BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045511
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PDZ|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase
 pdb|1PDY|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase
          Length = 434

 Score = 30.8 bits (68), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 11/92 (11%)

Query: 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPN-----ANTLVS 169
           K +F+A +  N V+ P+++      SGL K    KE  +  C +D   N     AN ++ 
Sbjct: 60  KSVFNAVKNVNDVIVPEIIK-----SGL-KVTQQKECDEFMCKLDGTENKSSLGANAILG 113

Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
           V  A    G+ +LG  ++ H     N + +IL
Sbjct: 114 VSLAICKAGAAELGIPLYRHIANLANYDEVIL 145


>pdb|1TMF|3 Chain 3, Three-Dimensional Structure Of Theiler Murine
          Encephalomyelitis Virus (Bean Strain)
          Length = 232

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
          S+ P   +P+Y K ++ PS Y    F+  L+ C L
Sbjct: 16 STNPDTTVPIYGKTISTPSDYMCGEFSDLLELCKL 50


>pdb|1TME|3 Chain 3, Three-Dimensional Structure Of Theiler Virus
          Length = 236

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
          S+ P   +P+Y K ++ P+ Y    F+  L+ C L
Sbjct: 16 STNPDTTVPIYGKTISTPNDYMCGEFSDLLELCKL 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,143,158
Number of Sequences: 62578
Number of extensions: 231020
Number of successful extensions: 611
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 5
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)