ + ++LD+
Sbjct: 479 VKPNGVTFIGVLSACSRSGLVEKGCS-YFHSMQQ-DHGIVLLDD 520
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG------------F 147
++F +N+LL + + ++F S+ D V++ +I+G S G
Sbjct: 75 NLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALL 134
Query: 148 HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+EA+ G V+P+ T+ ++ A S+LG R LG+ +H +R
Sbjct: 135 REEAV--VDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMR 177
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ LY +M N+ TF ALKACS + G ++ A + G D+ +LL+
Sbjct: 504 ALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGFETDVVTDTALLN 563
Query: 110 FYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
Y D+ +A ++F S DVV WT +I+ ++ G +EA+ ++ + ++KPN+
Sbjct: 564 MYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNS 623
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T SVLSACSSLG+ G+ IH+ E ++ + N++L
Sbjct: 624 VTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSLL 665
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 90/175 (51%), Gaps = 1/175 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+T++ QS AI +Y M + S N TF + AC+ +G+++H ++
Sbjct: 289 STMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLV 348
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D+ + ++L+ YV + A + F+ V DV+ W ++S S+ G ++ I+
Sbjct: 349 SLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIE 408
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +DV+PNA T +VL ACS++ G+ +H+ + + E ++ ++ A+L
Sbjct: 409 AYEAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSL 463
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 6/176 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L ++ +PQ I Y M P N T+T L ACS +G ++H+ ++
Sbjct: 391 NFMLSAYSERGSPQQVIEAYEAMDVEP---NAVTYTNVLIACSAMEDLAQGQKVHSRIVS 447
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ ++ +LL Y+ + + SA Q+F ++ DV+ W ++ G EA+ +
Sbjct: 448 SGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYIDHDCDTEALRL 507
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + V+ N T + L ACS + + G + A E +++ D A+L+
Sbjct: 508 YARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGFETDVVTDTALLN 563
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ LY ML+ N T+T L ACS +G +IH+ + D+
Sbjct: 600 QAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDVA 659
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM-----FCG 157
+QNSLL Y + A F + DV +WT +++ + G A+++ CG
Sbjct: 660 VQNSLLSMYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVREMELCG 719
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKA 185
V P+A T SVL ACS GS + G A
Sbjct: 720 --VSPDAVTFQSVLHACSHEGSLERGWA 745
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G++ + +QN+L++ Y D+ A ++FN + DV++W+T+IS ++ G H EAI+++
Sbjct: 249 GYMSHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIY 308
Query: 156 ----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
V+PNA T V V+ AC+ G G +H
Sbjct: 309 RLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHG 345
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
++A G+L +++ +N L+ + + + ++F+ + +V +W+ +I ++ G
Sbjct: 45 LYARFTGTGYLDNVYFRNWLIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGH 104
Query: 148 HKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
EA +F ++ ++PNA T + VL ACS GK +HA+
Sbjct: 105 RNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGKKVHAY 149
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ A L+ +M + N T L ACS + G ++HA++ DI
Sbjct: 101 QNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDIS 160
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP 162
+Q SL++ Y A +F+S+ D+VTW + G + + VKP
Sbjct: 161 LQTSLVNMYAKCGSPADAKAVFDSMARKDIVTWNAMAGASVHNGQSHKLLREMDLQGVKP 220
Query: 163 NANTLVSV------LSACSSLGSRKLGKAIHAH 189
NA T S+ L+ C ++ R L +H
Sbjct: 221 NATTYASITRGSSTLTGCRAMEQRLLASGYMSH 253
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 47/253 (18%)
Query: 3 VNGLKSLKPTL-----SFKQLNQIHAQII---KIPQPHIL--NTLLKLLTQSSTPQNAIP 52
V+GL + P S+ ++QI+ ++ +IP P + N +++ LT + P +++
Sbjct: 50 VSGLLARPPNAGRLLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDSLL 109
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY- 111
LYNK+L + ++YT+T LK CS A +G ++H VIK G D I SL+H Y
Sbjct: 110 LYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYA 169
Query: 112 ------------------------------VTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
++ + A +F+ + D TW+ +I+G
Sbjct: 170 KSDCLACAEGVLAECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITG 229
Query: 142 LSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+K G H+EA+ MF + V+PN + LVS LSA + LG+ G+ IHA+ R
Sbjct: 230 YTKNGMHEEALVMFREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGA 289
Query: 196 ENNIILDNAVLDF 208
+ +I L ++D
Sbjct: 290 KISITLGTGLVDM 302
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 42 TQSSTPQNAIPLYNKML---NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL 98
T++ + A+ ++ +M+ N N +L A + A +G IHA++ + G
Sbjct: 231 TKNGMHEEALVMFREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAK 290
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--- 155
I + L+ Y I ++++F + DVVTW ++SG + G ++ +F
Sbjct: 291 ISITLGTGLVDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEM 350
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+PN V++LSACS G +LG
Sbjct: 351 VAGGTRPNEVIFVAILSACSHAGYLELG 378
>gi|357149296|ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 789
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLL 108
A+ L +M+ + + F+ AL+AC+ + + G ++H K G++ D+F+ N LL
Sbjct: 90 ALVLLLRMMAWSLRPDGFVFSVALRACAAIGSQRFGRQLHCAAAKMGYVGADLFVANGLL 149
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y + + + A ++FN + PD+V+WT+++SG ++ G H EA+ +F + ++ +A
Sbjct: 150 TMYASCRSLGCAEKVFNGIATPDLVSWTSMLSGYTENGCHAEAVMLFVEMVHAGIRCDAF 209
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
TL L A SSL + LG +H ++ N+ L+N +++F
Sbjct: 210 TLSVALRAASSLANLSLGHQLHCCIIKLGFSNSGFLENCLIEF 252
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Query: 20 QIHAQIIKI---PQPHILNTLLKLLTQSST---PQNAIPLYNKMLN----CPSSYNHYTF 69
+IH +I+ H+++ L+ + +T Q +PL +ML ++ +
Sbjct: 330 EIHGYLIRAGLDSDKHVMSALMDMYVNWATLHKAQCVLPL--RMLRYHLLVQGKFDQFIV 387
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+L++C+ G +HA+++K D F+ +SL+ Y + +H +F++ +
Sbjct: 388 ASSLRSCASDLDLAAGRMLHAYILKLNMNSDAFVTSSLVDMYAKCGCLEESHLLFSTTKY 447
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
P W+ +ISG G + A+ +F + V+PN T SVL+AC LG G I
Sbjct: 448 PGTAEWSAVISGNCLNGQFERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDVVGGIEI 507
Query: 187 HAHSLRN 193
H +S+RN
Sbjct: 508 HGNSVRN 514
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++L T++ A+ L+ +M++ + +T + AL+A S G ++H +IK
Sbjct: 178 SMLSGYTENGCHAEAVMLFVEMVHAGIRCDAFTLSVALRAASSLANLSLGHQLHCCIIKL 237
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID-- 153
G + F++N L+ FY ++ ++F+ + D+V+ T+I + ++A+
Sbjct: 238 GFSNSGFLENCLIEFYGKSSELHLMQKVFDDMDDKDLVSSNTVIQCYADNMCDEQALSHF 297
Query: 154 ---MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
MF G + + TL S+L + G+ G IH + +R
Sbjct: 298 RAMMFEGSEC--DEFTLGSILHVVTRRGAFDYGMEIHGYLIR 337
Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+TL+K +Q+ + L++ + ++ T L +C +GL+ HA++ K
Sbjct: 554 DTLVKEFSQAGDHIGVLNLFHVIQRSGGVLDYPTACHILTSCGKLKLLCEGLQAHAYLTK 613
Query: 95 YGHLHDIFIQNSLLHFYV---TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
G I + L+ Y TVKD F A F + + WT++I + G + A
Sbjct: 614 RGLASKPCISSHLIDMYSKCGTVKDAFDA---FRYMSDKNASCWTSVIIAHLENGCPEIA 670
Query: 152 IDMFCGIDVK---PNANTLVSVLSACSSLG 178
ID+F + K P + +SVL AC+ +G
Sbjct: 671 IDLFVQMLRKEKIPTSLAFLSVLKACAEVG 700
Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 104 QNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
Q SLL + + A Q+F+++ P +V WT I+SG + G EA+ + +
Sbjct: 41 QYSLLRAHTRAGRMEPARQVFDAMPPPARSLVAWTAIMSGYATHGPASEALVLLLRMMAW 100
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++P+ L AC+++GS++ G+ +H
Sbjct: 101 SLRPDGFVFSVALRACAAIGSQRFGRQLH 129
Score = 40.4 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ +M N +T+T L AC G+EIH + ++ G+ + SL
Sbjct: 467 ERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDVVGGIEIHGNSVRNGYGTHASVVKSL 526
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NA 164
+ FY+ A ++ S+ + ++W T++ S+ G H +++F I +
Sbjct: 527 ISFYLREGQFHQALKLCLSLSNRE-ISWDTLVKEFSQAGDHIGVLNLFHVIQRSGGVLDY 585
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHS 190
T +L++C L + L + + AH+
Sbjct: 586 PTACHILTSCGKL--KLLCEGLQAHA 609
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 99/187 (52%), Gaps = 3/187 (1%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+++ P N+++ A+ L+ +M N YTF AL+AC +
Sbjct: 210 LMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKI 269
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IHA ++K H D+++ N+L+ Y + A ++F S++F D V+W T++SG+ +
Sbjct: 270 GRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQ 329
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ +AI+ F + KP+ +++++++A + G +HA+++++ ++N+ +
Sbjct: 330 NDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHI 389
Query: 202 DNAVLDF 208
N+++D
Sbjct: 390 GNSLIDM 396
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + AI LY +M S + +TF LKAC + G EIH +K
Sbjct: 117 NAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVK 176
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAI 152
G+ +F+ N+L+ Y D+ A +F+S + D V+W +IIS G EA+
Sbjct: 177 CGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEAL 236
Query: 153 DMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + V+ N T VS L AC K+G+ IHA L++ + ++ + NA++
Sbjct: 237 SLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALI 293
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L ACS + + EIH +V+K G L DI IQN++++ Y + + A +F S+ D+
Sbjct: 460 LLACSGLKSEKLIKEIHGYVLK-GGLADILIQNAIVNVYGELALVDYARHVFESINSKDI 518
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT++I+ G EA+++F + +++P+ TLVSVL A ++L S K GK IH
Sbjct: 519 VSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGF 578
Query: 190 SLR 192
+R
Sbjct: 579 LIR 581
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL + Q+ +AI + M + + + + A + G+E+HA+ IK
Sbjct: 321 NTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIK 380
Query: 95 YGHLHDIFIQNSLLHFY---VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+G ++ I NSL+ Y VK + SA F + D+++WTTII+G ++ H +A
Sbjct: 381 HGIDSNMHIGNSLIDMYGKCCCVKYMGSA---FEYMPEKDLISWTTIIAGYAQNECHLDA 437
Query: 152 IDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+++ + DV P + S+L ACS L S KL K IH + L+ +I++ NA++
Sbjct: 438 LNLLRKVQLEKMDVDP--MMIGSILLACSGLKSEKLIKEIHGYVLKG-GLADILIQNAIV 494
Query: 207 D 207
+
Sbjct: 495 N 495
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+N ++ + T L A + + +KG EIH +I+ G + I NSL+
Sbjct: 536 EALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLV 595
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTII--SGLSKCGFHKEAIDMFCGI---DVKPN 163
Y + +A IFN V D++ WT++I +G+ CG K+AID+F + +V P+
Sbjct: 596 DMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCG--KDAIDLFSKMTDENVLPD 653
Query: 164 ANTLVSVLSACSSLGSRKLGK 184
T +++L ACS G GK
Sbjct: 654 HITFLALLYACSHSGLVVEGK 674
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIK-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
++QAL+ C+ A +G ++HAH +K +L +F+ +H Y + A ++F+
Sbjct: 48 AYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDK 107
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLG 183
+ + TW +I G + EAI+++ + V +A T VL AC + R+LG
Sbjct: 108 MSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLG 167
Query: 184 KAIHAHSLR 192
IH +++
Sbjct: 168 CEIHGVAVK 176
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L++ + + L+ M + + ++YTF KAC + + G HA +
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++F+ N+L+ Y + + A ++F+ + DVV+W +II +K G K A++M
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEM 215
Query: 155 FCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +P+ TLV+VL C+SLG+ LGK +H ++ + N+ + N ++D
Sbjct: 216 FSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY-------GHLHDIF 102
A+ + +ML+ N T L C+ A G EIH + IKY GH +
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+ N L+ Y K + +A +F+S+ DVVTWT +I G S+ G +A+++ +
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
+PNA T+ L AC+SL + ++GK IHA++LRN N + + N ++D
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLID 521
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 43/199 (21%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N++++ + P+ A+ ++++M N C ++ T L C+ H G ++H
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRP--DNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 92 VIKYGHLHDIFIQNSLLHFY---------------VTVKDIFS----------------A 120
+ + ++F+ N L+ Y ++VKD+ S A
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 314
Query: 121 HQIFNSV----VFPDVVTWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSA 173
++F + + DVVTW+ ISG ++ G EA+ + +KPN TL+SVLS
Sbjct: 315 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG 374
Query: 174 CSSLGSRKLGKAIHAHSLR 192
C+S+G+ GK IH ++++
Sbjct: 375 CASVGALMHGKEIHCYAIK 393
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 42 TQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK-YGHL 98
+Q A+ L ++M +C + N +T + AL AC+ A + G +IHA+ ++ +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG- 157
+F+ N L+ Y I A +F++++ + VTWT++++G G+ +EA+ +F
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570
Query: 158 --IDVKPNANTLVSVLSACSSLG 178
I K + TL+ VL ACS G
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSG 593
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 7/176 (3%)
Query: 16 KQLNQIHAQII--KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
K +Q HA+ + +P+ ++++ T++ Q P+ A+ ++ +M +
Sbjct: 156 KAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLS 215
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L AC A G +H V++ G +I + NS++ Y+ I A ++F +
Sbjct: 216 VLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKS 275
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
VVTWTT+I+G + G +A++MFC ++ + PNA T +++LSACS +G LG+
Sbjct: 276 VVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGR 331
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ D+ N ++ YV D A ++F+++ +VV+WTT+I G ++ ++A+++F
Sbjct: 141 VRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRR 200
Query: 158 IDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ V + + L+SVL+AC LG+ LG+ +H +R I L N+++D
Sbjct: 201 MQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDM 254
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL Q + + L M +H T T L + +++ G +IH ++K
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI + N+L++ Y + A ++F+S+ PD+++W+++I G ++ G KEA ++
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFEL 592
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
F G+ VKPN T V +L+ACS +G + G ++ R + E+
Sbjct: 593 FRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY----RTMQED 634
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ ++ NAI LY +ML +H+TF +K+CS + ++HAHV+K
Sbjct: 169 SMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKS 228
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI--- 152
D+ QN+L+ Y + A +F+ ++ D+++W ++I+G S+ G+ EA+
Sbjct: 229 EFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHF 288
Query: 153 -DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+M +PN S SACS L G+ IH
Sbjct: 289 REMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHG 325
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSS-YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
+ A+ ++ C SS T+T + ACS + + G +IH H++ + D+ +QN
Sbjct: 79 REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PN 163
+L Y + A +F+S+ +VV+WT++ISG S+ G AI ++ + P+
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S++ +CS L KL + +HAH L++ ++I NA++
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALI 241
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F A ACS G +IH IK+G D+F SL Y + SA +F
Sbjct: 300 NEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
+ PD+V W II+G + KE+ F + + PN T++S+L ACS
Sbjct: 360 YHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSE 414
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ S + + +++M + N T L ACS G
Sbjct: 362 IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGL-- 142
+++H++++K G DI + NSLL Y ++ A Q+F + D+V+W T+++
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481
Query: 143 -SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
++ G + +KP+ TL +VL + + S ++G IH +++ +I +
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISV 541
Query: 202 DNAVLD 207
NA+++
Sbjct: 542 SNALIN 547
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ Q + + A L+ +M+ S N ++ + L+AC+ G +IH H IK G
Sbjct: 704 MISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIG 763
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
H ++F+ N+L+ Y D+ S+ +IF+S+ + V+W TII G SK GF + A+ +F
Sbjct: 764 HESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFR 823
Query: 157 GIDVKPNANTLV---SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +T V SVL AC+S S +H ++ ++ I+ N+++D
Sbjct: 824 EMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLID 877
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ +++ P+N + +++KM S N + T L+A + G IHA +K
Sbjct: 603 MVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTL 662
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ + + +LL Y +I A F V DV+ W+ +IS ++C +++A ++F
Sbjct: 663 YDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFI 722
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ V PN +L SVL AC+++ LGK IH H+++ +E+ + + NA++D
Sbjct: 723 RMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDL 777
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++S + A+ ++ +M T++ L+AC+ + ++H + K
Sbjct: 803 NTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEK 862
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS---KCGFHKEA 151
D + NSL+ Y I A +IF ++ D+V+W IISG + + +E
Sbjct: 863 STFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQEL 922
Query: 152 IDMFCGIDVKPNANTLVSVLSACSSLG 178
DM +K N T V++LS C S G
Sbjct: 923 FDMMSKNSIKANDITFVALLSVCGSTG 949
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + T LK +HA K GH + F+ ++L+ Y + A ++F
Sbjct: 530 NQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVF 589
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRK 181
+ +V D V WT ++S S+ + + +F + V K N L SVL A L S
Sbjct: 590 DGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVV 649
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
LGK IHA S++ L + + A+LD
Sbjct: 650 LGKGIHACSVKTLYDTERHVYGALLD 675
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH--DIFIQNSLLHFYVTVKDIFSAHQ 122
+ Y + + L+ C + G +H HV++ G L D+F N LL+ Y V SAH+
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSL 177
+F+ + ++V++ T++ G + G +EA +F G +V N L +VL ++
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEV--NQFVLTTVLKLVVAM 544
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ L +HA + + ++ N + +A++D
Sbjct: 545 DTLGLAWGVHACACKLGHDRNAFVGSALID 574
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+AI L+ +M + S + Y+ T L AC+ ++ KG ++H ++ K + + N+L+
Sbjct: 738 DAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALM 797
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANT 166
Y + A+ +F+ + D+V+W T+I G SK EA+ +F + + +P+ T
Sbjct: 798 DMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGIT 857
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +L AC SL + ++G+ IH LRN + + + NA++D
Sbjct: 858 MACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALID 898
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+ ++ +I I+ + + N ++ + + +I L+ KM + N YTF+ L
Sbjct: 501 ALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCIL 560
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
K + + IH V K G + NSL+ Y ++ SAH++F+ + DVV
Sbjct: 561 KCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVV 620
Query: 134 TWTTIISGLSKCGFHKEAIDMF-------CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+W ++ISG GF A++ F G+D+ TLV+ ++AC+++GS LG+A+
Sbjct: 621 SWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLA----TLVNSVAACANVGSLSLGRAL 676
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H ++ ++ +N +LD
Sbjct: 677 HGQGVKACFSREVMFNNTLLD 697
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP I+ NT++ +++S P A+ L+ +M S + T L AC A +
Sbjct: 815 QIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDGITMACLLPACGSLAALEI 873
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH +++ G+ ++ + N+L+ YV + A +F+ + D++TWT +ISG
Sbjct: 874 GRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGM 933
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EAI F + +KP+ T S+L ACS G
Sbjct: 934 HGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSG 970
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + +A+ + +ML + T ++ AC+ + G +H +K
Sbjct: 623 NSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVK 682
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ N+LL Y ++ A Q F + VV+WT++I+ + G + +AI +
Sbjct: 683 ACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRL 742
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ V P+ ++ SVL AC+ S G+ +H + +N + + NA++D
Sbjct: 743 FYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMD 798
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + S +I L+ +ML N YTF+ LK + ++G ++H + K
Sbjct: 220 NLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICK 279
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + NSL+ FY + + A ++F+ + DV++W ++ISG K G I++
Sbjct: 280 LGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEI 339
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL------RNLNENNIILD 202
F G+D+ + T+V+V AC+++G+ LGK +H++S+ R + NN +LD
Sbjct: 340 FIKMLVFGVDI--DLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLD 396
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+++M + + Y T L AC++ + G +H ++ + + F+ N+L
Sbjct: 438 AIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTD 497
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTL 167
Y + AH +F+ + DV++W T+I G +K EA+ +F + + KP+ T+
Sbjct: 498 MYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTV 557
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+L AC+SL + G+ IH ++LRN + + NAV+D
Sbjct: 558 ACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVD 597
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ T++S P A+ L+ +M S + T L AC+ A KG EIH + ++
Sbjct: 524 NTMIGGYTKNSLPNEALTLFAEMQR-ESKPDGTTVACILPACASLAALDKGREIHGYALR 582
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D ++ N+++ YV + A +F+ + D+V+WT +I+G G+ EAI+
Sbjct: 583 NGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINT 642
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + ++P+ + +S+L ACS G
Sbjct: 643 FNQMRMTGIEPDEVSFISILYACSHSG 669
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ I ++ KML + T AC+ G +H++ IK
Sbjct: 321 NSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIK 380
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L ++ N+LL Y D+ SA ++F + VV+WT++I+G + G AI
Sbjct: 381 AATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIK 440
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + V P+ + S+L+AC+ G+ K GK +H + N E N + NA+ D
Sbjct: 441 LFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTD 497
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + L+N+M N YT+ + AC+ A +G H +IK G + SL
Sbjct: 236 EEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSL 295
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNA 164
L YV DI +A ++FN D+V WT +I G + G EA+ +F G+ +KPN
Sbjct: 296 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNC 355
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T+ SVLS C +G+ +LG++IH S++
Sbjct: 356 VTIASVLSGCGLVGNLELGRSIHGLSIK 383
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T + + A+ L+ KM N T L C L + G IH IK G + D
Sbjct: 331 THNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVG-IWDT 389
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
+ N+L+H Y A +F D+V W +IISG S+ G EA+ +F ++
Sbjct: 390 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTE 449
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR--NLNENNIILDNAVLDF 208
V PN T+ S+ SAC+SLGS +G ++HA+S++ L +++ + A+LDF
Sbjct: 450 SVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDF 501
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ + A+ L+++M N T AC+ + G +HA+ +K
Sbjct: 424 NSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVK 483
Query: 95 YGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G L + + +LL FY D SA IF+++ + +TW+ +I G K G K ++
Sbjct: 484 LGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSL 543
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
++F + KPN +T SVLSACS G GK + ++ N
Sbjct: 544 ELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDYN 589
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P ++ +L+ ++ I Y+ ++ Y+ F++ALKAC+
Sbjct: 113 QIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDN 172
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++K ++ + LL Y +I S++++F + +VV WT++I+G K
Sbjct: 173 GKKIHCQIVKVPSFDNVVL-TGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVK 231
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
++E + +F + V N T +++ AC+ L + GK H +++ E + L
Sbjct: 232 NDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCL 291
Query: 202 DNAVLD 207
++LD
Sbjct: 292 VTSLLD 297
>gi|255580945|ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529124|gb|EEF31104.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 12/184 (6%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P +I NT++ L+ S+T Q PLYN ML+ + +T L S H + ++
Sbjct: 95 PNLYIYNTMISALS-SATAQ---PLYNSMLSTGIGPDKHTLLYLLH--SARHVSEVK-QV 147
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H I G ++QNSL+ Y+ AH+IF + PDVV++ +I+G +K G
Sbjct: 148 QCHAIILGLSTYRYLQNSLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAKQGCG 207
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA--HSLRNLNENNIILDN 203
EAI + +D+KP+ T++ +L +C LG + GK +HA +++ +N+IL N
Sbjct: 208 LEAIQLLYDMMALDLKPDEFTMLGLLVSCGKLGEARFGKTVHAWIERRKSITSSNLILGN 267
Query: 204 AVLD 207
A+LD
Sbjct: 268 ALLD 271
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N+ T + A + A +G H VI+ D + ++L+ Y I +A IF
Sbjct: 359 NNTTMASLISAAAEIGALDQGRWAHGWVIRMQIKIDAVLGSALIDMYCKCGSINNAFLIF 418
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLG 178
N ++ DV+ WTT+I+G + G+ +A+++F + +V PN T VSVL+ACS G
Sbjct: 419 NEIIEKDVILWTTMITGFAFHGYGSKALELFYEMQANVTPNEITFVSVLAACSHSG 474
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H ++P P ++ N ++ + AI L M+ + +T L +C
Sbjct: 180 HKIFRQMPAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKPDEFTMLGLLVSCGKL 239
Query: 80 HAHQKGLEIHAHVIKYGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ G +HA + + + ++ + N+LL YV +++ AH+ F+++ DVV+W T
Sbjct: 240 GEARFGKTVHAWIERRKSITSSNLILGNALLDMYVKCQELDLAHRTFSALTEKDVVSWNT 299
Query: 138 IISGLSKCGFHKEAIDMF----------------------------------CGIDVKPN 163
II+G +K G + A +F +V PN
Sbjct: 300 IIAGCAKAGDLELARTLFDQMPCRDFVSWNSLIAEYANRGDFIIVRDLLYDMVAENVVPN 359
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T+ S++SA + +G+ G+ H +R + + +L +A++D
Sbjct: 360 NTTMASLISAAAEIGALDQGRWAHGWVIRMQIKIDAVLGSALID 403
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ LTQ++ + A+ L +M + +N +T + L C+ A + +++HA IK
Sbjct: 113 NTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIK 172
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ +LLH Y I A Q+F S+ + VTW+++++G + GFH+EA+ +
Sbjct: 173 AAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLI 232
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F G D P + S +SAC+ L + GK +HA S ++ +NI + ++++D
Sbjct: 233 FRNAQLMGFDQDP--FMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDM 289
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ C+ + G HA +I+ G DI N L++ Y + SA + FN + +
Sbjct: 50 LQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSL 109
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAH 189
V+W T+I L++ +EA+ + + + N T+ SVL C+ + +HA
Sbjct: 110 VSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAF 169
Query: 190 SLRNLNENNIILDNAVL 206
S++ ++N + A+L
Sbjct: 170 SIKAAIDSNCFVGTALL 186
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ + A+ AC+ +G ++HA K G +I++ +SL+ Y I A+ +F
Sbjct: 246 FMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQG 305
Query: 127 VV-FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKL 182
V+ +V W +ISG ++ EA+ +F + + P+ T V VL+ACS +G +
Sbjct: 306 VLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEE 365
Query: 183 GK 184
G+
Sbjct: 366 GQ 367
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL Q + + L M +H T T L + +++ G +IH ++K
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI + N+L++ Y + A ++F+S+ PD+++W+++I G ++ G KEA ++
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFEL 592
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
F G+ VKPN T V +L+ACS +G + G ++ R + E+
Sbjct: 593 FRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY----RTMQED 634
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ ++ NAI LY +ML +H+TF +K+CS + ++HAHV+K
Sbjct: 169 SMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKS 228
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI--- 152
D+ QN+L+ Y + A +F+ ++ D+++W ++I+G S+ G+ EA+
Sbjct: 229 EFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHF 288
Query: 153 -DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+M +PN S SACS L G+ IH
Sbjct: 289 REMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHG 325
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSS-YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
+ A+ ++ C SS T+T + ACS + + G +IH H++ + D+ +QN
Sbjct: 79 REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PN 163
+L Y + A +F+S+ +VV+WT++ISG S+ G AI ++ + P+
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S++ +CS L KL + +HAH L++ ++I NA++
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALI 241
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F A ACS G +IH IK+G D+F SL Y + SA +F
Sbjct: 300 NEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
+ PD+V W II+G + KE+ F + + PN T++S+L ACS
Sbjct: 360 YHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSE 414
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ S + + +++M + N T L ACS G
Sbjct: 362 IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGL-- 142
+++H++++K G DI + NSLL Y ++ A Q+F + D+V+W T+++
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481
Query: 143 -SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
++ G + +KP+ TL +VL + + S ++G IH +++ +I +
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISV 541
Query: 202 DNAVLD 207
NA+++
Sbjct: 542 SNALIN 547
>gi|115445617|ref|NP_001046588.1| Os02g0290000 [Oryza sativa Japonica Group]
gi|47847947|dbj|BAD21737.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536119|dbj|BAF08502.1| Os02g0290000 [Oryza sativa Japonica Group]
Length = 930
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA-HAHQKGLEIHAHVI 93
N+++ +++ + A+ L+ +M++ N+ T L CSL + G EIH V+
Sbjct: 271 NSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVV 330
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
++G DI + N+L+ Y V ++ + IF S D+VTW T+I+G + A+
Sbjct: 331 RHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALK 390
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN---LNENNIILDNAVLD 207
+F G+ + P++ +L+S+L+AC+ +G+ ++G +H + R+ L E +++ NA++
Sbjct: 391 LFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLM--NALVS 448
Query: 208 F 208
F
Sbjct: 449 F 449
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIF 124
T L C+ + G IH +VIK G D N+L+ Y + AH F
Sbjct: 200 TVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAF 259
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG-SR 180
+++ DVV+W +II+G S+ G +EA+ +F + + PN +TL +VL CS + R
Sbjct: 260 STICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGR 319
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVL 206
GK IH +R+ E +I + NA++
Sbjct: 320 HYGKEIHGFVVRHGLEMDISVSNALM 345
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N + +L Q+ A L++++ + + + + T L AC + Q + H ++++
Sbjct: 607 NLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLR 666
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L DI ++ +LL Y +I +A+ +F + D+V +T +I + G ++A+++
Sbjct: 667 -ASLEDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVEL 725
Query: 155 FCG---IDVKPNANTLVSVLSACSSLG 178
F +D+KP+ L ++LSACS G
Sbjct: 726 FSKMLTLDIKPDHVVLTALLSACSHAG 752
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +K G+ + +++ Y + + AH +F+ + D V +I+ S+ G
Sbjct: 116 LHGLAVKVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGL 175
Query: 148 HKEAIDMF-----CGIDVK-PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ + +F G+D P A T+ VL C+ L + G++IH + ++ E + +
Sbjct: 176 YNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLS 235
Query: 202 DNAVL 206
NA++
Sbjct: 236 GNALV 240
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + P A+ L+ +L + + + L AC+ + G+ +H ++ +
Sbjct: 373 NTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFR 432
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ L + + N+L+ FY +A + F ++ D V+W I+S + H E
Sbjct: 433 HPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFF 492
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G DV + + + S+ K+ + H +SLR + + NA+LD
Sbjct: 493 RLLGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILD 549
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 94 KYGHLHD------------IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
K G+LHD I N+++ Y+ + A FN + D+ TW +
Sbjct: 553 KCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRL 612
Query: 142 LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ +A +F + + P+ ++ ++LSAC L S +L K H + LR E +
Sbjct: 613 YAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE-D 671
Query: 199 IILDNAVLD 207
I L+ A+LD
Sbjct: 672 IHLEGALLD 680
>gi|449442080|ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ +Q + AI +++ ML+ N ++ LKAC + G ++H +IK
Sbjct: 258 SMITSCSQQGLGREAISMFSNMLSDEFLPNEFSVCSVLKACGEERELKIGRQLHGLIIKK 317
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+D+F+ SL+ Y ++ + ++F+ + + VTWT+II+G ++ G +EA+++F
Sbjct: 318 IIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAGYAREGLGEEALNLF 377
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + N T+VS+L AC S+ + G+ +HA ++N + NI + + ++ F
Sbjct: 378 RLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTLVWF 433
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L++ + N F L C+ + G +IH ++K G+ ++ + +++
Sbjct: 170 EEALALFSDSVKSGVLANGQMFVCILNLCAKRLDFELGRQIHGVIVK-GNRGNLIVDSAI 228
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
++FY KDI SA F + DVV WT++I+ S+ G +EAI MF + + PN
Sbjct: 229 IYFYAQCKDISSAFVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFSNMLSDEFLPNE 288
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ SVL AC K+G+ +H ++ + +N++ + +++D
Sbjct: 289 FSVCSVLKACGEERELKIGRQLHGLIIKKIIKNDVFVGTSLVD 331
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ M N+ T L+AC A G E+HA ++K +I I ++L
Sbjct: 371 EEALNLFRLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTL 430
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ FY ++ A + + DVV+WT IISG + G EA++ + V+PN+
Sbjct: 431 VWFYCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGVEPNS 490
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S L AC+ + + GK IH+ + + +N+ + +A++
Sbjct: 491 FTYSSTLKACAKMEAVLQGKMIHSSANKTSALSNVFVGSALI 532
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA +++ I++ N+LL Y+ + + A ++F+ + VVTWT II+G
Sbjct: 109 VHAFILRNFTSFGIYVGNNLLSSYLRLGMLVDARKVFDEMPMRSVVTWTAIINGYIDLDL 168
Query: 148 HKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+EA+ +F V N V +L+ C+ +LG+ IH ++ N N+I+D+A
Sbjct: 169 TEEALALFSDSVKSGVLANGQMFVCILNLCAKRLDFELGRQIHGVIVKG-NRGNLIVDSA 227
Query: 205 VLDF 208
++ F
Sbjct: 228 IIYF 231
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T++ LKAC+ A +G IH+ K L ++F+ ++L++ Y + A Q+F
Sbjct: 489 NSFTYSSTLKACAKMEAVLQGKMIHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVF 548
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+S+ ++V+W +I ++ G +EA+ +
Sbjct: 549 DSMPVRNLVSWKAMILCYARNGLCREALKL 578
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ LTQ+ + A+ + +M + +TF L AC A +G +IHA++I+
Sbjct: 240 TIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRT 299
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ +IF+ ++LL Y +++ A +F + +V++WT ++ G + G+ +EA+ +F
Sbjct: 300 DYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIF 359
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
C + ++ P+ TL SV+S+C++L S + G H +L
Sbjct: 360 CDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQAL 398
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 35/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+LL + ++ +YN ML S + N TF+ L S G +IH +
Sbjct: 106 NSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIF 165
Query: 94 KYGHLHDIFIQNSLLHFYVTV-------------------------------KDIFSAHQ 122
K+G+ +F+ + L+ Y + I A Q
Sbjct: 166 KFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQ 225
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGS 179
+F+++ D ++WTTII+GL++ G KEA+D F + ++ + T SVL+AC +
Sbjct: 226 LFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLA 285
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
GK IHA+ +R ++NI + +A+LD
Sbjct: 286 LDEGKQIHAYIIRTDYQDNIFVGSALLD 313
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++ M + +T + +C+ + ++G + H + G + +
Sbjct: 348 QNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVT 407
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ N+L+ Y + AHQ+F+ + D V+WT ++SG ++ G E I +F +
Sbjct: 408 VSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHG 467
Query: 160 VKPNANTLVSVLSACSSLG 178
+ P+ T V VLSACS G
Sbjct: 468 IVPDGVTFVGVLSACSRAG 486
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
SS N+YT ALK C A + ++H +I+ + F+ N+L++ Y + D+ +A
Sbjct: 3 SSSNYYT--AALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNAR 60
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRK 181
+F+ + P++ +W T++S SK G+ ++ +F D PN + + + +SL S
Sbjct: 61 NVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVF---DSMPNHDVV-----SWNSLLSGY 112
Query: 182 LGKAIHAHSLRNLN 195
G + + S+R N
Sbjct: 113 AGNGLISESVRVYN 126
>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 11/174 (6%)
Query: 41 LTQSSTPQNAIPLYNKMLNC-----PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
L Q + A+ L+ +M+ C P+S T+ + AC+ A A +G++IHAHV K
Sbjct: 176 LDQHGRSEEALGLFRQMMGCGVEVKPTSS---TYCCVITACANASALYQGVQIHAHVFKL 232
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G+ D +I +L+ FY K + + ++F+ + +VV WT +++G H++A+ +F
Sbjct: 233 GYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVF 292
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ V PN ++ S L++C L + G+ IH +++ E ++ + N+++
Sbjct: 293 GEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI 346
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ ++ +M+ N +FT AL +C A G EIH +K G D+F+ NSL
Sbjct: 286 EDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSL 345
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ IF + ++V+W ++I G ++ G A+ F + V+P+
Sbjct: 346 IVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDE 405
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T +LSACS G + G+ + + N
Sbjct: 406 ITFTGLLSACSHSGMSQKGRCLFKYFSEN 434
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
DI NS+++ Y + ++F + +V++WT++I GL + G +EA+ +F
Sbjct: 132 FRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 191
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
CG++VKP ++T V++AC++ + G IHAH +
Sbjct: 192 MMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFK 231
>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 11/174 (6%)
Query: 41 LTQSSTPQNAIPLYNKMLNC-----PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
L Q + A+ L+ +M+ C P+S T+ + AC+ A A +G++IHAHV K
Sbjct: 160 LDQHGRSEEALGLFRQMMGCGVEVKPTSS---TYCCVITACANASALYQGVQIHAHVFKL 216
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G+ D +I +L+ FY K + + ++F+ + +VV WT +++G H++A+ +F
Sbjct: 217 GYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVF 276
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ V PN ++ S L++C L + G+ IH +++ E ++ + N+++
Sbjct: 277 GEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI 330
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ ++ +M+ N +FT AL +C A G EIH +K G D+F+ NSL
Sbjct: 270 EDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSL 329
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ IF + ++V+W ++I G ++ G A+ F + V+P+
Sbjct: 330 IVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDE 389
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T +LSACS G + G+ + + N
Sbjct: 390 ITFTGLLSACSHSGMSQKGRCLFKYFSEN 418
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
DI NS+++ Y + ++F + +V++WT++I GL + G +EA+ +F
Sbjct: 116 FRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
CG++VKP ++T V++AC++ + G IHAH +
Sbjct: 176 MMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFK 215
>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Brachypodium distachyon]
Length = 594
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 10/166 (6%)
Query: 28 IPQP---HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+PQP + N+LL+ T + A+ LY+ M S++H TF A KAC +
Sbjct: 1 MPQPVPVSLANSLLRSYTGLGHYREAVALYSGM----RSFDHLTFPFAAKACGGLRLSRH 56
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H + G D ++QN+L+ Y+ D+ +A +F ++ VV+W +I+G K
Sbjct: 57 GRAVHCRALAAGFGDDTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAGCVK 116
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+ A+++F G + + T+VSVL AC+ + +G+A+H
Sbjct: 117 NDCAERALEVFGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAVH 162
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ ++ +M + + T L AC+ A G +H V +
Sbjct: 108 NAVIAGCVKNDCAERALEVFGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEE 167
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAID 153
G ++N+L+ Y +++ A ++F+ + DVV+WT +I +EA
Sbjct: 168 RGLADYAAVKNALIDMYGKCRNLEGARKVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFA 227
Query: 154 ------MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
M G PN T+ +LSACS L R K +HA +R E++II++ A++D
Sbjct: 228 LGHEMLMTSGAPW-PNGVTMAYLLSACSRLSGRH-AKCMHAMCIRLGLESDIIVETALMD 285
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
+ N + T + + AI L +M+ + + T L A + + ++ IH
Sbjct: 306 RTETWNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYAESADVRQATNIH 365
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
+++ G L I L++ Y D+ + +F+ + DVV WTT+I+G G +
Sbjct: 366 CYLLTLGFLRSTEITTGLINVYAKAGDLDVSWSLFDGLPEKDVVAWTTVIAGYGMHGQAQ 425
Query: 150 EAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
+I ++ + VKPN T S+L ACS +G
Sbjct: 426 TSILLYNRMVQLGVKPNTVTFASLLYACSHVG 457
>gi|302785117|ref|XP_002974330.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
gi|300157928|gb|EFJ24552.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
Length = 720
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL----EIHA 90
NT++ ++ + A+ ++++M + YT AL C +GL EIH
Sbjct: 64 NTMIATYARNGFGEEAVEVFHEMALVGIPPDKYTLISALDGCCGLSCPDRGLKKGREIHR 123
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+ G + D+ +Q L+ Y ++ A ++F+ + +TW +I+ + GF E
Sbjct: 124 RIQSIGFMSDVALQTGLIKMYGKFGEVIEARRLFDGMSRRVALTWARMITAYGQNGFGNE 183
Query: 151 AIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
AI+++ IDV P+ SVL ACSS + + GK IHA + E + +++N +LD
Sbjct: 184 AIELYKQIDVVPDKVIFASVLDACSSAMNLEEGKRIHARIVEGKFEIDTVVNNTLLDL 241
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC A G ++HA V ++G D+ + N+L++ Y A +F+ + D
Sbjct: 1 LDACVSLKALSDGRDVHASVTRHGFGSDLVLGNALINMYSKCSSPADARNVFDGMTVRDS 60
Query: 133 VTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG----SRKLGKA 185
V+W T+I+ ++ GF +EA+++F + + P+ TL+S L C L K G+
Sbjct: 61 VSWNTMIATYARNGFGEEAVEVFHEMALVGIPPDKYTLISALDGCCGLSCPDRGLKKGRE 120
Query: 186 IH 187
IH
Sbjct: 121 IH 122
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 16/165 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTFTQALKACS------LAHAHQKGLE 87
N++++ + P+ A+ L+ +M C + ++ AL ACS L H G
Sbjct: 269 NSIIRAHLHNDQPKEALGLFFEMQEACGPRQDRVSYVSALDACSAMGSDGLVH----GKT 324
Query: 88 IHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H +I +H D+++ +L+ Y D+ A Q+F+ + + VTWT++I G S G
Sbjct: 325 LHG-LILANRIHIDVYVGTALVTMYGRCGDVVEAKQVFDVMPSKNAVTWTSMIRGYSTNG 383
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F +EA+++F ++ + + V+V+ A + K+ IH+
Sbjct: 384 FAREAVEVFQKMEQEGCRADKIVYVAVMEASRGVEDVKMAAKIHS 428
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ AI LY ++ P + F L ACS A ++G IHA +++ D
Sbjct: 177 QNGFGNEAIELYKQIDVVP---DKVIFASVLDACSSAMNLEEGKRIHARIVEGKFEIDTV 233
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMF----- 155
+ N+LL Y + A +F+S+ DVV+W +II KEA+ +F
Sbjct: 234 VNNTLLDLYGMCGCLEEAKAVFHSMQEQGRDVVSWNSIIRAHLHNDQPKEALGLFFEMQE 293
Query: 156 -CGIDVKPNANTLVSVLSACSSLGSRKL--GKAIHAHSLRN 193
CG + + + VS L ACS++GS L GK +H L N
Sbjct: 294 ACG--PRQDRVSYVSALDACSAMGSDGLVHGKTLHGLILAN 332
Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + + L+ M + TF L A + + + + ++
Sbjct: 476 NAMIAAYSRRGDKEAVLELFQAMQAASVRPDRATFL-GLLAVGGSFSPSEASAVQHAILS 534
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + +LL+ + A ++F+ + DVV+WT+++ + G EAID+
Sbjct: 535 TGMETDSLVGTALLNTLTRSGKVGEARRVFDRLDKRDVVSWTSMMVAYASHGSSLEAIDL 594
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLG 183
F + ++ P+ ++VL AC+ G + G
Sbjct: 595 FQEMQLQGMEPDEVAFLAVLFACNHAGFFRRG 626
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 38/204 (18%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P + N +++ + S P+ A Y +ML+ +N YTF L+AC A +
Sbjct: 48 ITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEA 107
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV------------------ 127
L++H VIK G D+F N+LLH Y +I A Q+F+++
Sbjct: 108 LQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKS 167
Query: 128 --------VFPD-----VVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVS 169
VF D VV+WT++ISGL + G EA+ + G ++ + + S
Sbjct: 168 GDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFEL--DGVAIAS 225
Query: 170 VLSACSSLGSRKLGKAIHAHSLRN 193
+L+AC++LG+ G+ +H + L N
Sbjct: 226 LLTACANLGALDQGRWLHFYVLNN 249
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L+ L ++ A+ L +M N + L AC+ A +G +H +V+
Sbjct: 190 SLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNN 249
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAID 153
G D I +L++ YV D+ A +F + DV WT +I G + G EA++
Sbjct: 250 GVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALE 309
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
F + ++PN+ T +VL ACS G + GK +
Sbjct: 310 WFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKEL 345
>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial; Flags: Precursor
gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 787
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L A+ L+ +M+ + +T ++ AC A G +IH HVI+
Sbjct: 374 NSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIR 433
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D F+QNSL+ Y + SA +FN + VVTW +++ G S+ G EAI +
Sbjct: 434 -TDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISL 492
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ N T ++V+ ACSS+GS + GK +H H L ++ D A++D
Sbjct: 493 FDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVH-HKLIISGLKDLFTDTALID 547
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 97/182 (53%), Gaps = 4/182 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK-GLE 87
P + L+K AI LY+++++ + + + F L+AC+ + H G +
Sbjct: 63 PDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGK 122
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +IK G D I+ SLL Y ++ A ++F+ + D+V W+T++S + G
Sbjct: 123 VHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGE 182
Query: 148 HKEAIDMF-CGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+A+ MF C +D V+P+A T++SV+ C+ LG ++ +++H R + + + L N+
Sbjct: 183 VVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNS 242
Query: 205 VL 206
+L
Sbjct: 243 LL 244
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+TL+ ++ A+ ++ M++ + T ++ C+ + +H + +
Sbjct: 171 STLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITR 230
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D + NSLL Y D+ S+ +IF + + V+WT +IS ++ F ++A+
Sbjct: 231 KMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRS 290
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + ++PN TL SVLS+C +G + GK++H ++R
Sbjct: 291 FSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVR 331
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L +Q+ AI L++ M + N TF ++ACS + +KG +H +I
Sbjct: 474 NSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLII 533
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L D+F +L+ Y D+ +A +F ++ +V+W+++I+ G AI
Sbjct: 534 SG-LKDLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAIST 592
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + KPN ++VLSAC GS + GK
Sbjct: 593 FNQMVESGTKPNEVVFMNVLSACGHSGSVEEGK 625
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L L +S A + +M++ ++ T+ L C+ Q GL+IHA ++K
Sbjct: 198 NSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLK 257
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+F+ ++L+ Y ++ +A + F+ + +VV WT +++ + G +E +++
Sbjct: 258 TGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNL 317
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + D +PN T +L+AC+SL + G +H + + +N++I+ NA+++
Sbjct: 318 FTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINM 374
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 49 NAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ L+ +++ S+Y N Y FT L C+ + ++G + H +++K G L +++N+L
Sbjct: 110 EVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNAL 169
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG-ID--VKPNA 164
+H Y + SA QI ++V DV ++ +I+S L + G EA + +D V ++
Sbjct: 170 IHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDS 229
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T VSVL C+ + +LG IHA L+
Sbjct: 230 VTYVSVLGLCAQIRDLQLGLQIHAQLLK 257
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + + L+ KM + N +TF L AC+ A G +H ++ G + +
Sbjct: 307 QNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLI 366
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGI 158
+ N+L++ Y +I S++ +F++++ DV+TW +I G S G K+A+ DM
Sbjct: 367 VGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAG 426
Query: 159 DVKPNANTLVSVLSACSSLG 178
+ PN T + VLSAC L
Sbjct: 427 EC-PNYVTFIGVLSACVHLA 445
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 73 LKACSLAHAHQKGLEIHAHVI---KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
LK + A + + G IHA ++ + DI NSL++ Y A ++F+ ++
Sbjct: 30 LKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQ 89
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKA 185
+VV+W+ ++ G G E + +F + PN VLS C+ G K GK
Sbjct: 90 RNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQ 149
Query: 186 IHAHSLRN 193
H + L++
Sbjct: 150 CHGYLLKS 157
>gi|125529041|gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group]
Length = 916
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT++ +++ S + A ++ +L+ S T + +C G +H+ ++
Sbjct: 438 NTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFIL 497
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAI 152
KYG L + NSL+H Y+ D +A + S+ D+++W T I G + G + +A+
Sbjct: 498 KYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPMSDIISWNTAIVGCVQNGLYGDAL 557
Query: 153 DMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ F + + P++ TLVSVLS C +L + LGK+IH +L+ L E N+ + NA+L
Sbjct: 558 EAFQFMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALL 615
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L C G IH +K ++ ++N+LL Y D SA IF+S+
Sbjct: 575 TLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSL 634
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-VKPNANTLVSVLSACSSLGSRKLGKAI 186
V ++ +W +ISG ++ A+ + ++ +PN ++V ++ AC+ LG + GK I
Sbjct: 635 VGRNLCSWNCMISGFAQNNEGLRALQFYKKMEYFEPNEISIVGIICACTQLGDLRQGKNI 694
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H H +R + N+ + +++D
Sbjct: 695 HGHVVRFGLQTNVFISASLVD 715
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++K L ++ A+ ++ +M + + T + AC +G E+H ++IK
Sbjct: 337 NAMIKGLVENDRVNEAMCMFQEM-RSKNQPDVATLVTIISACGDRGLLPEGKEVHGYIIK 395
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC-GFHKEAI 152
GH+++ + NSLL Y+ D +A +F ++ D+++W T+ISG S+ +EA
Sbjct: 396 KGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAK 455
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
MF G+ + +T+V+V+ +C GK++H+ L+
Sbjct: 456 AMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILK 498
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVIKYGHLHDIF-IQNSLLHFY 111
+ +M+ + + + L ACS L G +H+ VIK G+ ++NSL+ FY
Sbjct: 253 FKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFY 312
Query: 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK--PNANTLVS 169
+ +A ++F S ++VTW +I GL + EA+ MF + K P+ TLV+
Sbjct: 313 YELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKNQPDVATLVT 372
Query: 170 VLSACSSLGSRKLGKAIHAHSLR 192
++SAC G GK +H + ++
Sbjct: 373 IISACGDRGLLPEGKEVHGYIIK 395
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q++ A+ Y KM N + + AC+ ++G IH HV++
Sbjct: 643 NCMISGFAQNNEGLRALQFYKKMEYFEP--NEISIVGIICACTQLGDLRQGKNIHGHVVR 700
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++FI SL+ Y + + ++F S + W ++IS G ++I++
Sbjct: 701 FGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLGLKSIEI 760
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ VK +T +++LSACS G
Sbjct: 761 FWKMNNSGVKATRSTFIALLSACSHSG 787
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 68 TFTQALKACSLAHAHQKG--LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+ +AL AC A + +H +K + D ++ S++ Y V+D+ SA Q+F+
Sbjct: 63 SIVRALGACRGASREEADGVAALHCAALKSAAVLDPPVRTSVITAYSRVRDVCSALQVFD 122
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGIDVKP--NANTLVSVLSACSSLGSRKL 182
PD++ W IS L+ + +A+ +F +DV ++ ++V +LS S S +
Sbjct: 123 EAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVFDSTSMVIMLSGASRARSLEH 182
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
G A H +L+ + ++ L N ++D
Sbjct: 183 GIAFHGMALKRRLDTDLSLWNTLMD 207
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 5/185 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N + LT + +A+ L+ M++ ++ + L S A + + G+
Sbjct: 127 PDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVFDSTSMVIMLSGASRARSLEHGIAF 186
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K D+ + N+L+ Y D +S+ +F + + D +W +++SG G
Sbjct: 187 HGMALKRRLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLA 246
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR-KLGKAIHAHSLR-NLNENNIILDN 203
+ + F + + + +L VLSACS L G+++H+ ++ + ++N
Sbjct: 247 EISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVEN 306
Query: 204 AVLDF 208
+++ F
Sbjct: 307 SLITF 311
>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g04780-like [Glycine max]
Length = 632
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ NT + LTQ++ + A+ L +M + +N +T + L C+ A + +++HA
Sbjct: 118 LXNTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFS 177
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK + F+ +LLH Y I A Q+F S+ + VTW+++++G + GFH EA+
Sbjct: 178 IKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEAL 237
Query: 153 DMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F G D P + S +SAC+ L + GK +HA S ++ +NI + ++++D
Sbjct: 238 LLFHNAQLMGFDQDP--FNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLID 295
Query: 208 F 208
Sbjct: 296 M 296
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ + A+ AC+ +G ++HA K G +I++ +SL+ Y I A+ +F
Sbjct: 253 FNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEG 312
Query: 127 VV-FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKL 182
V +V W +ISG ++ +EA+ +F + + P+ T VSVL+ACS +G +
Sbjct: 313 FVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEE 372
Query: 183 GK 184
G+
Sbjct: 373 GQ 374
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA +I G H+ F+ NSL++ YV + A QIF+ + +VV+WT +ISGL+K
Sbjct: 42 QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKND 101
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
EAID+F + + KPNA T+ SVL A ++LG ++ K++H +R E N+ ++
Sbjct: 102 CFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVET 161
Query: 204 AVLD 207
A++D
Sbjct: 162 ALVD 165
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + + AI L+N M + YT + A Q G IH +I+
Sbjct: 192 NAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR 251
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ +D I+ +L+ YV+ + AH++F+ + DV WT +++G S AI
Sbjct: 252 TGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKH 311
Query: 155 F---CGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F GI ++K ++ L+ +LS+CS G+ + G+ +HA +++ NNI + +AV+D
Sbjct: 312 FNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 48 QNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
AI +NKML + + L +CS + A Q+G +HA IK ++IF+ ++
Sbjct: 306 DRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSA 365
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPN 163
++ Y ++ A + F + DVV W +I+G G+ +AID+F G + P+
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPD 425
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+T VSVL ACS G G I H ++
Sbjct: 426 ESTFVSVLYACSHAGMVYEGLQIFYHMVK 454
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPH-------ILNT---------------------- 36
LK LKP L QIHAQII H ++N
Sbjct: 34 LKDLKP------LQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNV 87
Query: 37 -----LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
L+ L ++ AI ++ +M+ N T + L A + + +H
Sbjct: 88 VSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCF 147
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ G ++F++ +L+ Y + A Q+F S+ +VVTW I+SG S GF +EA
Sbjct: 148 WVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEA 207
Query: 152 IDMFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
ID+F + K + T++S++ A S+G ++G IH +R EN+ + A++D
Sbjct: 208 IDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMD 266
>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
Length = 495
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ + A+ L+ +M + TF AL AC+ A G +HA++ +
Sbjct: 210 NTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGR 269
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH D + N+LL Y + A ++F+ + DV T+T++I GL+ G ++A+ +
Sbjct: 270 MGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSL 329
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F G+ V PN TL+ VL+AC G
Sbjct: 330 FAGMQRAGVTPNEVTLLGVLTACCHAG 356
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G E H V + D+ N+L+ + VK +VV+W T++S ++
Sbjct: 173 GREAHRRVAERKVAMDVVAWNALVDMRMPVK--------------KNVVSWNTMMSAFAR 218
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+ +F + V+P+ T V+ L AC+ LG+ G+ +HA+ R + + ++
Sbjct: 219 AGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVV 278
Query: 202 DNAVLDF 208
NA+LD
Sbjct: 279 GNALLDM 285
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 94/179 (52%), Gaps = 4/179 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q + + L+ KM C + ++ +T + LK C+ + ++G +HA ++
Sbjct: 20 NALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALR 79
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ SL+ Y ++ A ++F + PDVV W+ +I+GL + G +EA ++
Sbjct: 80 SGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAEL 139
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLDFM 209
F + +PN TL S++S +++G + G++IH + +N++ + ++ +M
Sbjct: 140 FHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYM 198
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KI P ++ + ++ L Q Q A L++ M + N +T + + + +
Sbjct: 111 KIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRY 170
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL-- 142
G IH + KYG D + N L+ Y+ + + +++F ++ PD+V+W ++SG
Sbjct: 171 GQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYD 230
Query: 143 -SKCG-----FHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
CG F++ ++ F KPN T +SVL +CSSL + GK +HAH ++N ++
Sbjct: 231 SQTCGRGPRIFYQMLLEGF-----KPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSD 285
Query: 197 NNIILDNAVLD 207
++ + A++D
Sbjct: 286 DDDFVGTALVD 296
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL S T ++ +ML N +TF L++CS + G ++HAH+IK
Sbjct: 222 NALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIK 281
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D F+ +L+ Y + + A F+ +V D+ +WT IISG ++ ++A+
Sbjct: 282 NSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKY 341
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + +KPN TL S LS CS + + + G+ +HA +++ + +I + +A++D
Sbjct: 342 FRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDL 398
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ + +M N YT L CS + G ++HA +K GH DIF
Sbjct: 331 QTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIF 390
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID---MFCGID 159
+ ++L+ Y + A IF ++ D+V+W TIISG S+ G ++A++ M
Sbjct: 391 VGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEG 450
Query: 160 VKPNANTLVSVLSACSSLGSRKLGK 184
+ P+ T + VLSACS +G + GK
Sbjct: 451 IMPDEATFIGVLSACSFMGLVEEGK 475
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A ++F + + V+W +++G ++ G K+ + +FC + + K + TL +VL C++
Sbjct: 4 AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
GS + GK +HA +LR+ E + L +++D
Sbjct: 64 TGSLREGKVLHALALRSGCEIDEFLGCSLVD 94
>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 681
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + P +AI +Y +M + ++AC+ A + G +H H+++
Sbjct: 178 STMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D+ SL+ Y + A ++F +V + V+W+ +ISG ++ G EA+ +
Sbjct: 238 HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRL 297
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P++ LVS L ACS++G KLG+++H +R + N IL A +D
Sbjct: 298 FRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRF-DFNCILGTAAID 352
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 88/169 (52%), Gaps = 4/169 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
++ +P +A+ ++ + L + + TFT AL AC+ + G + G+ D+
Sbjct: 85 SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ +SLLH Y + A ++F + D VTW+T+++G G +AI M+ +
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VK + ++ V+ AC++ + ++G ++H H LR+ +++ +++D
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ Q+ A+ L+ M + AL ACS + G +H +++
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ I + + + Y + SA +FN + D++ W +I+ G ++A+ +
Sbjct: 339 RFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ ++P+ T S+LSA S G + GK
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430
>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
Length = 681
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + P +AI +Y +M + ++AC+ A + G +H H+++
Sbjct: 178 STMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D+ SL+ Y + A ++F +V + V+W+ +ISG ++ G EA+ +
Sbjct: 238 HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRL 297
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P++ LVS L ACS++G KLG+++H +R + N IL A +D
Sbjct: 298 FRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRF-DFNCILGTAAID 352
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
++ +P +A+ ++ + L + + TFT AL AC+ + G + G+ D+
Sbjct: 85 SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ +SLLH Y + A ++F+ + D VTW+T+++G G +AI M+ +
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VK + ++ V+ AC++ + ++G ++H H LR+ +++ +++D
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ Q+ A+ L+ M + AL ACS + G +H +++
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ I + + + Y + SA +FN + D++ W +I+ G ++A+ +
Sbjct: 339 RFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ ++P+ T S+LSA S G + GK
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430
>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
Length = 787
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + P +AI +Y +M + ++AC+ A + G +H H+++
Sbjct: 178 STMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G D+ SL+ Y + A ++F +V + V+W+ +ISG ++ G EA+ +
Sbjct: 238 HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRL 297
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P++ LVS L ACS++G KLG+++H +R + N IL A +D
Sbjct: 298 FRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRF-DFNCILGTAAID 352
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 88/169 (52%), Gaps = 4/169 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
++ +P +A+ ++ + L + + TFT AL AC+ + G + G+ D+
Sbjct: 85 SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ +SLLH Y + A ++F + D VTW+T+++G G +AI M+ +
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VK + ++ V+ AC++ + ++G ++H H LR+ +++ +++D
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ Q+ A+ L+ M + AL ACS + G +H +++
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ I + + + Y + SA +FN + D++ W +I+ G ++A+ +
Sbjct: 339 RFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ ++P+ T S+LSA S G + GK
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGK 430
>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 852
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 88/162 (54%), Gaps = 5/162 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ KM +HYTF L C + G +H VIK G + + N+L
Sbjct: 398 EEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRI--DGKSVHCLVIKTGFENYKLVSNAL 455
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y +D+ A+ +F + DV++WT++++G ++ G H+E++ FC + V P+
Sbjct: 456 VDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQ 515
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ S+LSAC+ L + GK +H+ ++ +++ ++N+++
Sbjct: 516 FIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLV 557
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 6/180 (3%)
Query: 32 HILNT-LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
H+L T ++ Q+ AI + M N +TF L ACS AH G ++H
Sbjct: 280 HVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHG 339
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+++ G + ++Q++L+ Y D+ SA ++ ++ DVV+W ++I G + GF +E
Sbjct: 340 CIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEE 399
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
AI +F + ++K + T SVL+ C + R GK++H ++ EN ++ NA++D
Sbjct: 400 AILLFKKMHARNMKIDHYTFPSVLNCC--IVGRIDGKSVHCLVIKTGFENYKLVSNALVD 457
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A L+ +M + YT L+ CS QKG IH +V+K G ++++ L+
Sbjct: 196 AFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVD 255
Query: 110 FYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
Y + I A +F + F + V WT +++G ++ G +AI+ F + V+ N
Sbjct: 256 MYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQ 315
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T S+L+ACSS+ + G+ +H +RN N + +A++D
Sbjct: 316 FTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVD 358
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 77 SLAHAHQ--KGLEIHAHVIKYGHLHDIFIQ------NSLLHFYVTVKDIFSAHQIFNSVV 128
S+ H++Q GL + L D +Q N+++ Y V + A ++FN
Sbjct: 114 SIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFS 173
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKA 185
+TW+++ISG + G EA D+F + + KP+ TL S+L CS+LG + G+
Sbjct: 174 SRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEM 233
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IH + ++N E+N+ + ++D
Sbjct: 234 IHGYVVKNGFESNVYVVAGLVD 255
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 38/207 (18%)
Query: 16 KQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+ LN +A K+ + +++ +L+ TQ+ + + ++ + M S + + L
Sbjct: 463 EDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASIL 522
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
AC+ + G ++H+ IK G + + NSL+ Y + A IF S+ DV+
Sbjct: 523 SACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVI 582
Query: 134 TWTTIISGLSKCGFHKEAIDMF-----------------CGI------------------ 158
TWT +I G ++ G ++++ F C I
Sbjct: 583 TWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQ 642
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGK 184
DVKP+A ++L+AC G+ +LG+
Sbjct: 643 MDVKPDATVWKALLAACRVHGNLELGE 669
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++K A+ +YN M ++ N YT+ LKAC KG IH +V+K
Sbjct: 89 NNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVK 148
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ N+ + FY K+I ++ ++F+ ++ D+V+W +++SG G+ EA+ +
Sbjct: 149 CGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVML 208
Query: 155 FC------GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
FC GI NA TLV+VL A + G IH + ++ + LD AV
Sbjct: 209 FCDMLRDDGIGFPDNA-TLVTVLPAFAEKADIHAGYWIHCYIVK----TGMKLDPAV 260
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ HA +I GH D FI L+ Y + ++ A ++F+ + DV W +I G +
Sbjct: 38 QTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYAN 97
Query: 145 CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G EA+ ++ + + PN T VL AC + G+ IH + ++ E ++ +
Sbjct: 98 MGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKCGLEFDLFV 157
Query: 202 DNAVLDF 208
NA + F
Sbjct: 158 GNAFVAF 164
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH +++K G D + L+ Y I A +F+ + +V+ W+ II
Sbjct: 242 GYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGM 301
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
GF +EA+ MF + + + +S+LSACS G + G
Sbjct: 302 HGFAQEALSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEEG 343
>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL+ L + + +A+ L ML +H+TF ALKAC IH +IK
Sbjct: 182 NALLRGLVERAQYGDALGLLPSMLRGAMLPDHFTFGSALKACGAVSVLANVELIHTCIIK 241
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE-AID 153
G+ + + S++ Y + + SA I++S+ PD+V+ T +ISG S H E A++
Sbjct: 242 LGYWGEKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSEDAME 301
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+FC I ++ + L S+L C+++ S + G IHA+ + ++ LDNAV+D
Sbjct: 302 LFCKIHRKGLRIDGVLLSSLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNAVVDM 359
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+Y+ Q+ +C ++G +H +I D+ + L+ FY D+ +A ++F+
Sbjct: 16 YYSLLQSCMSC-----FRRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFD 70
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKL 182
+ VV+WT ++SG S+ G +EA+D+F V+PN T SV SAC+ G +
Sbjct: 71 GMPHRSVVSWTAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRS 130
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
G+ +HA + ++ + +A++D
Sbjct: 131 GEQVHACVAKGRFVGDVFVQSALMDM 156
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IHA++ K + D+ + N+++ Y + A + F+ + + +VV+WT++I+ K
Sbjct: 334 GTQIHAYMCKRQPMTDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSLITACGK 393
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
GF ++A+ +F + VKPN T +S+LSAC G
Sbjct: 394 NGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSACGHSG 430
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+++ + A+ L+ ML N +T+ AC+ A + G ++HA V K + D+
Sbjct: 88 SRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDV 147
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+Q++L+ ++ + A Q+F + DVV W ++ GL + + +A+ + +
Sbjct: 148 FVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSMLRG 207
Query: 159 DVKPNANTLVSVLSACSSL 177
+ P+ T S L AC ++
Sbjct: 208 AMLPDHFTFGSALKACGAV 226
>gi|20160775|dbj|BAB89716.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125573261|gb|EAZ14776.1| hypothetical protein OsJ_04704 [Oryza sativa Japonica Group]
Length = 916
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT++ +++ S + A ++ +L+ S T + +C G +H+ ++
Sbjct: 438 NTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFIL 497
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAI 152
KYG L + NSL+H Y+ D +A + S+ D+++W T I G + G + +A+
Sbjct: 498 KYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPISDIISWNTAIVGCVQNGLYGDAL 557
Query: 153 DMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ F + + P++ TLVSVLS C +L + LGK+IH +L+ L E N+ + NA+L
Sbjct: 558 EAFQFMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALL 615
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L C G IH +K ++ ++N+LL Y D SA IF+S+
Sbjct: 575 TLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSL 634
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAI 186
V ++ +W +ISG ++ A + + D +PN ++V ++ AC+ LG + GK I
Sbjct: 635 VGRNLCSWNCMISGFAQNNEGLRAFQFYKKMEDFEPNEISIVGIICACTQLGDLRQGKNI 694
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H H +R + N+ + +++D
Sbjct: 695 HGHVVRFGLQTNVFISASLVD 715
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++K L ++ A+ ++ +M + + T + AC +G E+H ++IK
Sbjct: 337 NAMIKGLVENDRVNEAMCMFQEM-RSKNQPDVATLVTIISACGDHGLLPEGKEVHGYIIK 395
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC-GFHKEAI 152
GH+++ + NSLL Y+ D +A +F ++ D+++W T+ISG S+ +EA
Sbjct: 396 KGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAK 455
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
MF G+ + +T+V+V+ +C GK++H+ L+
Sbjct: 456 AMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILK 498
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVIKYGHLHDIF-IQNSLLHFY 111
+ +M+ + + + L ACS L G +H+ VIK G+ + NSL+ FY
Sbjct: 253 FKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITFY 312
Query: 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK--PNANTLVS 169
+ +A ++F S ++VTW +I GL + EA+ MF + K P+ TLV+
Sbjct: 313 YELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKNQPDVATLVT 372
Query: 170 VLSACSSLGSRKLGKAIHAHSLR 192
++SAC G GK +H + ++
Sbjct: 373 IISACGDHGLLPEGKEVHGYIIK 395
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q++ A Y KM + N + + AC+ ++G IH HV++
Sbjct: 643 NCMISGFAQNNEGLRAFQFYKKMEDFEP--NEISIVGIICACTQLGDLRQGKNIHGHVVR 700
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++FI SL+ Y + + ++F S + W ++IS G ++I++
Sbjct: 701 FGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLGLKSIEI 760
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ VK +T +++LSACS G
Sbjct: 761 FWKMNNSGVKATRSTFIALLSACSHSG 787
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 68 TFTQALKACSLAHAHQKG--LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+ +AL AC A + +H +K G + D ++ S++ Y V+D+ SA Q+F+
Sbjct: 63 SIVRALGACRGASREEADGVAALHCAALKSGAVLDPPVRTSVITAYSRVRDVCSALQVFD 122
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMF-CGIDVKP--NANTLVSVLSACSSLGSRKL 182
PD++ W IS L+ + +A+ +F +DV ++ ++V +LS S S +
Sbjct: 123 EAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVIDSTSMVIMLSGASRARSLEH 182
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
G A H +L+ + ++ L N ++D
Sbjct: 183 GIAFHGMALKRCLDTDLSLWNTLMD 207
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N + LT + +A+ L+ M++ + + L S A + + G+
Sbjct: 127 PDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVIDSTSMVIMLSGASRARSLEHGIAF 186
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K D+ + N+L+ Y D +S+ +F + + D +W +++SG G
Sbjct: 187 HGMALKRCLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLA 246
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR-KLGKAIHAHSLR 192
+ + F + + + +L VLSACS L G+++H+ ++
Sbjct: 247 EISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHSSVIK 294
>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ L+Q ++AI L+ +ML + + + L AC+ A+++G ++HAH+IK
Sbjct: 477 SMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKR 536
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D+F N+L++ Y I A F+ + VV+W+ +I GL++ G K A+++F
Sbjct: 537 QFTSDVFAGNALVYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRALELF 596
Query: 156 CGI---DVKPNANTLVSVLSACSSLG 178
+ V PN TL SVLSAC+ G
Sbjct: 597 HRMLDEGVAPNNITLTSVLSACNHAG 622
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ ++A+ ++ +M+ N + F+ + AC+ + + G ++H V++
Sbjct: 171 NGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVR 230
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D+F N+L+ Y + DI A +F + DVV+W +I+G G A+++
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALEL 290
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ V PN TL SVL AC+ G+ LG+ IH ++
Sbjct: 291 LLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIK 331
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T LK+ + A ++HA K G L D + N L+ Y + A ++F
Sbjct: 405 NRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVF 464
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
D+++ T++++ LS+C ++AI +F + ++P++ L S+L+AC+SL + +
Sbjct: 465 EESCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYE 524
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GK +HAH ++ +++ NA++
Sbjct: 525 QGKQVHAHLIKRQFTSDVFAGNALV 549
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KIP ++ N L+ A+ L +M N +T + LKAC+ A A
Sbjct: 262 KIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNL 321
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH +IK D F+ L+ Y + A ++F+ + D++ W +ISG S
Sbjct: 322 GRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSH 381
Query: 145 CGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G H E + +F G+D+ N TL +VL + +SL + K +HA
Sbjct: 382 DGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHA 430
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 27 KIPQP-HI-LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P H+ ++L+ + + P++A+ + M N Y LK A +
Sbjct: 62 EIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCNEYALPIVLKC---APDVRF 118
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP----DVVTWTTIIS 140
G ++HA + + D+F+ N+L+ Y + A +IF+ P + V+W +IS
Sbjct: 119 GAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDE---PGGERNAVSWNGMIS 175
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
K ++A+ +F + +PN V++AC+ + G+ +H +R +
Sbjct: 176 AYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDK 235
Query: 198 NIILDNAVLD 207
++ NA++D
Sbjct: 236 DVFTANALVD 245
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T AL + + G +H+H++K G L N LL FY + +A +F+ +
Sbjct: 6 TIGSALARFGASRSLLAGAHLHSHLLKSGLLASY--SNHLLSFYSRCRLPSAARAVFDEI 63
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
P V+W+++++ S G ++A+ F G V N L VL + + G
Sbjct: 64 PDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCNEYALPIVLKCAPDV---RFGA 120
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
+HA ++ ++ + NA++
Sbjct: 121 QVHALAVATRLIQDVFVTNALV 142
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ + A+ L+ +M + TF AL AC+ A G +HA++ +
Sbjct: 224 NTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGR 283
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH D + N+LL Y + A ++F+ + DV T+T++I GL+ G ++A+ +
Sbjct: 284 MGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSL 343
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F G+ V PN TL+ VL+AC G
Sbjct: 344 FAGMQRAGVTPNEVTLLGVLTACCHAG 370
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLS 143
G E H V + D+ N+L+ Y D +AH+ F + V +VV+W T++S +
Sbjct: 172 GREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFA 231
Query: 144 KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G +EA+ +F + V+P+ T V+ L AC+ LG+ G+ +HA+ R + + +
Sbjct: 232 RAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGV 291
Query: 201 LDNAVLDF 208
+ NA+LD
Sbjct: 292 VGNALLDM 299
>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 5/167 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ +++ +++ Q+ P+ A Y KML + + +T L C+ +K
Sbjct: 234 KLPERNLVTWTSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMGDLEK 293
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H H++K G D + ++L+ Y AHQ+ + DVV++T +I G +
Sbjct: 294 GKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMDERDVVSYTALIVGHVR 353
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
G +EA+ F + V PN T V VL AC+ LGS G+ IHA
Sbjct: 354 QGRFQEALQTFSSMQRDGVLPNTVTFVGVLKACTGLGSLVEGRRIHA 400
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A +Y +ML + TFT L C+ + +KG ++H +IK G D + N+L
Sbjct: 58 EEAYRVYEQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTL 117
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y +I H +F + DVVTW II+G ++ G+ EA ++F + +KP+
Sbjct: 118 IDMYAKCGNIRQGHTMFTEMKDRDVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDK 177
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T V VL+ CSSL + G+ +H++ + E ++ + A+L+
Sbjct: 178 VTYVCVLNVCSSL---EQGRILHSYIIEAGLELDLWVGTALLNM 218
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A L+ M + T+ L CS + ++G +H+++I+ G D+++ +LL
Sbjct: 160 EAFELFEAMREAGLKPDKVTYVCVLNVCS---SLEQGRILHSYIIEAGLELDLWVGTALL 216
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPN 163
+ Y + + A QIF + ++VTWT++I+ ++ G ++A + GI
Sbjct: 217 NMYSNCRSLEDALQIFEKLPERNLVTWTSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKF 276
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
A T +VL C+++G + GK +H H +++ + ILD+ ++D
Sbjct: 277 AYT--TVLHVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLIDM 319
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + F+ N+LL+ Y+ I A Q+F+++ D+ TWT +++G ++ G +EA ++
Sbjct: 5 GFVPSTFVLNALLNMYMKCGSITDARQVFDNMRERDMFTWTMMLTGYARLGHLEEAYRVY 64
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + + T ++LS C+SL S + GK +H ++ ++ IL N ++D
Sbjct: 65 EQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDM 120
>gi|255545044|ref|XP_002513583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547491|gb|EEF48986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 4/173 (2%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P N++L Q+ + A+ LY M TF+ +ACS + Q+G +HA
Sbjct: 395 PVTWNSMLSGYVQNEQHEEALKLYVTMKRSSVDCTRSTFSVLFRACSYIGSLQQGKMLHA 454
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
++IK ++++ SL+ Y IF A + F+S+ P+V WT +I+G + GF E
Sbjct: 455 NLIKTPFASNVYVGTSLVDMYSKCGSIFDAKKSFSSISAPNVAAWTALINGYAHHGFGSE 514
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLG-SRKLGKAIHAHSLRNLNENNI 199
AI +F + V PN T V +L+AC G + + I + +NL+E +I
Sbjct: 515 AILLFQHMLEQKVVPNGATFVGILTACDRAGLTAEAVPFIQEVTFQNLSEGSI 567
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
QL+ K+PQ + NT++ + + + L + M + + TF+ L
Sbjct: 50 QLDFARCLFDKMPQRTSVSWNTMISSYLKWGKFKESFSLLSLMHRSNTQLDETTFSTILS 109
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF------NSVV 128
C+ + G +IH V+K G + + LL+FY I A ++F N VV
Sbjct: 110 VCTRTQSFCDGKQIHCLVLKSGCGSFELVGSVLLYFYGNCSQIDDAKRVFDELHDKNEVV 169
Query: 129 FP-------------------------DVVTWTTIISGLSKCGFHKE-AIDMFCGI---- 158
+ +VV+W+ +ISG +K E A+++F +
Sbjct: 170 WSSMVVCYVQRGLLTDAYDLFVKMPKKEVVSWSKLISGYAKSEVRSEKALELFQLMRESG 229
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+V PN TL SV+ C LG+ G +H ++ E + + A++ F
Sbjct: 230 EVLPNEFTLDSVIRVCGKLGALSEGMVVHGILIKTGFEFDQSISGALVQF 279
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 18 LNQIHAQIIKIPQPHILN--TLLKLLTQSST-PQNAIPLYNKMLNCPSSY-NHYTFTQAL 73
L + +K+P+ +++ L+ +S + A+ L+ M N +T +
Sbjct: 183 LTDAYDLFVKMPKKEVVSWSKLISGYAKSEVRSEKALELFQLMRESGEVLPNEFTLDSVI 242
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
+ C A +G+ +H +IK G D I +L+ FY + I A +I++ + +P
Sbjct: 243 RVCGKLGALSEGMVVHGILIKTGFEFDQSISGALVQFYCDCEAIDDAKRIYDGIAYPCSS 302
Query: 134 TWTTIISGLSKCGFHKEAIDMF 155
++I G G K+A +F
Sbjct: 303 ASNSLIEGYVLLGRIKDADLIF 324
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
VTW +++SG + H+EA+ ++ + V +T + ACS +GS + GK +HA+
Sbjct: 396 VTWNSMLSGYVQNEQHEEALKLYVTMKRSSVDCTRSTFSVLFRACSYIGSLQQGKMLHAN 455
Query: 190 SLRNLNENNIILDNAVLD 207
++ +N+ + +++D
Sbjct: 456 LIKTPFASNVYVGTSLVD 473
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 20/183 (10%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ + S P+ A+ LY+ ML +N YTF LKACS A ++ +I
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HAH+IK G +I+ NSLL+ Y DI SA +F+ V D
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT---------------- 184
Query: 149 KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+++F + +K + LVS L AC+ LG GK IHA+ ++ E + IL +
Sbjct: 185 -EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVL 243
Query: 206 LDF 208
+D
Sbjct: 244 IDM 246
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 20/193 (10%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNA------------ 50
LK+ + ++ QIHA IIK+ + + N+LL + ++S ++A
Sbjct: 125 LKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT 184
Query: 51 --IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+ L+++M ++ L+AC+ +G IHA++ K+ D + L+
Sbjct: 185 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 244
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y D+ A ++F + V WT +ISG + G +EA++ F + V+PN
Sbjct: 245 DMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQM 304
Query: 166 TLVSVLSACSSLG 178
T +L+ACS G
Sbjct: 305 TFTGILTACSHAG 317
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVT--VKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IH ++K G + D + LL F + + A +F+ + P+ W T+I G S
Sbjct: 36 QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+EA+ ++ + V NA T +L ACSS+ + + + IHAH ++ + I
Sbjct: 96 SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYT 155
Query: 202 DNAVLD 207
N++L+
Sbjct: 156 TNSLLN 161
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 11/190 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG--- 85
P ++L T+++ ++ P A+ L+ +++ + TF A+KA + A + G
Sbjct: 99 PNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTP 158
Query: 86 ---LEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
IH +K G + + + N+L+HFY K + A ++F+ + DVV+WTT++ G
Sbjct: 159 SGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDG 218
Query: 142 LSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G EA +FC + V +PNA TLV+ +SA +G G +H +
Sbjct: 219 YARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVAR 278
Query: 198 NIILDNAVLD 207
++ LDNA++D
Sbjct: 279 SVNLDNALVD 288
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
+ D++ S+++ Y D+ SA Q+F + +VV+W+ +I+ S+ +EA+ +F
Sbjct: 308 VKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFRE 367
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILDNAVLD 207
G+D P TLVSVLSAC+ LG LG+ I+ + + N + L NA++D
Sbjct: 368 MIAAGVD--PIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALID 421
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ +Q + P+ A+ L+ +M+ T L AC+ G I+ + I
Sbjct: 348 MIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSN 407
Query: 97 HLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ + + N+L+ + D+ A ++F+ + +VV+W T+I + G +EAI +F
Sbjct: 408 KIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLF 467
Query: 156 ---CGIDVKPNANTLVSVLSACSSLG 178
G ++ P+ T + +L++CS G
Sbjct: 468 EQLKGENIVPDQITFLGLLASCSHSG 493
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 11/190 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG--- 85
P ++L T+++ ++ P A+ L+ +++ + TF A+KA + A + G
Sbjct: 99 PNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTP 158
Query: 86 ---LEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
IH +K G + + + N+L+HFY K + A ++F+ + DVV+WTT++ G
Sbjct: 159 SGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDG 218
Query: 142 LSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G EA +FC + V +PNA TLV+ +SA +G G +H +
Sbjct: 219 YARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVAR 278
Query: 198 NIILDNAVLD 207
++ LDNA++D
Sbjct: 279 SVNLDNALVD 288
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-- 155
+ D++ S+++ Y D+ SA Q+F + +VV+W+ +I+ S+ +EA+ +F
Sbjct: 308 VKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFRE 367
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILDNAVLD 207
G+D P TLVSVLSAC+ LG LG+ I+ + + N + L NA++D
Sbjct: 368 MIAAGVD--PIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALID 421
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ +Q + P+ A+ L+ +M+ T L AC+ G I+ + I
Sbjct: 348 MIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSN 407
Query: 97 HLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ + + N+L+ + D+ A ++F+ + +VV+W T+I + G +EAI +F
Sbjct: 408 KIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLF 467
Query: 156 ---CGIDVKPNANTLVSVLSACSSLG 178
G ++ P+ T + +L++CS G
Sbjct: 468 EQLKGENIVPDQITFLGLLASCSHSG 493
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++K+ + A+ L+ +M + N + L C+ + G ++HA +++
Sbjct: 304 NAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVR 363
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+++ + L+ YV D+ A IFN +F DVV W ++I+G S+ G +EA+++
Sbjct: 364 SEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNV 423
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F C V+P+ T + VLSACS G K G I
Sbjct: 424 FHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEI 458
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLS 172
++ A +F + D TW +I + G EA+ +F + V N +++SVLS
Sbjct: 284 EMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLS 343
Query: 173 ACSSLGSRKLGKAIHAHSLRN 193
C+SL S G+ +HA +R+
Sbjct: 344 VCASLASLDHGRQVHARLVRS 364
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK--GLEIHA 90
+ N++++ S +P AI Y MLN N+YTF +KAC+ + K G +HA
Sbjct: 79 MYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHA 138
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG--------- 141
HV+ +G D F+ ++L+ FY D+ +A +F+ + DVV WT +I G
Sbjct: 139 HVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEH 198
Query: 142 ----------------------LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 176
S+ G KE + +F + PN + LVSVL+AC+
Sbjct: 199 ARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAH 258
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
LG+ G +H+++ + ++N IL A++D
Sbjct: 259 LGALAQGLWVHSYAKQCNFDSNPILATALVDM 290
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 22 HAQII--KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
HA+I+ +P+ + ++ ++ ++ + + L+ +M + N L AC+
Sbjct: 198 HARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACA 257
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
A +GL +H++ + + + +L+ Y + SA F + D W
Sbjct: 258 HLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNA 317
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
+ISG++ G +++++F + +P T V+VL+AC+
Sbjct: 318 MISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACT 358
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 92/179 (51%), Gaps = 3/179 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++L + T P A+ Y +L+ ++ + FT KAC+ A + G+ +HAH
Sbjct: 72 LFSSLARAATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGMTVHAHS 131
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I G D F+ +L+ Y + A ++F+++ +VV W +ISG + G ++ I
Sbjct: 132 ILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGI 191
Query: 153 DMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+++ + V P++ T V+ LSAC+ G+ LG+ + + + ++ L +A+++
Sbjct: 192 EVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNM 250
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + I +Y +M + + TF L AC+ A A G E+ ++
Sbjct: 175 NAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVS 234
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+F+ ++L++ Y + A Q F+ + +VVTWT++I+G G EAI +
Sbjct: 235 ERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKL 294
Query: 155 FCGIDVK---PNANTLVSVLSACSSLG 178
+ + K PN T V+VLSAC+ G
Sbjct: 295 YHLMRCKGPPPNDVTFVAVLSACAHAG 321
>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
Length = 717
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQ 71
F+ L+ I Q +I+N ++ +Q+ P AI L+ +ML P ++ +
Sbjct: 231 FEDLDDIRRQ-------NIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLS 283
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L +L G ++H++ +K G + D+ + +SL Y + ++ +F + F D
Sbjct: 284 VLDCLNL------GKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKD 337
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
W ++ISG ++ G+ +EAI +F + P+ +TL +VL+ CSSL S K IH
Sbjct: 338 NACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHG 397
Query: 189 HSLRNLNENNIILDNAVLD 207
++LR + + L +A+++
Sbjct: 398 YTLRAGIDRGMPLGSALVN 416
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 27 KIPQ--PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ P ++L+ +Q Q+ L+ M+ S + Y + LKA L+ +
Sbjct: 433 RLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESEL 492
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++HA++ K G + + +SLL Y I + F+ + PD++ WT +I+ ++
Sbjct: 493 GAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQ 552
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G EA+ ++C + KP+ T V VLSACS G
Sbjct: 553 HGKANEALQVYCLMKEKGFKPDKVTFVGVLSACSHGG 589
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+++M N + YT++ L AC+ + G + A VIK G D+F+ S++ Y
Sbjct: 60 LFHEMCNGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCG-AEDVFVCTSIVDLYA 118
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTL 167
+ A ++F+ + P VV+WT ++SG +K A+++F G+++ N+ T+
Sbjct: 119 KCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEI--NSCTV 176
Query: 168 VSVLSAC 174
SV+SAC
Sbjct: 177 TSVISAC 183
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGID 159
+Q+SL+ + A+++F + +V W TII+G + + D+F C
Sbjct: 9 VQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGF 68
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
KP++ T SVL+AC+SL + GK + A ++
Sbjct: 69 QKPDSYTYSSVLAACASLEELRFGKVVQARVIK 101
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+++ML+ +S + T L CS + + EIH + ++ G + + ++L
Sbjct: 355 REAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSAL 414
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NA 164
++ Y + A ++++ + D V+ +++ISG S+ G ++ +F + + ++
Sbjct: 415 VNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDS 474
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAH 189
+ S+L A +LG +HA+
Sbjct: 475 YAISSILKAAVLSEESELGAQVHAY 499
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I P +++ +L T+S+ +A+ ++ +M + N T T + AC +
Sbjct: 132 RISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCE 191
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF---NSVVFPDVVTWTTIISG 141
++HA V K G D + +L+ DI + ++F + + ++V +++
Sbjct: 192 ASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVTS 249
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S+ +AI +F + + P+ ++ S+LS L LGK +H+++L+ +
Sbjct: 250 FSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCL---NLGKQVHSYTLK----SG 302
Query: 199 IILDNAV 205
+ILD V
Sbjct: 303 LILDLTV 309
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 3/188 (1%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
Q I P N +++ + S P AI +YN M N+ T+ KAC+
Sbjct: 35 QQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVS 94
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IHA V+K G +++ N+L++ Y + + A ++F+ + D+V+W +++ G
Sbjct: 95 CGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYG 154
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+C +E + +F + VK +A T+V V+ AC+SLG + A+ + N E ++
Sbjct: 155 QCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVY 214
Query: 201 LDNAVLDF 208
L N ++D
Sbjct: 215 LGNTLIDM 222
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ A+ L+ +M+ + T L AC+ + G H ++ KY DI
Sbjct: 286 SQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADI 345
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
++ N+L+ Y + A ++F + D V+WT+IISGL+ GF A+D F +
Sbjct: 346 YVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLRE 405
Query: 159 DVKPNANTLVSVLSACSSLG 178
V+P+ V +L AC+ G
Sbjct: 406 VVQPSHGAFVGILLACAHAG 425
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
N+++ Y ++ +A ++F+++ DV++WT +I+ S+ G EA+ +F + VK
Sbjct: 248 NAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVK 307
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
P+ T+ SVLSAC+ GS +G+A H + + + +I + NA++D
Sbjct: 308 PDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDM 354
>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
Length = 1849
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH---AHQKGLEIHAH 91
N ++ +++ + A L++ ML P N+ T L C+ ++ G E+H H
Sbjct: 1144 NAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCH 1203
Query: 92 VIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
V++ L D+ + NSL+ FY+ + + A +F ++ D+V+W II+G + G +
Sbjct: 1204 VLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLK 1263
Query: 151 AIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNIILDNA 204
A+++F +KP++ TLVSVL AC+ + + ++ K IH + +R+ L E+ + NA
Sbjct: 1264 ALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSV-GNA 1322
Query: 205 VLDF 208
+L F
Sbjct: 1323 LLSF 1326
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQI 123
N T L C+ G +H++VIK G N+L+ Y + S A+
Sbjct: 1073 NSVTIAIVLPVCARLR-EDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 1131
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL--- 177
FN + F DVV+W +I+G S+ F +EA +F + ++PN T+ S+L C+SL
Sbjct: 1132 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 1191
Query: 178 GSRKLGKAIHAHSLRNLN-ENNIILDNAVLDF 208
+ GK +H H LR + ++ + N+++ F
Sbjct: 1192 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSF 1223
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 50 AIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
A+ L+ + + C Y N LK+C A + G +H + +K GH+ + L
Sbjct: 953 ALSLFLERVRCSVGYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQSLCKGL 1012
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK-EAIDMFCGI----DVKP 162
L+ Y + +++F + D V W ++SGL+ H+ E + +F + + KP
Sbjct: 1013 LNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKP 1072
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
N+ T+ VL C+ L GK++H++ +++ E++ + NA++
Sbjct: 1073 NSVTIAIVLPVCARL-REDAGKSVHSYVIKSGLESHTLAGNALI 1115
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++++ ++ P A+ L++++ + T L AC+ + + H +VI+
Sbjct: 1488 NLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR 1547
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D+ + + + Y +F A+++F S D+V +T ++ G + G +EA+ +
Sbjct: 1548 -ACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRI 1606
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
F + VKP+ + +VL ACS G
Sbjct: 1607 FSYMLELGVKPDHVIITAVLFACSHAG 1633
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L AC+ H Q IH ++I++ G D + N+LL FY +A Q F
Sbjct: 1283 TLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLM 1342
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ D+++W I+ ++ G +++ + ++P++ T+++++ +++ K
Sbjct: 1343 ISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKV 1402
Query: 184 KAIHAHSLR 192
K H++S+R
Sbjct: 1403 KETHSYSIR 1411
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVK 161
NS++ YVT A+ IFN++ D+ TW ++ ++ F +A+ +F G +K
Sbjct: 1457 NSMISGYVTSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMK 1516
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ T++S+L AC+ + S + + H + +R N++ L+ A +D
Sbjct: 1517 PDIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFID 1561
>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 723
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 1/174 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L + A+ ++ M + T L+ C IH +I+
Sbjct: 305 NSILAGFVYNQRYDEALEMFRLMKKEALEADEVTLVSLLQVCKFFEHPLPCKSIHGVIIR 364
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + +SL+ Y + + A +F+S+ + DVV+ +T+ISGL +CG EAI +
Sbjct: 365 RGYESNEVALSSLMDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAISI 424
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILDNAVLD 207
FC + KPNA T++S+LSACS + K H ++ R L N+I +D +++D
Sbjct: 425 FCQMRDKPNAITVISLLSACSVSAVLRTSKWAHGIAIRRGLAINDISVDTSIVD 478
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+ +++ QS P + L+ +M+ + + T T LKAC++ G +H I
Sbjct: 202 SVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKACAVLDDIDVGRSVHGFSI 261
Query: 94 KYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G L D+F++NSL+ Y D SA ++F+ ++V+W +I++G + EA+
Sbjct: 262 RRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTCRNIVSWNSILAGFVYNQRYDEAL 321
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+MF + ++ + TLVS+L C K+IH +R E+N + ++++D
Sbjct: 322 EMFRLMKKEALEADEVTLVSLLQVCKFFEHPLPCKSIHGVIIRRGYESNEVALSSLMD 379
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH +VI+ G +QNS+L Y D SA ++F+ + DV++W+ +I +
Sbjct: 152 GEKIHGYVIRSGFWRISSVQNSILCLYSEF-DSLSARKLFDEMSERDVISWSVVIRSYVQ 210
Query: 145 CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNI 199
+++F + +P+ T+ SVL AC+ L +G+++H S+ R + ++
Sbjct: 211 SQEPVLGLELFKEMVREAKTEPDCVTVTSVLKACAVLDDIDVGRSVHGFSIRRGFDLVDV 270
Query: 200 ILDNAVLD 207
+ N+++D
Sbjct: 271 FVRNSLID 278
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ L + AI ++ +M + P N T L ACS++ + H I+
Sbjct: 406 STMISGLGRCGRSDEAISIFCQMRDKP---NAITVISLLSACSVSAVLRTSKWAHGIAIR 462
Query: 95 YG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G ++DI + S++ Y I A + F+ + +V+WT IIS + G +A+
Sbjct: 463 RGLAINDISVDTSIVDAYAKCGAIDIARRTFDQITEKSIVSWTVIISAYAINGLPDKALA 522
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
F + PNA T ++ LSAC+ G K G I
Sbjct: 523 SFDEMKRDSYTPNAVTYLAALSACNHGGLVKKGLMI 558
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ F KAC+ +G E + + + NS+ FY+ D+ S + F+
Sbjct: 46 FVFPIVFKACAKLSWLLQGFESY-----------VSVGNSIADFYMKCGDLCSGLRAFDC 94
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLG 183
+ D V+W I+ GL GF +E + F + V +PN +TLV V+ AC SL G
Sbjct: 95 MNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRVWGFEPNVSTLVLVIHACRSLWFD--G 152
Query: 184 KAIHAHSLRN 193
+ IH + +R+
Sbjct: 153 EKIHGYVIRS 162
>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
Length = 706
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 105/198 (53%), Gaps = 14/198 (7%)
Query: 21 IHAQIIKIPQPH---ILNTLLKLLTQSSTPQNAIPL----YNKMLNCPSSYNHYTFTQAL 73
+HA ++ + H ++N+L+ + ++ + AI L Y K N S N L
Sbjct: 259 VHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIWLFRGFYLKSGNVCS--NEDVLAAVL 316
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
C+++ + + G+ +HAH IK G I I+NSL+ Y + I +AH +F + D+V
Sbjct: 317 YGCTISGSVKNGVGVHAHTIKIGAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVKDIV 376
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+W TIIS L+K EA+++F + + P+ T++S+L ACS+ G G+ +H
Sbjct: 377 SWNTIISCLAKSDRVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHG 436
Query: 189 HSLRNLNENNIILDNAVL 206
+ +++ ++ + NA++
Sbjct: 437 YIMKSGFVYDVSICNALI 454
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T L+AC LA + G +H +++ G D F+ SL++ Y D+ SA ++
Sbjct: 135 NEFTAAAVLQACGLARDERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKAGDVVSARRLV 194
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT IISG G +E +++F + V PN T++SV+ ACS +G+ +
Sbjct: 195 LGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQACSLMGASE 254
Query: 182 LGKAIHA 188
L +HA
Sbjct: 255 LFSPVHA 261
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 15 FKQLNQIHA--QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFT 70
F+Q++ H + +K+ NT++ L +S A+ L++ + + T
Sbjct: 357 FEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELFSVLHAAAGGLAPDFVTVL 416
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L+ACS A +G +H +++K G ++D+ I N+L+ Y + I A IF +
Sbjct: 417 SILQACSNAGLLHQGQMLHGYIMKSGFVYDVSICNALITMYAKLGRIDFAEMIFERMDIK 476
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLG 178
D+V+W ++I+ G A+ +F G V PNA T VSV+SACS G
Sbjct: 477 DLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPV-PNAITFVSVISACSHSG 528
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 36/147 (24%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N+ T ++ACSL A + +HA V+ HD + NSL+ Y
Sbjct: 236 NNVTMLSVIQACSLMGASELFSPVHALVVLLELEHDASVVNSLIMMY------------- 282
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK-----PNANTLVSVLSACSSLGS 179
+K GF +EAI +F G +K N + L +VL C+ GS
Sbjct: 283 ------------------AKNGFVEEAIWLFRGFYLKSGNVCSNEDVLAAVLYGCTISGS 324
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
K G +HAH+++ +I ++N+++
Sbjct: 325 VKNGVGVHAHTIKIGAFPSISIENSLM 351
Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 88 IHAHVIKYGHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+HA ++K G L + NSLLH Y+ + A ++ + D T+ ++IS
Sbjct: 48 LHAALLKSGALRSPQAPLAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHC 107
Query: 144 KCGFHKEAIDMFCGI--------DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+ G +A+ F + V+PN T +VL AC +LG+ +H +
Sbjct: 108 RLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGY 161
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ T++ +Q+ A+ L+ KML N YT L +CS + +
Sbjct: 70 RMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ 129
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H+ ++K +F+ +SLL Y ++I A ++F+++ DVV+ T IISG ++
Sbjct: 130 GKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQ 189
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+D+F + ++ N T ++++A S L S GK +HA LR + L
Sbjct: 190 KGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVAL 249
Query: 202 DNAVLDF 208
N+++D
Sbjct: 250 QNSLIDM 256
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+S + + A+ AC A +G ++HA +I + +F+ L+ YV + A
Sbjct: 6 ASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDAR 65
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ + + VV+WTT+ISG S+ H EA+D+F + PN TL +VL++CS
Sbjct: 66 NVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQ 125
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S GK +H+ ++ E+++ + +++LD
Sbjct: 126 SIYQGKQVHSLLVKTNFESHMFVGSSLLDM 155
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q + A+ L+ ++ + NH TFT + A S + G ++HA +++ +
Sbjct: 189 QKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVA 248
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DV 160
+QNSL+ Y + + ++F++++ VV+W ++ G + G E I +F + +V
Sbjct: 249 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEV 308
Query: 161 KPNANTLVSVLSACSSLG 178
KP++ TL++VLS CS G
Sbjct: 309 KPDSVTLLAVLSGCSHGG 326
>gi|224114537|ref|XP_002332354.1| predicted protein [Populus trichocarpa]
gi|222832075|gb|EEE70552.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 14 SFKQLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY 67
S ++LNQ +A +I+ P N L++ T+ P A+ +Y M + S ++Y
Sbjct: 18 SLQELNQTYAHVIRTHVLDVYTAPFHWNNLIRCYTRLGAPNKALQIYVSMSHAGISPDNY 77
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T LKA + + G ++H+ I+ G + + ++ + Y D A+++F
Sbjct: 78 TLPIVLKAACQCFSMELGRQLHSIAIRLGLELNEYCESGFISLYSKSGDFGDAYKVFEEN 137
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKL 182
+ + +W II GL + G KE I+MF CG KP+ T+VSV SAC LG L
Sbjct: 138 LERKLGSWNAIIGGLCQGGRAKEVIEMFIEMRSCGF--KPDDVTMVSVTSACGILGDLHL 195
Query: 183 GKAIHAHSL--RNLNENNIILDNAVLDF 208
+H + ++ + ++++ N+++D
Sbjct: 196 ALQLHKYVFQAKSFVKPDMLMLNSLIDM 223
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L Q + I ++ +M +C + T AC + L++H +V +
Sbjct: 146 NAIIGGLCQGGRAKEVIEMFIEMRSCGFKPDDVTMVSVTSACGILGDLHLALQLHKYVFQ 205
Query: 95 YGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
D+ + NSL+ Y + A+ +F+ + +V +WT++I G
Sbjct: 206 AKSFVKPDMLMLNSLIDMYGKCGRMDLAYMVFSRMDQRNVSSWTSMIVG 254
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 7/191 (3%)
Query: 18 LNQIHAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L H +IP+P I N +L+ QS P+ + LY +M S + YTFT LKA
Sbjct: 62 LKYAHKLFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKA 121
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
CS G IH V+++G L + +++N+L+ F+ D+ A ++F+ V W
Sbjct: 122 CSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAW 181
Query: 136 TTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+++ SG +K G EA+ +F D P+ + + + L R++ A
Sbjct: 182 SSMTSGYAKRGKIDEAMRLF---DEMPDKDQVAWNVMITGCLKCREMDSARELFD--RFT 236
Query: 196 ENNIILDNAVL 206
E +++ NA++
Sbjct: 237 EKDVVTWNAMI 247
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D N ++ + +++ SA ++F+ DVVTW +ISG CG+ KEA+ +F +
Sbjct: 208 DQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMR 267
Query: 160 VK---PNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
P+ T++S+LSAC+ LG + GK +H + L
Sbjct: 268 DAGEHPDVVTILSLLSACAVLGDLETGKRLHIYIL 302
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ P+ A+ ++ +M + + T L AC++ + G +H ++++
Sbjct: 244 NAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILE 303
Query: 95 YGHLHDIF-----IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
+ I N+L+ Y I A ++F + D+ TW T+I GL+ H
Sbjct: 304 TASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLAL--HHA 361
Query: 150 E-AIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
E +++MF + V PN T + V+ ACS G G+
Sbjct: 362 EGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGR 400
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLH-FYVTVKDIFS-AHQIFNSVVFPDVVTWTTIISGLS 143
++IHA ++ G + ++ + L++ ++V AH++F + PDV ++ G +
Sbjct: 29 MQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGSA 88
Query: 144 KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN---LNE 196
+ ++ + ++ ++ V P+ T VL ACS L R G AIH +R+ LNE
Sbjct: 89 QSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNE 147
>gi|222630922|gb|EEE63054.1| hypothetical protein OsJ_17862 [Oryza sativa Japonica Group]
Length = 470
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 21/206 (10%)
Query: 23 AQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
A P +++ L+L +S P + +++ ML N +TF LK+ + A
Sbjct: 64 AATAAFPYNCLIHAHLRLRGSASPPWGPLRIFSAMLARGVRPNRHTFPSLLKSSASFDAA 123
Query: 83 QKGLEIHAHVIKYGHL-------------HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
L HA+ + GHL D+ N++L D++ A +F+ +V
Sbjct: 124 TPTLHAHAYG-RDGHLVRDARKVFDDMASPDLATCNAMLDVLCLSGDMYGARCLFDRMVV 182
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGSRK---L 182
DVV+WTTIISGL++ G H +A++MF ++ TLVSVLSAC++L + + +
Sbjct: 183 RDVVSWTTIISGLTRIGCHWDAVEMFRAFLLQNKGRLSEATLVSVLSACANLDAVEGLAV 242
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
G A+H H +R+ + L A++D
Sbjct: 243 GMAVHGHVVRHEVQFTAFLGTALIDM 268
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNK-MLNCPSSYNHYTFTQALKACSLAHAHQK---GLEIHA 90
T++ LT+ +A+ ++ +L + T L AC+ A + G+ +H
Sbjct: 189 TTIISGLTRIGCHWDAVEMFRAFLLQNKGRLSEATLVSVLSACANLDAVEGLAVGMAVHG 248
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
HV+++ F+ +L+ Y + IF+ V +V TW ++S L+ G E
Sbjct: 249 HVVRHEVQFTAFLGTALIDMYGKYGKLSCCSHIFHLVRDKEVCTWNALLSALANHGKEAE 308
Query: 151 AI---DMFCGIDVKPNANTLVSVLSACSSLGSRKLG 183
A+ +M PN T V+V++AC+ G + G
Sbjct: 309 ALVKFEMMRSEGFLPNHITFVAVMTACARAGLVETG 344
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
LS + L + H +I +P +L N ++ L++S P +AI YN M +H TF
Sbjct: 57 ALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTF 116
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
K+C+ ++G + H +K G +F+ N+L+H YV ++ A ++F+ ++
Sbjct: 117 IFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLE 176
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
DVV+W +II G + K+ +D+F I+V+ ++ T++ +SA L ++G +
Sbjct: 177 RDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYL 236
Query: 187 HAHSLRNLNENNIILD 202
++ ++E+ +++D
Sbjct: 237 ----VKYIDEHGVVVD 248
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 5/157 (3%)
Query: 27 KIPQPHILNTLLKLLTQSSTPQ--NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P +++ ++ S Q A+ L+ +M+ + T AL AC+ +
Sbjct: 305 EMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDA 364
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++ K+ D+F+ NSL+ Y + A Q+FN + D V+WT+IISGL+
Sbjct: 365 GEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAV 424
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
GF + A+++F + + P T V VL AC+ +G
Sbjct: 425 NGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVG 461
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
+I N+++ Y V ++ +A ++FN + DV++WT++I G S H EA+ +F +
Sbjct: 279 NIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMM 338
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VKP+ T+ + LSAC+ LGS G+A+H + ++ ++++ + N+++D
Sbjct: 339 VSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLID 389
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
TF+++ +A S + + E+HA +++ H+ I + H+ ++ + + AH +FN
Sbjct: 13 TFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQ 72
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ P ++ W +I GLSK +AI + + ++ + T + + +C+ + + G
Sbjct: 73 IQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQG 132
Query: 184 KAIHAHSLRNLNENNIILDNAVL 206
+ + HS++ E+ + + NA++
Sbjct: 133 QMVRVHSMKLGFESYLFVSNALI 155
>gi|449497240|ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 429
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L KL + P A+ L+ +M+ + A+ AC G IH +G
Sbjct: 131 LAKLYLREDKPSLALDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNIHHLARVHG 190
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+I + NSLL Y+ I A F+ + D+++WT +I K G EA +F
Sbjct: 191 LEFNILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHMYVKKGGINEAFKLFR 250
Query: 157 GI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++KP+ T+ S+L AC + + K GK IH + ++N + N+I+ NA++D
Sbjct: 251 QMNMDGELKPDPRTISSILPACGRMAAHKHGKEIHGYVVKNAFDENLIVQNALVDM 306
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQ 83
++P I++ L+ + + A L+ +M ++ + T + L AC AH+
Sbjct: 220 QMPSKDIISWTELIHMYVKKGGINEAFKLFRQMNMDGELKPDPRTISSILPACGRMAAHK 279
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G EIH +V+K ++ +QN+L+ YV I SA + F+ + D+V+W+ + G S
Sbjct: 280 HGKEIHGYVVKNAFDENLIVQNALVDMYVKSGCIQSASKTFSMMKEKDMVSWSIMTLGYS 339
Query: 144 KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSS 176
G K + +F ++ ++ + T +VL AC++
Sbjct: 340 LHGQGKLGVSLFREMEKNFKMRRDEITYTAVLHACTT 376
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + L CS A + GL +HA V+K G D+F+ N +L+ Y A Q+F+ +
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++V+W+ +ISG + G + AID++ + + PN SV+SAC+SL + LG+ IH
Sbjct: 65 FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIH 124
Query: 188 AHSLRNLNENNIILDNAVL 206
+ SL+ E+ + N+++
Sbjct: 125 SRSLKFGYESISFVSNSLI 143
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 6/185 (3%)
Query: 29 PQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P+P+ + N L+ ++ + + + M + + F L C+ ++G
Sbjct: 163 PEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGA 222
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
E+H +K FI N ++ Y + I A + F + DV++W T+I+ S C
Sbjct: 223 ELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCD 282
Query: 147 FHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
H + + +F + +V+P+ T S L+AC+ L S GK IHAH +R ++ +
Sbjct: 283 DHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVG 342
Query: 203 NAVLD 207
NA+++
Sbjct: 343 NALVN 347
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TFT AL AC+ + G +IHAH+++ D+ + N+L++ Y I A+ IF
Sbjct: 303 DDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIF 362
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
+ +V ++V+W TII+G G + A+++F ++ ++P++ T + +L+AC+ G
Sbjct: 363 SKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAG 419
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ PQ AI LY++M P N Y F + AC+ A G +IH+ +K+G+ F
Sbjct: 81 QAGEPQMAIDLYSQMFLVP---NEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISF 137
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
+ NSL+ Y+ A +F + P+ V++ +I+G + + ++ F + +
Sbjct: 138 VSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQG 197
Query: 162 --PNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
P+ + VL C++ + K G +H +++ NL+ I
Sbjct: 198 LIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFI 239
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + L CS A + GL +HA V+K G D+F+ N +L+ Y A Q+F+ +
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++V+W+ +ISG + G + AID++ + + PN SV+SAC+SL + LG+ IH
Sbjct: 65 FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIH 124
Query: 188 AHSLRNLNENNIILDNAVL 206
+ SL+ E+ + N+++
Sbjct: 125 SRSLKFGYESISFVSNSLI 143
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 6/185 (3%)
Query: 29 PQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P+P+ + N L+ ++ + + + M + + F L C+ ++G
Sbjct: 163 PEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGA 222
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
E+H +K FI N ++ Y + I A + F + DV++W T+I+ S C
Sbjct: 223 ELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCD 282
Query: 147 FHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
H + + +F + +V+P+ T S L+AC+ L S GK IHAH +R ++ +
Sbjct: 283 DHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVG 342
Query: 203 NAVLD 207
NA+++
Sbjct: 343 NALVN 347
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TFT AL AC+ + G +IHAH+++ D+ + N+L++ Y I A+ IF
Sbjct: 303 DDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIF 362
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
+ +V ++V+W TII+G G + A+++F ++ ++P++ T + +L+AC+ G
Sbjct: 363 SKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAG 419
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ PQ AI LY++M P N Y F + AC+ A G +IH+ +K+G+ F
Sbjct: 81 QAGEPQMAIDLYSQMFLVP---NEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISF 137
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
+ NSL+ Y+ A +F + P+ V++ +I+G + + ++ F + +
Sbjct: 138 VSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQG 197
Query: 162 --PNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
P+ + VL C++ + K G +H +++ NL+ I
Sbjct: 198 LIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFI 239
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 102/188 (54%), Gaps = 6/188 (3%)
Query: 26 IKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ +P+P N+L+ Q + A+ + KM N YTF L AC+ +
Sbjct: 109 VSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLK 168
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +IH ++K L D+++ ++L+ Y + A ++F+ ++ +VV+W ++I+
Sbjct: 169 IGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYE 228
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNI 199
+ G +EA+++F + +P+ TL SV+SAC+SL + K G IHA + R+ +++
Sbjct: 229 QNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDL 288
Query: 200 ILDNAVLD 207
IL NA++D
Sbjct: 289 ILSNALVD 296
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN----CPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
N L+ TQ+ + A+ L+ +ML CP+ HYTF L AC+ Q G + HA
Sbjct: 354 NALIAGYTQNGENEEALRLF-RMLKREAICPT---HYTFGNLLNACANLADLQLGRQAHA 409
Query: 91 HVIK------YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
HV+K YG D+F+ N+L+ Y+ + +IF ++V D V+W +I G ++
Sbjct: 410 HVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQ 469
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
G+ EA+ +F KP+ T++ L ACS G + G+
Sbjct: 470 NGYGMEALGLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGR 512
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 41/214 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q+ + A+ ++ +M+ + T + AC+ A ++GLEIHA V+K
Sbjct: 221 NSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVK 280
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC-------- 145
L D + + N+L+ Y I A +F+ + +VV+ T+++SG +K
Sbjct: 281 RDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARL 340
Query: 146 -----------------------GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
G ++EA+ +F + + P T ++L+AC++L
Sbjct: 341 LFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLAD 400
Query: 180 RKLGKAIHAHSLRN------LNENNIILDNAVLD 207
+LG+ HAH L++ E+++ + NA++D
Sbjct: 401 LQLGRQAHAHVLKHGFRFQYGEESDVFVGNALID 434
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 34/173 (19%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY---------------VT 113
F + L +C + + + IHA +IK +++FIQN L+ Y +
Sbjct: 22 FAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMP 81
Query: 114 VKDIFSAHQIFNSVVF----------------PDVVTWTTIISGLSKCGFHKEAIDMFCG 157
K++FS + I +++V PD +W ++I+G ++ +EA++ F
Sbjct: 82 EKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVK 141
Query: 158 IDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ K N T S LSAC+ L K+G IH L++ ++ + +A++D
Sbjct: 142 MHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALID 194
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 6/206 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY- 64
+K+L+P + F N + K+ N + L + AI + + L + +
Sbjct: 2 IKALRPQVGFATNNVKETVLSKLRAEQSSNEYITSLCKQKLFNEAIKAF-EFLQKKTGFC 60
Query: 65 -NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
T+ + ACS + + G +IH H++K D+ +QN +L+ Y K + A ++
Sbjct: 61 LTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKV 120
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+++ +VV+WT++I+G S+ G A++ + + V P+ T S++ ACSSLG
Sbjct: 121 FDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDI 180
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVL 206
LG+ +HAH L++ +II NA++
Sbjct: 181 GLGRQLHAHVLKSEFGAHIIAQNALI 206
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 38/210 (18%)
Query: 17 QLNQIHAQIIKIP---QPHILNTLLKLLTQSSTPQNAIPLYNKM---------------- 57
Q Q+H I K+ + NTLL + + S ++AI + +M
Sbjct: 385 QGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTAC 444
Query: 58 --------------LNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
L C S + ++ T T L A + + + G ++H + +K G D
Sbjct: 445 MRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDT 504
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGI 158
+ N L+ Y + +AH+IF+S++ PDVV+W+++I G ++ G+ +EA+ +F +
Sbjct: 505 SVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRL 564
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
DVKPN T V VL+ACS +G + G ++
Sbjct: 565 DVKPNHVTFVGVLTACSHVGLVEEGWKLYG 594
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 16 KQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
K L +P+ ++++ +++ +Q+ NA+ Y +ML + +TF +
Sbjct: 112 KSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSII 171
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KACS G ++HAHV+K I QN+L+ Y I A +F+ + D++
Sbjct: 172 KACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLI 231
Query: 134 TWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+W ++I+G S+ G+ EA+ F G+ + PN SV SACSSL + G+ +H
Sbjct: 232 SWGSMIAGFSQLGYELEALCYFKEMLHQGVYL-PNEFIFGSVFSACSSLLQPEYGRQLHG 290
Query: 189 HSLR 192
S++
Sbjct: 291 MSIK 294
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F ACS + G ++H IK+G D+F SL Y + A +F
Sbjct: 265 NEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVF 324
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ PD+V W II+G + G KEAI F + + P+ T+ S+L AC+S
Sbjct: 325 YQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELY 384
Query: 182 LGKAIHAHSLRNLNENNIILD 202
G +H + +N+ + LD
Sbjct: 385 QGMQVHGY----INKMGLDLD 401
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I +P ++ N ++ + AI +++M + + T L AC+ +
Sbjct: 326 QIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQ 385
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLS 143
G+++H ++ K G D+ + N+LL Y ++ A F + D+V+W I L+
Sbjct: 386 GMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAI---LT 442
Query: 144 KCGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
C H +A ++F C +P+ TL +VL A + S ++G +H ++L+
Sbjct: 443 ACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 502
Query: 198 NIILDNAVLDF 208
+ + N ++D
Sbjct: 503 DTSVTNGLIDL 513
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ TQS + L+ M + +T LK C A +G ++HA+ IK
Sbjct: 493 NAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIK 552
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D+++ + +L YV D+ +A F+S+ PD V WTT+ISG + G + A+ +
Sbjct: 553 SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHV 612
Query: 155 FCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + V P+ T+ ++ A S L + + G+ IHA++L+
Sbjct: 613 FSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALK 653
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVI 93
N+++ + QS A+ L+ ++L C +HYT T LKA S L +IH H I
Sbjct: 392 NSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAI 451
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K ++ D F+ +L+ Y + + A +F F D+V W ++SG ++ + ++
Sbjct: 452 KTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLE 510
Query: 154 MFCGIDVKPNAN---TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + + + TL +VL C L + GK +HA+++++ + ++ + + +LD
Sbjct: 511 LFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILD 567
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I +P TL+ ++ + A+ ++++M + +T KA S A ++G
Sbjct: 585 IPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 644
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA+ +K D F+ SL+ Y I A+ +F + ++ W ++ GL++
Sbjct: 645 RQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 704
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
G KEA+ +F ++ +KP+ T + VLSACS G
Sbjct: 705 GEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSG 740
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H +K G + + NSL++ Y ++ I A +FN++ D+++W ++I+G+++
Sbjct: 341 GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQ 400
Query: 145 CGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGS-RKLGKAIHAHSLRNLNENN 198
EA+ +F CG+ KP+ T+ SVL A SSL L K IH H+++ N +
Sbjct: 401 SDLEVEAVCLFMQLLRCGL--KPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVAD 458
Query: 199 IILDNAVLD 207
+ A++D
Sbjct: 459 SFVSTALID 467
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSS-----TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
K+P+ ++ N++L QSS + A L+ + + T + LK C +
Sbjct: 106 KMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHS 165
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
H + K G D F+ +L++ Y+ + +F + + DVV W ++
Sbjct: 166 GYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLML 225
Query: 140 SGLSKCGFHKEAIDM---FCGIDVKPNANTL 167
+ GF +EAID+ F + PN TL
Sbjct: 226 KAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ ++++ L+ Q++ P +AI L+ +M + AL AC+ A +
Sbjct: 173 RMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALEL 232
Query: 85 GLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G I ++ + G L +I + N+L+ Y DI SA Q+F ++ ++TWTT+I+GL+
Sbjct: 233 GEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLA 292
Query: 144 KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G EA++MF ++ VKPN T +++LSACS +G + G+
Sbjct: 293 LHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGR 336
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 40/224 (17%)
Query: 25 IIKIPQPHILNTLLKLLTQSST-PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
I P ++ N ++K L+ S T P+ +I LYN + + Y+F ALKA + + Q
Sbjct: 36 ITHAPDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQ 95
Query: 84 KGLEIHAHVIKYG---HLH--------------------------------DIFIQNSLL 108
G ++H+ I++G LH D+ + N++L
Sbjct: 96 TGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAML 155
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
+ Y D+ +A +F + +V++WT +I+G ++ +AI +F + +V+P+
Sbjct: 156 NGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEI 215
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLDF 208
++ L+AC+ LG+ +LG+ I + R L NI L+NA++D
Sbjct: 216 AMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDM 259
>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Vitis vinifera]
Length = 703
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L ++ P A+ + ++M++ +++ T+ A CS + GL++H + +
Sbjct: 199 NIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFR 258
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +D F+ ++++ Y +I +A ++FN + +VV+WT I++ S+ G +EA++
Sbjct: 259 TGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNF 318
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++V PN T +L++C+ + + GK +H ++ E++II+ NA+++
Sbjct: 319 FPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALIN 374
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF L +C+ A G +H + K G I + N+L++ Y I +AH++F
Sbjct: 330 NEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVF 389
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRK 181
++ D +TW+ +I GLS G +EA+ +F + P+ T V VLSAC+ LGS +
Sbjct: 390 LEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQ 449
Query: 182 LG 183
G
Sbjct: 450 EG 451
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N Y F + +CS + +G + H + +K G + +++N+L+ Y D+ A ++
Sbjct: 128 NEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVW 187
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLGSRK 181
V DV ++ II+GL + G+ EA +D + + T V+ CS L +
Sbjct: 188 YEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLR 247
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
LG +H R E + + +A++D
Sbjct: 248 LGLQVHCRMFRTGAEYDSFVSSAIID 273
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGH-LHDIFIQ-NSLLHFYVTVKDIFSAHQIFNSVV 128
Q LK + + G IHAH+I D +Q NSL++ Y I A +F+ +
Sbjct: 30 QLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMR 89
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMF---CGID-VKPNANTLVSVLSACSSLGSRKLGK 184
+VV+W +++G G E + +F +D ++PN +++S+CS G G
Sbjct: 90 KRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGW 149
Query: 185 AIHAHSLRN 193
H ++L++
Sbjct: 150 QCHGYALKS 158
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ T S + A+ L++ M + TF A KA Q+G +IHA VIK
Sbjct: 469 NAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIK 528
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D+F+ + +L Y+ ++ SA ++FN + PD V WTT+ISG + G ++A+
Sbjct: 529 MRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFT 588
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ + V+P+ T +++ ACS L + + GK IHA+ ++
Sbjct: 589 YHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMK 629
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIK--------------------------------IP 29
F N K+ + +Q QIHA +IK IP
Sbjct: 503 FANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP 562
Query: 30 QPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
P + T++ ++ + A+ Y++M + YTF +KACSL A ++G +
Sbjct: 563 SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQ 622
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHA+++K D F+ SL+ Y +I A+ +F + V W +I GL++ G
Sbjct: 623 IHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGN 682
Query: 148 HKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
+EA++ F + V P+ T + VLSACS G
Sbjct: 683 AEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSG 716
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 14/206 (6%)
Query: 10 KPTLSFKQLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS 63
K T+ ++L Q+ A K+ + N L Q+ A+ + M+
Sbjct: 235 KKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVP 294
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
+ T+ L + + + G +IH V+++G + + NS ++ YV + A ++
Sbjct: 295 CDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRM 354
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL-GS 179
F + D+++W T+ISG ++ G + ++ +F + + P+ T+ SVL ACSSL S
Sbjct: 355 FGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEES 414
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAV 205
+G+ +H +L+ I+LD+ V
Sbjct: 415 YCVGRQVHTCALK----AGIVLDSFV 436
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVI 93
NT++ +S + ++ L+ +L + +T T L+ACS L ++ G ++H +
Sbjct: 367 NTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCAL 426
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + D F+ +L+ Y + A +F++ D+ +W ++ G + ++EA+
Sbjct: 427 KAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALR 486
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + K + T + A L + GK IHA ++ ++ + + +LD
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILD 543
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+T + K C L + + + +K G D+F+ +L++ Y + I A +F+
Sbjct: 123 HTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDR 182
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVL 171
+ DVV W ++ + G E + +F ++P+ ++ ++L
Sbjct: 183 MPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ T++ +Q+ A+ L+ KML N YT L +CS + +
Sbjct: 102 RMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ 161
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H+ ++K +F+ +SLL Y ++I A ++F+++ DVV+ T IISG ++
Sbjct: 162 GKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQ 221
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+D+F + ++ N T ++++A S L S GK +HA LR + L
Sbjct: 222 KGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVAL 281
Query: 202 DNAVLDF 208
N+++D
Sbjct: 282 QNSLIDM 288
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+S + + A+ AC A +G ++HA +I + +F+ L+ YV + A
Sbjct: 38 ASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDAR 97
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ + + VV+WTT+ISG S+ H EA+D+F + PN TL +VL++CS
Sbjct: 98 NVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQ 157
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S GK +H+ ++ E+++ + +++LD
Sbjct: 158 SIYQGKQVHSLLVKTNFESHMFVGSSLLDM 187
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q + A+ L+ ++ + NH TFT + A S + G ++HA +++ +
Sbjct: 220 AQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFV 279
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--D 159
+QNSL+ Y + + ++F++++ VV+W ++ G + G E I +F + +
Sbjct: 280 ALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE 339
Query: 160 VKPNANTLVSVLSACSSLG 178
VKP++ TL++VLS CS G
Sbjct: 340 VKPDSVTLLAVLSGCSHGG 358
>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + ++L + P AI Y +L+ ++ +TFT KAC+ A + G I
Sbjct: 68 PDSFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAI 127
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HAH I G D F+ +L+ Y + A ++F+++ VV W +ISG + G
Sbjct: 128 HAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLA 187
Query: 149 KEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ I ++ + P++ T V+ LSAC+ G+ LG+ + + + ++ L +A+
Sbjct: 188 ERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSAL 247
Query: 206 LDF 208
++
Sbjct: 248 VNM 250
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + I +Y +M + + TF L AC+ A A G E+ V+
Sbjct: 175 NAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVS 234
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+F+ ++L++ Y + A + F+++ +VVTWT++I+G G +EAI +
Sbjct: 235 ERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKL 294
Query: 155 FCGIDVK---PNANTLVSVLSACSSLG 178
F + + PN T V+VLSAC+ G
Sbjct: 295 FHLMRCEGPPPNHVTFVAVLSACAHAG 321
>gi|449440223|ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 629
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L KL + P A+ L+ +M+ + A+ AC G IH +G
Sbjct: 131 LAKLYLREDKPSLALDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNIHHLARVHG 190
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+I + NSLL Y+ I A F+ + D+++WT +I K G EA +F
Sbjct: 191 LEFNILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHMYVKKGGINEAFKLFR 250
Query: 157 GI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ ++KP+ T+ S+L AC + + K GK IH + ++N + N+I+ NA++D
Sbjct: 251 QMNMDGELKPDPRTISSILPACGRMAAHKHGKEIHGYVVKNAFDENLIVQNALVD 305
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T + L AC AH+ G EIH +V+K ++ +QN+L+ YV I SA + F+ +
Sbjct: 264 TISSILPACGRMAAHKHGKEIHGYVVKNAFDENLIVQNALVDMYVKSGCIQSASKTFSMM 323
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSS 176
D+V+W+ + G S G K + +F ++ ++ + T +VL AC++
Sbjct: 324 KEKDMVSWSIMTLGYSLHGQGKLGVSLFREMEKNFKMRRDEITYTAVLHACTT 376
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 9/210 (4%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
+ L+ +S QL +IP P N L++ + AI LY ML +
Sbjct: 39 QELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAP 98
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF LKACS + G IHAH G D+F+ +L+ Y+ A +F
Sbjct: 99 NKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSR 180
+ DVV W +++G + G + AI DM ++PNA+TLVS+L + G+
Sbjct: 159 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218
Query: 181 KLGKAIHAHSLR---NLNENNIILDNAVLD 207
G +IHA+ LR NE +++ A+LD
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLD 248
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
LL Q+ + A ++ KM C + T + ACS A Q G H VI G
Sbjct: 379 LLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRG 438
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ I NSL+ Y I + Q+F+ + DVV+W T+I+G G KEA +F
Sbjct: 439 LALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFL 498
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGK 184
G+ P+ T + +++ACS G GK
Sbjct: 499 GMKNQGFAPDDVTFICLIAACSHSGLVTEGK 529
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 68 TFTQALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ AL+ C SLA H G ++HA + K G D+ NSLL Y I A F+
Sbjct: 309 SVASALRVCASLADLHM-GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDE 367
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ D +++ ++SG + G +EA +F + +++P+ T+VS++ ACS L + + G
Sbjct: 368 IAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHG 427
Query: 184 KAIHA 188
K H
Sbjct: 428 KCSHG 432
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 84 KGLEIHAHVIKY---GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+G IHA+ ++ + + I +LL Y K + A ++F+ + + VTW+ +I
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279
Query: 141 GLSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLGSRKLGKAIHA 188
G C EA ++F + V+ +A ++ S L C+SL +G +HA
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHA 331
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A LY KML S N TF L +C+ A +G IH+H+ + G D+ + N+L+
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALIT 323
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH-KEAIDMFCGI-------DVK 161
Y I A + F+ + DV++W+ +I+G ++ G+ KE++D + V
Sbjct: 324 MYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF 383
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
PN T +S+L ACS G+ + G+ IHA + E++ L A+ +
Sbjct: 384 PNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFN 429
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P A + +M + N TF LKAC+ +K EIH V G D+ + +
Sbjct: 160 PAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATA 219
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
L+ Y +I A +IF + +VV+WT II ++ EA +++ + + PN
Sbjct: 220 LITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPN 279
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNENNIILDNAVL 206
A T VS+L++C++ + G+ IH+H S R L E ++++ NA++
Sbjct: 280 AVTFVSLLNSCNTPEALNRGRRIHSHISERGL-ETDVVVANALI 322
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF LKACS+ A ++G +IHA + K G D +Q ++ + Y I+ A Q+F
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK----------------------- 161
+ + +VV W ++++ KCG A +F + +
Sbjct: 445 SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFE 504
Query: 162 -----------PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
P+ T++S+L AC +L + + GK +HA +++ E++ ++ +++
Sbjct: 505 LLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLI 560
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T+ ++ C+ + G +H + + G DI++ NSL++FY D+ S Q+F
Sbjct: 77 NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ DVVTW+++I+ + +A D F + +++PN T +S+L AC++ +
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLE 196
Query: 182 LGKAIH 187
+ IH
Sbjct: 197 KAREIH 202
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L+AC A ++G +HA +K G D + SL+ Y ++ A +F+ +
Sbjct: 520 TIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKI 579
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D V W +++G + G EA+D+F + V PN T +V+SAC G + G+
Sbjct: 580 SNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGR 639
Query: 185 AI 186
I
Sbjct: 640 EI 641
>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
Length = 781
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ ++LN P +++T + + A L + + +IH+++I G+ + I N++LH
Sbjct: 395 AITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLH 454
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y D+ ++ +IF+ +V DV++W T+I G + G K A++MF + ++PN +T
Sbjct: 455 MYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNEST 514
Query: 167 LVSVLSACSSLG 178
VSVL+ACS G
Sbjct: 515 FVSVLTACSVSG 526
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
++ P + N +++ + P A+ Y ML + + +TF +K C+ +G
Sbjct: 67 VRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEG 126
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
H VIK G HD++ NSL+ FY + + A ++F+ + D+VTW ++ G
Sbjct: 127 RAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSN 186
Query: 146 GFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G A+ +M ++V+ ++ +++ L+AC S GK IH + +R+ E +I +
Sbjct: 187 GLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKV 246
Query: 202 DNAVLD 207
++LD
Sbjct: 247 GTSLLD 252
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC L + +G EIH +VI++G DI + SLL Y ++ A +F ++
Sbjct: 215 ALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRT 274
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
VVTW +I G + EA D F G+ V+ T +++L+AC+ S G+++
Sbjct: 275 VVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVE--VVTAINLLAACAQTESSLYGRSV 332
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H + +R +++L+ A+L+
Sbjct: 333 HGYVVRRQFLPHVVLETALLE 353
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC+ + G +H +V++ L + ++ +LL Y V + S+ +IF +
Sbjct: 312 TAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKI 371
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V+W +I+ + EAI +F + + P+ T+ +V+ A LGS + +
Sbjct: 372 ANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCR 431
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IH++ + N ++ NAVL
Sbjct: 432 QIHSYIIGLGYAENTLIMNAVL 453
>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
Length = 781
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ ++LN P +++T + + A L + + +IH+++I G+ + I N++LH
Sbjct: 395 AITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLH 454
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y D+ ++ +IF+ +V DV++W T+I G + G K A++MF + ++PN +T
Sbjct: 455 MYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNEST 514
Query: 167 LVSVLSACSSLG 178
VSVL+ACS G
Sbjct: 515 FVSVLTACSVSG 526
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
++ P + N +++ + P A+ Y ML + + +TF +K C+ +G
Sbjct: 67 VRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEG 126
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
H VIK G HD++ NSL+ FY + + A ++F+ + D+VTW T++ G
Sbjct: 127 RAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSN 186
Query: 146 GFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G A+ +M ++V+ ++ +++ L+AC S GK IH + +R+ E +I +
Sbjct: 187 GLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKV 246
Query: 202 DNAVLD 207
++LD
Sbjct: 247 GTSLLD 252
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC L + +G EIH +VI++G DI + SLL Y ++ A +F ++
Sbjct: 215 ALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRT 274
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
VVTW +I G + EA D F G+ V+ T +++L+AC+ S G+++
Sbjct: 275 VVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVE--VVTAINLLAACAQTESSLYGRSV 332
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H + +R +++L+ A+L+
Sbjct: 333 HGYVVRRQFLPHVVLETALLE 353
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC+ + G +H +V++ L + ++ +LL Y V + S+ +IF +
Sbjct: 312 TAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKI 371
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V+W +I+ + EAI +F + + P+ T+ +V+ A LGS + +
Sbjct: 372 ANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCR 431
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IH++ + N ++ NAVL
Sbjct: 432 QIHSYIIGLGYAENTLIMNAVL 453
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T+LK + S A+ + +M + Y FT LK C + G EIH ++K
Sbjct: 105 TMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM- 154
G D+F L + Y + + A ++F+ + D+V+W TI++G S+ G + A++M
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224
Query: 155 --FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C ++KP+ T+VSVL A S+L ++GK IH +++R ++ + + A++D
Sbjct: 225 NLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVD 279
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ P+ A+ ++ KML+ + AL AC+ ++G IH ++
Sbjct: 306 NSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + NSL+ Y K++ +A +F + +V+W +I G ++ G EA++
Sbjct: 366 LELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNY 425
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + VKP+ T VSV++A + L K IH +RN + N+ + A++D
Sbjct: 426 FSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVD 481
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 95/196 (48%), Gaps = 5/196 (2%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+Q+++ ++P+ ++ NT++ +Q+ + A+ + N M + T L
Sbjct: 184 RQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVL 243
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
A S + G EIH + ++ G + I +L+ Y + +A +F+ ++ +VV
Sbjct: 244 PAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVV 303
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+W ++I + KEA+ +F + VKP +++ L AC+ LG + G+ IH S
Sbjct: 304 SWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363
Query: 191 LRNLNENNIILDNAVL 206
+ + N+ + N+++
Sbjct: 364 VELELDRNVSVVNSLI 379
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N ++ Q+ P A+ +++M P ++ + + A+ S+ H H K IH
Sbjct: 407 NAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITH-HAKW--IHGV 463
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V++ ++F+ +L+ Y I A IF+ + V TW +I G G K A
Sbjct: 464 VMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAA 523
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLG-KAIH 187
+++F + ++PN T +SV+SACS G + G K H
Sbjct: 524 LELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFH 563
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 36/242 (14%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNA------IP 52
F++ LK+ + IH Q+IK P H+ N+L+ + + + A IP
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253
Query: 53 ------------------------LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
++N+ML + N YTF L++CS G ++
Sbjct: 254 ERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 313
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA ++K + F+ +L+ Y + + A IFN ++ D+ WT I++G ++ G
Sbjct: 314 HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQG 373
Query: 149 KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
++A+ F + VKPN TL S LS CS + + G+ +H+ +++ ++ + +A+
Sbjct: 374 EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASAL 433
Query: 206 LD 207
+D
Sbjct: 434 VD 435
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF LK C+ +G IH VIK G D + NSL++ Y A ++F
Sbjct: 190 NMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF 249
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHK--EAIDMFCGIDVKPNANTLVSVLSACSSLGSRKL 182
+ DVV+WT +I+G G+ + PN T +S+L +CSSL L
Sbjct: 250 GEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
GK +HA ++N + N + A++D
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVD 334
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q + A+ + +M N +T +L CS G ++H+ IK G D+
Sbjct: 368 AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDM 427
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+ ++L+ Y + A +F+ +V D V+W TII G S+ G +A+ F +
Sbjct: 428 FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 487
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
P+ T + VLSACS +G + GK H +SL +
Sbjct: 488 GTVPDEVTFIGVLSACSHMGLIEEGKK-HFNSLSKI 522
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 41 LTQSSTP---QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
L+ +++P Q A+ L+ M + N + F + A + + G IHA V KYG
Sbjct: 62 LSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGF 121
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL---SKCGFHKEAIDM 154
DI I N+ + Y+ + + + Q F +++ ++ + ++SG C +
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+PN T +S+L C+S G GKAIH +++
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKS 220
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
VIK G D + +SL++ YV + + A Q+ + DV W +S + +E
Sbjct: 14 RVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQE 73
Query: 151 AIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
A+ +F + ++ N S++SA +SLG G++IHA + E++I++ NA
Sbjct: 74 AVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNA 130
>gi|357138796|ref|XP_003570973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 472
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L ++S P+ A+ L+ +M + + YTF + ACS + +H I+ G+
Sbjct: 95 LIRASPPRIALRLFGQMHHRDVPADTYTFPFLIHACSGSDP-PLCESLHGQSIRVGYSSH 153
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----C 156
+F Q +L++ Y A ++F+ + DVV WT ++SG G H EA+++F
Sbjct: 154 LFTQTALMNMYFVCGLAAPARRVFDEMQARDVVVWTGMVSGYVDTGMHLEAVEVFQEMRR 213
Query: 157 GIDV-KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G +V PN T+VSV SAC+ LGS + K +H + + +++I+ NA++D
Sbjct: 214 GEEVASPNVATIVSVASACAGLGSLEYAKWLHGYVEKLGFGSDLIVTNALMD 265
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 49 NAIPLYNKMLNCP--SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
A+ ++ +M +S N T AC+ + + +H +V K G D+ + N+
Sbjct: 203 EAVEVFQEMRRGEEVASPNVATIVSVASACAGLGSLEYAKWLHGYVEKLGFGSDLIVTNA 262
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPN 163
L+ Y + SA +FN + D+ +WTTIISGL+ G KE + +F + V P+
Sbjct: 263 LMDMYGKCGGVESARALFNLMHEKDLHSWTTIISGLASHGHVKEGLALFSSMQKMGVLPD 322
Query: 164 ANTLVSVLSACSSLGSRKLGKAI 186
+ T + VLSACS G G I
Sbjct: 323 STTFIVVLSACSHAGLVDEGMCI 345
>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
Length = 785
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 97/188 (51%), Gaps = 9/188 (4%)
Query: 26 IKIPQPHILNTLLKLLTQSST------PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
++ P + NT++ ++ T A+ LY+++ + +TF+ L+AC+LA
Sbjct: 273 VQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLA 332
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G +IH VIKY D FI ++L+ Y + + F S D+VTWT ++
Sbjct: 333 GYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMV 392
Query: 140 SGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
SG + H++A+ +F G +KP+ T+ SV++AC+SL + G+ I + ++ +
Sbjct: 393 SGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFD 452
Query: 197 NNIILDNA 204
++ N+
Sbjct: 453 RFTVMGNS 460
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ L+++ L + +T + + AC+ + G +I K G
Sbjct: 397 QNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTV 456
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGID 159
+ NS +H Y D+ +A + F + DVV+W+ +IS ++ G ++A+ F
Sbjct: 457 MGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAK 516
Query: 160 VKPNANTLVSVLSACSSLG 178
V PN T + VL+ACS G
Sbjct: 517 VVPNEITFLGVLTACSHGG 535
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS--------LAHAHQKGL 86
N+L+ ++ + + ++ M N + +K CS +A A
Sbjct: 179 NSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEA----- 233
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC- 145
+H VIK G D+F+ ++++ Y + A +F SV P+VV + T+I+G +
Sbjct: 234 -VHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTE 292
Query: 146 -----GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
EA+ ++ + ++P T SVL AC+ G + GK IH ++ +
Sbjct: 293 TVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQE 352
Query: 198 NIILDNAVLDF 208
+ + +A++D
Sbjct: 353 DDFIGSALIDL 363
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +++ AL ACS A + G +HA I G +F+ NSL+ Y ++ A ++F
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVF 167
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL--GS 179
+ D V+W +++SG + G +E + +F + + N+ L SV+ CS G+
Sbjct: 168 DVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGT 227
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +A+H ++ ++++ L +A++D
Sbjct: 228 MDIAEAVHGCVIKAGLDSDVFLVSAMID 255
>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
Length = 785
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 97/188 (51%), Gaps = 9/188 (4%)
Query: 26 IKIPQPHILNTLLKLLTQSST------PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
++ P + NT++ ++ T A+ LY+++ + +TF+ L+AC+LA
Sbjct: 273 VQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLA 332
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G +IH VIKY D FI ++L+ Y + + F S D+VTWT ++
Sbjct: 333 GYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMV 392
Query: 140 SGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
SG + H++A+ +F G +KP+ T+ SV++AC+SL + G+ I + ++ +
Sbjct: 393 SGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFD 452
Query: 197 NNIILDNA 204
++ N+
Sbjct: 453 RFTVMGNS 460
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ L+++ L + +T + + AC+ + G +I K G
Sbjct: 397 QNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTV 456
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGID 159
+ NS +H Y D+ +A + F + DVV+W+ +IS ++ G ++A+ F
Sbjct: 457 MGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAK 516
Query: 160 VKPNANTLVSVLSACSSLG 178
V PN T + VL+ACS G
Sbjct: 517 VVPNEITFLGVLTACSHGG 535
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS--------LAHAHQKGL 86
N+L+ ++ + + ++ M N + +K CS +A A
Sbjct: 179 NSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEA----- 233
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC- 145
+H VIK G D+F+ ++++ Y + A +F SV P+VV + T+I+G +
Sbjct: 234 -VHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTE 292
Query: 146 -----GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
EA+ ++ + ++P T SVL AC+ G + GK IH ++ +
Sbjct: 293 TVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQE 352
Query: 198 NIILDNAVLDF 208
+ + +A++D
Sbjct: 353 DDFIGSALIDL 363
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +++ AL ACS A + G +HA I G +F+ NSL+ Y ++ A ++F
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVF 167
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL--GS 179
+ D V+W +++SG + G +E + +F + + N+ L SV+ CS G+
Sbjct: 168 DVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGT 227
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +A+H ++ ++++ L +A++D
Sbjct: 228 MDIAEAVHGCVIKAGLDSDVFLVSAMID 255
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P NT+++ T S+P A+ ++ +M + +TF LKACSL A
Sbjct: 88 RIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSLLPALSL 147
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFY---------------VTVKDIFS---------- 119
+H+ K+G D+F+ N+L+H Y ++KD+ S
Sbjct: 148 AQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGFIK 207
Query: 120 ------AHQIFNSVVFPDVVTWTTIISGLSKCG-FHKEAIDMFCGI---DVKPNANTLVS 169
A ++F+ + D V+W T+++G ++ G +AI +F + V+P+ LVS
Sbjct: 208 VGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVS 267
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
LSAC+ LG + GK+IH + +N N L ++D
Sbjct: 268 ALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDL 306
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSST-PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
TLL QS +AI L+N+ML ++ AL AC+ ++G IH ++
Sbjct: 230 GTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIK 289
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ + F+ L+ Y I +A +IF S ++ TW ++ GL G ++
Sbjct: 290 QNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLH 349
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ + + +L C G
Sbjct: 350 YFSRMIEAGIKPDGVSFLGILVGCGHAG 377
>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Brachypodium distachyon]
Length = 622
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P+ NTL++ P A+ LY ML + YTF LKAC+ A +G ++
Sbjct: 106 PEAFDYNTLMRGHVAHDDPAAALRLYAAMLEQGVEPDRYTFPFVLKACARLAASGQGRQL 165
Query: 89 HAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL---SK 144
H HV K G HD + NSL+ FY + A + F + + T + + L ++
Sbjct: 166 HGHVAKLGFSQHDEHVGNSLISFYGRCGEPELARRAFEQMEAEESTTAASWSALLAAYTR 225
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G + +D F + +P +++VS LSAC+ LG+ +G++IH LRN N +
Sbjct: 226 AGLWADCLDSFGAMARAGGRPEESSMVSALSACAHLGAYDVGRSIHCALLRNTVALNTFM 285
Query: 202 DNAVLDF 208
+ +++D
Sbjct: 286 ETSLVDM 292
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
+P L+ + Q+ A+ + + LL T++ + + + M +
Sbjct: 194 EPELARRAFEQMEAE--ESTTAASWSALLAAYTRAGLWADCLDSFGAMARAGGRPEESSM 251
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
AL AC+ A+ G IH +++ + F++ SL+ Y I A +F+++
Sbjct: 252 VSALSACAHLGAYDVGRSIHCALLRNTVALNTFMETSLVDMYAKCGCIDKASAVFDAMDG 311
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLG 178
+ T++ ++SGL+ G +A+ +F + KP+ V +L+ACS G
Sbjct: 312 KNEWTYSAMVSGLALHGDGLKALQVFDAMAREGHKPDEAVYVGILNACSRSG 363
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ T++ +Q+ A+ L+ KML N YT L +CS + +
Sbjct: 70 RMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQ 129
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H+ ++K +F+ +SLL Y ++I A ++F+++ DVV+ T IISG ++
Sbjct: 130 GKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQ 189
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA+D+F + ++ N T ++++A S L S GK +HA LR + L
Sbjct: 190 KGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVAL 249
Query: 202 DNAVLDF 208
N+++D
Sbjct: 250 QNSLIDM 256
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
+S + + A+ AC A +G ++HA +I + +F+ L+ YV + A
Sbjct: 6 ASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDAR 65
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ + + VV+WTT+ISG S+ H EA+D+F + PN TL +VL++CS
Sbjct: 66 NVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQ 125
Query: 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
S GK +H+ ++ E+++ + +++LD
Sbjct: 126 SIYQGKQVHSLLVKTNFESHMFVGSSLLDM 155
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q + A+ L+ ++ + NH TFT + A S + G ++HA +++ +
Sbjct: 188 AQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFV 247
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--D 159
+QNSL+ Y + + ++F++++ VV+W ++ G + G E I +F + +
Sbjct: 248 ALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE 307
Query: 160 VKPNANTLVSVLSACSSLG 178
VKP++ TL++VLS CS G
Sbjct: 308 VKPDSVTLLAVLSGCSHGG 326
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 9/210 (4%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
+ L+ +S QL +IP P N L++ + AI LY ML +
Sbjct: 39 QELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAP 98
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YTF LKACS + G IHAH G D+F+ +L+ Y+ A +F
Sbjct: 99 NKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSR 180
+ DVV W +++G + G + AI DM ++PNA+TLVS+L + G+
Sbjct: 159 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218
Query: 181 KLGKAIHAHSLR---NLNENNIILDNAVLD 207
G +IHA+ LR NE +++ A+LD
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLD 248
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
LL Q+ + A ++ KM C + T + ACS A Q G H VI G
Sbjct: 379 LLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRG 438
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ I NSL+ Y I + Q+F+ + DVV+W T+I+G G KEA +F
Sbjct: 439 LALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFL 498
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGK 184
G+ P+ T + +++ACS G GK
Sbjct: 499 GMKNQGFAPDDVTFICLIAACSHSGLVTEGK 529
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 68 TFTQALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ AL+ C SLA H G ++HA + K G D+ NSLL Y I A F+
Sbjct: 309 SVASALRVCASLADLHM-GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDE 367
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ D +++ ++SG + G +EA +F + +++P+ T+VS++ ACS L + + G
Sbjct: 368 IAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHG 427
Query: 184 KAIHA 188
K H
Sbjct: 428 KCSHG 432
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 84 KGLEIHAHVIKY---GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+G IHA+ ++ + + I +LL Y K + A ++F+ + + VTW+ +I
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279
Query: 141 GLSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLGSRKLGKAIHA 188
G C EA ++F + V+ +A ++ S L C+SL +G +HA
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHA 331
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ Y ML+ S + T L +C A GL +H+H +K G D+ + N+L+
Sbjct: 241 AVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLIC 300
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANT 166
Y D+ SA +FN + V+WT +IS ++ G+ EA+ +F ++ KP+ T
Sbjct: 301 MYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVT 360
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+++++S C G+ +LGK I +S+ N ++N+++ NA++D
Sbjct: 361 VLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALID 401
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVI 93
N+ + L QNA+ L+ +M + N+ TF LKAC+ L+H + IHAHV+
Sbjct: 22 NSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQI-IHAHVL 80
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
K +IF+Q + + YV + AH +F + D+ +W ++ G ++ GF
Sbjct: 81 KSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGF 134
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+N M + T + C A + G I + I G ++ + N+L+
Sbjct: 342 AMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALID 401
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANT 166
Y A ++F ++ VV+WTT+I+ + G K+A+++F + +KPN T
Sbjct: 402 MYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHIT 461
Query: 167 LVSVLSACSSLG 178
++VL AC+ G
Sbjct: 462 FLAVLQACAHGG 473
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKA 185
F + TW + L G + A+ +F + + PN +T VL AC+ L + +
Sbjct: 15 FSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQI 74
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
IHAH L++ ++NI + A +D
Sbjct: 75 IHAHVLKSCFQSNIFVQTATVD 96
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ+ +A+ L+ KM+N + Y F+ LKAC+ G +IH H++K G ++
Sbjct: 188 TQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEV 247
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ L+ FYV ++ SA + F + P+ V+W+ +I+G + G +EA+ F +
Sbjct: 248 SVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTR 307
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
V N+ T S+ ACS+L G HA ++++
Sbjct: 308 SVDINSFTYTSIFQACSALADFNSGAQAHADAIKS 342
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +T+T +ACS G + HA IK + +++++ Y + A ++F
Sbjct: 312 NSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVF 371
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLG 178
S+ PD V WT II+G + G EA+ +F CG V+PNA T ++VL+ACS G
Sbjct: 372 ESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCG--VRPNAVTFIAVLTACSHSG 428
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---I 158
F++NS+L Y + A ++F+ + ++V+W TIIS ++ G + MF +
Sbjct: 46 FLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLEL 105
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+ KPN +T + L + + ++GK IH+H++R+ +N ++ A+
Sbjct: 106 ETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAI 152
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ +++ ML + N T+ L++ + G +IH+H I+
Sbjct: 80 NTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIR 139
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + ++ + YV + A +F + + V WT I+ G ++ +A+ +
Sbjct: 140 SGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALAL 199
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + V+ + VL AC+ L G+ IH H ++ E+ + + ++DF
Sbjct: 200 FAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDF 256
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N LL Q + A+ LY+ M + + +TFT L C+ +G +IHAH+I
Sbjct: 447 NALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI 506
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ +I ++ L+H Y + A +IFN + + +W ++I G + G +EA+
Sbjct: 507 RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALR 566
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + +KP+ +L S+LS+C SL + G+ +H +RN E IL ++D
Sbjct: 567 LFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVD 623
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A ++++ML +++TF AL+ C + G ++H+ +I G D F+ N+L
Sbjct: 258 EEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNAL 317
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y D S ++F+ + + VTW +IIS ++ G +A+ +F + K N
Sbjct: 318 IDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNR 377
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
L S+L A + L G+ +H H +RNL ++IIL +A++D
Sbjct: 378 FNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVD 420
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 89/176 (50%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q +A+ L+ +M N + L A + KG E+H H+++
Sbjct: 346 NSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR 405
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DI + ++L+ Y + AHQ+F S++ + V++ +++G + G +EA+++
Sbjct: 406 NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALEL 465
Query: 155 FCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + ++P+ T ++L+ C++ + G+ IHAH +R NII++ ++
Sbjct: 466 YHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELV 521
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 12/181 (6%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP 61
FVN ++ F Q+ Q + + N++L + + + +ML
Sbjct: 656 FVNSGRANDAKNLFDQMEQRNTAL--------WNSILAGYANKGLKKESFNHFLEMLESD 707
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSA 120
Y+ T + CS A + G ++H+ +IK G ++ + ++ +L+ Y I A
Sbjct: 708 IEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKA 767
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 177
+F+++ ++V+W +ISG SK G KEA+ ++ + K PN T +++LSACS
Sbjct: 768 RTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHT 827
Query: 178 G 178
G
Sbjct: 828 G 828
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL-EIHAHVI 93
NT++ + + LY +M + + +TF +KAC +A G+ ++ + V+
Sbjct: 144 NTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC-IAMEDMGGVRQLQSSVV 202
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA-- 151
K G ++F+ +L+ Y + A + + VVTW +I+G K +EA
Sbjct: 203 KAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWG 262
Query: 152 -IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D I V P+ T S L C +L SR GK +H+ + + + + NA++D
Sbjct: 263 IFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALID 319
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 93/208 (44%), Gaps = 35/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ Q+ Q A+ L+ +M + ++ + L +C QKG E+H +++
Sbjct: 549 NSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR 608
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT-------------------- 134
+ +Q L+ Y + A ++++ + DV+
Sbjct: 609 NTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNL 668
Query: 135 -----------WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
W +I++G + G KE+ + F + D++ + T+V++++ CSSL +
Sbjct: 669 FDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPAL 728
Query: 181 KLGKAIHAHSLRNLNEN-NIILDNAVLD 207
+ G +H+ ++ N +++L+ A++D
Sbjct: 729 EHGDQLHSLIIKKGFVNCSVVLETALVD 756
Score = 40.0 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV---TVKDIF 118
S N ++ ++ C +++ Q+G IH +I G+ D ++ +L Y + D+
Sbjct: 67 SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLSACS 175
A ++F + ++ W T+I ++ + E + ++ + N + T SV+ AC
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI 186
Query: 176 SL----GSRKLGKAI 186
++ G R+L ++
Sbjct: 187 AMEDMGGVRQLQSSV 201
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+ +++ N L Q A+ L+ +M+ N ++ + + AC+ +
Sbjct: 217 EIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSR 276
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH ++IK G+ D F N+L+ Y V D+ A +F + PD+V+W +I+G
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
H++A+++ + + PN TL S L AC+ +G ++LG+ +H+ ++ E+++ +
Sbjct: 337 HEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFV 396
Query: 202 DNAVLD 207
++D
Sbjct: 397 SVGLVD 402
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+++ Q + A+ L+ +M + + + + L AC+ A ++G ++H H++
Sbjct: 529 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 588
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
KYG + DIF NSL++ Y I A + F+ + +V+W+ +I GL++ G ++A+
Sbjct: 589 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 648
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + V PN TLVSVL AC+ G
Sbjct: 649 LFNQMLKEGVSPNHITLVSVLGACNHAG 676
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 43/223 (19%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLL-------------KLLTQSSTP--- 47
KSL+P L QIHA I K P I N L+ KL+ +SS P
Sbjct: 70 KSLRPGL------QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLV 123
Query: 48 ----------QN-----AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
QN A+ +++M N +TF+ LKACS+ + G ++H V
Sbjct: 124 SWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVV 183
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G D+F+ N+L+ Y + + ++F+ + +VV+W + S + F EA+
Sbjct: 184 VVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAV 243
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+F + +KPN +L S+++AC+ L GK IH + ++
Sbjct: 244 GLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 29 PQPHILNTLLKLLTQSSTPQNA--IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P P ++ T+ + S PQ + L +K P+S ++++ L C + + GL
Sbjct: 23 PAPKLIQTVPQF---SQDPQTTAILNLIDKGNFTPTSV---SYSKLLSQCCTTKSLRPGL 76
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHAH+ K G D I+N L++ Y ++ A ++ + PD+V+W+ +ISG ++ G
Sbjct: 77 QIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNG 136
Query: 147 FHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
A+ F + VK N T SVL ACS + ++GK +H + + E ++ + N
Sbjct: 137 LGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196
Query: 204 AVL 206
++
Sbjct: 197 TLV 199
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q A+ L+ +M +N T + LK+ + ++H +K
Sbjct: 429 NAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK 488
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI++ NSL+ Y + A +IF D+V++T++I+ ++ G +EA+ +
Sbjct: 489 SGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 548
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F +++KP+ S+L+AC++L + + GK +H H L+
Sbjct: 549 FLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 589
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KI QP I+ N ++ + A+ L +M N +T + ALKAC+ +
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKEL 377
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G ++H+ ++K D+F+ L+ Y + A FN + D++ W IISG S+
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
EA+ +F + + N TL ++L + + L + + +H S+++ ++I +
Sbjct: 438 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 497
Query: 202 DNAVLD 207
N+++D
Sbjct: 498 VNSLID 503
>gi|302759777|ref|XP_002963311.1| hypothetical protein SELMODRAFT_26969 [Selaginella moellendorffii]
gi|300168579|gb|EFJ35182.1| hypothetical protein SELMODRAFT_26969 [Selaginella moellendorffii]
Length = 205
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 4/168 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+ P A+ L+ +M + + + T + AC+ A ++G +H H+I G DI
Sbjct: 7 REDRPLQALELWEEMEDRGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIP 66
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
++ +LL Y + A ++F + +V ++T +IS + G H EA+++F +
Sbjct: 67 LETALLQMYAKCGSLDDAKRVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVE 126
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++PNA T ++L A LG+ + G+ +H H + N+++ NA++
Sbjct: 127 AIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALV 174
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
++ Q+ A+ L+++M + N YTF L A +KG ++H H+
Sbjct: 100 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 159
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G ++ +QN+L+ Y A ++F+S+ +V++WT++I
Sbjct: 160 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMI 205
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT+L Q P + L+ ML +H T L+ C + + G ++H + +K
Sbjct: 442 NTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLK 501
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + FI+N L+ Y + A +IF+S+ DVV+W+T+I G ++ GF +EA+ +
Sbjct: 502 TGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALIL 561
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + ++PN T V VL+ACS +G + G ++A
Sbjct: 562 FKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYA 598
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ AI LY KML + + F +KAC+ + G ++HA VIK +
Sbjct: 144 SQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHL 203
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCG 157
QN+L+ YV + A ++F + D+++W++II+G S+ GF EA+ +M
Sbjct: 204 IAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSF 263
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
PN S L ACSSL G IH +++ N I ++ D
Sbjct: 264 GVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCD 313
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ L + A+ ++++M + + + L A + A +G
Sbjct: 331 IERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQG 390
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSK 144
++IH+++IK+G L D+ + NSLL Y D++ +F D V+W TI L+
Sbjct: 391 MQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTI---LTA 447
Query: 145 CGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
C H++ ++M + +P+ T+ ++L C + S KLG +H +SL+
Sbjct: 448 CLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPE 507
Query: 199 IILDNAVLD 207
+ N ++D
Sbjct: 508 QFIKNGLID 516
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+ + ACS + + +G +IH H++ +D + N +L Y + A ++F+ +
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
++V++T++I+G S+ G EAI ++ + D+ P+ S++ AC+S LGK
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
+HA ++ + +++I NA++
Sbjct: 189 QLHAQVIKLESSSHLIAQNALI 210
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N Y F +LKACS G +IH IK + SL Y + SA ++F
Sbjct: 269 NEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVF 328
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRK 181
+ + PD +W II+GL+ G+ EA+ +F + P+A +L S+L A + +
Sbjct: 329 DQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALS 388
Query: 182 LGKAIHAHSLR 192
G IH++ ++
Sbjct: 389 QGMQIHSYIIK 399
Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-I 93
+TL+ QS + A+ L+ +M + NH TF L ACS ++GL+++A +
Sbjct: 543 STLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQT 602
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-------PDVVTWTTIISGLSKCG 146
++G I + H V + A ++ + F PDVV W T++S G
Sbjct: 603 EHG------ISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQG 656
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 35/178 (19%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT----------- 113
N +TF LKAC+ ++G ++H V+K G + D F++++L+ YV
Sbjct: 122 NKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLF 181
Query: 114 ---------------------VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ D+ ++ ++F+S+ VV+W +ISG ++ G KEAI
Sbjct: 182 YQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAI 241
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+MF + DV PN TLVSVL A S LG+ +LGK +H + +N E + +L +A++D
Sbjct: 242 EMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALID 299
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+IHAH IK G +H LL F T ++I A + F+ + P+ +W TII L+
Sbjct: 33 QIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALAD 92
Query: 145 CG----FHKEAID-------MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
FH +++ M V+PN T VL AC+ L + GK +H ++
Sbjct: 93 SDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVK 151
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 4/159 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + AI +++ M N+ T L A S A + G +H K
Sbjct: 225 NVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEK 284
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKEAID 153
D + ++L+ Y I A Q+F + + +TW+ II GL+ G ++A+D
Sbjct: 285 NEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALD 344
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + V P+ + VLSACS G + G++I+ H
Sbjct: 345 HFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYH 383
>gi|222622633|gb|EEE56765.1| hypothetical protein OsJ_06312 [Oryza sativa Japonica Group]
Length = 836
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA-HAHQKGLEIHAHVI 93
N+++ +++ + A+ L+ +M++ N+ T L CSL + G EIH V+
Sbjct: 136 NSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVV 195
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
++G DI + N+L+ Y V ++ + IF S D+VTW T+I+G + A+
Sbjct: 196 RHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALK 255
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN---LNENNIILDNAVLD 207
+F G+ + P++ +L+S+L+AC+ +G+ ++G +H + R+ L E +++ NA++
Sbjct: 256 LFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLM--NALVS 313
Query: 208 F 208
F
Sbjct: 314 F 314
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIF 124
T L C+ + G IH +VIK G D N+L+ Y + AH F
Sbjct: 65 TVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAF 124
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG-SR 180
+++ DVV+W +II+G S+ G +EA+ +F + + PN +TL +VL CS + R
Sbjct: 125 STICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGR 184
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVL 206
GK IH +R+ E +I + NA++
Sbjct: 185 HYGKEIHGFVVRHGLEMDISVSNALM 210
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N + +L Q+ A L++++ + + + + T L AC + Q + H ++++
Sbjct: 472 NLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLR 531
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L DI ++ +LL Y +I +A+ +F + D+V +T +I + G ++A+++
Sbjct: 532 -ASLEDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVEL 590
Query: 155 FCG---IDVKPNANTLVSVLSACSSLG 178
F +D+KP+ L ++LSACS G
Sbjct: 591 FSKMLTLDIKPDHVVLTALLSACSHAG 617
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + P A+ L+ +L + + + L AC+ + G+ +H ++ +
Sbjct: 238 NTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFR 297
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ L + + N+L+ FY +A + F ++ D V+W I+S + H E
Sbjct: 298 HPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFF 357
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G DV + + + S+ K+ + H +SLR + + NA+LD
Sbjct: 358 RLLGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILD 414
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVK- 161
+ Y + + AH +F+ + D V +I+ S+ G + + +F G+D
Sbjct: 1 MDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESM 60
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
P A T+ VL C+ L + G++IH + ++ E + + NA++
Sbjct: 61 PTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALV 105
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 94 KYGHLHD------------IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
K G+LHD I N+++ Y+ + A FN + D+ TW +
Sbjct: 418 KCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRL 477
Query: 142 LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ +A +F + + P+ ++ ++LSAC L S +L K H + LR E +
Sbjct: 478 YAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE-D 536
Query: 199 IILDNAVLD 207
I L+ A+LD
Sbjct: 537 IHLEGALLD 545
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++AI +YNKM N TF LKAC+ A + G +IH H+ G D+ + N+L
Sbjct: 88 EDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLRLGNAL 147
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNA 164
+H Y + A +FN +V D++TW +I L + G EA +F + + P+
Sbjct: 148 IHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFLQMQREGFVPDT 207
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T +S+L+A + G+ K +H+H+LR E+++ + A++
Sbjct: 208 TTYLSMLNANACTGALGWVKEVHSHALRAGLESDVRVGTALV 249
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK-ACSLAHAHQKGLEIHAHVI 93
N+++ L Q A L+ +M + T+ L AC+ A Q ++H
Sbjct: 277 NSMIGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVHDDAA 336
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D+ + N+L+H Y + A ++F +V DVV+WT +I GL++ GF +EA
Sbjct: 337 KVGLDFDVRVGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFS 396
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + + PN T +S+L+ +S G+ + K +H H++ ++++ + NA++
Sbjct: 397 LFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAELDSHLRVGNALI 452
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC+ A + E+H+H ++ G D+ + ++L+H Y I A +F +
Sbjct: 513 TLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGM 572
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVK--PNANTLVSVLSACSSLGSRKLGK 184
D++TW +I GL++ G EA +F + DV P+A T +S+L S+ + + K
Sbjct: 573 ASRDIITWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSILGGNVSIEALEWVK 632
Query: 185 AIHAHSLR 192
+H H++R
Sbjct: 633 EVHRHAVR 640
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q + A L+ +M N T+ L + A + E+H H +
Sbjct: 385 LAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAELDSH 444
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160
+ + N+L+H Y I +A +F+ + D+++W +I GL++ G +EA F +
Sbjct: 445 LRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLEMQR 504
Query: 161 K---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ P+A TLVS+L+AC+S + K +H+H+L E+++ + +A++
Sbjct: 505 EGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSALV 553
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N ++ L Q A L+ +M P + + + A AC+ A K E+H+H
Sbjct: 176 NVMIGRLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNA-NACTGALGWVK--EVHSH 232
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ G D+ + +L+H Y I A +F+ + +++TW ++I GL++ G EA
Sbjct: 233 ALRAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEA 292
Query: 152 IDMFCGID---VKPNANTLVSVL-SACSSLGSRKLGKAIH 187
+F + + P+A T V++L +AC+S G+ + + +H
Sbjct: 293 FSLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVH 332
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
S + YT+ L+ ++H +IK ++ N L+ Y+ + + +
Sbjct: 2 SIDSYTYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTRE 61
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F+++V +V WT +I G ++ ++AI+++ + V+PN T ++L AC+S +
Sbjct: 62 VFDTLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMA 121
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
K G+ IH H ++++ L NA++
Sbjct: 122 LKWGRKIHDHIRHAGFQSDLRLGNALI 148
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 6/206 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY- 64
+K+L+P + F N + K+ N + L + AI + + L + +
Sbjct: 2 IKALRPQVGFATNNVKETVLSKLRAEQSSNEYITTLCKQKLFNEAIKAF-EFLQKKTGFC 60
Query: 65 -NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
T+ + ACS + + G +IH H++K D+ +QN +L+ Y + A ++
Sbjct: 61 LTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKV 120
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+++ +VV+WT++I+G S+ G A++ + + V P+ T S++ ACSSLG
Sbjct: 121 FDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDI 180
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVL 206
LG+ +HAH L++ +II NA++
Sbjct: 181 GLGRQLHAHVLKSEFGAHIIAQNALI 206
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 58 LNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
L C S + ++ T T L A + + + G ++H + +K G DI + N L+ Y
Sbjct: 459 LMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCG 518
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLS 172
+ +A +IF+SV+ PDVV+W+++I G ++ G+ +EA+ +F +DVKPN T V VL+
Sbjct: 519 SLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLT 578
Query: 173 ACSSLG 178
ACS +G
Sbjct: 579 ACSHVG 584
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ NA+ Y +ML + +TF +KACS G ++HAHV+K I
Sbjct: 140 SQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHI 199
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----C 156
QN+L+ Y I A +F+ + D+++W ++I+G S+ G+ EA+ F
Sbjct: 200 IAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQ 259
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G+ + PN SV SACSSL + G+ +H S++
Sbjct: 260 GVYL-PNEFIFGSVFSACSSLLQPEYGRQLHGMSIK 294
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + F ACS + G ++H IK+G D+F SL Y + A +F
Sbjct: 265 NEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVF 324
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ PD+V W II+G + G KEAI F + + P+ T+ S+L AC+S
Sbjct: 325 YQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELY 384
Query: 182 LGKAIHAH 189
G +H +
Sbjct: 385 QGMQVHGY 392
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I +P ++ N ++ + AI +++M + + T L AC+ +
Sbjct: 326 QIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQ 385
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLS 143
G+++H ++ K G D+ + N+LL Y ++ A F + D+V+W I L+
Sbjct: 386 GMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAI---LT 442
Query: 144 KCGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
C H +A ++F C +P+ TL +VL A + S ++G +H ++L+
Sbjct: 443 ACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 502
Query: 198 NIILDNAVLDF 208
+I + N ++D
Sbjct: 503 DISVTNGLIDL 513
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P +I N++++ + S P A+ Y +ML S +++TF LKACS Q G
Sbjct: 66 IDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFG 125
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H V+K G ++++ LLH Y+ ++ ++F + +VV W ++ISG
Sbjct: 126 SCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNN 185
Query: 146 GFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+AI+ F I VKPN +V +L AC G+ + E N+IL
Sbjct: 186 NRFSDAIEAFREMQSIGVKPNETIMVDLLVAC--------GRCFDPYCQSKF-EFNVILA 236
Query: 203 NAVLD 207
+++D
Sbjct: 237 TSLID 241
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 90/173 (52%), Gaps = 7/173 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +++ N+++ +Q+ + A+ +++ ML+ + + TF ++A + Q G
Sbjct: 259 MPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLG 318
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
IHA+V K G + D I +L++ Y + SA ++F + D + WT +I GL+
Sbjct: 319 QTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASH 378
Query: 146 GFHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
G +A+ +F + + NA T + VL ACS +G + G+ A +R+L
Sbjct: 379 GHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAE-MRDL 430
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC--- 156
++ + SL+ Y D+ +A +F+ + ++V+W +II+G S+ G +EA+ MF
Sbjct: 232 NVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDML 291
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + P+ T SV+ A G +LG+ IHA+ +++ + D A++
Sbjct: 292 DLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAY----VSKTGFVKDAAIV 337
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIFNSVVFPDVVTWTTIISGLS 143
++H +IK + ++ + L+ F T + + A +F S+ P V W ++I G S
Sbjct: 23 QLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYS 82
Query: 144 KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+A+ + + K P+ T VL ACS L + G +H ++ E N+
Sbjct: 83 NSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMY 142
Query: 201 LDNAVL 206
+ +L
Sbjct: 143 VSTCLL 148
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 100/195 (51%), Gaps = 36/195 (18%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLE 87
P ++ NT+ ++ S TP +A+ L+ M + YTF LKACS LAH KG E
Sbjct: 50 PSTYLYNTMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHL-LKGQE 108
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS-KCG 146
+H +K+G +F++NSL+H Y + + SA ++F+ + + D+ +WTT+++ + C
Sbjct: 109 LHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCS 168
Query: 147 FH------------------------------KEAIDMF---CGIDVKPNANTLVSVLSA 173
+EA+++F + ++P+ + ++SVL A
Sbjct: 169 VEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCA 228
Query: 174 CSSLGSRKLGKAIHA 188
C++LG+ +G+ +++
Sbjct: 229 CANLGALDVGRWVYS 243
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ +++ +L + + + A+ L+ ++ + + L AC+ A
Sbjct: 178 EMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDV 237
Query: 85 GLEIHAHVI-KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +++ V G D I +L+ + I A +F V WT ++SGL+
Sbjct: 238 GRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLA 297
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G ++ I+ F + +KP+ T V++LS CS G
Sbjct: 298 MHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSG 335
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ +S + LY +ML +++T+ LK C ++ GL + HV+
Sbjct: 126 NAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVL 185
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K+G DIF+ N+ + ++ ++ A+ +FN D+VTW ++I+G K G EAI
Sbjct: 186 KFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIK 245
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ ++ V+PN T++ ++S+CS + LGK H + + E I L NA++D
Sbjct: 246 IYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMD 302
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + AI +Y +M N T + +CS G E H ++ +
Sbjct: 228 NSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKE 287
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF------- 147
+G I + N+L+ YV ++ +A +F+++ +V+WTT++ G ++ GF
Sbjct: 288 HGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREI 347
Query: 148 ------------------------HKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSR 180
KEA+ +F + ++ P+ T+V+ LSACS LG+
Sbjct: 348 LYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGAL 407
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+G IH + R+ ++ L A++D
Sbjct: 408 DVGIWIHHYIERHKLSIDVALGTALVD 434
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 25 IIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+ KIP+ ++ N ++ Q+ + A+ L+++M + T L ACS A
Sbjct: 348 LYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGAL 407
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G+ IH ++ ++ D+ + +L+ Y +I A Q+F + + +TWT +I GL
Sbjct: 408 DVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGL 467
Query: 143 SKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGK 184
+ G ++A+ F I + P+ T + VLSAC G + G+
Sbjct: 468 ALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGR 512
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ +S + LY +ML +++T+ LK C ++ GL + HV+
Sbjct: 126 NAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVL 185
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K+G DIF+ N+ + ++ ++ A+ +FN D+VTW ++I+G K G EAI
Sbjct: 186 KFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIK 245
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ ++ V+PN T++ ++S+CS + LGK H + + E I L NA++D
Sbjct: 246 IYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMD 302
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + AI +Y +M N T + +CS G E H ++ +
Sbjct: 228 NSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKE 287
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF------- 147
+G I + N+L+ YV ++ +A +F+++ +V+WTT++ G ++ GF
Sbjct: 288 HGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREI 347
Query: 148 ------------------------HKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSR 180
KEA+ +F + ++ P+ T+V+ LSACS LG+
Sbjct: 348 LYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGAL 407
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
+G IH + R+ ++ L A++D
Sbjct: 408 DVGIWIHHYIERHKLSIDVALGTALVD 434
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 25 IIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+ KIP+ ++ N ++ Q+ + A+ L+++M + T L ACS A
Sbjct: 348 LYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGAL 407
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G+ IH ++ ++ D+ + +L+ Y +I A Q+F + + +TWT +I GL
Sbjct: 408 DVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGL 467
Query: 143 SKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGK 184
+ G ++A+ F I + P+ T + VLSAC G + G+
Sbjct: 468 ALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGR 512
>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
Length = 667
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 22 HAQIIKIPQP---HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
H + ++PQP N+LL+ T + A+ +Y+ M +++H TF A KAC+
Sbjct: 65 HNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAM----RAFDHLTFPFAAKACAG 120
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
+ G +H + G D ++QN+L+ Y++ D+ +A +F ++ VV+W +
Sbjct: 121 LRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAV 180
Query: 139 ISGLSKCGFHKEAIDMF-------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
I+G K G+ + A+++F GID T+VSVL AC+ G+A+H
Sbjct: 181 IAGCVKNGYAERALEVFGEMAADGVGID----RATVVSVLPACAQAKDLNTGRAVH 232
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ ++ +M + T L AC+ A G +H V
Sbjct: 178 NAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVED 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAID 153
G + ++N+L+ Y + + A ++F+ DVV+WT +I EAI
Sbjct: 238 KGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAIS 297
Query: 154 MFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ C + + PN T+V +LSAC+S+ S K K HA +R +++I ++ A++D
Sbjct: 298 LGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALID 355
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L T S + AI L+ +M+ + T L A + + ++G IH ++
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI-- 152
G L I L+ Y D+ +A +F + DVV WTTII+G G + AI
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILL 500
Query: 153 -DMFCGIDVKPNANTLVSVLSACSSLG 178
D KPN T+ ++L ACS G
Sbjct: 501 YDRMVESGGKPNTVTIATLLYACSHAG 527
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 50 AIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
AI L +ML +++ N T L AC+ + + HA I+ G DI ++ +L+
Sbjct: 295 AISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALI 354
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y + + TW +SG + G K+AI++F + V+P++
Sbjct: 355 DAYARCGKMKLMRLTLERGSW-RAETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSA 413
Query: 166 TLVSVLSACSSLGSRKLGKAIH 187
T+ S+L A + K GK IH
Sbjct: 414 TMASILPAYAESADLKEGKNIH 435
>gi|302776320|ref|XP_002971335.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
gi|300161317|gb|EFJ27933.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
Length = 614
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ LL +++ + A+ +Y M N +TF+ + C+ A A +G ++H H
Sbjct: 350 LWTALLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHT 409
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G+ D+ + +L+ FY D+ +A +F+ + D+VTW +I+G + G +EA+
Sbjct: 410 VSVGYDKDVIVGTTLVDFYSKCHDVDTARSVFDGIEGKDIVTWNVMITGFVRNGHGREAV 469
Query: 153 DMFCGIDVKPNANTL---------VSVLSACSSLGSRKLG 183
++ +D+ P++ T+ +SVL ACS GS + G
Sbjct: 470 RLYQKMDLPPDSLTMGIMPDELTFLSVLFACSHGGSIQQG 509
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q+ + A+ LY M + TF L H G IH V++
Sbjct: 127 NAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGEH--GRRIHDQVVE 184
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N+L+ Y + + A +F+ + VV+W +++ ++ G + EA+D+
Sbjct: 185 SGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDL 244
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F +DV P+ + V+VL AC + + G+ +H H
Sbjct: 245 FWKMDVAPDTVSFVNVLGACMDI---EEGRLVHEH 276
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 34/205 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC------SLAHAHQKG--- 85
N +L Q+ A+ L+ KM P + +F L AC L H H K
Sbjct: 226 NAMLTAYAQNGRYGEAVDLFWKMDVAPDTV---SFVNVLGACMDIEEGRLVHEHIKASGF 282
Query: 86 -------------------LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
LE + D NS++ Y + A +F+
Sbjct: 283 PVGVLVSTSLVNMYGRFLRLEEAKQCFEQARERDRVCWNSMVGAYAQNGCMEEAKAVFDR 342
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
V D+V WT +++ S+ K A+ ++ +D ++ N T S++S C+ + G
Sbjct: 343 VASKDIVLWTALLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEG 402
Query: 184 KAIHAHSLRNLNENNIILDNAVLDF 208
+ +H H++ + ++I+ ++DF
Sbjct: 403 QKVHLHTVSVGYDKDVIVGTTLVDF 427
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS 175
A +F ++V + V+W +++ ++ G +EA+ ++ C +KP+A T VSVL
Sbjct: 110 EAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWK 169
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
G G+ IH + + +N L NA++
Sbjct: 170 GEGEH--GRRIHDQVVESGFGSNTTLANALV 198
>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
Length = 667
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 22 HAQIIKIPQP---HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
H + ++PQP N+LL+ T + A+ +Y+ M +++H TF A KAC+
Sbjct: 65 HNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAM----RAFDHLTFPFAAKACAG 120
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
+ G +H + G D ++QN+L+ Y++ D+ +A +F ++ VV+W +
Sbjct: 121 LRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAV 180
Query: 139 ISGLSKCGFHKEAIDMF-------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
I+G K G+ + A+++F GID T+VSVL AC+ G+A+H
Sbjct: 181 IAGCVKNGYAERALEVFGEMAADGVGID----RATVVSVLPACAQAKDLNTGRAVH 232
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L T S + AI L+ +M+ + T L A + + ++G IH ++
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI-- 152
G L I L+ Y D+ +A +F + DVV WTTII+G S G + AI
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILL 500
Query: 153 -DMFCGIDVKPNANTLVSVLSACSSLG 178
D KPN T+ ++L ACS G
Sbjct: 501 YDRMVESGGKPNTVTIATLLYACSHAG 527
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ ++ +M + T L AC+ A G +H V
Sbjct: 178 NAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVED 237
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAID 153
G + ++N+L+ Y + + A ++F+ DVV+WT +I EAI
Sbjct: 238 KGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAIS 297
Query: 154 MFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ C + + PN T+V +LSAC+S+ S K K HA +R +++I ++ A++D
Sbjct: 298 LGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALID 355
Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 50 AIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
AI L +ML +++ N T L AC+ + + HA I+ G DI ++ +L+
Sbjct: 295 AISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALI 354
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y + + TW +SG + G K+AI++F + V+P++
Sbjct: 355 DAYARCGKMKLMRLTLERGSW-RAETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSA 413
Query: 166 TLVSVLSACSSLGSRKLGKAIH 187
T+ S+L A + K GK IH
Sbjct: 414 TMASILPAYAESADLKEGKNIH 435
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + ++A+ + KM + + YT L + + Q + +H +IK
Sbjct: 10 NSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIK 69
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + N+L+ Y + A +F+ +V DVV+WT++++G S G ++EAI +
Sbjct: 70 TGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKL 129
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
FC + V P+ + SVLSAC+ L G+ IHA +++ E+++ +DN+++
Sbjct: 130 FCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLV 184
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L+ + + + + AI L+ KM + L AC+ G +IHA ++K
Sbjct: 112 SLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS 171
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI--- 152
G + + NSL+ Y I A++ F+++ DV++WT +I G ++ G K ++
Sbjct: 172 GLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFY 231
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKA 185
D KP+ T + +L ACS G G+A
Sbjct: 232 DQMIATGTKPDYITFIGLLFACSHNGLLGSGRA 264
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
F D V+W ++I G + GF ++A+ F + D+K + TL SVL++ +S+ + +
Sbjct: 3 FDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAIS 62
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
+H ++ E +++NA++D
Sbjct: 63 VHCLIIKTGFEAYKLVNNALIDM 85
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 34/214 (15%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P ++ NT++K L+ AI LYN++L ++ Y+ LKA A G +I
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQI 161
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-- 146
H I G + DI + +L+ Y + + A Q+F+ V F DV W +++G +K G
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDV 221
Query: 147 ------FHK-----------------------EAIDMFCGI---DVKPNANTLVSVLSAC 174
F + EAI MF + +V+P+ +++ LSAC
Sbjct: 222 DNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSAC 281
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG+ +LG+ IH + ++ + L+NA++D
Sbjct: 282 AHLGALELGEWIHNYIDKHGLSKIVPLNNALIDM 315
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++ Q P AI ++ +M + AL AC+ A +
Sbjct: 230 RMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALEL 289
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH ++ K+G + + N+L+ Y I A ++F ++ V+TWT++I GL+
Sbjct: 290 GEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLAL 349
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G +EA++MF ++ +KPN T V++LSAC +G ++G+
Sbjct: 350 HGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGR 392
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ +Q + A+ LY +M + + + + L AC+ A+++G ++H H IK+
Sbjct: 456 SMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKF 515
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + DIF NSL++ Y I A + F+ + +V+W+ +I G ++ G KEA+ +F
Sbjct: 516 GFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLF 575
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+ V PN TLVSVL AC+ G GK
Sbjct: 576 NQMLRDGVPPNHITLVSVLCACNHAGLVNEGK 607
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ I+ N L+ +Q +A+ L++KM + +N T + LK+ + A +
Sbjct: 345 MPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVC 404
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH IK G D ++ NSLL Y I A +IF + D+V +T++I+ S+
Sbjct: 405 KQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQY 464
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G +EA+ ++ + D+KP+ S+L+AC++L + + GK +H H+++
Sbjct: 465 GDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK 514
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L ++M + N +T + ALKAC+ + G ++H+ +IK D+F L+
Sbjct: 268 ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVD 327
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + + A + ++S+ D++ W +ISG S+CG H +A+ +F + D+ N T
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
L +VL + +SL + K+ K IH S+++ ++ + N++LD
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLD 428
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L QS A+ L+ +M+ N ++ + L AC+ G +IH ++K
Sbjct: 152 NALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLK 211
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK----- 149
G D F N+L+ Y +I A +F + PDVV+W II+G C H
Sbjct: 212 MGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAG---CVLHDCNDLA 268
Query: 150 -EAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+D G +PN TL S L AC+++G ++LG+ +H+ ++
Sbjct: 269 LMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK 312
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
++LL Q+ + A+ ++N+M N +TF LKACS+ G ++H +
Sbjct: 51 SSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVV 110
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ N+L+ Y + + ++F +V +VV+W + S + EA+ +
Sbjct: 111 TGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGL 170
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + + PN ++ +L+AC+ L LG+ IH L+
Sbjct: 171 FKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLK 211
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+E+HAH+IK+G D ++N L+ Y + A ++ + DVV+W++++SG +
Sbjct: 1 MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
GF +EA+ +F C + VK N T SVL ACS +G+ +H ++
Sbjct: 61 GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAV 109
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 113/256 (44%), Gaps = 69/256 (26%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
Q+ AQI + P + NT+++ +QS P + LY +M N + +TF+ LK C+
Sbjct: 68 QVFAQITE-PDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRL 126
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY------VTVKDIF--------------- 118
+ G +H V+KYG + F++N+L++F+ V + IF
Sbjct: 127 EWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALT 186
Query: 119 ----------SAHQIFNSVVFPDVV-------------------------------TWTT 137
A QIF+ + D+V TW T
Sbjct: 187 AGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNT 246
Query: 138 IISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+I+G G ++A++MF + P+ T++S+LSAC+ LG ++G+ +H S+ +
Sbjct: 247 MIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHC-SISEM 305
Query: 195 NENN--IILDNAVLDF 208
+ ++L NA++D
Sbjct: 306 TRGDLSVLLGNALVDM 321
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 9/166 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+ P+ ++ NT++ + A+ ++ +M N + T L AC+ Q
Sbjct: 235 EAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQV 294
Query: 85 GLEIHAHV--IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G ++H + + G L + + N+L+ Y I A Q+F + DV TW ++I GL
Sbjct: 295 GRKLHCSISEMTRGDLS-VLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGL 353
Query: 143 SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGK 184
+ G +E+I +F + ++KPN T V V+ ACS G+ + G+
Sbjct: 354 AFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGR 399
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 176
AHQ+F + PD+ W T++ G S+ + + ++ ++ VKP+ T +L C+
Sbjct: 66 AHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTR 125
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
L RK G +H L+ E N + N ++ F
Sbjct: 126 LEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYF 157
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 34/214 (15%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P ++ NT++K L+ AI LYN++L ++ Y+ LKA A G +I
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQI 161
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-- 146
H I G + DI + +L+ Y + + A Q+F+ V F DV W +++G +K G
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDV 221
Query: 147 ------FHK-----------------------EAIDMFCGI---DVKPNANTLVSVLSAC 174
F + EAI MF + +V+P+ +++ LSAC
Sbjct: 222 DNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSAC 281
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ LG+ +LG+ IH + ++ + L+NA++D
Sbjct: 282 AHLGALELGEWIHNYIDKHGLSKIVPLNNALIDM 315
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++ Q P AI ++ +M + AL AC+ A +
Sbjct: 230 RMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALEL 289
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH ++ K+G + + N+L+ Y I A ++F ++ V+TWT++I GL+
Sbjct: 290 GEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLAL 349
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G +EA++MF ++ +KPN T V++LSAC +G ++G+
Sbjct: 350 HGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGR 392
>gi|359485428|ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g58590-like [Vitis vinifera]
Length = 921
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 104/196 (53%), Gaps = 5/196 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
++++ ++PQ +++ NT++ L + ++ L+ +++ + + +F L
Sbjct: 204 IDEVVCAFEEMPQKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGAGLSECSFMGVLSG 263
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
+ + G ++H +IK G ++ + NSL++ YV I A ++F DVV+W
Sbjct: 264 FASEQDLELGEQVHDLLIKNGFDCEVSVLNSLINMYVKCSCICLAEKMFELGCVRDVVSW 323
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T+I L+K + +++F + V PN T VSV+++C++L G+ IHA +R
Sbjct: 324 NTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEYIHAKVIR 383
Query: 193 NLNENNIILDNAVLDF 208
N E+N+ + +A++DF
Sbjct: 384 NKIESNVFVGSALVDF 399
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ +P I+ N L+ ++ + L+ M ++YT L C+ G
Sbjct: 543 LEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYPDNYTVVSLLSVCTKLCNLALG 602
Query: 86 LEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
IH +IK D F+ N L+ Y I S+ +IFN ++ +++TWT +IS L
Sbjct: 603 SSIHGFIIKTDFKFCDTFVFNVLIDMYGKCGCIESSLKIFNKIIERNIITWTALISALGV 662
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G+ EA+ +F ++ KP+ LV+V SAC G K G
Sbjct: 663 NGYANEALKLFREMESLGFKPDGVALVAVFSACRHGGLVKEG 704
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L +S P + L+ KM N TF + +C+ G IHA VI+
Sbjct: 324 NTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEYIHAKVIR 383
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS-KC 145
++F+ ++L+ FY ++ SAH F+ + +VV W +I G S KC
Sbjct: 384 NKIESNVFVGSALVDFYAKCDNLESAHCCFDEIDEKNVVCWNALILGYSNKC 435
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
L H +I + +++ +L S+ +++ L +ML N ++F+ ALK+ S
Sbjct: 406 LESAHCCFDEIDEKNVVCWNALILGYSNKCFSSVSLLKRMLQLGYCPNEFSFSAALKS-S 464
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT---VKD--IFSA------------ 120
L Q ++H +++ G+ + ++ ++L+ Y + D IF A
Sbjct: 465 LVFELQ---QLHCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLVGPSN 521
Query: 121 ---------------HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
+F+ + PD+V+W +I+ ++ G +KE ++F + + P
Sbjct: 522 AIAGVYNKIGQYHRTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYP 581
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHA 188
+ T+VS+LS C+ L + LG +IH
Sbjct: 582 DNYTVVSLLSVCTKLCNLALGSSIHG 607
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 75 ACSLAHAHQKGLEIHAHVIKYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
AC A ++ +HA + IF+ N+L+ YV ++ +A ++F + +V
Sbjct: 60 ACKKAPTLKETKPLHALTVTMASNSTQPIFLYNNLISLYVLQGELSTARKVFGEMTQRNV 119
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177
V++ TII G S+ G +EA ++F + +P +T +LS C+SL
Sbjct: 120 VSYNTIIGGYSRNGSVEEAWNLFSEMRRYGFEPTQHTFAGLLS-CASL 166
>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Cucumis sativus]
Length = 616
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 43 QSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
Q + A+ L+ +ML CP + TF L +C + +++H+ +IK G
Sbjct: 303 QHEYGKEAVKLFRRMLRKDYCP---DELTFASLLSSCGFTSGASELMQVHSCLIKLGFEA 359
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---C 156
+ I N L++ Y I +A Q F V PD+VTWT+II GL+ CG K+A+ +F
Sbjct: 360 FLSINNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTSIICGLALCGLEKDAVKLFDKML 419
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLG 183
++P+ + VLSACS G +G
Sbjct: 420 SYGIRPDKIAFLGVLSACSHGGFVSMG 446
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N +L +S + AI ++ M + +TF+ L C + + G ++H +
Sbjct: 192 LWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSLCKYKGSGELGKQLHCLL 251
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK DI + +SL++ Y +++ A ++F+ + + V+WTT+I G + + KEA+
Sbjct: 252 IKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAV 311
Query: 153 DMFCGI---DVKPNANTLVSVLSACS 175
+F + D P+ T S+LS+C
Sbjct: 312 KLFRRMLRKDYCPDELTFASLLSSCG 337
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 12/147 (8%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKA + ++ + +H+ V+K G ++++ +QN LL YV +D+ SA +F+ + +V
Sbjct: 23 LKAAAPVNSIPRDTLLHSLVVKLGLINELSVQNKLLRVYVKCRDLDSARTLFDEMARRNV 82
Query: 133 VTWTTIISGLSKCGFHKE-----------AIDMFCGIDVKPNANTLVSVLSACSSLGSRK 181
V+W T+I GL G+ E M G+ V P+ T + +C L +
Sbjct: 83 VSWNTVICGLVDGGYGGEFKMRQHSIFLYFKKMLMGL-VDPDGITFNGLFRSCVVLNDVE 141
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ +H+ ++ + + + +AV+DF
Sbjct: 142 SGRQLHSFVMKIGFDLDCFVGSAVVDF 168
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 48 QNAIPLY-NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
Q++I LY KML + TF ++C + + + G ++H+ V+K G D F+ ++
Sbjct: 105 QHSIFLYFKKMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSA 164
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPN 163
++ FY A F+ +++ D+V W ++ +EAI++F + + K +
Sbjct: 165 VVDFYAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGD 224
Query: 164 ANTLVSVLSACSSLGSRKLGKAIH 187
T S+LS C GS +LGK +H
Sbjct: 225 DFTFSSLLSLCKYKGSGELGKQLH 248
>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
Length = 1033
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L + + + +++M Y+ +TF ALKA + + G IHA IK G
Sbjct: 227 LVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNET 286
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
++ N+L Y + ++F + PDVV+WT +I + G + A+D F +
Sbjct: 287 AYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRK 346
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
DV PN T SV+SAC++L K G+ IH H+LR
Sbjct: 347 SDVSPNEYTFASVISACANLAITKWGEQIHGHALR 381
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+ P +++ L+ Q + A+ + +M S N YTF + AC+ +
Sbjct: 312 KMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKW 371
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH H ++ G + + + NS++ Y + A +F+ + D+++W+TIIS +
Sbjct: 372 GEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQ 431
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
KEA + + KPN L SVLS C S+ + GK +HA++L
Sbjct: 432 GSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYAL 481
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + Q S + A + M N + L C + G ++HA+ +
Sbjct: 423 STIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALC 482
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G H+ + ++L+ Y ++ A +IF+S+ D+V+WT +I+G ++ G+ +EAI +
Sbjct: 483 IGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISL 542
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F + + P+ T + +L+AC+ G LG
Sbjct: 543 FENISSVGLMPDYVTFIGILTACNHAGLVDLG 574
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 44 SSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
++ A+ L++ M ++ + + + ALKAC+L G +H +K G ++ +F
Sbjct: 128 AANSNEALILFSNMWVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVF 187
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ ++L+ Y+ V +F ++ +VV+WT +I GL G + + F +
Sbjct: 188 VSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSK 247
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILD 202
V +++T L A + G GKAIHA +++ NE +++
Sbjct: 248 VGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVN 291
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 164
NS L + + I A +FN + D ++WT +I+G EA+ +F + V
Sbjct: 88 NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147
Query: 165 NT---LVSV-LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+VSV L AC+ + G+ +H S+++ N++ + +A++D
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVD 194
>gi|297841909|ref|XP_002888836.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334677|gb|EFH65095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 744
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 76/140 (54%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ AI L+ ++ + S + YTF+ LKAC+ + L IHA VIK G D + NS
Sbjct: 350 PERAILLFGQLRHEKLSPDWYTFSSVLKACAGLVTARHALSIHAQVIKGGFATDTVVNNS 409
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT 166
L+H Y + ++F+ + DVV+W +++ S G + +F +D+KP++ T
Sbjct: 410 LIHAYAKCGSLDLCKRVFDDMDSRDVVSWNSLLKAYSLHGQVDSILPVFQKMDIKPDSAT 469
Query: 167 LVSVLSACSSLGSRKLGKAI 186
+++LSACS G K G I
Sbjct: 470 FIALLSACSHAGRVKEGLRI 489
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 12/185 (6%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQ 71
+SF L + + + H L L+ L +S + A+ L+ P + + +
Sbjct: 8 ISFGTLRRFCSSALPSALKHELVEGLRTLVRSGDLRRALSLF---YCAPVELQSQHAYAA 64
Query: 72 ALKACSLAHAHQKGLEIHAHVIK--YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+AC+ + G+ +H H++ Y + ++ + N L+ Y +I A Q+F+++
Sbjct: 65 LFQACADQRNLRDGINLHHHMLSHPYCYSQNVILANYLITMYAKCGNILYARQVFDTMPE 124
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK--PNANTLVSVLSACSSLGSRKLGKAIH 187
+VV+WT +I+G ++ G ++ +F + PN L SVL+ C + GK +H
Sbjct: 125 RNVVSWTALITGYAQAGNEQDGFCLFSSMLAHCCPNEFALSSVLTLC----RYEPGKQVH 180
Query: 188 AHSLR 192
+L+
Sbjct: 181 GLALK 185
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 14/157 (8%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLN--CPSSYNHYTFTQALKACSLAHAHQ 83
+P+ ++++ L+ Q+ Q+ L++ ML CP N + + L C ++
Sbjct: 122 MPERNVVSWTALITGYAQAGNEQDGFCLFSSMLAHCCP---NEFALSSVLTLCR----YE 174
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ---IFNSVVFPDVVTWTTIIS 140
G ++H +K G I++ N+L+ Y D +A++ +F ++ F ++VTW ++I+
Sbjct: 175 PGKQVHGLALKLGLYCSIYVANALISMYGRCHDGTAAYEAWTVFEAMEFKNLVTWNSMIA 234
Query: 141 GLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL 177
C K+AI +F + +VL+ C++L
Sbjct: 235 AFQCCNLGKQAIGVFMRMHSDGVGFDRATVLNICTTL 271
Score = 37.4 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVF-PDVVTWTTIISGLS 143
L++H+ +K G + + +L+ Y + F+ +++F + D+V WT II+ +
Sbjct: 287 LQLHSLTVKSGLVTQTEVATALVKVYSEILGEFTDCYKLFMEMSHCRDIVAWTGIITAFA 346
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ AI +F + + P+ T SVL AC+ L + + +IHA ++ + +
Sbjct: 347 VYD-PERAILLFGQLRHEKLSPDWYTFSSVLKACAGLVTARHALSIHAQVIKGGFATDTV 405
Query: 201 LDNAVL 206
++N+++
Sbjct: 406 VNNSLI 411
>gi|242073178|ref|XP_002446525.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
gi|241937708|gb|EES10853.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
Length = 910
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH-AHQKGLEIHAHVI 93
N+++ ++ Q A+ L+ +M + S N+ T L CS G E+H+ V+
Sbjct: 254 NSVIAGYIENRLFQEALALFGQMTSQGSLPNYSTVASILPVCSFTEFGRYHGKEVHSFVV 313
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
++G D+ + N+L+ Y V ++ + IF S+ D+V+W TII+G G+H A+
Sbjct: 314 RHGLEMDVSVSNALMTHYSKVLEVKAVESIFMSMDVRDIVSWNTIIAGYVMNGYHYRALG 373
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN---LNENNIILDNAVLD 207
+F + P++ + +S+L+AC+ +G K G +H + L+ L E +++ NA++
Sbjct: 374 LFHELLSTGIAPDSVSFISLLTACAQVGDVKAGMGVHGYILQRPVLLQETSLM--NALVT 431
Query: 208 F 208
F
Sbjct: 432 F 432
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSSYNHYTFTQALKACSLAHAHQK 84
P N L+ ++ ++A L+ ML+C S T + AC+ +
Sbjct: 140 PDAVCWNILITACSRRGLFEDAFVLFRSMLSCGVVEQSMPTAVTVAVIVPACAKWGHLRT 199
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTV---KDIFSAHQIFNSVVFPDVVTWTTIISG 141
G +H +V+K G D N+L+ Y + + AH+ F+S+ DVV+W ++I+G
Sbjct: 200 GRSVHGYVVKTGLESDTLCGNALVSMYAKCGGSRAMDDAHRAFSSIRCKDVVSWNSVIAG 259
Query: 142 LSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS-SLGSRKLGKAIHAHSLRNLNEN 197
+ +EA+ +F + + PN +T+ S+L CS + R GK +H+ +R+ E
Sbjct: 260 YIENRLFQEALALFGQMTSQGSLPNYSTVASILPVCSFTEFGRYHGKEVHSFVVRHGLEM 319
Query: 198 NIILDNAVL 206
++ + NA++
Sbjct: 320 DVSVSNALM 328
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++L Q+ A L+N + + + + T L+AC + Q + HA++++
Sbjct: 590 NLMIQLYAQNHMDDQAFSLFNHLQSEGLKPDLVSITNILEACIHLCSVQLVRQCHAYMLR 649
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L DI ++ +L+ Y +I +A+ IF V D+VT+T +I + G ++A+++
Sbjct: 650 -ASLEDIHLEGALVDAYSKCGNITNAYNIF-EVSSKDLVTFTAMIGCYAMHGMAEKAVEL 707
Query: 155 FCG---IDVKPNANTLVSVLSACSSLG 178
F +D++P+ L ++LSACS G
Sbjct: 708 FSKMIKLDIRPDHVVLTTLLSACSHAG 734
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGI--DVKPNANTLVSVLSACS 175
+F+ + PD V W +I+ S+ G ++A +F CG+ P A T+ ++ AC+
Sbjct: 133 VFDEMARPDAVCWNILITACSRRGLFEDAFVLFRSMLSCGVVEQSMPTAVTVAVIVPACA 192
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
G + G+++H + ++ E++ + NA++
Sbjct: 193 KWGHLRTGRSVHGYVVKTGLESDTLCGNALV 223
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + A+ L++++L+ + + +F L AC+ + G+ +H ++++
Sbjct: 356 NTIIAGYVMNGYHYRALGLFHELLSTGIAPDSVSFISLLTACAQVGDVKAGMGVHGYILQ 415
Query: 95 YG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI- 152
L + + N+L+ FY A + F ++ D ++W I+S + H E
Sbjct: 416 RPVLLQETSLMNALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACAHSEQHIEKFF 475
Query: 153 ----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+M G++ + ++ T+++V+ + G + + +A H SLR + NA+LD
Sbjct: 476 VLMSEMCRGVN-QWDSVTVLNVIHVSTFCGIKMVREA-HGWSLRVGYTGETSVANAILD 532
Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 93 IKYGHLHDIFI------------QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+K G+ HD I N ++ Y+ I A IFN + D+ +W +I
Sbjct: 535 VKCGYSHDANILFRNHGGRNTVTDNIMISCYLKNNCIEDAEVIFNHMAEKDLTSWNLMIQ 594
Query: 141 GLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ +A +F + +KP+ ++ ++L AC L S +L + HA+ LR E
Sbjct: 595 LYAQNHMDDQAFSLFNHLQSEGLKPDLVSITNILEACIHLCSVQLVRQCHAYMLRASLE- 653
Query: 198 NIILDNAVLD 207
+I L+ A++D
Sbjct: 654 DIHLEGALVD 663
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 18/196 (9%)
Query: 14 SFKQLNQIHAQIIK--IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
S + + Q HA +++ + H+ L+ ++ NA ++ SS + TFT
Sbjct: 636 SVQLVRQCHAYMLRASLEDIHLEGALVDAYSKCGNITNAYNIFEV-----SSKDLVTFTA 690
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---- 127
+ ++ +K +E+ + +IK D + +LL + + +IF S+
Sbjct: 691 MIGCYAMHGMAEKAVELFSKMIKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIGEIH 750
Query: 128 -VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGSRKLG 183
V P + ++ L++ G ++A MF +D+ P NAN S+L AC G K+G
Sbjct: 751 RVVPTAEHYACMVDLLARSGHLQDAY-MF-ALDMPPHAVNANAWSSLLGACKVHGEIKIG 808
Query: 184 KAIHAHSLRNLNENNI 199
+ + A L ++ E +I
Sbjct: 809 Q-LAADQLFSMEEGDI 823
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
Length = 1347
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 97/183 (53%), Gaps = 6/183 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK-GLE 87
P + L+K AI LY+++++ + + + F L+AC+ + H G +
Sbjct: 621 PDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLSVGRK 680
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG-LSKCG 146
+H +IK G D I+ SLL Y ++ A ++F+ + D+V W+T++S L C
Sbjct: 681 VHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCE 740
Query: 147 FHKEAIDMF-CGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
K A+ MF C +D V+P+A T++SV+ C+ LG ++ +++H R + + + L N
Sbjct: 741 VLK-ALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCN 799
Query: 204 AVL 206
++L
Sbjct: 800 SLL 802
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+ + L A+ L+ +M+ + +T + AC + G +IH HVI+
Sbjct: 932 NSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIR 991
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D F+QNS++ Y + A +F+ + +VTW +++ G S+ G EAI++
Sbjct: 992 -TDVSDEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINL 1050
Query: 155 F------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F C ++ N T ++V+ ACSS+GS + G+ +H H L ++ D A++D
Sbjct: 1051 FDYMYHSC---LEINKVTFLAVIQACSSIGSLEKGRWVH-HKLIVCGIKDLFTDTALID 1105
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L +Q+ AI L++ M + N TF ++ACS + +KG +H +I
Sbjct: 1032 NSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIV 1091
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+F +L+ Y D+ +A +F ++ +V+W+++I+ G AI
Sbjct: 1092 CG-IKDLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAIST 1150
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + KPN ++VLSAC GS + GK
Sbjct: 1151 FNQMVESGTKPNEVVFMNVLSACGHSGSVEEGK 1183
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+TL+ ++ A+ ++ M++ + T ++ C+ + +H + +
Sbjct: 729 STLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITR 788
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D + NSLL Y D+ S+ +IF + + V+WT +IS ++ F ++A+
Sbjct: 789 KMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRS 848
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + ++PN TL S+LS+C G + GK++H ++R
Sbjct: 849 FSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIR 889
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQN 105
+ A+ +++ML N T L +C L ++G +H I+ L + +
Sbjct: 843 EKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRR-ELDPNYESLSP 901
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
+L+ Y + I + V ++V W + IS + G EA+ +F + +KP
Sbjct: 902 ALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKP 961
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ TL S++SAC + G +LGK IH H +R + ++ + N+V+D
Sbjct: 962 DSFTLASIISACENTGLVRLGKQIHGHVIRT-DVSDEFVQNSVID 1005
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 87 EIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HAH++ G L D L+ Y + S+ +F + +PD + +I C
Sbjct: 577 QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWC 636
Query: 146 GFHKEAIDMFCG-IDVKPNANTLV--SVLSACSSLGSRK---LGKAIHAHSLRNLNENNI 199
AID++ + K + V SVL AC+ GSR+ +G+ +H +++ +++
Sbjct: 637 HLLDAAIDLYHRLVSEKTQISKFVFPSVLRACA--GSREHLSVGRKVHGRIIKSGVDDDA 694
Query: 200 ILDNAVL 206
+++ ++L
Sbjct: 695 VIETSLL 701
>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 765
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 11/160 (6%)
Query: 22 HAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81
HAQ++++ + + L+ A+ L++K+ + +TF+ L CS A
Sbjct: 355 HAQMMELSKDN--------LSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVCSKMMA 406
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
++G +IHA IK G L D+ + +S+++ Y I A ++F + ++ WTT+I+G
Sbjct: 407 LEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVFLEMSIRTMILWTTMITG 466
Query: 142 LSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLG 178
++ G+ K+A+++F + ++PN T V VLSAC S G
Sbjct: 467 FAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAG 506
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
L+K Q+S P++AI L+ +ML Y ++YT AL AC+ H+ + G ++HA++IKY
Sbjct: 145 LMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKLGEQLHAYIIKY 204
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAH-QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D I N+L Y F + DV++WT IS + G + + +
Sbjct: 205 HVDFDTSIGNALCSLYTKCGGKLEVGLTAFRRIKEKDVISWTAAISACGEKGEAMKGVRV 264
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + V+PN TL S LS C + +LG +HA + E+N+ + N++L
Sbjct: 265 FVEMLLDEVQVQPNEYTLTSALSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLL 321
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 88/158 (55%), Gaps = 14/158 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT T AL C + G+++HA K G+ ++ ++NSLL+ Y+ I A ++F
Sbjct: 278 NEYTLTSALSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLF 337
Query: 125 NSVVFPDVVTWTTIISG------LSK---CGFHK--EAIDMFCGID---VKPNANTLVSV 170
+ ++VTW +I+G LSK + K EA+++F ++ +KP+ T SV
Sbjct: 338 KGMNDVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSV 397
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
LS CS + + + G+ IHA +++ +++++ +++++
Sbjct: 398 LSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINM 435
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
SS+ Q L+ CS + IH H++K G D F+ + L+ Y + A
Sbjct: 73 SSFYPPLLQQCLENCSFSSTQI----IHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQ 128
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSL 177
Q+F+ + + V WT ++ G + K AI +F + + P+ TL L+AC+SL
Sbjct: 129 QVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSL 188
Query: 178 GSRKLGKAIHAHSLR 192
S KLG+ +HA+ ++
Sbjct: 189 HSLKLGEQLHAYIIK 203
>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L+ ++ + AI L+ +M N Y+F L AC + + GL++HA IK
Sbjct: 172 SALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIK 231
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ +F+ N+L+ Y + A +F+ + D+ +W T+IS L K +++A+++
Sbjct: 232 LGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALEL 291
Query: 155 FCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F ++ K + TL ++L+AC+ +R G+ IHA+++R ENN+ + NA++ F
Sbjct: 292 FRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGF 349
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAH 82
++PQ I NT++ L + + + A+ L+ ++LN + + +T + L AC+ HA
Sbjct: 263 EMPQRDIASWNTMISSLVKGLSYEKALELF-RVLNQNKGFKADQFTLSTLLTACARCHAR 321
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+G EIHA+ I+ G +++ + N+++ FY + +F + D++TWT +I+
Sbjct: 322 IQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAY 381
Query: 143 SKCGFHKEAIDMF 155
+ G A+DMF
Sbjct: 382 MEFGLVDLAVDMF 394
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA ++K G D + N+++ Y+ + + A+++F + PDVV+++ +IS SK
Sbjct: 126 LHASILKLGE--DTHLGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNR 183
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
EAI +F + ++PN + V++L+AC ++G +HA +++ + + NA
Sbjct: 184 ETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANA 243
Query: 205 VL 206
++
Sbjct: 244 LI 245
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 8/174 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ + + N LL +++ A+ L+ +M+ + +T T + AC L +
Sbjct: 396 KMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEI 455
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGL 142
+IH +IK+G + I+ +L+ + A ++F S+ + + T++I G
Sbjct: 456 SRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGY 515
Query: 143 SKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
++ G +EAI +F + + S+L C +LG ++GK IH +L+
Sbjct: 516 ARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALK 569
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSS----YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
++ P+ AI L+ + C S + FT L C H+ G +IH +K G
Sbjct: 516 ARNGLPEEAICLFYR---CQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGF 572
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG--LSKCGFHKEAIDMF 155
++ + NS++ Y +I A + FN++ DVV+W +I+G L + G EA+ ++
Sbjct: 573 HAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQG--DEALAIW 630
Query: 156 CGID---VKPNANTLVSVLSA 173
++ +KP+A T V ++SA
Sbjct: 631 SSMEKAGIKPDAITFVLIVSA 651
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 7/178 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + + ++ L+ KM + YTFT LK + + ++ +H +V+K
Sbjct: 127 NLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLK 186
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + NSL+ Y ++ SA +F+ + DVV+W ++ISG + GF + ++
Sbjct: 187 LGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEF 246
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F G+DV ++ TLV+VL AC+++G+ LG+A+HA+ ++ ++ +N +LD
Sbjct: 247 FIQMLNLGVDV--DSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLD 302
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+++M + + Y T + AC+ +++ KG E+H H+ K ++ + N+L++
Sbjct: 344 AIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMN 403
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTL 167
Y + A+ IF+ + ++V+W T+I G S+ EA+ +F + +KP+ T+
Sbjct: 404 MYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTM 463
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLR 192
VL AC+ L + + G+ IH H LR
Sbjct: 464 ACVLPACAGLAALEKGREIHGHILR 488
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ 71
S ++ N I +Q+ P +I+ NT++ +Q+S P A+ L+ M + T
Sbjct: 410 SMEEANLIFSQL---PVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLKP-DDVTMAC 465
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
L AC+ A +KG EIH H+++ G+ D+ + +L+ YV + A Q+F+ + D
Sbjct: 466 VLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKD 525
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLG 183
++ WT +I+G GF KEAI F + V +P ++ S+L AC+ G K G
Sbjct: 526 MILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEG 580
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ T + +N + + +MLN + T L AC+ G +HA+ +K
Sbjct: 228 NSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVK 287
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + N+LL Y ++ A+++F + +V+WT+II+ + G H EAI +
Sbjct: 288 AGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGL 347
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P+ + SV+ AC+ S G+ +H H +N +N+ + NA+++
Sbjct: 348 FDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMN 403
Score = 45.1 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+NA+ L ++ N T+ L+ C+ + + G +H+ + G D + L
Sbjct: 41 RNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKL 98
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ YV D+ +IF+ ++ + W ++S +K G ++E++ +F + ++ ++
Sbjct: 99 VFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDS 158
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T VL ++ + K +H + L+
Sbjct: 159 YTFTCVLKGFAASAKVRECKRVHGYVLK 186
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
LS + L + H +I +P +L N ++ L++S P +AI YN M +H TF
Sbjct: 16 ALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTF 75
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
K+C+ ++G + H +K G F+ N+L+H YV ++ A ++F+ ++
Sbjct: 76 IFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLE 135
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
DVV+W +II G + K+ +D+F I+V+ ++ T++ +SA L ++G +
Sbjct: 136 RDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYL 195
Query: 187 HAHSLRNLNENNIILD 202
++ ++E+ +++D
Sbjct: 196 ----VKYIDEHGVVVD 207
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 5/157 (3%)
Query: 27 KIPQPHILNTLLKLLTQSSTPQ--NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P +++ ++ S Q A+ L+ +M+ + T AL AC+ +
Sbjct: 264 EMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDA 323
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++ K+ D+F+ NSL+ Y + A Q+FN + D V+WT+IISGL+
Sbjct: 324 GEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAV 383
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
GF + A+++F + + P T V VL AC+ +G
Sbjct: 384 NGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVG 420
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
+I N+++ Y V ++ +A ++FN + DV++WT++I G S H EA+ +F +
Sbjct: 238 NIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMM 297
Query: 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
VKP+ T+ + LSAC+ LGS G+A+H + ++ ++++ + N+++D
Sbjct: 298 VSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLID 348
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
I + H+ ++ + + AH +FN + P ++ W +I GLSK +AI + +
Sbjct: 8 ISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKG 67
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++ + T + + +C+ + + G+ + HS++ E+ + NA++
Sbjct: 68 IQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALI 114
>gi|242087927|ref|XP_002439796.1| hypothetical protein SORBIDRAFT_09g020210 [Sorghum bicolor]
gi|241945081|gb|EES18226.1| hypothetical protein SORBIDRAFT_09g020210 [Sorghum bicolor]
Length = 399
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+LL L +S P A+ + ML + +T L++C+L HA V+
Sbjct: 12 FNSLLASLARSGRPAQALCTFRDMLARGVRPDQFTLPPVLRSCTLTGDAGLASTSHALVV 71
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G ++F+ ++L+ Y + ++ A ++F+ + D V WT+++S ++ G A+
Sbjct: 72 KLGAQENLFVASALVLCYAGLSNLPDARRLFDGMRERDAVLWTSMLSAYAQGGEPDAALR 131
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + ++ +A +VS+L AC LG R+ G+++HA +R + L NA++D
Sbjct: 132 FFGSMVAAGMELDAVVMVSLLLACGQLGWRRHGRSVHACCVRRFLGMPLSLGNALVDM 189
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++L Q P A+ + M+ + L AC + G +HA
Sbjct: 112 LWTSMLSAYAQGGEPDAALRFFGSMVAAGMELDAVVMVSLLLACGQLGWRRHGRSVHACC 171
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++ + + N+L+ YV D A ++F + DV++W+ +I G G A+
Sbjct: 172 VRRFLGMPLSLGNALVDMYVKCGDFAFAERVFAGMPRRDVISWSALILGHGLNGHSDVAL 231
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLG 178
F ++ ++PN+ T + LSAC+ G
Sbjct: 232 RFFDRMEAEGIRPNSVTFLGALSACAHSG 260
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L Q+ + A+ LY +M Y + L +C+ A +G IHA K+G
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHG 173
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+IF+ N+++ Y+ A ++F + D VT+ T+ISG ++CG + A+++F
Sbjct: 174 FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ + P+ T+ S+L+AC+SLG + G +H++ + ++ I++ ++LD
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL 288
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q ++A+ + +M C ++ A+ C+ +A ++GL+IHA + G+ D+
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID--- 159
I N+L++ Y I A F + D +T ++SG ++ G H+EA+ +F +D
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSG 542
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
VK N T VS LSA ++L K GK IHA ++ + + NA++
Sbjct: 543 VKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M +N +TF AL A + ++G +IHA VIK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + N+L+ Y A F+ + + V+W TII+ S+ G EA+D+
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDL 635
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + +KPN T + VL+ACS +G
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVG 662
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 31 PH----ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
PH NTL+ Q ++A+ ++ +M S + T + L AC+ QKG
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H+++ K G D ++ SLL YV D+ +A IFNS +VV W ++ +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++ ++FC + ++PN T +L C+ LG+ IH+ S++ E+++ +
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSG 384
Query: 204 AVLD 207
++D
Sbjct: 385 VLID 388
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q + + L+ +M N +T+ L+ C+ G +IH+ +K
Sbjct: 314 NLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVK 373
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ L+ Y + A ++ + DVV+WT++I+G + K+A+
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAA 433
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F CGI P+ L S +S C+ + + + G IHA
Sbjct: 434 FKEMQKCGI--WPDNIGLASAISGCAGINAMRQGLQIHA 470
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 69 FTQALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
F AL+AC Q EIHA + G + N L+ Y + A ++F +
Sbjct: 44 FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
D V+W ++SG ++ G +EA+ ++ + V P L SVLS+C+ G+
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IHA ++ + I + NAV+
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVI 185
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL + T + ++N+ML + N YTF L++CS G ++HA ++K
Sbjct: 501 NALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK 560
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ +L+ Y + + A IFN ++ D+ WT I++G ++ G ++A+
Sbjct: 561 NSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKC 620
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + VKPN TL S LS CS + + G+ +H+ +++ ++ + +A++D
Sbjct: 621 FIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVD 676
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M N +T+ ALKACS+ + G ++HA IK G D+F+ ++L+
Sbjct: 213 AVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVD 272
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANT 166
Y ++ A ++F + + V+W +++G ++ G ++ +++FC G ++ + T
Sbjct: 273 LYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFT 332
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLR 192
L +VL C++ G+ + G+ +H+ ++R
Sbjct: 333 LSTVLKGCANSGNLRAGQIVHSLAIR 358
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
++I P +++ ++ L Q + A ++ +M + N +T + A +
Sbjct: 389 VRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLY 448
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL- 142
G IHA V KYG +D + N+L+ Y+ + + ++F + D+++W ++SG
Sbjct: 449 YGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFH 508
Query: 143 --SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
C + PN T +S+L +CSSL LGK +HA ++N + N
Sbjct: 509 DNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF 568
Query: 201 LDNAVLD 207
+ A++D
Sbjct: 569 VGTALVD 575
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q + + L+ +M +++ +T + LK C+ + + G +H+ I+
Sbjct: 299 NALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIR 358
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D FI L+ Y A ++F + PDVV+W+ II+ L + G +EA ++
Sbjct: 359 IGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEV 418
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + V PN TL S++SA + LG G++IHA
Sbjct: 419 FKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHA 455
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 44 SSTPQNAIP------LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+STP N IP + L+ S ++ L+ C+ +G IH VIK G
Sbjct: 100 NSTPGNKIPETVEKKRIWRGLDFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGI 159
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
D + NSL++ Y A ++F + DVV+WT +I+G G+ A+++FC
Sbjct: 160 NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219
Query: 158 I---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ V+ N T + L ACS + GK +HA +++ + +++ + +A++D
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDL 273
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q + A+ + +M N +T +L CS G ++H+ IK G D+F
Sbjct: 610 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 669
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ ++L+ Y + A +F+ +V D V+W TII G S+ G +A+ F +
Sbjct: 670 VASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEG 729
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
P+ T + VLSACS +G + GK H +SL +
Sbjct: 730 TVPDEVTFIGVLSACSHMGLIEEGKK-HFNSLSKI 763
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N++T + ALK+C+ A + G +H +K + D+++ +LL Y +I A Q F
Sbjct: 204 NNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFF 263
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSR 180
+ D++ W+ +IS ++ KEA+++FC + V PN T SVL AC+SL
Sbjct: 264 EEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLL 323
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
LG IH+ L+ ++N+ + NA++D
Sbjct: 324 NLGNQIHSCVLKVGLDSNVFVSNALMD 350
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + FT LK L +HA+V K GH D F+ +L+ Y ++ +A Q+F
Sbjct: 103 NQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVF 162
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRK 181
+ + F D+V+WT +++ ++ H++++ +FC + + +PN T+ + L +C+ L + K
Sbjct: 163 DGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFK 222
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
+GK++H +L+ + ++ + A+L+
Sbjct: 223 VGKSVHGCALKVCYDRDLYVGIALLEL 249
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++ QS + A+ L+ +M N++TF L+AC+ G +IH+ V+K
Sbjct: 277 MISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV 336
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G ++F+ N+L+ Y +I ++ ++F + V W TII G + G ++A+++F
Sbjct: 337 GLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLF 396
Query: 156 C---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G+D++P T SVL A +SL + + G+ IH+ +++ + + ++ N+++D
Sbjct: 397 SNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLID 451
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q + A+ L++ ML T++ L+A + A + G +IH+ IK
Sbjct: 377 NTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIK 436
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D + NSL+ Y I A F+ + D V+W +I G S G EA+++
Sbjct: 437 TMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNL 496
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
F + + KPN T V VLSACS+ G G+A
Sbjct: 497 FDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRA 530
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H H++K+G D+F QN LL+ YV + A ++F+ + + V++ T+ G S+
Sbjct: 22 GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81
>gi|297733701|emb|CBI14948.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 42/207 (20%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
F+Q+++ P N +++ T +P AI L+ +M + +TF LK
Sbjct: 81 FRQIDE--------PDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
CS A +G +IHA ++K G F++N+L+H Y ++ A ++F+ + +V T
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192
Query: 135 WTTIISGLSKCGFH-------------------------------KEAIDMFCGI---DV 160
W ++ +G +K G +EA+D+F + ++
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLYVEEKGLKGNPTLITSLVDIQASRCREALDLFHEMQKANI 252
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIH 187
PN T+VS+LS+C+ LG+ + GK +H
Sbjct: 253 DPNEITMVSILSSCAVLGALETGKWVH 279
>gi|255560231|ref|XP_002521133.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539702|gb|EEF41284.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 274
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 50/194 (25%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV------------ 112
N +TF LKAC+ Q+G ++H +VIK +D F+ ++L+ YV
Sbjct: 10 NRFTFPSVLKACAKTARLQEGKQVHGYVIKLRLDNDEFVASNLVRMYVMCGVMEDARVLF 69
Query: 113 -----------------------------------TVKDIFSAHQIFNSVVFPDVVTWTT 137
+ D+ + +F+++ + VV+W
Sbjct: 70 RKHVFEYDICSKSTSDKRKREGIVVLWNVMIDGYVRLGDLAVSRDLFDNMPYRTVVSWNV 129
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+ISG ++ G+ KEAI++F + D+ PN TLVSVL A S LG+ +LGK +H ++ +N
Sbjct: 130 MISGYAQNGYFKEAIELFHDMQMDDMSPNYVTLVSVLPAISRLGALELGKWVHLYAEKNN 189
Query: 195 NENNIILDNAVLDF 208
E N +L +A++D
Sbjct: 190 IEVNDVLGSALIDM 203
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + AI L++ M S N+ T L A S A + G +H + K
Sbjct: 128 NVMISGYAQNGYFKEAIELFHDMQMDDMSPNYVTLVSVLPAISRLGALELGKWVHLYAEK 187
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKEAID 153
+ + ++L+ Y I A Q+F S+ +VVTW+ II GL+ G K+A+D
Sbjct: 188 NNIEVNDVLGSALIDMYSKCGSIEKATQVFESIHNKMNVVTWSAIIGGLAMHGRAKDALD 247
Query: 154 MF 155
+
Sbjct: 248 YY 249
>gi|297746423|emb|CBI16479.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+++T+ +KAC + G +H+ ++K G D ++ N+LL Y + + A ++F
Sbjct: 9 DNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVF 68
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
N + DVV+W+++I+G C +A+ +F + + KPN+ TLVS+LSAC+ L +
Sbjct: 69 NEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIG 128
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
+G++IH++ + N ++ L A+L+
Sbjct: 129 VGESIHSYIIVNCIGLDVALGTAILEM 155
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ ++ M+ N T L AC+ G IH+++I D+ + ++L
Sbjct: 94 DALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAIL 153
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y I A ++FNS+ ++ +WT +ISGL+ ++AI +F ++ ++P++
Sbjct: 154 EMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSM 213
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ +LSACS LG G+ + ++ N
Sbjct: 214 SFSEILSACSHLGLVDEGQTFFSQMVKIYN 243
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +TF L +C+ + G +IH+ +IK + +F+ +SLL Y I A +F
Sbjct: 364 NEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF 423
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+ DVV+ T IISG ++ G +EA+++F G +K N T VL+A S L +
Sbjct: 424 ECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALD 483
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
LGK +H H LR+ + ++L N+++D
Sbjct: 484 LGKQVHNHVLRSEIPSFVVLQNSLID 509
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 26/164 (15%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L C A ++G +HAH+IK +L +F++ L+ Y + AH +F+ +
Sbjct: 246 YNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMP 305
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK-------------------------PN 163
+VV+WT +IS S+ G+ +A+++F DVK PN
Sbjct: 306 ERNVVSWTAMISAYSQRGYASQALNLFFA-DVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T +VL++C+S LG+ IH+ ++ E+++ + +++LD
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLD 408
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ ++ N+ T+T L A S A G ++H HV++ + +QNSL
Sbjct: 448 EEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSL 507
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
+ Y ++ + +IF+++ V++W ++ G SK G +E + +F + VKP+
Sbjct: 508 IDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPD 567
Query: 164 ANTLVSVLSACSSLG 178
+ T+++VLS CS G
Sbjct: 568 SVTILAVLSGCSHGG 582
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 36/216 (16%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P NT++K Q +P N+I LY+ ML N +TF ++AC + Q G
Sbjct: 104 IPNPDAFFYNTIIKAYLQHLSPTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLG 163
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHAHV+K G + N+L+H Y + A + S+ + ++WTT+ISG S+
Sbjct: 164 KQIHAHVLKLGFGAHVISLNNLIHMYARFQAFEEARCVLYSMPEQNFISWTTLISGYSQW 223
Query: 146 GFHKEAIDMFCGIDVKPNA--NTLV--------------------------------SVL 171
G EA +F + + +A N ++ ++L
Sbjct: 224 GLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFALFDRMRAEGVVLDKFVAATML 283
Query: 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
SAC+ LG+ + GK IH + + E + L A++D
Sbjct: 284 SACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIID 319
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q + + L+++M + + L AC+ A ++G IH ++ K
Sbjct: 245 NAMIAAYVQGNRFHESFALFDRMRAEGVVLDKFVAATMLSACTGLGALEQGKWIHGYIEK 304
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + +++ Y + A ++F + + +W +I GL+ G + AI++
Sbjct: 305 KGIEKDSKLATAIIDMYCKCGSLEKALEVFKGLPHKGISSWNCMIGGLAMHGKGEAAIEL 364
Query: 155 FCGID---VKPNANTLVSVLSACS 175
F ++ + P+ T V++LSAC+
Sbjct: 365 FKEMEKEMLAPDRITFVNLLSACA 388
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ H+ +I+ G D + L++F +D+ A ++F+S+ PD + TII +
Sbjct: 62 QYHSQIIRLGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYNTIIKAYLQ 121
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+I ++ + V PN T SV+ AC +LGK IHAH L+
Sbjct: 122 HLSPTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLK 172
>gi|356547105|ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 477
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLY-NKMLNCPSSYNHYTFTQALKACSLAHAH 82
Q P + NTL++ + P + I ++ N+ ++ YT+ L AC+ + +
Sbjct: 66 QYFDKPDLFLFNTLIRCVQ----PNDCILIFQNEFSRGLMYFDEYTYNFVLGACARSPSA 121
Query: 83 QK---GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G ++HA ++K+G +I + + ++FY + KDI SA ++F+ + VTW +I
Sbjct: 122 STLWVGRQLHARIVKHGFESNILVPTTKIYFYASNKDIISARRVFDEMPRRSTVTWNAMI 181
Query: 140 SGLS--KCGFHKEA-------IDMFCGIDV-KPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+G S K G K A IDM + V KP T+VSVLSA S +G + G IH
Sbjct: 182 TGYSSQKEGNKKYALNALSLFIDMLVDVSVIKPTGTTIVSVLSAVSQIGMLETGACIHGF 241
Query: 190 SLRNL--NENNIILDNAVLD 207
+ + + E+++ + ++D
Sbjct: 242 AEKTVCTPEDDVFIGTGLVD 261
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---C 156
D+FI L+ Y + SA +F + +++TWT + + L+ G K+A+++
Sbjct: 252 DVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNILTWTAMTTSLAIHGKGKQALEVLYKMG 311
Query: 157 GIDVKPNANTLVSVLSAC 174
VKPN T S LSAC
Sbjct: 312 AYGVKPNEATFTSFLSAC 329
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ A+ LY++ML + N T + AC+ A ++G +IH++V +
Sbjct: 495 NTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKE 554
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +D+ I +L+ Y + +A +IF+S++ DVV W +ISG G K+A+++
Sbjct: 555 MGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALEL 614
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
F G +KPN T +++LSAC G + G+ +
Sbjct: 615 FGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQL 649
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ A+ +CS + G H + IK+ D + N L+ Y A +IF
Sbjct: 426 SLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLA 485
Query: 128 VFP-DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
DVVTW T+IS + G A+ ++ + + PN+ TL++V+SAC++L + + G
Sbjct: 486 KLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERG 545
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+ IH++ + ++ ++ A++D
Sbjct: 546 EKIHSYVKEMGWDYDVSINTALID 569
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N+L++ +S A+ + +ML + + +T A A + A G +
Sbjct: 73 PDAFLWNSLIRTHHCASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASV 132
Query: 89 HAHVIKYGHLH----DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL-- 142
HA+ ++YG L + + +SL++ Y + A ++F + DVV WT ++SG
Sbjct: 133 HAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVR 192
Query: 143 -SKCG----FHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+CG + E + + +PN+ T+ S L AC L G+ +H ++++
Sbjct: 193 NGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVK 247
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G HA ++K ++ + N+L+ Y + + +A ++F + D +W +I G K
Sbjct: 339 GKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCK 398
Query: 145 CGFHKEAIDMFCGIDVKP------NANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNEN 197
G + ++++ + + +AN+LVS +S+CS L +LG++ H +S+++ L+E+
Sbjct: 399 AGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDED 458
Query: 198 NII 200
+ +
Sbjct: 459 SSV 461
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L+AC + G +H + +K G + ++L Y A +F
Sbjct: 218 NSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLF 277
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ DVV+WT++I G +EA+++F + ++P+ + +LS + G+
Sbjct: 278 PELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVH 337
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GKA HA ++ +N+++ NA++
Sbjct: 338 GGKAFHAVIMKRNFGDNVLVGNALI 362
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q + A L+ +M+ + TF L AC+ A KG E++ ++K
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ +L++ ++ DI A ++F+++ D+VTWT++I+GL++ G K+A ++
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNL 299
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F ++ V+P+ VS+L AC+ + + GK +HA
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A +NKM+ N TF L ACS A ++G +I H+I+ G+ D ++ +LL
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLS 456
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + AH++F + +VV W +I+ + + A+ F + +KPN++T
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
S+L+ C S S +LGK +H ++ E+++ + NA++
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L H KI + +++ N ++ Q NA+ + +L N TFT L
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C + + + G +H ++K G D+ + N+L+ +V D+ SA +FN + D+V+W
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
TII+G + G ++ A D F + +KP+ T +L+AC+S + G+ +HA
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q Q A + M + TFT L AC+ A +G +HA + +
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ + L+ Y I AHQ+F+ + +V +WT++I+G ++ G KEA+++
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALEL 703
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
F + VKP+ T V LSAC+ G + G H +++ E NI
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEG----LHHFQSMKEFNI 747
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A L+ +M + F L+AC+ A ++G ++HA + + G +I++ ++
Sbjct: 294 KQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAI 353
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
L Y + A ++F+ V +VV+WT +I+G ++ G EA F + ++PN
Sbjct: 354 LSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNR 413
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAH 189
T +S+L ACSS + K G+ I H
Sbjct: 414 VTFMSILGACSSPSALKRGQQIQDH 438
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 87/176 (49%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L L+++ A+ + ++ + T++ L+ C G I+ H+ K
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DIF+ N+L++ Y + SA QIF+ + DV +W ++ G + G ++EA +
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ VKP+ T VS+L+AC+ + G+ ++ L+ + ++ + A+++
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALIN 254
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N LL Q + A L+ +M+ + TF L AC+ A KG E++ ++K
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ +L++ ++ DI A ++F+++ D+VTWT++I+GL++ G K+A ++
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNL 299
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F ++ V+P+ VS+L AC+ + + GK +HA
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A +NKM+ N TF L ACS A ++G +I H+I+ G+ D ++ +LL
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLS 456
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + AH++F + +VV W +I+ + + A+ F + +KPN++T
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
S+L+ C S S +LGK +H ++ E+++ + NA++
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L H KI + +++ N ++ Q NA+ + +L N TFT L
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C + + + G +H ++K G D+ + N+L+ +V D+ SA +FN + D+V+W
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
TII+G + G ++ A D F + +KP+ T +L+AC+S + G+ +HA
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q Q A + M + TFT L AC+ A +G +HA + +
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ + L+ Y I AHQ+F+ + +V +WT++I+G ++ G KEA+++
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALEL 703
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
F + VKP+ T V LSAC+ G + G H +++ E NI
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEG----LHHFQSMKEFNI 747
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A L+ +M + F L+AC+ A ++G ++HA + + G +I++ ++
Sbjct: 294 KQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAI 353
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
L Y + A ++F+ V +VV+WT +I+G ++ G EA F + ++PN
Sbjct: 354 LSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNR 413
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAH 189
T +S+L ACSS + K G+ I H
Sbjct: 414 VTFMSILGACSSPSALKRGQQIQDH 438
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L L+++ A+ + ++ + T++ L+ C G I+ H+ K
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DIF++N+L++ Y + SA QIF+ + DV +W ++ G + G ++EA +
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ VKP+ T VS+L+AC+ + G+ ++ L+ + ++ + A+++
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALIN 254
>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI + +ML N T + L A + +GL+IH V+K G D+ IQNSL
Sbjct: 481 EEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSL 540
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ HQIF S+ P++V++ ++I+G ++ GF +EA+++F + KPN
Sbjct: 541 VSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNE 600
Query: 165 NTLVSVLSACSSLG 178
T + VLSAC+ +G
Sbjct: 601 ITFLGVLSACTHVG 614
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 65/207 (31%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T T +ACS +++G+++H V + G D+F+ N+++ Y + A +IF
Sbjct: 335 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 394
Query: 125 NS--------------------------VVF-----PDVVTWTTIISGLSKCGFHKEAID 153
+ V+F DV++WTT+I+G S G ++I+
Sbjct: 395 DMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIE 454
Query: 154 MFCGID----------------------------------VKPNANTLVSVLSACSSLGS 179
+F + V+PN TL SVLSA + L +
Sbjct: 455 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 514
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
G IH ++ E ++ + N+++
Sbjct: 515 LNQGLQIHTLVVKMGMEFDLSIQNSLV 541
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+ +S++ Y I A ++F + +VVTWT +I G K G ++ +F +
Sbjct: 268 DVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMR 327
Query: 160 ----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
VK N TL + ACS G K G +H R E ++ L NA++
Sbjct: 328 KEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAII 378
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H I P+I+ N+++ Q+ + A+ L++KMLN N TF L AC+
Sbjct: 554 HQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACT-- 611
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
H +++ G +++ ++K ++ + P + I+
Sbjct: 612 ---------HVGLLEQG-----------WNYFKSMKSLYQ--------IEPGPHHYACIV 643
Query: 140 SGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSA 173
L + GF +AID+ + +P++ ++L A
Sbjct: 644 DLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGA 677
>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI + +ML N T + L A + +GL+IH V+K G D+ IQNSL
Sbjct: 402 EEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSL 461
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y ++ HQIF S+ P++V++ ++I+G ++ GF +EA+++F + KPN
Sbjct: 462 VSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNE 521
Query: 165 NTLVSVLSACSSLG 178
T + VLSAC+ +G
Sbjct: 522 ITFLGVLSACTHVG 535
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 65/207 (31%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T T +ACS +++G+++H V + G D+F+ N+++ Y + A +IF
Sbjct: 256 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 315
Query: 125 NS--------------------------VVF-----PDVVTWTTIISGLSKCGFHKEAID 153
+ V+F DV++WTT+I+G S G ++I+
Sbjct: 316 DMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIE 375
Query: 154 MFCGID----------------------------------VKPNANTLVSVLSACSSLGS 179
+F + V+PN TL SVLSA + L +
Sbjct: 376 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 435
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
G IH ++ E ++ + N+++
Sbjct: 436 LNQGLQIHTLVVKMGMEFDLSIQNSLV 462
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+ +S++ Y I A ++F + +VVTWT +I G K G ++ +F +
Sbjct: 189 DVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMR 248
Query: 160 ----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
VK N TL + ACS G K G +H R E ++ L NA++
Sbjct: 249 KEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAII 299
Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 22 HAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H I P+I+ N+++ Q+ + A+ L++KMLN N TF L AC+
Sbjct: 475 HQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACT-- 532
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
H +++ G +++ ++K ++ + P + I+
Sbjct: 533 ---------HVGLLEQG-----------WNYFKSMKSLYQ--------IEPGPHHYACIV 564
Query: 140 SGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSA 173
L + GF +AID+ + +P++ ++L A
Sbjct: 565 DLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGA 598
>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 520
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 95/187 (50%), Gaps = 5/187 (2%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ + NT++ Q + A+ ++ KM + N T T + +C+ ++
Sbjct: 90 EMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGFEPNSVTLTTVISSCARLLDLER 149
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G EIH V++ G + D F+ ++L+ Y + A IF + +V W ++I+G S
Sbjct: 150 GKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAGYSS 209
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
KE I++F +++ KP TL S+L ACS + G+ IH +++RN + +I +
Sbjct: 210 AADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIFV 269
Query: 202 DNAVLDF 208
+ +++
Sbjct: 270 SSGLIEL 276
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + ++ + I L+ +M + T + L ACS A Q G IH + ++
Sbjct: 201 NSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVR 260
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF+ + L+ Y + SA IF + +VV W +ISG G + +A+DM
Sbjct: 261 NRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDM 320
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + VKP+A T S+LSACS L + + GK IH +N E N I+ A+LD
Sbjct: 321 YDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEIVMGALLD 376
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 42 TQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
T++ A+ L++++L P + +T+ LKAC + G IH H+IK G + D
Sbjct: 5 TKNCMYTEALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSGFVFD 64
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
I + +SL+ + A Q+F+ + DV W T+IS + G ++A++MF +
Sbjct: 65 IVVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRD 124
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+PN+ TL +V+S+C+ L + GK IH R + +N ++LD V
Sbjct: 125 SGFEPNSVTLTTVISSCARLLDLERGKEIH----REVMQNGMVLDGFV 168
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ +Y++M + TF+ L ACS A +KG EIH + K + + +LL
Sbjct: 316 KALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEIVMGALL 375
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y + A +FN + D+++WT+IIS G EA+ +F + P+A
Sbjct: 376 DMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQSKASPDAV 435
Query: 166 TLVSVLSACSSLG 178
T ++VLSACS G
Sbjct: 436 TFLAVLSACSHAG 448
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T + + A+ L+ KM N T L C L + G +H IK G + D
Sbjct: 319 THNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVG-IWDT 377
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
+ N+L+H Y A +F D+V W +IISG S+ G EA+ +F ++
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR--NLNENNIILDNAVLDF 208
V PN T+ S+ SAC+SLGS +G ++HA+S++ L +++ + A+LDF
Sbjct: 438 SVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDF 489
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + L+N+M N YT+ + AC+ A +G H ++K G + SL
Sbjct: 224 EEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSL 283
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNA 164
L YV DI +A ++FN D+V WT +I G + G EA+ +F G+++KPN
Sbjct: 284 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNC 343
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T+ SVLS C + + +LG+++H S++
Sbjct: 344 VTIASVLSGCGLIENLELGRSVHGLSIK 371
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 6/186 (3%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P ++ +L+ + + LY+ ++ Y+ F++ALKAC+
Sbjct: 101 QIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDN 160
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++K ++ + LL Y +I SAH++FN + +VV WT++I+G K
Sbjct: 161 GKKIHCQLVKVPSFDNVVL-TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVK 219
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+E + +F + +V N T +++ AC+ L + GK H +++ E + L
Sbjct: 220 NDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCL 279
Query: 202 DNAVLD 207
++LD
Sbjct: 280 VTSLLD 285
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ + A+ L+++M + + N T AC+ + G +HA+ +K
Sbjct: 412 NSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVK 471
Query: 95 YGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G L + + +LL FY D SA IF+++ + +TW+ +I G K G ++
Sbjct: 472 LGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSL 531
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
++F + KPN +T S+LSAC G GK + ++ N
Sbjct: 532 ELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYN 577
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + P AI +M N TFT L AC+ G EIHA ++
Sbjct: 283 NAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVR 342
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ NSL+ Y + SA +FN+ D V++ +I G S+ +++++
Sbjct: 343 IGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNL 401
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + + KP+ + V V+SAC++L + K GK +H +LRN +++ + N++LDF
Sbjct: 402 FSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDF 458
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TF LK CS + KG+E+H V K G D+++ N+LL Y + A ++F
Sbjct: 9 DDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLF 68
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAID----MFCGIDVKPNANTLVSVLSACSSLGSR 180
+ + DVV+W TII LS G + EA + M +KPN +++S+L ++L
Sbjct: 69 DEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDE 128
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
++ + IH +S++ ++ + NA++D
Sbjct: 129 EMTRRIHCYSVKVGLDSQVTTCNALVD 155
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L +A+ + M++ + N T + L + G EIH ++
Sbjct: 182 NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMR 241
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DIFI NSL+ Y A IF+++ ++V+W +I+ + EAI
Sbjct: 242 MGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRF 301
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ PNA T +VL AC+ LG GK IHA +R +++ + N+++D
Sbjct: 302 VIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLID 357
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ +++ ++ L+++M + +F + AC+ A ++G E+H ++
Sbjct: 383 NILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALR 442
Query: 95 ---YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
Y HL F+ NSLL FY I A ++FN ++F DV +W T+I G G + A
Sbjct: 443 NHLYSHL---FVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETA 499
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLG 178
I MF + V+ + + ++VLSACS G
Sbjct: 500 ISMFEAMRDDTVQYDLVSYIAVLSACSHGG 529
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS---K 144
IH + +K G + N+L+ Y + + Q+FN V + V+W +II+GL+ +
Sbjct: 134 IHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGR 193
Query: 145 CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
C A M +PN+ T+ S+L L K GK IH S+R E +I + N+
Sbjct: 194 CWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANS 253
Query: 205 VLD 207
++D
Sbjct: 254 LID 256
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 118/264 (44%), Gaps = 75/264 (28%)
Query: 14 SFKQLNQIHAQIIK---------------------------------IPQPHIL--NTLL 38
SF+Q+ Q+HA++I PQP + NT++
Sbjct: 13 SFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTII 72
Query: 39 KLLTQSSTPQ-NAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
K+L S+T ++ + ++ N Y+F A K C +G ++ H IK G
Sbjct: 73 KVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLG 132
Query: 97 HLHDIFIQNSLLHFYVTV---------------KDIFS----------------AHQIFN 125
+++F+ N+L+ YV + +D++S A Q+F+
Sbjct: 133 LENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFD 192
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKL 182
+ DVV+WTT+ISG + G+ EA+D+F + K PN TL S L+AC++L +
Sbjct: 193 EMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQ 252
Query: 183 GKAIHAHSLRNLNENNIILDNAVL 206
G+ +H + + +NNI ++ +L
Sbjct: 253 GRWMHVY----IKKNNIQMNERLL 272
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
++++ ++P+ +++ T++ Q A+ +++ ML S N YT +L
Sbjct: 183 KMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLA 242
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS--VVFPDV 132
AC+ A +G +H ++ K + + L+ Y ++ A ++FNS + V
Sbjct: 243 ACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKV 302
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 175
W +I G + G KEAI++F + ++ PN T V++L+ACS
Sbjct: 303 WPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACS 348
>gi|413948598|gb|AFW81247.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 788
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 9/184 (4%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY----NHYTFTQALKACSLAHAHQKGLEI 88
+ TL+ Q+ + AI + +ML SS N YTF+ + AC G ++
Sbjct: 223 VCTTLIASYVQTGRTEEAIEAFVRMLRDESSNSASPNEYTFSAVIAACPNMDRAYLGEQL 282
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA + G H + NSL+ Y + +A IF V DVV+W+TIISG ++ G
Sbjct: 283 HAQAARRGLSHARSVANSLVKLYSRRGHLSAADAIFRESVVKDVVSWSTIISGYTQEGLA 342
Query: 149 KEAIDMFCGID-----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+E+ +F + +PN TL S+ S C+S S G+ +HA ++ E++ ++ +
Sbjct: 343 EESFALFSEMRHHSSCPRPNEFTLASLFSVCASAASLDTGRQLHALAVAAGLEHHAMVRS 402
Query: 204 AVLD 207
A+++
Sbjct: 403 ALVN 406
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML---NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+T++ TQ + + L+++M +CP N +T C+ A + G ++HA
Sbjct: 330 STIISGYTQEGLAEESFALFSEMRHHSSCPRP-NEFTLASLFSVCASAASLDTGRQLHAL 388
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ G H ++++L++ Y + A+ +F++ DV++WT +I G ++ G KEA
Sbjct: 389 AVAAGLEHHAMVRSALVNMYGKGGSMSDANVVFSNRTKDDVISWTAMIVGHAEHGHSKEA 448
Query: 152 IDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++F C I +KP+ T + VL+ACS G +LG LR LN N
Sbjct: 449 FELFEEMCRIGLKPDHVTFIGVLTACSHAGELELG-------LRYLNAMN 491
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL+ L ++ +A+ + +M + + + + AL AC+ A +G E+HA K
Sbjct: 125 TLVASLARAGRRHDALRRFAEMRASGVACDSHACSAALTACADAGLLPRGREVHALCAKL 184
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G F+ N+L Y D+ A + DV TT+I+ + G +EAI+ F
Sbjct: 185 GLDAVPFVANALAALYARCGDVDRALAAVGRMGSHDVAVCTTLIASYVQTGRTEEAIEAF 244
Query: 156 CGI-------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ PN T +V++AC ++ LG+ +HA + R
Sbjct: 245 VRMLRDESSNSASPNEYTFSAVIAACPNMDRAYLGEQLHAQAAR 288
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++ L +F+ +L Y + A Q+ + + +VV+WTT+++ L++ G +A+
Sbjct: 81 VRSSSLPSVFVSTALADAYAKAGRLDLALQVLDEMPSRNVVSWTTLVASLARAGRRHDAL 140
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + V +++ + L+AC+ G G+ +HA
Sbjct: 141 RRFAEMRASGVACDSHACSAALTACADAGLLPRGREVHA 179
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 12 TLSFKQLNQIHAQIIK----------IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLN 59
T S+ L HA++ + IP P N ++ L Q S +A+ M
Sbjct: 826 TFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHA 885
Query: 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119
N Y+F AL AC+ + G+++HA V K H D++I ++LL Y +
Sbjct: 886 DDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEE 945
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A ++F ++ ++V+W ++I+ + G EA+ +F + P+ TL SV+SAC+
Sbjct: 946 ARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAG 1005
Query: 177 LGSRKLGKAIHAHSLRNLN-ENNIILDNAVLD 207
L + + G+ +HA +++ +++L NA++D
Sbjct: 1006 LAADREGRQVHARVVKSDRFREDMVLSNALVD 1037
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q+ + A+ L+ ++ HYT+ L AC Q G + H HV+K
Sbjct: 1095 NVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLK 1154
Query: 95 ------YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
+G D+F+ NSL+ Y+ I ++F + D V+W +I G ++ G
Sbjct: 1155 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRA 1214
Query: 149 KEAIDMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
K+A+ +F C + P++ T++ VLSAC G + G+ R++ E++ I+
Sbjct: 1215 KDALHLFERMLCSKE-SPDSVTMIGVLSACGHSGLVEEGR----RYFRSMTEDHGII 1266
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 34/191 (17%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ +ML+ YT + A+ AC +A ++G IHA V+++G+ H + +++S++
Sbjct: 236 AVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVD 295
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP------- 162
Y + +A +FN D+V T+I+SGL+ CG +A +F G+ +
Sbjct: 296 MYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAM 355
Query: 163 ---------------------------NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+A TL SVLSAC+ + G+ +HA +++
Sbjct: 356 LTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGF 415
Query: 196 ENNIILDNAVL 206
++ IL NA++
Sbjct: 416 FSSPILKNALV 426
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L +S A+ L+ +M ++ T L AC+ KG E+HA IK
Sbjct: 353 NAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIK 412
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQI--FNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G ++N+L+ Y + SA ++ F D +W ++ISG + + A+
Sbjct: 413 CGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAAL 472
Query: 153 DMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +V PN +T S L+AC+++ K G IHA+ +R E + IL + ++D
Sbjct: 473 YALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLID 529
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + S + A+ KM + N TF+ AL AC+ ++G++IHA++I+
Sbjct: 456 NSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIR 514
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D +++ L+ Y + + +IF + DV+ W ++I G + G + +D+
Sbjct: 515 KGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDL 574
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKA 185
F + +K ++ T + L +C S G +LG++
Sbjct: 575 FDEMQKQGIKADSVTFLGALVSCISEGHVRLGRS 608
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 43/223 (19%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I+ N+L+ Q+ A+ L+ M+ + T + AC+ A ++G
Sbjct: 953 MPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREG 1012
Query: 86 LEIHAHVIKYGHL-HDIFIQNSLLHFYVTV------------------------------ 114
++HA V+K D+ + N+L+ Y
Sbjct: 1013 RQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYAR 1072
Query: 115 -KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 170
++ A +F+ +V +V+ W +I+ ++ G +EA+ +F + V P T +V
Sbjct: 1073 SANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNV 1132
Query: 171 LSACSSLGSRKLGKAIHAHSLRN------LNENNIILDNAVLD 207
L+AC ++ +LG+ H H L+ E+++ + N+++D
Sbjct: 1133 LNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVD 1175
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +++ P A+ L++ M + T L C+ ++H H+ K
Sbjct: 120 NAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAK 179
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ + +L+ Y + A + F+ ++ P+ ++W I+ G A+DM
Sbjct: 180 RDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDM 239
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F V+P T+ + AC + + G+ IHA LR+ E+++ + ++V+D
Sbjct: 240 FFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVD 295
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
F+ N + + A ++F+ + D +W II+ S+ G EA+ +F ++
Sbjct: 86 FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++P T+ SVLS C+ + +H H + ++N+IL A++D
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVD 194
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
P N+++ S P+ A+ LY M TF+ ACS + Q+G +HA
Sbjct: 432 PVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHA 491
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
H+IK ++++ SL+ Y I A F S+ P+V WT +I+G + G E
Sbjct: 492 HLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSE 551
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
AI +F + + PN T V VLSACS G G I HS+
Sbjct: 552 AISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIF-HSM 594
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 44/223 (19%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ ++ NT++ ++ A+ L M + TF+ L C+ +
Sbjct: 97 QMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRD 156
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---------------- 128
G IH V+K G + ++LL+FY + +I A ++F+ +V
Sbjct: 157 GKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVT 216
Query: 129 -------------FP--DVVTWTTIISGLSK----CGFHKEAIDMFCGI----DVKPNAN 165
P DVV WTT+ISG SK CG +A++MF + + PN
Sbjct: 217 CNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCG---KALEMFRLMMRSGETTPNEF 273
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T V+ AC LG +G+ +H ++ E + + A+++F
Sbjct: 274 TFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEF 316
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAIDMFCG-- 157
IF N+++ Y +I A ++F D VTW ++ISG G +EA+ ++
Sbjct: 400 IFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMH 459
Query: 158 -IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ ++ +T ++ ACS LGS + G+ +HAH ++ E+N+ + +++D
Sbjct: 460 RLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLID 510
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
S A HQ+ E + +L +I N + Y + A Q+F+ + VV+W
Sbjct: 48 SKAWKHQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWN 107
Query: 137 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T+IS SK G EA+ + + +K + +T SVLS C+ L + GK IH L++
Sbjct: 108 TMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKS 167
Query: 194 LNENNIILDNAVLDF 208
+E+ ++ +A+L F
Sbjct: 168 GSESFELVGSALLYF 182
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116
M + ++ N +TF ++AC G +H ++K G +D I +L+ FY +
Sbjct: 263 MRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEA 322
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
I A ++ VV P + ++I GL G ++A +F G+
Sbjct: 323 IDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM 364
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+ +YN+M+ + +TF LKAC+ A +KG E+H V+K G D+F+ N+LL
Sbjct: 25 GLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGXVVKLGFESDVFVGNTLLS 84
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNAN 165
FY + A ++F+ + D+V+W T+I S G E +D+F + ++PN
Sbjct: 85 FYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGCWXEVLDLFGEMRLRSGLRPNVV 144
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++VSVL C+ + IH + ++ E +I+ NA+LD
Sbjct: 145 SVVSVLPVCAGVEDEVTASEIHGYVVKVGLEFQVIVGNALLD 186
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ L +M + N TFT L AC+ + G EIHA I
Sbjct: 314 NAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIH 373
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ N+L Y + A +F++ + D V++ +I G S+ E++ +
Sbjct: 374 MGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL-RDEVSYNILIVGXSQTSDCSESLSL 432
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + +K + + + LSAC++L + K GK IH LR L ++ + N++LDF
Sbjct: 433 FSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDF 489
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT++ + + + + L+ +M L N + L C+ EIH +V+
Sbjct: 111 NTMIGVFSVNGCWXEVLDLFGEMRLRSGLRPNVVSVVSVLPVCAGVEDEVTASEIHGYVV 170
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + + N+LL Y ++ + Q+F +V ++V+W II+ G +++A+D
Sbjct: 171 KVGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMVEKNLVSWNAIITSFGYKGHYRDALD 230
Query: 154 MF-CGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
MF ID +KPN+ T+ S L L K G+ +H S+R E++I + N+++D
Sbjct: 231 MFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLID 287
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI- 93
N L+ +Q+S ++ L+++M ++ +F AL AC+ A ++G EIH ++
Sbjct: 414 NILIVGXSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLR 473
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K H+H +F+ NSLL FY I A IF+ + DV +W T+I G G AID
Sbjct: 474 KLFHIH-LFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAID 532
Query: 154 MFC----GIDVKPNAN-TLVSVLSACS 175
+ DV+ + + + ++VLSACS
Sbjct: 533 LLTENMRKDDVESDDSVSFIAVLSACS 559
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ ++ M++ N T + L + G E+H I+ G DIFI NSL
Sbjct: 226 RDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSL 285
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y A +F + +VV+W +I+ ++ F A+ + + PN+
Sbjct: 286 IDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNS 345
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T +VL AC+ +G + GK IHA S+ ++ + NA+ D
Sbjct: 346 VTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTD 388
Score = 37.0 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 135 WTTIISGLSKCGFHK--EAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
W T+I G S G E + I V+P+ +T VL AC+ + G+ +H ++
Sbjct: 10 WNTLIRGYSIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGXVVK 69
Query: 193 NLNENNIILDNAVLDF 208
E+++ + N +L F
Sbjct: 70 LGFESDVFVGNTLLSF 85
>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 788
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ +LN P +++T + + A L ++ ++H+++I+ G+ + I N+++H
Sbjct: 397 AITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMH 456
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y D+ S+ +IF+ + DV++W T+I G + G + A++MF + ++PN +T
Sbjct: 457 MYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNEST 516
Query: 167 LVSVLSACSSLG 178
VSVL+ACS G
Sbjct: 517 FVSVLTACSVSG 528
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC L A +G E+HA+VI++G HD+ + S+L Y DI SA +F ++
Sbjct: 217 ALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRT 276
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVSVLSACSSLGSRKLGKAI 186
VVTW +I G + +EA D C + +K + T +++L+AC+ S G+++
Sbjct: 277 VVTWNCMIGGYALNERPEEAFD--CFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSV 334
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H + R +++L+ A+L+
Sbjct: 335 HGYITRRQFLPHVVLETALLE 355
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQI 123
+ +TF LK C+ A +G H+ I+ G D++ NSLL FY + + A ++
Sbjct: 107 DRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERV 166
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGS 179
F+ + DVVTW +++ G G A+ +M ++V+ + +++ L+AC +
Sbjct: 167 FDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESA 226
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +HA+ +R+ E+++ + ++LD
Sbjct: 227 LMQGREVHAYVIRHGMEHDVKVGTSILD 254
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ A + +M T L AC+ + G +H ++ + L + ++ +
Sbjct: 293 PEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETA 352
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
LL Y V + S+ ++F + +V+W +I+ + EAI +F + + P+
Sbjct: 353 LLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPD 412
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVL 206
T+ +V+ A LG + + +H++ +R EN +I+ NA++
Sbjct: 413 YFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIM-NAIM 455
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N + AL+AC+ + A + G ++H K G ++F+ +L++ Y I +A +F
Sbjct: 136 NEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVF 195
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--CGID-VKPNANTLVSVLSACSSLGSRK 181
+++ + VTWT +I+G S+ G A+++F G+D V+P+ L S SACS LG +
Sbjct: 196 DALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVE 255
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IH ++ R E++ + NA++D
Sbjct: 256 GGRQIHGYAYRTAAESDASVVNALIDL 282
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I N ++ L Q+ + A+ L+ ++ + N +TF + S + G + HA +
Sbjct: 508 IWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQI 567
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK G D I N+L+ Y I +F S + DV+ W ++IS ++ G +EA+
Sbjct: 568 IKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEAL 627
Query: 153 DMFC---GIDVKPNANTLVSVLSACSSLG 178
+F G V+PN T VSVLSAC+ G
Sbjct: 628 HVFGMMEGAGVEPNYVTFVSVLSACAHAG 656
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ A+ L+ +M + + A ACS + G +IH + + D
Sbjct: 214 SQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDA 273
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV- 160
+ N+L+ Y + A ++F+S+ ++V+WTT+I+G + EA+ MF +
Sbjct: 274 SVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQA 333
Query: 161 --KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+P+ S+L++C SL + G+ +HAH ++ E++ + NA++D
Sbjct: 334 GWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALID 382
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+S A+ ++ ++ + + T L +C A +G ++HAHVIK
Sbjct: 309 TMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKA 368
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D +++N+L+ Y + + A +F ++ D +++ +I G ++ G A+++F
Sbjct: 369 DLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIF 428
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +KP+ T VS+L SS +L K IH +++ ++ +A++D
Sbjct: 429 GKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALID 483
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ KM C + TF L S + +IH ++K G D++ ++L+
Sbjct: 424 AVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALID 483
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANT 166
Y + A +F+ + D+V W +I GL++ +EA+ +F + V PN T
Sbjct: 484 VYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFT 543
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V++++ S+L S G+ HA ++ +++ + NA++D
Sbjct: 544 FVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALID 584
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA + G L D+F+ N LL Y + + A ++F+S+ ++V+W + IS ++ G
Sbjct: 53 HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112
Query: 149 KEAIDMFCGIDVK---------PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+A+ +F PN L S L AC+ + + G+ +H + + + N+
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172
Query: 200 ILDNAVLDF 208
+ A+++
Sbjct: 173 FVGTALVNL 181
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L TQ++ + A+ +Y++M+ + T AL + + G+E+H +
Sbjct: 256 NAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVA 315
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G+ +I +QN+L+ Y ++ +A ++F+ V DVV+WT +I ++ G ++EA+++
Sbjct: 316 HGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALEL 375
Query: 155 FC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ G ++P+ T SVLSACS+ +LG+A+HA L
Sbjct: 376 YKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLL 415
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IHAH++ G D F+ + LL Y + A Q+F+S+ + +W II+ +
Sbjct: 4 QGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFA 63
Query: 144 KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
K ++AI+MF +D +KP++ TL SVL ACSSL + GK IH+ +L ++II
Sbjct: 64 KNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSII 123
Query: 201 LDNAVL 206
+ NA++
Sbjct: 124 VQNALV 129
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 87/173 (50%), Gaps = 1/173 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + AI ++ M + + T + L ACS ++G +IH+ +
Sbjct: 56 NFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALA 115
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G I +QN+L+ Y + A +F+ + VV+W +I+ ++ G ++A+ +
Sbjct: 116 RGLSSSIIVQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQL 175
Query: 155 FCGIDVKPNANTLVSVLSACSSL-GSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F ++++PN T SV +ACS L R++GK IH + E N+ + A++
Sbjct: 176 FKRMELEPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIV 228
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI-KY 95
L+ TQ + A+ LY +M + TFT L ACS + G +HA ++ +
Sbjct: 359 LIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARK 418
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDM 154
D + +L++ YV + + +IF S VV W +I+ + G+ + A+D+
Sbjct: 419 DGFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDL 478
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL--RNLNENNIILD 202
+ G+D P+ +TL S+LSAC+ L + G+ +H + R+ ++N ++L+
Sbjct: 479 YDMMKQRGLD--PDESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNPVVLN 531
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK-GLEIHAHVI 93
N ++ + + A+ L+ +M P N TF ACSL H++ G IH I
Sbjct: 157 NAMIAACARQGEAEQALQLFKRMELEP---NEVTFASVFNACSLLPDHREVGKRIHDR-I 212
Query: 94 KYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ HL ++ + +++ Y + A Q+FN + +VV+W ++ ++ +EA+
Sbjct: 213 RGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDREAL 272
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+++ V+ + T+V L +SL KLG +H S+ + ++NI + NA++
Sbjct: 273 EVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSNIKVQNALI 329
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N ++ Q + A+ LY+ M + T + L AC+ +KG ++H +
Sbjct: 458 VWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEI 517
Query: 93 IKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
I + + N+L+ Y + +I A +F + DVV+WT +IS + G + A
Sbjct: 518 IASRDCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRA 577
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ ++ + V+P T + V AC G
Sbjct: 578 LRLYRRMLVEGVQPTEPTFLCVFLACGHAG 607
>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
Length = 590
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 43/222 (19%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++ + +L N +L ++ +PQ I Y+ M P N T+T L ACS +
Sbjct: 203 RVEKRDVLCWNFMLSAYSERGSPQQVIEAYDAMDVEP---NAVTYTNVLIACSAMEDLAQ 259
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----------------- 127
G ++H+ ++ G D+ ++ SLL Y+ + + SA Q+F ++
Sbjct: 260 GQKVHSRIVSSGLETDMTMETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDTALLNMY 319
Query: 128 -----------VFP-------DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
VF DVV WT +I+ ++ G +EA+ ++ + ++KPN+ T
Sbjct: 320 AACGNLEAAKRVFGSRRDERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVT 379
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
SVLSACSSLG+ G+ IH+ E ++ + N++L
Sbjct: 380 YTSVLSACSSLGNILEGRKIHSSLEGKAEELDVAVQNSLLSL 421
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ Q+ A L+ +M + N T L ACS + G ++HA++
Sbjct: 12 MIGAYAQNGRRNEAFLLFERMESEGIRPNAVTCLHVLGACSCQNELPFGKKVHAYISASE 71
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF- 155
DI +Q SL++ Y ++ A ++FN + DV++W+T+IS ++ G H EAI+++
Sbjct: 72 FKWDISLQTSLVNMYAKCGNLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYR 131
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+PNA T V V+ AC+ G G+ +H + E ++ + +A++
Sbjct: 132 LMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLETDVAVGSALVQL 187
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 1/175 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+T++ QS AI +Y M + S N TF + AC+ +G ++H ++
Sbjct: 111 STMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLV 170
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D+ + ++L+ YV ++ A + F+ V DV+ W ++S S+ G ++ I+
Sbjct: 171 SLGLETDVAVGSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIE 230
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +DV+PNA T +VL ACS++ G+ +H+ + + E ++ ++ ++L
Sbjct: 231 AYDAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETSLLSL 285
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q+ + A+ LY ML+ N T+T L ACS +G +IH+ + D+
Sbjct: 353 AQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSSLEGKAEELDV 412
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM-----FC 156
+QNSLL Y + A F + DV +WT +++ + G A+++ C
Sbjct: 413 AVQNSLLSLYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVREMELC 472
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKA 185
G V P+A T SVL ACS GS + G A
Sbjct: 473 G--VSPDAVTFQSVLHACSHEGSLERGWA 499
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 27 KIPQPHI--LNTLLKLLTQSSTPQNAIPLYN--KMLNCPSSYNHYTFTQALKACSLAHAH 82
KIPQP + L+ LT+ AI YN + NC + KAC+
Sbjct: 36 KIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP-DKLLLLSVAKACASLRDV 94
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+H I++G D+ + N+L+ Y + A +F + F DV++WT++ S
Sbjct: 95 MNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCY 154
Query: 143 SKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
CG +EA+ F + + +PN+ T+ S+L AC+ L K G+ +H +RN N+
Sbjct: 155 VNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNV 214
Query: 200 ILDNAVLD 207
+ +A+++
Sbjct: 215 FVSSALVN 222
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ + A+ + ++M N N T T L AC+ + + G +IH ++ +
Sbjct: 284 NAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFR 343
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D+ +L+ Y D+ + ++F+ + D V+W T+I S G +EA+ +
Sbjct: 344 HWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLL 403
Query: 155 FCGI---DVKPNANTLVSVLSACS 175
F + V+PN+ T VLS CS
Sbjct: 404 FREMVDSGVRPNSVTFTGVLSGCS 427
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 38/167 (22%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + L AC+ + G E+H V++ G ++F+ ++L++ Y + I A +F
Sbjct: 178 NSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVF 237
Query: 125 NSVVFPDVVTWTTIIS----------GLS-------------------------KCGFHK 149
+S+ D V+W +I+ GLS + G +
Sbjct: 238 DSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTE 297
Query: 150 EAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+A+++ + KPN T+ SVL AC++L S + GK IH + R+
Sbjct: 298 KALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRH 344
>gi|357131027|ref|XP_003567145.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 487
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 6 LKSLKPTLS-FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
L+ L P LS F L++ H + N++L+ L +S + +PL+ + L
Sbjct: 66 LRHLDPALSLFASLSRPHV--------FVFNSILRSLHPASG-SSPLPLFRRFLCLGVRP 116
Query: 65 NHYTF----TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFS 119
N YTF T C L +H+ V K G D+ ++N+LL Y D+
Sbjct: 117 NRYTFPLLLTSLSSLCDLR-------AVHSQVTKSGFARDLHVRNALLARYAACDPDVAH 169
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSS 176
A Q+F+ + PDVV WTT+I+ G +A+ F V PN T+V+ L AC +
Sbjct: 170 AEQLFDEMALPDVVAWTTVITSYKNRGRSFQALATFRRMLAASVAPNRVTMVAALGACGA 229
Query: 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ + G IH + + + +++L A++D
Sbjct: 230 HGAIESGTWIHEYVEKQGWDLDVVLGTALVDM 261
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ + +ML + N T AL AC A + G IH +V K G D+ + +L+
Sbjct: 200 QALATFRRMLAASVAPNRVTMVAALGACGAHGAIESGTWIHEYVEKQGWDLDVVLGTALV 259
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y + A ++F +V +V TW II L A+ F ++ V+P+A
Sbjct: 260 DMYGKCGHVAEAARLFTEMVERNVYTWNAIIGALVLAQDSTRALQWFYRMEADGVQPDAV 319
Query: 166 TLVSVLSACSSLGSRKLGKAI 186
TL+ L AC+ G G+ I
Sbjct: 320 TLICALCACAHAGFVDTGRKI 340
>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 562
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L++ + +A+ L++ ML +H+TF ALKAC IHA +IK
Sbjct: 184 NSLMRGFVEREHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIK 243
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS-KCGFHKEAID 153
G+ + SL+ Y + + SA I++S+ PD+V+ T +ISG S + +A+
Sbjct: 244 LGYWDENVAIASLIDSYAKCRSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDAMK 303
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+FC I ++ +A L S+L C+++ S K G IHA+ + ++ LDNA++D
Sbjct: 304 LFCKIHRKGLRIDAILLSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDM 361
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
++S PQ A+ L+ ML + N +TF A++AC+ A + G +IHA K D+
Sbjct: 90 AKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDM 149
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
F+Q++L+ ++ + A ++F + D+V+W +++ G + +A+ +F +
Sbjct: 150 FVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFDSMLRD 209
Query: 159 DVKPNANTLVSVLSACSSL 177
+ P+ T S L AC ++
Sbjct: 210 GMLPDHFTFGSALKACGAI 228
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L C+ + + G +IHA++ K + D+ + N+L+ Y + + + F+ + +V
Sbjct: 324 LGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEMPNRNV 383
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
++WT++I+ ++ GF ++A+ +F ++ VKPN T +S+LSACS G
Sbjct: 384 ISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSG 432
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH--AHVIKYGHL 98
++ ++ P++A LY+ +L A+A ++G +H A +
Sbjct: 1 MSLANAPKSAAALYSSLLQSSMG---------------ANAFRQGKSVHHRAIITSSASP 45
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
D+ + L+ FY D+ +A ++F+ + VV+WT ++SG +K +EA+D+F +
Sbjct: 46 PDLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSGYAKNSRPQEALDLFAFM 105
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+PN T S + AC+ + G+ IHA + + ++ + +A++D
Sbjct: 106 LRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDMFVQSALMDM 158
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 103/188 (54%), Gaps = 8/188 (4%)
Query: 28 IPQPHI-----LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+P H+ N++L L +S + A+ + +M++ +++H T+ + C+
Sbjct: 178 VPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDL 237
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
Q GL +HA +++ G + D F+ + L+ Y ++ +A +F+ + +VV WT +++
Sbjct: 238 QLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAY 297
Query: 143 SKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+ G+ +E++++F +D + PN T +L+AC+ + + + G +HA + +N++
Sbjct: 298 LQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHV 357
Query: 200 ILDNAVLD 207
I+ NA+++
Sbjct: 358 IVRNALIN 365
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 3/165 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ L+ Q+ + ++ L+ M + N YTF L AC+ A + G +HA V
Sbjct: 289 VWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARV 348
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K G + + ++N+L++ Y I S++ +F +++ D++TW +I G S G K+A+
Sbjct: 349 EKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQAL 408
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+F + PN T + VLSA S LG K G H +RN
Sbjct: 409 QVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNF 453
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 18/154 (11%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+N + L N CP N Y FT AL ACS ++G++ H + K+G + +++++L
Sbjct: 105 KNMVSLQNA---CP---NEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSAL 158
Query: 108 LHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMF------CGI 158
+H Y + A Q+ ++V D+ ++ ++++ L + G +EA+++ C
Sbjct: 159 VHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDEC-- 216
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
V + T V V+ C+ + +LG +HA LR
Sbjct: 217 -VAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLR 249
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+H+ HL NSL+H YV + A +F+++ +VV+W +++G G H
Sbjct: 47 HSHI---SHL------NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNH 97
Query: 149 KEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
E + +F + + PN + LSACS G K G H
Sbjct: 98 LEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHG 141
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P P N L++ S +P +I ++ KM N T+ K+C++A +G ++
Sbjct: 74 PSPISWNILIRGYASSDSPIESIWVFKKMRENGVKPNKLTYPFIFKSCAMALVLCEGKQV 133
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA ++K+G D+++ N++++FY K I A ++F+ + +V+W ++++ + +
Sbjct: 134 HADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVMTACVENVWL 193
Query: 149 KEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
+ I F C + P+ ++V +LS C+ LG LG+ +H+
Sbjct: 194 SDGIGYFFKMRDCAFE--PDETSMVLLLSVCAELGYLSLGRWVHSQ 237
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ + I + KM +C + + L C+ G +H+ +I
Sbjct: 181 NSVMTACVENVWLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLIL 240
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + + +L+ Y + A +F + +V TW+ +I GL++ GF +EA+ +
Sbjct: 241 KGMVLSVHLGTALVDMYGKSGALGYARVVFERMEKRNVWTWSAMIMGLAQHGFAEEALVL 300
Query: 155 FCGI------DVKPNANTLVSVLSACSSLG 178
F + ++ PN T + VL ACS G
Sbjct: 301 FDMMNDKKSNNISPNYVTYLGVLCACSHAG 330
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
++ P + N ++K+ +++ P AI LY +M+ N YT+ LKACS A +G
Sbjct: 118 VRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEG 177
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF-------NSVVFPDVVTWTTI 138
+++HAH++K+G D I +S + Y + + A +I ++V PD
Sbjct: 178 VQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPD------- 230
Query: 139 ISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ G EA+++F + ++P L SVLSAC++LG+ G+ IH ++ RN
Sbjct: 231 -----RKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI 285
Query: 196 ENNIILDNAVLDF 208
+ + +L +++D
Sbjct: 286 QLDGVLGTSLVDM 298
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ ++++M + L AC+ A +G IH + + D + SL+
Sbjct: 237 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 296
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV 168
Y I A ++F + +V +W +I GL+ G ++AID+F +D+ PN T V
Sbjct: 297 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFV 356
Query: 169 SVLSACSSLG 178
VL+AC+ G
Sbjct: 357 GVLNACAHGG 366
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 28 IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA--------CSLA 79
I P L T+ K ++ ++T P ++ L P+ ++ T + KA C+ +
Sbjct: 9 ITNPWPLQTIRKRMSSTATTATEAPYHHHHL-IPNGHSTETSKLSHKAILHLLNTQCTTS 67
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-----DIFSAHQIFNSVVFPDVVT 134
H K + HA +++ GHL D +I SL+ Y V S+ ++F+ V P+V
Sbjct: 68 LHHLK--QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFL 125
Query: 135 WTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
W +I + +AI ++ + V +PN T +VL ACS G G +HAH +
Sbjct: 126 WNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLV 185
Query: 192 R-NLNENNIILDNAV 205
+ L + IL +A+
Sbjct: 186 KHGLGGDGHILSSAI 200
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + +A+ +Y +M C + +T L + S+A + G IH ++K
Sbjct: 311 NALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVK 370
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
I IQ++LL Y D A+ IF+++ DVV W ++ISG + +KEA+D
Sbjct: 371 RPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDF 430
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ VKP+++ + S++SAC+ L LG IH +++ + ++ + +++LD
Sbjct: 431 FRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLD 486
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +++ P +I L++++L + +FT L A S A KG +H ++++
Sbjct: 513 NSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVR 572
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ ++N+L+ Y+ + A IF + ++V W ++I G G +AI++
Sbjct: 573 LWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIEL 632
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ T +S+LS+C+ G
Sbjct: 633 FDEMRSSGIKPDDVTFLSLLSSCNHSG 659
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
+ AC+ G IH VIK G D+F+ +SLL Y A IF+ + ++
Sbjct: 450 ISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNL 509
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V W +IIS + +I++F + D+ P++ + SVL+A SS+ + GK++H +
Sbjct: 510 VAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGY 569
Query: 190 SLRNLNENNIILDNAVLD 207
+R ++ ++N ++D
Sbjct: 570 LVRLWIPFDLQVENTLID 587
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+FT L AC G ++H IK G D ++ SLL Y + I SA ++FN V
Sbjct: 243 SFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEV 302
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
++ W +IS G+ +A+ ++ + V ++ T+++VL++ S G LG+
Sbjct: 303 PDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGR 362
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
IH ++ +++I + +A+L
Sbjct: 363 LIHTEIVKRPLQSSITIQSALL 384
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+K L Q A+ LY K P +T+ LKAC+ Q G IH+ +I G
Sbjct: 28 IKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNS-----VVFPDVVTWTTIISGLSKCGFHKEAI 152
D +I +SL++ YV A ++F+ V DV W +II G + G +E +
Sbjct: 85 HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F S G ++ GK IH++ +RN+ + L+ A++D
Sbjct: 145 VQF----------------GRMQSSGYKE-GKQIHSYIVRNMLNFDPFLETALID 182
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTT 137
+ +++G +IH+++++ D F++ +L+ Y A +F + ++V W
Sbjct: 152 SSGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNV 211
Query: 138 IISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+I G + G + +++ + +VK +++ LSAC GK +H +++
Sbjct: 212 MIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIK 269
>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 17 QLNQIHAQIIKIPQPHIL--------------NTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
+L +++A I +I + H L N+L+ + ++A+ LY +M
Sbjct: 119 KLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGV 178
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ +TF + LKAC + G E+H HV++ G D F+ N+L+ Y DI A +
Sbjct: 179 VPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARK 238
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F+ +V D V+W ++++G + G +A+ +F + +P+A + +V++ SL
Sbjct: 239 VFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSL-- 296
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
KL IH LR + N+ + N+++
Sbjct: 297 -KLAGQIHGWVLRRGVQWNLSIANSLI 322
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNC---PSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N++L + P A+ ++ +ML P + T + + LA +IH
Sbjct: 252 NSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSLKLAG------QIHGW 305
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V++ G ++ I NSL+ Y + A +F+ + DVV+W +IIS K +A
Sbjct: 306 VLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIISAHRK---DLKA 362
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
I F + DV P+ T VS+LSAC+ LG K G+ +
Sbjct: 363 ITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGL 400
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 27 KIPQPHIL--NTLLKLLTQSST-----PQNAIPLYNKMLNCPS-SYNHYTFTQALKACSL 78
+IP+P N+L++ ++ S + + LY +ML+ S + N +T LKAC+
Sbjct: 83 QIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKACT- 141
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTT 137
A +G ++HA +G ++Q LL+ Y +++ A +F+ +V ++V W++
Sbjct: 142 --ALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWSS 199
Query: 138 IISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+I G S+ G EA+ +F + V P+ T+VSV+SAC+ G+ LGK +HA R
Sbjct: 200 MIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKG 259
Query: 195 NENNIILDNAVLDF 208
++ L A++D
Sbjct: 260 ITVDLELSTALIDM 273
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ M + + T + AC+ A A G +HA + + G D+ + +L+
Sbjct: 212 EALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALI 271
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNAN 165
Y I A +F+S+V D W+ +I GL+ G ++A+ +F + V+PN
Sbjct: 272 DMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNV 331
Query: 166 TLVSVLSACSSLG 178
T V VLSAC+ G
Sbjct: 332 TFVGVLSACAHSG 344
>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Glycine max]
Length = 611
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNS 126
+ L+AC AH+ G +HAHV+K G L D F+ NSLL Y + FS A +F++
Sbjct: 55 VYASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDA 114
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ F DV+ WT+IISG + K A+ +F G ++PNA TL S+L ACS L + LG
Sbjct: 115 LPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLG 174
Query: 184 KAIHAHS-LRNLNENNIILDNAVLD 207
K +HA +R + NN ++ A++D
Sbjct: 175 KTLHAVVFIRGFHSNNNVVACALID 199
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHD 100
Q + P+ A+ L+ +ML N +T + LKACS G +HA V G H ++
Sbjct: 131 VQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFHSNN 190
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----- 155
+ +L+ Y + + A ++F+ + PD V WT +IS L++ +EA+ +F
Sbjct: 191 NVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHD 250
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G+ ++ + T ++L+AC +LG ++G+ +H + + N+ +++++LD
Sbjct: 251 GGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLD 302
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
Y+F ++ACS A ++G E+H ++ G D+ ++++L+ Y + A+++F+
Sbjct: 358 YSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRLFSR 417
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
+ +++TW +I G ++ G +E +++F + V+P+ + V+VL ACS
Sbjct: 418 MEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVNVLFACS 469
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/186 (18%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSS--YNHYTFTQALKACSLAHAH 82
++P+P + ++ L ++ + A+ ++ M + + +TF L AC
Sbjct: 216 ELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWL 275
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+ G E+H V+ G ++F+++SLL Y ++ A +F+ + + V T ++
Sbjct: 276 RMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVY 335
Query: 143 SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G + + + + +++ ACS L + + G +H +R +++++
Sbjct: 336 CHNGECGSVLGLVREWRSMVDVYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVE 395
Query: 203 NAVLDF 208
+A++D
Sbjct: 396 SALVDL 401
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 4/186 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+++P +++ +Q+ +AI +Y +M + TF +KAC +A G
Sbjct: 220 MQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLG 279
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HAHVIK H + QN+L+ Y I A +F + D+++W T+I+G +
Sbjct: 280 RQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQL 339
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G+ EA+ +F + +PN SV SACSSL + GK +H ++ N+
Sbjct: 340 GYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFA 399
Query: 202 DNAVLD 207
++ D
Sbjct: 400 GCSLCD 405
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 59 NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
N S + T+T + AC+ + +IH HV+K + I +QN +++ Y +
Sbjct: 152 NSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMK 211
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 175
A ++F+++ P+VV+WT++ISG S+ G +AI M+ + P+ T SV+ AC
Sbjct: 212 DARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACY 271
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
G LG+ +HAH +++ +++ NA++
Sbjct: 272 IAGDIDLGRQLHAHVIKSWFGHHLTSQNALI 302
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q LY +M + + T T L C+ + G ++H + IK
Sbjct: 534 NAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIK 593
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+ + N L+ Y + A +F+S D+V+W+++I G ++CG EA+++
Sbjct: 594 SGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNL 653
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
F + V+PN T + LSACS +G + G ++
Sbjct: 654 FRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLY 689
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 8/200 (4%)
Query: 14 SFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTF 69
+F Q+ +IP +++ T++ Q A+ L+ +L +Y N + F
Sbjct: 307 NFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLR-QGTYQPNEFIF 365
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
ACS + G ++H +K+G ++F SL Y + SA F +
Sbjct: 366 GSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKN 425
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
PD+V+W II+ + G EAID F I + P++ T +S+L C S G+ I
Sbjct: 426 PDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQI 485
Query: 187 HAHSLRNLNENNIILDNAVL 206
H++ ++ + I + N++L
Sbjct: 486 HSYIVKIGFDKEITVCNSLL 505
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IK P N ++ + AI + +M++ + + T+ L C +G
Sbjct: 423 IKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQG 482
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSK 144
+IH++++K G +I + NSLL Y + A +F + ++V+W I+S +
Sbjct: 483 RQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQ 542
Query: 145 CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
E ++ + KP++ T+ ++L C+ L S +G +H +S++ + +IL
Sbjct: 543 KKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIK----SGLIL 598
Query: 202 DNAV 205
D +V
Sbjct: 599 DVSV 602
>gi|297804658|ref|XP_002870213.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316049|gb|EFH46472.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTF 69
+ K++N ++ +P++++ +++ PQ A+ ++ +M S N YTF
Sbjct: 68 VKLKEINTARKVFDEMCEPNVVSWTSVISGYNDMGQPQTALSMFQEMHEDRSVPPNEYTF 127
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV- 128
KACS + G IHA + G +I + +SL+ Y D+ A ++F+S++
Sbjct: 128 ASVFKACSALAESRIGKNIHARLEVSGLRRNIVVSSSLVDMYGKCNDVEMARRVFDSMIG 187
Query: 129 -FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSACSSLGSRKL 182
+VV+WT++I+ ++ EAI++F + +PN L SV++A SSLG +
Sbjct: 188 YGRNVVSWTSMITAYAQNARGHEAIELFRSFNADSTSDRPNQFMLASVINASSSLGRLQW 247
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
G+ H R E+N ++ ++LD
Sbjct: 248 GQISHGLVTRGGYESNNVVATSLLD 272
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA +K G + F N L++ YV +K+I +A ++F+ + P+VV+WT++ISG + G
Sbjct: 44 LHALTLKLGFASNTFTVNHLVNSYVKLKEINTARKVFDEMCEPNVVSWTSVISGYNDMGQ 103
Query: 148 HKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ A+ MF + V PN T SV ACS+L ++GK IHA + NI++ +
Sbjct: 104 PQTALSMFQEMHEDRSVPPNEYTFASVFKACSALAESRIGKNIHARLEVSGLRRNIVVSS 163
Query: 204 AVLD 207
+++D
Sbjct: 164 SLVD 167
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKACSLAHAHQKGLEIHAHV 92
+++ Q++ AI L+ + N S+ N + + A S Q G H V
Sbjct: 197 SMITAYAQNARGHEAIELF-RSFNADSTSDRPNQFMLASVINASSSLGRLQWGQISHGLV 255
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G+ + + SLL Y + A +IF + V+++T++I +K G + A+
Sbjct: 256 TRGGYESNNVVATSLLDMYAKCGSLTCAEKIFFRIRCHSVISYTSMIMAKAKHGLGEAAL 315
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + +KPN TL+ VL ACS G
Sbjct: 316 QLFDEMVAGRIKPNYVTLLGVLHACSHSG 344
>gi|413918395|gb|AFW58327.1| hypothetical protein ZEAMMB73_709604 [Zea mays]
Length = 906
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+++M++ N+ T L CS G E+H+ V+++G D+ + N+L+
Sbjct: 263 ALALFSQMISQGYLPNYSTVASILPVCSFTEFGRHHGKEVHSFVVRHGMEIDVSVSNALM 322
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y V ++ IF S+ D+V+W TII+G G+H A+ +F G+ + P++
Sbjct: 323 THYSKVLEMKDVESIFTSMDVRDIVSWNTIIAGYVMNGYHHRALGLFQGLLSTGIAPDSV 382
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +S+L+AC+ +G K G +H + + L NA++ F
Sbjct: 383 SFISLLTACAQVGDVKTGMEVHGYIFQRPVLQETSLMNALVTF 425
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC------PSSYNHYTFTQALKACSLAHAH 82
P N L+ ++ ++A L+ ML+C P++ T + AC+
Sbjct: 135 PDAVCWNILITACSRRGLFEDAFILFRSMLSCGVGQGMPTAV---TVAVIVPACAKWRHL 191
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV---KDIFSAHQIFNSVVFPDVVTWTTII 139
Q G +H +V+K G D N+L+ Y + + AH+ F+S+ DVV+W ++I
Sbjct: 192 QTGRSVHCYVVKTGLESDTLCGNALVSMYAKCGGSRVMVDAHRAFSSIRCKDVVSWNSVI 251
Query: 140 SGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS-SLGSRKLGKAIHAHSLRNLN 195
+G + EA+ +F + + PN +T+ S+L CS + R GK +H+ +R+
Sbjct: 252 AGYIENQLFGEALALFSQMISQGYLPNYSTVASILPVCSFTEFGRHHGKEVHSFVVRHGM 311
Query: 196 ENNIILDNAVL 206
E ++ + NA++
Sbjct: 312 EIDVSVSNALM 322
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++L Q+ A L+N + + + + L+AC + Q + HA++++
Sbjct: 585 NLMIQLYAQNDMDGQAFSLFNHLQSEGLKPDIVSIANILEACIHLCSVQLVRQCHAYMLR 644
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L DI ++ +L+ Y +I +A+ IF D+VT+T +I + G +EA+++
Sbjct: 645 -ASLEDIHLEGALVDAYSKCGNITNAYNIFQISPKKDLVTFTAMIGCYAMHGMAEEAVEL 703
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
F +D++P+ L ++LSACS G
Sbjct: 704 FSKMLKLDIRPDHVVLTTLLSACSHAG 730
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ + A+ L+ +L+ + + +F L AC+ + G+E+H ++ +
Sbjct: 350 NTIIAGYVMNGYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGDVKTGMEVHGYIFQ 409
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI-- 152
L + + N+L+ FY A + F ++ D ++W I+S + H E
Sbjct: 410 RPVLQETSLMNALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACATSEQHIEKFFV 469
Query: 153 ---DMFCGID-VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+M G++ + ++ T+++V+ + G + + +A H SLR + NA+LD
Sbjct: 470 LMSEMCRGVNQCQWDSVTVLNVIHMSTFCGIKMVREA-HGWSLRVGYTGETSVANAILD 527
Score = 43.5 bits (101), Expect = 0.057, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 88 IHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H +K G + + +++ Y + A +F+ + PD V W +I+ S+ G
Sbjct: 92 LHGLAVKAGRVASSATVAKAVMDAYGRFGSLADALLLFDEMARPDAVCWNILITACSRRG 151
Query: 147 FHKEAIDMF-----CGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
++A +F CG+ P A T+ ++ AC+ + G+++H + ++ E++ +
Sbjct: 152 LFEDAFILFRSMLSCGVGQGMPTAVTVAVIVPACAKWRHLQTGRSVHCYVVKTGLESDTL 211
Query: 201 LDNAVL 206
NA++
Sbjct: 212 CGNALV 217
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
+I N ++ Y+ I A IFN + D+ +W +I ++ +A +F +
Sbjct: 549 NIVTDNIMISCYLKSNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQNDMDGQAFSLFNHLQ 608
Query: 160 ---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+KP+ ++ ++L AC L S +L + HA+ LR E +I L+ A++D
Sbjct: 609 SEGLKPDIVSIANILEACIHLCSVQLVRQCHAYMLRASLE-DIHLEGALVD 658
>gi|224084249|ref|XP_002307242.1| predicted protein [Populus trichocarpa]
gi|222856691|gb|EEE94238.1| predicted protein [Populus trichocarpa]
Length = 561
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNC--PSSYNHYTFTQALKACSLAHAH 82
KI P ++ N+++ ++ +A+ L+ +++ P + YTF + A S A
Sbjct: 171 KIENPDLVSWNSMISGYAENGEGADAMNLFLQLVGVFLPKP-DEYTFAAVISATSAFSAT 229
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G +HA V+K G +FI +LL Y+ DI SA Q+FN + DVV WT +I G
Sbjct: 230 CYGKPLHAQVLKVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGH 289
Query: 143 SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
S+ G + AI +F C K ++ L LSAC+ L + G+ IH +++
Sbjct: 290 SRLGGGESAIKLFSMMCHEGYKIDSFALSGALSACADLATLNQGEMIHTQTVKR 343
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + L+ KM+ +T++ L AC + G IHA VI L D+ +QN+L
Sbjct: 93 EEGVLLFGKMVRHGIVPTEFTYSMILNACGKLGDCRWGQVIHAQVIVLNVLADLPLQNAL 152
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDV-KPN 163
L Y + D + +FN + PD+V+W ++ISG ++ G +A+++F G+ + KP+
Sbjct: 153 LDMYCSCGDTETGFNVFNKIENPDLVSWNSMISGYAENGEGADAMNLFLQLVGVFLPKPD 212
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T +V+SA S+ + GK +HA L+ +E ++ + +L
Sbjct: 213 EYTFAAVISATSAFSATCYGKPLHAQVLKVGSERSVFIGTTLL 255
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF+ +L+AC L G IH +K+G +D+F+Q SLL Y D+ SA+++F
Sbjct: 9 NGSTFSSSLQACCLLEDWFMGSLIHGQSVKHGFFNDVFVQTSLLGMYSNCGDLESANKVF 68
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
VV D V W ++I G K +E + +F + + P T +L+AC LG +
Sbjct: 69 GCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGKMVRHGIVPTEFTYSMILNACGKLGDCR 128
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IHA + ++ L NA+LD
Sbjct: 129 WGQVIHAQVIVLNVLADLPLQNALLDM 155
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++AI L++ M + + + + AL AC+ +G IH +K G +I + SL
Sbjct: 296 ESAIKLFSMMCHEGYKIDSFALSGALSACADLATLNQGEMIHTQTVKRGCDAEISVCGSL 355
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
+H Y D+ +A IF+ V PD+ W +++ G S+ G +EA+ +F I V +P+
Sbjct: 356 VHMYAKNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHGMAEEAMIIFAKILVNGQRPDQ 415
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T +S+LSACS G + GK + +H +N
Sbjct: 416 VTFLSLLSACSHSGLVEEGKLLWSHIKKN 444
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L ++ + A+ +++M Y+ YTF ALKAC+ + A G EIHA +K G
Sbjct: 192 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVS 251
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
F+ N+L Y + +F + DVV+WTTII+ L + G + A+ F +
Sbjct: 252 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRE 311
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
DV PN T +V+S C++L + G+ +HA
Sbjct: 312 SDVSPNEYTFAAVISGCANLARIEWGEQLHA 342
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q + A+ + +M S N YTF + C+ + G ++HA ++
Sbjct: 288 TIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHL 347
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + ++NS++ Y + S+ IF+ + D+V+W+TII+G S+ G EA ++
Sbjct: 348 GLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELL 407
Query: 156 CGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ + KP L SVLSAC ++ + GK +HA+ L
Sbjct: 408 SWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL 446
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ + A KAC L G +H + +K G ++ +F+ ++LL Y IF ++F+
Sbjct: 117 FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ +VV+WT II+GL + G++KEA+ F + V+ ++ T L AC+ G+ G
Sbjct: 177 MPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236
Query: 184 KAIHAHSLR 192
+ IHA +++
Sbjct: 237 REIHAQAMK 245
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ L AC + G ++HA+V+ G H + ++L++ Y I A +IF++
Sbjct: 420 FALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDA 479
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
D+V+WT +I+G ++ G+ +E ID+F I ++P++ T + VLSACS G LG
Sbjct: 480 AENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLG 539
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+ N L V + +A ++F+ + D ++WTT+ISG EA+ +F +
Sbjct: 48 DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107
Query: 160 VKPNANTLVSVLS----ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V+ +LS AC G+ +H ++++ N++ + +A+LD
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLD 159
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L ++ + A+ +++M Y+ YTF ALKAC+ + A G EIHA +K G
Sbjct: 192 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVS 251
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
F+ N+L Y + +F + DVV+WTTII+ L + G + A+ F +
Sbjct: 252 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRE 311
Query: 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
DV PN T +V+S C++L + G+ +HA
Sbjct: 312 SDVSPNEYTFAAVISGCANLARIEWGEQLHA 342
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ L Q + A+ + +M S N YTF + C+ + G ++HA ++
Sbjct: 288 TIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHL 347
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + ++NS++ Y + S+ IF+ + D+V+W+TII+G + G EA ++
Sbjct: 348 GLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELL 407
Query: 156 CGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ + KP L SVLSAC ++ + GK +HA+ L
Sbjct: 408 SWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL 446
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ + A KAC L G +H + +K G ++ +F+ ++LL Y IF ++F+
Sbjct: 117 FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ +VV+WT II+GL + G++KEA+ F + V+ ++ T L AC+ G+ G
Sbjct: 177 MPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236
Query: 184 KAIHAHSLR 192
+ IHA +++
Sbjct: 237 REIHAQAMK 245
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ L AC + G ++HA+V+ G H + ++L++ Y I A +IF++
Sbjct: 420 FALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDA 479
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
D+V+WT +I+G ++ G+ +E ID+F I ++P++ T + VLSACS G LG
Sbjct: 480 AENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLG 539
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+ N L V + +A ++F+ + D ++WTT+ISG EA+ +F +
Sbjct: 48 DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107
Query: 160 VKPNANTLVSVLS----ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V+ +LS AC G+ +H ++++ N++ + +A+LD
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLD 159
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
+IP+ ++ N+++ ++ + A+ ++ +M + + L AC +
Sbjct: 176 EIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLE 235
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G + V++ G + +I ++L+ Y D+ SA +IF+ + DV+TW +ISG +
Sbjct: 236 LGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYA 295
Query: 144 KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G EAI +F + V N TL +VLSAC+++G+ LGK I ++ + +++I
Sbjct: 296 QNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIF 355
Query: 201 LDNAVLDF 208
+ A++D
Sbjct: 356 VATALIDM 363
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI L++ M + N T T L AC+ A G +I + +
Sbjct: 288 NAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQ 347
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G HDIF+ +L+ Y + SA ++F + + +W +IS L+ G KEA+ +
Sbjct: 348 RGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSL 407
Query: 155 F-C----GIDVKPNANTLVSVLSACSSLG 178
F C G +PN T V +LSAC G
Sbjct: 408 FQCMSDEGGGARPNDITFVGLLSACVHAG 436
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 29 PQPHILNTLLKLLTQSS--TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P + N +++ LT + P A+ L+++M++ S N++TF +C+
Sbjct: 78 PNDYAFNIMIRALTTTWHHYPL-ALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPAR 136
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
H+ V K D +SL+ Y + A ++F+ + D+V+W ++I+G +K G
Sbjct: 137 AAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAG 196
Query: 147 FHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNII 200
+EA+++F + + P+ +LVSVL AC LG +LG+ + + R + N+ I
Sbjct: 197 CAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYI 255
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A L+++M++ + TF+ L S ++G EIH ++I+
Sbjct: 318 NGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIR 377
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F++++L+ Y +D+ A +IF+ D+V T +ISG G + A+++
Sbjct: 378 NGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEI 437
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ N+ TL SVL AC+ L + LGK +H H L+N + + + +A++D
Sbjct: 438 FRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMD 493
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
NA+ ++ +L N T L AC+ A G E+H H++K GH ++ ++++
Sbjct: 433 NALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIM 492
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV 168
Y + AHQ F + D V W ++I+ S+ G +EAID+F + + V
Sbjct: 493 DMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCV 552
Query: 169 SV---LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+ LSAC++L + GK IHA +R +++ ++A++D
Sbjct: 553 SISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALID 594
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ P+ AI L+ +M + Y+ + + AL AC+ A G EIHA +++
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 579
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F +++L+ Y ++ A ++F+++ + V+W +II+ G K+++++
Sbjct: 580 GAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNL 639
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
F G+ ++P+ T ++++SAC G ++ + IH
Sbjct: 640 FHGMLGDGIQPDHVTFLAIISACGHAG--QVDEGIH 673
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L ++ NA ++ +M ++ N TF L C+ G ++H V+
Sbjct: 217 NVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVS 276
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D + N+LL Y +F A ++F+ + D+VTW +ISG + GF EA +
Sbjct: 277 SGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCL 336
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F +KP++ T S L S + + GK IH + +RN ++ L +A++D
Sbjct: 337 FHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALID 392
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +++ T A+ Y KML C + + YTF +KAC ++ G +H +
Sbjct: 116 NWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQF 175
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ +SL+ FY I A +F+ + D V W +++G K G A +
Sbjct: 176 MGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGV 235
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + + PN+ T VLS C+S G +H
Sbjct: 236 FMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHG 272
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ C+ +G + HA ++ G ++ + LL YV A IF +
Sbjct: 53 LQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCS 112
Query: 133 VTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
W +I G + G A+ + G P+ T V+ AC L S LG+ +H
Sbjct: 113 EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170
>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
Length = 1029
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I++P N ++ +QS LY M TF L A + A +G
Sbjct: 287 IQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEG 346
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA +K+G ++F+ +SL++ YV I A ++F+ ++V W ++ G +
Sbjct: 347 QQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQN 406
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+E I MF + D++ + T VSVL AC +L S +G+ +H +++N + ++ +
Sbjct: 407 DLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVA 466
Query: 203 NAVLD 207
NA+LD
Sbjct: 467 NAMLD 471
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+N L+ L Q++ AI L+ ++L +++TF L C+ + G ++H++ +
Sbjct: 598 INALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTL 657
Query: 94 KYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVTWTTIISGLSKCGFHK 149
K L+ D + SL+ Y+ K + A+++ V PD +V WT ISG ++ G+
Sbjct: 658 KSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEV--PDHKNLVEWTATISGYAQNGYSD 715
Query: 150 EAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+++ MF + DV+ + T SVL ACS + + GK IH
Sbjct: 716 QSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHG 757
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 5/168 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ L + + A+ + +M + + +F A+ ACS A + G +IH IK
Sbjct: 498 NALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIK 557
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
Y + + +SL+ Y D+ S+ ++ V +V +I+GL + EAI++
Sbjct: 558 YNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIEL 617
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNEN 197
F + KP+ T S+LS C+ S +GK +H+++L++ LN++
Sbjct: 618 FQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQD 665
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCP--SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+L +S +P++ + + + L C + + + L ACS A ++G ++H V+K
Sbjct: 130 VLSCHARSGSPRDVLDAFQR-LRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLK 188
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G F Q L+ Y ++ A ++F+ + PD + W ++I+G + G +++A+ +
Sbjct: 189 SGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALAL 248
Query: 155 FCGID---VKPNANTLVSVLSACSSLG----SRKLGKAIHAHS 190
F ++ P+ T V+++S +S+G +R L K I S
Sbjct: 249 FSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPS 291
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q+ + I ++ M + +TF L AC + G ++H IK
Sbjct: 397 NAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIK 456
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+F+ N++L Y + I A +F+ + D V+W +I GL+ +EA+ M
Sbjct: 457 NSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYM 516
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ + P+ + + ++ACS++ + + GK IH S++
Sbjct: 517 LKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIK 557
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ ++ ++ +M + + TF LKACS A G EIH +IK G +
Sbjct: 710 QNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYET 769
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
++L+ Y D+ S+ +IF + +++ W ++I G +K G+ EA+ +F +
Sbjct: 770 AASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQES 829
Query: 159 DVKPNANTLVSVLSACSSLG 178
+KP+ TL+ VL ACS G
Sbjct: 830 QLKPDEVTLLGVLIACSHAG 849
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+Q+ L + + + K G D +++ ++ + A + + P V W +IS
Sbjct: 242 YQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISS 301
Query: 142 LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S+ G E ++ + + P +T S+LSA +S+ + G+ IHA ++++ + N
Sbjct: 302 YSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDAN 361
Query: 199 IILDNAVLDF 208
+ + +++++
Sbjct: 362 VFVGSSLINL 371
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ P+ + ++N M S + T L C+ A ++G EIH +V++
Sbjct: 213 NTMISGYLKNGKPREVLAIFNLMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVVR 272
Query: 95 YGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
H + + F+ NSL+ Y + A ++F + + D V+W ++ISG ++ E++
Sbjct: 273 NRHSVFNHFLINSLIEMYCKCNSMVDARKLFEHMAWKDTVSWNSMISGYARNRDAFESLR 332
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+FC + KP+ T ++VL AC + + + G+++H++ + I + A++D
Sbjct: 333 VFCRMVLEGTKPDKITFITVLGACEQITAMEFGRSVHSYLSKKGFSATIFVATALID 389
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 3/177 (1%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
QI I + + N +++ + P A+ LY M + + +T+ +KAC
Sbjct: 97 QIIFDGIVLKNSFLWNFMIRGYACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDL 156
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G +H V+ G DI++ NSLL Y ++ A +F+ + D+ +W T+I
Sbjct: 157 RDVEFGWRVHCEVVITGFNLDIYVGNSLLAMYSKFGNMKMARMVFDRMPVRDLTSWNTMI 216
Query: 140 SGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
SG K G +E + +F I + + TL+ +L C+ L + K GK IH + +RN
Sbjct: 217 SGYLKNGKPREVLAIFNLMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVVRN 273
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ ++ ++ ++ +M+ + + TF L AC A + G +H+++ K
Sbjct: 315 NSMISGYARNRDAFESLRVFCRMVLEGTKPDKITFITVLGACEQITAMEFGRSVHSYLSK 374
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G IF+ +L+ Y ++ AH +F + ++ W+ +ISG G +EAI +
Sbjct: 375 KGFSATIFVATALIDMYAKCGNLACAHLVFEEMPEKNLFCWSAMISGYGIHGMGREAISL 434
Query: 155 F 155
F
Sbjct: 435 F 435
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 84 KGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
KG ++HA++I G+L + ++ L FY + + +A IF+ +V + W +I G
Sbjct: 59 KGQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLKNSFLWNFMIRGY 118
Query: 143 SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
+ GF +A+ ++ K + T V+ AC L + G +H + +I
Sbjct: 119 ACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVITGFNLDI 178
Query: 200 ILDNAVL 206
+ N++L
Sbjct: 179 YVGNSLL 185
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 18 LNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L++ A +PQ ++ +L +Q + + L+ +M C N F L
Sbjct: 402 LDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLST 461
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ A + G+++H+ +IK G+ F+ N+LL Y + AH F + DVV+W
Sbjct: 462 CADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSW 521
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
T+I+G ++ GF KEA+++F + KP+ TLV VL+ACS G
Sbjct: 522 NTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSG 567
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGID 159
N++L Y + A IF + D V+W +++ S+ GF +E + +F CG
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEW 449
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
V N + VLS C+ + + + G +H+ ++
Sbjct: 450 V--NRSAFACVLSTCADIAALECGMQLHSRLIK 480
Score = 40.4 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
D+ N+++ Y D+ A ++F+ DV TWT I+SG ++ G +EA +F D
Sbjct: 292 DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVF---D 348
Query: 160 VKPNANTL 167
P+ N +
Sbjct: 349 AMPDKNAV 356
Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP 162
N+L+ YV I A ++FN + DVV+W T++SG ++ G EA +F DV P
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF---DVAP 320
>gi|356577133|ref|XP_003556682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Glycine max]
Length = 773
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +Q A+ + ++ML+ N YT ALKAC A + G ++H +IK
Sbjct: 409 TMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLHGAIIKK 468
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D+FI SL+ Y + + +F+ + + TWT+IISG ++ GF +EA F
Sbjct: 469 ICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFF 528
Query: 156 CGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ +K N T++SVL AC ++ S G+ +HA +++ NI + + ++ F
Sbjct: 529 RLMKMKRIHVNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWF 584
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L AC + G E+HA +IK +I++ ++L+ FY K+ A ++
Sbjct: 539 NKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVL 598
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ F DVV+WT IISG ++ G EA++ + V PN+ T S L AC+ L +
Sbjct: 599 QYMPFRDVVSWTAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACAELEAPI 658
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GK IH+++ + +N+ +++A++
Sbjct: 659 QGKLIHSYASKTPASSNVFVNSALI 683
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N F + C + G +IHA ++K ++ + N+++HFY +I SA + F
Sbjct: 338 NSKMFVCIMNLCGRRVDLELGKQIHARILK-SRWRNLIVDNAVVHFYAKCGNISSAFRAF 396
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + DV+ WTT+I+ S+ GF EA+ M + PN T+ S L AC + K
Sbjct: 397 DCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALK 456
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G +H ++ + ++++ + +++D
Sbjct: 457 FGTQLHGAIIKKICKSDVFIGTSLVD 482
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 88 IHAHVIKYGHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+H V+K+ +H + ++ N+L+ Y+ + + A ++F+ + + VTWT II G K
Sbjct: 260 VHTIVLKF-FIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIIDGYLKFN 318
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
EA +F V N+ V +++ C +LGK IHA L++ N+I+DN
Sbjct: 319 LDDEAFKLFQDCVKHGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKS-RWRNLIVDN 377
Query: 204 AVLDF 208
AV+ F
Sbjct: 378 AVVHF 382
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 53/90 (58%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT++ ALKAC+ A +G IH++ K ++F+ ++L++ Y + A Q+F
Sbjct: 640 NSYTYSSALKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVF 699
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+++ +VV+W ++I ++ G +EA+ +
Sbjct: 700 DNMPERNVVSWESMILAYARNGHAREALKL 729
>gi|218200986|gb|EEC83413.1| hypothetical protein OsI_28873 [Oryza sativa Indica Group]
Length = 481
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 92/186 (49%), Gaps = 3/186 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ + P NT++ Q A+ L+++M + + A+ ACS + G
Sbjct: 197 LPVRTPVTWNTVITEYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGG 256
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH + + D + N L+ Y + +A ++F+ + + ++V+WTT+ISG +
Sbjct: 257 RQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQN 316
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
F+ EAI MF + +P+ S+L++C SL + G+ IHAH ++ E + +
Sbjct: 317 SFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVK 376
Query: 203 NAVLDF 208
NA++D
Sbjct: 377 NALIDM 382
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
++P ++++ +++ + TQ AI L+ N + L+AC+ + A
Sbjct: 94 RMPHRNLVSWGSVISMYTQHGRDDCAISLFAAFQKASCEVPNEFLLASVLRACTQSKAVS 153
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G ++H +K ++++ +L++ Y + + A +F+++ VTW T+I+ +
Sbjct: 154 LGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITEYA 213
Query: 144 KCGFHKEAIDMF--CGID-VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G A+++F GI+ V+P+ L S +SACS+LG + G+ IH ++ R+ E +
Sbjct: 214 QIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTS 273
Query: 201 LDNAVLDF 208
+ N ++D
Sbjct: 274 VINVLIDL 281
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+S AI ++ M + + T L +C A +G +IHAHVIK
Sbjct: 308 TMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKA 367
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D +++N+L+ Y + + A +F+++ D +++ +I G SK EA+++F
Sbjct: 368 DLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIF 427
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ ++P+ T VS+L SS + +L K IH +++ N
Sbjct: 428 HRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSRN 470
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHA G L D+F+ N LL Y + + A +F+ + ++V+W ++IS ++ G
Sbjct: 56 IHARATVAGGLDDVFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 115
Query: 148 HKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
AI +F PN L SVL AC+ + LG+ +H +++ + N+ +
Sbjct: 116 DDCAISLFAAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGT 175
Query: 204 AVLDF 208
A+++
Sbjct: 176 ALINL 180
>gi|115463861|ref|NP_001055530.1| Os05g0409800 [Oryza sativa Japonica Group]
gi|50878475|gb|AAT85248.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113579081|dbj|BAF17444.1| Os05g0409800 [Oryza sativa Japonica Group]
gi|222631576|gb|EEE63708.1| hypothetical protein OsJ_18526 [Oryza sativa Japonica Group]
Length = 401
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
L+ L+ L +S P +A+ + ML +H+T L++C+L + HA +
Sbjct: 14 LSALVTSLARSGRPADALRAFRDMLARGVPPDHFTLPPVLRSCALTGSSPLAASAHALAL 73
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G ++F+ ++L+ Y + ++ A ++F+ + D V WT+++S ++ G + A+
Sbjct: 74 KIGAQGNLFVASALVLCYSGLSNLPDARRLFDGMRERDAVLWTSMLSAYAQGGHPEAALR 133
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F G+ V+ +A +VS L AC +G R+ G+++HA +R L + L NA++D
Sbjct: 134 FFQGMVAARVQLDAVVMVSSLLACGQIGWRRHGRSVHACCIRRLPGMPLSLGNALVDM 191
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++L Q P+ A+ + M+ + +L AC + G +HA
Sbjct: 114 LWTSMLSAYAQGGHPEAALRFFQGMVAARVQLDAVVMVSSLLACGQIGWRRHGRSVHACC 173
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I+ + + N+L+ YV + A ++F + DV++W+ +I G G A+
Sbjct: 174 IRRLPGMPLSLGNALVDMYVKCGEFAFAERVFAGMPRRDVISWSALILGHGLNGRSDVAL 233
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLG 178
+F V+PN+ T + LSAC+ G
Sbjct: 234 RLFDEMAAEGVRPNSVTFLGALSACAHSG 262
>gi|357152420|ref|XP_003576113.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Brachypodium distachyon]
Length = 473
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 41/225 (18%)
Query: 22 HAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81
HA P +++ L+L + SS P + L++ ML + N +TF L++ S + A
Sbjct: 43 HAPAAAFPYNCLIHAHLRLSSTSSPPGAPLRLFSAMLAAGAHPNGHTFPSLLRSASASGA 102
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFY------------------------------ 111
L HA ++ G D F+ SL+ Y
Sbjct: 103 TTTAL--HAQCLRRGLAADRFVACSLVRSYGRAGDLPCDAGKVFDEMRSPDLASCNAMLD 160
Query: 112 --VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA----N 165
+D+ +A F + DVV+WTT+ISGLS+ G H +A++ F G+ V
Sbjct: 161 VLFLARDLATARDFFERMAVRDVVSWTTLISGLSRNGCHWDAVEAFRGLLVHNKGWLGEA 220
Query: 166 TLVSVLSACSSL-GSRKL--GKAIHAHSLRNLNENNIILDNAVLD 207
TLVSVLSAC++L G+ L G A+HA+ +R+ + L A++D
Sbjct: 221 TLVSVLSACANLDGAEGLVVGMAVHAYVVRHQVDLTAFLGTALVD 265
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACS---LAHAHQKGLEIHA 90
TL+ L+++ +A+ + +L + T L AC+ A G+ +HA
Sbjct: 187 TTLISGLSRNGCHWDAVEAFRGLLVHNKGWLGEATLVSVLSACANLDGAEGLVVGMAVHA 246
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+V+++ F+ +L+ Y + + F +V+ +V TW ++S L+ G E
Sbjct: 247 YVVRHQVDLTAFLGTALVDTYGKYGKMDCCKRAFQAVLEKEVCTWNALLSALANHGKETE 306
Query: 151 AIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLG 183
+ F + V PN T +S+L+ C+ G ++G
Sbjct: 307 TLVKFNMMIVGGFLPNQITFLSILTGCARAGLVEIG 342
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ ++++ ++ L+Q+S AI + M C + F+ A++AC+ + + G
Sbjct: 66 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H +K+G ++F+ ++L Y +F A ++F + D V+WT +I G SK
Sbjct: 126 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G +EA+ F + +V + + L S L AC +L + K G+++H+ ++ E++I +
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 245
Query: 203 NAVLD 207
NA+ D
Sbjct: 246 NALTD 250
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +TF+ +KAC+ A ++G ++HA V+K D F+ + L+ Y + A Q F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 367
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ + P + W +++S + G K+AI +F + VKPNA T +S+L+ CS G
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 424
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
++G ++HA +I G+ F+ N L++ Y ++ A ++F+++ ++V+WT +ISGL
Sbjct: 22 RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL 81
Query: 143 SKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
S+ EAI FCG+ + P S + AC+SLGS ++GK +H +L+
Sbjct: 82 SQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALK 134
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ + KM++ + + + L AC A + G +H+ V+K G DIF+ N+L
Sbjct: 189 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 248
Query: 108 LHFYVTVKDIFSAHQIFN-SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
Y D+ SA +F +VV++T +I G + ++ + +F + ++PN
Sbjct: 249 TDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPN 308
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
T S++ AC++ + + G +HA ++ N +E+ +
Sbjct: 309 EFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFV 346
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ ++++ ++ L+Q+S AI + M C + F+ A++AC+ + + G
Sbjct: 66 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H +K+G ++F+ ++L Y +F A ++F + D V+WT +I G SK
Sbjct: 126 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G +EA+ F + +V + + L S L AC +L + K G+++H+ ++ E++I +
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 245
Query: 203 NAVLD 207
NA+ D
Sbjct: 246 NALTD 250
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
++G ++HA +I G+ F+ N L++ Y ++ A ++F+++ ++V+WT +ISGL
Sbjct: 22 RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL 81
Query: 143 SKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
S+ EAI FCG+ + P S + AC+SLGS ++GK +H +L+
Sbjct: 82 SQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALK 134
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N +TF+ +KAC+ A ++G ++HA V+K D F+ + L+ Y + A Q F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAF 367
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ + P + W +++S + G K+AI F + VKPNA T +S+L+ CS G
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAG 424
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ + KM++ + + + L AC A + G +H+ V+K G DIF+ N+L
Sbjct: 189 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 248
Query: 108 LHFYVTVKDIFSAHQIFN-SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
Y D+ SA +F +VV++T +I G + ++ + +F + ++PN
Sbjct: 249 TDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPN 308
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
T S++ AC++ + + G +HA ++ N +E+ +
Sbjct: 309 EFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFV 346
>gi|15239985|ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g43790
gi|10177948|dbj|BAB11307.1| unnamed protein product [Arabidopsis thaliana]
gi|332007627|gb|AED95010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 460
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 45/225 (20%)
Query: 14 SFKQLNQIHAQII-------------------------------KIPQPHIL--NTLLKL 40
S + L QIHAQII +IP P + NTL+
Sbjct: 21 SLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVCLSYALSILRQIPNPSVFLYNTLISS 80
Query: 41 LTQ---SSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKACSL-AHAHQKGLEIHAHVI 93
+ S+ A LY+++L+ S++ N +T+ KA A H+ G +HAHV+
Sbjct: 81 IVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALHAHVL 140
Query: 94 KYGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS---KCGFH 148
K+ HD F+Q +L+ FY + A +F + PD+ TW T+++ + +
Sbjct: 141 KFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSD 200
Query: 149 KEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+E + +F + V+PN +LV+++ +C++LG G H + L+N
Sbjct: 201 EEVLLLFMRMQVRPNELSLVALIKSCANLGEFVRGVWAHVYVLKN 245
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 24 QIIKIPQPHILNTLLKLLTQSS---TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
+ I+ P NTLL S + + + L+ +M P N + +K+C+
Sbjct: 174 ERIREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRMQVRP---NELSLVALIKSCANLG 230
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+G+ H +V+K + F+ SL+ Y + A ++F+ + DV + +I
Sbjct: 231 EFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIR 290
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
GL+ GF +E I+++ + + P++ T V +SACS G
Sbjct: 291 GLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSG 331
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 5/190 (2%)
Query: 23 AQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
A KI +P + NTLL Q Q+ + L+ +M + + T L +CS
Sbjct: 371 AMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLG 430
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
G ++H+ +++ +D+F+ + L+ Y I A IFN + DVV W ++IS
Sbjct: 431 ILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMIS 490
Query: 141 GLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
GL+ ++EA D F G + P ++ S++++C+ L S G+ IHA +++ +
Sbjct: 491 GLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQ 550
Query: 198 NIILDNAVLD 207
N+ + +A++D
Sbjct: 551 NVYVGSALID 560
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/200 (25%), Positives = 104/200 (52%), Gaps = 10/200 (5%)
Query: 14 SFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+F+ IHA I++ H+ N+L+ + T+ A+ +++ + N + + T
Sbjct: 264 AFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILIT 323
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+A S A K LE+ + + G + +++L + +D+ SA +F+ + P
Sbjct: 324 GFGQAGSYA----KALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRP 379
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
V TW T++SG + H++ +++F + +V+P+ TL +LS+CS LG LG +H
Sbjct: 380 SVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVH 439
Query: 188 AHSLRNLNENNIILDNAVLD 207
+ S+R L N++ + + ++D
Sbjct: 440 SASVRFLLHNDMFVASGLVD 459
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 100/203 (49%), Gaps = 13/203 (6%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L+ A + ++P +++ NT++ L +S A+ LY ML H+T L A
Sbjct: 90 LDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSA 149
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C A G H +K G ++F++N+LL Y + A ++F+ + P+ V++
Sbjct: 150 CGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSF 209
Query: 136 TTIISGLSKCGFHKEAIDMFC-----GIDVKPNA--NTLVSVLSACSS----LGSRKLGK 184
T ++ GL + G +A+ +F G+ V P A + L S AC+S + + +LG+
Sbjct: 210 TAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQ 269
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
IHA +R ++ + N+++D
Sbjct: 270 CIHALIVRKGFGSDQHVGNSLID 292
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L S + A + +M ++ + +C+ + +G +IHA ++K
Sbjct: 486 NSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVK 545
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ ++++ ++L+ Y ++ A F+ +V ++V W +I G ++ GF ++A+D+
Sbjct: 546 DGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDL 605
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F + +P+ T ++VL+ CS G
Sbjct: 606 FEYMLTTEQRPDGVTFIAVLTGCSHSG 632
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA--------HAHQKGLEIHAHV 92
L Q+ + +A+ L+ +M + + L +C+ A A + G IHA +
Sbjct: 216 LVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALI 275
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++ G D + NSL+ Y + A ++F+S+ V+W +I+G + G + +A+
Sbjct: 276 VRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKAL 335
Query: 153 DMFCGID---VKPNANTLVSVLSAC 174
++ ++ +PN T ++L++C
Sbjct: 336 EVLNLMEESGSEPNEVTYSNMLASC 360
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 172
D+ +A + + + +VV+W T+I+ L++ EA++++ G+ + P TL SVLS
Sbjct: 89 DLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLS 148
Query: 173 ACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
AC ++ + G+ H +++ + N+ ++NA+L
Sbjct: 149 ACGAVAALDDGRRCHGLAVKVGLDENLFVENALL 182
>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
Length = 811
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+ ++L Q + A+ +Y +M + + TF AL ACS A +G IH+ ++
Sbjct: 299 MTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLL 358
Query: 94 KYGHLH--DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
G + D+ + +LL+ Y + +A +F+ + + +TW ++ ++ G+ KEA
Sbjct: 359 VSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEA 418
Query: 152 IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
++++ +D +PN+ T +++L+ACS++G+ G+A HA
Sbjct: 419 LNLYHSMDAQPNSLTFLAMLTACSTVGALLQGRAAHA 455
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/199 (24%), Positives = 102/199 (51%), Gaps = 7/199 (3%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
K+L++ KI +++ N ++ Q +A+ L+ +M + + TF L
Sbjct: 178 KELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVL 237
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
AC A IH + G D+F+ +SL++ Y + A ++F+++ + V
Sbjct: 238 DACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTV 297
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
T T++++ ++ G +EA++++ ++ K + T +S L ACSS+G+ G+AIH+
Sbjct: 298 TMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRL 357
Query: 191 LRN--LNENNIILDNAVLD 207
L + + + +++L A+L+
Sbjct: 358 LVSGIIQQPDVVLGTALLN 376
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 48 QNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
+ A+ LY + L+ S + A+ ACS A G IHA + H + N
Sbjct: 110 RQALELYQRFLSVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNG 169
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPN 163
L++ Y K++ A + F + ++V+W II ++ G A+++F +D V +
Sbjct: 170 LVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAAD 229
Query: 164 ANTLVSVLSACSSLGSRKLGKAIH 187
A T + VL AC + + + IH
Sbjct: 230 AVTFLHVLDACGGVEAAGDVRRIH 253
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q + A+ LY+ M P N TF L ACS A +G HA +
Sbjct: 403 NALMGSYAQWGYGKEALNLYHSMDAQP---NSLTFLAMLTACSTVGALLQGRAAHARLAP 459
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + +L++ Y + A F + VVTWT + L+ G +E + +
Sbjct: 460 AGFEKEVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTWTVAMLALAHHGEFRETLRL 519
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
F ++ V P++ L++ L ACS G K G++ + +++
Sbjct: 520 FTEMELDGVAPDSVALLAALFACSHSGKLKEGRSYFTNMIQD 561
Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFN--SVVFPDVVTWTTIISGLSKCGFHKEAIDM--- 154
D + +L+ Y + A ++F+ SV + WT ++SG + G ++A+++
Sbjct: 59 DDLVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQR 118
Query: 155 FCGIDVKP-NANTLVSVLSACSSLGSRKLGKAIHAH-SLRNLNEN 197
F + +P + L+S ++ACSS G+AIHA S R L+ +
Sbjct: 119 FLSVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHH 163
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 47/246 (19%)
Query: 7 KSLKPTLSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64
K L+ + +F N H + +P+I NT++ L + + Q +I +Y+ M S
Sbjct: 47 KVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSP 106
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +TF LKAC+ + G+++H V+K G D F+ SL+ Y I +A ++F
Sbjct: 107 DSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVF 166
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGI----------------------- 158
+ + +V WT IISG G +EAIDMF C +
Sbjct: 167 DDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNG 226
Query: 159 ---------------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE--NNIIL 201
+P+ +V VL AC+ LG+ +LG A +L + NE N +L
Sbjct: 227 LPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGN--WASNLMDRNEFLGNPVL 284
Query: 202 DNAVLD 207
A++D
Sbjct: 285 GTALID 290
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+++++ + P+ A+ L+ KMLN + Y L AC+ A + G + +
Sbjct: 216 SSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDR 275
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L + + +L+ Y + SA ++F + D+V W ISGL+ G K A +
Sbjct: 276 NEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGL 335
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F ++ ++P+ NT V +L AC+ G G+
Sbjct: 336 FGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGR 368
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA +++ G D ++ N +L F + +H+IF+ P++ + T+I GL
Sbjct: 29 VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+E+I+++ + + P++ T +L AC+ L KLG +H ++ E++ ++ +
Sbjct: 89 FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTS 148
Query: 205 VL 206
++
Sbjct: 149 LV 150
>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 3/167 (1%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+S P AI ++ ML + ++YT AL ACS ++ + G ++HA VIKY +D
Sbjct: 152 QNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPS 211
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
I N+L Y + + S+ +F S+ +V++WT +IS + G + F + D
Sbjct: 212 IGNALCSLYSKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLED 271
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+KPN TL +VLS C + LG+ +H+ S++ + N+ + N+++
Sbjct: 272 IKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIM 318
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+T + L CS A +G ++HA IK G+L D+ + +L++ Y I A + F
Sbjct: 389 FTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAFVE 448
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
+ +++WTT+I+GL++ G ++A+ +F + V+PN T V VL+AC
Sbjct: 449 MSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAAC 499
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 90/173 (52%), Gaps = 14/173 (8%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+ +N+ML N +T T L C + A G +H+ IK G+ +++ I NS+++
Sbjct: 260 GLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMY 319
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG------LSKCGFHK-----EAIDMFCGI 158
Y+ + A +F+ + ++VTW +ISG L+K F EA+ +F +
Sbjct: 320 LYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLEL 379
Query: 159 DV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ KP+ TL SVL+ CS L + G+ +HA ++++ +++++ A+++
Sbjct: 380 NRTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNM 432
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ C+ ++ + IHAH+IK G D+ + SL++ Y + +A +IF+S+ +V
Sbjct: 81 LQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNV 140
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V WT +++G + AID+F + P+ TL L+ACS++ S KLGK +HA
Sbjct: 141 VAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAF 200
Query: 190 SLR 192
++
Sbjct: 201 VIK 203
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ LTQ+ A+ ++ +M + YTF L AC A ++G +IHA++ +
Sbjct: 247 TMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 306
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ ++F+ ++L+ Y + + A +F +++ ++++WT +I G + G +EA+ +F
Sbjct: 307 CYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVF 366
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +KP+ TL SV+S+C++L S + G H +L + + + NA++
Sbjct: 367 SEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALV 420
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++++M + +T + +C+ + ++G + H + G +
Sbjct: 355 QNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVT 414
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ N+L+ Y I AH++F+ + F D V+WT ++ G ++ G KE ID+F +
Sbjct: 415 VSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKG 474
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
VKP+ T + VLSACS G G++ + HS++
Sbjct: 475 VKPDGVTFIGVLSACSRSGLVDKGRS-YFHSMQ 506
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---- 155
++ + N+++ + K + A +F ++ D +TWTT+++GL++ G EA+D+F
Sbjct: 210 NVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMR 269
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
GID T S+L+AC +L + + GK IHA+ R E+N+ + +A++D
Sbjct: 270 AEGVGID----QYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVD 320
Score = 36.6 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-----D 159
NSLL + ++F S+ D V++ +++G S+ G H A + +
Sbjct: 81 NSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAG 140
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
V+P+ T+ V+ S+LG R LG+ +H LR
Sbjct: 141 VRPSRITMSGVVMVASALGDRALGRQVHCQILR 173
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 99/210 (47%), Gaps = 21/210 (10%)
Query: 11 PTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
PT SF + ++ P ++ N++++ LT + A+ LY++ +
Sbjct: 64 PTSSF--------SVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDT 115
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
YTF + AC+ + IH V+ G D++I N+L+ Y D+ A ++F
Sbjct: 116 YTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEE 175
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---------DVKPNANTLVSVLSACSSL 177
+ DVV+W ++ISG + G+ EA++++ KP+ T+ S+L AC L
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHL 235
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G + GK +H + + + E + N +++
Sbjct: 236 GDLEFGKYVHDYMITSGYECDTTASNILIN 265
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ S + + ++M + + T L CSL A ++G EIH + K
Sbjct: 323 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK 382
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N L+ Y + ++ Q+F + DVVTWT +IS G K+A+
Sbjct: 383 LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRA 442
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F ++ + P+ V+++ ACS G
Sbjct: 443 FGEMEAAGIVPDHVAFVAIIFACSHSG 469
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
F+ +A + A + ++H+ +I G H + L+ Y +D S+ +F +
Sbjct: 16 FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR-LA 74
Query: 129 FP--DVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLG 183
P +V W +II L+ G EA+ ++ I ++P+ T SV++AC+ L ++
Sbjct: 75 SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 134
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
K+IH L +++ + NA++D
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALID 158
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+I L+ +M+N + T T L+AC + G +H ++I G+ D N L++
Sbjct: 207 SIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 265
Query: 110 FYVTVKDIFSAHQIFNSV--------------------------VFP-----DVVTWTTI 138
Y ++ ++ ++F+ + VF D++TW TI
Sbjct: 266 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTI 325
Query: 139 ISGL---SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+ C I V P+ T++S+L CS L +++ GK IH +
Sbjct: 326 IASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 385
Query: 196 ENNIILDNAVLD 207
E+++ + N +++
Sbjct: 386 ESDVPVGNVLIE 397
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ TQ+ A+ ++ +M + + YTF L AC A ++G +IHA++I+
Sbjct: 242 TMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ ++F+ ++L+ Y + I A +F + ++++WT +I G + G +EA+ +F
Sbjct: 302 RYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVF 361
Query: 156 C-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
GID P+ TL SV+S+C++L S + G H +L + + I + NA++
Sbjct: 362 SEMQRDGID--PDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALV 415
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ + A+ ++++M + YT + +C+ + ++G + H + G +H I
Sbjct: 350 QNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYIT 409
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGID 159
+ N+L+ Y I AH++F+ + F D V+WT ++SG ++ G KE ID+F
Sbjct: 410 VSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKG 469
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
VKP+ T + VLSACS G + G++ + HS++
Sbjct: 470 VKPDGVTFIGVLSACSRAGFVEKGRS-YFHSMQ 501
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM----- 154
++ + N+++ + K + A ++F + D +TWTT+++G ++ G EA+++
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMR 264
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F GI + + T S+L+AC +L + + GK IHA+ +R ++N+ + +A++D
Sbjct: 265 FQGIAI--DQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158
++F N+LL + + +F S+ D+V++ +I+G S G H +A+ ++ +
Sbjct: 71 NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130
Query: 159 ----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
V+P+ T+ +++ A S+LG R LGK H LR
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILR 168
>gi|115469032|ref|NP_001058115.1| Os06g0625800 [Oryza sativa Japonica Group]
gi|51535726|dbj|BAD37743.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113596155|dbj|BAF20029.1| Os06g0625800 [Oryza sativa Japonica Group]
Length = 433
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
L +L+ L + A+ L + CP T+ L+ C + G IHA ++
Sbjct: 6 LARMLRSLCVAGDLARAVGLLWRSTVCP---GEGTYALLLQECVNRRDARMGKRIHARMV 62
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G ++I LL FYV + ++ A ++F+ + VV W +ISG ++ G A++
Sbjct: 63 SVGFGGGVYIVTKLLIFYVKIGELGVARKVFDGMPQRSVVAWNAMISGCARGGAEARAVE 122
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLDF 208
MF + ++P+ T SVL AC+ L + + G+ +H +++ + N+ +D+A++D
Sbjct: 123 MFGSMRAEGMRPDQFTFASVLCACARLAALEHGRRVHGVMVKSRVGGGNVFVDSALVDM 181
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ ++ N ++ + A+ ++ M + +TF L AC+ A + G
Sbjct: 96 MPQRSVVAWNAMISGCARGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACARLAALEHG 155
Query: 86 LEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H ++K ++F+ ++L+ Y+ A + F + +V WT +ISG +
Sbjct: 156 RRVHGVMVKSRVGGGNVFVDSALVDMYLKCSSPEEARRAFAAAPARNVTMWTAVISGHGQ 215
Query: 145 CGFHKEAIDMF---CGID-VKPNANTLVSVLSACSSLG 178
G EA+ +F +D ++PN T ++VLSAC+ G
Sbjct: 216 HGRAAEALALFDRMTRVDGLRPNDVTFLAVLSACAHAG 253
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 47/231 (20%)
Query: 9 LKPTLSFKQLNQIHAQ----------IIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNK 56
LK T S+ + HA+ +IPQP ++ T++ ++A+ + +
Sbjct: 76 LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135
Query: 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116
M++ S +TFT L +C+ A A G ++H+ V+K G + + NSLL+ Y D
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195
Query: 117 ---------------------IFSAHQ----------IFNSVVFPDVVTWTTIISGLSKC 145
+ S H +F+ + PD+V+W +II+G
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G+ A++ F + +KP+ TL SVLSAC++ S KLGK IHAH +R
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVR 306
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
Q+ +A+ L+ M+ N+YT L S + G ++HA I+ + +
Sbjct: 388 AQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSV 447
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDMF---CG 157
+ N+L+ Y I A +IFN + + D +TWT++I L++ G EAI++F
Sbjct: 448 SVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLR 507
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKA 185
I++KP+ T V VLSAC+ +G + GK+
Sbjct: 508 INLKPDHITYVGVLSACTHVGLVEQGKS 535
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 39/233 (16%)
Query: 13 LSFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTF 69
+ F Q + A ++ P I+ N+++ A+ ++ ML S + +T
Sbjct: 222 MQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTL 281
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKY-----GHLHDIFIQ-------------------- 104
L AC+ + + G +IHAH+++ G + + I
Sbjct: 282 GSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGT 341
Query: 105 --------NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
SLL Y + DI A IF+S+ DVV WT +I G ++ G +A+ +F
Sbjct: 342 PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFR 401
Query: 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ KPN TL +VLS SSL S GK +HA ++R +++ + NA++
Sbjct: 402 LMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALI 454
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 36/151 (23%)
Query: 85 GLEIHAHVIKYGHLH-DIFIQNSLLHFYVT---------------VKDIFS--------- 119
G IHA +IK+G + +F+ N+LL+ YV +K FS
Sbjct: 31 GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90
Query: 120 -------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
A ++F+ + PD V+WTT+I G + G K A+ F + + P T +
Sbjct: 91 KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
VL++C++ + +GK +H+ ++ L ++ ++
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVK-LGQSGVV 180
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
Query: 15 FKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F L+ + +P + N ++K+ + A+ +++ M + N+YT+
Sbjct: 65 FSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVHDAMRWRGITPNYYTYPFV 124
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKAC A +KG IH H +K G D+F+ N+L+ FY +D+ + ++F+ + D+
Sbjct: 125 LKACGAEGASKKGRVIHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDI 184
Query: 133 VTWTTIISGLSKCGFHKEAI----DMFCGIDV-KPNANTLVSVLSACSSLGSRKLGKAIH 187
V+W +++SG + G+ +AI DM V P+ T V+VL A + G IH
Sbjct: 185 VSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIH 244
Query: 188 AHSLRNLNENNIILDNAV 205
+ ++ + LD+AV
Sbjct: 245 CYIVK----TRMGLDSAV 258
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ + +T+ L C +K HA V+ GH D FI L+ Y ++ A ++F
Sbjct: 19 DSFYYTELLNLCKTTDNVKKA---HAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVF 75
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLGSRK 181
+++ PDV +I + EA+ D + PN T VL AC + G+ K
Sbjct: 76 DNLSEPDVFCCNVVIKVYANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACGAEGASK 135
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLDF 208
G+ IH H+++ + ++ + NA++ F
Sbjct: 136 KGRVIHEHAVKCGMDLDLFVGNALVAF 162
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAH 82
+IP I+ N+++ T + +AI L+ ML S +H TF L A + A
Sbjct: 178 EIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADI 237
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G IH +++K D + L+ Y + A IF+ + V+ W+ II
Sbjct: 238 HAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCY 297
Query: 143 SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
G +EA+ +F G ++P+ + +LSACS G
Sbjct: 298 GTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAG 336
>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
K T + + N+I + + ++ N ++ + ++A+ + +M + + YTF
Sbjct: 307 KCTNNLEDFNKISSGV-QLSDQISWNAVIAGYSNLGLGEDALKCFCEMRHANIKMDFYTF 365
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
T L A A ++G E+HA ++K G+ +++QN L+ Y I + ++F +
Sbjct: 366 TSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYARCGAIDDSKRVFWLMED 425
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
DVV+W +++G + GF EA+++F + +KPN+ T ++VLSACS +GS G
Sbjct: 426 HDVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLAVLSACSHVGSVDKG 482
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+ +L S N Y + + C+ ++ G+++H+ +I+ G ++ I ++++ Y
Sbjct: 56 LFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYA 115
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISG----LSKCGFHKEAIDMFCGIDVKPNANTLV 168
+I SAH++FN + + VTW ++I G + C G+ + ++
Sbjct: 116 KCSEIQSAHEVFNEMPERNDVTWNSLIFGYLNVMPTCAMR--------GV----TSFSVS 163
Query: 169 SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ L CS L R G +H SL+ +NN+ + A++D
Sbjct: 164 TCLVVCSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALID 202
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++ Q+ P A+ L +M+ N+ T+ L + S Q ++H +I+
Sbjct: 230 AMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKYMQYCKQVHCSIIRC 289
Query: 96 GHLHDIFIQNSLLHFYV-TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +++I +L+ Y ++ ++I + V D ++W +I+G S G ++A+
Sbjct: 290 GLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKC 349
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
FC + ++K + T S+L A + + + G+ +HA ++ +++ + N ++
Sbjct: 350 FCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLV 404
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 27/227 (11%)
Query: 2 FVNGLKSLKPTLSFKQLN-QIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKM 57
F+N + S + L Q+H+ II++ HI + ++ + + S Q+A ++N+M
Sbjct: 71 FINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYAKCSEIQSAHEVFNEM 130
Query: 58 ---------------LN----CP-SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
LN C ++ + L CS G ++H +K G
Sbjct: 131 PERNDVTWNSLIFGYLNVMPTCAMRGVTSFSVSTCLVVCSQLEVRNFGAQVHGLSLKLGF 190
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA---IDM 154
+++F+ +L+ Y + + ++F+ +V +VVTWT +++ ++ EA +
Sbjct: 191 DNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVRE 250
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+ +K N T S+LS+ S + K +H +R E N+ +
Sbjct: 251 MMRLGIKANYVTYNSLLSSFSGPKYMQYCKQVHCSIIRCGLECNLYI 297
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+I N++++ +++ A+ Y K+ S + YTF +KAC+ + G ++
Sbjct: 72 YIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQ 131
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+++ G D+++ N+L+ Y + + A Q+F+ + D+V+W ++ISG S G+++EA
Sbjct: 132 ILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++++ + + P++ T+ SVL A ++L K G+ +H +L++ + +++N +L
Sbjct: 192 LEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLL 249
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ QS A+ L+ M+ +H T+ + + + G +H++ IK
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIK 436
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + N+L+ Y ++ + +IFNS+ D VTW T+IS + G + +
Sbjct: 437 SGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQV 496
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ V P+ T + L C+SL +++LGK IH LR E+ + + NA+++
Sbjct: 497 TTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIE 552
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + + A+ +Y+++ N + +T + L A + ++G +H +K
Sbjct: 176 NSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLK 235
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + N LL Y+ A ++F+ +V D VT+ T+I G K +E++ M
Sbjct: 236 SGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKM 295
Query: 155 FC-GID-VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F +D KP+ T+ SVL AC L L K I+ + LR
Sbjct: 296 FLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLR 335
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T L AC I+ ++++ G + + ++N L+ Y D+ +A +FNS+
Sbjct: 309 TVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSM 368
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
D V+W +IISG + G EA+ +F ++ + + T + ++S + L K GK
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGK 428
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H++ +++ ++ + NA++D
Sbjct: 429 GLHSNGIKSGIYIDLSVSNALID 451
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF L C+ A + G EIH ++++G+ ++ I N+L+ Y + S+ ++F +
Sbjct: 511 TFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERM 570
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
DVVTWT +I G ++A++ F ++ + P++ ++++ ACS G + G
Sbjct: 571 SRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGL 630
Query: 185 A 185
A
Sbjct: 631 A 631
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCG 146
IHA VI G F L+ Y + S+ +F V +V W +II SK G
Sbjct: 26 IHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNG 85
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ +A++ + + V P+ T SV+ AC+ L ++G ++ L E+++ + N
Sbjct: 86 WFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGN 145
Query: 204 AVLD 207
A++D
Sbjct: 146 ALVD 149
>gi|357484403|ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513824|gb|AES95447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 955
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NT++ + Q A+ + M PS +Y+ T L A + +G +H+ +
Sbjct: 578 NTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLAL 637
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K D +QNSL+ Y +DI SA ++F ++ TW +IS LS +EA++
Sbjct: 638 KSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHSISNLCTWNCMISALSHNKESREALE 697
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+F + KPN T+VSVLSAC+ +G GK +H ++ R + N + A++D
Sbjct: 698 LFRHLQFKPNEFTIVSVLSACTRIGVLIHGKQVHGYTFRYGYQQNSFISAALVDL 752
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ + A L+ ++L C + + T L +C+ A++ G +H +K
Sbjct: 476 NAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLK 535
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIF--NSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G L+ + NSL+ Y+ D+ S I NS + D+ +W TII G + +EA+
Sbjct: 536 SGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSI-ADIASWNTIIVGCVRGDQFQEAL 594
Query: 153 DMFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ F + P+ N TLV+VLSA +++ GK++H+ +L++
Sbjct: 595 ETFMLMRQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLALKS 639
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ + + ++ + +M +H + + A+ ACS G IH IK
Sbjct: 270 NSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSCAISACSSLGELAFGECIHGQGIK 329
Query: 95 YGHLHDIFIQ--NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G+ + F+ NSL+ Y + + A +F + + D+V+W ++ G + EA
Sbjct: 330 LGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMAYKDIVSWNAMMEGYASNENIHEAF 389
Query: 153 DMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
D+ + +P+ TL ++L C+ L + G+ IH +++R + +++ L N ++D
Sbjct: 390 DLMVEMQTTGCFQPDIVTLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRNGLID 449
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNS 126
T T L C+ +++G IH + I+ + D + ++N L+ Y + A +F+S
Sbjct: 407 TLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHS 466
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRK 181
D+V+W +ISG S+ ++++A ++F CG + +++T+ ++LS+C+S S
Sbjct: 467 TAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNC--SSSTVFAILSSCNSANSLN 524
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
GK++H L++ N+ +L N+++
Sbjct: 525 FGKSVHIWQLKSGFLNHTLLVNSLM 549
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ L+ + + A+ L+ + P N +T L AC+ G ++H + +
Sbjct: 680 NCMISALSHNKESREALELFRHLQFKP---NEFTIVSVLSACTRIGVLIHGKQVHGYTFR 736
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
YG+ + FI +L+ Y T + +A ++F + W ++I+ G ++AI++
Sbjct: 737 YGYQQNSFISAALVDLYSTCGRLDNAVKVFRHSQKSE-SAWNSMIAAYGNHGNGEKAIEL 795
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F C + +K +T VS+LSACS G
Sbjct: 796 FHEMCDLGIKVTKSTFVSLLSACSHSG 822
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ + KM+ + ++ T + S +G IH IK
Sbjct: 167 NAIISASLENKCYRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIK 226
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G L DI + N+L++ Y D+ S+ +F + + DVV+W +I+ G G ++++
Sbjct: 227 SGMLVDISLCNALINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSL 286
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + + + + +L +SACSSLG G+ IH ++
Sbjct: 287 CYFRRMNFSEERADHVSLSCAISACSSLGELAFGECIHGQGIK 329
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +K G L + SL Y D S+ +F + DV+ W IIS +
Sbjct: 119 VHCAALKTGALAYLPTSTSLFTLYSKAGDFTSSRVLFEHIHNRDVIAWNAIISASLENKC 178
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
++ A++ F + + ++ TL+ V+S S L + G+ IH S+++ +I L NA
Sbjct: 179 YRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNA 238
Query: 205 VLD 207
+++
Sbjct: 239 LIN 241
>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 436
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ Q++ A+ L+ M N T L+AC+ + G ++H HV
Sbjct: 223 VWNSIIAGFAQNNDGDEALNLFKSMKRNGFPANQSALTSVLRACTGLALLELGRQVHVHV 282
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
K H D+ + N+LL Y + A+ +F +V DV++W+T+I+G ++ G+ +EA+
Sbjct: 283 FK--HDQDLVLNNALLDMYCKCGSLEDANYVFTRMVEKDVISWSTMIAGFAQNGYSREAL 340
Query: 153 DMFCGIDV---KPNANTLVSVLSACSSLGSRKLG 183
+F + V KPN T++ VL ACS G + G
Sbjct: 341 KLFESMKVSGTKPNYITILGVLFACSHAGLLEAG 374
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F L++ ++P+ ++++ T++ + + A+ ML N YT++
Sbjct: 103 VKFNLLDEALTLFDQMPERNVVSWTTMISAFSNAKLNDKALEFLICMLREGVKPNVYTYS 162
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L+AC + + ++H ++IK G D++++++L+ Y + +A +FN +V
Sbjct: 163 SILRACDGVYNLR---QLHGNIIKSGLDSDVYVRSALIDIYSKWGESENALYVFNEMVTG 219
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
D++ W +II+G ++ EA+++F + N + L SVL AC+ L +LG+ +H
Sbjct: 220 DLIVWNSIIAGFAQNNDGDEALNLFKSMKRNGFPANQSALTSVLRACTGLALLELGRQVH 279
Query: 188 AHSLRNLNENNIILDNAVLD 207
H + ++ +++L+NA+LD
Sbjct: 280 VHVFK--HDQDLVLNNALLD 297
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ +T+++ +K C +A ++G +++ H+ G+ +IF+ N LL+ YV + A +F
Sbjct: 56 DSFTYSELIKCCLARNAIEQGKQVYKHLSSNGYQPNIFLINMLLNMYVKFNLLDEALTLF 115
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAID-MFCGI--DVKPNANTLVSVLSACSSLGSRK 181
+ + +VV+WTT+IS S + +A++ + C + VKPN T S+L AC + +
Sbjct: 116 DQMPERNVVSWTTMISAFSNAKLNDKALEFLICMLREGVKPNVYTYSSILRACDGVYNL- 174
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
+ +H + +++ ++++ + +A++D
Sbjct: 175 --RQLHGNIIKSGLDSDVYVRSALID 198
>gi|449457630|ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like [Cucumis sativus]
gi|449529896|ref|XP_004171934.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like [Cucumis sativus]
Length = 544
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 6/192 (3%)
Query: 22 HAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
H ++PQ I LN+LL + +A L+++M S +T T L ACS
Sbjct: 46 HQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSAL 105
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
Q G +H +IK G I + ++L Y + + ++F + DVV W +++
Sbjct: 106 PTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLL 165
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
S + G +EA+++F + V+ + TL SVL AC++L +LGK +H + +N
Sbjct: 166 SSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLGKQVHG-VVVVMNR 224
Query: 197 NNIILDNAVLDF 208
+ ++L A++DF
Sbjct: 225 DMLVLGTALVDF 236
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+LL + + A+ ++ +M ++ +T LKAC+ ++ G ++H V+
Sbjct: 162 NSLLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLGKQVHGVVVV 221
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCGFHKEAID 153
+ + +L+ FY +V I A +++ S+ D + ++ISG + ++EA
Sbjct: 222 MNR-DMLVLGTALVDFYSSVGCISEAVKVYTSLNCRKDDIILNSLISGCVRNKRYEEAFS 280
Query: 154 MFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++PNA L S L ACS +GK IH S+R+ +N L N +LD
Sbjct: 281 LMS--KMRPNAIALTSALHACSENSDLWIGKQIHCVSVRHGLTSNTQLCNILLDM 333
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
ILN+L+ ++ + A L +KM N T AL ACS G +IH
Sbjct: 261 ILNSLISGCVRNKRYEEAFSLMSKM-----RPNAIALTSALHACSENSDLWIGKQIHCVS 315
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+++G + + N LL Y + +A +F+ + +VV+W+++I G +A
Sbjct: 316 VRHGLTSNTQLCNILLDMYAKCGKVLNARAVFDGMCHKNVVSWSSMIQTYGSHGDGLKAF 375
Query: 153 DMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGK 184
++F V PN+ T +SVLSAC G + G+
Sbjct: 376 ELFKIMVEGRTGVLPNSVTFLSVLSACGHSGLVQQGQ 412
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 8/189 (4%)
Query: 27 KIPQPHI----LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+IP P I + +++ + + A+ LY KMLN +T+ LKAC+ A
Sbjct: 60 EIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAI 119
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+ G IH+HV D+++ +L+ FY ++ A ++F+ + D+V W +ISG
Sbjct: 120 EDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGF 179
Query: 143 SKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S + I +F + + PN +T+V + A G+ + GKA+H + R N+
Sbjct: 180 SLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSND 239
Query: 199 IILDNAVLD 207
+++ +LD
Sbjct: 240 LVVKTGILD 248
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ ++ + + L+++M + + T L ACS A G H + +
Sbjct: 378 NSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVV 437
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + I N+L+ Y ++ A ++F+++ D+V+W T++ G G KEA+ +
Sbjct: 438 NGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSL 497
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
F + V P+ TL+++LSACS G GK +
Sbjct: 498 FNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQL 532
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H + IK G + D+ + N+++ FY + A + F + D+V++ ++ISG +
Sbjct: 330 VHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCR 389
Query: 148 HKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+E+ +F + ++P+ TL+ +L+ACS+L + G + H + + N N + NA
Sbjct: 390 AEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNA 449
Query: 205 VLD 207
++D
Sbjct: 450 LMD 452
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
S N T A A A ++G +H + + G +D+ ++ +L Y K I A +
Sbjct: 202 SPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARR 261
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSV-----LSACSSL 177
+F+S + VTW+ +I G + KEA ++F + V + + V L C+
Sbjct: 262 VFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARF 321
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G G+ +H ++++ ++ + N V+ F
Sbjct: 322 GDLSGGRCVHCYAIKAGFILDLTVGNTVISF 352
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T+J ++ + + ++N +L + N TF+ L AC+ + KG+ +H +IK
Sbjct: 418 TIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL 477
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G +DIF+ +L Y DI S+ Q+F + + ++WT +I GL++ GF E++ +F
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537
Query: 156 CGI----DVKPNANTLVSVLSACSSLG 178
+ +V PN L+SVL ACS G
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCG 564
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 34/193 (17%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ ++L N TFT ++AC G+ I V+K G H + + NSL+
Sbjct: 168 ALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLIT 227
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTI------------------------------- 138
+ + +I A ++F+ + DVV+WT I
Sbjct: 228 LSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAM 287
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+ S+ G+ +EA+ +F + KPN + LSA +SL + G IH H +
Sbjct: 288 IARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGI 347
Query: 196 ENNIILDNAVLDF 208
+ ++ + ++++D
Sbjct: 348 DKDVFIGSSLIDL 360
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ +QS + A+ L++KM+ N F L A + A G+ IH HV K
Sbjct: 285 SAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTK 344
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH------ 148
G D+FI +SL+ Y +F+ ++ +VV W +++ G S G
Sbjct: 345 IGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEEL 404
Query: 149 -------------------------KEAIDMFCGIDVK---PNANTLVSVLSACSSLGSR 180
++ +++F + V PN +T SVL AC+S+ S
Sbjct: 405 FELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASL 464
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
G +H ++ + +I + A+ D
Sbjct: 465 DKGMNVHGKIIKLGIQYDIFVGTALTD 491
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
F +VV+WT ISG + G + EA+ +F + V+PN T SV+ AC LG LG +
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205
Query: 186 I 186
I
Sbjct: 206 I 206
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 7/207 (3%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSS 63
+K +K L+ L + KIP+P + L+ TQ P+ AI +Y+ +L+
Sbjct: 15 IKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVR 74
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
+ + KAC+ + +IH I++G D+ + N+L+ + K + A +
Sbjct: 75 PDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCV 134
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--CGID-VKPNANTLVSVLSACSSLGSR 180
F+ +V DVV+WT++ CG ++ I +F G++ ++ N+ T+ S+L AC+
Sbjct: 135 FDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--I 192
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
KLG+ +H LRN E N+ + +A+++
Sbjct: 193 KLGREVHGFILRNEMEGNVYVSSALVN 219
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
+Q+ + IK+ Q N + Q+ + A+ + KM + N T AL C+
Sbjct: 265 FHQMRKEGIKLNQAS-WNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCT 323
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ + G EIH +V ++ + D+ I +L+ Y D+ + +FN++ DVV W T
Sbjct: 324 NLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNT 383
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
+I S G E++ +F + V+PN+ T + VLS CS
Sbjct: 384 MIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCS 424
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 40/180 (22%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + L AC A + G E+H +++ ++++ ++L++ Y + + A +F
Sbjct: 177 NSLTVSSILPAC--ADYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVF 234
Query: 125 NSVVFPDVVTWTTI-----------------------------------ISGLSKCGFHK 149
+S+ D+V+W + ISG + G H+
Sbjct: 235 DSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHE 294
Query: 150 EAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
A+ + C + +KPN T+VS L C++L S + GK IH + R+ ++ + A++
Sbjct: 295 LALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALV 354
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 13/162 (8%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
++++ Q+ P AI + +M+ CP + + F A KAC++ G +H
Sbjct: 124 SSVISSFAQNEEPVLAIQYFCRMIGENLCP---DDHIFPSATKACAILGRCDVGKSVHCL 180
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
VIK G+ D+F+ +SL+ Y DI A +F+ + +VV+W+ +I G ++ G H+EA
Sbjct: 181 VIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEA 240
Query: 152 IDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ +F G+DV N TL SV+ C S +LGK IH
Sbjct: 241 MRLFKEALLEGLDV--NDFTLSSVIRVCGSATLLELGKQIHG 280
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
TQ + A+ L+ + L N +T + ++ C A + G +IH K +
Sbjct: 232 TQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSG 291
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
F+ +SL+ Y I A+++F+ V ++ W ++ ++ KEA D+F ++
Sbjct: 292 FVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENA 351
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
++PN T + VL ACS G + GK A
Sbjct: 352 GMRPNFITFLCVLYACSHAGLVEEGKKYFA 381
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG +IHAH+IK G + + L++FY + + Q+F TW+++IS +
Sbjct: 72 KGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFA 131
Query: 144 KCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ AI FC G ++ P+ + S AC+ LG +GK++H ++ + ++
Sbjct: 132 QNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVF 191
Query: 201 LDNAVLDF 208
+ ++++D
Sbjct: 192 VGSSLVDM 199
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 5/195 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
L H KIP+ ++ N L++ + + AI LY++ML +++T LKA
Sbjct: 109 LRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKA 168
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
CS +G IH VI+ G D+F+ +L+ Y + A +F+ +V D V W
Sbjct: 169 CSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLW 228
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
++++ ++ G E++ + C + V+P TLV+V+S+ + + G+ IH R
Sbjct: 229 NSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWR 288
Query: 193 NLNENNIILDNAVLD 207
+ + N + A++D
Sbjct: 289 HGFQYNDKVKTALID 303
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 40 LLTQSSTPQNAIPLYNKMLNCPSS-YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL 98
L QS Q IP + K+ + PSS NHY + L++C A A + G ++HA + + G
Sbjct: 33 FLHQSFATQ-LIPQH-KVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIA 90
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
+++ + L++FY + +AH +F+ + ++ W +I + G H+ AI ++ +
Sbjct: 91 YNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQM 150
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+KP+ TL VL ACS+L + G+ IH +R+ E ++ + A++D
Sbjct: 151 LEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVD 202
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L Q+ P ++ L +M T + + + G EIH +
Sbjct: 229 NSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWR 288
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ ++ +L+ Y + A +F + VV+W II+G + G EA+D+
Sbjct: 289 HGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDL 348
Query: 155 FCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
F + + +P+ T V L+ACS G+A++ +R+ N
Sbjct: 349 FERMMKEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRIN 393
>gi|302780131|ref|XP_002971840.1| hypothetical protein SELMODRAFT_96526 [Selaginella moellendorffii]
gi|300160139|gb|EFJ26757.1| hypothetical protein SELMODRAFT_96526 [Selaginella moellendorffii]
Length = 378
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 10/201 (4%)
Query: 17 QLNQIHAQIIKIPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
++ + KIP P++ ++ Q+ P A+ L +M + + + A+
Sbjct: 7 RVEEARCVFAKIPAPNLYSWTMIVTAYAQNGHPHEALGLLRRMDLDGTPPDKVVLSIAVT 66
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDV 132
AC+ A G +IH V G + D F+++SL++ Y T +I A +F+S+ ++
Sbjct: 67 ACASICALSLGKQIHHRVATLGVIDD-FLRSSLINLYGTCGEISLAKSVFDSMAAGATNL 125
Query: 133 VTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V W T+I ++CG I++F V+P+A TLVS + C+ LG + +AIHA
Sbjct: 126 VCWATMIKAFARCGQFLAGIELFWEWISRGVEPDAVTLVSAVDCCAGLGDLQQSQAIHAR 185
Query: 190 SL--RNLNENNIILDNAVLDF 208
L + N I + NA+LD
Sbjct: 186 VLAAAGMESNEIKVSNAILDM 206
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++K + I L+ + ++ + T A+ C+ Q+ IHA V+
Sbjct: 130 TMIKAFARCGQFLAGIELFWEWISRGVEPDAVTLVSAVDCCAGLGDLQQSQAIHARVLAA 189
Query: 96 GHLH--DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ +I + N++L Y + A +F+ + ++WT++++ ++ G A++
Sbjct: 190 AGMESNEIKVSNAILDMYARCGSVDDARALFDRMASRTNISWTSMVAAYAQNGHPSLALE 249
Query: 154 MFCGID---VKPNANTLVSVLSAC 174
+ +D + NA T +++LSAC
Sbjct: 250 ISREMDQVGMSKNAITFITILSAC 273
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 3/175 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L QS + A LY++M Y + L AC+ +G IHA V K
Sbjct: 115 MLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQA 174
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+ F+ N+L+ Y+ A ++F ++F D VT+ T+ISG ++CG + A+ +F
Sbjct: 175 FCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFD 234
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ ++P+ T+ S+L+AC+S+G + GK +H++ L+ + I + ++LD
Sbjct: 235 EMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDL 289
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ KM + YN +TF A+ A + ++G ++H +K
Sbjct: 517 NGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVK 576
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
GH + + N+L+ Y I A IF+ + + V+W TII+ S+ G EA+D+
Sbjct: 577 TGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDL 636
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + +KPN T + VL+ACS +G
Sbjct: 637 FDQMKQEGLKPNDVTFIGVLAACSHVG 663
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ + +M +C ++ A AC+ A ++GL+IHA V G+ DI I N+L
Sbjct: 429 EEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTL 488
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
++ Y A +F + D +TW +ISG + +K+A+ +F + K N
Sbjct: 489 VNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNV 548
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T +S +SA ++L K GK +H +++ + + + NA++
Sbjct: 549 FTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISL 592
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 3/177 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NTL+ Q + A+ ++++M + T L AC+ QKG ++H++++
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G D + SLL YV DI +AH IFN +VV W ++ + ++ +
Sbjct: 273 KAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFE 332
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + + PN T +L C+ G +LG+ IH+ S++N E+++ + ++D
Sbjct: 333 IFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLID 389
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q S + ++ +M N +T+ L+ C+ + G +IH+ IK
Sbjct: 315 NLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIK 374
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+++ L+ Y + A +I + DVV+WT++I+G + F +EA+
Sbjct: 375 NGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALAT 434
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F CG V P+ L S SAC+ + + + G IHA
Sbjct: 435 FKEMQDCG--VWPDNIGLASAASACAGIKAMRQGLQIHA 471
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKG------LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118
+H A C+L +G LEIHA + G D I N L+ Y ++
Sbjct: 36 HHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVW 95
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 175
A Q+F + D V+W ++SG ++ G KEA ++ + V P L SVLSAC+
Sbjct: 96 QARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACT 155
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
G+ IHA + + + NA++
Sbjct: 156 KGKLFAQGRMIHAQVYKQAFCSETFVGNALI 186
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 32 HIL-NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
HIL N+LL Q+ + + A+ ++ +ML TF+ + C + + G ++HA
Sbjct: 236 HILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHA 295
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+VI G ++FI +SL+ Y +I AH IF+ + PDVV+WT +I G + G +E
Sbjct: 296 YVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPARE 355
Query: 151 AIDMFCGIDV---KPNANTLVSVLSACSSLG 178
A+ +F +++ KPN T ++VL+ACS G
Sbjct: 356 ALVLFERMELGNAKPNHITFLAVLTACSHAG 386
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ + A+ KM + +T + L + ++GLE+H +
Sbjct: 139 NTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFR 198
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ +SL+ Y + ++F+++ D + W ++++G ++ G +EA+ +
Sbjct: 199 NGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGI 258
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F V+P T S++ C +L S + GK +HA+ + E+N+ + ++++D
Sbjct: 259 FRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLID 314
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 49 NAIPLYNKMLN--CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
+A+ L+ +M P S + ALK+C+ G +HA I+ G D F N+
Sbjct: 31 DAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANA 90
Query: 107 LLHFY------------VTVKDI-------FSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
LL+ Y V + D+ S ++F+ ++ DVV+W T++ G ++ G
Sbjct: 91 LLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGR 150
Query: 148 HKEAIDM---FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
H EA+ C +P++ TL +VL + K G +H + RN ++++ + ++
Sbjct: 151 HHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSS 210
Query: 205 VLD 207
++D
Sbjct: 211 LID 213
>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 874
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 22/197 (11%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
+ N ++ ++ AI L+ +M+ S N T + L AC + IH+
Sbjct: 356 VWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSC 415
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V+K+G D ++QN+L+ Y + I A IF S+ D+V+W T+I+G CG H +A
Sbjct: 416 VVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDA 475
Query: 152 IDMFCGID---------------------VKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+++ + +KPN+ TL++VL C++L + GK IHA++
Sbjct: 476 LNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYA 535
Query: 191 LRNLNENNIILDNAVLD 207
++ + ++ + +A++D
Sbjct: 536 VKQMLSKDVAVGSALVD 552
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI 103
SST AI Y M+ +++ F LKA + G ++HAHV K+G +
Sbjct: 63 SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV 122
Query: 104 QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DV 160
NSL++ Y DI +A ++F+ + D V+W ++I+ + + A+ +F + +V
Sbjct: 123 PNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENV 182
Query: 161 KPNANTLVSVLSACSSL-GSRKLGKAIHAHSLRN 193
P + TLVSV ACS+L LGK +HA LRN
Sbjct: 183 GPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRN 216
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ L+ ML +T ACS L + G ++HA V++ G F N+L+
Sbjct: 170 AVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWR-TFTNNALV 228
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI---DMFCGIDVKPNAN 165
Y + ++ A +F+ D+V+W TIIS LS+ +EA+ + V+PN
Sbjct: 229 TMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGV 288
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNII 200
TL SVL ACS L GK IHA L N L EN+ +
Sbjct: 289 TLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFV 325
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L+Q+ + A+ + ML N T L ACS G EIHA V+
Sbjct: 256 NTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLM 315
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L + F+ +L+ Y K +F+ + + W +I+G + F EAI+
Sbjct: 316 NNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIE 375
Query: 154 MFC----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + + PN+ TL SVL AC S + IH+ ++ E + + NA++D
Sbjct: 376 LFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMD 433
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
N Y N P N T L C+ A KG EIHA+ +K D+ + ++L+
Sbjct: 492 NTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALV 551
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--------DV 160
Y + + +F + +V+TW +I G +EA+ +F + ++
Sbjct: 552 DMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREI 611
Query: 161 KPNANTLVSVLSACSSLG 178
+PN T +++ ++ S G
Sbjct: 612 RPNEVTYIAIFASLSHSG 629
>gi|302818269|ref|XP_002990808.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
gi|300141369|gb|EFJ08081.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
Length = 484
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I +P + L+ Q+ A+ ++KM N TF A+ AC++ ++G
Sbjct: 18 IALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGIKANAITFVVAINACAMLGDPRRG 77
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H ++ G + NSL+H Y +D+ +A FN + DVVTW +IIS ++
Sbjct: 78 KALHDFLVPCGFFDSSLVGNSLIHMYGKCRDLDAAKSAFNELKKKDVVTWNSIISAYAQN 137
Query: 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
G KEA++++ +D P+ T V + AC+S S+ L +A+
Sbjct: 138 GRGKEALELYNDMDWTPDKITYVGAIEACAS--SQDLEQAVQ 177
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+ TF A+ C+ ++G IHA V+ G D+ I N+L++ Y + +A +F
Sbjct: 246 DRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLVNMYGKCGQVGTARGLF 305
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
+ +V DVVTW+++++ + G E +++F + +PN T + VL ACS LG
Sbjct: 306 DKMVVRDVVTWSSLLATYASNGHGMEGLELFRLMQQDYTEPNEVTFLGVLFACSHLG 362
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ + A+ LYN M P + T+ A++AC+ + ++ ++
Sbjct: 128 NSIISAYAQNGRGKEALELYNDMDWTP---DKITYVGAIEACASSQDLEQAVQT------ 178
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ + N+LL Y A +F S+ +V+TW I+ + G EA+ +
Sbjct: 179 -----DVVVCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYALQGEFGEALAL 233
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +VKP+ T V + C+ + G+ IHA + + + ++I+ N +++
Sbjct: 234 FQRLEAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLVN 290
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
A F + P++ +WT +I+ ++ G EA+ F + +K NA T V ++AC+
Sbjct: 10 EAWDCFARIALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGIKANAITFVVAINACA 69
Query: 176 SLGSRKLGKAIH 187
LG + GKA+H
Sbjct: 70 MLGDPRRGKALH 81
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +T+LK + S A+ + +M Y FT LK C + G EIH +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G D+F L + Y + + A ++F+ + D+V+W TI++G S+ G + A+
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221
Query: 153 DM---FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+M C ++KP+ T+VSVL A S+L +GK IH +++R+ ++ + + A++D
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ P+ A+ ++ KML+ + AL AC+ ++G IH ++
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + NSL+ Y K++ +A +F + +V+W +I G ++ G +A++
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + VKP+ T VSV++A + L K IH +R+ + N+ + A++D
Sbjct: 426 FSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVD 481
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N ++ Q+ P +A+ +++M + P ++ + + A+ S+ H H K IH
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITH-HAKW--IHGV 463
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V++ ++F+ +L+ Y I A IF+ + V TW +I G GF K A
Sbjct: 464 VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAA 523
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLG 178
+++F + +KPN T +SV+SACS G
Sbjct: 524 LELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/196 (22%), Positives = 94/196 (47%), Gaps = 5/196 (2%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+Q+N+ ++P+ ++ NT++ +Q+ + A+ + M + T L
Sbjct: 184 RQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVL 243
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
A S G EIH + ++ G + I +L+ Y + +A Q+F+ ++ +VV
Sbjct: 244 PAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVV 303
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+W ++I + KEA+ +F + VKP +++ L AC+ LG + G+ IH S
Sbjct: 304 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363
Query: 191 LRNLNENNIILDNAVL 206
+ + N+ + N+++
Sbjct: 364 VELGLDRNVSVVNSLI 379
>gi|115446475|ref|NP_001047017.1| Os02g0529900 [Oryza sativa Japonica Group]
gi|49388326|dbj|BAD25438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113536548|dbj|BAF08931.1| Os02g0529900 [Oryza sativa Japonica Group]
gi|125582364|gb|EAZ23295.1| hypothetical protein OsJ_06992 [Oryza sativa Japonica Group]
gi|215696993|dbj|BAG90987.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 787
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLL 108
A+ L +M+ P + + F+ AL+AC+ A + G ++HA K G++ D+F+ N L+
Sbjct: 88 ALDLLLRMVEWPLRPDAFVFSVALRACAAAGSLGVGRQVHAAAAKMGYVGADLFVANGLV 147
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y + + + A ++F+ + PD V+WT+++S ++ G +A+ +F + V +A
Sbjct: 148 TMYASCRSLGCAEKVFSGIAAPDSVSWTSMLSAYTENGCDTQALMLFLEMIHGGVSCDAY 207
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
TL L A SSLG +LG +H + +++ + L+N +++F
Sbjct: 208 TLSVALRAASSLGHVRLGYQLHCYMIKSGFVPSEFLENCLIEF 250
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 14 SFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSST---PQNAIPL--YNKMLNCPSSYN 65
+F +IH +I+ ++++ L+ + +T ++ +PL L+ +
Sbjct: 322 AFDYGREIHGYLIRAGLDSDKYVMSALMDMYVNWATLRKSRSMLPLRMLKYYLSVQGKLD 381
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+ +LK+C+ G +HA V+K+ D F+ +SL+ Y + AH +F+
Sbjct: 382 QFIVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAHILFS 441
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKL 182
P V W+ IISG G + AI +F + V+PN T SVL+AC +LG
Sbjct: 442 RTKDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALGDVVS 501
Query: 183 GKAIHAHSLRN 193
G IH++S+RN
Sbjct: 502 GMEIHSNSIRN 512
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P ++L T++ A+ L+ +M++ S + YT + AL+A S + G
Sbjct: 166 IAAPDSVSWTSMLSAYTENGCDTQALMLFLEMIHGGVSCDAYTLSVALRAASSLGHVRLG 225
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H ++IK G + F++N L+ FY +++ ++F+ + D+V+W +I +
Sbjct: 226 YQLHCYMIKSGFVPSEFLENCLIEFYGRCRELQLMQKVFDEMNAKDLVSWNIVIQCYADN 285
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+EA+ F + K + TL S+L + + G+ IH + +R +++ +
Sbjct: 286 LCDEEALVHFRDLMYKCAECDEYTLGSILHVITRRCAFDYGREIHGYLIRAGLDSDKYVM 345
Query: 203 NAVLD 207
+A++D
Sbjct: 346 SALMD 350
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 120 AHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
A Q F++++ D +V WT ++SG + G EA+D+ + ++P+A L AC
Sbjct: 55 ARQAFDAMLPRDRSLVAWTVLMSGYATHGPASEALDLLLRMVEWPLRPDAFVFSVALRAC 114
Query: 175 SSLGSRKLGKAIHAHSLR 192
++ GS +G+ +HA + +
Sbjct: 115 AAAGSLGVGRQVHAAAAK 132
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L +C +GL+ HA+++K G + + L+ Y + A + F + +
Sbjct: 590 LSSCGKKAHLPEGLQAHAYLMKRGLSSTGCMCDYLIDMYSGCGSLTHAFEAFRNTSGRNS 649
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+WT+II + G + AI +F + + PN+ +SVL AC+ +G
Sbjct: 650 SSWTSIIMASVENGCPETAIRLFVQMLRKEKSPNSLAFLSVLKACAEIG 698
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 39/240 (16%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLK-------------LLTQS 44
+ + LKS L +HA ++K P P ++++L+ L +++
Sbjct: 384 IVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAHILFSRT 443
Query: 45 STP------------------QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P + AI L+ M N +T+T L AC G+
Sbjct: 444 KDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALGDVVSGM 503
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
EIH++ I+ G+ + SL+ FY+ A ++ S+ + ++W T+ ++ G
Sbjct: 504 EIHSNSIRNGYGTSDSVLRSLISFYLREGQFNQALRLCLSLSNSE-ISWGTLFQEFAELG 562
Query: 147 FHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILD 202
H +++F I + T +LS+C G HA+ + R L+ + D
Sbjct: 563 DHLGILNLFHVIQRSGGVLDYPTACLILSSCGKKAHLPEGLQAHAYLMKRGLSSTGCMCD 622
>gi|15232344|ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis thaliana]
gi|332642896|gb|AEE76417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 564
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ +ALK CS + ++ L IH + I G ++ +++ L+ Y+ D+ A ++F+ +
Sbjct: 15 YLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRIS 74
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
DVV+WT +IS S+CG+H +A+ +F + DVK N T SVL +C LG K G
Sbjct: 75 KRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQ 134
Query: 186 IHAHSLRNLNENNIILDNAVL 206
IH + N+I+ +A+L
Sbjct: 135 IHGSVEKGNCAGNLIVRSALL 155
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DI 101
Q++ +A ++ M+ + + + LK C+ + G +IH +K + D+
Sbjct: 293 QNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDV 352
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
+ NSL+ Y +I A F + DV +WT++I+G + G ++AID++ ++
Sbjct: 353 ALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHE 412
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+KPN T +S+LSACS G +LG I+
Sbjct: 413 RIKPNDVTFLSLLSACSHTGQTELGWKIY 441
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQII--KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCP 61
LK + L KQ + HA+ + +I + +++ ++ ++ +A+ L+ +M
Sbjct: 49 LKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHRED 108
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
N +T+ LK+C ++G++IH V K ++ ++++LL Y + A
Sbjct: 109 VKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEAR 168
Query: 122 QIFNSVVFPDVVTWTTIISG 141
F+S+ D+V+W +I G
Sbjct: 169 LQFDSMKERDLVSWNAMIDG 188
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ T ++ + L+ ML + +TF L+A + + E+H IK
Sbjct: 183 NAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIK 242
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---CGFHKEA 151
G + SL++ YV + +A ++ D+++ T +I+G S+ C +A
Sbjct: 243 LGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNC--TSDA 300
Query: 152 IDMFCG-IDVKPNANTLV--SVLSACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVLD 207
D+F I +K + +V S+L C+++ S +G+ IH +L++ ++ L N+++D
Sbjct: 301 FDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLID 360
Query: 208 F 208
Sbjct: 361 M 361
>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 833
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ ++P A+ L+ +M + +HYTF KAC + G IH VI+
Sbjct: 95 NQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIR 154
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEA 151
G ++F+ N+++ Y K + A ++F+ + + D VTW +I+S S C A
Sbjct: 155 LGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVA 214
Query: 152 IDMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +F G + P+ +V++L C LG G+ +H +R+ ++ + NA++D
Sbjct: 215 VSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVD 274
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 45/168 (26%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--------------- 129
G ++H ++ G + D+F+ N+L+ Y + A+++F + F
Sbjct: 250 GRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQ 309
Query: 130 --------------------PDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANT 166
DVVTW+++ISG ++ GF EA+D+F CG +PN T
Sbjct: 310 NGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVT 369
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLR-------NLNENNIILDNAVLD 207
L+S+LSAC+S+G+ GK H +S++ N + +++ + NA++D
Sbjct: 370 LMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALID 417
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 16/174 (9%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY-------GHLHDIF 102
A+ ++ +M C N T L AC+ A G E H + +K+ D+
Sbjct: 351 AMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLA 410
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFC---G 157
+ N+L+ Y K + A +F+ + D VVTWT +I G ++ G A+ +F
Sbjct: 411 VINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFK 470
Query: 158 ID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR--NLNENNIILDNAVLD 207
ID + PN T+ VL AC+ L + K GK IHA+ LR ++ + + + N ++D
Sbjct: 471 IDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLID 524
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 43 QSSTPQNAIPLYNKML---NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
Q +A+ L+++M NC N +T + L AC+ A + G +IHA+V++ +
Sbjct: 454 QHGDANHALQLFSEMFKIDNCIVP-NDFTISCVLMACARLAALKFGKQIHAYVLRRSRID 512
Query: 100 D--IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+F+ N L+ Y D+ +A +F+S+ + V+WT++++G G ++A +F
Sbjct: 513 SDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDE 572
Query: 158 IDVKP---NANTLVSVLSACSSLG 178
+ + + T + VL ACS G
Sbjct: 573 MRKEALVLDGITFLVVLYACSHSG 596
>gi|125539724|gb|EAY86119.1| hypothetical protein OsI_07491 [Oryza sativa Indica Group]
Length = 787
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLL 108
A+ L +M+ P + + F+ AL+AC+ A + G ++HA K G++ D+F+ N L+
Sbjct: 88 ALDLLLRMVEWPLRPDAFVFSVALRACAAAGSLGVGRQVHAAAAKMGYVGADLFVANGLV 147
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN 165
Y + + + A ++F+ + PD V+WT+++S ++ G +A+ +F + V +A
Sbjct: 148 TMYASCRSLGCAEKVFSGIAAPDSVSWTSMLSAYTENGCDTQALMLFLEMIHGGVSCDAY 207
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
TL L A SSLG +LG +H + +++ + L+N +++F
Sbjct: 208 TLSVALRAASSLGHVRLGYQLHCYMIKSGFVPSEFLENCLIEF 250
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 14 SFKQLNQIHAQIIKI---PQPHILNTLLKLLTQSST---PQNAIPL--YNKMLNCPSSYN 65
+F +IH +I+ ++++ L+ + +T ++ +PL L+ +
Sbjct: 322 AFDYGREIHGYLIRAGLDSDKYVMSALMDMYVNWATLRKSRSMLPLRMLKYYLSVQGKLD 381
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+ +LK+C+ G +HA V+K+ D F+ +SL+ Y + AH +F+
Sbjct: 382 QFIVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAHILFS 441
Query: 126 SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKL 182
P V W+ IISG G + AI +F + V+PN T SVL+AC +LG
Sbjct: 442 RTKDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALGDVVS 501
Query: 183 GKAIHAHSLRN 193
G IH++S+RN
Sbjct: 502 GMEIHSNSIRN 512
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P ++L T++ A+ L+ +M++ S + YT + AL+A S + G
Sbjct: 166 IAAPDSVSWTSMLSAYTENGCDTQALMLFLEMIHGGVSCDAYTLSVALRAASSLGHVRLG 225
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++H ++IK G + F++N L+ FY +++ ++F+ + D+V+W +I +
Sbjct: 226 YQLHCYMIKSGFVPSEFLENCLIEFYGRCRELQLMQKVFDEMNAKDLVSWNIVIQCYADN 285
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+EA+ F + K + TL S+L + + G+ IH + +R +++ +
Sbjct: 286 LCDEEALVHFRDLMYKCAECDEYTLGSILHVITRRCAFDYGREIHGYLIRAGLDSDKYVM 345
Query: 203 NAVLD 207
+A++D
Sbjct: 346 SALMD 350
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L +C +GL+ HA+++K G + + L+ Y + A + F + +
Sbjct: 590 LSSCGKKAHLPEGLQAHAYLMKRGLSSTGCMCDYLIDMYSGCGSLTHAFEAFRNTSGRNS 649
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+WT+II + G + AI +F + + PN+ + +SVL AC+ +G
Sbjct: 650 SSWTSIIMASVENGCPETAIRLFVQMLRKEKSPNSLSFLSVLKACAEIG 698
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 120 AHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
A Q F++++ D +V WT ++SG + G EA+D+ + ++P+A L AC
Sbjct: 55 ARQAFDAMLPRDRSLVAWTVLMSGYATHGPASEALDLLLRMVEWPLRPDAFVFSVALRAC 114
Query: 175 SSLGSRKLGKAIHAHSLR 192
++ GS +G+ +HA + +
Sbjct: 115 AAAGSLGVGRQVHAAAAK 132
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 39/240 (16%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLK-------------LLTQS 44
+ + LKS L +HA ++K P P ++++L+ L +++
Sbjct: 384 IVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAHILFSRT 443
Query: 45 STP------------------QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86
P + AI L+ M N +T+T L AC G+
Sbjct: 444 KDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALGDVVSGM 503
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
EIH++ I+ G+ + SL+ FY+ A ++ S+ + ++W T+ ++ G
Sbjct: 504 EIHSNSIRNGYGTSDSVLRSLISFYLREGQFNQALRLCLSLSNSE-ISWGTLFQEFAELG 562
Query: 147 FHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSL-RNLNENNIILD 202
H +++F I + T +LS+C G HA+ + R L+ + D
Sbjct: 563 DHLGILNLFHVIQRSGGVLDYPTACLILSSCGKKAHLPEGLQAHAYLMKRGLSSTGCMCD 622
>gi|302822438|ref|XP_002992877.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
gi|300139325|gb|EFJ06068.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
Length = 630
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++ Q+ A+ L ++M + N YTF L A +KG ++H H+
Sbjct: 227 MISAYVQAGEQAEALELVSRMSKVEAIEPNPYTFATILGAVEGLGNLEKGRKVHRHLASR 286
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G ++ IQN+L+ Y + A ++F+S+ +V++WT++I+ ++ G +EA+++F
Sbjct: 287 GFDTNVVIQNALVTMYGKCGSLVEAQKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLF 346
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+DV+P+ + S L+AC+ LG+ G+ IH SL
Sbjct: 347 KRMDVEPSGVSFSSALNACALLGALDEGREIHHRSL 382
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
++++ + + + A+ LY +M++ N TF A+ C+ G IH ++
Sbjct: 124 SSIISVYAHAGWGEMAVVLYRRMISEGVEPNVVTFACAVGGCASVAGLADGRAIHQRILV 183
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L D +Q+SLL+ Y+ ++ + ++F + +V ++T +IS + G EA+++
Sbjct: 184 SKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGMKARNVRSYTAMISAYVQAGEQAEALEL 243
Query: 155 FCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ ++PN T ++L A LG+ + G+ +H H + N+++ NA++
Sbjct: 244 VSRMSKVEAIEPNPYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVIQNALV 299
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P + L+ +M + + T + AC+ A ++G ++H H+I G DI ++ +
Sbjct: 35 PLQVLELWGEMEERGIVMDKFIVTSLVAACTKLQALEEGRQLHEHLIIMGFRTDIPLETA 94
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
LL Y + A ++F + D+ TW++IIS + G+ + A+ ++ + V+PN
Sbjct: 95 LLQMYGKCGSLDDAKRVFEGMEIKDLFTWSSIISVYAHAGWGEMAVVLYRRMISEGVEPN 154
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T + C+S+ G+AIH L + + +L +++L+
Sbjct: 155 VVTFACAVGGCASVAGLADGRAIHQRILVSKVLQDDVLQDSLLN 198
Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ Q PQ A+ L+ +M PS +F+ AL AC+L A +G EIH +
Sbjct: 328 SMIAAYAQHGNPQEALNLFKRMDVEPSGV---SFSSALNACALLGALDEGREIHHRSLMM 384
Query: 96 GHLHDIFIQNSLLHFYVTVKDIF-------SAHQIFNSVVF-PDVVTWTTIISGLSKCGF 147
H L+ Y+ + D+ A ++ ++ + D V W T++SG C
Sbjct: 385 DHG-----VVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSG---CKH 436
Query: 148 H 148
H
Sbjct: 437 H 437
>gi|75274055|sp|Q9LT48.1|PP244_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g20730
gi|9294399|dbj|BAB02480.1| unnamed protein product [Arabidopsis thaliana]
gi|51971823|dbj|BAD44576.1| unknown protein [Arabidopsis thaliana]
Length = 565
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ +ALK CS + ++ L IH + I G ++ +++ L+ Y+ D+ A ++F+ +
Sbjct: 16 YLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRIS 75
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
DVV+WT +IS S+CG+H +A+ +F + DVK N T SVL +C LG K G
Sbjct: 76 KRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQ 135
Query: 186 IHAHSLRNLNENNIILDNAVL 206
IH + N+I+ +A+L
Sbjct: 136 IHGSVEKGNCAGNLIVRSALL 156
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DI 101
Q++ +A ++ M+ + + + LK C+ + G +IH +K + D+
Sbjct: 294 QNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDV 353
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
+ NSL+ Y +I A F + DV +WT++I+G + G ++AID++ ++
Sbjct: 354 ALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHE 413
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+KPN T +S+LSACS G +LG I+
Sbjct: 414 RIKPNDVTFLSLLSACSHTGQTELGWKIY 442
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQII--KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCP 61
LK + L KQ + HA+ + +I + +++ ++ ++ +A+ L+ +M
Sbjct: 50 LKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHRED 109
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
N +T+ LK+C ++G++IH V K ++ ++++LL Y + A
Sbjct: 110 VKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEAR 169
Query: 122 QIFNSVVFPDVVTWTTIISG 141
F+S+ D+V+W +I G
Sbjct: 170 LQFDSMKERDLVSWNAMIDG 189
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ T ++ + L+ ML + +TF L+A + + E+H IK
Sbjct: 184 NAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIK 243
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---CGFHKEA 151
G + SL++ YV + +A ++ D+++ T +I+G S+ C +A
Sbjct: 244 LGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNC--TSDA 301
Query: 152 IDMFCG-IDVKPNANTLV--SVLSACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVLD 207
D+F I +K + +V S+L C+++ S +G+ IH +L++ ++ L N+++D
Sbjct: 302 FDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLID 361
Query: 208 F 208
Sbjct: 362 M 362
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 97/188 (51%), Gaps = 11/188 (5%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+PQ ++ N ++ Q+ A L+ M + + T L A + + ++G
Sbjct: 303 MPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQG 362
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E+H ++++ D+F+ ++L+ Y +D+ A ++++ DVV +T+ISG
Sbjct: 363 KEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLN 422
Query: 146 GFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
G +EA+ MF C +KPNA T+ SVL C+S+ + LG+ IH + LRN E
Sbjct: 423 GMSEEALQMFRYLLEQC---IKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKC 479
Query: 200 ILDNAVLD 207
+++A++D
Sbjct: 480 YVESALMD 487
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I +T++ + + A+ ++ +L N T L C+ A G +IH +V
Sbjct: 411 IGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYV 470
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++ + +++++L+ Y + +H IF + D VTW ++IS S+ G +EA+
Sbjct: 471 LRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEAL 530
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D+F C +K N T+ + LSAC+SL + GK IH +++ + +I ++A++D
Sbjct: 531 DLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALID 588
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ PQ A+ L+ +M YN+ T + AL AC+ A G EIH IK
Sbjct: 514 NSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIK 573
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
DIF +++L+ Y ++ A ++F + + V+W +IIS G KE++ +
Sbjct: 574 GPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSL 633
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
G+ KP+ T ++++SAC+ G
Sbjct: 634 LHGMQEEGYKPDHVTFLALISACAHAG 660
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ A+ L+ M N T L C+ G ++H+ +K
Sbjct: 211 NVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVK 270
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + N+LL Y + + A ++F + D+VTW +ISG + G EA +
Sbjct: 271 CGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGL 330
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +P++ TLVS+L A + L K GK +H + +RN ++ L +A++D
Sbjct: 331 FYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVD 386
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
N L++ T + A+ Y KM + P+ S + +T +K+C+ A G +H
Sbjct: 108 NWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTA 167
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G +D+++ ++L+ Y + +A F+ + D V W ++ G K G A+
Sbjct: 168 RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAV 227
Query: 153 DMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + +PN TL LS C++ G +H+ +++ E + + N +L
Sbjct: 228 RLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLL 284
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSV-- 127
L+ C A GL+IHA + G L D + + LL YV + A +F+++
Sbjct: 39 LRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPR 98
Query: 128 -VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRK 181
+ W +I G + G H A+ + + P+A+TL V+ +C++LG+
Sbjct: 99 AAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMS 158
Query: 182 LGKAIH 187
LG+ +H
Sbjct: 159 LGRLVH 164
>gi|224128522|ref|XP_002320353.1| predicted protein [Populus trichocarpa]
gi|222861126|gb|EEE98668.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N+YTF K+ S + K +HAHVI+ GHL+DI++QNSLL Y + + ++F
Sbjct: 9 NNYTFPFLFKSLSDCRDYLKCQCVHAHVIRLGHLNDIYVQNSLLDVYASCGYMGLCREVF 68
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRK 181
+ + DVV+WT +I G + +A+ F + V PN T+V+ L AC S + +
Sbjct: 69 DEMSDRDVVSWTVLIMGYRNAKNYADALIAFEKMQYAGVVPNHVTMVNALGACGSFRAIE 128
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
+G IH RN + ++IL ++++
Sbjct: 129 MGVWIHDFISRNGWDLDVILGTSLVE 154
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
+A+ + KM NH T AL AC A + G+ IH + + G D+ + SL+
Sbjct: 94 DALIAFEKMQYAGVVPNHVTMVNALGACGSFRAIEMGVWIHDFISRNGWDLDVILGTSLV 153
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y+ I F S+ +V TW +I GL +EA+ F ++ + +
Sbjct: 154 EMYLKCGRIDEGLNAFRSMKEKNVFTWNVVIQGLGFAKSGQEAVWWFNRMEEEGFEADEV 213
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
TL +VL+AC G +G+ I + SL N N
Sbjct: 214 TLANVLNACIHSGLVDMGRQIFS-SLINGN 242
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + N YTF AL+ + G+ IH V+K H D+++ N+L+
Sbjct: 232 ALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIA 291
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + A ++F S++ D V+W T++SGL + + +A++ F + KP+ +
Sbjct: 292 MYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVS 351
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++++++A G+ GK +HA+++RN ++N+ + N ++D
Sbjct: 352 VLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVD 392
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL L Q+ +A+ + M N + + + A + KG E+HA+ I+
Sbjct: 318 NTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIR 377
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ I N+L+ Y + F + D+++WTTII+G ++ FH EAI++
Sbjct: 378 NGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINL 437
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F G+DV P + SVL ACS L SR + IH + + + +I+L NA+++
Sbjct: 438 FRKVQVKGMDVDP--MMIGSVLRACSGLKSRNFIREIHGYVFKR-DLADIMLQNAIVN 492
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ AI L+ K+ + L+ACS + EIH +V K
Sbjct: 420 TIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR 479
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
L DI +QN++++ Y V I A + F S+ D+V+WT++I+ G EA+++F
Sbjct: 480 -DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELF 538
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ +++P++ ++S LSA ++L S K GK IH +R
Sbjct: 539 YSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIR 578
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ S AI LY M + + TF LKAC + G EIH +K
Sbjct: 114 NALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVK 173
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAI 152
G+ +F+ N+L+ Y D+ A +F+ ++ D V+W +IIS G EA+
Sbjct: 174 CGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEAL 233
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + V N T V+ L KLG IH L++ + ++ + NA++
Sbjct: 234 SLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALI 290
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 15/170 (8%)
Query: 30 QPHILNTL----LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P +NTL LK QS T + PL PS H + L C A A +G
Sbjct: 12 KPISVNTLNKGTLKPAFQSLTLLSTHPLAT-----PSRLEH-AHSLLLDLCVAAKALPQG 65
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA ++K HL F+ L+ Y + A ++F+ + + +W ++
Sbjct: 66 QQLHALLLK-SHL-SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSS 123
Query: 146 GFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G + EAI+++ + V +A T SVL AC +LG +LG IH +++
Sbjct: 124 GKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVK 173
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ + P A+ L+ + + AL A + + +KG EIH +I+
Sbjct: 520 SMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK 579
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII--SGLSKCGFHKEAID 153
G + I +SL+ Y + ++ ++F+SV D++ WT++I +G+ CG +AI
Sbjct: 580 GFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCG--NKAIA 637
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+F + +V P+ T +++L ACS G GK
Sbjct: 638 LFKKMTDQNVIPDHITFLALLYACSHSGLMVEGK 671
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + P AI +M N TFT L AC+ G EIHA ++
Sbjct: 432 NAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVR 491
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+F+ NSL+ Y + SA +FN+ D V++ +I G S+ +++++
Sbjct: 492 IGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNL 550
Query: 155 FCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + + KP+ + V V+SAC++L + K GK +H +LRN +++ + N++LDF
Sbjct: 551 FSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDF 607
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 54 YNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113
YN+M+ + +TF LK CS + KG+E+H V K G D+++ N+LL Y
Sbjct: 147 YNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGN 206
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID----MFCGIDVKPNANTLVS 169
+ A ++F+ + DVV+W TII LS G + EA + M +KPN +++S
Sbjct: 207 CGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVIS 266
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+L ++L ++ + IH +S++ ++ + NA++D
Sbjct: 267 LLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVD 304
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L +A+ + M++ + N T + L + G EIH ++
Sbjct: 331 NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMR 390
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DIFI NSL+ Y A IF+++ ++V+W +I+ + EAI
Sbjct: 391 MGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRF 450
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ PNA T +VL AC+ LG GK IHA +R +++ + N+++D
Sbjct: 451 VIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLID 506
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ +++ ++ L+++M + +F + AC+ A ++G E+H ++
Sbjct: 532 NILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALR 591
Query: 95 ---YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
Y HL F+ NSLL FY I A ++FN ++F DV +W T+I G G + A
Sbjct: 592 NHLYSHL---FVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETA 648
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLG 178
I MF + V+ + + ++VLSACS G
Sbjct: 649 ISMFEAMRDDTVQYDLVSYIAVLSACSHGG 678
Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS---K 144
IH + +K G + N+L+ Y + + Q+FN V + V+W +II+GL+ +
Sbjct: 283 IHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGR 342
Query: 145 CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
C A M +PN+ T+ S+L L K GK IH S+R E +I + N+
Sbjct: 343 CWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANS 402
Query: 205 VLD 207
++D
Sbjct: 403 LID 405
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q A+ L+++ML +S N T T C+ + G A V +
Sbjct: 179 NSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSE 238
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L ++ + +L+ YV + I A + F+ + DVV W+T+I+G S G E++++
Sbjct: 239 E-DLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLEL 297
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + KPN TLV VLSAC+ LGS +LG+ I ++
Sbjct: 298 FERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSY 335
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 87/183 (47%), Gaps = 5/183 (2%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+ +++ + ++P+ ++ +T++ + + P ++ L+ +M N T L
Sbjct: 258 RAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
AC+ + + G +I +++ ++ ++L+ Y + A +F+ + V+
Sbjct: 318 SACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVI 377
Query: 134 TWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W ++I GL+ GF ++AI ++ G V+PN T +++L+AC+ G G A
Sbjct: 378 AWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEM 437
Query: 191 LRN 193
+N
Sbjct: 438 KKN 440
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV-------------------- 112
LK+C+L+ A +G + H H + G L D+F+Q +L+ FY
Sbjct: 85 LKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDP 144
Query: 113 -----------TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
D+ A ++F+S+ +W ++I+ + G +EA+ +F +
Sbjct: 145 IPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLRE 204
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
PNA T+ +V S C+ G + G+ A + + N+I+ A+++
Sbjct: 205 GASPNAITITTVFSICAKTGDLETGRRAKAW-VSEEDLQNVIVHTALMEM 253
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ L + ++AI LY +M+ N TF L AC+ A KG+ + K
Sbjct: 380 NSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKK 439
Query: 95 YGHLHDIFIQNS--LLHFYVTVKDIFSAHQ-IFNSVVFPDVVTWTTIISGLSKCGFHK-- 149
+++ ++ ++ A++ I + V P+ V WTT+ LS C H
Sbjct: 440 NKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTL---LSACRAHADV 496
Query: 150 EAIDMFCG--IDVKPNANTLVSVLS 172
E + G + ++PN++++ +LS
Sbjct: 497 ELAKLAAGKLVVLEPNSSSIYVLLS 521
>gi|147853495|emb|CAN82291.1| hypothetical protein VITISV_021279 [Vitis vinifera]
Length = 954
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L + ++ L+ +++ + + +F L + + G ++H +IK
Sbjct: 223 NTVISLFGNYGFSEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDLELGEQVHDLLIK 282
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + NSL++ YV I A ++F DVV+W T+I L+K + +++
Sbjct: 283 NGFDXEVSVLNSLINMYVKCSCIXLAEKMFELGCVRDVVSWNTMIGALAKSERPSKVLEL 342
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + V PN T VSV+++C++L G+ IHA +RN E+N+ + +A++DF
Sbjct: 343 FLKMSLDGVLPNETTFVSVINSCTNLQILVFGEYIHAKVIRNKIESNVFVGSALVDF 399
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ +P I+ N L+ ++ + L+ M ++YT L C+ G
Sbjct: 543 LEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYPDNYTVVSLLSVCTKLCNLALG 602
Query: 86 LEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
IH +IK D F+ N L+ Y I S+ +IFN ++ +++TWT +IS L
Sbjct: 603 SSIHGFIIKTDFKFCDTFVFNVLIDMYGKCGCIESSLKIFNKIIXRNIITWTALISALGV 662
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
G+ EA+ +F ++ KP+ LV+V SAC G L + H+
Sbjct: 663 NGYANEALKLFREMESLGFKPDGVALVAVFSACRHGGLIFLAGRLPEHT 711
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 1/140 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L +S P + L+ KM N TF + +C+ G IHA VI+
Sbjct: 324 NTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEYIHAKVIR 383
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS-KCGFHKEAID 153
++F+ ++L+ FY ++ SAH F+ + +VV W +I G S KC +
Sbjct: 384 NKIESNVFVGSALVDFYAKCDNLESAHCCFDEIDEKNVVCWNALILGYSNKCFSSVSLLK 443
Query: 154 MFCGIDVKPNANTLVSVLSA 173
+ PN + + L +
Sbjct: 444 RMLQLGYXPNEXSFSAALKS 463
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 39/206 (18%)
Query: 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
L H +I + +++ +L S+ +++ L +ML N +F+ ALK+ S
Sbjct: 406 LESAHCCFDEIDEKNVVCWNALILGYSNKCFSSVSLLKRMLQLGYXPNEXSFSAALKS-S 464
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT---VKD--IFSA------------ 120
L Q ++H +++ G+ + ++ ++L+ Y + D IF A
Sbjct: 465 LVFELQ---QLHCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLVGPSN 521
Query: 121 ---------------HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
+F+ + PD+V+W +I+ ++ G +KE ++F + + P
Sbjct: 522 AIAGVYNKIGQYHXTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYP 581
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHA 188
+ T+VS+LS C+ L + LG +IH
Sbjct: 582 DNYTVVSLLSVCTKLCNLALGSSIHG 607
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 86/178 (48%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ +++ + + A L++++ +TF L SL + +G ++ A ++K
Sbjct: 123 NTIIGGYSRNGSVEEAWNLFSELRRYGFEPTQHTFAGLLSCASLKLS--QGFQLQAQMVK 180
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G H D + +LL + I F + ++VTW T+IS GF +E++
Sbjct: 181 SGLFHADPYAGTALLSLFRRNGCIDEVVCAFEEMPLKNLVTWNTVISLFGNYGFSEESMF 240
Query: 154 MFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + ++ A + + VLS +S +LG+ +H ++N + + + N++++
Sbjct: 241 LFREL-MRTGAGLSECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDXEVSVLNSLIN 297
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 75 ACSLAHAHQKGLEIHAHVIKYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
AC A ++ +HA + IF+ N+L+ YV ++ +A ++F + +V
Sbjct: 60 ACKTAPTLKETKPLHALTVTMASNSTQPIFLYNNLISLYVLQGELSTAREVFGEMTQRNV 119
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177
V++ TII G S+ G +EA ++F + +P +T +LS C+SL
Sbjct: 120 VSYNTIIGGYSRNGSVEEAWNLFSELRRYGFEPTQHTFAGLLS-CASL 166
>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
Length = 656
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 94/183 (51%), Gaps = 4/183 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N +++ + P +A+ Y ML+ + + +TF LK C+ A A +G
Sbjct: 83 PGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAA 142
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA VIK G D++ NSL+ Y + + A ++F+ + D+V+W T++ G G
Sbjct: 143 HAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMG 202
Query: 149 KEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
A+ +M + V ++ +++ L+AC + LG+ IH +++R+ E ++ + +
Sbjct: 203 ALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTS 262
Query: 205 VLD 207
++D
Sbjct: 263 LVD 265
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
Q AI L+ ++LN P +++T T + A L + ++ ++H++++K G+ I N++
Sbjct: 406 QEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAV 465
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPN 163
+H Y +I ++ +IF+ + DV++W TII G + G K A++MF C ++PN
Sbjct: 466 MHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCS-GMEPN 524
Query: 164 ANTLVSVLSACSSLG 178
+T VSVL+ACS G
Sbjct: 525 ESTFVSVLTACSVSG 539
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC L A G EIH + I++G D+ + SL+ Y ++F A +F +
Sbjct: 228 ALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRT 287
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHA 188
VVTW +I G + +A D F + V + T +++L+AC+ S G+++HA
Sbjct: 288 VVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHA 347
Query: 189 HSLRNLNENNIILDNAVLD 207
+ +R +++L+ A+L+
Sbjct: 348 YVVRRHFLPHVVLETALLE 366
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC+ + G +HA+V++ L + ++ +LL Y V + S+ +IF +
Sbjct: 325 TAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQI 384
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V+W +I+ ++EAI +F + + P+ T+ +V+ A LGS + K
Sbjct: 385 TDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCK 444
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
+H++ ++ ++ ++ NAV+
Sbjct: 445 QMHSYIVKLGYGDSTLIMNAVM 466
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 94/183 (51%), Gaps = 4/183 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P + N +++ + P +A+ Y ML+ + + +TF LK C+ A A +G
Sbjct: 83 PGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAA 142
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA VIK G D++ NSL+ Y + + A ++F+ + D+V+W T++ G G
Sbjct: 143 HAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMG 202
Query: 149 KEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
A+ +M + V ++ +++ L+AC + LG+ IH +++R+ E ++ + +
Sbjct: 203 ALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTS 262
Query: 205 VLD 207
++D
Sbjct: 263 LVD 265
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
Q AI L+ ++LN P +++T T + A L + ++ ++H++++K G+ I N++
Sbjct: 406 QEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAV 465
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF----CGIDVKPN 163
+H Y +I ++ +IF+ + DV++W TII G + G K A++MF C ++PN
Sbjct: 466 MHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCS-GMEPN 524
Query: 164 ANTLVSVLSACSSLG 178
+T VSVL+ACS G
Sbjct: 525 ESTFVSVLTACSVSG 539
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC L A G EIH + I++G D+ + SL+ Y ++F A +F +
Sbjct: 228 ALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRT 287
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHA 188
VVTW +I G + +A D F + V + T +++L+AC+ S G+++HA
Sbjct: 288 VVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHA 347
Query: 189 HSLRNLNENNIILDNAVLD 207
+ +R +++L+ A+L+
Sbjct: 348 YVVRRHFLPHVVLETALLE 366
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L AC+ + G +HA+V++ L + ++ +LL Y V + S+ +IF +
Sbjct: 325 TAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQI 384
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V+W +I+ ++EAI +F + + P+ T+ +V+ A LGS + K
Sbjct: 385 TDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCK 444
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
+H++ ++ ++ ++ NAV+
Sbjct: 445 QMHSYIVKLGYGDSTLIMNAVM 466
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 13/172 (7%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKM--LNCPSSYNHYTFTQALKACSLAHAH----QKG 85
++ N L + L + + LY +M + PS + +T+T LKAC ++ QKG
Sbjct: 145 YVWNALFRALAMVGCGKELLDLYVQMNWIGIPS--DRFTYTFVLKACVVSELSVSPLQKG 202
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
EIHAH++++G+ +I + +LL Y + A+ +F ++ + V+W+ +I+ +K
Sbjct: 203 KEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKN 262
Query: 146 GFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+A+++F + D PN+ T+V+VL AC+ L + + GK IH + LR
Sbjct: 263 EMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILR 314
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ L + + AI L L C + TF + +C+ ++ GL++H ++
Sbjct: 51 NQLIQSLCKGGNLKQAIHL----LCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVS 106
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ L++ Y + I A ++F+ + W + L+ G KE +D+
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDL 166
Query: 155 FCG---IDVKPNANTLVSVLSACS----SLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ I + + T VL AC S+ + GK IHAH LR+ E NI + +LD
Sbjct: 167 YVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLD 226
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ ++ ++ P A+ L+ M+ S N T L+AC+ A ++G IH ++
Sbjct: 253 SAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYI 312
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
++ G + + N+L+ Y +I ++F+++ DVV+W ++IS GF K+AI
Sbjct: 313 LRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAI 372
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
+F + P+ + ++VL ACS G + GK +
Sbjct: 373 QIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKIL 409
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 46 TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
P + L+ +M+ N +T T AL C + + G ++++ IK+G+ ++ ++N
Sbjct: 249 APVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRN 308
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG-----------LSKCGFHKEAIDM 154
SLL+ Y+ I AH++FN + +VTW +I+G LS C EA+ +
Sbjct: 309 SLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKL 368
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F ++ +KP+ TL SVLS CS + + + G+ IHA +++ +++I+ +++
Sbjct: 369 FSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLI 423
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 94/174 (54%), Gaps = 3/174 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
TL+ Q+S P++AI ++ +ML S + YT + L ACS + + G + HA++IKY
Sbjct: 138 TLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKY 197
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D + ++L Y + A + F+ + +V++WT+ +S + G + + +F
Sbjct: 198 HVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLF 257
Query: 156 C---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+D+KPN TL S LS C + S +LG +++ ++ E+N+ + N++L
Sbjct: 258 VEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLL 311
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 22 HAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81
HAQ++++ + + L+ A+ L++K+ + +T + L CS A
Sbjct: 345 HAQMMELTKDN--------LSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLA 396
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
++G +IHA IK G L D+ + SL+ Y I A + F + ++ WT++I+G
Sbjct: 397 IEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITG 456
Query: 142 LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
S+ G ++A+ +F + V+PNA T V VLSACS G
Sbjct: 457 FSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAG 496
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ C ++ + +H HV+K G + F+ + L++ Y ++ A ++F++++ +V
Sbjct: 74 LQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNV 133
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V WTT++ G + K AI +F + P+ TL +VL ACSSL S KLG HA+
Sbjct: 134 VAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAY 193
Query: 190 SLR 192
++
Sbjct: 194 IIK 196
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 43/208 (20%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKML----NCPSSYN-----HYTFTQALKACSLA 79
P ++ N +++ T +S I Y +ML N +S + +TF +KAC+
Sbjct: 49 PNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARL 108
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV------------ 127
H G ++HA K+G + +N+L+ Y ++ AH +F+ +
Sbjct: 109 GLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGII 168
Query: 128 --------------VFPD-----VVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
+F + +V+WT IISG ++ G + +A+D+F + ++P+
Sbjct: 169 SGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEA 228
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+++SVL AC+ LG+ + GK IH RN
Sbjct: 229 SIISVLPACAKLGALETGKWIHMFCARN 256
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
Q+ + A ++P I++ ++ T+ + +A+ ++ +M + + L
Sbjct: 176 QMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLP 235
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ A + G IH + G L I N+L+ Y I A Q+F+ + DV++
Sbjct: 236 ACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVIS 295
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
W+T+I GL+ G +EAI +F + ++KPN T V +LSAC+ G + G
Sbjct: 296 WSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEG 347
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA VIKY F+ ++ +D+ A +F V+ P+ + +I + +
Sbjct: 8 HALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMY 67
Query: 149 KEAIDMFCGI-----------D-VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
ID + + D + P+ T V+ AC+ LG LGK +HA + +
Sbjct: 68 SLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKK 127
Query: 197 NNIILDNAVLDF 208
+++I +NA++D
Sbjct: 128 SHLITENALIDM 139
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
++IP + N ++K QS P A+ LY +ML S YTF +KAC L +
Sbjct: 40 MEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFA 99
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H HV + G +F+Q SL+ FY ++ I + ++F+ + DV WTT++SGL +
Sbjct: 100 EAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRV 159
Query: 146 GFHKEAIDMFCGIDVKPNAN 165
G A +F D+ P+ N
Sbjct: 160 GDMSSAGRLF---DMMPDRN 176
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +Q+ + A+ ++N+M S + T + AC+ A G EIH +++++
Sbjct: 213 TMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQH 272
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D++I ++L+ Y + + +F + ++ W ++I GL+ G+ +EA+ MF
Sbjct: 273 GFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMF 332
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
++ +KPN T VSVLSAC+ G + G+ A R+
Sbjct: 333 DKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRD 373
Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
++A ++K D ++ N + T + A + + P+V + +I G +
Sbjct: 1 MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+A++++ + +V P + T S++ AC + + +A+H H RN ++++ + +
Sbjct: 61 PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120
Query: 205 VLDF 208
++DF
Sbjct: 121 LVDF 124
>gi|255543567|ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547857|gb|EEF49349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A L++ M+ ++ TF L C+ ++ ++H HV+K GH + I NSL+
Sbjct: 126 EAFKLFSNMIRDGKKPDYVTFATLLSGCNDPEMTKELFQVHTHVVKLGHGSAVIICNSLV 185
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
Y + + AH+IF +V D VT+ +I+G K G +++AI +F + +P+
Sbjct: 186 DSYCKMHRLDLAHRIFKEMVERDSVTYNALITGYGKEGLNEDAIRLFTQMQNLGFEPSDF 245
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T +VL AC L G+ IH ++++ N+ + N++LDF
Sbjct: 246 TFQAVLCACIGLDDIIFGQQIHGYAVKMGLVWNVFVGNSLLDF 288
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + ++AI L+ +M N + +TF L AC G +IH + +K
Sbjct: 213 NALITGYGKEGLNEDAIRLFTQMQNLGFEPSDFTFQAVLCACIGLDDIIFGQQIHGYAVK 272
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++F+ NSLL FY + A ++F+ + D V++ +I+ S G ++E+ID+
Sbjct: 273 MGLVWNVFVGNSLLDFYSKHDCVNDAWKLFSKMPELDGVSYNVMITAYSWIGQYRESIDL 332
Query: 155 FCGIDVKPNANT---LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++LS + ++G+ +H+H++ + +++ N+++D
Sbjct: 333 FRELQFTKFERRNFPFATMLSIAGNTLDLQMGQQLHSHAIVTGADLEVLVANSLVD 388
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ +I L+ ++ ++ F L Q G ++H+H I G ++ + NSL
Sbjct: 327 RESIDLFRELQFTKFERRNFPFATMLSIAGNTLDLQMGQQLHSHAIVTGADLEVLVANSL 386
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y A +IF + V WT +IS + G +E + +F + +V +
Sbjct: 387 VDMYAKCGRSEYAERIFVKLSSKSTVPWTALISANVQKGLLEEGLKLFNEMRRTNVSADQ 446
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T SVL A ++L S LGK +H++ +R+ +N+ +A++D
Sbjct: 447 ATFASVLKASANLASISLGKQLHSYLIRSGFWSNVYSGSALVD 489
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 54/113 (47%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q + + L+N+M S + TF LKA + + G ++H+++I+ G +++
Sbjct: 423 QKGLLEEGLKLFNEMRRTNVSADQATFASVLKASANLASISLGKQLHSYLIRSGFWSNVY 482
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
++L+ Y + A + F + +V++W +IS ++ G + + F
Sbjct: 483 SGSALVDMYAKCGSVKEAIRTFKEMPGRNVISWNALISAYAQNGDGEATLKSF 535
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
N ++ YV +++ A ++F+S+V VTWT +I G + EA +F + K
Sbjct: 81 NMMILGYVKERNLSIARELFDSMVDRTAVTWTILIGGYCQFDQFSEAFKLFSNMIRDGKK 140
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ T ++LS C+ K +H H ++ + + +I+ N+++D
Sbjct: 141 PDYVTFATLLSGCNDPEMTKELFQVHTHVVKLGHGSAVIICNSLVD 186
>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
Length = 677
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ + P A+ +Y++M S + ++AC + G +H +++
Sbjct: 177 STMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLR 236
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D+ SL+ Y + A Q+F + + + VTW+ +ISG ++ G EA+D+
Sbjct: 237 HCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDL 296
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++P + LVS L AC+S+G KLGK+IH LR L E IL AVLD
Sbjct: 297 FRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRL-EWQCILGTAVLD 351
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHV 92
N LL +++ P A+ ++ + PSS N TFT L AC+ +
Sbjct: 77 NGLLSAHSRAGAPGAALRVFRAL---PSSARPNSTTFTLTLTACARLGDLDAAESVRVRA 133
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G+ HD+F+ ++LLH Y + A ++F+ + D V W+T+++G G EA+
Sbjct: 134 FAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEAL 193
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
M+ + V + +V V+ AC S G+ ++G ++H LR+ +++ +++
Sbjct: 194 AMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLV 250
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+ AL AC+ + G IH +++ I + ++L Y + SA ++FN
Sbjct: 310 WALVSALLACASVGFLKLGKSIHGFILRRLEWQCI-LGTAVLDMYSKCGSLESARKLFNK 368
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+ D+V W II+ G +A+ +F ++ +KP+ T S+LSA S G + G
Sbjct: 369 LSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEG 428
Query: 184 K 184
K
Sbjct: 429 K 429
>gi|255566014|ref|XP_002523995.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536722|gb|EEF38363.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 212
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
YTF + AC+ + G + HV++ G D++I N+L+ Y D+ A +F
Sbjct: 11 YTFPSVINACAALGDFEIGNVVQNHVLEIGFGFDLYIGNALVDMYARFGDLVKARNVFEE 70
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLG 183
+ D+V+W ++ISG S G+ EA++++ + + KP+ TL SVL AC L + K G
Sbjct: 71 MTHRDIVSWNSLISGYSANGYWDEALEIYYELRIAGLKPDNFTLSSVLPACGGLLAVKEG 130
Query: 184 KAIHAHSLRNLNEN-NIILDNAVL 206
+ IH + L N ++I+ N +L
Sbjct: 131 EVIHGL-VEKLGMNIDVIMSNGLL 153
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 11/178 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
LL+ +S+ + A+ Y M+ ++Y F LKA + + G +IHAHV K+G
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 97 H-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK--EAID 153
+ + + + N+L++ Y D + +++F+ + + V+W ++IS L C F K A++
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL--CSFEKWEMALE 185
Query: 154 MF-CGID--VKPNANTLVSVLSACSSLGSRK---LGKAIHAHSLRNLNENNIILDNAV 205
F C +D V+P++ TLVSV++ACS+L + +GK +HA+ LR N+ I++ V
Sbjct: 186 AFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 14/157 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + AC + A + IH V+K G D F+QN+L+ Y + I A +IF
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--------------CGIDVKPNANTLVSV 170
+ D+VTW T+I+G H++A+ + + +KPN+ TL+++
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 523
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
L +C++L + GK IHA++++N ++ + +A++D
Sbjct: 524 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT+L L Q+ A+ +M+ + +T + L ACS + G E+HA+ +K
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G L + F+ ++L+ Y K + S ++F+ + + W +I+G S+ KEA+
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 390
Query: 154 MFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F G++ + N+ T+ V+ AC G+ +AIH ++ + + + N ++D
Sbjct: 391 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMD 448
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS---LAHAHQKGLEIHAH 91
N+L+ L + A+ + ML+ + +T + ACS + G ++HA+
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ G L+ FI N+L+ Y + + S+ + S D+VTW T++S L + EA
Sbjct: 228 GLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEA 286
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNII 200
++ + V+P+ T+ SVL ACS L + GK +HA++L+N L+EN+ +
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-----------NHYTFTQALKACSLAHAHQ 83
NT++ S ++A+ L +KM N N T L +C+ A
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG EIHA+ IK D+ + ++L+ Y + + ++F+ + +V+TW II
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594
Query: 144 KCGFHKEAID---MFCGIDVKPNANTLVSVLSACSSLG 178
G +EAID M VKPN T +SV +ACS G
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 11/178 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
LL+ +S+ + A+ Y M+ ++Y F LKA + + G +IHAHV K+G
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 97 H-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK--EAID 153
+ + + + N+L++ Y D + +++F+ + + V+W ++IS L C F K A++
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL--CSFEKWEMALE 185
Query: 154 MF-CGID--VKPNANTLVSVLSACSSLGSRK---LGKAIHAHSLRNLNENNIILDNAV 205
F C +D V+P++ TLVSV++ACS+L + +GK +HA+ LR N+ I++ V
Sbjct: 186 AFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 14/157 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + AC + A + IH V+K G D F+QN+L+ Y + I A +IF
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--------------CGIDVKPNANTLVSV 170
+ D+VTW T+I+G H++A+ + + +KPN+ TL+++
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 523
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
L +C++L + GK IHA++++N ++ + +A++D
Sbjct: 524 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT+L L Q+ A+ +M+ + +T + L ACS + G E+HA+ +K
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G L + F+ ++L+ Y K + S ++F+ + + W +I+G S+ KEA+
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 390
Query: 154 MFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F G++ + N+ T+ V+ AC G+ +AIH ++ + + + N ++D
Sbjct: 391 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMD 448
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS---LAHAHQKGLEIHAH 91
N+L+ L + A+ + ML+ + +T + ACS + G ++HA+
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ G L+ FI N+L+ Y + + S+ + S D+VTW T++S L + EA
Sbjct: 228 GLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEA 286
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNII 200
++ + V+P+ T+ SVL ACS L + GK +HA++L+N L+EN+ +
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-----------NHYTFTQALKACSLAHAHQ 83
NT++ S ++A+ L +KM N N T L +C+ A
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG EIHA+ IK D+ + ++L+ Y + + ++F+ + +V+TW II
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594
Query: 144 KCGFHKEAID---MFCGIDVKPNANTLVSVLSACSSLG 178
G +EAID M VKPN T +SV +ACS G
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 11/189 (5%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHAH 82
+IP ++++ ++L Q+ + + L+NKM N P S YT + ACS
Sbjct: 192 RIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPS--EYTIATVITACSALIGL 249
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+G +H VIK G + + FI +LL YV ++ A +F+ + + D+V WTT+I G
Sbjct: 250 HQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGY 309
Query: 143 SKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENN 198
++ G +A+ +F ++ PN+ T+ +VLSA + L LG++IH +++ L E
Sbjct: 310 TQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYT 369
Query: 199 IILDNAVLD 207
+++ NA++D
Sbjct: 370 VVV-NALVD 377
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKG 85
P + +L L Q+ A+ L+ M CP + + + + ALKAC + + G
Sbjct: 93 PDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYGYG 152
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H +K G D F+ NSL+ Y D+ A ++F + +VV+WT+++SG +
Sbjct: 153 TRLHCDAVKVGGA-DGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQN 211
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
GF + + +F + +V P+ T+ +V++ACS+L G+ +H ++ +N +
Sbjct: 212 GFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFIS 271
Query: 203 NAVLD 207
A+LD
Sbjct: 272 AALLD 276
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 7/178 (3%)
Query: 36 TLLKLLTQSSTPQNAIPLY--NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
T++ TQ+ P +A+ L+ K N N T L A + G IH +
Sbjct: 304 TMIVGYTQNGNPLDALRLFLDKKFANIVP--NSVTIATVLSASAQLRDLSLGRSIHGIAV 361
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + + N+L+ Y + + A++IF S+ DVV W +++SG ++ +A+
Sbjct: 362 KLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALM 421
Query: 154 MFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+F + +K P+A ++V LSA LG +GK+ H +++++ +NI + A+L+
Sbjct: 422 LFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNL 479
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N++L +++ +A+ L+ +M L PS + + AL A G H + +
Sbjct: 404 NSMLSGYAENNMCNDALMLFKQMSLKGPSP-DAISVVHALSASVCLGDLLIGKSFHGYAV 462
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K+ L +I++ +LL+ Y D+ SA ++F+ + + VTW +I G G +ID
Sbjct: 463 KHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSID 522
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + V PN S+LS CS G
Sbjct: 523 LFGEMLKDGVHPNDVAFTSILSTCSHTG 550
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 4/187 (2%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++ P N L+ ++ P+ I + M + + +TF+ L C+ +
Sbjct: 161 VMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWR 220
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+++H +IK FI N ++ Y I A ++F + D+++W T+++
Sbjct: 221 GMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCF 280
Query: 145 CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
C H+ A+ DM VKP+ T VL+AC+ L S + GK IH H +R ++
Sbjct: 281 CKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVG 340
Query: 201 LDNAVLD 207
+ NA+++
Sbjct: 341 VSNALVN 347
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%)
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ A GL +HA +K G L DI + N +++ Y ++ A ++F+ + ++V+W
Sbjct: 13 CAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSW 72
Query: 136 TTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ IISG + G A+++F + + PN SV+SAC+SL + G +HA SL+
Sbjct: 73 SAIISGYDQTGQPLLALNLFSQMRIVPNEYVFASVISACASLTALSQGLQVHAQSLK 129
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
NTL+ + A+ ++ ML+ C + +TF L AC+ + + G +IH H+I
Sbjct: 272 NTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLI 331
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ D+ + N+L++ Y I +++ +F ++V+W TII+ G A++
Sbjct: 332 RTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALE 391
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGK 184
F + + P++ T V +L+AC+ G + G+
Sbjct: 392 HFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQ 425
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 6/167 (3%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ P A+ L+++M P N Y F + AC+ A +GL++HA +K G + F
Sbjct: 81 QTGQPLLALNLFSQMRIVP---NEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSF 137
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK- 161
+ N+L+ Y+ A + N + P+ V++ +I+G + ++ I+ F + K
Sbjct: 138 VSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKG 197
Query: 162 --PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
P+ T +L C+S G +H ++ E++ + N ++
Sbjct: 198 FAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVII 244
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q A+ L+++ML +S N T T C+ + G A V +
Sbjct: 179 NSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSE 238
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L ++ + +L+ YV + I A + F+ + DVV W+T+I+G S G E++++
Sbjct: 239 E-DLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLEL 297
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
F + KPN TLV VLSAC+ LGS +LG+ I ++
Sbjct: 298 FERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSY 335
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 87/183 (47%), Gaps = 5/183 (2%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+ +++ + ++P+ ++ +T++ + + P ++ L+ +M N T L
Sbjct: 258 RAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
AC+ + + G +I +++ ++ ++L+ Y + A +F+ + V+
Sbjct: 318 SACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVI 377
Query: 134 TWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W ++I GL+ GF ++AI ++ G V+PN T +++L+AC+ G G A
Sbjct: 378 AWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEM 437
Query: 191 LRN 193
+N
Sbjct: 438 KKN 440
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV-------------------- 112
LK+C+L+ A +G + H H + G L D+F+Q +L+ FY
Sbjct: 85 LKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDP 144
Query: 113 -----------TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
D+ A ++F+S+ +W ++I+ + G +EA+ +F +
Sbjct: 145 IPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLRE 204
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
PNA T+ +V S C+ G + G+ A + + N+I+ A+++
Sbjct: 205 GASPNAITITTVFSICAKTGDLETGRRAKAW-VSEEDLQNVIVHTALMEM 253
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++++ L + ++AI LY +M+ N TF L AC+ A KG+ + K
Sbjct: 380 NSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKK 439
Query: 95 YGHLHDIFIQNS--LLHFYVTVKDIFSAHQ-IFNSVVFPDVVTWTTIISGLSKCGFHK-- 149
+++ ++ ++ A++ I + V P+ V WTT+ LS C H
Sbjct: 440 NKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTL---LSACRAHADV 496
Query: 150 EAIDMFCG--IDVKPNANTLVSVLS 172
E + G + ++PN++++ +LS
Sbjct: 497 ELAKLAAGKLVVLEPNSSSIYVLLS 521
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Query: 27 KIPQPHIL---NTLLKLLTQSST-PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+IP P + NTLL+ +SS A + +ML + + YTF LKAC+ A A
Sbjct: 80 RIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAG 139
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD-VVTWTTIISG 141
++G + H +K G ++ +L++ Y D SA +F V D VV++ +I+
Sbjct: 140 EEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITA 199
Query: 142 LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ EA+ +F + +KP + T+ SVLSAC+ LG+ +LG+ IH + + ++
Sbjct: 200 AVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSL 259
Query: 199 IILDNAVLDF 208
+ ++ A++D
Sbjct: 260 VKVNTALIDM 269
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +SS P A+ L+ +M T T L AC+L A + G IH +V K
Sbjct: 194 NAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRK 253
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + +L+ Y + A +F + D W+ +I + + +EAI +
Sbjct: 254 AGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANHSYGREAISL 313
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + ++P+A T + VL ACS G
Sbjct: 314 FEEMKKQGIRPDAVTFLGVLYACSHSG 340
>gi|297823557|ref|XP_002879661.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325500|gb|EFH55920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
++ H ++P ++++ ++ Q + LY++M N S N YTFT L
Sbjct: 170 EVENAHKVFAEMPDNNVVSWTAMISGFAQEWRVDICMKLYSEMRNSTSDPNDYTFTALLS 229
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ + A +G +H ++ G + I NSL+ Y D+ A +IF+ DVV+
Sbjct: 230 ACTGSGALGQGRSVHCQTLQMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVS 289
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W ++I+G ++ G +AI++F + +KP+A T + +LS+C R G I
Sbjct: 290 WNSMIAGYAQYGLATQAIELFELMMPKSGIKPDAITYLGLLSSC-----RHAGLVIEGRK 344
Query: 191 LRNL 194
NL
Sbjct: 345 FFNL 348
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
S++ Y + A+++C + G H +K G + D+++ +SL+ Y ++ +AH+
Sbjct: 117 SFDAYGLSSAVRSCGSNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAHK 176
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
+F + +VV+WT +ISG ++ + ++ + PN T ++LSAC+ G+
Sbjct: 177 VFAEMPDNNVVSWTAMISGFAQEWRVDICMKLYSEMRNSTSDPNDYTFTALLSACTGSGA 236
Query: 180 RKLGKAIHAHSLR 192
G+++H +L+
Sbjct: 237 LGQGRSVHCQTLQ 249
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Query: 47 PQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105
P A+ LY M C + + N +T + L A + + G EIH ++++ G D + +
Sbjct: 193 PHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWS 252
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKP 162
+L Y I A IF+ +V DVVTWT +I + G +E ++F + +KP
Sbjct: 253 ALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKP 312
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
N T VL+AC+ LG +GK +H H R
Sbjct: 313 NDFTFAGVLNACADLGVEGIGKQVHGHMTR 342
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
+ + L+ ++L N +TF L AC+ G ++H H+ + F
Sbjct: 291 EDGRREEGFELFAELLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSF 350
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGID 159
++L+H Y ++ +A ++F + PD+V+WT++I+G ++ G EA+ F
Sbjct: 351 AASALVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSG 410
Query: 160 VKPNANTLVSVLSACSSLG 178
+P+ T V VLSAC+ G
Sbjct: 411 TRPDHITFVGVLSACAHAG 429
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 39/205 (19%)
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ LL + + + AI + N+ ++ PS ++ +++C A + G ++H H+ G
Sbjct: 56 IALLCEQNRLKEAIQVLNQ-IDRPSPS---IYSSLIQSCLKNRALEVGKKVHDHIKLSGF 111
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ + I N LL Y D+ A ++F + D+ +W +ISG +K G KEA +F
Sbjct: 112 IPGLVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMGLLKEARKLFDT 171
Query: 158 IDVKPN------------------ANTLVSVLSACSSLGSRK-----------------L 182
+ + N A L ++ C +L S K +
Sbjct: 172 MPERDNFSWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRI 231
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
GK IH + +R +++ ++ +A+ D
Sbjct: 232 GKEIHGYIMRTGLDSDEVVWSALSD 256
>gi|449441630|ref|XP_004138585.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Cucumis sativus]
Length = 600
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
Query: 43 QSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
Q + A+ L+ +M CP + TF L +C + +++H+ +IK G
Sbjct: 287 QHEYGKEAVKLFRRMFRKDYCP---DELTFASVLSSCGFTSGASELMQVHSCLIKLGFEA 343
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---C 156
+ I N L++ Y I +A Q F + PD+VTWT+II GL+ CG K+A+ +F
Sbjct: 344 FLSINNGLIYAYSKCGIIAAALQCFRLIAEPDLVTWTSIICGLALCGLEKDAVKLFDKML 403
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLG 183
++P+ + VLSACS G +G
Sbjct: 404 SYGIRPDKIAFLGVLSACSHGGFVSMG 430
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N +L +S + AI ++ M + +TF+ L +C + + G ++H +
Sbjct: 176 LWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSSCKYKGSGELGKQLHCLL 235
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
IK DI + +SL++ Y +++ A ++F+ + + V+WTT+I G + + KEA+
Sbjct: 236 IKQSFDLDILVASSLVNVYTKNDNLYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAV 295
Query: 153 DMFCGI---DVKPNANTLVSVLSACS 175
+F + D P+ T SVLS+C
Sbjct: 296 KLFRRMFRKDYCPDELTFASVLSSCG 321
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF ++C + + + G ++H+ V+K G D F+ ++++ FY A F+ +
Sbjct: 110 TFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCI 169
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGK 184
++ D+V W ++ +EAI++F + + K + T S+LS+C GS +LGK
Sbjct: 170 LYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSSCKYKGSGELGK 229
Query: 185 AIH 187
+H
Sbjct: 230 QLH 232
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V+K G ++++ +QN LL YV +D+ SA +F+ + +V++
Sbjct: 51 VVKLGLVNELSVQNKLLRVYVKCRDLDSARNLFDEMARRNVLSMA--------------G 96
Query: 152 IDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++M G+ V P+ T + +C L + G+ +H+ ++ + + + +AV+DF
Sbjct: 97 MEMLMGL-VDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDF 152
>gi|255568506|ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535524|gb|EEF37193.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 420
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q P++A+ L+ +ML NH+T + LKA ++ + G +HA IKYG+ ++
Sbjct: 158 SQHDRPKDALLLFPQMLTLGFRPNHFTLSSLLKASGVSPSDSNGRLLHAFCIKYGYSCNV 217
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
++ ++LL Y + A IF+ + + V+W +I+G ++ G + A F +
Sbjct: 218 YVGSALLDMYARSGHLEEALFIFDGLPSRNEVSWNALIAGCARKGDQELAFSFFSKMLRE 277
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+++P T VLSAC+S+GS + GK +HA
Sbjct: 278 NIQPTQFTYSIVLSACASIGSLEQGKWVHA 307
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 8/171 (4%)
Query: 41 LTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
L QS T + + L ++ L + H F K C+L + ++G +HAH++ H
Sbjct: 59 LDQSGTGLHVLDLIDRASLEPDRTLYHILF----KKCTLFNKLKEGQLVHAHLLNSRFKH 114
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---C 156
D+ IQN++L+ Y ++ A ++F+ + DVVTWT +I+G S+ K+A+ +F
Sbjct: 115 DLVIQNTILNMYAKCGNLGEARKVFDQMPVKDVVTWTALITGYSQHDRPKDALLLFPQML 174
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +PN TL S+L A S G+ +HA ++ N+ + +A+LD
Sbjct: 175 TLGFRPNHFTLSSLLKASGVSPSDSNGRLLHAFCIKYGYSCNVYVGSALLD 225
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ + + A ++KML +T++ L AC+ + ++G +HA +IK
Sbjct: 252 NALIAGCARKGDQELAFSFFSKMLRENIQPTQFTYSIVLSACASIGSLEQGKWVHALLIK 311
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G F+ N+LL Y I A ++F+ +V DVV+W ++++G ++ G A+ +
Sbjct: 312 SGAKLVDFVGNTLLGMYAKSGSIEDARKVFDGLVKRDVVSWNSMLAGYAQHGLGNIALLI 371
Query: 155 FCG---IDVKPNANTLVSVLSACSSLG 178
F I V PN T + VL+ACS G
Sbjct: 372 FRQMLIIGVAPNDITFLCVLTACSHAG 398
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 8/189 (4%)
Query: 27 KIPQPHI----LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+IP P I + +++ + + A+ LY KMLN YT+ LKAC+ A
Sbjct: 60 EIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAI 119
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G IH+HV D+++ +L+ FY ++ A ++F+ + D+V W +ISG
Sbjct: 120 DDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGF 179
Query: 143 SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S + I +F + + PN +T+V + A G+ + GKA+H + R N+
Sbjct: 180 SLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSND 239
Query: 199 IILDNAVLD 207
+++ +LD
Sbjct: 240 LVVKTGILD 248
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + P+ + L+++M + T L ACS A G H + +
Sbjct: 378 NSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVV 437
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G+ + I N+L+ Y + A ++F+++ D+V+W T++ G G KEA+ +
Sbjct: 438 HGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSL 497
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
F + V P+ TL+++LSACS G GK +
Sbjct: 498 FNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQL 532
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H + +K G + D+ +QN+++ FY + A + F+ + DV+++ ++I+G
Sbjct: 330 VHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCR 389
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+E+ +F + ++P+ TL+ VL+ACS L + G + H + + + N + NA
Sbjct: 390 PEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNA 449
Query: 205 VLD 207
++D
Sbjct: 450 LMD 452
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
S N T A A A ++G +H + + G +D+ ++ +L Y K I A +
Sbjct: 202 SPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARR 261
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSV-----LSACSSL 177
+F+ + VTW+ +I G + KEA ++F + V N + V L C+
Sbjct: 262 VFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARF 321
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G G+ +H ++++ ++ + N ++ F
Sbjct: 322 GDLSGGRCVHCYAVKAGFILDLTVQNTIISF 352
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ Q+ P+ A+ L +M + +T + L AC+ + Q G EIH +V++
Sbjct: 420 NALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLR 479
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ SLL Y+ SA +F+ + ++V+W +ISG S+ G E++ +
Sbjct: 480 NGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLAL 539
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ + +VSV ACS L + +LGK H + L+ L + + +++D
Sbjct: 540 FRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIID 595
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
+++TF +KAC + G IH VIK G + D+F+ N+L+ Y + A ++F
Sbjct: 145 DNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVF 204
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSR 180
+ + ++V+W ++I S+ GF +++ D+ + + P+ T+V++L C+ G
Sbjct: 205 DFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEV 264
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVL 206
+G IH +++ ++++NA++
Sbjct: 265 DIGMGIHGLAVKLGLSEEVMVNNAMV 290
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ P ++ L+ K L+ + ACS A + G E H +V+K
Sbjct: 521 NAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK 580
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D F+ S++ Y I + ++F+ + +V +W II G KEAI++
Sbjct: 581 ALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIEL 640
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
+ + P+ T + +L AC G
Sbjct: 641 YERMKKVGQMPDRFTYIGILMACGHAG 667
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS-LLHFYVTVKDIFSAHQIFNSVVFPD 131
L+AC + G +H V H + ++ N+ L+ Y + +F+++ +
Sbjct: 50 LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
++ W ++SG ++ G + + + +F + D +P+ T SV+ AC + +LG+ IH
Sbjct: 110 LIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIH 169
Query: 188 AHSLR 192
++
Sbjct: 170 GMVIK 174
>gi|302142104|emb|CBI19307.3| unnamed protein product [Vitis vinifera]
Length = 683
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 5/185 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ TL+ S P+ A+ ++ +ML + +YT AL A S H+ +
Sbjct: 92 ELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKEL 151
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH + IKY D I NSL Y + A + F + +V++WTT+IS
Sbjct: 152 GKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGD 211
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G + F + V+PN TL S LS C + S +G IH+ +++ E+N+ +
Sbjct: 212 NGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPI 271
Query: 202 DNAVL 206
N+++
Sbjct: 272 KNSIM 276
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 18/159 (11%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+ + +ML+ N +T T AL C + + G +IH+ IK G ++ I+NS+++
Sbjct: 218 GLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMY 277
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK-------------CGFHKEAIDMFC 156
Y+ I A ++F+ + +VTW +I+G ++ CG EA+ +F
Sbjct: 278 LYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCG--TEALSIFL 335
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
++ +KP+ T SVLS CSSL + + G+ +HA +++
Sbjct: 336 KLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIK 374
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174
+A ++F+ + +VV+WTT+++G + A+ +F + P TL + LSA
Sbjct: 84 LTARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSAS 143
Query: 175 SSLGSRKLGKAIHAHSLR 192
S L S++LGK IH +S++
Sbjct: 144 SDLHSKELGKQIHGYSIK 161
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 100/190 (52%), Gaps = 11/190 (5%)
Query: 27 KIPQPHIL---NTLLKLLTQSST----PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
+IP P + NTLL+ + + A ++ +M+ + + YTF LKAC+ A
Sbjct: 92 RIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASA 151
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
A ++G + H +K G ++ +L++ Y D+ +A +F+ + VV++ +I
Sbjct: 152 RAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211
Query: 140 SGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
+ + EA+ +F + +KP + TL+SVLSAC+ LG+ +LG+ IH + +R +
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDY-IRKMRL 270
Query: 197 NNIILDNAVL 206
++++ N L
Sbjct: 271 DSLVKVNTAL 280
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +SS P A+ L+ +M T L AC+L A + G IH ++ K
Sbjct: 208 NAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK 267
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + +L+ Y + A +F + D W+ ++ + G+ +EAI M
Sbjct: 268 MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISM 327
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +KP+ T + VL ACS G
Sbjct: 328 FEEMKKQGMKPDDVTFLGVLYACSHSG 354
>gi|297746034|emb|CBI16090.3| unnamed protein product [Vitis vinifera]
Length = 458
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
S + N++ + + + Q N ++ L+ + A+ ++KM + +TFT L
Sbjct: 163 SLEDFNKVCSGVTRWDQIS-WNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVL 221
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
+A + +G +IHA V+K G+ ++ +QN L+ Y I A ++F+ + DV+
Sbjct: 222 RAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVI 281
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+W +++SG + G+ +EA+++F + VKP+ T + VLSAC +G
Sbjct: 282 SWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVG 329
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+ +I+ +++ P A+ L M N+ T+ L + S ++
Sbjct: 71 MPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHC 130
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFY--VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
++H +I+ G + +++ +L+ Y + + +++ + V D ++W +I GLS
Sbjct: 131 KQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLS 190
Query: 144 KCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
G + A+ F GID+ + T SVL A + + GK IHA L+ +N
Sbjct: 191 NLGNGEAALKCFSKMRQAGIDM--DLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSN 248
Query: 199 IILDNAVL 206
+ + N ++
Sbjct: 249 LNVQNGLV 256
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
++ + L C + G+++H +K G ++I + L+ Y +I ++ +F+
Sbjct: 11 FSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDL 70
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLGSRKL 182
+ +++TWT++++G + C A+ DM + ++ N T +LS+ SS
Sbjct: 71 MPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQ-RLGIRLNYVTYNCLLSSFSSSNDLDH 129
Query: 183 GKAIHAHSLRNLNENNIILD 202
K +H +R E+N L+
Sbjct: 130 CKQVHCRIIREGLESNSYLE 149
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ TQS + L+ M + +T K C A +G ++HA+ IK
Sbjct: 486 NAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIK 545
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D+++ + +L YV D+ +A F+S+ PD V WTT+ISG + G + A +
Sbjct: 546 SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHV 605
Query: 155 FCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + V P+ T+ ++ A S L + + G+ IHA++L+ N+ + +++D
Sbjct: 606 FSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVD 661
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 12/142 (8%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
A+K SLA Q +H +K G + + NSL++ Y ++ A +F+++ D
Sbjct: 325 AVKVDSLALGQQ----VHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERD 380
Query: 132 VVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGS-RKLGKA 185
+++W ++I+G+++ G EA+ +F CG+ KP+ T+ SVL A SSL L K
Sbjct: 381 LISWNSVIAGIAQNGLEVEAVCLFMQLLRCGL--KPDQYTMTSVLKAASSLPEGLSLSKQ 438
Query: 186 IHAHSLRNLNENNIILDNAVLD 207
+H H+++ N ++ + A++D
Sbjct: 439 VHVHAIKINNVSDSFVSTALID 460
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I +P T++ ++ + A ++++M + +T KA S A ++G
Sbjct: 578 IPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 637
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA+ +K +D F+ SL+ Y I A+ +F + ++ W ++ GL++
Sbjct: 638 RQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 697
Query: 146 GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
G KE + +F + +KP+ T + VLSACS G
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 87/177 (49%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC-SLAHAHQKGLEIHAHVI 93
N+++ + Q+ A+ L+ ++L C + YT T LKA SL ++H H I
Sbjct: 385 NSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAI 444
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K ++ D F+ +L+ Y + + A +F F D+V W +++G ++ + +
Sbjct: 445 KINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLK 503
Query: 154 MFCGIDVKPNAN---TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F + + + TL +V C L + GK +HA+++++ + ++ + + +LD
Sbjct: 504 LFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILD 560
Score = 43.1 bits (100), Expect = 0.071, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 35 NTLLKLLTQSS-----TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89
N++L QSS Q A L+ + + T + LK C + H
Sbjct: 109 NSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFH 168
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK 149
+ K G D F+ +L++ Y+ + +F + + DVV W ++ + GF +
Sbjct: 169 GYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKE 228
Query: 150 EAIDM---FCGIDVKPNANTL 167
EAID+ F + PN TL
Sbjct: 229 EAIDLSSAFHSSGLNPNEITL 249
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 7/190 (3%)
Query: 23 AQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
AQ + P ++L T+++ ++ P +A+ L+ ++L + + T A+KA + + +
Sbjct: 89 AQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSP 148
Query: 83 QKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+ IH K G + + N+L+H Y + + A ++F+ + DVV+WTT+I G
Sbjct: 149 TEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDG 206
Query: 142 LSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G EA +FC + V PN TLV+ SA +G LG+ +H + +
Sbjct: 207 YARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266
Query: 198 NIILDNAVLD 207
++ L+NA++D
Sbjct: 267 SVNLENALVD 276
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 35/187 (18%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
TL+ + P A ++ +M+ S + N T A A G +H +++
Sbjct: 202 TLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVE 261
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++N+L+ + + +A ++F+ + DV +WT+++S +KCG + A +
Sbjct: 262 SGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKL 321
Query: 155 F------------CGIDVKPNAN----------------------TLVSVLSACSSLGSR 180
F C + +AN TLVSVLSAC+ L S
Sbjct: 322 FKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSL 381
Query: 181 KLGKAIH 187
+G ++
Sbjct: 382 DVGTWLY 388
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++++ ++ + ++ P AI ++N M+ T L AC+ +
Sbjct: 324 EIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDV 383
Query: 85 GLEIH-AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G ++ +++ + + N+ + + D+ +A ++F+++ +VV+W T+I
Sbjct: 384 GTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHG 443
Query: 144 KCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLG 178
G +EA+ +F G + P+ T + VLSACS G
Sbjct: 444 LHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGG 481
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 7/190 (3%)
Query: 23 AQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
AQ + P ++L T+++ ++ P +A+ L+ ++L + + T A+KA + + +
Sbjct: 89 AQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSP 148
Query: 83 QKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+ IH K G + + N+L+H Y + + A ++F+ + DVV+WTT+I G
Sbjct: 149 TEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDG 206
Query: 142 LSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G EA +FC + V PN TLV+ SA +G LG+ +H + +
Sbjct: 207 YARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266
Query: 198 NIILDNAVLD 207
++ L+NA++D
Sbjct: 267 SVNLENALVD 276
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 35/187 (18%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
TL+ + P A ++ +M+ S + N T A A G +H +++
Sbjct: 202 TLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVE 261
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++N+L+ + + +A ++F+ + DV +WT+++S +KCG + A +
Sbjct: 262 SGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKL 321
Query: 155 F------------CGIDVKPNAN----------------------TLVSVLSACSSLGSR 180
F C + +AN TLVSVLSAC+ L S
Sbjct: 322 FKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSL 381
Query: 181 KLGKAIH 187
+G ++
Sbjct: 382 DVGTWLY 388
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP ++++ ++ + ++ P AI ++N M+ T L AC+ +
Sbjct: 324 EIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDV 383
Query: 85 GLEIH-AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G ++ +++ + + N+ + + D+ +A ++F+++ +VV+W T+I
Sbjct: 384 GTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHG 443
Query: 144 KCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLG 178
G +EA+ +F G + P+ T + VLSACS G
Sbjct: 444 LHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGG 481
>gi|297834252|ref|XP_002885008.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
gi|297330848|gb|EFH61267.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 12/206 (5%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY 67
SL L+F + +H+ P N L + + S TP +I Y++M + N
Sbjct: 52 SLVKDLTFARTLLLHSSD---STPSTWNMLNRGYSSSDTPVESIWFYSEMERRGINPNKL 108
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF LKAC+ G +I V+K+G D+++ N+L+H Y + K + A ++F+ +
Sbjct: 109 TFPFLLKACASFLGLTAGRQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTYDARKMFDEM 168
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ V+W +I++ L + G + FC G P+ T+V +LSAC G+ LGK
Sbjct: 169 TDRNFVSWNSIMTALVENGKFNLVFECFCEIIGRRFCPDETTMVVLLSACC--GNLSLGK 226
Query: 185 AIHAHSLRNLN---ENNIILDNAVLD 207
H+ S R + E N L A++D
Sbjct: 227 -FHSQSRRVVVRELELNCRLGTALVD 251
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 60 CPSSYNHYTFTQALKAC----SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
CP + T L AC SL H + + V++ L + + +L+ Y
Sbjct: 205 CP---DETTMVVLLSACCGNLSLGKFHSQSRRV---VVRELEL-NCRLGTALVDMYAKSG 257
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVL 171
+ A +F +V +V TW +I GL++ GF +EA+ +F + V+P T + VL
Sbjct: 258 GLEYARLVFERMVDKNVWTWNAMIVGLAQYGFVEEALQLFAKMMKESTVRPKYVTFLGVL 317
Query: 172 SACS 175
ACS
Sbjct: 318 CACS 321
>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
Length = 613
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 29 PQPHILNTLLKLLTQSSTPQNA-----IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
P+ NTL++ ++ + L+ M++ + YTF KAC+ A Q
Sbjct: 96 PEAFDYNTLMRGYVAAAGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQ 155
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT--WTTIISG 141
+G ++ H++K G D QNSL+ FY + A + F + + T W+ +++
Sbjct: 156 EGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAA 215
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
++ G E ++ F + +P+ +++VS LSAC+ LG+ +G++IH LRN N
Sbjct: 216 YTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLN 275
Query: 199 IILDNAVLDF 208
+ +++D
Sbjct: 276 TFMSTSLVDM 285
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL T++ + + M+ + + AL AC+ AH G IH +++
Sbjct: 210 SALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLR 269
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ F+ SL+ Y I +A +F+++ + T++ ++SGL+ G ++A+++
Sbjct: 270 NTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEV 329
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +P+A V VL+ACS G
Sbjct: 330 FDAMVREGHRPDAAVYVGVLNACSRAG 356
>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 10/210 (4%)
Query: 6 LKSLKPTLSFKQLNQIH---AQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
LKSL LS ++H A + P + N +++ + P+ A+ Y ML +
Sbjct: 46 LKSL--VLSHAAAGRMHDALAAVRSSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGA 103
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAH 121
+ +TF +K C+ A ++G H+ I+ G + +++ NSLL FY + + A
Sbjct: 104 RPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAE 163
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSL 177
++F+ + D+VTW +++ G G A+D F G+ V+ + +++ L+AC
Sbjct: 164 RVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLD 223
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ G+ +HA+ +R+ E ++ + ++LD
Sbjct: 224 SALMQGREVHAYVIRHGLEQDVKVGTSLLD 253
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI L+ ++LN P +++T + + A L ++ ++H+++++ + + + N+++H
Sbjct: 396 AITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMH 455
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y D+ S+ +IF+ + DV++W TII G + G K A++MF + ++PN +T
Sbjct: 456 MYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNEST 515
Query: 167 LVSVLSACSSLG 178
VSVL+ACS G
Sbjct: 516 FVSVLTACSVSG 527
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC L A +G E+HA+VI++G D+ + SLL Y I SA +F ++
Sbjct: 216 ALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRT 275
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVSVLSACSSLGSRKLGKAI 186
VVTW +I G + G +EA D C + +K + T +++L+AC+ S G+++
Sbjct: 276 VVTWNCMIGGYALNGCPEEAFD--CFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSV 333
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H + R+ +++L+ A+L+
Sbjct: 334 HGYVTRSQFLPHVVLETALLE 354
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P+ A + +M T L AC+ + G +H +V + L + ++ +
Sbjct: 292 PEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETA 351
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
LL Y V + S+ IF + +V+W +I+ + EAI +F + + P+
Sbjct: 352 LLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPD 411
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T+ +V+ A LG + + +H++ +R N ++ NAV+
Sbjct: 412 YFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVM 454
>gi|242086084|ref|XP_002443467.1| hypothetical protein SORBIDRAFT_08g019910 [Sorghum bicolor]
gi|241944160|gb|EES17305.1| hypothetical protein SORBIDRAFT_08g019910 [Sorghum bicolor]
Length = 504
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++++ N+++ L + ++A+ L+ M +C + ++F+ + AC ++
Sbjct: 186 VMRVRNMVACNSMMAALLGTGQAEDALRLFVSMASCGVGVDGFSFSIVVDACGELALLKQ 245
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G+++HA V+ G D+ ++NSL+ Y + SA +F +V D + WTT+IS K
Sbjct: 246 GMQVHAQVVGGGFEADVVVRNSLVDMYAKCGCVDSAELVFKAVSSNDALLWTTMISAYGK 305
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
G ++A+ MF + +K + ++VLSACS G
Sbjct: 306 FGRVRDAVSMFERMAHLGIKQDGIAYLAVLSACSHGG 342
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACS------LAHAHQKGLEIHAHVIKYGHLH-- 99
++A+ L +M+ N Y+ + L AC+ LAH G EIHA V+K
Sbjct: 104 RDALALLRRMVGSGVEPNGYSLSGGLLACAGVGRSALAH----GKEIHASVVKMSSRGPV 159
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---- 155
D ++N +L Y I A ++F + ++V ++++ L G ++A+ +F
Sbjct: 160 DPVVENGVLDMYSRCGSIEYALRVFGVMRVRNMVACNSMMAALLGTGQAEDALRLFVSMA 219
Query: 156 -CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
CG+ V + ++V + AC L K G +HA + E ++++ N+++D
Sbjct: 220 SCGVGVDGFSFSIV--VDACGELALLKQGMQVHAQVVGGGFEADVVVRNSLVDM 271
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
++++ + ALK + + +HA + K G SL H + A
Sbjct: 17 AAWDATSLASALKTAAARRSAAHVGPLHAVLRKLGLSASAIHATSLAHLALRSGLARYAR 76
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
++F+ + DVV+WT++++G + G H++A+ + G V+PN +L L AC+ +G
Sbjct: 77 ELFDEMPRRDVVSWTSLVTGHAHQGLHRDALALLRRMVGSGVEPNGYSLSGGLLACAGVG 136
Query: 179 SRKL--GKAIHAHSLRNLNENNI--ILDNAVLDF 208
L GK IHA ++ + + +++N VLD
Sbjct: 137 RSALAHGKEIHASVVKMSSRGPVDPVVENGVLDM 170
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +T+LK ++ST ++A+ Y +M Y FT L+ ++G EIH V
Sbjct: 109 LYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMV 168
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I G ++F ++++ Y + I A+++F + D+V+W T+++G ++ GF + A+
Sbjct: 169 ITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAV 228
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + KP++ TLVSVL A + L + ++G++IH ++ R E + + A+LD
Sbjct: 229 QVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLD 286
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ Q+ + A + KML+ + + AL AC+ ++G +H + +
Sbjct: 313 NTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDE 372
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ + NSL+ Y K + A +F ++ VVTW +I G ++ G EA+++
Sbjct: 373 KKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNL 432
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
FC + D+KP++ TLVSV++A + L + K IH ++R L + N+ + A++D
Sbjct: 433 FCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALID 488
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ L+ +M + + +T + A + ++ IH I+
Sbjct: 414 NAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIR 473
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++F+ +L+ + I +A ++F+ + V+TW +I G G +EA+D+
Sbjct: 474 TLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDL 533
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + VKPN T +SV++ACS G
Sbjct: 534 FNEMQNGSVKPNEITFLSVIAACSHSG 560
>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
Length = 1241
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+K L Q A+ L++K + + +TF LK C+ G IHA ++ G
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-----VFPDVVTWTTIISGLSKCGFHKEAI 152
D +I SL++ YV + SA Q+F+ + PD+ W +I G K G +E +
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
FC + ++P+ +L VL C+ L G+ IH + +RN+ E + L+ A++
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALI 589
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 93/176 (52%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + +A+ LYNKM + + +T + L CS+ ++ G +HA VIK
Sbjct: 719 NAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIK 778
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
++ IQ++LL Y A +F ++ DVV W ++I+G + K+A+D+
Sbjct: 779 RSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDL 838
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ VK +++ + SV+SA L + +LG IH +++ E+++ + +++D
Sbjct: 839 FRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVD 894
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + ++ LY+ N +FT A ACS G ++H VIK
Sbjct: 618 NVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIK 677
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D ++ SLL Y + A ++F+ V+ +V +IS G +A+ +
Sbjct: 678 MNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGL 737
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ + + ++ T+ S+LS CS +GS G+ +HA ++ ++N+ + +A+L
Sbjct: 738 YNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALL 792
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + + P+ +I L ++L + + T L A S A KG +HA+ I+
Sbjct: 921 NSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR 980
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D+ ++N+L+ YV + A IF ++ ++VTW ++I+G G +EA+ +
Sbjct: 981 LQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRL 1040
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + + P+ T ++++++CS G
Sbjct: 1041 FKEMKRSETAPDEVTFLALITSCSHSG 1067
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH IK G D+F+ SL+ Y SA +F+S+ ++V W ++IS S G
Sbjct: 873 IHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGL 932
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+ +I++ I ++ ++ +VL A SS+ + GK +HA+ +R +++ ++NA
Sbjct: 933 PEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENA 992
Query: 205 VLD 207
++D
Sbjct: 993 LID 995
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + + A+ L+ +M + N YTF AL+AC + ++G+ IHA V+K
Sbjct: 251 NSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK 310
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ ++F+ N+L+ Y + A IF ++ D ++W +++SG + G + EA+
Sbjct: 311 SSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQF 370
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + KP+ ++S+++A + G+ G IHA++++N ++++ + N+++D
Sbjct: 371 YHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVD 426
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + P ++ LY +M + TF LKAC L + G E+H IK
Sbjct: 149 NAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIK 208
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAID 153
G++ +F+ NS++ Y D+ A Q+F+ + DVV+W ++IS S G EA+
Sbjct: 209 EGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALR 268
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + + PN T V+ L AC K G IHA L++ N+ + NA++
Sbjct: 269 LFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 324
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L Q+ A+ Y++M + + + A + + G++IHA+ +K
Sbjct: 352 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMK 411
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + NSL+ Y + IF+ + DVV+WTTII+G ++ G H A+++
Sbjct: 412 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 471
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F GID+ + + S+L ACS L K IH++ +R ++++L N ++D
Sbjct: 472 FREVQLEGIDL--DVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNGIVD 526
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P +++ T++ Q+ + A+ L+ ++ + + L ACS
Sbjct: 443 KMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISS 502
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
EIH+++I+ G L D+ +QN ++ Y ++ A ++F + F DVV+WT++IS
Sbjct: 503 VKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVH 561
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G EA+++F + V+P++ +LVS+LSA +SL + K GK IH +R
Sbjct: 562 NGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIR 612
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+KG EIH +I+ G + + + ++L+ Y + + +FN + D+V WT++I+
Sbjct: 601 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 660
Query: 143 SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G + AID+F ++ + P+ V+VL ACS G G+
Sbjct: 661 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 705
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 61 PSSYN-HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIF 118
PS ++ ++ L+ C A +G ++HAH+I L + +F+ L+ Y +
Sbjct: 72 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACS 175
A ++F+ + + TW +I G +++++ + V +A T +L AC
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
L R+ G +H +++ + + + N+++
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIV 222
>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37310-like [Cucumis sativus]
Length = 635
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 18/194 (9%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSS---YNHYTFTQALKA-CSLAH 80
KIP+ +I N L T + + + L++ ++N S+ + +T T +LKA SL
Sbjct: 63 KIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFS 122
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
E+H+ +++ G +DIF+ N+L+ FY ++ A +F+ + D V+W +++
Sbjct: 123 NSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLA 182
Query: 141 GLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
G S+ G ++E ++F ++VKPNA T VSVL AC+ G +H R +NE
Sbjct: 183 GYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVH----RFVNE 238
Query: 197 NNIILD----NAVL 206
+ I +D NAV+
Sbjct: 239 SQIKMDVSLWNAVI 252
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 35/208 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N +L +Q + + L+ ML+ N T L+AC+ ++ G+E+H V
Sbjct: 178 NAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVN 237
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
+ D+ + N+++ Y + A ++F + D +T+ ++ISG GF +A+D
Sbjct: 238 ESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMD 297
Query: 154 MF-------------------------CGIDV---------KPNANTLVSVLSACSSLGS 179
+F +D+ +PN TL S+L S +
Sbjct: 298 LFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFST 357
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
K GK IH +++RN + NI + A++D
Sbjct: 358 LKGGKEIHGYAIRNTYDRNIYVATAIID 385
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 7/151 (4%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N+ + + ++ C+ + G ++HA ++ + D F+ + L+ FY I A+ +F
Sbjct: 2 NYSAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVF 61
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLG 178
+ ++ +W + + H + + +F + DVKP+ T+ L A +SL
Sbjct: 62 GKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLF 121
Query: 179 SRK-LGKAIHAHSLRNLNENNIILDNAVLDF 208
S L K +H+ LR E +I + NA++ F
Sbjct: 122 SNSGLAKEVHSFILRRGLEYDIFVVNALITF 152
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P+ N ++ L Q++ + A+ ++ M + N T L S + G EI
Sbjct: 305 PRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEI 364
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H + I+ + +I++ +++ Y + A +F+ + ++ WT+IIS + G
Sbjct: 365 HGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDA 424
Query: 149 KEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
A+ +F + ++P+ T SVL+AC+ G
Sbjct: 425 NVALSLFYEMLTNGIQPDQVTFTSVLAACAHSG 457
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + ++N +L + N TF+ L AC+ + KG+ +H +IK G +DIF+ +L
Sbjct: 430 EKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTAL 489
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
Y DI S+ Q+F + + ++WT +I GL++ GF E++ +F + +V PN
Sbjct: 490 TDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549
Query: 164 ANTLVSVLSACSSLG 178
L+SVL ACS G
Sbjct: 550 ELMLLSVLFACSHCG 564
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 34/193 (17%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ ++L N TFT ++AC G+ I V+K G H + + NSL+
Sbjct: 168 ALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLIT 227
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTI------------------------------- 138
+ + +I A ++F+ + DVV+WT I
Sbjct: 228 LSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAM 287
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+ S+ G+ +EA+ +F + KPN + LSA +SL + G IH H +
Sbjct: 288 IARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGI 347
Query: 196 ENNIILDNAVLDF 208
+ ++ + ++++D
Sbjct: 348 DKDVFIGSSLIDL 360
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ ++ +QS + A+ L++KM+ N F L A + A G+ IH HV K
Sbjct: 285 SAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTK 344
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH------ 148
G D+FI +SL+ Y +F+ ++ +VV W +++ G S G
Sbjct: 345 IGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEEL 404
Query: 149 -------------------------KEAIDMFCGIDVK---PNANTLVSVLSACSSLGSR 180
++ +++F + V PN +T SVL AC+S+ S
Sbjct: 405 FELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASL 464
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLD 207
G +H ++ + +I + A+ D
Sbjct: 465 DKGMNVHGKIIKLGIQYDIFVGTALTD 491
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
F +VV+WT ISG + G + EA+ +F + V+PN T SV+ AC LG LG +
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205
Query: 186 I 186
I
Sbjct: 206 I 206
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
Q+ + A+ L ++ S + +FT AL AC+ + G IH+ IK G +
Sbjct: 268 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 327
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGI 158
++ N L+ Y ++ +F ++ P DVV+WT IIS + G + A+D+F +
Sbjct: 328 SYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 387
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+KPN T+ S+LSAC +LG+ KLG+ HA
Sbjct: 388 LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHA 420
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 10/162 (6%)
Query: 24 QIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81
+ I++P+ +++ ++ Q+ + A+ L+ ML N T T L AC A
Sbjct: 352 RTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGA 411
Query: 82 HQKGLEIHAHVIKYGHLHDIFIQNSL--LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
+ G + HA + K G +F+ NSL ++F +D F +F + D++TW ++
Sbjct: 412 IKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC---VFEEMPEHDLITWNAVL 468
Query: 140 SGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
G ++ G KEAI +F ++V+ P+ + + VL ACS G
Sbjct: 469 VGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAG 510
Score = 36.6 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+W +I+G + +EA+++ + P+ ++ S LSAC+++G ++G+ IH+ +
Sbjct: 260 SWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLA 319
Query: 191 LRNLNENNIILDNAVL 206
++ + N + N ++
Sbjct: 320 IKTGCQFNSYVMNGLI 335
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML----NCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
N++L+ S+ P+ A+ Y +ML N P + +TF LK C+L + G +H
Sbjct: 47 NSMLRAFVNSNMPRRALQSYTEMLERSRNVP---DRFTFPSLLKGCALLLEFKVGKVLHG 103
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
V+KY D++I+ +LL+ Y D+ SA +F + + V WT++ISG K E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 151 AIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
A+ ++ ++ P+ T+ +++SAC+ L +G +H+H
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +++ ++ P A+ LY KM S + T + AC+ G+++H+H+
Sbjct: 147 VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI 206
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ + ++L++ Y D+ +A Q+F+ + DV W+ +I G K EA+
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEAL 266
Query: 153 DMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F G +++PN T+++V+SAC+ LG + G+ +H + R +++ L+N+++D
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + AC+ + G +H ++ + H + + NSL+ + DI +A +IF
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIF 340
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+S+ + D+++W ++++G + G +EA+ F D++P+ T + VL+ACS G +
Sbjct: 341 DSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQ 400
Query: 182 LGKAI 186
GK +
Sbjct: 401 EGKKL 405
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 50/231 (21%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIP----QPHILNTLLKLLTQSST-----------PQNAIP 52
SL+ F+++ Q+HAQ + P LL+ S P +
Sbjct: 19 SLRTCHDFQEVKQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSPDVF 78
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY- 111
+YN M+ + +++T+T LKACS A +G ++H +IK G + D I +SL+H Y
Sbjct: 79 VYNTMIR-GLTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYT 137
Query: 112 ------------------------------VTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+T + A ++F+ + D +W+ +I+G
Sbjct: 138 NSGSIDDAERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITG 197
Query: 142 LSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAH 189
+K G H EA+ +F + V PN LVS+LSAC LG+ G+ IHA+
Sbjct: 198 YTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAY 248
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L+ T++ A+ L+ M+ N L AC +G IHA++ K
Sbjct: 192 SALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDK 251
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L + +L+ Y I + +F + DVVTW +IS + G + +
Sbjct: 252 TRVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQL 311
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + ++PN V++LSACS G + G+
Sbjct: 312 FDEMLADGIRPNKVIFVAILSACSHAGCVEEGR 344
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+L+ C H Q+ ++HA + G L + LL YVT+ I+ A IF + P
Sbjct: 19 SLRTC---HDFQEVKQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSP 75
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
DV + T+I GL+ +D F T VL ACS L + GK +H
Sbjct: 76 DVFVYNTMIRGLT--------MDNF----------TYTFVLKACSHLKAPFEGKQVHCQI 117
Query: 191 LR 192
++
Sbjct: 118 IK 119
>gi|218196791|gb|EEC79218.1| hypothetical protein OsI_19946 [Oryza sativa Indica Group]
Length = 229
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
L+ L+ L +S P +A+ + ML +H+T L++C+L + HA +
Sbjct: 14 LSALVTSLARSGRPADALRAFRDMLARGVPPDHFTLPPVLRSCALTGSSALAASAHALAL 73
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G ++F+ ++L+ Y + ++ A ++F+ + D V WT+++S ++ G + A+
Sbjct: 74 KIGAQGNLFVASALVLCYSGLSNLPDARRLFDGMRERDAVLWTSMLSAYAQGGHPEAALR 133
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F G+ V+ +A +VS L AC +G R+ G+++HA +R L + L NA++D
Sbjct: 134 FFQGMVAARVQLDAVVMVSSLLACGQIGWRRHGRSVHACCIRRLPGMPLSLGNALVD 190
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ + + A+ L+ +M + N YTF AL+AC + ++G+ IHA V+K
Sbjct: 287 NSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK 346
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ ++F+ N+L+ Y + A IF ++ D ++W +++SG + G + EA+
Sbjct: 347 SSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQF 406
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ + KP+ ++S+++A + G+ G IHA++++N ++++ + N+++D
Sbjct: 407 YHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVD 462
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + P ++ LY +M + TF LKAC L + G E+H IK
Sbjct: 185 NAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIK 244
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEA 151
G++ +F+ NS++ Y D+ A Q+F+ + P DVV+W ++IS S G EA
Sbjct: 245 EGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM--PEKEDVVSWNSMISAYSSNGQSIEA 302
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +F + + PN T V+ L AC K G IHA L++ N+ + NA++
Sbjct: 303 LRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 360
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L Q+ A+ Y++M + + + A + + G++IHA+ +K
Sbjct: 388 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMK 447
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + NSL+ Y + IF+ + DVV+WTTII+G ++ G H A+++
Sbjct: 448 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 507
Query: 155 FC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F GID+ + + S+L ACS L K IH++ +R ++++L N ++D
Sbjct: 508 FREVQLEGIDL--DVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNGIVD 562
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P +++ T++ Q+ + A+ L+ ++ + + L ACS
Sbjct: 479 KMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISS 538
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
EIH+++I+ G L D+ +QN ++ Y ++ A ++F + F DVV+WT++IS
Sbjct: 539 VKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVH 597
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G EA+++F + V+P++ +LVS+LSA +SL + K GK IH +R
Sbjct: 598 NGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIR 648
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
+KG EIH +I+ G + + + ++L+ Y + + +FN + D+V WT++I+
Sbjct: 637 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 696
Query: 143 SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
G + AID+F ++ + P+ V+VL ACS G G+
Sbjct: 697 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 741
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 61 PSSYN-HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIF 118
PS ++ ++ L+ C A +G ++HAH+I L + +F+ L+ Y +
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167
Query: 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACS 175
A ++F+ + + TW +I G +++++ + V +A T +L AC
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 227
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
L R+ G +H +++ + + + N+++
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIV 258
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 94/167 (56%), Gaps = 6/167 (3%)
Query: 48 QNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH--DIFIQ 104
Q A+ L+++M N N TFT AC + ++G EIHA + G L + ++
Sbjct: 68 QEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILE 127
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK--- 161
N+LL+ YV + A ++F+++ PD +WT++I+ ++ EA+++F ++++
Sbjct: 128 NALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIP 187
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
P + TL SVL+AC+ G+ K+GK IH+ + ++++ A+LD
Sbjct: 188 PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDM 234
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
++G IH+ + G QN L+ Y + A IFN ++ VV+W+ +I
Sbjct: 2 EEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAY 61
Query: 143 SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNE 196
+ G +EA+ +F + V+PNA T V +AC + + G+ IHA ++ + L
Sbjct: 62 ALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKS 121
Query: 197 NNIILDNAVLDF 208
+N IL+NA+L+
Sbjct: 122 SNAILENALLNM 133
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P +++ T++ A+ L+++M T L AC+ + A + G +I
Sbjct: 153 PDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQI 212
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H+ + G + Q +LL Y + + ++F ++ + V+WT +I+ L++ G
Sbjct: 213 HSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQG 272
Query: 149 KEAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
EA+++F ++++ +A T + VL ACS G
Sbjct: 273 DEALELFKEMNLEGMVADATTFICVLRACSHAG 305
>gi|302142722|emb|CBI19925.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 100/189 (52%), Gaps = 13/189 (6%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ ++ A+ L+N M ++ TF L ACS +G+++HAHV
Sbjct: 308 LWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHV 367
Query: 93 IKYGHLHDIFIQNSLLHFYVTVK------DIFSAHQIFNSVVFPDVVT----WTTIISGL 142
K G +DI I ++L+ Y + +FS Q +++++ ++T W ++I G
Sbjct: 368 YKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVLISWNSMIVGF 427
Query: 143 SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
S+ EA+D+FC ++ ++ + +L V+SAC+S+ S +LG+ I A + E +
Sbjct: 428 SQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQ 487
Query: 200 ILDNAVLDF 208
I+ +++DF
Sbjct: 488 IISTSLVDF 496
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 37/210 (17%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQA--LKACSLAHAHQKGLEIHAH 91
N+++ + P+ A+ L+ + LN + TF A + AC+ A G +IHA
Sbjct: 175 NSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHAR 234
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD-------------------- 131
++ D + +SL++ Y DI SA+ + N + PD
Sbjct: 235 IVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDA 294
Query: 132 -----------VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177
VV W ++ISG EA+++F + V+ + +T SVLSACS+L
Sbjct: 295 RRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTL 354
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
G G +HAH + N+II+D+A++D
Sbjct: 355 GIIDQGIQVHAHVYKVGFTNDIIIDSALVD 384
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q++ P A+ L+ +M + ++ + AC+ + + G +I A
Sbjct: 421 NSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATI 480
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D I SL+ FY + ++F+ ++ D V W +++ G + G EA+++
Sbjct: 481 IGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNV 540
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
F + V+P T V VLSAC G + G+ +
Sbjct: 541 FDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKCY 576
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 90/182 (49%), Gaps = 14/182 (7%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
I N LL++ ++ ++ + A L+ +M N +++ ++ + + K LE+ +
Sbjct: 80 IGNRLLQMYSRCNSMREAQQLFEEM----PKRNCFSWNTMIEGYLKSGSKGKSLELFDSM 135
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
D F N ++ + ++ A ++FN + + + + W ++I G + G KEA+
Sbjct: 136 PH----KDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAV 191
Query: 153 DMFCGIDVKP------NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + + P + L +V+ AC++LG+ GK IHA + + E + +L ++++
Sbjct: 192 GLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLV 251
Query: 207 DF 208
+
Sbjct: 252 NL 253
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
+ + T QN + N+M++ + ++ + L +C+ + +G +H +K G LH
Sbjct: 21 IERQVTLQNHPFVCNEMVD----LDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHS 76
Query: 101 IF-IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ I N LL Y + A Q+F + + +W T+I G K G +++++F
Sbjct: 77 VLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELF 132
>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Vitis vinifera]
Length = 868
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH---AHQKGLEIHAH 91
N ++ +++ + A L++ ML P N+ T L C+ ++ G E+H H
Sbjct: 212 NAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCH 271
Query: 92 VIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
V++ L D+ + NSL+ FY+ + + A +F ++ D+V+W II+G + G +
Sbjct: 272 VLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLK 331
Query: 151 AIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNIILDNA 204
A+++F +KP++ TLVSVL AC+ + + ++ K IH + +R+ L E+ + NA
Sbjct: 332 ALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSV-GNA 390
Query: 205 VLDF 208
+L F
Sbjct: 391 LLSF 394
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQI 123
N T L C+ G +H++VIK G N+L+ Y + S A+
Sbjct: 141 NSVTIAIVLPVCARLR-EDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 199
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL--- 177
FN + F DVV+W +I+G S+ F +EA +F + ++PN T+ S+L C+SL
Sbjct: 200 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 259
Query: 178 GSRKLGKAIHAHSLRNLN-ENNIILDNAVLDF 208
+ GK +H H LR + ++ + N+++ F
Sbjct: 260 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSF 291
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 50 AIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
A+ L+ + + C Y N LK+C A + G +H + +K GH+ + L
Sbjct: 21 ALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLCKGL 80
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK-EAIDMFCGI----DVKP 162
L+ Y + +++F + D V W ++SGL+ H+ E + +F + + KP
Sbjct: 81 LNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKP 140
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
N+ T+ VL C+ L GK++H++ +++ E++ + NA++
Sbjct: 141 NSVTIAIVLPVCARL-REDAGKSVHSYVIKSGLESHTLAGNALI 183
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++++ ++ P A+ L++++ + T L AC+ + + H +VI+
Sbjct: 556 NLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR 615
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D+ + + + Y +F A+++F S D+V +T ++ G + G +EA+ +
Sbjct: 616 -ACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRI 674
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
F + VKP+ + +VL ACS G
Sbjct: 675 FSYMLELGVKPDHVIITAVLFACSHAG 701
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L AC+ H Q IH ++I++ G D + N+LL FY +A Q F
Sbjct: 351 TLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLM 410
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ D+++W I+ ++ G +++ + ++P++ T+++++ +++ K
Sbjct: 411 ISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKV 470
Query: 184 KAIHAHSLR 192
K H++S+R
Sbjct: 471 KETHSYSIR 479
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVK 161
NS++ YV A+ IFN++ D+ TW ++ ++ F +A+ +F G +K
Sbjct: 525 NSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMK 584
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ T++S+L AC+ + S + + H + +R N++ L+ A +D
Sbjct: 585 PDIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFID 629
>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
Length = 807
Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH---AHQKGLEIHAH 91
N ++ +++ + A L++ ML P N+ T L C+ ++ G E+H H
Sbjct: 151 NAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCH 210
Query: 92 VIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
V++ L D+ + NSL+ FY+ + + A +F ++ D+V+W II+G + G +
Sbjct: 211 VLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLK 270
Query: 151 AIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNIILDNA 204
A+++F +KP++ TLVSVL AC+ + + ++ K IH + +R+ L E+ + NA
Sbjct: 271 ALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSV-GNA 329
Query: 205 VLDF 208
+L F
Sbjct: 330 LLSF 333
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQI 123
N T L C+ G +H++VIK G N+L+ Y + S A+
Sbjct: 80 NSVTIAIVLPVCARLR-EDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 138
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL--- 177
FN + F DVV+W +I+G S+ F +EA +F + ++PN T+ S+L C+SL
Sbjct: 139 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 198
Query: 178 GSRKLGKAIHAHSLRNLN-ENNIILDNAVLDF 208
+ GK +H H LR + ++ + N+++ F
Sbjct: 199 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSF 230
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++++ ++ P A+ L++++ + T L AC+ + + H +VI+
Sbjct: 495 NLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR 554
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+D+ + + + Y +F A+++F S D+V +T ++ G + G +EA+ +
Sbjct: 555 -ACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRI 613
Query: 155 FC---GIDVKPNANTLVSVLSACSSLG 178
F + VKP+ + +VL ACS G
Sbjct: 614 FSYMLELGVKPDHVIITAVLFACSHAG 640
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L AC+ H Q IH ++I++ G D + N+LL FY +A Q F
Sbjct: 290 TLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLM 349
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLG 183
+ D+++W I+ ++ G +++ + ++P++ T+++++ +++ K
Sbjct: 350 ISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKV 409
Query: 184 KAIHAHSLR 192
K H++S+R
Sbjct: 410 KETHSYSIR 418
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVK 161
NS++ YV A+ IFN++ D+ TW ++ ++ F +A+ +F G +K
Sbjct: 464 NSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMK 523
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
P+ T++S+L AC+ + S + + H + +R N++ L+ A +D
Sbjct: 524 PDIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFID 568
Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK-EAIDMFCGI----DVK 161
LL+ Y + +++F + D V W ++SGL+ H+ E + +F + + K
Sbjct: 19 LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 78
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
PN+ T+ VL C+ L GK++H++ +++ E++ + NA++
Sbjct: 79 PNSVTIAIVLPVCARL-REDAGKSVHSYVIKSGLESHTLAGNALI 122
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ +M + N YTF AL+ + G+ IH +K H D+++ N+L+
Sbjct: 232 ALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIA 291
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANT 166
Y + A ++F S++ D V+W T++SGL + +++A++ F + KP+ +
Sbjct: 292 MYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVS 351
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++++++A G+ GK +HA+++RN ++N+ + N ++D
Sbjct: 352 VLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLID 392
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 8/178 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL L Q+ ++A+ + M N + + + A + G E+HA+ I+
Sbjct: 318 NTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIR 377
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ I N+L+ Y + F + D+++WTTII+G ++ H EAI++
Sbjct: 378 NGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINL 437
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F G+DV P + SVL ACS L SR + IH + + + +I+L NA+++
Sbjct: 438 FRKVQVKGMDVDP--MMIGSVLRACSGLKSRNFIREIHGYVFKR-DLADIMLQNAIVN 492
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ AI L+ K+ + L+ACS + EIH +V K
Sbjct: 420 TIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR 479
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
L DI +QN++++ Y V A + F S+ D+V+WT++I+ G EA+++F
Sbjct: 480 -DLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELF 538
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ +++P++ ++S LSA ++L S K GK IH +R
Sbjct: 539 YSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIR 578
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 5/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ S AI LY +M + + TF LKAC + G EIH +K
Sbjct: 114 NAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVK 173
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAI 152
G +F+ N+L+ Y D+ A +F+ ++ D V+W +IIS G EA+
Sbjct: 174 CGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEAL 233
Query: 153 DMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+F + V N T V+ L KLG IH +L++ + ++ + NA++
Sbjct: 234 SLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALI 290
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 58 LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117
L PS H + L C A +G ++HA ++K HL F+ LLH Y +
Sbjct: 39 LATPSRLEH-AHSLLLDLCVAVKALPQGQQLHARLLK-SHL-SAFLATKLLHMYEKCGSL 95
Query: 118 FSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSAC 174
A ++F+ + + TW ++ G + EAI+++ + V +A T SVL AC
Sbjct: 96 KDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKAC 155
Query: 175 SSLGSRKLGKAIHAHSLR 192
+LG +LG IH +++
Sbjct: 156 GALGESRLGAEIHGVAVK 173
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ + P A+ L+ + + AL A + + +KG EIH +I+
Sbjct: 520 SMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK 579
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII--SGLSKCGFHKEAID 153
G + I +SL+ Y + ++ ++F+SV D++ WT++I +G+ CG EAI
Sbjct: 580 GFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCG--NEAIA 637
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+F + +V P+ T +++L ACS G GK
Sbjct: 638 LFKKMTDENVIPDHITFLALLYACSHSGLMVEGK 671
>gi|413923546|gb|AFW63478.1| hypothetical protein ZEAMMB73_625657 [Zea mays]
Length = 489
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
+Y ML + YTF ALKAC+ A Q+G ++ AH++K G HD +QNSL+ FY
Sbjct: 1 MYVDMLEAGVRPDSYTFPFALKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYG 60
Query: 113 TVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTL 167
+ A F+ V + +W+ +++ +K G E ++ F + +P+ ++
Sbjct: 61 KCVEPAMARLAFDRVEAEERTAASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESST 120
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
VS LSAC+ LG+ +G+++H LRN N I+ +++D
Sbjct: 121 VSALSACAHLGAFDVGRSLHCALLRNTARLNTIMQTSLVDM 161
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 39/216 (18%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIP---QPHILNTLLKLLTQSSTPQNAIPLYNKML 58
F LK+ + ++ Q+ A I+K+ H+ N+L+ + P A ++++
Sbjct: 17 FPFALKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGKCVEPAMARLAFDRVE 76
Query: 59 -----------------------NCPSSY----------NHYTFTQALKACSLAHAHQKG 85
C S+ + + AL AC+ A G
Sbjct: 77 AEERTAASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESSTVSALSACAHLGAFDVG 136
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H +++ + +Q SL+ Y I A +F+++ + T++ ++SGL+
Sbjct: 137 RSLHCALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWTYSAMLSGLALH 196
Query: 146 GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLG 178
G ++A+ +F + + P+A T V VL+ACS G
Sbjct: 197 GDGRKALQVFDAMVRERHAPDAATYVGVLNACSRAG 232
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 3/174 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ + + + + L++ M N N AL+A + +KG+ IH + ++
Sbjct: 270 TMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQQ 329
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + DI + SL++ Y ++ A Q+F + DVV+W+ +I+ + G H EA+ +F
Sbjct: 330 GMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSLF 389
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ KPNA TL SVL C+ + + +LGK+IH ++++ E+ + AV+
Sbjct: 390 RDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATAVI 443
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 1 MFVNGLK---SLKPTLSFKQLNQIHAQII-KIPQPHIL--NTLLKLLTQSSTPQNAIPLY 54
+ V GLK L S Q + +I+ +P P ++ N++++ T++ + A+ ++
Sbjct: 28 LIVAGLKPHNQLINAYSLFQRPDLSRKIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVF 87
Query: 55 NKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113
M + YTFT ALKAC+ + ++GL IH + + G D++I +L+ Y
Sbjct: 88 GYMSEAKGIDPDKYTFTFALKACAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCK 147
Query: 114 VKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSV 170
D+ SA Q+F+ + D+VTW T++SGL++ G EA+ +F + V + +L ++
Sbjct: 148 AGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNL 207
Query: 171 LSACSSLGSRKLGKAIHA 188
+ A S L + + +H
Sbjct: 208 IPAVSKLEKNDVCRCLHG 225
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI + +M N TF ++A + A G+ +H+ +I++G + NSL
Sbjct: 586 EEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSLIQFGFCSHTPVGNSL 645
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y I S+ + F + ++V+W T++S + G A+ +F + ++KP++
Sbjct: 646 VDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYAAHGLANCAVSLFLSMQENELKPDS 705
Query: 165 NTLVSVLSACSSLGSRKLGKAI 186
+ +SVLSAC G + GK I
Sbjct: 706 VSFLSVLSACRHAGLAEEGKRI 727
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKML---NCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
N L + TQ A +Y M CP S T L+ C+L + +G ++
Sbjct: 470 FNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSG---TMVGMLQTCALCSDYARGSCVYG 526
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHK 149
+IK+G + + ++L+ + + +A +F+ F V+W +++G G +
Sbjct: 527 QIIKHGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAE 586
Query: 150 EAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHA 188
EAI F + V +PNA T V+++ A + L + LG ++H+
Sbjct: 587 EAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHS 628
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 7/171 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P I+ NT++ L Q+ A+ L+ M + +H + + A S +
Sbjct: 160 KMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKLEKNDV 219
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+H VIK G + L+ Y D+++A +F V D +W T+++ +
Sbjct: 220 CRCLHGLVIKKGFTSAF--SSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAAYAH 277
Query: 145 CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G +E +++F DV+ N S L A + +G+ + G AIH ++++
Sbjct: 278 NGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQ 328
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG+ IH + ++ G + D+ + SL+ Y ++ A Q+F ++ DVV+W+ +I+
Sbjct: 318 KGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYE 377
Query: 144 KCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G H EAI +F I +KPNA TL SVL C+ + + +LGK+IH ++++ E+ +
Sbjct: 378 QAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELE 437
Query: 201 LDNAVL 206
AV+
Sbjct: 438 TATAVI 443
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 16 KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALK 74
+ L+++ ++ P + N++++ T++ + A+ + M + Y+FT ALK
Sbjct: 49 QDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALK 108
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC+ + +KGL IH + + G D++I +L+ Y +D+ SA Q+F+ + DVVT
Sbjct: 109 ACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVT 168
Query: 135 WTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
W T++SGL++ G A+ +F C +D+ + +L +++ A S L + + +H
Sbjct: 169 WNTMVSGLAQNGCSSAALLLFHDMRSCCVDI--DHVSLYNLIPAVSKLEKSDVCRCLHG 225
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N TF ++A + A + G+ +H+ +I+ G + NSL+ Y I S+ + F
Sbjct: 603 NAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCF 662
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ +V+W T++S + G A+ +F + ++KP++ + +SVLSAC G +
Sbjct: 663 IEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVE 722
Query: 182 LGKAI 186
GK I
Sbjct: 723 EGKRI 727
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKML---NCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
N L + TQ A +Y M CP S T L+ C+ + +G ++
Sbjct: 470 FNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSR---TMVGMLQTCAFCSDYARGSCVYG 526
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHK 149
+IK+G + + ++L++ + + +A +F+ F V+W +++G G +
Sbjct: 527 QIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAE 586
Query: 150 EAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHA 188
EA+ F + V +PNA T V+++ A + L + ++G ++H+
Sbjct: 587 EAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHS 628
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ L Q+ A+ L++ M +C +H + + A S +H VIK
Sbjct: 170 NTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIK 229
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + L+ Y D+++A +F V D +W T+++ + GF +E +++
Sbjct: 230 KGFI--FAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLEL 287
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F DV+ N S L A + +G G AIH ++++
Sbjct: 288 FDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQ 328
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
L++H +I G + N L++ Y + + IF+SV P VV W ++I G ++
Sbjct: 22 LQVHGSLIVSG----LKPHNQLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRA 77
Query: 146 GFHKEAIDMFC------GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
G H+EA+ F GID P+ + L AC+ GS K + H L
Sbjct: 78 GLHREALGFFGYMSEEKGID--PDKYSFTFALKACA--GSMDFKKGLRIHDL 125
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKML----NCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
N++L+ S+ P+ A+ Y +ML N P + +TF LK C+L + G +H
Sbjct: 47 NSMLRAFVNSNMPRRALQSYTEMLERSRNVP---DRFTFPSLLKGCALLLEFKVGKVLHG 103
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
V+KY D++I+ +LL+ Y D+ SA +F + + V WT++ISG K E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 151 AIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
A+ ++ ++ P+ T+ +++SAC+ L +G +H+H
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +++ ++ P A+ LY KM S + T + AC+ G+++H+H+
Sbjct: 147 VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI 206
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ + ++L++ Y D+ +A Q+F+ + DV W+ +I G K EA+
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEAL 266
Query: 153 DMF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F G +++PN T+++V+SAC+ LG + G+ +H + R +++ L+N+++D
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + AC+ + G +H ++ + H + + NSL+ + DI +A +IF
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIF 340
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+S+ + D+++W ++++GL+ G +EA+ F D++P+ T + VL+ACS G +
Sbjct: 341 DSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQ 400
Query: 182 LGKAI 186
GK +
Sbjct: 401 EGKKL 405
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 29 PQPHILNTLLK-LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
P + NTL K + S TP ++ Y+ ML + N +TF ++AC L ++ +
Sbjct: 65 PDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKL---EEEAKQ 121
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HAHV+K+G D + N+L+H Y + A ++F ++ P+VV+WT+++SG S+ G
Sbjct: 122 LHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGL 181
Query: 148 HKEAIDMFCGIDVKPNANTLVSVLSACSSLGSR 180
EA +F + K N+ + +++ AC G+R
Sbjct: 182 VDEAFRVFELMPCKKNSVSWNAMI-ACFVKGNR 213
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ + + + A L+ +M + + + L AC+ A ++G+ IH +V
Sbjct: 202 NAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVE 261
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K G + D + +++ Y + A +F + V +W +I G + G ++AI
Sbjct: 262 KTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIR 321
Query: 154 MFCGID----VKPNANTLVSVLSACSSLG 178
+F ++ V P++ T V+VL+AC+ G
Sbjct: 322 LFKEMEEEAMVAPDSITFVNVLTACAHSG 350
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 99/183 (54%), Gaps = 3/183 (1%)
Query: 28 IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
+P NTL++ + TP +++ L+ + P + +++T+ LKAC+ + + G
Sbjct: 60 LPPLFAWNTLIRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGT 119
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H+ +K G + N+LL+ Y + SA +F+ + DVV+W+++I+
Sbjct: 120 LHSLTLKTGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYVASNS 179
Query: 148 HKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+A +F + ++ PN+ TLVS+LSAC+ + ++G++IH++ N E ++ L A
Sbjct: 180 PLDAFYVFREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGIEMDVALGTA 239
Query: 205 VLD 207
+ +
Sbjct: 240 LFE 242
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
++L+ S++P +A ++ +M N T L AC+ + G IH++V
Sbjct: 168 SSLIAAYVASNSPLDAFYVFREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTS 227
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + +L Y +I A +FNS+ ++ + T +IS L+ G K+ I +
Sbjct: 228 NGIEMDVALGTALFEMYAKCGEIDKALLVFNSMGDKNLQSCTIMISALADHGREKDVISL 287
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F ++ ++ ++ + +LSACS +G GK +R
Sbjct: 288 FTQMEDGGLRLDSLSFAVILSACSHMGLVDEGKMYFDRMVR 328
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N +++ + + AI LY +M + + +TF LKACS A ++G +IH V
Sbjct: 69 LWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDV 128
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
I+ G D+F+ +L+ Y + SA Q+F+ + DVV W ++++ S+ G E++
Sbjct: 129 IRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESL 188
Query: 153 DMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ C + +KP T V ++A + G GK +H +S R+ E+N + A++D
Sbjct: 189 AL-CRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDM 247
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ L++C + A + G ++HA + + G + + L++ Y + +AH +F+ +
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
++ W +I G + G ++ AI ++ + + P+ T VL ACS+L + + GK
Sbjct: 64 KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123
Query: 186 IHAHSLRNLNENNIILDNAVLDF 208
IH +R+ E+++ + A++D
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDM 146
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
KI + ++ N++L +Q+ P ++ L M ++N T+ S+A +
Sbjct: 162 KIDERDVVCWNSMLATYSQNGQPDESLALCRVM-----AFNGLKPTEGTFVISIAASADN 216
Query: 85 GL-----EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
GL E+H + ++G + ++ +L+ Y + A +F + VV+W +I
Sbjct: 217 GLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMI 276
Query: 140 SGLSKCGFHKEAIDMFCGIDVK--PNANTLVSVLSACSSLGSRKLGK 184
+G + G EA+D+F + K P+ T V VL+ACS G GK
Sbjct: 277 TGYAMHGHANEALDLFKEMKGKVLPDHITFVGVLAACSHGGLLNEGK 323
>gi|414584791|tpg|DAA35362.1| TPA: hypothetical protein ZEAMMB73_898339 [Zea mays]
Length = 605
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 91/177 (51%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL + + Q I L+ +M+ + ++F+ L ++ + GL++HA ++K
Sbjct: 220 NTLLAAFARHWSVQGWI-LWRRMVREAVGADGFSFSTILSGLAVTASLAGGLQVHAQLVK 278
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D+ + NSL+ Y+ K + F + DVV+WT + +G CG +AI +
Sbjct: 279 SGFCDDVCVGNSLVEMYMKSKCLADGVMAFAEIRCKDVVSWTGLAAGCLHCGEPAKAIGI 338
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
+ V PN T + +AC+SL G+ +H + ++ +++++ ++NA++D
Sbjct: 339 LGQMMLDGVMPNNYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDVGVNNALIDM 395
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 45 STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104
P AI + +M+ N+YTF + AC+ +G ++H +VIK G D+ +
Sbjct: 330 GEPAKAIGILGQMMLDGVMPNNYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDVGVN 389
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
N+L+ Y + AH++F S+ V++WT +I + G +EA+++F + V
Sbjct: 390 NALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMAFAHNGRAREAVEVFDDMLLRGVA 449
Query: 162 PNANTLVSVLSACSSLG 178
PN TLV VL ACS G
Sbjct: 450 PNRVTLVCVLYACSQGG 466
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 41 LTQSSTPQNAIPLYNKM--LNCPSSYNHYTFTQALKACSLA-----HAHQKGLEIHAHVI 93
LTQ ++A+ L+ +M CP N + AL A SLA HA Q ++A +
Sbjct: 124 LTQGDRARDALALFRRMRLAGCPP--NEFALASALGAISLAPVGTGHARQ----LYALSV 177
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
+ G +F+ N+ L + A ++F+ D+V+W T+++ ++
Sbjct: 178 RLGFGSSVFLTNAFLAAMARHLQLEDAVRLFDGASARDIVSWNTLLAAFAR 228
>gi|356509555|ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 542
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 12/141 (8%)
Query: 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
YN +TF LK C+ + G ++HA + K G D++IQN L+H Y D+ A +
Sbjct: 66 YN-FTFPFLLKCCAPSKLPPLGKQLHALLTKLGFAPDLYIQNVLVHMYSEFGDLVLARSL 124
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLG 178
F+ + DVV+WT++ISGL EAI +F CG++V N T++SVL A + G
Sbjct: 125 FDRMPHRDVVSWTSMISGLVNHDLPVEAISLFERMLQCGVEV--NEATVISVLRARADSG 182
Query: 179 SRKLGKAIHAHSLRNLNENNI 199
+ +G+ +HA NL E I
Sbjct: 183 ALSMGRKVHA----NLEEWGI 199
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P +++ +++ L P AI L+ +ML C N T L+A + + A
Sbjct: 127 RMPHRDVVSWTSMISGLVNHDLPVEAISLFERMLQCGVEVNEATVISVLRARADSGALSM 186
Query: 85 GLEIHAHVIKYG-HLHDIF-IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G ++HA++ ++G +H + +L+ Y I ++F+ VV DV WT +ISGL
Sbjct: 187 GRKVHANLEEWGIEIHSKSNVSTALVDMYAKSGCI--VRKVFDDVVDRDVFVWTAMISGL 244
Query: 143 SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
+ G K+AIDMF ++ VKP+ T+ +VL+AC + G
Sbjct: 245 ASHGLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAG 283
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P I++ +++ + NA+ L+N+M++ N T AL+AC+ + ++
Sbjct: 266 EMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEE 325
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH + YG DI + +L+ Y+ +A ++FN + DVV+W + SG ++
Sbjct: 326 GKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAE 385
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +++ +FC + +P+A LV +L+A S LG + +HA ++ +NN +
Sbjct: 386 IGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFI 445
Query: 202 DNAVLDF 208
++++
Sbjct: 446 GASLIEL 452
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
++YT + ALK+CS + G IH +K D+F+ ++L+ Y + A ++F
Sbjct: 104 DNYTVSIALKSCSGLQKLELGKMIHG-FLKKKIDSDMFVGSALIELYSKCGQMNDAVKVF 162
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSR 180
PDVV WT+II+G + G + A+ F + V P+ TLVS SAC+ L
Sbjct: 163 TEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDF 222
Query: 181 KLGKAIHAHSLRNLNENNIILDNAVLDF 208
LG+++H R + + L N++L+
Sbjct: 223 NLGRSVHGFVKRRGFDTKLCLANSILNL 250
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Query: 17 QLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQAL 73
Q+N + P+P ++ +++ Q+ +P+ A+ +++M+ S + T A
Sbjct: 154 QMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAA 213
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
AC+ G +H V + G + + NS+L+ Y I A +F + + D++
Sbjct: 214 SACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDII 273
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+W+++++ + G A+++F + ++ N T++S L AC+S + + GK IH +
Sbjct: 274 SWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLA 333
Query: 191 LRNLNENNIILDNAVLDF 208
+ E +I + A++D
Sbjct: 334 VNYGFELDITVSTALMDM 351
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 3 VNGLKSLKPTLSFKQLNQIHAQIIKIP---QPHILNTLLKLLTQSSTPQNAIPLYNKM-- 57
++ L++ + + ++ QIH + + L+ + + +P+NAI L+N+M
Sbjct: 311 ISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPK 370
Query: 58 -----------------------------LNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
L+ + + + L A S Q+ L +
Sbjct: 371 KDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCL 430
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HA V K G ++ FI SL+ Y I +A+++F + DVVTW++II+ G
Sbjct: 431 HAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQG 490
Query: 149 KEAI----DMFCGIDVKPNANTLVSVLSACSSLG 178
+EA+ M DVKPN T VS+LSACS G
Sbjct: 491 EEALKLSHQMSNHSDVKPNDVTFVSILSACSHAG 524
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++H+ +K G D F+ L Y + AH++F V W ++ G
Sbjct: 22 QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81
Query: 147 FHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
E + +F + +P+ T+ L +CS L +LGK IH L+ ++++
Sbjct: 82 KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMF 140
Query: 201 LDNAVLDF 208
+ +A+++
Sbjct: 141 VGSALIEL 148
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+++ L+Q ++AI L+ +ML + + + L AC+ A+++G ++HAH+I
Sbjct: 475 FTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 534
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K + D+F N+L++ Y I A F+ + VV+W+ +I GL++ G K A+D
Sbjct: 535 KRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALD 594
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + + PN TL SVL AC+ G
Sbjct: 595 VFRRMVDERIAPNHITLTSVLCACNHAG 622
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/184 (25%), Positives = 92/184 (50%), Gaps = 5/184 (2%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP+ +L N L+ + ++ L+ +M S N T LK+ + A
Sbjct: 366 IPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDT 425
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA K G L D + N L+ Y + A+++F +++ +T++I+ LS+C
Sbjct: 426 TQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQC 485
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
++AI +F + ++P+ L S+L+AC+SL + + GK +HAH ++ ++
Sbjct: 486 DHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAG 545
Query: 203 NAVL 206
NA++
Sbjct: 546 NALV 549
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ +A+ L+ +M+ N + F+ + AC+ + + G ++HA V++
Sbjct: 171 NGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVR 230
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D+F N+L+ Y + DI A +F V DVV+W ISG G + A+++
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALEL 290
Query: 155 FCGID---VKPNANTLVSVL 171
+ + PN TL S+L
Sbjct: 291 LLQMKSSGLVPNVFTLSSIL 310
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 13/189 (6%)
Query: 27 KIPQP-HI-LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+ P P H+ ++L+ + ++ P+ A+ + M N + LK A
Sbjct: 62 ETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL--- 118
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLS 143
G+++HA + G DIF+ N+L+ Y + A ++F+ + V+W ++S
Sbjct: 119 GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFV 178
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL--GKAIHAHSLRNLNENN 198
K +A+++F + V+PN V++AC+ GSR L G+ +HA +R + +
Sbjct: 179 KNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACT--GSRDLEAGRKVHAMVVRTGYDKD 236
Query: 199 IILDNAVLD 207
+ NA++D
Sbjct: 237 VFTANALVD 245
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 15 FKQLNQIHAQII---KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
+ +L IH + K+P+ ++ N + Q+A+ L +M + N +T
Sbjct: 247 YSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306
Query: 70 TQALKACSLAHAHQKGL--EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
+ LKAC+ A A L +IH +IK D +I +L+ Y + A ++F +
Sbjct: 307 SSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI 366
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKL 182
D++ W +ISG S G H E++ +FC G D+ N TL +VL + +SL +
Sbjct: 367 PRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDI--NRTTLAAVLKSTASLEAISD 424
Query: 183 GKAIHA 188
+HA
Sbjct: 425 TTQVHA 430
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IHAH++K G LH +N LL FY + SA ++F+ P V+W+++++ S
Sbjct: 23 GAHIHAHLLKSGLLHAF--RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+EA+ F + V+ N L VL G LG +HA ++ +I +
Sbjct: 81 NALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGDIFV 137
Query: 202 DNAVL 206
NA++
Sbjct: 138 ANALV 142
>gi|218192568|gb|EEC74995.1| hypothetical protein OsI_11055 [Oryza sativa Indica Group]
Length = 1018
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 28 IPQPHILN---TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
IPQP + L+ L S P A+ L+ P T ++L A A +
Sbjct: 75 IPQPSLFAWNAILISLSLHSPDPSAAVRLFASSAVSPDEITLSTLLRSLAASGPALSPLV 134
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
E+HA +G D+F+ N+L+ Y D+ SA +F+ + DVV+W ++IS ++
Sbjct: 135 TGELHAVAFLWGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACAR 194
Query: 145 CGFHKEAIDMF-------C--GIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
G+++E +D+F C G V PN T+ SVL AC+ L G +H
Sbjct: 195 AGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVH 246
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 7/161 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L Q+ + + L +M+ N T + + + + H + I+
Sbjct: 286 NSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIR 345
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ I + ++L+ Y + +A ++F + WT+IIS ++ G EA+ +
Sbjct: 346 NDYDQSIRLVSALIDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSL 405
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG----SRKLGKAIHA 188
F + KP+ T +VLSAC+ G +RK+ ++ A
Sbjct: 406 FNQMITAGAKPDTVTFTTVLSACAHSGKVAEARKVFNSMQA 446
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 10/146 (6%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T T L AC+ G+ +H + G D + Y+ + Q+F
Sbjct: 222 NGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMD-------MAGYMNNGHVEEGMQLF 274
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRK 181
+ W ++I+GL + G + + + V PN+ TL V+ + S +
Sbjct: 275 RQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLL 334
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
K H +++RN + +I L +A++D
Sbjct: 335 GAKQAHGYAIRNDYDQSIRLVSALID 360
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
+++ L+Q ++AI L+ +ML + + + L AC+ A+++G ++HAH+I
Sbjct: 473 FTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
K + D+F N+L++ Y I A F+ + VV+W+ +I GL++ G K A+D
Sbjct: 533 KRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALD 592
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + + PN T+ SVL AC+ G
Sbjct: 593 VFHRMVDEHISPNHITMTSVLCACNHAG 620
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ ++ +A+ ++ +M+ N + F+ + AC+ + + G ++HA VI+
Sbjct: 171 NGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIR 230
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ D+F N+L+ Y + DI A +F V DVV+W ISG G + A+++
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALEL 290
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNII 200
+ + PN TL S+L AC+ G+ LG+ IH ++ N + +N I
Sbjct: 291 LLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYI 340
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IPQ ++ N L+ + + A+ L+ +M N T LK+ + A
Sbjct: 364 IPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDT 423
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA K G L D + N L+ Y + A+++F D++ +T++I+ LS+C
Sbjct: 424 RQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQC 483
Query: 146 GFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
++AI +F G+D P+ L S+L+AC+SL + + GK +HAH ++ +++
Sbjct: 484 DHGEDAIKLFMEMLRKGLD--PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVF 541
Query: 201 LDNAVL 206
NA++
Sbjct: 542 AGNALV 547
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 13/190 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N + Q+A+ L +M + N +T + LKAC+ + A
Sbjct: 262 KVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNL 321
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++K D +I L+ Y + A ++F+ + D+V W +ISG S
Sbjct: 322 GRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSH 381
Query: 145 CGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIH--AHSLRNLNEN 197
H EA+ +FC G DV N TL +VL + +SL + + +H A L L+++
Sbjct: 382 GAQHAEALSLFCRMRKEGFDV--NRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDS 439
Query: 198 NIILDNAVLD 207
+++ N ++D
Sbjct: 440 HVV--NGLID 447
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 13/189 (6%)
Query: 27 KIPQP-HI-LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P H+ ++L+ + ++ P++A+ + M +C N + LK A
Sbjct: 62 EIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF--- 118
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLS 143
G ++HA + G DIF+ N+L+ Y + A +F+ + V+W ++S
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKL--GKAIHAHSLRNLNENN 198
K A+ +F + V+PN V++AC+ GSR L G+ +HA +R + +
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACT--GSRDLEAGRKVHAMVIRTGYDKD 236
Query: 199 IILDNAVLD 207
+ NA++D
Sbjct: 237 VFTANALVD 245
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IHAH++K G L +F +N LL FY + SA ++F+ + P V+W+++++ S
Sbjct: 22 QGAHIHAHLLKSG-LFAVF-RNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYS 79
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
++A+ F + V+ N L VL G G +HA ++ +I
Sbjct: 80 NNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATGLGGDIF 136
Query: 201 LDNAVL 206
+ NA++
Sbjct: 137 VANALV 142
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 111/232 (47%), Gaps = 43/232 (18%)
Query: 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFT 70
T+ F+QL P N +++ T + AI ++N+ML S S + +TF
Sbjct: 59 TMIFQQLEN--------PNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFP 110
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+K+C+ + G ++HAHV K+G +N+L+ Y D+ A+Q++ +
Sbjct: 111 FVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTER 170
Query: 131 D-------------------------------VVTWTTIISGLSKCGFHKEAIDMFCGID 159
D +V+WTT+I+G ++ G + +A+ +F +
Sbjct: 171 DAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQ 230
Query: 160 V---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V +P+ +++SVL AC+ LG+ ++GK IH +S ++ N + NA+++
Sbjct: 231 VVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEM 282
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ + +A+ ++ +M + + L AC+ A + G IH + K
Sbjct: 208 TMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKS 267
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G L + + N+L+ Y I A +FN ++ DV++W+T+I GL+ G AI +F
Sbjct: 268 GFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVF 327
Query: 156 CGID---VKPNANTLVSVLSACSSLG 178
+ V PN T V VLSAC+ G
Sbjct: 328 EDMQKAGVTPNGVTFVGVLSACAHAG 353
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 7/144 (4%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
F L+ C +K IHAH++K F+ +L + + A IF +
Sbjct: 10 FVTTLRNCPKIAELKK---IHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLE 66
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGK 184
P+V ++ II + H AI +F + P+ T V+ +C+ L R+LG+
Sbjct: 67 NPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQ 126
Query: 185 AIHAHSLRNLNENNIILDNAVLDF 208
+HAH + + + I +NA++D
Sbjct: 127 QVHAHVCKFGPKTHAITENALIDM 150
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N +L Q P + L+ ML +H T L+ C + + G ++H + K
Sbjct: 439 NAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWK 498
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + FI+N L+ Y + A +IF+S+ DVV+W+T+I G ++ GF +EA+ +
Sbjct: 499 TGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALIL 558
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + ++PN T V VL+ACS +G + G ++A
Sbjct: 559 FREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYA 595
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ AI LY KML + + F +KAC+ A G ++HA VIK +
Sbjct: 141 SQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHL 200
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCG 157
QN+L+ YV + A ++F + D+++W++II+G S+ GF EA+ +M
Sbjct: 201 IAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSF 260
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
PN S L ACSSL G IH
Sbjct: 261 GVFHPNEYIFGSSLKACSSLLRPDYGSQIHG 291
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 101/201 (50%), Gaps = 4/201 (1%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYN-KMLNCPSSYNHYT 68
+ ++S Q+ + + I ++N + L ++S + A+ ++ N T
Sbjct: 7 RVSVSNSQIPATSSVVSTIKTEELMNDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRT 66
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ + ACS + + +G +IH H++ +D + N +L Y + A ++F+ +
Sbjct: 67 YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 126
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
++V++T++I+G S+ G EAI ++ + D+ P+ S++ AC+ G LGK
Sbjct: 127 ERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQ 186
Query: 186 IHAHSLRNLNENNIILDNAVL 206
+HA ++ + +++I NA++
Sbjct: 187 LHAQVIKLESSSHLIAQNALI 207
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ L + A+ ++++M N + + L A + A +G
Sbjct: 328 IERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQG 387
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSK 144
++IH+ +IK G L D+ + NSLL Y D++ +F D V+W I L+
Sbjct: 388 MQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAI---LTA 444
Query: 145 CGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
C H++ ++M + +P+ T+ ++L C + S KLG +H +S +
Sbjct: 445 CLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWK 498
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N Y F +LKACS G +IH IK + SL Y + SA ++F
Sbjct: 266 NEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVF 325
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
N + PD +W II+GL+ G+ EA+ +F + P+A +L S+L C+
Sbjct: 326 NQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLL--CAQTKPMA 383
Query: 182 LGKAIHAHSL 191
L + + HS
Sbjct: 384 LCQGMQIHSF 393
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+TL+ QS + A+ L+ +M + NH TF L ACS ++GL+++A +++
Sbjct: 540 STLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYA-IMQ 598
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-------PDVVTWTTIISGLSKCG 146
H I + H V + A + + F PDVV W T++S G
Sbjct: 599 TEH----GISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQG 653
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 5/185 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ TL+ S P+ A+ ++ +ML + +YT AL A S H+ +
Sbjct: 129 ELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKEL 188
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH + IKY D I NSL Y + A + F + +V++WTT+IS
Sbjct: 189 GKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGD 248
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G + F + V+PN TL S LS C + S +G IH+ +++ E+N+ +
Sbjct: 249 NGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPI 308
Query: 202 DNAVL 206
N+++
Sbjct: 309 KNSIM 313
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+TF+ L CS A ++G ++HA IK G L D+ + +L++ Y I A + F
Sbjct: 384 FTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVE 443
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
+ +++WT++I+G ++ G ++A+ +F + V+PN T V VLSACS G
Sbjct: 444 MSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAG 498
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHAH++K G D F+ L++ Y + +A ++F+ + +VV+WTT+++G
Sbjct: 90 KIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDS 149
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ A+ +F + P TL + LSA S L S++LGK IH +S++
Sbjct: 150 KPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIK 198
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 92/174 (52%), Gaps = 18/174 (10%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+ + +ML+ N +T T AL C + + G +IH+ IK G ++ I+NS+++
Sbjct: 255 GLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMY 314
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK-------------CGFHKEAIDMFC 156
Y+ I A ++F+ + +VTW +I+G ++ CG EA+ +F
Sbjct: 315 LYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCG--TEALSIFL 372
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++ +KP+ T SVLS CSSL + + G+ +HA +++ +++++ A+++
Sbjct: 373 KLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVN 426
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 92/173 (53%), Gaps = 3/173 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ +Q+ + A+ L+ +M + + F AL AC+ + G +IH+ V+ G
Sbjct: 29 MMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVGSG 88
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
+I I NSL++ Y +D+ A ++F+ ++ DVV+WT +++ ++ G +A++
Sbjct: 89 LTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLS 148
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+D VKPN T V+++ C+ L LG+ IH + E + IL NA++
Sbjct: 149 RMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALV 201
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ AI L +M N T+ L+AC+ A +G EIHA V+
Sbjct: 330 NAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLL 389
Query: 95 YGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G L ++ + NS++ Y +A +F ++ D V+W +I+ ++A++
Sbjct: 390 CGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALE 449
Query: 154 MFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+F G++ ++ N TL+S+L AC L KL + IH
Sbjct: 450 LFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIH 486
Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
+L + Q+ A+ ++M N TF + C+ G +IH +I G
Sbjct: 130 MLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEG 189
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
D + N+L+H Y + +F+ + V+ WTT+I+G S+ G ++E + +F
Sbjct: 190 LEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFR 249
Query: 157 GID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+D VK N T +S++ C +L + K G+ I A L +
Sbjct: 250 KMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILES 289
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +S Q+A+ L++ M N +T L+AC + +IHA
Sbjct: 432 NAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAA 491
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL--SKCGFHKEA 151
G + + NS+++ Y + A + F+S+ +V W+ I++ SK G + A
Sbjct: 492 GGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRA 551
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
F ++ +KP T VS L AC+++ + + G+++H + + E +++L N +++
Sbjct: 552 FKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIIN 611
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 4/175 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +Q+ + + ++ KM N T+ ++ C A ++G I A +++
Sbjct: 230 TMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILES 289
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ SL+ Y + A + + DVV W +++ ++ G + EAI +
Sbjct: 290 PFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLL 349
Query: 156 CGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVL 206
+D++ N T +SVL AC++L + G+ IHA L L + + + N+V+
Sbjct: 350 RRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVI 404
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 173
+ A +F+ + +V +WT +++ S+ G ++EA+++F + +P+ V L A
Sbjct: 8 VTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDA 67
Query: 174 CSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
C++ G G+ IH+ + + +NII+ N++++
Sbjct: 68 CAASGELDHGRQIHSSVVGSGLTSNIIISNSLVN 101
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ ++ + A+ L+N++ + + +TF L + KG +IHA VIK
Sbjct: 446 NTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIK 505
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N+L+ Y +I SA Q+F + +V++WT+II+G +K GF +A+++
Sbjct: 506 SGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALEL 565
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + V+PN T ++VLSACS +G
Sbjct: 566 FHKMLEEGVRPNEVTYIAVLSACSHVG 592
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVK-DIFSAHQ 122
N Y F A +ACS A G I VIK G+L D+ + L+ +V + D+ SA +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + + VTWT +I+ L + G+ EAID+F + +P+ TL V+SAC+++
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAV 205
LG+ +H+ ++R + + LD V
Sbjct: 287 LLLGQQLHSQAIR----HGLTLDRCV 308
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 18/201 (8%)
Query: 1 MFVNGLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKL--LTQSSTPQNAIPLYNKML 58
MFV G L +FK K+P+ + + L + L Q AI L+ M+
Sbjct: 213 MFVKGRGDLVS--AFKVFE-------KMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMI 263
Query: 59 NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK--- 115
+ +T + + AC+ G ++H+ I++G D + L++ Y
Sbjct: 264 FSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISG-LSKCGFHKEAIDMFCGI---DVKPNANTLVSVL 171
+ +A +IF+ ++ +V +WT +I+G + K G+ +EA+D+F G+ V PN T S L
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383
Query: 172 SACSSLGSRKLGKAIHAHSLR 192
AC++L + ++G+ + H+++
Sbjct: 384 KACANLAALRIGEQVFTHAVK 404
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L+ M+ NH+TF+ LKAC+ A + G ++ H +K G + NSL
Sbjct: 358 EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 164
+ Y I A + F+ + +++++ T+I +K +EA+++F I+ + +A
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
T S+LS +S+G+ G+ IHA +++
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKS 506
>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 679
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 7/163 (4%)
Query: 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
L+ T+S+ + AI Y M+ S + Y F LKA + G +IHAHV+KYG+
Sbjct: 49 LRFNTRSNLFREAISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGY 108
Query: 98 -LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF- 155
+ I NSL++FY ++ +++F+ + D+V+W ++IS + + A++ F
Sbjct: 109 ESSSVAIANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFR 168
Query: 156 --CGIDVKPNANTLVSVLSACSSLGSR---KLGKAIHAHSLRN 193
D++P++ TLVS + ACS+L +LGK IH + RN
Sbjct: 169 FMLAEDLEPSSFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRN 211
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN----CPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90
N ++ Q+ + A+ L+ +M+ CP++ + A C + + IH
Sbjct: 353 NAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKE---SIHG 409
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150
+VIK D ++QN+L+ Y ++ + + IF+S+ D+V+W T+I+G G + +
Sbjct: 410 YVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYND 469
Query: 151 AIDMFC-------GID---------VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
A+ M GI+ KPN+ TL++VL C+SL + GK IHA+++RN
Sbjct: 470 ALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAVRNA 529
Query: 195 NENNIILDNAVLD 207
+ + + +A++D
Sbjct: 530 LASEVTVGSALVD 542
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK---GLEIHAH 91
N+L+ ++ + A+ + ML + +T + ACS H+ G +IH +
Sbjct: 148 NSLISAFCRAQEWELALEAFRFMLAEDLEPSSFTLVSPVIACSNLRKHEGLRLGKQIHGY 207
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ GH F N+L+ Y + + A +F ++++W T+IS S+ EA
Sbjct: 208 CFRNGHW-STFTNNALMTMYANLGRLDDAKFLFKLFEDRNLISWNTMISSFSQNERFVEA 266
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR--NLNENNII 200
+ + VKP+ TL SVL ACS L GK IHA++LR +L EN+ +
Sbjct: 267 LMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGKEIHAYALRSGDLIENSFV 320
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T L C+ A KG EIHA+ ++ ++ + ++L+ Y + + ++F
Sbjct: 498 NSITLMTVLPGCASLAALAKGKEIHAYAVRNALASEVTVGSALVDMYAKCGCLNLSRRVF 557
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--------DVKPNANTLVSVLSACSS 176
+ + +V+TW I+ G +EA+++F + +VKP T++++L+ACS
Sbjct: 558 DQMPIKNVITWNVIVMAYGMHGNGEEALELFKDMVAKGDNVGEVKPTEVTMIAILAACSH 617
Query: 177 LG 178
G
Sbjct: 618 SG 619
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
T L ACS G EIHA+ ++ G L + F+ ++L+ Y + S ++F+
Sbjct: 284 TLASVLPACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDG 343
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLGSRKL 182
++ W +I+G ++ ++A I+M + PN T+ S++ A + S
Sbjct: 344 ILERKTGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFS 403
Query: 183 GKAIHAHSLRNLNENNIILDNAVLD 207
++IH + ++ E + + NA++D
Sbjct: 404 KESIHGYVIKRDLERDRYVQNALMD 428
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 28 IPQPHIL--NTLLKLLTQSST-----PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
+P P+++ N ++ Q T A+ L+ +M + + +TF+ LKACS
Sbjct: 205 MPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIE 264
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
A + G +IHA + KY D FI N+L+ Y I + F+S DVV+WT++I
Sbjct: 265 AFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIV 324
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
G + G + + +F + KP+ T+ +LSAC++L + K G+ IHA++++ N
Sbjct: 325 GHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGN 384
Query: 198 NIILDNA 204
I+ N+
Sbjct: 385 FTIIQNS 391
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 2 FVNGLKSLKPTLSFKQLNQIHAQIIKI---PQPHILNTLLKLLTQS-----------STP 47
F + LK+ +F+ QIHAQI K I N L++L + S STP
Sbjct: 253 FSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP 312
Query: 48 --------------------QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87
+ + L++++L + +T + L AC+ A + G +
Sbjct: 313 KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQ 372
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHA+ IK G + IQNS + Y DI SA+ F PD+V+W+ +IS ++ G
Sbjct: 373 IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGC 432
Query: 148 HKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
KEA+D+F G + PN T + VL ACS G
Sbjct: 433 AKEAVDLFELMKGSGIAPNHITFLGVLVACSHGG 466
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC--SLAHAHQKGLEIHAHV 92
N+L+ + + + L KML + N Y ALKAC + + + + G +H
Sbjct: 111 NSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCA 170
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC-----GF 147
+K G D+ + +LL Y + D+ A +IF + P+VV + +I+G + F
Sbjct: 171 VKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEF 230
Query: 148 HKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
EA+ +F + +KP+ T S+L ACS++ + + GK IHA + +++ + NA
Sbjct: 231 ANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNA 290
Query: 205 VLDF 208
+++
Sbjct: 291 LVEL 294
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ TQ + L+ + + +TF+ AL C + G IHA +
Sbjct: 10 NSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITV 69
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + NSL+ Y I A +F S D V+W ++I+G + G + E + +
Sbjct: 70 SGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRL 129
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKL--GKAIHAHSLRNLNENNIILDNAVLD 207
+ + N+ L S L AC S S + GK +H +++ + ++++ A+LD
Sbjct: 130 LVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLD 187
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
+VV+W ++ISG ++ GF+ E +++F D++ + T + LS C +LG+ IH
Sbjct: 5 NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIH 64
Query: 188 AHSLRNLNENNIILDNAVLD 207
A + ++L N+++D
Sbjct: 65 ALITVSGLGGPVLLTNSLID 84
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 102/187 (54%), Gaps = 11/187 (5%)
Query: 28 IPQPHI--LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IP P N LL+ L + P +A+ + +L+ P + TF+ +L A + A A +
Sbjct: 64 IPHPSTNDFNALLRGLARGPHPTHALTFLSTILH-PDAL---TFSFSLIASARALALSET 119
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH+H+++ G DI + +L+ Y D+ SA ++F+ + DV W +I+GL++
Sbjct: 120 SQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQG 179
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN-NIIL 201
EA+ +F + K N +++ L+ACS LG+ + G+ +HA +R ++ + N+ +
Sbjct: 180 SKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHA-CVRKMDLDINVQV 238
Query: 202 DNAVLDF 208
NAV+D
Sbjct: 239 CNAVIDM 245
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ L Q S A+ L+N+M N + AL ACS A + G +HA V K
Sbjct: 170 NALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRK 229
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAID 153
++ + N+++ Y ++F+++ VVTW T+I + G A++
Sbjct: 230 MDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALE 289
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLG 178
+F + V+ ++ T ++VL AC+ G
Sbjct: 290 LFEEMGKTQVEMDSVTYLAVLCACNHAG 317
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 101/186 (54%), Gaps = 6/186 (3%)
Query: 28 IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+P N+++ Q + ++ + KM N Y+F AL AC+ G
Sbjct: 107 MPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMG 166
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA V K + D+++ ++L+ Y + A ++F+ ++ ++VTW ++I+ +
Sbjct: 167 TQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQN 226
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIIL 201
G EA+++F + ++P+ TL SV+SAC+SL + K G IHA ++ N ++++L
Sbjct: 227 GPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVL 286
Query: 202 DNAVLD 207
NA++D
Sbjct: 287 GNALVD 292
Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 37/172 (21%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ TQ+ + A+ L+ ++L S + HYTF LK+
Sbjct: 350 NALIAGYTQNGENEEALRLF-RLLKRESIWPTHYTFGNLLKS------------------ 390
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
DIF+ NSL+ Y+ I ++F + D V+W II G ++ G+ EA+
Sbjct: 391 ------DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQ 444
Query: 154 MF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+F CG KP+ T++ VL ACS G + G+ H ++ E+ +I
Sbjct: 445 IFRKMLVCG--EKPDHVTMIGVLCACSHAGLVEEGR----HYFFSMEEHGLI 490
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q+ A+ ++ +M++ + T + AC+ A ++GL+IHA V+K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
D + + N+L+ Y + A ++F+ + +VV+ T+++SG ++ K A
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336
Query: 154 MF 155
MF
Sbjct: 337 MF 338
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 34/177 (19%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N F + L +C + + + +HA ++ +IFIQN L+ Y + A ++F
Sbjct: 14 NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-------------------------- 158
+ + + TW ++IS L+K GF EA +F +
Sbjct: 74 DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133
Query: 159 --------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D N + S LSAC+ L +G +HA ++ ++ + +A++D
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 31/150 (20%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ ++ KML C +H T L ACS HA +++
Sbjct: 427 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACS-----------HAGLVE 475
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G H F H + +KD +T ++ L + G EA ++
Sbjct: 476 EGR-HYFFSMEE--HGLIPLKD-----------------HYTCMVDLLGRAGCLNEAKNL 515
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ V P+A S+L+AC G+ ++GK
Sbjct: 516 IEAMPVNPDAVVWGSLLAACKVHGNIEMGK 545
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 101/186 (54%), Gaps = 6/186 (3%)
Query: 28 IPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+P N+++ Q + ++ + KM N Y+F AL AC+ G
Sbjct: 107 MPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMG 166
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA V K + D+++ ++L+ Y + A ++F+ ++ ++VTW ++I+ +
Sbjct: 167 TQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQN 226
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIIL 201
G EA+++F + ++P+ TL SV+SAC+SL + K G IHA ++ N ++++L
Sbjct: 227 GPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVL 286
Query: 202 DNAVLD 207
NA++D
Sbjct: 287 GNALVD 292
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N L+ TQ+ + A+ L+ ++L S + HYTF L AC+ G + H HV+
Sbjct: 350 NALIAGYTQNGENEEALRLF-RLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVL 408
Query: 94 KYGHL------HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
K G DIF+ NSL+ Y+ I ++F + D V+W II G ++ G+
Sbjct: 409 KQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGY 468
Query: 148 HKEAIDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
EA+ +F CG KP+ T++ VL ACS G + G+ H ++ E+ +I
Sbjct: 469 GAEALQIFRKMLVCG--EKPDHVTMIGVLCACSHAGLVEEGR----HYFFSMEEHGLI 520
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 41/214 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q+ A+ ++ +M++ + T + AC+ A ++GL+IHA V+K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276
Query: 95 YGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
D + + N+L+ Y + A ++F+ + +VV+ T+++SG ++ K A
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336
Query: 154 MFCGI----------------------------------DVKPNANTLVSVLSACSSLGS 179
MF + + P T ++LSAC++L
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLAD 396
Query: 180 RKLGKAIHAHSLR------NLNENNIILDNAVLD 207
LG+ H H L+ + E++I + N+++D
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLID 430
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 34/177 (19%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N F + L +C + + + +HA ++ +IFIQN L+ Y + A ++F
Sbjct: 14 NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-------------------------- 158
+ + + TW ++IS L+K GF EA +F +
Sbjct: 74 DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133
Query: 159 --------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D N + S LSAC+ L +G +HA ++ ++ + +A++D
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 31/150 (20%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ ++ KML C +H T L ACS HA +++
Sbjct: 457 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACS-----------HAGLVE 505
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G H F H + +KD +T ++ L + G EA ++
Sbjct: 506 EGR-HYFFSMEE--HGLIPLKD-----------------HYTCMVDLLGRAGCLNEAKNL 545
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ V P+A S+L+AC G+ ++GK
Sbjct: 546 IEAMPVNPDAVVWGSLLAACKVHGNIEMGK 575
>gi|357114601|ref|XP_003559087.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic-like [Brachypodium distachyon]
Length = 719
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
++ H + P+ ++ ++ +Q+ Q A+ ++ M + N +TF + A
Sbjct: 223 MDHAHTVLCSTPETDVVLWTAMISGYSQAGDLQTALQMFRYMEHAAMLPNAFTFAGVITA 282
Query: 76 CSLA---HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD-IFSAHQIFNSVVFPD 131
CS + A Q G ++HA V K+ HDI + N+L+ FY + FN+V P+
Sbjct: 283 CSSSVQPLAIQTGRQLHARVFKFALEHDISVCNALVDFYSKSSTCLLDLLHTFNAVDRPN 342
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
VV+WT I+GL++ G ++A F + V+PN+ T+ ++L CSS S IHA
Sbjct: 343 VVSWTAFIAGLARHGRDEDAFAAFAEMRAGGVQPNSFTISTLLKGCSSSQSFLHATKIHA 402
Query: 189 HSLRNLNEN-NIILDNAVLDF 208
+ L+ +E+ N+ + N++++
Sbjct: 403 YVLKTSSESLNVAVGNSLVNL 423
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
++ L ++ A+ LY +ML H+TF L C+ + G ++HA +++
Sbjct: 143 MMSALLRAGDWAQALALYTRMLAAAVPPTHHTFATLLALCASRRLCRHGRQLHAQFLRWQ 202
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
++ ++ +L+H Y + AH + S DVV WT +ISG S+ G + A+ MF
Sbjct: 203 VDLNLVLKTALVHMYSRCGFMDHAHTVLCSTPETDVVLWTAMISGYSQAGDLQTALQMFR 262
Query: 157 GID---VKPNANTLVSVLSACSSLG---SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++ + PNA T V++ACSS + + G+ +HA + E++I + NA++DF
Sbjct: 263 YMEHAAMLPNAFTFAGVITACSSSVQPLAIQTGRQLHARVFKFALEHDISVCNALVDF 320
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+L K L Q P A+ + M + + ++ L A + + + G ++H +K
Sbjct: 451 SLAKGLNQIGLPNKALGMIIHMFHEKVHIDGFSLACFLSAAATLASVEPGKQLHCCSVKL 510
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G + + NSL++ Y K + A +F S+ P VV+W +ISGL+ G + EA+ F
Sbjct: 511 GLNSQLSVSNSLINMYSQCKCLEDATCVFQSIKEPSVVSWNALISGLASNGCYYEALSAF 570
Query: 156 ---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
+ V+P+ T VL ACS G +G + H S++ L
Sbjct: 571 EDMALVGVQPDGVTFSIVLYACSHGGFIDIGIS-HFSSMKTL 611
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 41/225 (18%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPH---ILNTLLKLLTQSST------------------ 46
S++P L+ + Q+HA++ K H + N L+ ++SST
Sbjct: 286 SVQP-LAIQTGRQLHARVFKFALEHDISVCNALVDFYSKSSTCLLDLLHTFNAVDRPNVV 344
Query: 47 --------------PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
++A + +M N +T + LK CS + + +IHA+V
Sbjct: 345 SWTAFIAGLARHGRDEDAFAAFAEMRAGGVQPNSFTISTLLKGCSSSQSFLHATKIHAYV 404
Query: 93 IKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKE 150
+K ++ + NSL++ Y + A + ++ F D T+T++ GL++ G +
Sbjct: 405 LKTSSESLNVAVGNSLVNLYSRFARMDDAWAVATTMAFVRDSFTYTSLAKGLNQIGLPNK 464
Query: 151 AIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
A+ M + V + +L LSA ++L S + GK +H S++
Sbjct: 465 ALGMIIHMFHEKVHIDGFSLACFLSAAATLASVEPGKQLHCCSVK 509
>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 676
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L Q+ + A+ ++ +M+ C S NH+TF+ L ACS + G +IHA +K G +
Sbjct: 279 LVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGN 338
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CG 157
++ +L+H Y ++ A +F S+ DVV+ T+I ++ GF EA+++F
Sbjct: 339 KYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKK 398
Query: 158 IDVKPNANTLVSVLSACSSLG 178
+ KPN T +S+L AC++ G
Sbjct: 399 LGHKPNVVTFISILLACNNAG 419
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P HI+ N+++ + AI LY+ ML + YTF+ KA S ++
Sbjct: 60 EMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSRE 119
Query: 85 GLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G + H + G + D F+ ++ Y + A +F+ V+ DVV +T +I G +
Sbjct: 120 GQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYN 179
Query: 144 KCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ G EA+++F G +KPN TL SVL +C +LG GK IH
Sbjct: 180 QRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHG 227
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ M+ N YT L +C G IH V+K G + Q SLL
Sbjct: 187 ALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLT 246
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNA 164
Y + + ++FNS+ + VTWT+ I GL + G + A+ MF C I PN
Sbjct: 247 MYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSI--SPNH 304
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S+L ACSSL + G+ IHA +++ + N +D A++
Sbjct: 305 FTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALI 346
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H H++K G L F + L+ Y+ I A ++F+ + +VTW ++IS G
Sbjct: 23 LHTHILKSGSLFSFF-GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGK 81
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
KEAI+++ + V P+A T ++ A S +G + G+ H
Sbjct: 82 TKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHG 125
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 99/190 (52%), Gaps = 7/190 (3%)
Query: 23 AQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
AQ + P ++L T+++ ++ P +A+ L+ ++L + T A+KA + + +
Sbjct: 89 AQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSP 148
Query: 83 QKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
+ IH K G + + + N+L+H Y + + A ++F+ + DVV+WTT++ G
Sbjct: 149 AEA--IHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDG 206
Query: 142 LSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G EA +FC + V PN TLV+ SA +G LG+ +H + +
Sbjct: 207 YARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRM 266
Query: 198 NIILDNAVLD 207
++ L+NA++D
Sbjct: 267 SVNLENALVD 276
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 36/208 (17%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
TL+ + P A ++ +M+ + N T A A G +H V++
Sbjct: 202 TLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVE 261
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG-------- 146
G + ++N+L+ + + SA +IF+ + DV +WT+++S +KCG
Sbjct: 262 SGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKL 321
Query: 147 -----------------------FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSR 180
+EA+ +F V+P TLVSVLSAC+ LG
Sbjct: 322 FKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCL 381
Query: 181 KLGKAIH-AHSLRNLNENNIILDNAVLD 207
+G+ ++ A+ + + E + L NA +D
Sbjct: 382 DVGRCLYDAYIVSHKVELTVNLSNAFID 409
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH-AHVIKYGHLHD 100
+Q++ P+ A+ ++N M+ T L AC+ G ++ A+++ +
Sbjct: 341 SQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELT 400
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---G 157
+ + N+ + + D+ +A ++F ++ +VV+W T+I + G +EA+ +F
Sbjct: 401 VNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKA 460
Query: 158 IDVKPNANTLVSVLSACSSLG 178
I + P+ T + VLSACS G
Sbjct: 461 IGIFPDEITYIGVLSACSHSG 481
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A L+N++ + + +TF L + A KG +IH ++K
Sbjct: 94 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 153
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + I N+L+ Y +I +A Q+FN + +V++WT++I+G +K GF A++M
Sbjct: 154 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 213
Query: 155 F---CGIDVKPNANTLVSVLSACSSLG 178
F KPN T V+VLSACS +G
Sbjct: 214 FHKMLETGTKPNEITYVAVLSACSHVG 240
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---D 159
+ NSL+ Y + A + F+ + ++V++ I+ G +K +EA +F I
Sbjct: 61 VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120
Query: 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+ +A T S+LS +S+G+ G+ IH L+ ++N + NA++
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 167
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 105/202 (51%), Gaps = 12/202 (5%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F L++ ++P ++++ T++ + S+ A+ ML N YT++
Sbjct: 62 VKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYS 121
Query: 71 QALKAC-SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
L+AC L + Q +H ++K G D+F++++L+ Y + + A +FN ++
Sbjct: 122 SVLRACDGLLNLRQ----LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMIT 177
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+V W +II G ++ E + ++ + D + +TL SVL AC+ L +LG+ +
Sbjct: 178 GDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQV 237
Query: 187 HAHSLRNLNENNIILDNAVLDF 208
H H L+ + ++IL+NA+LD
Sbjct: 238 HVHVLK--YDQDLILNNALLDM 257
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ Q+S + LY +M + T T L+AC+ + G ++H HV
Sbjct: 182 VWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHV 241
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVTWTTIISGLSKCGFHKEA 151
+KY D+ + N+LL Y + A+ +F ++ DV++W+T+I+GL++ GF +A
Sbjct: 242 LKYDQ--DLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADA 299
Query: 152 IDMFCGIDV---KPNANTLVSVLSACSSLG 178
+ +F + KPN T++ VL ACS G
Sbjct: 300 LKLFEAMKSKGPKPNYITILGVLFACSHAG 329
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
S + T+++ +K C + A Q+ +H HV G+ F+ N+L++ YV + A
Sbjct: 13 SADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARN 72
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAID---MFCGIDVKPNANTLVSVLSACSSLGS 179
+F+ + +VV+WTT+IS S + +A+D + V+PN T SVL AC L +
Sbjct: 73 LFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLN 132
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +H L+ E+++ + +A++D
Sbjct: 133 L---RQLHGSILKVGLESDVFVRSALID 157
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ +Q+ A+ L+++M N TF A++ACS KG IH +I
Sbjct: 475 NCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIV 534
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ +D++I +L+ Y D+ +A ++F+S+V VV+W+T+I+ G A +
Sbjct: 535 TGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSL 594
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + ++KPN T +++LSAC GS K GK
Sbjct: 595 FHKMVLSNIKPNEVTFMNILSACRHAGSVKEGK 627
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
Q G +IH HV+K G D F+QNSL+ Y SA+ IFN + +V W +I G
Sbjct: 423 QFGQQIHGHVMKRGFF-DEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGF 481
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
S+ G EA+ +F + ++ N T +S + ACS+LG GK IH + N+N++
Sbjct: 482 SQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDL 541
Query: 200 ILDNAVLD 207
+D A++D
Sbjct: 542 YIDTALVD 549
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 94/200 (47%), Gaps = 11/200 (5%)
Query: 4 NGLKSLKPTLSFKQLNQIHAQIIKI-----PQPHILNTLLKLLTQSSTPQNAIPLYNKML 58
N L S K S+ Q+ + + + P + + L+K + + + L+N +
Sbjct: 32 NPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHI 91
Query: 59 NCPSSYNH---YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115
S + + ++A + G ++H ++K G D I SL+ Y +
Sbjct: 92 QMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELC 151
Query: 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 172
+ A ++F+ + D+V W++IIS + G ++E ++MF + ++P++ L+SV
Sbjct: 152 FLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAE 211
Query: 173 ACSSLGSRKLGKAIHAHSLR 192
AC +G +L K++H + +R
Sbjct: 212 ACGKIGCLRLAKSVHGYVMR 231
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
+AC + +H +V++ G + D + NSL+ Y + A ++F +
Sbjct: 211 EACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTS 270
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
WT++IS ++ +EA+D+F + +V+PN T++SVL++C+ LG K GK++H
Sbjct: 271 CWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFV 330
Query: 191 LRN-LNENNIILDNAVLDF 208
LRN + + L A++DF
Sbjct: 331 LRNAMGVTGLDLGPALIDF 349
Score = 45.1 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ Q+ + A+ ++ KM + N T L +C+ ++G +H V++
Sbjct: 274 SMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRN 333
Query: 96 GH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + + +L+ FY + S ++ +S+ ++V+W T+IS ++ G + EA+
Sbjct: 334 AMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAF 393
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + K P++ +L S +SA +S GS + G+ IH H ++
Sbjct: 394 FACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMK 434
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 21/201 (10%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P ++ L+ L S + I LY +M+N + Y T LKAC A ++G E+
Sbjct: 93 PNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREV 152
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT-------------- 134
H+ V+K G + I+ L+ Y A ++F+ + DVV
Sbjct: 153 HSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIK 212
Query: 135 ----WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
WT +I GL + G A+++F + DV PN T+V VLSACS LG+ +LG+ +
Sbjct: 213 DTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVR 272
Query: 188 AHSLRNLNENNIILDNAVLDF 208
++ ++ E N + A+++
Sbjct: 273 SYMDKHRIELNHFVGGALINM 293
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
++ L ++ A+ ++ M N T L ACS A Q G + +++ K+
Sbjct: 219 AMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKH 278
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ F+ +L++ Y DI A ++F + +V+T+ ++I G + G EA+++F
Sbjct: 279 RIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELF 338
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAI 186
G+ P++ T V VL+ACS G +LG I
Sbjct: 339 RGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEI 372
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
I+A +I+ H D F+ LL + I A +IF+ P+V +T +I GL +
Sbjct: 51 IYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCY 110
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ + I ++ + + P++ + SVL AC + K G+ +H+ L+
Sbjct: 111 YTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLK 158
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ LY+ ML ++ T ++AC+ + G+++H IK+ ++D+FI N+LL+
Sbjct: 246 ALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLN 305
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y + S+ +FN+V D W ++IS GFH EAI +F + +K + T
Sbjct: 306 MYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRT 365
Query: 167 LVSVLSACSSLGSRKL-GKAIHAHSLRNLNENNIILDNAVL 206
+ +LS C+ L + G+ +HAH++++ E + L NA+L
Sbjct: 366 IAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALL 406
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
LSF L+ Q + N+++K T+ + Y +M + + + T
Sbjct: 7 LSFHGLSSTPEQTHLVNVSKDWNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLV 66
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
LKAC +A G+ IH+ + ++D+ + +L+ FY + A ++F + D+
Sbjct: 67 LKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDL 126
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+W +ISG C +KEA+ +F + + PN+ T+V++L AC + +LG+ IH +
Sbjct: 127 VSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGY 186
Query: 190 SLRN 193
LRN
Sbjct: 187 CLRN 190
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 107/229 (46%), Gaps = 41/229 (17%)
Query: 17 QLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQ------NAIP-----LYNKMLNCPSSYN 65
QL+Q+ + I ILN LL + + + + + NA+P L+N M+ SSY
Sbjct: 283 QLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMI---SSYI 339
Query: 66 HYTF-TQA----------------------LKACS-LAHAHQKGLEIHAHVIKYGHLHDI 101
+ F +A L C+ L G +HAH +K G D
Sbjct: 340 GFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDA 399
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGI 158
++ N+LL YV I +A +F + DV++W T+IS ++ F +A ++F C
Sbjct: 400 YLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCES 459
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
++K N+ T+VS+L+ C G++IH +++N E N L+ ++ +
Sbjct: 460 EIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTE 508
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT++ QS A L+ M +N YT L C G IH IK
Sbjct: 434 NTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIK 493
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + SL Y+ D +A +F D+V+W ++IS K +A+ +
Sbjct: 494 NGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLL 553
Query: 155 FCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
F + +++PN+ T++++L++C+ L LG+ +HA++ R
Sbjct: 554 FNHMISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRR 594
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 96/188 (51%), Gaps = 7/188 (3%)
Query: 26 IKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+++P+ ++ N L+ + A+ L+ +M + N T L AC +
Sbjct: 119 VEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELR 178
Query: 84 KGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G EIH + ++ G D ++ +L+ FY+ + S H++F+ ++ ++V+W II+G
Sbjct: 179 LGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLS-HRVFSLMLVRNIVSWNAIITGF 237
Query: 143 SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
G +A+ ++ + +K +A T++ V+ AC+ G +LG +H +++ N++
Sbjct: 238 LNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDL 297
Query: 200 ILDNAVLD 207
+ NA+L+
Sbjct: 298 FILNALLN 305
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS-LAHAHQ 83
+ PQ ++ N+L+ ++ A+ L+N M++ N T L +C+ LAH
Sbjct: 525 RCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMIS-ELEPNSVTIINILTSCTQLAHL-P 582
Query: 84 KGLEIHAHVIKY--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISG 141
G +HA+ + D + N+ + Y + A +IF ++ +V+W +I+G
Sbjct: 583 LGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITG 642
Query: 142 LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G ++A F + KPN + SVLSACS G
Sbjct: 643 YGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSG 682
>gi|302800421|ref|XP_002981968.1| hypothetical protein SELMODRAFT_228785 [Selaginella moellendorffii]
gi|300150410|gb|EFJ17061.1| hypothetical protein SELMODRAFT_228785 [Selaginella moellendorffii]
Length = 637
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 4/176 (2%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N++L+ + AI L+++M N P+ N +FT A+ ACS +KG IHA +
Sbjct: 82 FNSMLRAYVLAGLQCEAIDLFDQMPNDPAP-NAVSFTTAIGACSALGWIEKGAAIHARLA 140
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D+ + +L++ Y A ++F S+ VVTW+ +I+ ++ G +EA D
Sbjct: 141 GTGLETDVGLATALVNMYGKRGLFDMATKVFESMTAKTVVTWSALIAAYAQHGHAEEAFD 200
Query: 154 MFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
++ + KPN T +SVLSACS++ + G+ IH+ + + +++L N VL
Sbjct: 201 LYRRMMREGSKPNEVTFLSVLSACSTMRWLERGREIHSEIVNLGLDRSLVLMNTVL 256
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ L+ Q + A LY +M+ S N TF L ACS ++G EIH+ ++
Sbjct: 183 SALIAAYAQHGHAEEAFDLYRRMMREGSKPNEVTFLSVLSACSTMRWLERGREIHSEIVN 242
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + + N++L Y+ + + A + F ++ D+ +W II+ ++ G + A+ +
Sbjct: 243 LGLDRSLVLMNTVLTMYIKCRSLDEAGEFFAAMASRDLKSWMFIIAANAQQGRPERALAL 302
Query: 155 FCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
F + ++P+ SVL+ACS+ G+AIH L E ++ A++DF
Sbjct: 303 FRSLLEERDPTLQPDEVIFASVLNACSTKKWSDDGRAIHRIIPPRL-EATAVIGTALVDF 361
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 43 QSSTPQNAIPLYNKMLN--CPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99
Q P+ A+ L+ +L P+ + F L ACS G IH +I
Sbjct: 292 QQGRPERALALFRSLLEERDPTLQPDEVIFASVLNACSTKKWSDDGRAIH-RIIPPRLEA 350
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
I +L+ FY D+ +A F +V DV W II + ++EA+++F ++
Sbjct: 351 TAVIGTALVDFYSNCGDLANAKAAFARIVAKDVAAWNAIIGACIQHRLYEEALEIFYRMN 410
Query: 160 VK----PNANTLVSVLSACS---SLGS--RKLGKAIHA 188
V+ PN T V++L AC+ SLG+ RKL + I A
Sbjct: 411 VEGCSLPNHRTFVALLEACTESPSLGAAGRKLYERIVA 448
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF-IQNSLLHFYVTVKDIFSAHQI 123
N TF + AC + ++G +H ++ G H + + N+++H Y I A +
Sbjct: 9 NAITFLNLIVACGSSGDLKRGRILHDRIVSCGFDHQLANLGNAIVHMYGRSGSIAEARRA 68
Query: 124 FNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGS 179
F ++ V ++ +++ G EAID+F + D PNA + + + ACS+LG
Sbjct: 69 FLAIPSRLKSVASFNSMLRAYVLAGLQCEAIDLFDQMPNDPAPNAVSFTTAIGACSALGW 128
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ G AIHA E ++ L A+++
Sbjct: 129 IEKGAAIHARLAGTGLETDVGLATALVN 156
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHA-HQKGLEIHAHV 92
N ++ Q + A+ ++ +M + S NH TF L+AC+ + + G +++ +
Sbjct: 387 NAIIGACIQHRLYEEALEIFYRMNVEGCSLPNHRTFVALLEACTESPSLGAAGRKLYERI 446
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G+ + + +++ + + + A +F + D+V+WT II+ ++ G EA
Sbjct: 447 VASGYELGLVLGTGIINMFAKLGSLDRARDVFARMPIKDLVSWTAIIAAHTRSGARVEAR 506
Query: 153 DMFCGIDVK---PNANTLVSVLSACSSLG 178
+++ + ++ P+ T +S+LS+C+ G
Sbjct: 507 ELYWMMALQGLEPDEVTYISILSSCAHAG 535
>gi|297745998|emb|CBI16054.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 9/171 (5%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK----GLE 87
++ N L + LT + + + LY +M + +T+T LKAC + A G E
Sbjct: 145 YVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGRE 204
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IH H++++G + I +LL Y + +A ++F+ + +VV+W+ +I+ SK G
Sbjct: 205 IHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGK 264
Query: 148 HKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
EA+++F + D+ PN+ T+VSVL AC++L + + GK +H + LR
Sbjct: 265 PLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRR 315
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
LN L++L+Q P +T+ + +C+ ++ +G+++H H+I
Sbjct: 63 LNQALQVLSQEPNP-----------------TQHTYELLILSCTRQNSLPQGIDLHRHLI 105
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D F+ L++ Y + I +A ++F+ + W + L+ G+ +E +D
Sbjct: 106 HDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLD 165
Query: 154 MFC---GIDVKPNANTLVSVLSACSSLGSRKL------GKAIHAHSLRNLNENNIILDNA 204
++ I V + T VL AC + S G+ IH H LR+ E ++ +
Sbjct: 166 LYRRMNRIGVPSDRFTYTYVLKAC--VASEAFVSLLLNGREIHGHILRHGFEGHVHIMTT 223
Query: 205 VLDF 208
+LD
Sbjct: 224 LLDM 227
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q+ A+ L+++ML+ S + + +T T L AC+ + G ++HA+++
Sbjct: 265 NAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYIL 324
Query: 94 KYGHLHDIFIQNSL---------------------------------LHFYVTVKDIFSA 120
+ ++ + N+L L YV + D+ SA
Sbjct: 325 RTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 384
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACS 175
++F + DVV WT +I G + G + EAID+F CG + PN+ TL +VLS C+
Sbjct: 385 REMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE--PNSYTLAAVLSVCA 442
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
SL GK IH ++R+L E + + NA++
Sbjct: 443 SLACLDYGKQIHCRAIRSLLEQSSSVSNAII 473
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 35/176 (19%)
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF- 124
+T T L +C++ A G ++H+ V+K G + + NS+L+ Y D +A +F
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 223
Query: 125 ----------NSVV------------------FPD--VVTWTTIISGLSKCGFHKEAIDM 154
N++V PD +V+W +I+G ++ G +A+ +
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 283
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + + P+ T+ SVLSAC++LG+ ++GK +HA+ LR N + NA++
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALI 339
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ AI L+ M+ C N YT L C+ G +IH I+
Sbjct: 408 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 467
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ N+++ Y A ++F+ V + + +TWT++I L++ G +EA+ +F +
Sbjct: 468 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 527
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGK 184
V+P+ T V VLSACS G GK
Sbjct: 528 GVEPDRITYVGVLSACSHAGFVNEGK 553
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID 159
++F NSLL + + A +F + D V+WT ++ GL++ G EAI +
Sbjct: 97 NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156
Query: 160 V---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
P TL +VLS+C+ + +G+ +H+ ++
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK 192
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 31/163 (19%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ L Q + A+ L+ +ML + T+ L ACS HA +
Sbjct: 503 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACS-----------HAGFVNE 551
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G +Y +K+ HQI P++ + ++ L++ G EA +
Sbjct: 552 GK-----------RYYDQIKN---EHQIA-----PEMSHYACMVDLLARAGLFSEAQEFI 592
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ V+P+A S+LSAC + +L + + A L +++ NN
Sbjct: 593 RRMPVEPDAIAWGSLLSACRVHKNAELAE-LAAEKLLSIDPNN 634
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N ++ Q+ A+ L+++ML+ S + + +T T L AC+ + G ++HA+++
Sbjct: 159 NAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYIL 218
Query: 94 KYGHLHDIFIQNSL---------------------------------LHFYVTVKDIFSA 120
+ ++ + N+L L YV + D+ SA
Sbjct: 219 RTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 278
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACS 175
++F + DVV WT +I G + G + EAID+F CG + PN+ TL +VLS C+
Sbjct: 279 REMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE--PNSYTLAAVLSVCA 336
Query: 176 SLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
SL GK IH ++R+L E + + NA++
Sbjct: 337 SLACLDYGKQIHCRAIRSLLEQSSSVSNAII 367
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 35/176 (19%)
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF- 124
+T T L +C++ A G ++H+ V+K G + + NS+L+ Y D +A +F
Sbjct: 58 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 117
Query: 125 ----------NSVV------------------FPD--VVTWTTIISGLSKCGFHKEAIDM 154
N++V PD +V+W +I+G ++ G +A+ +
Sbjct: 118 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 177
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
F + + P+ T+ SVLSAC++LG+ ++GK +HA+ LR N + NA++
Sbjct: 178 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALI 233
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102
Q+ AI L+ M+ C N YT L C+ G +IH I+
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 361
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAIDMFCGI--- 158
+ N+++ Y A ++F+ V + + +TWT++I L++ G +EA+ +F +
Sbjct: 362 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 421
Query: 159 DVKPNANTLVSVLSACSSLGSRKLGK 184
V+P+ T V VLSACS G GK
Sbjct: 422 GVEPDRITYVGVLSACSHAGFVNEGK 447
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSS 176
A +F + D V+WT ++ GL++ G EAI + P TL +VLS+C+
Sbjct: 11 ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 70
Query: 177 LGSRKLGKAIHAHSLR 192
+ +G+ +H+ ++
Sbjct: 71 TQAGAVGRKVHSFVVK 86
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 31/163 (19%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
+++ L Q + A+ L+ +ML + T+ L ACS HA +
Sbjct: 397 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACS-----------HAGFVNE 445
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G +Y +K+ HQI P++ + ++ L++ G EA +
Sbjct: 446 GK-----------RYYDQIKN---EHQIA-----PEMSHYACMVDLLARAGLFSEAQEFI 486
Query: 156 CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ V+P+A S+LSAC + +L + + A L +++ NN
Sbjct: 487 RRMPVEPDAIAWGSLLSACRVHKNAELAE-LAAEKLLSIDPNN 528
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,108,083,456
Number of Sequences: 23463169
Number of extensions: 118590043
Number of successful extensions: 405423
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4911
Number of HSP's successfully gapped in prelim test: 2376
Number of HSP's that attempted gapping in prelim test: 353818
Number of HSP's gapped (non-prelim): 35197
length of query: 209
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 73
effective length of database: 9,168,204,383
effective search space: 669278919959
effective search space used: 669278919959
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 73 (32.7 bits)