BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045511
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 116 bits (291), Expect = 9e-26, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 109/179 (60%), Gaps = 4/179 (2%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+L++ S AI L+ +M+N S + YTF L AC+ + A G++IH +
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G+ D+F+QNSL+HFY ++ SA ++F+ + +VV+WT++I G ++ F K+A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 153 DMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
D+F + +V PN+ T+V V+SAC+ L + G+ ++A + E N ++ +A++D
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 35/195 (17%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH---------L 98
+ A+ ++N M++ + + A+ +CS G H +V++ G L
Sbjct: 319 REALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNAL 378
Query: 99 HDIFIQ----------------------NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWT 136
D++++ NS++ YV ++ +A + F ++ ++V+W
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWN 438
Query: 137 TIISGLSKCGFHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLR 192
TIISGL + +EAI++FC + + N T++S+ SAC LG+ L K I+ + +
Sbjct: 439 TIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEK 498
Query: 193 NLNENNIILDNAVLD 207
N + ++ L ++D
Sbjct: 499 NGIQLDVRLGTTLVD 513
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQK 84
+P+ +I+ NT++ L Q S + AI ++ M + + + T AC A
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
I+ ++ K G D+ + +L+ + D SA IFNS+ DV WT I ++
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
G + AI++F + +KP+ V L+ACS G + GK I L+
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLK 599
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 48 QNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQN 105
++A+ L+ +M+ + + N T + AC+ + G +++A + G ++D+ + +
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV-S 275
Query: 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKP 162
+L+ Y+ I A ++F+ ++ + S + G +EA+ +F V+P
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335
Query: 163 NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ +++S +S+CS L + GK+ H + LRN E+ + NA++D
Sbjct: 336 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 380
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 30/136 (22%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L++ M+ + F AL ACS Q+G EI ++K LH
Sbjct: 553 ERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLK---LHG------- 602
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL 167
V P+ V + ++ L + G +EA+ + + ++PN
Sbjct: 603 --------------------VSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642
Query: 168 VSVLSACSSLGSRKLG 183
S+L+AC G+ ++
Sbjct: 643 NSLLAACRVQGNVEMA 658
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 94/173 (54%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLL P+ I Y ++ S + +TF KAC ++G +IH V K
Sbjct: 75 NTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTK 134
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G DI++QNSL+HFY + +A ++F + DVV+WT II+G ++ G +KEA+D
Sbjct: 135 MGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDT 194
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F +DV+PN T V VL + +G LGK IH L+ + ++ NA++D
Sbjct: 195 FSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALID 247
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
T++ + A+ ++KM P N T+ L + G IH ++K L
Sbjct: 182 FTRTGLYKEALDTFSKMDVEP---NLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLIS 238
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
+ N+L+ YV + + A ++F + D V+W ++ISGL C KEAID+F +
Sbjct: 239 LETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQT 298
Query: 160 ---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+KP+ + L SVLSAC+SLG+ G+ +H + L + + + A++D
Sbjct: 299 SSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVD 349
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93
N+++ L + AI L++ M + + T L AC+ A G +H +++
Sbjct: 274 NSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYIL 333
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G D I +++ Y I +A +IFN + +V TW ++ GL+ G E++
Sbjct: 334 TAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLR 393
Query: 154 MF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
F + KPN T ++ L+AC G G+ + H +++ N
Sbjct: 394 YFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRR-YFHKMKSREYN 439
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ-KGLEIHA 90
HI ++ + + + A+ ++N + S N +T+ L ++ H H + L
Sbjct: 342 HIGTAIVDMYAKCGYIETALEIFNGI----RSKNVFTWNALLGGLAI-HGHGLESLRYFE 396
Query: 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV------VFPDVVTWTTIISGLSK 144
++K G ++ + L+ + + F+ + +FP + + +I L +
Sbjct: 397 EMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCR 456
Query: 145 CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGS 179
G EA+++ + VKP+ ++LSAC + G+
Sbjct: 457 AGLLDEALELVKAMPVKPDVRICGAILSACKNRGT 491
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 36/213 (16%)
Query: 31 PHILNTLLKLLTQSSTPQNAIPLYNKML-NCPS-SYNHYTFTQALKACSLAHAHQKGLEI 88
P + NT+++ ++SS P+ AI ++ ML + PS T+ KA + G ++
Sbjct: 89 PFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQL 148
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF- 147
H VIK G D FI+N++LH YVT + A +IF ++ DVV W ++I G +KCG
Sbjct: 149 HGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLI 208
Query: 148 ------------------------------HKEAIDMFCGI---DVKPNANTLVSVLSAC 174
K+A+DMF + DVKP+ T+VS+L+AC
Sbjct: 209 DQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNAC 268
Query: 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ LG+ + G+ IH + +RN E N I+ A++D
Sbjct: 269 AYLGASEQGRWIHEYIVRNRFELNSIVVTALID 301
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 18 LNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75
++Q ++PQ + + N+++ ++ ++A+ ++ +M + +T L A
Sbjct: 208 IDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNA 267
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C+ A ++G IH ++++ + + +L+ Y I +F + W
Sbjct: 268 CAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCW 327
Query: 136 TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGS 179
++I GL+ GF + A+D+F ++ ++P++ + + VL+AC+ G
Sbjct: 328 NSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGE 374
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFY-VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IHA +IK G + D + +L F + D+ A+ +F + + W TII G S+
Sbjct: 43 QIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRS 102
Query: 146 GFHKEA----IDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
F + A IDM C VKP T SV A LG + G+ +H ++ E++
Sbjct: 103 SFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSF 162
Query: 201 LDNAVL 206
+ N +L
Sbjct: 163 IRNTML 168
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 42/222 (18%)
Query: 22 HAQII----KIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
+AQI+ P + N +++ + S P+ ++ LY +ML + +N YTF LKACS
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD------ 131
A ++ +IHA + K G+ +D++ NSL++ Y + AH +F+ + PD
Sbjct: 127 NLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNS 186
Query: 132 -------------------------VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 163
++WTT+ISG + +KEA+ +F + DV+P+
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPD 246
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
+L + LSAC+ LG+ + GK IH++ LN+ I +D+ +
Sbjct: 247 NVSLANALSACAQLGALEQGKWIHSY----LNKTRIRMDSVL 284
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ + A+ L+++M N ++ + AL AC+ A ++G IH+++ K
Sbjct: 217 TMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKT 276
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
D + L+ Y ++ A ++F ++ V WT +ISG + G +EAI F
Sbjct: 277 RIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKF 336
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
+ +KPN T +VL+ACS G + GK I R+ N
Sbjct: 337 MEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Query: 57 MLNCPSSYNH--YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV-- 112
+++C S H Y L+ CS ++ +IHA ++K G + D + L F +
Sbjct: 3 VISCSFSLEHNLYETMSCLQRCS---KQEELKQIHARMLKTGLMQDSYAITKFLSFCISS 59
Query: 113 TVKDIFSAHQI-FNSVVFPDVVTWTTIISGLSKCGFHKEAI-----DMFCGIDVKPNANT 166
T D QI F+ PD W +I G S C E M C NA T
Sbjct: 60 TSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS-CSDEPERSLLLYQRMLCS-SAPHNAYT 117
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
S+L ACS+L + + IHA + EN++ N++++
Sbjct: 118 FPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLIN 158
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 101/186 (54%), Gaps = 3/186 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+ +P + N+++K ++ P + + Y +ML+ S ++YTFT +K+C+ A + G
Sbjct: 67 VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIG 126
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+H H + G D ++Q +L+ FY D+ A Q+F+ + +V W +++SG +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQN 186
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
G EAI +F + +P++ T VS+LSAC+ G+ LG +H + + + N+ L
Sbjct: 187 GLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLG 246
Query: 203 NAVLDF 208
A+++
Sbjct: 247 TALINL 252
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 10/169 (5%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ I+ N+L+ Q+ AI ++ +M + TF L AC+ A
Sbjct: 167 RMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSL 226
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++I G ++ + +L++ Y D+ A ++F+ + +V WT +IS
Sbjct: 227 GSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGT 286
Query: 145 CGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187
G+ ++A+++F CG PN T V+VLSAC+ G + G++++
Sbjct: 287 HGYGQQAVELFNKMEDDCG--PIPNNVTFVAVLSACAHAGLVEEGRSVY 333
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
++HAH+I G+ + L+ + + I H +F SV PD + ++I SK
Sbjct: 27 QVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLR 86
Query: 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
+ + + +V P+ T SV+ +C+ L + ++GK +H H++
Sbjct: 87 LPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV 134
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 113/197 (57%), Gaps = 12/197 (6%)
Query: 18 LNQIHAQIIKIPQP---HILNTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQAL 73
++ H KI +P I NTL++ + +A LY +M ++ + +T+ +
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA + + G IH+ VI+ G I++QNSLLH Y D+ SA+++F+ + D+V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
W ++I+G ++ G +EA+ ++ ++ +KP+ T+VS+LSAC+ +G+ LGK +H +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248
Query: 191 L-----RNLNENNIILD 202
+ RNL+ +N++LD
Sbjct: 249 IKVGLTRNLHSSNVLLD 265
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
K+P+ ++ N+++ ++ P+ A+ LY +M + + +T L AC+ A
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +H ++IK G ++ N LL Y + A +F+ +V + V+WT++I GL+
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 145 CGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLG 183
GF KEAI++F ++ + P T V +L ACS G K G
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 87 EIHAHVIKYG-HLHDIFIQNSLLHFYVTVKD---IFSAHQIFNSVVFP-DVVTWTTIISG 141
+IHA I++G + D + L+ + V++ + AH++F+ + P +V W T+I G
Sbjct: 35 QIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRG 94
Query: 142 LSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
++ G A ++ + V +P+ +T ++ A +++ +LG+ IH+ +R+ +
Sbjct: 95 YAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGS 154
Query: 198 NIILDNAVL 206
I + N++L
Sbjct: 155 LIYVQNSLL 163
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 34/219 (15%)
Query: 24 QIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ I+ P I NT+ + SS P +A+ LY M++ N YTF LK+C+ + A +
Sbjct: 92 KTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFK 151
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN------------------ 125
+G +IH HV+K G D+++ SL+ YV + AH++F+
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 126 -------------SVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 169
+ DVV+W +ISG ++ G +KEA+++F + +V+P+ +T+V+
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 170 VLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
V+SAC+ GS +LG+ +H + +N+ + NA++D
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 310
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ ++ + A+ L+ M+ + T + AC+ + + + G ++H +
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G ++ I N+L+ Y ++ +A +F + + DV++W T+I G + +KEA+ +
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
F + PN T++S+L AC+ LG+ +G+ IH + + L
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P ++ NTL+ T + + A+ L+ +ML + N T L AC+ A
Sbjct: 326 RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385
Query: 85 GLEIHAHVIKY--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G IH ++ K G + ++ SL+ Y DI +AHQ+FNS++ + +W +I G
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445
Query: 143 SKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+ G + D+F I ++P+ T V +LSACS G LG+ I
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 99.4 bits (246), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 7/172 (4%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P+P I N +++ ++++ Q+A+ +Y+ M S + +TF LKACS Q G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLS 143
+HA V + G D+F+QN L+ Y + + SA +F + P+ +V+WT I+S +
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 144 KCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+ G EA+++F +DVKP+ LVSVL+A + L K G++IHA ++
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
Query: 26 IKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83
+ +P+ I++ ++ Q+ P A+ ++++M + L A + +
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLK 239
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G IHA V+K G + + SL Y + +A +F+ + P+++ W +ISG +
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
K G+ +EAIDMF + DV+P+ ++ S +SAC+ +GS + ++++ + R+ +++
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359
Query: 201 LDNAVLD 207
+ +A++D
Sbjct: 360 ISSALID 366
Score = 64.3 bits (155), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K P + N ++ ++ + AI ++++M+N + + T A+ AC+ + ++
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++ +V + + D+FI ++L+ + + A +F+ + DVV W+ +I G
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 146 GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
G +EAI ++ ++ V PN T + +L AC+ G + G
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA ++ G F+ L+H + DI A Q+F+ + P + W II G S+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 147 FHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
++A+ M+ + V P++ T +L ACS L ++G+ +HA R + ++ + N
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158
Query: 204 AVL 206
++
Sbjct: 159 GLI 161
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 102/187 (54%), Gaps = 4/187 (2%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I P NT+++ + + A+ YN+M+ + +++T+ LKAC+ + ++G
Sbjct: 92 IDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREG 151
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+IH V K G D+F+QNSL++ Y ++ + +F + +W++++S +
Sbjct: 152 KQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGM 211
Query: 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G E + +F G+ ++K + +VS L AC++ G+ LG +IH LRN++E NII+
Sbjct: 212 GMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIV 271
Query: 202 DNAVLDF 208
+++D
Sbjct: 272 QTSLVDM 278
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
AL AC+ A G+ IH +++ +I +Q SL+ YV + A IF + +
Sbjct: 240 ALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRN 299
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+T++ +ISGL+ G + A+ MF + ++P+ VSVL+ACS G K G+ + A
Sbjct: 300 NLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFA 359
Query: 189 HSLRN 193
L+
Sbjct: 360 EMLKE 364
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
++A+ +++KM+ +H + L ACS + ++G + A ++K G
Sbjct: 317 ESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGK---------- 366
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL 167
V P + ++ L + G +EA++ I ++ N
Sbjct: 367 --------------------VEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIW 406
Query: 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
+ LS C + +LG+ I A L L+ +N
Sbjct: 407 RTFLSQCRVRQNIELGQ-IAAQELLKLSSHN 436
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 97.8 bits (242), Expect = 5e-20, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 50 AIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ LY++ML + YTF L+ C +G E+H HV++YG+ DI + N+L+
Sbjct: 179 AMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALI 238
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNAN 165
YV D+ SA +F+ + D+++W +ISG + G E +++F G+ V P+
Sbjct: 239 TMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLM 298
Query: 166 TLVSVLSACSSLGSRKLGKAIHAH 189
TL SV+SAC LG R+LG+ IHA+
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAY 322
Score = 80.1 bits (196), Expect = 9e-15, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T T + AC L + G +IHA+VI G DI + NSL Y+ A ++F+ +
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM 358
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
D+V+WTT+ISG +AID + +D VKP+ T+ +VLSAC++LG G
Sbjct: 359 ERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV 418
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H +++ + +I+ N +++
Sbjct: 419 ELHKLAIKARLISYVIVANNLIN 441
Score = 64.3 bits (155), Expect = 6e-10, Method: Composition-based stats.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
P AI Y M + T L AC+ G+E+H IK + + + N+
Sbjct: 379 PDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN 438
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--CGIDVKPNA 164
L++ Y K I A IF+++ +V++WT+II+GL EA+ + ++PNA
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNA 498
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
TL + L+AC+ +G+ GK IHAH LR + L NA+LD
Sbjct: 499 ITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLD 541
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ L N M + + F ++ C A ++G ++++ + + + N+
Sbjct: 76 EEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAF 135
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
L +V ++ A +F + ++ +W ++ G +K G+ EA+ ++ + VKP+
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T VL C + GK +H H +R E +I + NA++
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALI 238
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G EIHAHV++ G D F+ N+LL YV + +A FNS DV +W +++G S+
Sbjct: 517 GKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSE 575
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175
G +++F + V+P+ T +S+L CS
Sbjct: 576 RGQGSMVVELFDRMVKSRVRPDEITFISLLCGCS 609
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 97.8 bits (242), Expect = 5e-20, Method: Composition-based stats.
Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 5/199 (2%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
L F +++ ++P ++++ T++ L Q+ A+ L+ ML C FT
Sbjct: 170 LQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFT 229
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ AC+ A A G+++H +IK G L++ ++ SL+ FY K I + ++F+ V
Sbjct: 230 CVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHE 289
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
V WT ++SG S H++A+ +F G+ + PN +T S L++CS+LG+ GK +H
Sbjct: 290 QVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMH 349
Query: 188 AHSLRNLNENNIILDNAVL 206
+++ E + + N+++
Sbjct: 350 GVAVKLGLETDAFVGNSLV 368
Score = 63.9 bits (154), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
++H Q+ + LL + + ++A+ +++ ML N TF L +CS
Sbjct: 286 KVHEQVA------VWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSAL 339
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G E+H +K G D F+ NSL+ Y ++ A +F + +V+W +II
Sbjct: 340 GTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSII 399
Query: 140 SGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
G ++ G K A +F ++ +P+ T +LSACS G + G+ + + +N
Sbjct: 400 VGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGIN 458
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVK 161
NS++H Y+ + A ++F + +V++WTT+I GL + EA+D+F + +K
Sbjct: 163 NSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIK 222
Query: 162 PNANTLVSVLSACSSLGSRKLGKAIHA 188
+ V++AC++ + +G +H
Sbjct: 223 STSRPFTCVITACANAPAFHMGIQVHG 249
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
Y + A +F+ + DVV+W ++ISG +CG A+ +F
Sbjct: 76 YTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLF 120
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ D+ NS++ V D+ +A ++F+ + VV+WT +++G + G +A +F
Sbjct: 94 VRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQ 153
Query: 158 IDVKPNA--NTLV 168
+ VK A N++V
Sbjct: 154 MPVKDTAAWNSMV 166
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 73 LKACSLAHA-HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131
+A S++H H K + +++ + ++ I N LL + I A ++FN V P
Sbjct: 12 FRAFSISHVIHGKCYRSFSVTVEFQN-REVLICNHLLS-----RRIDEAREVFNQVPSPH 65
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLG 178
V +T +I+G ++ +A+++F + V+ + + S++S C G
Sbjct: 66 VSLYTKMITGYTRSNRLVDALNLFDEMPVR-DVVSWNSMISGCVECG 111
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 35/232 (15%)
Query: 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF 69
KPT I +QI + P + N L++ + + P A Y +ML ++ TF
Sbjct: 62 KPTNLLGYAYGIFSQI-QNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITF 120
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
+KA S G + H+ ++++G +D++++NSL+H Y I +A +IF + F
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF 180
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF----------------------C---GID----- 159
DVV+WT++++G KCG + A +MF C ID
Sbjct: 181 RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM 240
Query: 160 ----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
V N +VSV+S+C+ LG+ + G+ + + +++ N+IL A++D
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVD 292
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N + +C+ A + G + +V+K ++ + +L
Sbjct: 231 EKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTAL 290
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNA 164
+ + DI A +F + D ++W++II GL+ G +A+ F + P
Sbjct: 291 VDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRD 350
Query: 165 NTLVSVLSACSSLGSRKLGKAIH 187
T +VLSACS G + G I+
Sbjct: 351 VTFTAVLSACSHGGLVEKGLEIY 373
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 30/140 (21%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
++++K L A+ +++M++ TFT L ACS +KGLEI+ ++ K
Sbjct: 319 SSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKK 378
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D I+ L H+ I+ L + G EA +
Sbjct: 379 -----DHGIEPRLEHY-------------------------GCIVDMLGRAGKLAEAENF 408
Query: 155 FCGIDVKPNANTLVSVLSAC 174
+ VKPNA L ++L AC
Sbjct: 409 ILKMHVKPNAPILGALLGAC 428
>sp|Q8VYH0|PP313_ARATH Pentatricopeptide repeat-containing protein At4g15720
OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1
Length = 616
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 10/206 (4%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTF 69
+ K++N ++ +P++++ +++ PQNA+ ++ KM + P N YTF
Sbjct: 75 VKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTF 134
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV- 128
KACS + G IHA + G +I + +SL+ Y D+ +A ++F+S++
Sbjct: 135 ASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIG 194
Query: 129 -FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSACSSLGSRKL 182
+VV+WT++I+ ++ EAI++F + + N L SV+SACSSLG +
Sbjct: 195 YGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQW 254
Query: 183 GKAIHAHSLRNLNENNIILDNAVLDF 208
GK H R E+N ++ ++LD
Sbjct: 255 GKVAHGLVTRGGYESNTVVATSLLDM 280
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +K G D F N L+ YV +K+I +A ++F+ + P+VV+WT++ISG + G
Sbjct: 51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110
Query: 148 HKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ A+ MF + V PN T SV ACS+L ++GK IHA + NI++ +
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSS 170
Query: 204 AVLDF 208
+++D
Sbjct: 171 SLVDM 175
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 36 TLLKLLTQSSTPQNAIPLY---NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+++ Q++ AI L+ N L + N + + ACS Q G H V
Sbjct: 204 SMITAYAQNARGHEAIELFRSFNAALTSDRA-NQFMLASVISACSSLGRLQWGKVAHGLV 262
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+ G+ + + SLL Y + A +IF + V+++T++I +K G + A+
Sbjct: 263 TRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAV 322
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLG 178
+F + + PN TL+ VL ACS G
Sbjct: 323 KLFDEMVAGRINPNYVTLLGVLHACSHSG 351
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 96.7 bits (239), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
Y + L ACS+ + G +IHAH+++YG D + N L+ YV + +AH++FN
Sbjct: 250 YILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNG 309
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLG 183
+ ++++WTT++SG + HKEA+++F + +KP+ S+L++C+SL + G
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFG 369
Query: 184 KAIHAHSLRNLNENNIILDNAVLD 207
+HA++++ N+ + N+++D
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLID 393
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGL--EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
S N Y + ++ACS + + ++ + ++K G D+++ L+ FY+ +I A
Sbjct: 143 SPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177
+F+++ VTWTT+ISG K G ++ +F + +V P+ L +VLSACS L
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSIL 262
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ GK IHAH LR E + L N ++D
Sbjct: 263 PFLEGGKQIHAHILRYGLEMDASLMNVLID 292
Score = 71.2 bits (173), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 28 IPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+P +I++ TLL Q++ + A+ L+ M + Y + L +C+ HA G
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFG 369
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HA+ IK +D ++ NSL+ Y + A ++F+ DVV + +I G S+
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRL 429
Query: 146 GFH---KEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199
G EA+++F + ++P+ T VS+L A +SL S L K IH + +I
Sbjct: 430 GTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDI 489
Query: 200 ILDNAVLD 207
+A++D
Sbjct: 490 FAGSALID 497
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
+K+ I N++ Q S + A+ L+ ++ + +TF + A + Q G
Sbjct: 515 MKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
E H ++K G + +I N+LL Y AH+ F+S DVV W ++IS +
Sbjct: 575 QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANH 634
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G K+A+ M + ++PN T V VLSACS G
Sbjct: 635 GEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAG 670
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF L+A + + +IH + KYG DIF ++L+ Y + + +F+ +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM 515
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGK 184
D+V W ++ +G + ++EA+++F + + +P+ T ++++A +L S +LG+
Sbjct: 516 KVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQ 575
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
H L+ E N + NA+LD
Sbjct: 576 EFHCQLLKRGLECNPYITNALLD 598
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 68/219 (31%)
Query: 13 LSFKQLNQ-IHAQIIKIP---QPHILNTLLKLLTQSSTPQNA------------------ 50
L+ QL Q H Q++K P+I N LL + + +P++A
Sbjct: 568 LASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSV 627
Query: 51 -------------IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ + KM++ N+ TF L ACS A + GL+ ++++G
Sbjct: 628 ISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFG- 686
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
+ P+ + ++S L + G +A ++
Sbjct: 687 ------------------------------IEPETEHYVCMVSLLGRAGRLNKARELIEK 716
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
+ KP A S+LS C+ G+ +L + HA + L++
Sbjct: 717 MPTKPAAIVWRSLLSGCAKAGNVELAE--HAAEMAILSD 753
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 105/183 (57%), Gaps = 3/183 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P I N++ + ++ + P L+ ++L ++YTF LKAC++A A ++G ++
Sbjct: 92 PDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQL 151
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
H +K G ++++ +L++ Y +D+ SA +F+ +V P VV + +I+G ++
Sbjct: 152 HCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRP 211
Query: 149 KEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
EA+ +F G +KPN TL+SVLS+C+ LGS LGK IH ++ ++ + ++ A+
Sbjct: 212 NEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTAL 271
Query: 206 LDF 208
+D
Sbjct: 272 IDM 274
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+I +P ++ N ++ + + P A+ L+ +M N T L +C+L +
Sbjct: 189 RIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDL 248
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH + K+ + + +L+ + + A IF + + D W+ +I +
Sbjct: 249 GKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYAN 308
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
G ++++ MF + +V+P+ T + +L+ACS G + G+
Sbjct: 309 HGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 93.6 bits (231), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTLLK L++ + + ++ M +++T ALKAC G IH V K
Sbjct: 29 NTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVKK 88
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
L D+++ +SL++ Y+ + A ++F+ + PD+VTW++++SG K G +A++
Sbjct: 89 DVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVE 148
Query: 154 MF----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F DV P+ TL++++SAC+ L + +LG+ +H +R N++ L N++L+
Sbjct: 149 FFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLN 206
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ Q+ A+ ++N M++ + N T L+AC+ AH ++G + H I+
Sbjct: 233 STVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIR 292
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + +L+ Y+ A+ +F+ + DVV+W +ISG + G +I+
Sbjct: 293 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEE 352
Query: 155 FCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + + +P+A +V VL +CS LG + K H++ ++
Sbjct: 353 FSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIK 394
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 94/187 (50%), Gaps = 6/187 (3%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQ 83
++ +P I+ ++++ ++ +P A+ + +M+ + + T + AC+ +
Sbjct: 121 ELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSR 180
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G +H VI+ G +D+ + NSLL+ Y + A +F + DV++W+T+I+
Sbjct: 181 LGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYV 240
Query: 144 KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200
+ G EA+ +F + +PN T++ VL AC++ + G+ H ++R E +
Sbjct: 241 QNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVK 300
Query: 201 LDNAVLD 207
+ A++D
Sbjct: 301 VSTALVD 307
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+ L +CS ++ H++VIKYG + FI SL+ Y + +A ++FN +
Sbjct: 371 KVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 430
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLG 178
D V WT++I+G G +A++ F + +VKPN T +S+LSACS G
Sbjct: 431 DTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAG 482
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A Q+F + + W T++ LS+ +E + F + + KP+ TL L AC
Sbjct: 13 ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72
Query: 177 LGSRKLGKAIHA 188
L G+ IH
Sbjct: 73 LREVNYGEMIHG 84
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q + A+ + M N Y+F L ACS + KG+++H+ + K
Sbjct: 121 NSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK 180
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
L D++I ++L+ Y ++ A ++F+ + +VV+W ++I+ + G EA+D+
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDV 240
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVLD 207
F + V+P+ TL SV+SAC+SL + K+G+ +H ++N N+IIL NA +D
Sbjct: 241 FQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 35 NTLLKLLTQSSTPQNAIPLY---NKMLNCPSSYNHYTFTQALKACS-LAHAHQKGLEIHA 90
N L+ TQ+ + A+ L+ + CP+ HY+F LKAC+ LA H G++ H
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPT---HYSFANILKACADLAELHL-GMQAHV 410
Query: 91 HVIKYG------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
HV+K+G DIF+ NSL+ YV + + +F ++ D V+W +I G ++
Sbjct: 411 HVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQ 470
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194
G+ EA+++F + KP+ T++ VLSAC G + G+ + R+
Sbjct: 471 NGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDF 523
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ Q+ A+ ++ ML + T + AC+ A + G E+H V+K
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS--------------------------V 127
L +DI + N+ + Y I A IF+S +
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341
Query: 128 VFP-----DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F +VV+W +I+G ++ G ++EA+ +FC + V P + ++L AC+ L
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401
Query: 180 RKLGKAIHAHSLR------NLNENNIILDNAVLD 207
LG H H L+ + E++I + N+++D
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 36/138 (26%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+HA VIK G ++IFIQN L+ Y + Q+F+ + ++ TW ++++GL+K GF
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 148 HKEAIDMFCGIDVKP----------------------------------NANTLVSVLSA 173
EA +F + + N + SVLSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 174 CSSLGSRKLGKAIHAHSL 191
CS L + K + HSL
Sbjct: 162 CSGLND--MNKGVQVHSL 177
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 30/152 (19%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ Q+ A+ L+ +ML +H T L AC HA ++
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACG-----------HAGFVE 510
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G H++ ++ F V P +T ++ L + GF +EA M
Sbjct: 511 EGR-----------HYFSSMTRDFG--------VAPLRDHYTCMVDLLGRAGFLEEAKSM 551
Query: 155 FCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
+ ++P++ S+L+AC + LGK +
Sbjct: 552 IEEMPMQPDSVIWGSLLAACKVHRNITLGKYV 583
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 91.7 bits (226), Expect = 3e-18, Method: Composition-based stats.
Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 6/200 (3%)
Query: 14 SFKQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFT 70
SF L +IP+P+ NTL++ P +I + M++ Y N YTF
Sbjct: 76 SFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFP 135
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
+KA + + G +H +K D+F+ NSL+H Y + D+ SA ++F ++
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
DVV+W ++I+G + G +A+++F + DVK + T+V VLSAC+ + + + G+ +
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 188 AHSLRNLNENNIILDNAVLD 207
++ N N+ L NA+LD
Sbjct: 256 SYIEENRVNVNLTLANAMLD 275
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQK 84
+PQ I+ N L+ Q+ P A+ +++++ L N T L AC+ A +
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G IH+++ K+G + + ++L+H Y D+ + ++FNSV DV W+ +I GL+
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
G EA+DMF + +VKPN T +V ACS G
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Score = 60.5 bits (145), Expect = 9e-09, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 35/190 (18%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-- 92
N+++ Q +P A+ L+ KM + +H T L AC+ + G ++ +++
Sbjct: 201 NSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEE 260
Query: 93 -----------------IKYGHLHDI------------FIQNSLLHFYVTVKDIFSAHQI 123
K G + D ++L Y +D +A ++
Sbjct: 261 NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREV 320
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN----TLVSVLSACSSLGS 179
NS+ D+V W +IS + G EA+ +F + ++ N TLVS LSAC+ +G+
Sbjct: 321 LNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGA 380
Query: 180 RKLGKAIHAH 189
+LG+ IH++
Sbjct: 381 LELGRWIHSY 390
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
AI ++ MLN N +T LKACS A + G ++H+ V+K D+F+ SL+
Sbjct: 268 AIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMD 327
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANT 166
Y +I ++F+ + + VTWT+II+ ++ GF +EAI +F + + N T
Sbjct: 328 MYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLT 387
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
+VS+L AC S+G+ LGK +HA ++N E N+ + + ++
Sbjct: 388 VVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLV 427
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N F L CS + G ++H +++K G + ++ +++SL++FY ++ SA + F
Sbjct: 183 NERMFVCLLNLCSRRAEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALRAF 241
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
+ + DV++WT +IS S+ G +AI MF G+ PN T+ S+L ACS + +
Sbjct: 242 DMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALR 301
Query: 182 LGKAIHAHSLRNLNENNIILDNAVLD 207
G+ +H+ ++ + + ++ + +++D
Sbjct: 302 FGRQVHSLVVKRMIKTDVFVGTSLMD 327
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+ M N+ T L+AC A G E+HA +IK +++I ++L
Sbjct: 367 EEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTL 426
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164
+ Y + A + + DVV+WT +ISG S G EA+D + V+PN
Sbjct: 427 VWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNP 486
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
T S L AC++ S +G++IH+ + +N +N+ + +A++
Sbjct: 487 FTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALI 528
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106
A+ +M+ N +T++ ALKAC+ + + G IH+ K L ++F+ ++
Sbjct: 467 ESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 526
Query: 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---N 163
L+H Y + A ++F+S+ ++V+W +I G ++ GF +EA+ + ++ + +
Sbjct: 527 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVD 586
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHS 190
++LS C G +L +A+ + +
Sbjct: 587 DYIFATILSTC---GDIELDEAVESSA 610
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
IHA +K I+ N+L+ V + D+ A ++F+S+ + VTWT +I G K G
Sbjct: 103 RIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYG 162
Query: 147 FHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
EA +F GI N V +L+ CS +LG+ +H + ++ + N+I+
Sbjct: 163 LEDEAFALFEDYVKHGIRF-TNERMFVCLLNLCSRRAEFELGRQVHGNMVK-VGVGNLIV 220
Query: 202 DNAVLDF 208
+++++ F
Sbjct: 221 ESSLVYF 227
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 22 HAQII-----KIPQPHILNTLLKLLTQSSTPQNAIPLYNKML-NCPSSYNHYTFTQALKA 75
HAQ++ P N L++ + SS+P N+I YN+ML + S + +TF ALK+
Sbjct: 57 HAQLLFDHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKS 116
Query: 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTW 135
C + K LEIH VI+ G L D + SL+ Y + A ++F+ + D+V+W
Sbjct: 117 CERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSW 176
Query: 136 TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+I S G H +A+ M+ + V ++ TLV++LS+C+ + + +G +H +
Sbjct: 177 NVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACD 236
Query: 193 NLNENNIILDNAVLDF 208
E+ + + NA++D
Sbjct: 237 IRCESCVFVSNALIDM 252
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ + A+ +Y +M N + YT L +C+ A G+ +H
Sbjct: 177 NVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACD 236
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+F+ N+L+ Y + +A +FN + DV+TW ++I G G EAI
Sbjct: 237 IRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISF 296
Query: 155 F---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
F V+PNA T + +L CS G K G
Sbjct: 297 FRKMVASGVRPNAITFLGLLLGCSHQGLVKEG 328
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 3/182 (1%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88
P+ + NTL K ++ P ++ LY KM + + +T+ +KA S G +
Sbjct: 72 PRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFAL 131
Query: 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148
HAHV+KYG + L+ Y+ ++ SA +F S+ D+V W ++ + G
Sbjct: 132 HAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNS 191
Query: 149 KEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205
A++ F C V+ ++ T+VS+LSAC LGS ++G+ I+ + + + NII++NA
Sbjct: 192 AIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENAR 251
Query: 206 LD 207
LD
Sbjct: 252 LD 253
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L + Q+ A+ +NKM ++ +T L AC + + G EI+ K
Sbjct: 179 NAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARK 238
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+I ++N+ L ++ + +A +F + +VV+W+T+I G + G +EA+ +
Sbjct: 239 EEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTL 298
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGK 184
F + ++PN T + VLSACS G GK
Sbjct: 299 FTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGK 331
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+IHA V++ G + LL V + D+ A Q+F+ + P + W T+ G +
Sbjct: 29 KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88
Query: 147 FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
E++ ++ + V+P+ T V+ A S LG G A+HAH ++
Sbjct: 89 LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVK 137
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 90.5 bits (223), Expect = 7e-18, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 7/180 (3%)
Query: 35 NTLLKLLTQS-STPQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
NTL++ S + A LY KML SS + +TF LKAC+ +G ++H +
Sbjct: 118 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQI 177
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K+G D+++ N L+H Y + + A ++F+ + +V+W ++I L + G + A+
Sbjct: 178 VKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSAL 237
Query: 153 DMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN---NIILDNAVLD 207
+F + +P+ T+ SVLSAC+ LGS LG HA LR + + ++++ N++++
Sbjct: 238 QLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 297
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ L + +A+ L+ +M + YT L AC+ + G HA +++
Sbjct: 221 NSMIDALVRFGEYDSALQLFREMQRSFEP-DGYTMQSVLSACAGLGSLSLGTWAHAFLLR 279
Query: 95 YGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+ D+ ++NSL+ Y + A Q+F + D+ +W +I G + G +EA
Sbjct: 280 KCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 339
Query: 152 IDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGK 184
++ F + +V+PN+ T V +L AC+ G G+
Sbjct: 340 MNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 377
Score = 33.5 bits (75), Expect = 0.99, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158
H F+ +F + V+D + P + + I+ +++ G+ EAIDM +
Sbjct: 369 HRGFVNKGRQYFDMMVRDY---------CIEPALEHYGCIVDLIARAGYITEAIDMVMSM 419
Query: 159 DVKPNANTLVSVLSACSSLGS 179
+KP+A S+L AC G+
Sbjct: 420 PMKPDAVIWRSLLDACCKKGA 440
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 87 EIHAHVIKYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
++HA ++ + + +F+ +L + D+ A ++F+S+ W T+I +
Sbjct: 66 QLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACA 125
Query: 144 KCGFHKEAI-----DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
KE M + P+ +T VL AC+ + GK +H +++ +
Sbjct: 126 HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGD 185
Query: 199 IILDNAVL 206
+ ++N ++
Sbjct: 186 VYVNNGLI 193
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 90.1 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100
L+++ AI L+ M Y F+ L AC + + G ++H V+K G D
Sbjct: 263 LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 322
Query: 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID- 159
++ N+L+ Y + ++ SA IF+++ D VT+ T+I+GLS+CG+ ++A+++F +
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 382
Query: 160 --VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
++P++NTL S++ ACS+ G+ G+ +HA++ + +N ++ A+L+
Sbjct: 383 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433
Score = 80.9 bits (198), Expect = 5e-15, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L+ QS + A+ ++ +M N++TF A+KA S ++G ++HA + K
Sbjct: 661 NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 720
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G+ + + N+L+ Y I A + F V + V+W II+ SK GF EA+D
Sbjct: 721 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDS 780
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + +V+PN TLV VLSACS +G
Sbjct: 781 FDQMIHSNVRPNHVTLVGVLSACSHIG 807
Score = 64.3 bits (155), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ TQ + A+ + +ML+ + T A+ AC+ A ++G +IHA
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G D+ QN+L+ Y I ++ F D + W ++SG + G ++EA+ +F
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 156 CGID---VKPNANTLVSVLSACSSLGSRKLGKAIHA 188
++ + N T S + A S + K GK +HA
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHA 716
Score = 64.3 bits (155), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE-IHAHVI 93
N ++K L + L+ +M++ + N TF+ L+AC +E IHA ++
Sbjct: 155 NKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIL 214
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G + N L+ Y + A ++F+ + D +W +ISGLSK EAI
Sbjct: 215 YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIR 274
Query: 154 MFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+FC + + P SVLSAC + S ++G+ +H L+
Sbjct: 275 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N YT+ LK C + G +IH+ +IK + ++ + L+ Y + + +A I
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK 181
DVV+WTT+I+G ++ F +A+ F + ++ + L + +SAC+ L + K
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Query: 182 LGKAIHAHSLRNLNENNIILDNAVL 206
G+ IHA + + +++ NA++
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALV 633
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NTL+ L+Q + A+ L+ +M + T + ACS +G ++HA+ K
Sbjct: 358 NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK 417
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + I+ +LL+ Y DI +A F +VV W ++ + + +
Sbjct: 418 LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 477
Query: 155 FCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ PN T S+L C LG +LG+ IH+ ++ + N + + ++D
Sbjct: 478 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 65 NHYTFTQALKACSLAHAH-QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123
NH T L+ C + +G ++H+ ++K G + + L FY+ D++ A ++
Sbjct: 83 NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKV 142
Query: 124 FNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSR 180
F+ + + TW +I L+ E +F + +V PN T VL AC GS
Sbjct: 143 FDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG-GSV 201
Query: 181 KLG--KAIHAHSLRNLNENNIILDNAVLDF 208
+ IHA L ++ ++ N ++D
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDL 231
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY 67
SL L+F + +H+ P N L + + S +P +I +Y++M N
Sbjct: 58 SLAKDLAFARTLLLHSSD---STPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKL 114
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
TF LKAC+ G +I V+K+G D+++ N+L+H Y T K A ++F+ +
Sbjct: 115 TFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEM 174
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLGSRKLGK 184
+VV+W +I++ L + G + FC G P+ T+V +LSAC G+ LGK
Sbjct: 175 TERNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGK 232
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H+ + E N L A++D
Sbjct: 233 LVHSQVMVRELELNCRLGTALVD 255
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---- 158
+ +L+ Y + A +F +V +V TW+ +I GL++ GF +EA+ +F +
Sbjct: 249 LGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKES 308
Query: 159 DVKPNANTLVSVLSACSSLG 178
V+PN T + VL ACS G
Sbjct: 309 SVRPNYVTFLGVLCACSHTG 328
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 41 LTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACS----------LAHAHQKGLEIH 89
L Q + A+ L++KM+ S N+ TF L ACS H +K +I
Sbjct: 288 LAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIK 347
Query: 90 AHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFH 148
+I YG + DI + L+ A+ + F PD V W T+ LS C H
Sbjct: 348 PMMIHYGAMVDILGRAGRLN---------EAYDFIKKMPFEPDAVVWRTL---LSACSIH 395
Query: 149 KEAIDMFCGIDVKPN 163
+ D G VK
Sbjct: 396 HDEDDEGIGEKVKKR 410
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 89.7 bits (221), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Query: 9 LKPTLSFKQLNQIHAQI--IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH 66
LK TL F+Q + + P + N+L+ + + L+ + +
Sbjct: 52 LKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHG 111
Query: 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126
+TF LKAC+ A + + G+++H+ V+K G HD+ SLL Y + AH++F+
Sbjct: 112 FTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDE 171
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLG 183
+ VVTWT + SG + G H+EAID+F + VKP++ +V VLSAC +G G
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231
Query: 184 KAI 186
+ I
Sbjct: 232 EWI 234
Score = 82.4 bits (202), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 17 QLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74
+LN H +IP ++ L T S + AI L+ KM+ + Y Q L
Sbjct: 161 RLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLS 220
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDI----FIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
AC H L+ ++KY ++ F++ +L++ Y + A +F+S+V
Sbjct: 221 AC----VHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEK 276
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIH 187
D+VTW+T+I G + F KE I++F + ++KP+ ++V LS+C+SLG+ LG+
Sbjct: 277 DIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGI 336
Query: 188 AHSLRNLNENNIILDNAVLD 207
+ R+ N+ + NA++D
Sbjct: 337 SLIDRHEFLTNLFMANALID 356
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT 134
AC++ H Q IH +I + HD F+ N LL + + ++ +F+ FP++
Sbjct: 23 ACTVNHLKQ----IHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFL 78
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ ++I+G E +D+F I + + T VL AC+ SRKLG +H+
Sbjct: 79 YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS 135
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T+++ +S P+ I L+ +ML + ++ L +C+ A G + + +
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ L ++F+ N+L+ Y + ++F + D+V ISGL+K G K + +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 155 FCGID---VKPNANTLVSVLSACSSLG 178
F + + P+ +T + +L C G
Sbjct: 402 FGQTEKLGISPDGSTFLGLLCGCVHAG 428
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ ++ +M++ N +T + A+KACS + G H VI +G + FI ++L +
Sbjct: 147 ALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAY 206
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC----GIDVKPNAN 165
Y ++ A ++F+ + PDV+ WT ++S SK ++EA+ +F G + P+ +
Sbjct: 207 LYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGS 266
Query: 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
T +VL+AC +L K GK IH + N +N+++++++LD
Sbjct: 267 TFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDM 309
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQ 83
++P+P ++ +L +++ + A+ L+ M + TF L AC +
Sbjct: 223 EMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLK 282
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
+G EIH +I G ++ +++SLL Y + A Q+FN + + V+W+ ++ G
Sbjct: 283 QGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYC 342
Query: 144 KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDN 203
+ G H++AI++F ++ K + +VL AC+ L + +LGK IH +R N+I+++
Sbjct: 343 QNGEHEKAIEIFREMEEK-DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVES 401
Query: 204 AVLDF 208
A++D
Sbjct: 402 ALIDL 406
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+ LL Q+ + AI ++ +M + Y F LKAC+ A + G EIH ++
Sbjct: 335 SALLGGYCQNGEHEKAIEIFREM----EEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVR 390
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ ++++L+ Y I SA ++++ + +++TW ++S L++ G +EA+
Sbjct: 391 RGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSF 450
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + +KP+ + +++L+AC G G+
Sbjct: 451 FNDMVKKGIKPDYISFIAILTACGHTGMVDEGR 483
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 9 LKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT 68
L P++S + ++I+++ + L +++L +ST + IP K+
Sbjct: 18 LTPSISSSAPTK-QSRILELCKLGQLTEAIRIL--NSTHSSEIPATPKL----------- 63
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSV 127
+ L+ C+ + G++ HAHV+K G D + NSLL Y + + ++F+
Sbjct: 64 YASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLGSRKL 182
D ++WT+++SG H +A+++F G+D N TL S + ACS LG +L
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDA--NEFTLSSAVKACSELGEVRL 181
Query: 183 GKAIHA 188
G+ H
Sbjct: 182 GRCFHG 187
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN------CPSSYN-HYTFTQALKACSL 78
I+IP + +T++++ ++SS P + + M+ PS H+ LKAC
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFF 132
Query: 79 AHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ G +IH V+K G L D +Q +L YV K +F A ++F+ + PDVV W
Sbjct: 133 S----VGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDV 188
Query: 138 IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH-SLRN 193
+++G +CG E +++F + ++P+ ++ + L+AC+ +G+ GK IH +
Sbjct: 189 LMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKR 248
Query: 194 LNENNIILDNAVLD 207
E+++ + A++D
Sbjct: 249 WIESDVFVGTALVD 262
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 7/167 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IPQP ++ + L+ + + ++ +ML + ++ T AL AC+ A +
Sbjct: 177 EIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQ 236
Query: 85 GLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IH V K + D+F+ +L+ Y I +A ++F + +V +W +I G +
Sbjct: 237 GKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYA 296
Query: 144 KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAI 186
G+ K+A I+ +KP++ L+ VL+AC+ G + G+ +
Sbjct: 297 AYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTM 343
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 89.0 bits (219), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
H+LN LK ++ L+++M N +TF+ LKAC L +A +KGL+IH
Sbjct: 82 HVLNGDLK---------GSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 132
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
+K G + + NSL+ Y I A ++F +V +++W +I+G G+ +A
Sbjct: 133 CLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKA 192
Query: 152 IDMF-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+D F I +P+ TL S+L ACSS G GK IH +R+
Sbjct: 193 LDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 239
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L+ C+ +G ++H +++K G ++ N L+ Y ++ A+++F+S+ +V
Sbjct: 13 LRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNV 72
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+W+ ++SG G K ++ +F + + PN T + L AC L + + G IH
Sbjct: 73 VSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 132
Query: 190 SLRNLNENNIILDNAVLD 207
L+ E + + N+++D
Sbjct: 133 CLKIGFEMMVEVGNSLVD 150
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
A+ L+ ++ S + + + + + ++G ++ A +K + + NS++
Sbjct: 297 AMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVD 356
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y+ + A + F + DV++WT +I+G K G K+++ +F + +++P+
Sbjct: 357 MYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVC 416
Query: 167 LVSVLSACSSLGSRKLGKAIHAHSL 191
++VLSACS G K G+ + + L
Sbjct: 417 YLAVLSACSHSGMIKEGEELFSKLL 441
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAH 121
+ +T T LKACS G +IH +++ G H I SL+ YV +FSA
Sbjct: 209 DEFTLTSLLKACSSTGMIYAGKQIHGFLVRSG-FHCPSSATITGSLVDLYVKCGYLFSAR 267
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
+ F+ + +++W+++I G ++ G EA+ +F ++ + ++ L S++ +
Sbjct: 268 KAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFA 327
Query: 179 SRKLGKAIHAHSLR 192
+ GK + A +++
Sbjct: 328 LLRQGKQMQALAVK 341
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
P V + ++ L + G KEA + + +KPN ++LS C G +LGK +
Sbjct: 448 PRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKI 507
Query: 190 SLR 192
LR
Sbjct: 508 LLR 510
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 88.6 bits (218), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH----QKGLE 87
++ N L + LT + + + LY KM + +T+T LKAC + KG E
Sbjct: 144 YVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKE 203
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
IHAH+ + G+ ++I +L+ Y + A +F + +VV+W+ +I+ +K G
Sbjct: 204 IHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGK 263
Query: 148 HKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
EA+ F + D PN+ T+VSVL AC+SL + + GK IH + LR
Sbjct: 264 AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR 313
Score = 57.8 bits (138), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
SS N T L+AC+ A ++G IH ++++ G + + ++L+ Y +
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQ 340
Query: 122 QIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLG 178
++F+ + DVV+W ++IS G+ K+AI +F P T VSVL ACS G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400
Query: 179 SRKLGKAI 186
+ GK +
Sbjct: 401 LVEEGKRL 408
Score = 50.4 bits (119), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 11/180 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N L++ L + + AI ++L+ SS + T+ + C + L +H H++
Sbjct: 50 NQLIQSLCKEGKLKQAI----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G D F+ L+ Y + + A ++F+ + W + L+ G +E + +
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165
Query: 155 FCG---IDVKPNANTLVSVLSAC----SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+ I V+ + T VL AC ++ GK IHAH R +++ + ++D
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVD 225
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 47/223 (21%)
Query: 14 SFKQLNQIHAQII--------KIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN 65
S Q+ QIH ++ + + NTL++ + + ++ L+ ML N
Sbjct: 26 SSNQIKQIHTVLLTSNALVASRWKTKCVYNTLIRSYLTTGEYKTSLALFTHMLASHVQPN 85
Query: 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 125
+ TF +KA + + G+ +H +K G L D F+Q S + FY V D+ S+ ++F+
Sbjct: 86 NLTFPSLIKAACSSFSVSYGVALHGQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFD 145
Query: 126 SVVFP-------------------------------DVVTWTTIISGLSKCGFHKEAIDM 154
++ P DVV+WTT+I+G SK G H +A+ +
Sbjct: 146 DILNPCVVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMV 205
Query: 155 FCGI------DVKPNANTLVSVLSACSSL--GSRKLGKAIHAH 189
F + + PN T VSVLS+C++ G +LGK IH +
Sbjct: 206 FGEMIQNERAVITPNEATFVSVLSSCANFDQGGIRLGKQIHGY 248
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 65 NHYTFTQALKACSLAHAHQKGL----EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120
N TF L +C A+ Q G+ +IH +V+ + + +LL Y D+ A
Sbjct: 220 NEATFVSVLSSC--ANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMA 277
Query: 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 175
IF+ + V W IIS L+ G K+A++MF + V PN TL+++L+AC+
Sbjct: 278 LTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACA 335
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 88.2 bits (217), Expect = 4e-17, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 99/179 (55%), Gaps = 8/179 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++K T A+ Y++M+ + +T+ +K+ + + ++G +IHA VIK
Sbjct: 99 NVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIK 158
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + D+++ NSL+ Y+ + + A ++F + D+V+W ++ISG G ++ +
Sbjct: 159 LGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLML 218
Query: 155 F-----CGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
F CG KP+ + +S L ACS + S K+GK IH H++R+ + ++++ ++LD
Sbjct: 219 FKEMLKCGF--KPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILD 275
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ +A+ L+ ++ + + T L A + + + +G EIHA+++K
Sbjct: 400 NSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVK 459
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ + I NSL+H Y D+ A + FN ++ DVV+W +II + GF + ++ +
Sbjct: 460 SRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWL 519
Query: 155 FCGI---DVKPNANTLVSVLSACSSLG 178
F + V PN +T S+L+ACS G
Sbjct: 520 FSEMIASRVNPNKSTFASLLAACSISG 546
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSL 107
+++ L+ +ML C + ++ AL ACS ++ + G EIH H ++ D+ + S+
Sbjct: 214 SSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSI 273
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID----VKPN 163
L Y ++ A +IFN ++ ++V W +I ++ G +A F + ++P+
Sbjct: 274 LDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPD 333
Query: 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
T +++L A + L G+ IH +++R +++L+ A++D
Sbjct: 334 VITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALID 373
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
A A +G IH + ++ G L + ++ +L+ Y + SA IF+ + +V++W +I
Sbjct: 343 ASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSI 402
Query: 139 ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
I+ + G + A+++F + + P++ T+ S+L A + S G+ IHA+ +++
Sbjct: 403 IAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRY 462
Query: 196 ENNIILDNAVL 206
+N I+ N+++
Sbjct: 463 WSNTIILNSLV 473
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176
A Q+F+ + D W +I G + CG + EA+ + + VK + T V+ + +
Sbjct: 83 ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142
Query: 177 LGSRKLGKAIHAHSLR 192
+ S + GK IHA ++
Sbjct: 143 ISSLEEGKKIHAMVIK 158
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 87.8 bits (216), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 5/186 (2%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++P+ ++++ ++ +Q+ A+ ++ +M+ N +TF L +C A
Sbjct: 112 EMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGL 171
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++K+ + IF+ +SLL Y I A +IF + DVV+ T II+G ++
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +EA++MF + + PN T S+L+A S L GK H H LR +L
Sbjct: 232 LGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL 291
Query: 202 DNAVLD 207
N+++D
Sbjct: 292 QNSLID 297
Score = 77.0 bits (188), Expect = 8e-14, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 8/198 (4%)
Query: 15 FKQLNQIHAQIIKIPQPHILNTLLKL--LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72
F + IH P ++L T+L + L + Q A+ L ML ++ Y
Sbjct: 2 FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEAL-LEMAMLGPEMGFHGYD--AL 58
Query: 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 132
L AC A + G +HAH+IK +L +++ LL FY + A ++ + + +V
Sbjct: 59 LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118
Query: 133 VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189
V+WT +IS S+ G EA+ +F + D KPN T +VL++C LGK IH
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178
Query: 190 SLRNLNENNIILDNAVLD 207
++ +++I + +++LD
Sbjct: 179 IVKWNYDSHIFVGSSLLD 196
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ +++++ + S N+ T+ L A S G + H HV++ +QNSL
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN 163
+ Y ++ A ++F+++ ++W ++ G SK G +E +++F + VKP+
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Query: 164 ANTLVSVLSACS 175
A TL++VLS CS
Sbjct: 356 AVTLLAVLSGCS 367
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 34/217 (15%)
Query: 9 LKPTLSFKQLNQIHAQII--KIPQPHIL----------------------------NTLL 38
LK +S QL QI AQ++ + +P+ L N ++
Sbjct: 44 LKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMI 103
Query: 39 KLLTQSSTP-QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97
+ LT + + A+ LY +M + +T+ AC+ G +H+ + K G
Sbjct: 104 RGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGL 163
Query: 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157
D+ I +SL+ Y + A ++F+ + D V+W ++ISG S+ G+ K+A+D+F
Sbjct: 164 ERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRK 223
Query: 158 ID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
++ +P+ TLVS+L ACS LG + G+ + ++
Sbjct: 224 MEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 260
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +++ ++A+ L+ KM + T L ACS + G + I
Sbjct: 202 NSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAIT 261
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
F+ + L+ Y D+ SA ++FN ++ D V WT +I+ S+ G EA +
Sbjct: 262 KKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKL 321
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F ++ V P+A TL +VLSAC S+G+ +LGK I H+ ++NI + ++D
Sbjct: 322 FFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVD 377
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Query: 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78
++ Q+IK + ++ + +Q+ A L+ +M S + T + L AC
Sbjct: 288 RRVFNQMIKKDRV-AWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 346
Query: 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI 138
A + G +I H + H+I++ L+ Y + A ++F ++ + TW +
Sbjct: 347 VGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAM 406
Query: 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLG 178
I+ + G KEA+ +F + V P+ T + VLSAC G
Sbjct: 407 ITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAG 446
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 16/195 (8%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLN------CPSSYN-HYTFTQALKACSL 78
I+IP + +T++++ ++SS P + + M+ PS H+ LKAC
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFF 132
Query: 79 AHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTT 137
+ G +IH V+K G L D +Q +L YV K + A ++F+ + PDVV W
Sbjct: 133 S----VGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDV 188
Query: 138 IISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIHAH-SLRN 193
+++G +CG E +++F + VK P+ ++ + L+AC+ +G+ GK IH ++
Sbjct: 189 LMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKS 248
Query: 194 LNENNIILDNAVLDF 208
E+++ + A++D
Sbjct: 249 WIESDVFVGTALVDM 263
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 27 KIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IPQP ++ + L+ + + ++ +ML + ++ T AL AC+ A +
Sbjct: 177 EIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQ 236
Query: 85 GLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
G IH V K + D+F+ +L+ Y I +A ++F + +V +W +I G +
Sbjct: 237 GKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYA 296
Query: 144 KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLGSRKLGKAI 186
G+ K+A+ ++ +KP++ L+ VL+AC+ G + G+++
Sbjct: 297 AYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSM 343
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 68/242 (28%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
K ++ H+ + +I P+ N++++ SSTP+ A+ ++ +ML P + Y+FT L
Sbjct: 88 KTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVL 147
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY---------------VTVKDIF 118
KAC+ ++G +IH IK G + D+F++N+L++ Y + V+D
Sbjct: 148 KACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAV 207
Query: 119 S----------------AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV-- 160
S A +F+ + +V +W +ISG + G KEA ++F + V
Sbjct: 208 SWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRD 267
Query: 161 ---------------------------------KPNANTLVSVLSACSSLGSRKLGKAIH 187
KP+ TLVSVLSAC+SLGS G+ +H
Sbjct: 268 VVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVH 327
Query: 188 AH 189
+
Sbjct: 328 VY 329
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 51 IPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109
+ ++NKML+ + + +T L AC+ + +G +H ++ K+G + F+ +L+
Sbjct: 288 LEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVD 347
Query: 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 166
Y I A ++F + DV TW +IIS LS G K+A+++F + KPN T
Sbjct: 348 MYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGIT 407
Query: 167 LVSVLSACSSLG----SRKL 182
+ VLSAC+ +G +RKL
Sbjct: 408 FIGVLSACNHVGMLDQARKL 427
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 23 AQIIKIPQPHIL-----NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77
A+II PQ + L L K+ SSTP +P+ +FT+ +A S
Sbjct: 10 AEIIIRPQAYNLRLLQKENLKKMSVCSSTP---VPIL-------------SFTE--RAKS 51
Query: 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVVFPDVVT 134
L Q HA ++K G HD F + L+ F T K + AH I N + P+ T
Sbjct: 52 LTEIQQA----HAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFT 107
Query: 135 WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191
++I + + A+ +F + V P+ + VL AC++ + G+ IH +
Sbjct: 108 HNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFI 167
Query: 192 RNLNENNIILDNAVLD 207
++ ++ ++N +++
Sbjct: 168 KSGLVTDVFVENTLVN 183
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
++PQ + N+++ + ++ P + LY++M+ + TFT +KAC +K
Sbjct: 75 ELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEK 134
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G + + +G+ +D+F+ +S+L+ Y+ + A +F + DV+ WTT+++G ++
Sbjct: 135 GEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQ 194
Query: 145 CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
G +A++ + + + ++ +L A LG K+G+++H + R N+++
Sbjct: 195 AGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVV 254
Query: 202 DNAVLDF 208
+ +++D
Sbjct: 255 ETSLVDM 261
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ Q+ A+ Y +M N + L+A + G +H ++ +
Sbjct: 187 TMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRT 246
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK---EAI 152
G ++ ++ SL+ Y V I A ++F+ ++F V+W ++ISG ++ G EA+
Sbjct: 247 GLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAV 306
Query: 153 DMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+ +P+ TLV VL ACS +GS K G+ +H + L+
Sbjct: 307 VEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKR 347
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T L ACS + + G +H +++K H+ D +L+ Y + S+ +IF V
Sbjct: 320 TLVGVLVACSQVGSLKTGRLVHCYILKR-HVLDRVTATALMDMYSKCGALSSSREIFEHV 378
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
D+V W T+IS G +E + +F + +++P+ T S+LSA S G + G+
Sbjct: 379 GRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQ 438
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 86.7 bits (213), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ A+ ++KML N YTF+ L A + +GL+IH V+K ++D+ +QNSL
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV---KPNA 164
+ Y + A++IF+ + P++V++ T+ISG S GF K+A+ +F ++ +PN
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 165 NTLVSVLSACSSLGSRKLG 183
T +++LSAC +G LG
Sbjct: 540 VTFLALLSACVHVGYVDLG 558
Score = 57.4 bits (137), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DV 160
+S++H Y + I A +F+ + +V+TWT +I G K GF ++ +F + DV
Sbjct: 212 SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDV 271
Query: 161 KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206
K N+NTL + AC + G IH R E ++ L N+++
Sbjct: 272 KVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLM 317
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 95/207 (45%), Gaps = 14/207 (6%)
Query: 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPS 62
K+ + + +++ +QIH + ++P L N+L+ + ++ A ++ M N S
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
+ T ++ ++ A++ ++ D+ ++ + +I +
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGK--------DMVSWTDMIKGFSGKGEISKCVE 393
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGS 179
+F + D +TWT +IS G+++EA+ F + +V PN+ T SVLSA +SL
Sbjct: 394 LFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLAD 453
Query: 180 RKLGKAIHAHSLRNLNENNIILDNAVL 206
G IH ++ N++ + N+++
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLV 480
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T KAC +++G +IH V + D+F+ NSL+ Y + + A +F
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
+ D V+W ++I+GL + EA ++F
Sbjct: 334 GVMKNKDSVSWNSLITGLVQRKQISEAYELF 364
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 127 VVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL--GSRKLGK 184
V F D V ++SG + G EA+ +F G+ VK + +CSS+ G K+G+
Sbjct: 172 VKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKE--------VVSCSSMVHGYCKMGR 223
Query: 185 AIHAHSLRN-LNENNIILDNAVLD 207
+ A SL + + E N+I A++D
Sbjct: 224 IVDARSLFDRMTERNVITWTAMID 247
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 86.7 bits (213), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 7/189 (3%)
Query: 21 IHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
+ + I P+ + N L+ L++SS P+ I Y ++ + + ++F LKA S
Sbjct: 66 VFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVS 125
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
A +G+E+H K L D F++ + Y + I A +F+ + DVVTW T+I
Sbjct: 126 ALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIE 185
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197
+ G EA +F + +V P+ L +++SAC G+ + +AI+ L EN
Sbjct: 186 RYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEF----LIEN 241
Query: 198 NIILDNAVL 206
++ +D +L
Sbjct: 242 DVRMDTHLL 250
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95
T++ +S PQ A+ ++ +M + + + AC+ K +H+ +
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373
Query: 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155
G ++ I N+L++ Y + + +F + +VV+W+++I+ LS G +A+ +F
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433
Query: 156 CGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
+ +V+PN T V VL CS G + GK I A
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 469
Score = 57.4 bits (137), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129
T L A +A +++ + + ++F+ +++ Y + A IF+
Sbjct: 247 THLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEK 306
Query: 130 PDVVTWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186
D+V WTT+IS + + +EA+ +F C +KP+ ++ SV+SAC++LG K +
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366
Query: 187 HAHSLRNLNENNIILDNAVLD 207
H+ N E+ + ++NA+++
Sbjct: 367 HSCIHVNGLESELSINNALIN 387
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 99/191 (51%), Gaps = 6/191 (3%)
Query: 20 QIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79
Q+ + I + +I+N ++ +QS P AI L+ +ML + ++ L S+
Sbjct: 407 QVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLL---SVL 463
Query: 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139
G ++H + +K G + D+ + +SL Y + ++++F + F D W ++I
Sbjct: 464 DCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMI 523
Query: 140 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196
SG ++ G+ +EAI +F + P+ +TL +VL+ CSS S GK IH ++LR +
Sbjct: 524 SGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGID 583
Query: 197 NNIILDNAVLD 207
+ L +A+++
Sbjct: 584 KGMDLGSALVN 594
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 4/168 (2%)
Query: 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
S K Q++ ++ ++ P ++L+ +Q Q+ L+ M+ + + + + L
Sbjct: 601 SLKLARQVYDRLPEL-DPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSIL 659
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
KA +L+ G ++HA++ K G + + +SLL Y I + F+ + PD++
Sbjct: 660 KAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLI 719
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLG 178
WT +I+ ++ G EA+ ++ + KP+ T V VLSACS G
Sbjct: 720 AWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGG 767
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 6/186 (3%)
Query: 28 IPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
IPQP ++ N ++ Q + ++ ++KM N ++ + ACS A
Sbjct: 110 IPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFS 169
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
+ H IK G+ ++++L+ + A+++F + +V W TII+G +
Sbjct: 170 ELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRN 229
Query: 146 GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+ D+F + V KP++ T SVL+AC+SL + GK + A ++ ++ +
Sbjct: 230 QNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIK-CGAEDVFVC 288
Query: 203 NAVLDF 208
A++D
Sbjct: 289 TAIVDL 294
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112
L+++M + YT++ L AC+ + G + A VIK G D+F+ +++ Y
Sbjct: 238 LFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCG-AEDVFVCTAIVDLYA 296
Query: 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTL 167
+ A ++F+ + P VV+WT ++SG +K A+++F G+++ N T+
Sbjct: 297 KCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEI--NNCTV 354
Query: 168 VSVLSAC 174
SV+SAC
Sbjct: 355 TSVISAC 361
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ AI L+++ML+ +S + T L CS + +G EIH + ++ G + + ++L
Sbjct: 533 REAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSAL 592
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NA 164
++ Y + A Q+++ + D V+ +++ISG S+ G ++ +F + + ++
Sbjct: 593 VNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDS 652
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAH 189
+ S+L A + LG +HA+
Sbjct: 653 FAISSILKAAALSDESSLGAQVHAY 677
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Query: 27 KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP P +++ +L T+S+ +A+ ++ +M + N+ T T + AC +
Sbjct: 310 RIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCE 369
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF---NSVVFPDVVTWTTIISG 141
++HA V K G D + +L+ Y DI + Q+F + + ++V +I+
Sbjct: 370 ASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITS 427
Query: 142 LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
S+ +AI +F + + SV S S L LGK +H ++L++
Sbjct: 428 FSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKS 479
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 88 IHAHVIK-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+ AH+++ Y D+F+ SLL +Y + A ++F+++ PDVV+ +ISG +
Sbjct: 70 LQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHR 129
Query: 147 FHKEAIDMFCG---IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
+E++ F + + N + SV+SACS+L + + + H+++
Sbjct: 130 LFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIK 178
Score = 34.3 bits (77), Expect = 0.59, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 30/148 (20%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
L+ Q A+ +YN M + TF L ACS
Sbjct: 724 LIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACS------------------- 764
Query: 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156
H ++ S H VKD + P+ + ++ L + G +EA
Sbjct: 765 --HGGLVEESYFHLNSMVKDYG---------IEPENRHYVCMVDALGRSGRLREAESFIN 813
Query: 157 GIDVKPNANTLVSVLSACSSLGSRKLGK 184
+ +KP+A ++L+AC G +LGK
Sbjct: 814 NMHIKPDALVWGTLLAACKIHGEVELGK 841
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ N+++ Q+S A+ L+ +M T T L+AC+ + G++ H H+
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+KY D+ + N+L+ Y + A ++FN + DV+TW+T+ISGL++ G+ +EA+
Sbjct: 287 VKYDQ--DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344
Query: 153 DMFCGID---VKPNANTLVSVLSACSSLG 178
+F + KPN T+V VL ACS G
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAG 373
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/200 (25%), Positives = 100/200 (50%), Gaps = 10/200 (5%)
Query: 13 LSFKQLNQIHAQIIKIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70
+ F LN H ++PQ ++++ T++ ++ Q A+ L ML N YT++
Sbjct: 107 VKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYS 166
Query: 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 130
L++C+ +H +IK G D+F++++L+ + + + A +F+ +V
Sbjct: 167 SVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223
Query: 131 DVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRKLGKAIH 187
D + W +II G ++ A+++F + TL SVL AC+ L +LG H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283
Query: 188 AHSLRNLNENNIILDNAVLD 207
H ++ + ++IL+NA++D
Sbjct: 284 VHIVK--YDQDLILNNALVD 301
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+++ +K C A +G I H+ GH +F+ N L++ YV + AHQ+F+ +
Sbjct: 63 TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
+V++WTT+IS SKC H++A+++ + +V+PN T SVL +C+ + ++
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM-- 180
Query: 185 AIHAHSLRNLNENNIILDNAVLD 207
+H ++ E+++ + +A++D
Sbjct: 181 -LHCGIIKEGLESDVFVRSALID 202
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 30/140 (21%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+T++ L Q+ Q A+ L+ +M + + N+ T L ACS HA +++
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS-----------HAGLLE 376
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G +++ ++K ++ + P + +I L K G +A+ +
Sbjct: 377 DG-----------WYYFRSMKKLYG--------IDPVREHYGCMIDLLGKAGKLDDAVKL 417
Query: 155 FCGIDVKPNANTLVSVLSAC 174
++ +P+A T ++L AC
Sbjct: 418 LNEMECEPDAVTWRTLLGAC 437
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L++ + + L+ M + + ++YTF KAC + + G HA +
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + ++F+ N+L+ Y + + A ++F+ + DVV+W +II +K G K A++M
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEM 215
Query: 155 FCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + +P+ TLV+VL C+SLG+ LGK +H ++ + N+ + N ++D
Sbjct: 216 FSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272
Score = 83.6 bits (205), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY-------GHLHDIF 102
A+ + +ML+ N T L C+ A G EIH + IKY GH +
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408
Query: 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158
+ N L+ Y K + +A +F+S+ DVVTWT +I G S+ G +A+++ +
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 159 ---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAVLD 207
+PNA T+ L AC+SL + ++GK IHA++LRN N + + N ++D
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLID 521
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 43/199 (21%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N++++ + P+ A+ ++++M N C ++ T L C+ H G ++H
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRP--DNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 92 VIKYGHLHDIFIQNSLLHFY---------------VTVKDIFS----------------A 120
+ + ++F+ N L+ Y ++VKD+ S A
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 314
Query: 121 HQIFNSV----VFPDVVTWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSA 173
++F + + DVVTW+ ISG ++ G EA+ + +KPN TL+SVLS
Sbjct: 315 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG 374
Query: 174 CSSLGSRKLGKAIHAHSLR 192
C+S+G+ GK IH ++++
Sbjct: 375 CASVGALMHGKEIHCYAIK 393
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 42 TQSSTPQNAIPLYNKML--NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK-YGHL 98
+Q A+ L ++M +C + N +T + AL AC+ A + G +IHA+ ++ +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510
Query: 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG- 157
+F+ N L+ Y I A +F++++ + VTWT++++G G+ +EA+ +F
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570
Query: 158 --IDVKPNANTLVSVLSACSSLG 178
I K + TL+ VL ACS G
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSG 593
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ L A+ L+ +M+ + +T ++ AC A G +IH HVI+
Sbjct: 374 NSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIR 433
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+ D F+QNSL+ Y + SA +FN + VVTW +++ G S+ G EAI +
Sbjct: 434 -TDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISL 492
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + ++ N T ++V+ ACSS+GS + GK +H H L ++ D A++D
Sbjct: 493 FDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVH-HKLIISGLKDLFTDTALID 547
Score = 84.0 bits (206), Expect = 6e-16, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 97/182 (53%), Gaps = 4/182 (2%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK-GLE 87
P + L+K AI LY+++++ + + + F L+AC+ + H G +
Sbjct: 63 PDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGK 122
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H +IK G D I+ SLL Y ++ A ++F+ + D+V W+T++S + G
Sbjct: 123 VHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGE 182
Query: 148 HKEAIDMF-CGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+A+ MF C +D V+P+A T++SV+ C+ LG ++ +++H R + + + L N+
Sbjct: 183 VVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNS 242
Query: 205 VL 206
+L
Sbjct: 243 LL 244
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
+TL+ ++ A+ ++ M++ + T ++ C+ + +H + +
Sbjct: 171 STLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITR 230
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
D + NSLL Y D+ S+ +IF + + V+WT +IS ++ F ++A+
Sbjct: 231 KMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRS 290
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192
F + ++PN TL SVLS+C +G + GK++H ++R
Sbjct: 291 FSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVR 331
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N++L +Q+ AI L++ M + N TF ++ACS + +KG +H +I
Sbjct: 474 NSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLII 533
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G L D+F +L+ Y D+ +A +F ++ +V+W+++I+ G AI
Sbjct: 534 SG-LKDLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAIST 592
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
F + KPN ++VLSAC GS + GK
Sbjct: 593 FNQMVESGTKPNEVVFMNVLSACGHSGSVEEGK 625
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 87 EIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145
++HAH++ G L D L+ Y + S+ +F + +PD + +I C
Sbjct: 19 QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWC 78
Query: 146 GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRK---LGKAIHAHSLRNLNENNI 199
AID++ + + + SVL AC+ GSR+ +G +H ++ +++
Sbjct: 79 HLLDAAIDLYHRLVSETTQISKFVFPSVLRACA--GSREHLSVGGKVHGRIIKGGVDDDA 136
Query: 200 ILDNAVL 206
+++ ++L
Sbjct: 137 VIETSLL 143
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT+L Q P + L+ ML +H T L+ C + + G ++H + +K
Sbjct: 442 NTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLK 501
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G + FI+N L+ Y + A +IF+S+ DVV+W+T+I G ++ GF +EA+ +
Sbjct: 502 TGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALIL 561
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188
F + ++PN T V VL+ACS +G + G ++A
Sbjct: 562 FKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYA 598
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
+Q+ AI LY KML + + F +KAC+ + G ++HA VIK +
Sbjct: 144 SQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHL 203
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI----DMFCG 157
QN+L+ YV + A ++F + D+++W++II+G S+ GF EA+ +M
Sbjct: 204 IAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSF 263
Query: 158 IDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
PN S L ACSSL G IH +++ N I ++ D
Sbjct: 264 GVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCD 313
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85
I+ P N ++ L + A+ ++++M + + + L A + A +G
Sbjct: 331 IERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQG 390
Query: 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSK 144
++IH+++IK+G L D+ + NSLL Y D++ +F D V+W TI L+
Sbjct: 391 MQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTI---LTA 447
Query: 145 CGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
C H++ ++M + +P+ T+ ++L C + S KLG +H +SL+
Sbjct: 448 CLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPE 507
Query: 199 IILDNAVLD 207
+ N ++D
Sbjct: 508 QFIKNGLID 516
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127
T+ + ACS + + +G +IH H++ +D + N +L Y + A ++F+ +
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128
Query: 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGK 184
++V++T++I+G S+ G EAI ++ + D+ P+ S++ AC+S LGK
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188
Query: 185 AIHAHSLRNLNENNIILDNAVL 206
+HA ++ + +++I NA++
Sbjct: 189 QLHAQVIKLESSSHLIAQNALI 210
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N Y F +LKACS G +IH IK + SL Y + SA ++F
Sbjct: 269 NEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVF 328
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLGSRK 181
+ + PD +W II+GL+ G+ EA+ +F + P+A +L S+L A + +
Sbjct: 329 DQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALS 388
Query: 182 LGKAIHAHSLR 192
G IH++ ++
Sbjct: 389 QGMQIHSYIIK 399
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV-I 93
+TL+ QS + A+ L+ +M + NH TF L ACS ++GL+++A +
Sbjct: 543 STLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQT 602
Query: 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-------PDVVTWTTIISGLSKCG 146
++G I + H V + A ++ + F PDVV W T++S G
Sbjct: 603 EHG------ISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQG 656
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101
T + + A+ L+ KM N T L C L + G +H IK G + D
Sbjct: 319 THNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVG-IWDT 377
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
+ N+L+H Y A +F D+V W +IISG S+ G EA+ +F ++
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR--NLNENNIILDNAVLDF 208
V PN T+ S+ SAC+SLGS +G ++HA+S++ L +++ + A+LDF
Sbjct: 438 SVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDF 489
Score = 80.9 bits (198), Expect = 6e-15, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107
+ + L+N+M N YT+ + AC+ A +G H ++K G + SL
Sbjct: 224 EEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSL 283
Query: 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC---GIDVKPNA 164
L YV DI +A ++FN D+V WT +I G + G EA+ +F G+++KPN
Sbjct: 284 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNC 343
Query: 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192
T+ SVLS C + + +LG+++H S++
Sbjct: 344 VTIASVLSGCGLIENLELGRSVHGLSIK 371
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 6/186 (3%)
Query: 27 KIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84
+IP+P ++ +L+ + + LY+ ++ Y+ F++ALKAC+
Sbjct: 101 QIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDN 160
Query: 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144
G +IH ++K ++ + LL Y +I SAH++FN + +VV WT++I+G K
Sbjct: 161 GKKIHCQLVKVPSFDNVVL-TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVK 219
Query: 145 CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201
+E + +F + +V N T +++ AC+ L + GK H +++ E + L
Sbjct: 220 NDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCL 279
Query: 202 DNAVLD 207
++LD
Sbjct: 280 VTSLLD 285
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ +Q+ + A+ L+++M + + N T AC+ + G +HA+ +K
Sbjct: 412 NSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVK 471
Query: 95 YGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
G L + + +LL FY D SA IF+++ + +TW+ +I G K G ++
Sbjct: 472 LGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSL 531
Query: 153 DMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195
++F + KPN +T S+LSAC G GK + ++ N
Sbjct: 532 ELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYN 577
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 98/200 (49%), Gaps = 35/200 (17%)
Query: 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLE 87
P + N++++ T +S + I +Y ++L + +TF K+C+ + G +
Sbjct: 71 PNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQ 130
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H H+ K+G + +N+L+ Y+ D+ AH++F+ + DV++W +++SG ++ G
Sbjct: 131 VHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 148 HKEAIDMF----------------------CGID------------VKPNANTLVSVLSA 173
K+A +F C ++ ++P+ +L+SVL +
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPS 250
Query: 174 CSSLGSRKLGKAIHAHSLRN 193
C+ LGS +LGK IH ++ R
Sbjct: 251 CAQLGSLELGKWIHLYAERR 270
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108
A+ + +M + + L +C+ + + G IH + + G L + N+L+
Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALI 283
Query: 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 165
Y I A Q+F + DV++W+T+ISG + G AI+ F + VKPN
Sbjct: 284 EMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGI 343
Query: 166 TLVSVLSACSSLGSRKLG 183
T + +LSACS +G + G
Sbjct: 344 TFLGLLSACSHVGMWQEG 361
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146
+I+A +I +G F+ ++ F ++D+ A ++FN V P+V + +II +
Sbjct: 28 KINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNS 87
Query: 147 FHKEAIDMFCGIDVK----PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202
+ + I ++ + K P+ T + +C+SLGS LGK +H H + +++ +
Sbjct: 88 LYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTE 147
Query: 203 NAVLD 207
NA++D
Sbjct: 148 NALID 152
>sp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g43790
OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1
Length = 460
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 45/225 (20%)
Query: 14 SFKQLNQIHAQII-------------------------------KIPQPHIL--NTLLKL 40
S + L QIHAQII +IP P + NTL+
Sbjct: 21 SLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVCLSYALSILRQIPNPSVFLYNTLISS 80
Query: 41 LTQ---SSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKACSL-AHAHQKGLEIHAHVI 93
+ S+ A LY+++L+ S++ N +T+ KA A H+ G +HAHV+
Sbjct: 81 IVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALHAHVL 140
Query: 94 KYGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS---KCGFH 148
K+ HD F+Q +L+ FY + A +F + PD+ TW T+++ + +
Sbjct: 141 KFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSD 200
Query: 149 KEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193
+E + +F + V+PN +LV+++ +C++LG G H + L+N
Sbjct: 201 EEVLLLFMRMQVRPNELSLVALIKSCANLGEFVRGVWAHVYVLKN 245
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 24 QIIKIPQPHILNTLLKLLTQSS---TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80
+ I+ P NTLL S + + + L+ +M P N + +K+C+
Sbjct: 174 ERIREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRMQVRP---NELSLVALIKSCANLG 230
Query: 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIIS 140
+G+ H +V+K + F+ SL+ Y + A ++F+ + DV + +I
Sbjct: 231 EFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIR 290
Query: 141 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178
GL+ GF +E I+++ + + P++ T V +SACS G
Sbjct: 291 GLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSG 331
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD------IFSAHQIFNSV-----VFPD 131
Q+G+E++ +I G + D F VT+ + QIFNS+ + P
Sbjct: 299 QEGIELYKSLISQGLVPDSAT------FVVTISACSHSGLVDEGLQIFNSMKAVYGIEPK 352
Query: 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAH-- 189
V + ++ L + G +EA + + VKPNA S L + + G + G+ H
Sbjct: 353 VEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGEIALKHLL 412
Query: 190 SLRNLNENNIIL 201
L N N +L
Sbjct: 413 GLEFENSGNYVL 424
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92
+ +T+LK + S A+ + +M Y FT LK C + G EIH +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152
+K G D+F L + Y + + A ++F+ + D+V+W TI++G S+ G + A+
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221
Query: 153 DM---FCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+M C ++KP+ T+VSVL A S+L +GK IH +++R+ ++ + + A++D
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+++ Q+ P+ A+ ++ KML+ + AL AC+ ++G IH ++
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
G ++ + NSL+ Y K++ +A +F + +V+W +I G ++ G +A++
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425
Query: 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
F + VKP+ T VSV++A + L K IH +R+ + N+ + A++D
Sbjct: 426 FSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVD 481
Score = 61.6 bits (148), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAH 91
N ++ Q+ P +A+ +++M + P ++ + + A+ S+ H H K IH
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITH-HAKW--IHGV 463
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
V++ ++F+ +L+ Y I A IF+ + V TW +I G GF K A
Sbjct: 464 VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAA 523
Query: 152 IDMFCGID---VKPNANTLVSVLSACSSLG 178
+++F + +KPN T +SV+SACS G
Sbjct: 524 LELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/196 (22%), Positives = 94/196 (47%), Gaps = 5/196 (2%)
Query: 16 KQLNQIHAQIIKIPQPHIL--NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73
+Q+N+ ++P+ ++ NT++ +Q+ + A+ + M + T L
Sbjct: 184 RQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVL 243
Query: 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 133
A S G EIH + ++ G + I +L+ Y + +A Q+F+ ++ +VV
Sbjct: 244 PAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVV 303
Query: 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190
+W ++I + KEA+ +F + VKP +++ L AC+ LG + G+ IH S
Sbjct: 304 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363
Query: 191 LRNLNENNIILDNAVL 206
+ + N+ + N+++
Sbjct: 364 VELGLDRNVSVVNSLI 379
>sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protein At3g20730
OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1
Length = 565
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Query: 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128
+ +ALK CS + ++ L IH + I G ++ +++ L+ Y+ D+ A ++F+ +
Sbjct: 16 YLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRIS 75
Query: 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKA 185
DVV+WT +IS S+CG+H +A+ +F + DVK N T SVL +C LG K G
Sbjct: 76 KRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQ 135
Query: 186 IHAHSLRNLNENNIILDNAVL 206
IH + N+I+ +A+L
Sbjct: 136 IHGSVEKGNCAGNLIVRSALL 156
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DI 101
Q++ +A ++ M+ + + + LK C+ + G +IH +K + D+
Sbjct: 294 QNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDV 353
Query: 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGID-- 159
+ NSL+ Y +I A F + DV +WT++I+G + G ++AID++ ++
Sbjct: 354 ALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHE 413
Query: 160 -VKPNANTLVSVLSACSSLGSRKLGKAIH 187
+KPN T +S+LSACS G +LG I+
Sbjct: 414 RIKPNDVTFLSLLSACSHTGQTELGWKIY 442
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 6 LKSLKPTLSFKQLNQIHAQII--KIPQPHILN--TLLKLLTQSSTPQNAIPLYNKMLNCP 61
LK + L KQ + HA+ + +I + +++ ++ ++ +A+ L+ +M
Sbjct: 50 LKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHRED 109
Query: 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121
N +T+ LK+C ++G++IH V K ++ ++++LL Y + A
Sbjct: 110 VKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEAR 169
Query: 122 QIFNSVVFPDVVTWTTIISG 141
F+S+ D+V+W +I G
Sbjct: 170 LQFDSMKERDLVSWNAMIDG 189
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N ++ T ++ + L+ ML + +TF L+A + + E+H IK
Sbjct: 184 NAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIK 243
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK---CGFHKEA 151
G + SL++ YV + +A ++ D+++ T +I+G S+ C +A
Sbjct: 244 LGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNC--TSDA 301
Query: 152 IDMFCG-IDVKPNANTLV--SVLSACSSLGSRKLGKAIHAHSLRNLN-ENNIILDNAVLD 207
D+F I +K + +V S+L C+++ S +G+ IH +L++ ++ L N+++D
Sbjct: 302 FDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLID 361
Query: 208 F 208
Sbjct: 362 M 362
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 11/178 (6%)
Query: 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96
LL+ +S+ + A+ Y M+ ++Y F LKA + + G +IHAHV K+G
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 97 H-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHK--EAID 153
+ + + + N+L++ Y D + +++F+ + + V+W ++IS L C F K A++
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL--CSFEKWEMALE 185
Query: 154 MF-CGID--VKPNANTLVSVLSACSSLGSRK---LGKAIHAHSLRNLNENNIILDNAV 205
F C +D V+P++ TLVSV++ACS+L + +GK +HA+ LR N+ I++ V
Sbjct: 186 AFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243
Score = 77.4 bits (189), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 14/157 (8%)
Query: 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124
N T + AC + A + IH V+K G D F+QN+L+ Y + I A +IF
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMF--------------CGIDVKPNANTLVSV 170
+ D+VTW T+I+G H++A+ + + +KPN+ TL+++
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 523
Query: 171 LSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
L +C++L + GK IHA++++N ++ + +A++D
Sbjct: 524 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560
Score = 71.6 bits (174), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
NT+L L Q+ A+ +M+ + +T + L ACS + G E+HA+ +K
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330
Query: 95 YGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153
G L + F+ ++L+ Y K + S ++F+ + + W +I+G S+ KEA+
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 390
Query: 154 MFCGID----VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207
+F G++ + N+ T+ V+ AC G+ +AIH ++ + + + N ++D
Sbjct: 391 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMD 448
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS---LAHAHQKGLEIHAH 91
N+L+ L + A+ + ML+ + +T + ACS + G ++HA+
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151
++ G L+ FI N+L+ Y + + S+ + S D+VTW T++S L + EA
Sbjct: 228 GLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEA 286
Query: 152 IDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN--LNENNII 200
++ + V+P+ T+ SVL ACS L + GK +HA++L+N L+EN+ +
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-----------NHYTFTQALKACSLAHAHQ 83
NT++ S ++A+ L +KM N N T L +C+ A
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534
Query: 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLS 143
KG EIHA+ IK D+ + ++L+ Y + + ++F+ + +V+TW II
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594
Query: 144 KCGFHKEAID---MFCGIDVKPNANTLVSVLSACSSLG 178
G +EAID M VKPN T +SV +ACS G
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 8/189 (4%)
Query: 27 KIPQPHI----LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82
+IP P I + +++ + + A+ LY KMLN YT+ LKAC+ A
Sbjct: 60 EIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAI 119
Query: 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142
G IH+HV D+++ +L+ FY ++ A ++F+ + D+V W +ISG
Sbjct: 120 DDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGF 179
Query: 143 SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198
S + I +F + + PN +T+V + A G+ + GKA+H + R N+
Sbjct: 180 SLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSND 239
Query: 199 IILDNAVLD 207
+++ +LD
Sbjct: 240 LVVKTGILD 248
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 3/155 (1%)
Query: 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94
N+L+ + P+ + L+++M + T L ACS A G H + +
Sbjct: 378 NSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVV 437
Query: 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDM 154
+G+ + I N+L+ Y + A ++F+++ D+V+W T++ G G KEA+ +
Sbjct: 438 HGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSL 497
Query: 155 FCGID---VKPNANTLVSVLSACSSLGSRKLGKAI 186
F + V P+ TL+++LSACS G GK +
Sbjct: 498 FNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQL 532
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147
+H + +K G + D+ +QN+++ FY + A + F+ + DV+++ ++I+G
Sbjct: 330 VHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCR 389
Query: 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204
+E+ +F + ++P+ TL+ VL+ACS L + G + H + + + N + NA
Sbjct: 390 PEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNA 449
Query: 205 VLD 207
++D
Sbjct: 450 LMD 452
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122
S N T A A A ++G +H + + G +D+ ++ +L Y K I A +
Sbjct: 202 SPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARR 261
Query: 123 IFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSV-----LSACSSL 177
+F+ + VTW+ +I G + KEA ++F + V N + V L C+
Sbjct: 262 VFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARF 321
Query: 178 GSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208
G G+ +H ++++ ++ + N ++ F
Sbjct: 322 GDLSGGRCVHCYAVKAGFILDLTVQNTIISF 352
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 122 QIFNSV------VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 175
Q+FNS+ V P + + + L++ G+ EA D + +P+ L ++LSAC
Sbjct: 531 QLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACW 590
Query: 176 SLGSRKLGKAIHA--HSLRNLNENNIILDN 203
+ + +LG + SL E+ ++L N
Sbjct: 591 TYKNAELGNEVSKKMQSLGETTESLVLLSN 620
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,561,125
Number of Sequences: 539616
Number of extensions: 2869603
Number of successful extensions: 11018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 8476
Number of HSP's gapped (non-prelim): 1672
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)