Query 045511
Match_columns 209
No_of_seqs 152 out of 1386
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.6E-41 7.8E-46 288.9 17.4 204 1-209 264-472 (697)
2 PLN03218 maturation of RBCL 1; 100.0 1.9E-39 4.1E-44 283.7 19.1 207 2-209 478-694 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 2.4E-39 5.2E-44 283.1 19.1 206 2-208 585-798 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.4E-38 3.1E-43 278.3 17.3 204 1-209 227-434 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.7E-38 3.8E-43 272.4 17.0 203 2-209 164-370 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 5.8E-38 1.3E-42 274.5 16.9 203 2-209 127-333 (857)
7 PRK11788 tetratricopeptide rep 99.7 4.8E-15 1E-19 119.5 16.4 195 7-206 119-322 (389)
8 PRK11788 tetratricopeptide rep 99.7 4.9E-15 1.1E-19 119.5 16.4 165 35-200 184-354 (389)
9 PF13041 PPR_2: PPR repeat fam 99.6 4.9E-16 1.1E-20 88.4 4.9 50 29-78 1-50 (50)
10 PF13041 PPR_2: PPR repeat fam 99.6 3E-15 6.6E-20 85.1 6.1 50 64-113 1-50 (50)
11 TIGR02917 PEP_TPR_lipo putativ 99.5 7.9E-12 1.7E-16 109.8 18.5 61 32-93 602-662 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.4 1.5E-11 3.3E-16 108.0 19.0 198 4-206 609-811 (899)
13 KOG4422 Uncharacterized conser 99.4 1.3E-11 2.9E-16 97.0 13.7 161 29-193 205-385 (625)
14 KOG4422 Uncharacterized conser 99.3 2.9E-10 6.4E-15 89.6 15.3 112 65-180 206-328 (625)
15 KOG4318 Bicoid mRNA stability 99.2 1.4E-10 3E-15 98.1 12.7 182 17-205 11-277 (1088)
16 PF13429 TPR_15: Tetratricopep 99.2 2.2E-10 4.7E-15 88.7 10.3 181 6-190 88-274 (280)
17 PF12854 PPR_1: PPR repeat 99.2 3.5E-11 7.5E-16 62.2 4.0 32 96-127 2-33 (34)
18 TIGR02521 type_IV_pilW type IV 99.2 5.8E-09 1.3E-13 77.4 17.8 160 32-193 32-198 (234)
19 TIGR02521 type_IV_pilW type IV 99.1 1.6E-08 3.4E-13 75.0 18.1 184 7-193 43-232 (234)
20 PRK15174 Vi polysaccharide exp 99.1 1E-08 2.2E-13 88.2 18.5 152 41-193 187-347 (656)
21 PF13429 TPR_15: Tetratricopep 99.1 2.4E-10 5.1E-15 88.5 7.4 148 43-192 89-242 (280)
22 PRK15174 Vi polysaccharide exp 99.1 1.3E-08 2.8E-13 87.6 18.2 183 7-193 122-313 (656)
23 KOG4318 Bicoid mRNA stability 99.1 1.2E-09 2.6E-14 92.6 9.9 150 52-206 11-246 (1088)
24 PF12854 PPR_1: PPR repeat 99.0 2.8E-10 6.1E-15 58.7 3.6 33 60-92 1-33 (34)
25 TIGR00990 3a0801s09 mitochondr 99.0 5.2E-08 1.1E-12 83.4 18.2 159 32-193 332-496 (615)
26 TIGR00990 3a0801s09 mitochondr 99.0 7.4E-08 1.6E-12 82.5 18.4 147 7-158 343-493 (615)
27 PRK09782 bacteriophage N4 rece 98.9 2E-07 4.4E-12 83.0 18.0 157 34-193 545-706 (987)
28 PRK09782 bacteriophage N4 rece 98.9 3.6E-07 7.9E-12 81.4 19.3 183 5-193 486-672 (987)
29 PRK10049 pgaA outer membrane p 98.8 3.8E-07 8.2E-12 80.0 18.0 185 7-193 249-456 (765)
30 PRK12370 invasion protein regu 98.8 6.5E-07 1.4E-11 75.8 17.2 174 12-192 321-501 (553)
31 PRK10747 putative protoheme IX 98.8 3.2E-07 6.9E-12 74.6 14.3 60 132-191 328-388 (398)
32 PRK11447 cellulose synthase su 98.7 9.5E-07 2.1E-11 80.9 17.6 184 7-193 281-524 (1157)
33 PRK11447 cellulose synthase su 98.7 1.4E-06 3.1E-11 79.7 18.5 185 7-194 473-701 (1157)
34 TIGR00756 PPR pentatricopeptid 98.7 1.2E-08 2.7E-13 52.8 3.1 33 33-65 2-34 (35)
35 TIGR00540 hemY_coli hemY prote 98.7 4.8E-07 1E-11 73.8 13.9 118 8-127 166-289 (409)
36 PRK12370 invasion protein regu 98.7 3E-06 6.5E-11 71.8 18.4 147 45-193 318-470 (553)
37 PRK10049 pgaA outer membrane p 98.7 2.5E-06 5.4E-11 75.0 17.9 184 12-198 213-425 (765)
38 PRK11189 lipoprotein NlpI; Pro 98.7 4.9E-06 1.1E-10 65.0 17.7 162 32-195 65-267 (296)
39 PRK14574 hmsH outer membrane p 98.7 2E-06 4.4E-11 75.4 16.8 186 7-193 304-513 (822)
40 PF13812 PPR_3: Pentatricopept 98.7 2.7E-08 5.7E-13 51.3 3.0 32 33-64 3-34 (34)
41 TIGR00756 PPR pentatricopeptid 98.6 3.4E-08 7.3E-13 51.1 3.3 34 166-199 2-35 (35)
42 KOG4626 O-linked N-acetylgluco 98.6 4.6E-07 1E-11 75.0 11.3 152 32-186 287-444 (966)
43 COG3071 HemY Uncharacterized e 98.6 4.7E-06 1E-10 65.5 16.3 191 7-200 165-397 (400)
44 PF08579 RPM2: Mitochondrial r 98.6 4E-07 8.8E-12 59.3 8.4 80 35-114 29-117 (120)
45 PF13812 PPR_3: Pentatricopept 98.6 7E-08 1.5E-12 49.7 3.5 33 165-197 2-34 (34)
46 PRK10747 putative protoheme IX 98.6 3.7E-06 7.9E-11 68.4 14.5 193 7-206 165-368 (398)
47 PRK14574 hmsH outer membrane p 98.5 8.3E-06 1.8E-10 71.6 16.8 172 6-188 45-227 (822)
48 COG2956 Predicted N-acetylgluc 98.5 5.4E-06 1.2E-10 63.7 13.5 190 2-196 75-281 (389)
49 KOG1840 Kinesin light chain [C 98.4 2E-05 4.3E-10 65.3 15.9 185 7-191 253-477 (508)
50 PF04733 Coatomer_E: Coatomer 98.4 6.8E-07 1.5E-11 69.4 7.0 146 40-193 111-265 (290)
51 TIGR00540 hemY_coli hemY prote 98.4 4.4E-05 9.5E-10 62.4 17.5 154 7-164 130-296 (409)
52 KOG4626 O-linked N-acetylgluco 98.4 3.8E-05 8.2E-10 64.1 16.5 180 7-193 298-485 (966)
53 PF01535 PPR: PPR repeat; Int 98.4 2.6E-07 5.7E-12 46.3 2.6 29 33-61 2-30 (31)
54 KOG1129 TPR repeat-containing 98.4 5.1E-06 1.1E-10 64.1 10.3 186 2-193 229-458 (478)
55 PF04733 Coatomer_E: Coatomer 98.4 6.8E-06 1.5E-10 63.8 11.1 160 28-193 63-230 (290)
56 COG3063 PilF Tfp pilus assembl 98.4 0.00011 2.5E-09 54.0 16.5 182 7-192 47-235 (250)
57 TIGR03302 OM_YfiO outer membra 98.4 4.9E-05 1.1E-09 57.2 15.2 160 32-193 34-232 (235)
58 PF01535 PPR: PPR repeat; Int 98.3 5.1E-07 1.1E-11 45.2 2.8 31 165-195 1-31 (31)
59 COG3063 PilF Tfp pilus assembl 98.3 9.2E-05 2E-09 54.5 15.3 165 32-199 36-207 (250)
60 cd05804 StaR_like StaR_like; a 98.3 0.00012 2.7E-09 58.3 17.0 182 8-192 19-214 (355)
61 KOG2003 TPR repeat-containing 98.3 0.0001 2.2E-09 59.5 15.7 167 9-179 538-709 (840)
62 PF06239 ECSIT: Evolutionarily 98.2 1E-05 2.2E-10 59.1 8.5 100 25-124 41-162 (228)
63 PRK11189 lipoprotein NlpI; Pro 98.2 0.0003 6.5E-09 55.0 16.9 146 45-191 40-192 (296)
64 KOG1126 DNA-binding cell divis 98.2 2.2E-05 4.7E-10 65.4 10.8 160 32-192 422-619 (638)
65 PF10037 MRP-S27: Mitochondria 98.2 2.3E-05 4.9E-10 63.6 10.7 128 17-144 50-185 (429)
66 COG3071 HemY Uncharacterized e 98.2 0.00039 8.4E-09 55.0 17.0 168 32-200 119-299 (400)
67 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.3E-05 1.8E-09 60.0 13.8 121 33-158 171-294 (395)
68 TIGR03302 OM_YfiO outer membra 98.2 9.3E-05 2E-09 55.6 13.2 151 7-158 45-229 (235)
69 PRK10370 formate-dependent nit 98.2 0.00034 7.4E-09 51.4 15.7 144 38-194 23-174 (198)
70 KOG1840 Kinesin light chain [C 98.1 7.2E-05 1.6E-09 62.1 12.9 165 29-193 196-396 (508)
71 PF10037 MRP-S27: Mitochondria 98.1 5.3E-05 1.2E-09 61.5 11.8 118 60-177 60-186 (429)
72 PRK15179 Vi polysaccharide bio 98.1 0.0003 6.5E-09 61.0 16.6 137 30-169 85-227 (694)
73 COG5010 TadD Flp pilus assembl 98.1 0.00019 4E-09 53.8 13.4 116 70-186 104-224 (257)
74 KOG1129 TPR repeat-containing 98.1 1.6E-05 3.6E-10 61.4 8.0 156 4-164 264-462 (478)
75 COG2956 Predicted N-acetylgluc 98.1 0.00022 4.8E-09 55.1 13.8 196 8-209 48-259 (389)
76 KOG2003 TPR repeat-containing 98.1 0.00016 3.5E-09 58.4 13.4 192 7-207 502-702 (840)
77 PRK15359 type III secretion sy 98.1 8.3E-05 1.8E-09 51.7 10.7 92 73-165 31-126 (144)
78 TIGR02552 LcrH_SycD type III s 98.1 0.00011 2.5E-09 50.1 11.1 99 69-168 20-122 (135)
79 PF09976 TPR_21: Tetratricopep 98.1 0.00045 9.7E-09 48.0 13.8 125 32-157 13-143 (145)
80 KOG1070 rRNA processing protei 98.0 0.00029 6.2E-09 63.6 15.2 176 21-197 1447-1667(1710)
81 KOG1126 DNA-binding cell divis 98.0 0.00011 2.5E-09 61.3 11.8 178 7-190 365-549 (638)
82 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0003 6.6E-09 56.8 13.3 120 67-190 170-294 (395)
83 PRK15359 type III secretion sy 98.0 0.00028 6E-09 49.1 11.6 94 101-194 24-122 (144)
84 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.4E-09 56.1 11.1 141 32-174 2-150 (280)
85 PRK10370 formate-dependent nit 98.0 0.00041 8.8E-09 51.0 12.6 122 44-167 52-181 (198)
86 PF06239 ECSIT: Evolutionarily 97.9 9.2E-05 2E-09 54.2 8.6 30 179-208 118-147 (228)
87 KOG1155 Anaphase-promoting com 97.9 0.0011 2.4E-08 53.7 15.3 178 8-190 343-533 (559)
88 KOG2076 RNA polymerase III tra 97.9 0.0003 6.5E-09 60.8 12.8 184 7-191 292-510 (895)
89 cd05804 StaR_like StaR_like; a 97.9 0.00053 1.1E-08 54.7 13.7 145 7-158 55-212 (355)
90 KOG1155 Anaphase-promoting com 97.9 0.00051 1.1E-08 55.5 13.0 147 42-189 273-491 (559)
91 COG5010 TadD Flp pilus assembl 97.9 0.0038 8.3E-08 46.9 16.8 126 30-157 99-227 (257)
92 COG4783 Putative Zn-dependent 97.9 0.00078 1.7E-08 54.7 14.0 136 40-193 315-454 (484)
93 PF08579 RPM2: Mitochondrial r 97.9 0.00018 3.9E-09 47.1 8.5 86 68-176 27-116 (120)
94 KOG2002 TPR-containing nuclear 97.9 0.00023 4.9E-09 62.0 11.4 190 12-204 547-756 (1018)
95 PF05843 Suf: Suppressor of fo 97.9 0.001 2.3E-08 51.5 14.3 126 67-193 2-136 (280)
96 PF09976 TPR_21: Tetratricopep 97.8 0.002 4.4E-08 44.7 14.0 122 67-189 13-143 (145)
97 PRK15179 Vi polysaccharide bio 97.8 0.0021 4.5E-08 55.9 16.6 131 62-193 82-217 (694)
98 TIGR02552 LcrH_SycD type III s 97.8 0.00086 1.9E-08 45.7 11.9 95 32-128 18-112 (135)
99 PRK14720 transcript cleavage f 97.8 0.00045 9.8E-09 60.9 12.6 119 2-127 37-175 (906)
100 KOG1070 rRNA processing protei 97.8 0.0027 5.8E-08 57.8 17.3 145 46-193 1440-1593(1710)
101 cd00189 TPR Tetratricopeptide 97.8 0.00037 8.1E-09 43.2 8.9 87 37-125 6-92 (100)
102 COG4783 Putative Zn-dependent 97.8 0.0034 7.4E-08 51.1 15.8 160 30-193 273-437 (484)
103 PF12569 NARP1: NMDA receptor- 97.7 0.0036 7.8E-08 52.6 16.0 182 7-193 16-257 (517)
104 PF12569 NARP1: NMDA receptor- 97.7 0.0072 1.6E-07 50.8 17.5 163 30-193 142-334 (517)
105 KOG3081 Vesicle coat complex C 97.7 0.0019 4E-08 48.8 12.4 109 41-158 118-233 (299)
106 PRK02603 photosystem I assembl 97.7 0.0012 2.6E-08 47.2 11.2 85 32-117 36-122 (172)
107 KOG3785 Uncharacterized conser 97.7 0.0012 2.6E-08 51.9 11.6 162 37-202 291-497 (557)
108 KOG3081 Vesicle coat complex C 97.7 0.0034 7.4E-08 47.4 13.4 137 52-194 94-237 (299)
109 cd00189 TPR Tetratricopeptide 97.6 0.00089 1.9E-08 41.4 8.9 89 69-158 3-94 (100)
110 KOG1915 Cell cycle control pro 97.6 0.0047 1E-07 50.5 13.9 183 7-193 78-273 (677)
111 PF04840 Vps16_C: Vps16, C-ter 97.6 0.006 1.3E-07 48.1 14.4 85 102-189 178-262 (319)
112 PF12895 Apc3: Anaphase-promot 97.6 0.00049 1.1E-08 43.0 6.9 78 79-156 2-82 (84)
113 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0022 4.8E-08 42.3 10.4 91 68-158 4-102 (119)
114 PF12921 ATP13: Mitochondrial 97.6 0.0011 2.4E-08 44.9 8.7 80 100-179 1-103 (126)
115 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0038 8.2E-08 41.2 11.1 94 34-127 5-102 (119)
116 PLN03088 SGT1, suppressor of 97.5 0.0021 4.6E-08 51.6 11.5 98 76-174 12-113 (356)
117 KOG0985 Vesicle coat protein c 97.5 0.0039 8.4E-08 55.3 13.2 134 26-176 1128-1261(1666)
118 PF14559 TPR_19: Tetratricopep 97.5 0.0011 2.5E-08 39.3 7.4 60 78-138 3-64 (68)
119 KOG1915 Cell cycle control pro 97.5 0.0062 1.3E-07 49.8 13.1 149 43-193 85-236 (677)
120 PF12921 ATP13: Mitochondrial 97.4 0.002 4.4E-08 43.6 9.0 27 31-57 2-28 (126)
121 KOG1173 Anaphase-promoting com 97.4 0.0032 7E-08 52.2 11.6 164 10-177 361-535 (611)
122 PF14559 TPR_19: Tetratricopep 97.4 0.001 2.2E-08 39.6 6.8 60 112-171 2-65 (68)
123 PF04840 Vps16_C: Vps16, C-ter 97.4 0.028 6.1E-07 44.4 16.4 125 32-175 178-302 (319)
124 CHL00033 ycf3 photosystem I as 97.4 0.0045 9.7E-08 44.1 11.0 61 67-127 36-98 (168)
125 KOG0547 Translocase of outer m 97.4 0.0067 1.5E-07 49.7 12.7 180 8-191 339-530 (606)
126 KOG0547 Translocase of outer m 97.4 0.0058 1.2E-07 50.0 12.1 178 7-190 372-563 (606)
127 PRK02603 photosystem I assembl 97.4 0.0095 2.1E-07 42.6 12.2 82 66-147 35-121 (172)
128 KOG2076 RNA polymerase III tra 97.3 0.013 2.8E-07 51.2 14.0 156 37-192 383-554 (895)
129 KOG1173 Anaphase-promoting com 97.3 0.027 6E-07 46.9 15.2 175 29-207 309-530 (611)
130 CHL00033 ycf3 photosystem I as 97.3 0.0072 1.6E-07 43.0 10.9 93 32-125 36-137 (168)
131 PF12895 Apc3: Anaphase-promot 97.3 0.00051 1.1E-08 43.0 4.3 81 44-126 2-83 (84)
132 PRK10153 DNA-binding transcrip 97.3 0.025 5.4E-07 47.7 15.4 59 133-191 421-480 (517)
133 KOG3060 Uncharacterized conser 97.2 0.029 6.4E-07 42.3 13.4 151 4-158 61-217 (289)
134 KOG1128 Uncharacterized conser 97.2 0.0067 1.5E-07 51.8 11.2 157 32-190 425-613 (777)
135 PF03704 BTAD: Bacterial trans 97.2 0.0026 5.6E-08 44.1 7.4 64 103-166 64-138 (146)
136 KOG2002 TPR-containing nuclear 97.1 0.006 1.3E-07 53.6 10.4 193 8-205 509-722 (1018)
137 KOG2796 Uncharacterized conser 97.1 0.027 5.9E-07 42.8 12.6 140 32-171 178-326 (366)
138 KOG3616 Selective LIM binding 97.1 0.0032 7E-08 54.1 8.5 104 77-187 743-847 (1636)
139 PF12688 TPR_5: Tetratrico pep 97.1 0.017 3.7E-07 38.8 10.5 105 39-143 9-117 (120)
140 KOG0495 HAT repeat protein [RN 97.1 0.096 2.1E-06 44.8 16.8 180 8-193 597-782 (913)
141 PRK10866 outer membrane biogen 97.1 0.0092 2E-07 45.3 10.3 160 32-192 34-240 (243)
142 KOG0495 HAT repeat protein [RN 97.0 0.13 2.9E-06 44.0 16.9 154 33-188 518-675 (913)
143 PLN03088 SGT1, suppressor of 97.0 0.016 3.4E-07 46.6 11.4 87 39-127 10-96 (356)
144 KOG2047 mRNA splicing factor [ 97.0 0.064 1.4E-06 45.7 14.8 153 37-193 108-277 (835)
145 PLN02789 farnesyltranstransfer 97.0 0.13 2.8E-06 40.7 16.2 182 7-192 49-249 (320)
146 KOG3941 Intermediate in Toll s 96.9 0.0057 1.2E-07 46.8 7.6 99 29-127 65-185 (406)
147 KOG3785 Uncharacterized conser 96.9 0.046 1E-06 43.4 12.6 131 35-167 363-497 (557)
148 PRK10153 DNA-binding transcrip 96.9 0.059 1.3E-06 45.5 14.3 140 27-168 333-490 (517)
149 KOG4340 Uncharacterized conser 96.9 0.046 1E-06 42.4 12.2 161 34-199 13-213 (459)
150 KOG4340 Uncharacterized conser 96.9 0.052 1.1E-06 42.1 12.3 155 32-189 145-335 (459)
151 KOG2053 Mitochondrial inherita 96.9 0.06 1.3E-06 47.2 14.0 117 7-128 21-141 (932)
152 PF03704 BTAD: Bacterial trans 96.8 0.0061 1.3E-07 42.2 6.7 70 133-202 63-139 (146)
153 PRK04841 transcriptional regul 96.8 0.12 2.6E-06 46.7 16.2 186 7-192 421-640 (903)
154 PF13525 YfiO: Outer membrane 96.8 0.038 8.2E-07 40.7 10.9 173 7-184 17-198 (203)
155 KOG3060 Uncharacterized conser 96.7 0.16 3.5E-06 38.5 16.0 160 32-194 53-221 (289)
156 PRK04841 transcriptional regul 96.7 0.13 2.9E-06 46.5 16.0 188 7-194 543-761 (903)
157 KOG1125 TPR repeat-containing 96.7 0.13 2.7E-06 43.2 14.1 108 82-190 410-524 (579)
158 smart00299 CLH Clathrin heavy 96.6 0.12 2.5E-06 35.5 12.1 88 32-127 8-95 (140)
159 KOG1914 mRNA cleavage and poly 96.6 0.32 6.9E-06 40.8 15.7 141 48-190 348-498 (656)
160 KOG2796 Uncharacterized conser 96.6 0.22 4.7E-06 38.1 15.8 136 67-206 178-326 (366)
161 PF13432 TPR_16: Tetratricopep 96.6 0.0069 1.5E-07 35.6 4.8 49 77-126 8-56 (65)
162 KOG1914 mRNA cleavage and poly 96.6 0.32 6.9E-06 40.8 15.5 147 32-180 367-526 (656)
163 KOG2047 mRNA splicing factor [ 96.5 0.043 9.3E-07 46.7 10.5 166 7-176 114-293 (835)
164 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.065 1.4E-06 43.8 10.8 144 31-176 397-547 (660)
165 PF12688 TPR_5: Tetratrico pep 96.4 0.094 2E-06 35.2 10.1 101 74-175 9-117 (120)
166 KOG2376 Signal recognition par 96.4 0.062 1.3E-06 45.1 10.4 46 113-158 91-136 (652)
167 PF13414 TPR_11: TPR repeat; P 96.3 0.035 7.7E-07 32.8 7.0 60 66-126 3-63 (69)
168 PF13424 TPR_12: Tetratricopep 96.3 0.013 2.9E-07 35.7 5.2 55 102-156 6-70 (78)
169 PRK14720 transcript cleavage f 96.3 0.35 7.5E-06 43.5 15.4 147 32-197 117-288 (906)
170 PF13432 TPR_16: Tetratricopep 96.3 0.021 4.5E-07 33.5 5.8 54 40-94 6-59 (65)
171 KOG3941 Intermediate in Toll s 96.3 0.034 7.3E-07 42.8 7.8 89 121-209 54-168 (406)
172 COG4700 Uncharacterized protei 96.2 0.29 6.4E-06 35.5 12.4 103 62-164 85-193 (251)
173 KOG1128 Uncharacterized conser 96.2 0.052 1.1E-06 46.6 9.3 169 3-176 431-635 (777)
174 PF00637 Clathrin: Region in C 96.2 0.0013 2.8E-08 45.5 -0.1 83 37-126 13-95 (143)
175 KOG3616 Selective LIM binding 96.1 0.14 3.1E-06 44.5 11.7 110 37-157 738-849 (1636)
176 KOG0553 TPR repeat-containing 96.1 0.11 2.3E-06 40.2 9.9 143 19-174 36-192 (304)
177 PLN02789 farnesyltranstransfer 96.1 0.51 1.1E-05 37.4 17.0 175 12-190 89-299 (320)
178 smart00299 CLH Clathrin heavy 96.1 0.25 5.5E-06 33.8 14.2 124 69-207 10-133 (140)
179 PRK10803 tol-pal system protei 96.1 0.09 2E-06 40.4 9.6 93 101-193 143-246 (263)
180 PF14938 SNAP: Soluble NSF att 96.1 0.16 3.4E-06 39.5 11.1 159 32-193 36-225 (282)
181 PF13424 TPR_12: Tetratricopep 96.0 0.029 6.3E-07 34.2 5.7 60 67-126 6-71 (78)
182 PRK15363 pathogenicity island 96.0 0.13 2.9E-06 36.0 9.5 82 76-158 45-129 (157)
183 PF13414 TPR_11: TPR repeat; P 96.0 0.022 4.7E-07 33.8 4.9 57 134-190 5-64 (69)
184 KOG1174 Anaphase-promoting com 95.9 0.72 1.6E-05 37.6 14.4 30 30-59 231-260 (564)
185 PF00637 Clathrin: Region in C 95.9 0.0037 7.9E-08 43.2 1.3 85 71-158 12-96 (143)
186 PRK10803 tol-pal system protei 95.8 0.2 4.4E-06 38.5 10.6 100 66-165 143-251 (263)
187 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.25 5.4E-06 40.6 11.1 127 66-193 397-531 (660)
188 PF13170 DUF4003: Protein of u 95.8 0.3 6.5E-06 38.3 11.4 120 82-203 78-221 (297)
189 PF13371 TPR_9: Tetratricopept 95.8 0.047 1E-06 32.7 5.7 14 80-93 9-22 (73)
190 PRK15363 pathogenicity island 95.7 0.18 3.9E-06 35.4 8.9 79 112-190 46-129 (157)
191 KOG1174 Anaphase-promoting com 95.6 0.19 4.2E-06 40.7 9.8 148 39-188 342-495 (564)
192 PF14938 SNAP: Soluble NSF att 95.6 0.25 5.5E-06 38.3 10.6 91 68-158 157-263 (282)
193 KOG2053 Mitochondrial inherita 95.5 0.2 4.3E-06 44.2 10.3 127 42-174 20-154 (932)
194 KOG0985 Vesicle coat protein c 95.5 1.9 4.1E-05 39.3 18.0 72 132-208 1104-1175(1666)
195 COG4700 Uncharacterized protei 95.3 0.75 1.6E-05 33.4 15.1 145 8-155 69-216 (251)
196 PF02284 COX5A: Cytochrome c o 95.3 0.45 9.8E-06 30.7 9.1 60 49-109 28-87 (108)
197 KOG3617 WD40 and TPR repeat-co 95.2 1.5 3.2E-05 39.1 14.3 154 29-192 755-940 (1416)
198 PF13371 TPR_9: Tetratricopept 95.1 0.1 2.2E-06 31.1 5.6 55 40-95 4-58 (73)
199 PF07035 Mic1: Colon cancer-as 95.0 0.85 1.9E-05 32.5 13.0 134 52-194 15-150 (167)
200 KOG1156 N-terminal acetyltrans 95.0 1.9 4.2E-05 37.1 14.1 94 32-127 76-169 (700)
201 KOG1127 TPR repeat-containing 95.0 0.63 1.4E-05 41.9 11.7 158 32-192 493-658 (1238)
202 PF09205 DUF1955: Domain of un 95.0 0.74 1.6E-05 31.5 11.4 66 131-196 85-152 (161)
203 COG4235 Cytochrome c biogenesi 94.8 0.9 2E-05 35.2 11.0 97 98-194 153-257 (287)
204 cd00923 Cyt_c_Oxidase_Va Cytoc 94.8 0.63 1.4E-05 29.8 9.4 60 49-109 25-84 (103)
205 PRK10866 outer membrane biogen 94.7 1.4 3.1E-05 33.4 12.6 76 66-143 33-115 (243)
206 KOG0553 TPR repeat-containing 94.6 0.6 1.3E-05 36.2 9.5 100 41-142 91-192 (304)
207 KOG2376 Signal recognition par 94.4 2.9 6.3E-05 35.6 14.9 154 32-188 340-515 (652)
208 KOG2280 Vacuolar assembly/sort 94.3 1.8 4E-05 37.8 12.7 92 96-190 679-770 (829)
209 PF13281 DUF4071: Domain of un 94.3 2.3 5.1E-05 34.4 15.5 161 33-193 143-334 (374)
210 COG3629 DnrI DNA-binding trans 94.3 0.44 9.6E-06 36.8 8.4 73 101-173 153-236 (280)
211 COG3629 DnrI DNA-binding trans 94.1 0.35 7.7E-06 37.4 7.6 75 132-206 153-234 (280)
212 PF13762 MNE1: Mitochondrial s 94.0 0.94 2E-05 31.4 8.7 84 32-115 40-129 (145)
213 PF10300 DUF3808: Protein of u 94.0 3.3 7.2E-05 34.8 14.9 151 38-190 195-373 (468)
214 COG4235 Cytochrome c biogenesi 93.9 2.3 5.1E-05 33.0 12.8 108 65-173 155-269 (287)
215 KOG1125 TPR repeat-containing 93.9 1.5 3.1E-05 37.1 11.0 110 48-158 411-524 (579)
216 PF07035 Mic1: Colon cancer-as 93.8 1.7 3.7E-05 31.0 14.2 116 25-150 23-138 (167)
217 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.28 6.1E-06 40.3 6.8 96 99-196 73-177 (453)
218 KOG2280 Vacuolar assembly/sort 93.8 3.7 8.1E-05 36.0 13.5 114 29-157 682-795 (829)
219 PLN03098 LPA1 LOW PSII ACCUMUL 93.7 0.79 1.7E-05 37.8 9.2 64 30-95 74-141 (453)
220 KOG0624 dsRNA-activated protei 93.6 3.2 6.9E-05 33.3 12.5 119 7-127 118-249 (504)
221 KOG4570 Uncharacterized conser 93.3 0.53 1.2E-05 36.9 7.1 94 30-127 63-161 (418)
222 PF09205 DUF1955: Domain of un 93.1 0.47 1E-05 32.4 5.9 65 32-97 87-151 (161)
223 PF09613 HrpB1_HrpK: Bacterial 93.1 1.6 3.4E-05 30.8 8.8 50 77-128 21-71 (160)
224 KOG4570 Uncharacterized conser 93.1 2 4.3E-05 33.9 9.9 100 94-194 57-165 (418)
225 KOG1156 N-terminal acetyltrans 92.9 4.7 0.0001 34.8 12.6 164 3-170 15-185 (700)
226 PF13929 mRNA_stabil: mRNA sta 92.7 1 2.2E-05 34.9 8.0 99 29-127 162-264 (292)
227 KOG4555 TPR repeat-containing 92.6 2.2 4.7E-05 29.2 8.5 87 40-127 52-141 (175)
228 COG1729 Uncharacterized protei 92.4 3.2 7E-05 31.8 10.2 89 68-158 144-241 (262)
229 KOG1538 Uncharacterized conser 92.3 4.1 8.9E-05 35.4 11.5 88 102-194 748-847 (1081)
230 PF13929 mRNA_stabil: mRNA sta 92.3 4.4 9.6E-05 31.5 15.2 111 47-157 144-263 (292)
231 TIGR02561 HrpB1_HrpK type III 92.0 1.1 2.3E-05 31.3 6.6 68 8-80 23-90 (153)
232 KOG2610 Uncharacterized conser 92.0 5.4 0.00012 31.9 12.1 144 44-189 116-272 (491)
233 KOG3617 WD40 and TPR repeat-co 91.9 2.6 5.7E-05 37.6 10.2 52 136-190 942-993 (1416)
234 PRK15331 chaperone protein Sic 91.8 1.5 3.4E-05 31.0 7.4 79 78-157 49-130 (165)
235 PF04053 Coatomer_WDAD: Coatom 91.4 6.1 0.00013 33.0 11.7 82 99-188 345-426 (443)
236 KOG0624 dsRNA-activated protei 91.4 6.5 0.00014 31.6 15.0 175 7-189 50-248 (504)
237 KOG0543 FKBP-type peptidyl-pro 91.3 4.1 8.8E-05 33.1 10.1 93 101-193 257-355 (397)
238 PF07079 DUF1347: Protein of u 91.3 2.5 5.4E-05 35.0 9.0 130 43-176 18-179 (549)
239 PF13176 TPR_7: Tetratricopept 91.2 0.44 9.4E-06 24.2 3.3 22 168-189 3-24 (36)
240 PF07079 DUF1347: Protein of u 91.2 6.2 0.00013 32.8 11.1 135 7-145 18-180 (549)
241 PF13762 MNE1: Mitochondrial s 91.2 3.7 8.1E-05 28.5 10.5 93 90-182 26-133 (145)
242 PF13525 YfiO: Outer membrane 91.1 4.8 0.0001 29.5 12.6 146 39-193 13-170 (203)
243 PF13281 DUF4071: Domain of un 91.0 7.4 0.00016 31.6 13.8 153 8-162 150-336 (374)
244 KOG1127 TPR repeat-containing 91.0 3.3 7.1E-05 37.7 10.0 127 30-158 525-656 (1238)
245 KOG2114 Vacuolar assembly/sort 90.9 2 4.3E-05 38.1 8.6 114 37-158 403-516 (933)
246 smart00638 LPD_N Lipoprotein N 90.9 9.7 0.00021 32.8 14.2 120 31-151 340-479 (574)
247 PF13170 DUF4003: Protein of u 90.6 7 0.00015 30.7 11.9 122 47-170 78-223 (297)
248 PF10602 RPN7: 26S proteasome 90.6 5 0.00011 28.9 10.7 58 69-126 39-98 (177)
249 COG4105 ComL DNA uptake lipopr 90.4 6.6 0.00014 30.0 15.4 161 32-193 36-233 (254)
250 PF02284 COX5A: Cytochrome c o 90.3 1.4 3.1E-05 28.5 5.5 71 136-207 12-87 (108)
251 PF13176 TPR_7: Tetratricopept 90.3 0.6 1.3E-05 23.7 3.3 23 104-126 2-24 (36)
252 PF13512 TPR_18: Tetratricopep 90.3 2.1 4.6E-05 29.6 6.8 75 41-115 20-96 (142)
253 PF13428 TPR_14: Tetratricopep 90.2 1.7 3.6E-05 23.1 5.2 23 72-94 7-29 (44)
254 PRK15331 chaperone protein Sic 90.1 2.2 4.8E-05 30.2 6.9 88 39-128 45-132 (165)
255 PF07163 Pex26: Pex26 protein; 89.9 3.4 7.5E-05 32.0 8.2 92 34-125 86-182 (309)
256 PF13512 TPR_18: Tetratricopep 89.7 3.2 6.8E-05 28.7 7.3 81 66-147 11-97 (142)
257 KOG2610 Uncharacterized conser 89.6 9.5 0.00021 30.6 11.6 146 7-158 115-273 (491)
258 PF04184 ST7: ST7 protein; In 89.5 2.1 4.5E-05 35.8 7.3 70 40-109 268-339 (539)
259 COG1729 Uncharacterized protei 89.5 7.8 0.00017 29.8 9.9 90 103-193 144-244 (262)
260 PF13428 TPR_14: Tetratricopep 89.4 0.94 2E-05 24.1 3.8 17 141-157 10-26 (44)
261 cd00923 Cyt_c_Oxidase_Va Cytoc 89.3 4.2 9E-05 26.1 7.3 58 148-206 23-83 (103)
262 PF10602 RPN7: 26S proteasome 89.3 6.5 0.00014 28.3 9.9 96 32-127 37-139 (177)
263 COG3898 Uncharacterized membra 88.6 12 0.00026 30.6 16.4 94 101-194 188-293 (531)
264 cd08819 CARD_MDA5_2 Caspase ac 88.5 4.3 9.4E-05 25.5 6.6 67 85-153 21-87 (88)
265 KOG0548 Molecular co-chaperone 88.5 2.7 5.7E-05 35.3 7.3 100 74-174 10-114 (539)
266 PF13374 TPR_10: Tetratricopep 88.4 1.1 2.3E-05 23.1 3.6 25 102-126 3-27 (42)
267 PF09613 HrpB1_HrpK: Bacterial 88.2 5.3 0.00011 28.2 7.7 51 43-95 22-73 (160)
268 COG0457 NrfG FOG: TPR repeat [ 88.1 7.3 0.00016 27.5 16.1 161 32-193 96-265 (291)
269 PF10300 DUF3808: Protein of u 87.4 16 0.00035 30.7 11.5 125 69-193 191-334 (468)
270 KOG4162 Predicted calmodulin-b 87.4 19 0.0004 32.0 11.8 123 70-193 654-783 (799)
271 KOG0543 FKBP-type peptidyl-pro 87.2 9.3 0.0002 31.1 9.4 91 67-158 258-352 (397)
272 TIGR02561 HrpB1_HrpK type III 87.0 8.4 0.00018 26.9 8.8 18 111-128 54-71 (153)
273 PF04053 Coatomer_WDAD: Coatom 86.7 2.7 6E-05 35.0 6.6 113 37-166 324-436 (443)
274 PF08631 SPO22: Meiosis protei 86.6 13 0.00029 28.8 15.3 157 42-199 4-192 (278)
275 COG3898 Uncharacterized membra 86.1 18 0.00038 29.8 15.1 161 29-193 185-392 (531)
276 COG4649 Uncharacterized protei 86.0 11 0.00024 27.3 9.0 125 32-158 60-193 (221)
277 PF04184 ST7: ST7 protein; In 85.6 13 0.00027 31.4 9.6 67 75-141 268-340 (539)
278 KOG4162 Predicted calmodulin-b 85.6 26 0.00056 31.2 12.9 125 32-158 651-780 (799)
279 PF13431 TPR_17: Tetratricopep 85.5 1.9 4.1E-05 21.6 3.3 22 100-121 12-33 (34)
280 KOG0550 Molecular chaperone (D 85.4 19 0.00042 29.7 10.6 125 32-158 202-347 (486)
281 PF00515 TPR_1: Tetratricopept 85.4 1.3 2.9E-05 21.7 2.8 17 140-156 9-25 (34)
282 PF11663 Toxin_YhaV: Toxin wit 84.9 1.5 3.2E-05 29.9 3.4 30 44-75 108-137 (140)
283 KOG0548 Molecular co-chaperone 84.7 13 0.00029 31.4 9.4 136 40-176 307-471 (539)
284 PF07721 TPR_4: Tetratricopept 84.4 2.2 4.8E-05 19.8 3.1 17 108-124 8-24 (26)
285 PF11848 DUF3368: Domain of un 84.3 3.9 8.4E-05 22.4 4.5 32 78-109 14-45 (48)
286 PF13374 TPR_10: Tetratricopep 84.3 2.2 4.8E-05 21.8 3.5 27 165-191 3-29 (42)
287 KOG2114 Vacuolar assembly/sort 84.0 24 0.00052 31.8 10.9 138 40-190 377-516 (933)
288 KOG4077 Cytochrome c oxidase, 83.6 10 0.00022 25.8 6.8 40 54-93 72-111 (149)
289 TIGR03504 FimV_Cterm FimV C-te 83.3 1.5 3.2E-05 23.7 2.4 28 170-197 5-32 (44)
290 cd08326 CARD_CASP9 Caspase act 83.0 7.2 0.00016 24.3 5.8 61 87-151 20-80 (84)
291 KOG4567 GTPase-activating prot 82.3 21 0.00045 28.3 9.0 79 51-134 263-351 (370)
292 PF11848 DUF3368: Domain of un 82.2 4.8 0.0001 22.0 4.3 38 38-75 9-46 (48)
293 PF11207 DUF2989: Protein of u 81.6 14 0.00031 27.2 7.6 67 117-184 122-198 (203)
294 PHA02875 ankyrin repeat protei 81.6 7.5 0.00016 31.8 7.1 151 35-199 36-196 (413)
295 PF01347 Vitellogenin_N: Lipop 81.4 23 0.0005 30.8 10.3 159 31-190 378-566 (618)
296 COG4455 ImpE Protein of avirul 81.0 8.8 0.00019 28.8 6.4 119 68-193 3-134 (273)
297 COG4105 ComL DNA uptake lipopr 80.8 23 0.0005 27.1 11.5 158 6-164 45-237 (254)
298 TIGR02508 type_III_yscG type I 80.7 13 0.00028 24.2 8.1 75 81-158 20-94 (115)
299 PRK10564 maltose regulon perip 80.7 3.4 7.4E-05 32.3 4.4 48 159-206 251-299 (303)
300 PF11846 DUF3366: Domain of un 80.7 11 0.00023 27.4 6.9 50 78-127 120-170 (193)
301 PF07719 TPR_2: Tetratricopept 80.6 2.7 5.8E-05 20.4 2.8 11 144-154 13-23 (34)
302 COG3118 Thioredoxin domain-con 80.1 27 0.00058 27.4 11.7 171 5-181 112-289 (304)
303 KOG1585 Protein required for f 79.9 25 0.00054 27.0 13.3 84 104-188 153-251 (308)
304 cd00280 TRFH Telomeric Repeat 79.9 17 0.00038 26.4 7.4 66 81-146 84-157 (200)
305 TIGR02508 type_III_yscG type I 79.9 14 0.0003 24.0 8.3 60 139-202 46-105 (115)
306 PF11207 DUF2989: Protein of u 79.5 22 0.00049 26.2 9.7 67 84-151 124-197 (203)
307 PF11846 DUF3366: Domain of un 79.4 8.3 0.00018 28.0 6.0 33 159-191 139-171 (193)
308 KOG1585 Protein required for f 79.2 27 0.00058 26.9 8.8 76 134-209 152-238 (308)
309 KOG2041 WD40 repeat protein [G 78.8 47 0.001 29.6 10.8 69 25-96 686-764 (1189)
310 PF09477 Type_III_YscG: Bacter 78.4 16 0.00035 24.0 8.9 76 80-158 20-95 (116)
311 KOG4555 TPR repeat-containing 78.3 19 0.00042 24.8 9.6 83 75-158 52-141 (175)
312 PF07064 RIC1: RIC1; InterPro 77.5 30 0.00066 26.6 14.4 150 32-194 83-250 (258)
313 cd08332 CARD_CASP2 Caspase act 77.3 15 0.00033 23.1 6.0 39 113-151 46-84 (90)
314 TIGR03504 FimV_Cterm FimV C-te 77.0 6.7 0.00015 21.1 3.7 23 73-95 6-28 (44)
315 PF07575 Nucleopor_Nup85: Nup8 76.6 19 0.00041 31.1 8.2 159 30-205 371-536 (566)
316 PF12796 Ank_2: Ankyrin repeat 76.3 8.3 0.00018 23.6 4.7 80 111-198 4-86 (89)
317 cd00280 TRFH Telomeric Repeat 74.6 30 0.00066 25.2 8.5 67 46-115 84-157 (200)
318 cd08329 CARD_BIRC2_BIRC3 Caspa 74.2 16 0.00035 23.2 5.5 66 85-155 25-90 (94)
319 cd08819 CARD_MDA5_2 Caspase ac 74.2 19 0.00041 22.6 6.5 68 49-122 20-87 (88)
320 COG0735 Fur Fe2+/Zn2+ uptake r 73.8 25 0.00054 24.4 6.9 64 52-116 7-70 (145)
321 KOG1920 IkappaB kinase complex 73.6 83 0.0018 29.8 12.6 51 108-158 972-1025(1265)
322 COG2178 Predicted RNA-binding 73.5 33 0.00072 25.2 7.9 93 100-192 28-149 (204)
323 KOG2063 Vacuolar assembly/sort 73.5 75 0.0016 29.2 12.3 114 32-145 505-639 (877)
324 PF08631 SPO22: Meiosis protei 73.3 41 0.00088 26.0 17.5 152 5-158 3-183 (278)
325 PF13934 ELYS: Nuclear pore co 72.7 38 0.00082 25.5 11.4 101 69-175 79-183 (226)
326 COG4649 Uncharacterized protei 72.3 35 0.00075 24.8 12.3 132 65-197 58-200 (221)
327 COG5159 RPN6 26S proteasome re 71.5 48 0.001 26.2 9.0 122 37-158 9-151 (421)
328 KOG1464 COP9 signalosome, subu 71.2 48 0.001 26.0 9.4 26 168-193 149-174 (440)
329 PF02259 FAT: FAT domain; Int 71.1 49 0.0011 26.1 11.0 165 30-198 30-218 (352)
330 PHA02875 ankyrin repeat protei 71.0 30 0.00066 28.2 7.9 153 36-199 70-230 (413)
331 cd07153 Fur_like Ferric uptake 70.9 17 0.00037 23.8 5.4 46 37-82 6-51 (116)
332 COG5108 RPO41 Mitochondrial DN 70.9 34 0.00073 30.3 8.0 72 71-142 33-113 (1117)
333 PF02847 MA3: MA3 domain; Int 70.1 14 0.00029 24.1 4.7 26 105-130 6-31 (113)
334 PF07163 Pex26: Pex26 protein; 69.9 51 0.0011 25.8 8.3 85 72-156 89-182 (309)
335 PRK10564 maltose regulon perip 69.7 6.8 0.00015 30.7 3.6 32 33-64 259-290 (303)
336 COG1747 Uncharacterized N-term 69.4 73 0.0016 27.4 15.7 49 146-194 183-235 (711)
337 PF12793 SgrR_N: Sugar transpo 69.3 30 0.00066 22.9 6.8 44 16-61 4-47 (115)
338 PF13174 TPR_6: Tetratricopept 69.0 7.4 0.00016 18.5 2.6 22 172-193 8-29 (33)
339 COG0457 NrfG FOG: TPR repeat [ 68.9 37 0.00079 23.7 16.7 162 31-193 59-231 (291)
340 PRK09857 putative transposase; 68.6 42 0.0009 26.4 7.8 63 35-98 210-272 (292)
341 PF13181 TPR_8: Tetratricopept 68.1 12 0.00027 18.0 3.4 24 103-126 3-26 (34)
342 COG3947 Response regulator con 67.9 46 0.001 26.3 7.6 45 135-179 282-328 (361)
343 TIGR03581 EF_0839 conserved hy 67.7 13 0.00028 27.7 4.4 82 46-127 136-234 (236)
344 KOG0276 Vesicle coat complex C 67.0 89 0.0019 27.4 9.6 130 40-193 646-775 (794)
345 KOG2066 Vacuolar assembly/sort 66.9 29 0.00064 31.0 7.0 119 32-158 393-531 (846)
346 KOG4077 Cytochrome c oxidase, 66.8 29 0.00062 23.7 5.5 47 159-206 79-125 (149)
347 PF11663 Toxin_YhaV: Toxin wit 66.5 5.8 0.00013 27.1 2.3 30 177-208 108-137 (140)
348 PF02259 FAT: FAT domain; Int 65.8 65 0.0014 25.4 10.6 60 99-158 144-210 (352)
349 KOG4334 Uncharacterized conser 65.1 2.1 4.6E-05 35.5 0.0 144 60-209 409-570 (650)
350 PF02607 B12-binding_2: B12 bi 64.7 15 0.00033 22.1 3.8 39 43-81 13-51 (79)
351 smart00028 TPR Tetratricopepti 64.6 11 0.00025 16.7 2.8 13 143-155 12-24 (34)
352 PF14689 SPOB_a: Sensor_kinase 63.6 27 0.00058 20.2 4.9 44 82-127 6-49 (62)
353 PRK11639 zinc uptake transcrip 63.2 43 0.00092 23.9 6.4 60 57-117 17-76 (169)
354 PF01475 FUR: Ferric uptake re 63.1 21 0.00045 23.6 4.6 44 37-80 13-56 (120)
355 PF11838 ERAP1_C: ERAP1-like C 62.9 72 0.0016 24.9 15.9 77 82-158 146-227 (324)
356 PHA02940 hypothetical protein; 62.8 65 0.0014 24.7 7.3 72 33-112 144-215 (315)
357 PRK10292 hypothetical protein; 62.6 22 0.00047 20.8 3.8 32 159-190 29-60 (69)
358 cd08330 CARD_ASC_NALP1 Caspase 62.1 35 0.00076 21.1 6.5 55 84-142 16-70 (82)
359 PF11817 Foie-gras_1: Foie gra 61.2 18 0.00039 27.5 4.5 54 137-190 183-244 (247)
360 COG4455 ImpE Protein of avirul 61.0 71 0.0015 24.2 8.2 81 33-114 3-85 (273)
361 cd08323 CARD_APAF1 Caspase act 59.8 41 0.00088 21.1 6.5 39 113-151 40-78 (86)
362 PF11123 DNA_Packaging_2: DNA 59.8 35 0.00076 20.7 4.5 33 81-114 12-44 (82)
363 KOG1538 Uncharacterized conser 59.4 35 0.00076 30.1 6.1 112 38-158 710-843 (1081)
364 KOG2396 HAT (Half-A-TPR) repea 59.4 1.1E+02 0.0025 26.1 14.2 70 121-190 448-522 (568)
365 cd08789 CARD_IPS-1_RIG-I Caspa 59.1 41 0.00089 20.9 5.6 49 103-152 34-82 (84)
366 KOG2908 26S proteasome regulat 59.0 95 0.0021 25.1 15.7 102 18-119 61-175 (380)
367 PRK09462 fur ferric uptake reg 58.8 58 0.0012 22.5 7.0 61 56-117 7-68 (148)
368 COG3947 Response regulator con 58.0 93 0.002 24.7 8.9 108 62-169 223-358 (361)
369 KOG2582 COP9 signalosome, subu 58.0 1E+02 0.0022 25.2 8.7 173 32-205 103-318 (422)
370 KOG1920 IkappaB kinase complex 58.0 1.3E+02 0.0027 28.7 9.5 109 33-157 941-1051(1265)
371 PF08311 Mad3_BUB1_I: Mad3/BUB 57.2 57 0.0012 21.9 8.9 92 32-126 23-124 (126)
372 COG0735 Fur Fe2+/Zn2+ uptake r 57.0 40 0.00086 23.4 5.2 63 18-81 8-70 (145)
373 PRK15180 Vi polysaccharide bio 56.9 60 0.0013 27.7 6.9 118 6-127 300-417 (831)
374 COG5108 RPO41 Mitochondrial DN 56.8 51 0.0011 29.2 6.6 87 106-192 33-131 (1117)
375 PF11838 ERAP1_C: ERAP1-like C 56.8 93 0.002 24.3 14.7 127 47-176 146-287 (324)
376 PRK13341 recombination factor 55.9 1.6E+02 0.0034 26.6 11.0 40 162-202 257-296 (725)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 55.6 61 0.0013 21.8 7.5 46 46-91 78-124 (126)
378 COG3118 Thioredoxin domain-con 55.2 1E+02 0.0022 24.3 14.8 115 75-193 143-265 (304)
379 cd08812 CARD_RIG-I_like Caspas 55.2 50 0.0011 20.7 5.7 44 108-151 41-85 (88)
380 PRK14700 recombination factor 54.9 1.1E+02 0.0023 24.3 11.4 84 32-116 125-216 (300)
381 COG2405 Predicted nucleic acid 54.8 29 0.00064 24.0 4.0 44 67-111 111-154 (157)
382 cd07153 Fur_like Ferric uptake 54.1 35 0.00076 22.2 4.5 47 72-118 6-52 (116)
383 smart00544 MA3 Domain in DAP-5 53.6 59 0.0013 21.0 7.3 55 104-158 5-63 (113)
384 PRK11639 zinc uptake transcrip 53.6 38 0.00083 24.1 4.9 65 18-83 13-77 (169)
385 PRK13342 recombination factor 53.5 1.3E+02 0.0028 24.9 9.4 43 83-127 154-200 (413)
386 KOG0403 Neoplastic transformat 52.6 49 0.0011 27.8 5.7 71 105-176 513-586 (645)
387 PRK12357 glutaminase; Reviewed 52.3 1.2E+02 0.0026 24.3 11.8 21 19-39 90-110 (326)
388 PF10475 DUF2450: Protein of u 52.3 82 0.0018 24.7 6.9 85 32-121 128-217 (291)
389 PRK14958 DNA polymerase III su 51.9 1.3E+02 0.0029 25.7 8.5 58 44-102 211-281 (509)
390 KOG0890 Protein kinase of the 51.6 1.5E+02 0.0032 30.5 9.3 107 75-184 1392-1503(2382)
391 smart00804 TAP_C C-terminal do 51.5 8.6 0.00019 22.5 1.0 25 43-67 37-62 (63)
392 PF12796 Ank_2: Ankyrin repeat 51.0 40 0.00086 20.4 4.2 19 107-125 29-47 (89)
393 PLN03192 Voltage-dependent pot 51.0 1.1E+02 0.0025 27.8 8.4 19 139-157 626-644 (823)
394 KOG1550 Extracellular protein 50.9 1.7E+02 0.0036 25.4 10.8 147 45-195 226-410 (552)
395 PF10475 DUF2450: Protein of u 50.2 98 0.0021 24.2 7.0 81 101-184 127-217 (291)
396 PF03943 TAP_C: TAP C-terminal 50.1 8.3 0.00018 21.5 0.8 24 43-66 25-49 (51)
397 PF10579 Rapsyn_N: Rapsyn N-te 49.0 62 0.0014 20.0 5.0 44 79-122 19-64 (80)
398 cd08790 DED_DEDD Death Effecto 48.9 34 0.00073 21.9 3.4 59 42-102 35-93 (97)
399 PF11817 Foie-gras_1: Foie gra 48.5 97 0.0021 23.5 6.6 55 103-157 180-243 (247)
400 smart00777 Mad3_BUB1_I Mad3/BU 47.9 85 0.0018 21.2 7.6 91 32-125 23-123 (125)
401 PF07575 Nucleopor_Nup85: Nup8 47.9 1.9E+02 0.0041 25.2 11.6 160 32-198 299-472 (566)
402 PF14853 Fis1_TPR_C: Fis1 C-te 47.7 39 0.00085 18.9 3.3 28 140-167 9-37 (53)
403 PF02847 MA3: MA3 domain; Int 47.4 45 0.00098 21.5 4.2 25 35-59 6-30 (113)
404 KOG2297 Predicted translation 46.7 1.5E+02 0.0032 23.8 7.2 19 62-80 219-237 (412)
405 PHA03100 ankyrin repeat protei 46.6 1.2E+02 0.0027 25.2 7.6 149 36-199 37-204 (480)
406 TIGR01529 argR_whole arginine 46.6 57 0.0012 22.7 4.7 41 37-77 6-46 (146)
407 KOG4648 Uncharacterized conser 46.5 1.1E+02 0.0023 25.0 6.5 49 76-126 107-156 (536)
408 PF01475 FUR: Ferric uptake re 46.3 40 0.00086 22.2 3.8 47 71-117 12-58 (120)
409 PF09868 DUF2095: Uncharacteri 45.7 89 0.0019 20.8 5.2 33 72-105 67-99 (128)
410 PF10255 Paf67: RNA polymerase 45.3 1.8E+02 0.0039 24.2 10.5 59 100-158 74-148 (404)
411 COG2405 Predicted nucleic acid 45.1 32 0.00069 23.8 3.1 56 150-207 97-152 (157)
412 PF12926 MOZART2: Mitotic-spin 44.4 80 0.0017 19.9 7.2 41 87-127 29-69 (88)
413 PF03745 DUF309: Domain of unk 44.2 64 0.0014 18.7 5.0 46 78-123 11-61 (62)
414 KOG4648 Uncharacterized conser 44.0 84 0.0018 25.6 5.6 85 40-127 106-191 (536)
415 cd08315 Death_TRAILR_DR4_DR5 D 43.9 59 0.0013 20.8 4.1 47 148-194 47-94 (96)
416 cd08325 CARD_CASP1-like Caspas 43.9 60 0.0013 20.1 4.0 32 116-147 46-77 (83)
417 KOG1130 Predicted G-alpha GTPa 43.7 51 0.0011 27.5 4.5 125 68-192 197-343 (639)
418 PRK08691 DNA polymerase III su 43.4 1.4E+02 0.0031 26.8 7.4 19 80-98 259-277 (709)
419 PF12862 Apc5: Anaphase-promot 42.5 85 0.0018 19.6 5.1 15 176-190 53-67 (94)
420 KOG0292 Vesicle coat complex C 42.4 1.2E+02 0.0025 28.1 6.7 44 144-193 739-782 (1202)
421 COG4003 Uncharacterized protei 42.3 56 0.0012 20.3 3.5 24 171-194 38-61 (98)
422 KOG0508 Ankyrin repeat protein 41.9 81 0.0017 26.7 5.4 140 43-188 51-204 (615)
423 PRK09462 fur ferric uptake reg 41.3 1E+02 0.0022 21.3 5.3 48 36-83 21-69 (148)
424 KOG0991 Replication factor C, 41.2 1.1E+02 0.0024 23.6 5.6 36 162-198 237-272 (333)
425 PHA03100 ankyrin repeat protei 40.8 2.1E+02 0.0046 23.8 10.0 41 87-127 157-199 (480)
426 cd08326 CARD_CASP9 Caspase act 40.8 89 0.0019 19.4 7.6 63 50-120 18-80 (84)
427 KOG0550 Molecular chaperone (D 40.3 2.2E+02 0.0048 23.8 10.6 161 29-194 166-351 (486)
428 KOG1130 Predicted G-alpha GTPa 40.2 18 0.0004 29.9 1.6 46 142-187 27-78 (639)
429 cd07229 Pat_TGL3_like Triacylg 40.0 2E+02 0.0043 23.8 7.4 59 91-149 176-254 (391)
430 COG2178 Predicted RNA-binding 39.6 1.1E+02 0.0023 22.6 5.2 98 30-128 28-148 (204)
431 PRK13341 recombination factor 39.5 2.4E+02 0.0053 25.5 8.4 74 43-116 270-348 (725)
432 PRK14956 DNA polymerase III su 39.3 2.2E+02 0.0048 24.3 7.7 61 43-103 212-285 (484)
433 COG5187 RPN7 26S proteasome re 39.2 98 0.0021 24.6 5.2 94 31-126 115-217 (412)
434 COG0819 TenA Putative transcri 38.1 1.7E+02 0.0037 21.9 7.3 60 29-88 107-177 (218)
435 KOG0890 Protein kinase of the 38.1 3.5E+02 0.0076 28.1 9.6 145 36-188 1388-1542(2382)
436 PF10345 Cohesin_load: Cohesin 37.8 2.8E+02 0.0061 24.3 9.5 126 2-127 106-251 (608)
437 KOG4414 COP9 signalosome, subu 37.6 1.2E+02 0.0025 21.3 4.9 31 98-128 36-66 (197)
438 PF14669 Asp_Glu_race_2: Putat 37.5 1.5E+02 0.0033 22.0 5.7 56 71-126 137-206 (233)
439 PF10255 Paf67: RNA polymerase 37.4 2E+02 0.0044 23.9 7.1 56 103-158 124-190 (404)
440 PRK14951 DNA polymerase III su 37.2 2.4E+02 0.0051 25.0 7.9 31 69-100 254-284 (618)
441 PF14669 Asp_Glu_race_2: Putat 37.2 66 0.0014 23.8 3.8 59 32-90 133-205 (233)
442 TIGR03236 dnd_assoc_1 dnd syst 37.1 1E+02 0.0022 25.1 5.3 55 64-118 294-348 (363)
443 PF04124 Dor1: Dor1-like famil 37.0 51 0.0011 26.4 3.7 35 136-170 110-148 (338)
444 PF02184 HAT: HAT (Half-A-TPR) 36.8 25 0.00055 17.5 1.2 21 180-202 3-23 (32)
445 KOG0991 Replication factor C, 36.7 1.1E+02 0.0025 23.5 5.1 53 121-175 228-283 (333)
446 PF09454 Vps23_core: Vps23 cor 36.6 91 0.002 18.3 4.8 47 29-76 6-52 (65)
447 PRK12356 glutaminase; Reviewed 36.6 2.2E+02 0.0048 22.8 9.9 22 19-40 86-107 (319)
448 PF08986 DUF1889: Domain of un 36.5 83 0.0018 20.1 3.7 50 148-197 25-80 (119)
449 PF08780 NTase_sub_bind: Nucle 36.3 70 0.0015 21.5 3.8 48 47-95 40-88 (124)
450 COG2812 DnaX DNA polymerase II 36.1 2.6E+02 0.0056 24.1 7.7 61 41-103 208-282 (515)
451 smart00638 LPD_N Lipoprotein N 36.0 2.9E+02 0.0063 23.9 14.9 152 29-186 308-482 (574)
452 PRK14135 recX recombination re 35.9 2E+02 0.0043 22.0 13.4 147 51-200 92-252 (263)
453 cd01671 CARD Caspase activatio 35.5 99 0.0022 18.4 5.6 31 116-146 42-72 (80)
454 PRK07003 DNA polymerase III su 35.5 3.6E+02 0.0078 24.8 9.3 55 44-99 211-278 (830)
455 TIGR01503 MthylAspMut_E methyl 35.4 2.8E+02 0.0061 23.6 8.5 45 80-127 68-112 (480)
456 KOG2223 Uncharacterized conser 34.8 98 0.0021 25.9 4.8 92 44-139 413-513 (586)
457 COG2137 OraA Uncharacterized p 34.8 1.7E+02 0.0038 21.0 10.4 105 50-158 54-164 (174)
458 KOG0686 COP9 signalosome, subu 34.4 2.8E+02 0.006 23.2 13.4 174 13-193 125-333 (466)
459 PF09477 Type_III_YscG: Bacter 34.4 1.4E+02 0.003 19.8 7.7 76 116-194 21-99 (116)
460 PF10366 Vps39_1: Vacuolar sor 34.3 1.3E+02 0.0029 19.6 7.8 24 104-127 42-65 (108)
461 KOG3364 Membrane protein invol 34.3 1.2E+02 0.0027 21.0 4.6 47 81-127 50-97 (149)
462 PRK14962 DNA polymerase III su 34.3 2.9E+02 0.0063 23.5 8.3 89 19-108 232-326 (472)
463 PF05476 PET122: PET122; Inte 34.2 2.2E+02 0.0048 22.0 7.4 77 111-189 20-105 (267)
464 smart00164 TBC Domain in Tre-2 34.1 1.3E+02 0.0029 21.5 5.3 90 34-127 95-193 (199)
465 PRK13342 recombination factor 33.7 2.7E+02 0.006 23.0 10.7 32 79-110 243-274 (413)
466 PRK09687 putative lyase; Provi 33.3 2.3E+02 0.0051 22.0 16.0 62 128-193 202-263 (280)
467 COG5159 RPN6 26S proteasome re 33.0 2.5E+02 0.0055 22.4 9.9 126 75-200 12-165 (421)
468 PF08461 HTH_12: Ribonuclease 32.6 1.1E+02 0.0023 18.0 4.6 44 37-80 3-46 (66)
469 PF04097 Nic96: Nup93/Nic96; 32.3 77 0.0017 27.8 4.3 86 37-127 264-353 (613)
470 PF12069 DUF3549: Protein of u 32.2 2.7E+02 0.0059 22.5 9.0 21 130-150 228-248 (340)
471 KOG0403 Neoplastic transformat 32.2 2.1E+02 0.0045 24.3 6.3 61 134-194 511-573 (645)
472 KOG4234 TPR repeat-containing 32.1 1.9E+02 0.0042 21.7 5.6 51 7-57 107-160 (271)
473 smart00777 Mad3_BUB1_I Mad3/BU 32.0 1.6E+02 0.0035 19.9 7.1 43 48-90 80-123 (125)
474 KOG1464 COP9 signalosome, subu 32.0 2.6E+02 0.0056 22.1 6.9 77 79-155 40-128 (440)
475 PF04190 DUF410: Protein of un 31.9 2.4E+02 0.0052 21.7 11.5 109 41-150 20-139 (260)
476 PF11768 DUF3312: Protein of u 31.9 2.1E+02 0.0045 24.8 6.5 23 105-127 412-434 (545)
477 PHA02798 ankyrin-like protein; 31.8 3E+02 0.0064 23.2 7.6 143 51-199 51-214 (489)
478 PF14840 DNA_pol3_delt_C: Proc 31.5 27 0.00059 23.5 1.1 27 44-70 10-36 (125)
479 COG5210 GTPase-activating prot 31.4 1.7E+02 0.0037 24.9 6.1 80 47-127 319-403 (496)
480 KOG3677 RNA polymerase I-assoc 30.9 2.1E+02 0.0045 24.0 6.1 60 67-127 236-298 (525)
481 cd01041 Rubrerythrin Rubreryth 30.9 1.7E+02 0.0037 19.7 5.8 37 84-120 73-109 (134)
482 PRK11906 transcriptional regul 30.4 3.4E+02 0.0074 23.0 11.8 128 11-140 316-448 (458)
483 PF11768 DUF3312: Protein of u 30.3 2.3E+02 0.0051 24.5 6.5 65 134-198 410-478 (545)
484 PF09520 RE_TdeIII: Type II re 29.5 53 0.0011 25.2 2.5 125 78-209 97-247 (251)
485 TIGR03814 Gln_ase glutaminase 29.4 2.9E+02 0.0063 21.9 9.5 21 19-39 74-94 (300)
486 PRK06645 DNA polymerase III su 29.0 3.5E+02 0.0076 23.3 7.5 70 30-102 208-293 (507)
487 cd00045 DED The Death Effector 29.0 1.3E+02 0.0029 18.1 3.8 16 46-61 35-50 (77)
488 PF04090 RNA_pol_I_TF: RNA pol 28.9 2.4E+02 0.0052 20.9 10.8 49 68-117 43-92 (199)
489 cd08332 CARD_CASP2 Caspase act 28.9 1.5E+02 0.0033 18.6 7.8 63 50-120 22-84 (90)
490 PHA02859 ankyrin repeat protei 28.8 2.3E+02 0.0051 20.7 6.0 120 70-199 22-153 (209)
491 KOG4511 Uncharacterized conser 28.7 2.9E+02 0.0062 21.6 6.3 41 150-190 125-166 (335)
492 PLN03192 Voltage-dependent pot 28.7 2.1E+02 0.0046 26.1 6.6 105 76-186 532-641 (823)
493 smart00114 CARD Caspase recrui 28.6 1.5E+02 0.0032 18.3 5.4 31 115-145 48-78 (88)
494 cd08323 CARD_APAF1 Caspase act 28.4 1.5E+02 0.0034 18.5 8.5 67 50-124 16-82 (86)
495 PRK14952 DNA polymerase III su 28.4 3.8E+02 0.0083 23.6 7.7 58 42-100 208-279 (584)
496 PRK15180 Vi polysaccharide bio 28.3 3.9E+02 0.0085 23.1 9.5 112 78-191 301-418 (831)
497 cd08318 Death_NMPP84 Death dom 28.2 1.5E+02 0.0033 18.3 4.1 41 82-124 46-86 (86)
498 KOG2300 Uncharacterized conser 28.2 3.9E+02 0.0085 23.1 10.6 115 44-158 336-471 (629)
499 cd08810 CARD_BCL10 Caspase act 28.2 1.6E+02 0.0034 18.4 5.2 33 113-146 42-74 (84)
500 smart00031 DED Death effector 27.5 1.5E+02 0.0032 18.0 4.0 40 47-87 37-76 (79)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=288.94 Aligned_cols=204 Identities=20% Similarity=0.310 Sum_probs=196.4
Q ss_pred Chhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 045511 1 MFVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79 (209)
Q Consensus 1 ~li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 79 (209)
+||+++ +.|+.++|.+.|+++ ..+|+.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m-----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-----CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 367888 899999999888877 34799999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
|+++.|.++++.|.+.|+.||..+||+||++|++.|++++|.++|++|.+||..+||+||.+|++.|+.++|.++|++|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH-hccCCCchhHhHhhhcC
Q 045511 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR-NLNENNIILDNAVLDFM 209 (209)
Q Consensus 159 --~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~y 209 (209)
|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 9999999999999999999999999999999976 69999999999999875
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-39 Score=283.68 Aligned_cols=207 Identities=13% Similarity=0.147 Sum_probs=107.6
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
||+++ +.|+.+.+.+.+.++.+.. ..||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 34444 4555555555555544432 235555555555555555555555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHH--hccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC----CCcHhHHHHHHHHHHhCCChHHHHHH
Q 045511 81 AHQKGLEIHAHVIK--YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV----FPDVVTWTTIISGLSKCGFHKEAIDM 154 (209)
Q Consensus 81 ~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~ 154 (209)
++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.++|++|. .|+..+||++|.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 55555555555543 3445555555555555555555555555555552 24445555555555555555555555
Q ss_pred HhhC---CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 155 FCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 155 ~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
|++| |+.||..||+++|.+|++.|++++|.+++..|.+.|+.|+..+|++||++|
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5555 555555555555555555555555555555555555555555555555443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-39 Score=283.06 Aligned_cols=206 Identities=15% Similarity=0.188 Sum_probs=151.7
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
||+++ +.|+.++|.+.+.++.+.. ..|+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 45556 6666666666666665543 346667777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc----CCCcHhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++| ..||..+||+||.+|++.|++++|.++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777 35777777777777777777777777777
Q ss_pred hC---CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhc
Q 045511 157 GI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208 (209)
Q Consensus 157 ~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 208 (209)
+| |+.||..||+.+|.+|++.|++++|.+++.+|.+.|+.||..+|++||.+
T Consensus 744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77 77777777777777777777777777777777777777777777777653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-38 Score=278.32 Aligned_cols=204 Identities=24% Similarity=0.385 Sum_probs=196.9
Q ss_pred Chhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 045511 1 MFVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79 (209)
Q Consensus 1 ~li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 79 (209)
+|++++ +.|+.++|.+.|+++ ..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m-----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRM-----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcC-----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 367778 888888888888877 35899999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
|+++.+.+++..|.+.|+.||..+||+||.+|++.|++++|+++|++|..||..+||++|.+|++.|++++|+++|++|
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 159 --~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=272.40 Aligned_cols=203 Identities=20% Similarity=0.292 Sum_probs=192.9
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
|++++ +.|+.+.|.+.|+++. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 56677 7888888888887773 48999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC--
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-- 158 (209)
..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|+++|..+||+||.+|++.|++++|.++|++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 159 -~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
|+.||..||+++|++|++.|++++|.+++..|.+.|+.||..+|++||++|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-38 Score=274.53 Aligned_cols=203 Identities=25% Similarity=0.444 Sum_probs=195.3
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
|+.++ +.|+.+.|.+.|.++. .||..+||++|.+|++.|++++|.++|++|...|+.||..||+.+|++|++.+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 56667 7888888888887773 48999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC--
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-- 158 (209)
+++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|.+|
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 159 -~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
|+.||..||+.+|++|++.|+.+.+.+++..|.+.|+.||..+||+||++|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.67 E-value=4.8e-15 Score=119.55 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=107.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH----HHHHHHHHHHhccccH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH----YTFTQALKACSLAHAH 82 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~ 82 (209)
+.++.+.|.+.+.++.+. ..++..+++.+...+.+.|++++|.+.++.+.+.+..++. ..|..+...+.+.|++
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 556666666666665543 2234456666666666666666666666666554422211 1234444555566666
Q ss_pred HHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCc--HhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD--VVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
++|.+.|+.+.+.. +.+...+..+...|.+.|++++|.++|+++. .|+ ..+++.+..+|...|++++|...++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666665543 2234455555566666666666666666553 222 234555566666666666666666665
Q ss_pred -CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 159 -DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 159 -~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
...|+...+..+...+.+.|++++|..++..+.+. .|+..+++.++
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 44555555555556666666666666666555444 45555554443
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.67 E-value=4.9e-15 Score=119.49 Aligned_cols=165 Identities=10% Similarity=-0.010 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 114 (209)
..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.+...|.+.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 344444455555555555555555432 1223344445555555555555555555555443222233455555555555
Q ss_pred CChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhcc---ccchhHHHHHHH
Q 045511 115 KDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSS---LGSRKLGKAIHA 188 (209)
Q Consensus 115 g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~---~g~~~~a~~~~~ 188 (209)
|++++|.+.++++. .|+...+..+...+.+.|++++|..+|.++ ...|+..++..++..+.. .|+.+++..+++
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 55555555555542 244444455555555555555555555554 445555555555554432 335555555555
Q ss_pred HHHHhccCCCch
Q 045511 189 HSLRNLNENNII 200 (209)
Q Consensus 189 ~~~~~~~~p~~~ 200 (209)
.+.+.++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 555555555543
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.63 E-value=4.9e-16 Score=88.37 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 78 (209)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45555555555555555555555555555555555555555555555543
No 10
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=3e-15 Score=85.08 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh
Q 045511 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113 (209)
Q Consensus 64 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 113 (209)
||+.+|+++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.46 E-value=7.9e-12 Score=109.83 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 93 (209)
..|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+.+.|++++|.++++.+.
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444443321 1122333334444444444444444444433
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.44 E-value=1.5e-11 Score=108.05 Aligned_cols=198 Identities=12% Similarity=0.016 Sum_probs=149.2
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
.++ +.++.+++...+.++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 344 5677777777777666543 2345678888888888999999999998887753 34567888888888888999
Q ss_pred HHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHHhhC--
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-- 158 (209)
++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|..+. .|+..++..+...+.+.|++++|.+.+..+
T Consensus 686 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 686 ESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99998888888775 5566778888888888888888888888873 355567777888888888888888888887
Q ss_pred CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
..+.+...+..+...|...|+.++|.+.|+.+.+.. .+++..++.+.
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 811 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLA 811 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 334455677778888888888888888888887764 33455555443
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.3e-11 Score=96.96 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=134.0
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
.+..+|.++|.++|+-.+.++|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 355999999999999999999999999999988999999999999887443 3378899999999999999999999
Q ss_pred HHHHhCCChhhHHH----HHHhc----CCCcHhHHHHHHHHHHhCCChHH-HHHHHhhC-------CCCC----CHHhHH
Q 045511 109 HFYVTVKDIFSAHQ----IFNSV----VFPDVVTWTTIISGLSKCGFHKE-AIDMFCGI-------DVKP----NANTLV 168 (209)
Q Consensus 109 ~~~~~~g~~~~a~~----~~~~~----~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m-------~~~p----~~~t~~ 168 (209)
++..+.|.++.|.+ ++.+| ++|...+|.-+|.-+++.++..+ +..+..++ .++| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999999887655 45555 57999999999999999998754 44444444 3333 456788
Q ss_pred HHHHHhccccchhHHHHHHHHHHHh
Q 045511 169 SVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+.+..|.+..|.+.|+++...+...
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 8899999999999999998766443
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.9e-10 Score=89.56 Aligned_cols=112 Identities=11% Similarity=0.118 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc----CCCcHhHHHHHHH
Q 045511 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVTWTTIIS 140 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~ 140 (209)
+..||++||.++|+--..+.|.+++++-.....+.+..++|.+|.+-.-.-+ .++..+| ..||..|||++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4455666666666666666666666666655556666666666654333322 4444444 3466666666666
Q ss_pred HHHhCCChHHH----HHHHhhC---CCCCCHHhHHHHHHHhccccch
Q 045511 141 GLSKCGFHKEA----IDMFCGI---DVKPNANTLVSVLSACSSLGSR 180 (209)
Q Consensus 141 ~~~~~g~~~~a----~~~~~~m---~~~p~~~t~~~li~~~~~~g~~ 180 (209)
+.++.|+++.| .+++.+| |+.|+..+|..+|+.+++.++.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 66666665543 3455555 6666666666666666666655
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=1.4e-10 Score=98.13 Aligned_cols=182 Identities=11% Similarity=0.019 Sum_probs=124.2
Q ss_pred hHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCC------------------------CCCHHHHHHH
Q 045511 17 QLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS------------------------SYNHYTFTQA 72 (209)
Q Consensus 17 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~------------------------~p~~~t~~~l 72 (209)
-|...++..+..|+..+|..+|.-||..|+.+.|- +|.-|+-..+ .|...||..+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45666677788899999999999999999999998 8777754333 4677788888
Q ss_pred HHHHhccccHHHHHHH---HHHHHHh----cc-----------------CccHhHHHHHHHHHHhCCChhhHHHHHH---
Q 045511 73 LKACSLAHAHQKGLEI---HAHVIKY----GH-----------------LHDIFIQNSLLHFYVTVKDIFSAHQIFN--- 125 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~---~~~m~~~----g~-----------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~--- 125 (209)
+.+|...||+...+.+ +..+..+ |+ -||.. +.+.-....|.++.+.+++.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 8888888876542222 2122111 11 11111 11111122222222222221
Q ss_pred -------------hc------------------CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCHHhHHHHH
Q 045511 126 -------------SV------------------VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVL 171 (209)
Q Consensus 126 -------------~~------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~~t~~~li 171 (209)
.+ ..++..+|.+++++-..+|+.+.|..++.+| |+..+.+-|..+|
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 11 1377888888888888888888888888888 8888888888888
Q ss_pred HHhccccchhHHHHHHHHHHHhccCCCchhHhHh
Q 045511 172 SACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 205 (209)
-+ .++...++.++..|...|+.|+..|+..-
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 77 77888888888888888888888887643
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.18 E-value=2.2e-10 Score=88.68 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=88.8
Q ss_pred hhccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCHHHHHHHHHHHhccccHHH
Q 045511 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~ 84 (209)
+..+++++|.+.+....+.. ++...+..++..+.+.++++++.++++...... .+++...|..+-..+.+.|+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 35566666666665554432 455666677777777777777777777766433 34566667777777777777777
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CC
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DV 160 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~ 160 (209)
|.+.++...+.. +-|....+.++..+...|+.+++.+++... ...|...+..+-.+|...|+.++|...|.+. ..
T Consensus 165 A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 165 ALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 877777777654 334667777777777777777766666555 2244556677777777777888887777777 44
Q ss_pred CC-CHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 161 KP-NANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 161 ~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
.| |..+...+..++...|+.++|.++....
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp STT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 44 5566677777777777777777776654
No 17
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=3.5e-11 Score=62.16 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=23.3
Q ss_pred ccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 96 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=5.8e-09 Score=77.38 Aligned_cols=160 Identities=12% Similarity=0.026 Sum_probs=78.9
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 444445555555555555555555554432 1223444555555555555555555555555443 22334455555555
Q ss_pred HhCCChhhHHHHHHhcCC-----CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHH
Q 045511 112 VTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~ 184 (209)
...|++++|.+.+++..+ .....+..+-..+...|++++|...|.+. ...|+ ...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555421 11223444445555555555555555555 32332 234444555555555555555
Q ss_pred HHHHHHHHh
Q 045511 185 AIHAHSLRN 193 (209)
Q Consensus 185 ~~~~~~~~~ 193 (209)
+.++...+.
T Consensus 190 ~~~~~~~~~ 198 (234)
T TIGR02521 190 AYLERYQQT 198 (234)
T ss_pred HHHHHHHHh
Confidence 555554443
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.6e-08 Score=75.04 Aligned_cols=184 Identities=9% Similarity=-0.036 Sum_probs=147.7
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
..++.+++...+.+..+.. +.+...+..+...+...|++++|.+.+++..+.+. .+...+..+...+...|++++|.
T Consensus 43 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred HCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHH
Confidence 6778888888888776653 22457888888999999999999999999987642 35567788888899999999999
Q ss_pred HHHHHHHHhcc-CccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCC
Q 045511 87 EIHAHVIKYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVK 161 (209)
Q Consensus 87 ~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~ 161 (209)
+.++...+... ......+..+-..+...|++++|.+.+++... .+...+..+...+...|++++|.+.+++. ...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 120 QQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987542 23455777888899999999999999988732 34667888899999999999999999998 433
Q ss_pred C-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 P-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
| +...+..+...+...|+.+.|..+.+.+.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 200 NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4 4566777788888999999999988776543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.12 E-value=1e-08 Score=88.18 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=82.8
Q ss_pred HHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhh-
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS- 119 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~- 119 (209)
+.+.|++++|...++.+.+..-.++...+..+..++.+.|++++|...++...+.. +.+...+..+-..|...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence 44555555555555555443322333333444455555666666666666655543 2334555556666666666654
Q ss_pred ---HHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 120 ---AHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 120 ---a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
|...|++.. .| +...+..+...+...|++++|...+++. ...|+. .....+-..+...|++++|.+.+..+.
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555542 12 3445666666666666666666666666 444443 334445555566666666666666555
Q ss_pred Hh
Q 045511 192 RN 193 (209)
Q Consensus 192 ~~ 193 (209)
+.
T Consensus 346 ~~ 347 (656)
T PRK15174 346 RE 347 (656)
T ss_pred Hh
Confidence 43
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.11 E-value=2.4e-10 Score=88.46 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=55.2
Q ss_pred cCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cCccHhHHHHHHHHHHhCCChhhHH
Q 045511 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
..+++++|.++++...+.. ++...+..++..+.+.++++.+.++++...+.. .+.+...|..+-..+.+.|+.++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444444443332221 333444444555555555555555555544322 2334445555555555555555555
Q ss_pred HHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 122 QIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 122 ~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
+++++.. .| |....+.++..+...|+.+++.+++... ....|...+..+-.++...|+.++|...+....+
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 5555541 23 2444555555555555555555555444 2223333444555555555555555555555444
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.10 E-value=1.3e-08 Score=87.61 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=115.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|...+.++.+.. +.+...+..+...+.+.|+.++|...++.+......+ ...+.. +..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHH
Confidence 4555566665555555442 1233566666666777777777777776665433211 122222 23356667777777
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHH----HHHHHhhC-
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKE----AIDMFCGI- 158 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----a~~~~~~m- 158 (209)
..++.+.+....++...+..+...+.+.|+.++|.+.+++..+ .+...+..+-..+...|++++ |...|.+.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 7777666554333344445556677777788888777777632 345666777777888888775 67777777
Q ss_pred CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 159 DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 159 ~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
...|+. ..+..+...+...|++++|...++...+.
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666654 46777778888888888888888877665
No 23
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.06 E-value=1.2e-09 Score=92.58 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=108.1
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc------------------------CccHhHHHHH
Q 045511 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH------------------------LHDIFIQNSL 107 (209)
Q Consensus 52 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------------------------~~~~~~~~~l 107 (209)
.++-.+...|+.||.+||..+|..||..|+.+.|. +|..|.-+.. .|.+-||++|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 46778999999999999999999999999999998 8887764432 2567799999
Q ss_pred HHHHHhCCChhh---HHHHHHhcC-------------------------CCcHhHHHHHHHHHHhCCChHHHHHHH----
Q 045511 108 LHFYVTVKDIFS---AHQIFNSVV-------------------------FPDVVTWTTIISGLSKCGFHKEAIDMF---- 155 (209)
Q Consensus 108 l~~~~~~g~~~~---a~~~~~~~~-------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~---- 155 (209)
..+|...||+.. .++.+..+. -||.. +.+.-....|.|+.+.++.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999998654 333222210 02211 1122222223333332222
Q ss_pred ------------hhC------------------CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHh
Q 045511 156 ------------CGI------------------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 156 ------------~~m------------------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 205 (209)
+.+ + .|+..+|..++++..-+|+.+.|..++..|++.|+..+.+-|-.|
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 222 3 599999999999999999999999999999999999988866655
Q ss_pred h
Q 045511 206 L 206 (209)
Q Consensus 206 i 206 (209)
+
T Consensus 246 l 246 (1088)
T KOG4318|consen 246 L 246 (1088)
T ss_pred h
Confidence 4
No 24
>PF12854 PPR_1: PPR repeat
Probab=99.05 E-value=2.8e-10 Score=58.73 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 045511 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92 (209)
Q Consensus 60 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 92 (209)
.|+.||..||+++|.++|+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777777777777777777777777777776
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.01 E-value=5.2e-08 Score=83.45 Aligned_cols=159 Identities=9% Similarity=-0.036 Sum_probs=136.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
..|+.+-..+...|++++|...|++..+. .|+ ...|..+-..+...|++++|...|+...+.. +.+..+|..+-..
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 67888888888999999999999998875 354 5678888888999999999999999998764 4557889999999
Q ss_pred HHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHH
Q 045511 111 YVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKA 185 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~ 185 (209)
+...|++++|.+.|++.. .| +...+..+-..+.+.|++++|+..|++. ...|+ ...++.+-..+...|++++|..
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999883 23 5677788889999999999999999998 55665 5678888899999999999999
Q ss_pred HHHHHHHh
Q 045511 186 IHAHSLRN 193 (209)
Q Consensus 186 ~~~~~~~~ 193 (209)
.|+...+.
T Consensus 489 ~~~~Al~l 496 (615)
T TIGR00990 489 KFDTAIEL 496 (615)
T ss_pred HHHHHHhc
Confidence 99987665
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.99 E-value=7.4e-08 Score=82.53 Aligned_cols=147 Identities=15% Similarity=0.041 Sum_probs=84.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC-cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ-PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
..++.++|...+.++.+.. |+ ...|..+-..+...|++++|...|++..+.. +-+...|..+-..+...|++++|
T Consensus 343 ~~g~~~eA~~~~~kal~l~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD---PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455555555555544432 33 2455566666666667777777666665542 22345566666666666666666
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
...|+...+.. +.+...+..+-..+.+.|++++|...|++.. .| +...|+.+-..+...|++++|...|++.
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666665543 2334555556666666666666666666552 12 3455556666666666666666666654
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.89 E-value=2e-07 Score=83.01 Aligned_cols=157 Identities=6% Similarity=-0.047 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 113 (209)
+..+...+.+.|+.++|...+++..+.+ +++...+..+.......|++++|...++...+.. |+...|..+-..+.+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3334444445555555555555554432 1111222222222333355555555555555432 345555555566666
Q ss_pred CCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHH
Q 045511 114 VKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 114 ~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
.|+.++|.+.+++.. .| +...++.+-..+...|++++|+..|.+. ...|+. ..+..+-.++...|++++|+..++
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666665552 22 3445555555566666666666666555 444433 345555555566666666666665
Q ss_pred HHHHh
Q 045511 189 HSLRN 193 (209)
Q Consensus 189 ~~~~~ 193 (209)
...+.
T Consensus 702 ~Al~l 706 (987)
T PRK09782 702 LVIDD 706 (987)
T ss_pred HHHhc
Confidence 55433
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.88 E-value=3.6e-07 Score=81.41 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=137.8
Q ss_pred chhccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHH
Q 045511 5 GLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 84 (209)
++..+++.+|...+.+..... |+....-.+...+.+.|++++|...|+++... +|+...+..+..++.+.|++++
T Consensus 486 ~l~~~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 486 CYRDTLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred HHHhCCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHH
Confidence 333356666776666665543 55433223344446899999999999998654 4555556667778889999999
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCC
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVK 161 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~ 161 (209)
|.+.++...+.. +.+...+..+...+.+.|++++|...+++.. .|+...|..+-..+.+.|++++|...|.+. ...
T Consensus 561 A~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 561 RDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999998765 3333344444445556699999999999884 477888999999999999999999999999 777
Q ss_pred CCHH-hHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 PNAN-TLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|+.. .+..+-.++...|+.++|.+.+....+.
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8664 5666777888999999999999988775
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.85 E-value=3.8e-07 Score=80.04 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=141.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC---CHHHHHHHHHHHhccccH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY---NHYTFTQALKACSLAHAH 82 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~ 82 (209)
..++.++|...+.++.+.....|+. ..+ +-..+...|++++|...|++..+..-.. .......+..++...|++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 5566677777777776653322332 222 4668889999999999999987643111 134566777788999999
Q ss_pred HHHHHHHHHHHHhcc-----------Ccc---HhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC
Q 045511 83 QKGLEIHAHVIKYGH-----------LHD---IFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC 145 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~-----------~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 145 (209)
++|.++++.+.+... .|+ ...+..+...+...|+.++|+++++++. ..+...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999987631 123 2355677788999999999999999983 23577888999999999
Q ss_pred CChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 146 GFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 146 g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|++++|++.+++. ...||. ..+......+...|++++|+.+++.+.+.
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999 778875 45556666788999999999999998876
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=6.5e-07 Score=75.80 Aligned_cols=174 Identities=11% Similarity=-0.063 Sum_probs=124.1
Q ss_pred CcchHhHHHHHHHHhhCC-CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 045511 12 TLSFKQLNQIHAQIIKIP-QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA 90 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 90 (209)
.+|...+.++.+. .| +...+..+-..+...|++++|...|++..+.+ +.+...+..+-..+...|++++|...++
T Consensus 321 ~~A~~~~~~Al~l---dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 321 IKAKEHAIKATEL---DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444433 34 44777777778889999999999999998865 2345677778888999999999999999
Q ss_pred HHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHH
Q 045511 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 91 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
...+.... +...+..+...+...|++++|...+.+.. .| +...+..+-..+...|+.++|...+.++ ...|+..
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 99876522 22333344445667899999999998763 24 3455677778888999999999999998 5566654
Q ss_pred h-HHHHHHHhccccchhHHHHHHHHHHH
Q 045511 166 T-LVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 166 t-~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
+ .+.+...+...|+ ++...++.+.+
T Consensus 476 ~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 476 IAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 4 4445556677774 67776666544
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.78 E-value=3.2e-07 Score=74.58 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 132 VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
.....++-..+.+.|+|++|.+.|... ...|+..+|..+-..+.+.|+.++|.+.++.-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334555566666777777777777766 666777777777777777777777776666543
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.74 E-value=9.5e-07 Score=80.86 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=128.7
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCC-CCHHHHHH------------HH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-YNHYTFTQ------------AL 73 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~------------ll 73 (209)
..++.++|...+.++.+..+ .+...+..+-..+.+.|++++|...|++..+..-. ++...+.. .-
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 66777888888877777531 25577788888888888888888888888764421 11111211 12
Q ss_pred HHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--Cc-HhHHH--------------
Q 045511 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PD-VVTWT-------------- 136 (209)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~-------------- 136 (209)
..+.+.|++++|.+.|+...+.. +.+...+..+-..+...|++++|++.|++..+ |+ ...+.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 34567788888888888887764 34556777778888888888888888877631 22 22222
Q ss_pred ----------------------------HHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHH
Q 045511 137 ----------------------------TIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 137 ----------------------------~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~ 186 (209)
.+...+...|++++|.+.|++. ...|+. ..+..+...+.+.|++++|...
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2233455678999999999888 667754 4566777888899999999999
Q ss_pred HHHHHHh
Q 045511 187 HAHSLRN 193 (209)
Q Consensus 187 ~~~~~~~ 193 (209)
++.+.+.
T Consensus 518 l~~al~~ 524 (1157)
T PRK11447 518 MRRLAQQ 524 (1157)
T ss_pred HHHHHHc
Confidence 9988764
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.73 E-value=1.4e-06 Score=79.69 Aligned_cols=185 Identities=14% Similarity=0.009 Sum_probs=127.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
..++.++|.+.+.++.+..+. +...+..+...+.+.|++++|...+++..+..- -+...+..+...+...++.++|.
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHH
Confidence 567777888878777765422 345677788889999999999999999876431 12222222222333444444444
Q ss_pred HHHHHHHHh---------------------------------------ccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 87 EIHAHVIKY---------------------------------------GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 87 ~~~~~m~~~---------------------------------------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..++.+... ..+.+...+..+-..+.+.|+.++|.+.|++.
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444332111 12345556677888888889999999998887
Q ss_pred C--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 128 V--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 128 ~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
. .| +...+..+...|...|++++|.+.++.. ...|+. .+...+-.++...|++++|.++++.+.+..
T Consensus 630 l~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 630 LTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 3 23 5778888889999999999999999888 666654 445566677778899999999999887653
No 34
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.73 E-value=1.2e-08 Score=52.79 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=24.6
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN 65 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 65 (209)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.73 E-value=4.8e-07 Score=73.80 Aligned_cols=118 Identities=13% Similarity=0.024 Sum_probs=51.9
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHH---hccccHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC---SLAHAHQK 84 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~ 84 (209)
.++.+.|...+..+.+..+. +..+...+...+.+.|++++|.+++..+.+.+..++...-..-..+. ...+..+.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~--~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPR--HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444311 22455555666666666666666666666554322111111111111 11111111
Q ss_pred HHHHHHHHHHhcc---CccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 85 GLEIHAHVIKYGH---LHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 85 a~~~~~~m~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..+.+..+.+... +.+...+-.+...+...|+.++|.+++++.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1122222222211 124555556666666667777776666554
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=98.70 E-value=3e-06 Score=71.82 Aligned_cols=147 Identities=11% Similarity=-0.091 Sum_probs=114.0
Q ss_pred CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHH
Q 045511 45 STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124 (209)
Q Consensus 45 g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 124 (209)
++.++|...+++..+.+ +-+...+..+-..+...|++++|...|+...+.. +.+...+..+-..+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45789999999988864 2355677777778889999999999999998876 445678888899999999999999999
Q ss_pred HhcC--CCcH-hHHHHHHHHHHhCCChHHHHHHHhhC-C-CCCCHH-hHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 125 NSVV--FPDV-VTWTTIISGLSKCGFHKEAIDMFCGI-D-VKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 125 ~~~~--~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m-~-~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
++.. .|+. ..+..+...+...|++++|...+.+. . ..|+.. .+..+-.++...|+.++|.+.+..+...
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9983 3432 23334455577789999999999887 3 346554 4566667778999999999999876544
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.68 E-value=2.5e-06 Score=74.96 Aligned_cols=184 Identities=10% Similarity=-0.022 Sum_probs=132.9
Q ss_pred CcchHhHHHHHHHHhhCCCcc-cHH----HHHHHHHcCCCccchHHHHHHhhhCCCC-CCHHHHHHHHHHHhccccHHHH
Q 045511 12 TLSFKQLNQIHAQIIKIPQPH-ILN----TLLKLLTQSSTPQNAIPLYNKMLNCPSS-YNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~~p~~~-~~~----~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a 85 (209)
+.|.+.++.+.+.....|+.. .+. ..+..+...|+.++|...|+.+.+.+-+ |+. .-..+-.++...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 345555556655544444432 111 1134556779999999999999987632 432 222246689999999999
Q ss_pred HHHHHHHHHhccCc---cHhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-------------c---HhHHHHHHHHHHh
Q 045511 86 LEIHAHVIKYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-------------D---VVTWTTIISGLSK 144 (209)
Q Consensus 86 ~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-------------~---~~~~~~li~~~~~ 144 (209)
...|+.+.+..... .......+..++...|++++|.++++.+.+ | + ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999987654211 134567778889999999999999998832 2 2 2345667788899
Q ss_pred CCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHhccCCC
Q 045511 145 CGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198 (209)
Q Consensus 145 ~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 198 (209)
.|++++|++.++++ ...|+. ..+..+...+...|++++|++.++...+. .|+
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd 425 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPR 425 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC
Confidence 99999999999999 555644 56788888889999999999999988775 355
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.68 E-value=4.9e-06 Score=65.01 Aligned_cols=162 Identities=10% Similarity=-0.100 Sum_probs=86.8
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..|..+-..+.+.|+.++|...|++..+.. +.+...|..+-..+...|+++.|.+.|+...+.. +-+..+|..+-..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555555566666666666666665543 1234556666666666666666666666665533 22344555555666
Q ss_pred HhCCChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCC------------------------
Q 045511 112 VTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPN------------------------ 163 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~------------------------ 163 (209)
...|++++|.+.|+... .|+..........+...+++++|...|.+. ...|+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~ 222 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLK 222 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHH
Confidence 66666666666665542 222111111111122334455555555332 11111
Q ss_pred -------------HHhHHHHHHHhccccchhHHHHHHHHHHHhcc
Q 045511 164 -------------ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195 (209)
Q Consensus 164 -------------~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 195 (209)
..+|.-+-..+...|++++|...|+...+.+.
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 12455556666777888888888887776653
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.67 E-value=2e-06 Score=75.36 Aligned_cols=186 Identities=10% Similarity=0.054 Sum_probs=140.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCC-----CCCCHHHHHHHHHHHhcccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP-----SSYNHYTFTQALKACSLAHA 81 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~~~ 81 (209)
++++..++.+.++.+.......|+. +--.+.++|...+++++|..+|+...... ..++......|..++...++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y-~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDY-ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 5555556666666665554444544 55678899999999999999999986643 23344556889999999999
Q ss_pred HHHHHHHHHHHHHhcc-----------Ccc--H-hHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHh
Q 045511 82 HQKGLEIHAHVIKYGH-----------LHD--I-FIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSK 144 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~-----------~~~--~-~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 144 (209)
+++|..+++.+.+... .|| - ..+..+...+...|+..+|++.++++. .-|......+-+.+..
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999987321 122 1 244566777889999999999999983 2477888899999999
Q ss_pred CCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 145 CGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 145 ~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.|.+.+|++.++.. .+.|+. .+......++...|++.+|+.+.+.+.+.
T Consensus 463 Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 463 RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999777 777765 56677788888899999998888666444
No 40
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.66 E-value=2.7e-08 Score=51.28 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=16.7
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCC
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 64 (209)
+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 41
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.65 E-value=3.4e-08 Score=51.08 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=25.6
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHHhccCCCc
Q 045511 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 166 t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
||+++|++|++.|++++|.++|.+|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6777777777777777777777777777777763
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.65 E-value=4.6e-07 Score=74.96 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
.++..+-..|-..|.+|.|.+.|++..+. .|+- ..|+.|-.++-..|++.+|.+.+...+.-. +.-..+.+.|-..
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni 363 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNI 363 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34444444444445555555555544442 2221 345555555555555555555555544432 1223344555555
Q ss_pred HHhCCChhhHHHHHHhcC--CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHH
Q 045511 111 YVTVKDIFSAHQIFNSVV--FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKA 185 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~ 185 (209)
|...|.+++|.++|...- .|. ....|.|-..|-+.|++++|+.-|++. .++|+. ..|+-+-+.|-..|+.+.|.+
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 555555555555554431 122 223444555555555555555555544 444443 234444444444444444433
Q ss_pred H
Q 045511 186 I 186 (209)
Q Consensus 186 ~ 186 (209)
-
T Consensus 444 ~ 444 (966)
T KOG4626|consen 444 C 444 (966)
T ss_pred H
Confidence 3
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.64 E-value=4.7e-06 Score=65.48 Aligned_cols=191 Identities=12% Similarity=0.082 Sum_probs=148.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC-------HHHHHHHHHHHhcc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-------HYTFTQALKACSLA 79 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-------~~t~~~ll~~~~~~ 79 (209)
..++...|...+.++.+..+ .++.........|.+.|++..+..++..|.+.|+--| ..+|..++.-....
T Consensus 165 ~~~d~~aA~~~v~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred hCCCchhHHHHHHHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 56667777777888777643 3557888999999999999999999999999986443 34577777777777
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--------------------------------
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-------------------------------- 127 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------------------------------- 127 (209)
+..+.-...++...++ .+.++..-.+++.-+...|+.++|.++..+.
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHH
Confidence 7666666666666544 3556667777888888888888888877443
Q ss_pred --CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCch
Q 045511 128 --VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200 (209)
Q Consensus 128 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 200 (209)
..-+.-.+.+|=..|.+++.|.+|.+.|+.- ..+|+..+|+.+-.++.+.|+.++|.++.++....-..|+..
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 0123456778888899999999999999987 999999999999999999999999999999877665555543
No 44
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.62 E-value=4e-07 Score=59.28 Aligned_cols=80 Identities=10% Similarity=-0.011 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCCC-CCCHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHhccCccHhHHH
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAH--------AHQKGLEIHAHVIKYGHLHDIFIQN 105 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~~~ 105 (209)
..-|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++.....+++.|+..+++|+..+||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4567777788999999999999999999 999999999999987763 3456778899999999999999999
Q ss_pred HHHHHHHhC
Q 045511 106 SLLHFYVTV 114 (209)
Q Consensus 106 ~ll~~~~~~ 114 (209)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988764
No 45
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.59 E-value=7e-08 Score=49.66 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.1
Q ss_pred HhHHHHHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 165 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
.||+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.56 E-value=3.7e-06 Score=68.43 Aligned_cols=193 Identities=7% Similarity=-0.008 Sum_probs=146.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-------HHHHHHHHHHhcc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-------YTFTQALKACSLA 79 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~ 79 (209)
..++.+.|...+.++.+..+..|...-.- ...+.+.|++++|..++..+.+.+..++. .+|..++......
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll--~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLA--EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999988876666664433 24557779999999999999998765332 2445555555555
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--CcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
.+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++.-+ ++.. -.++.+....++.+++....+.
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHH
Confidence 6667777777776544 356788999999999999999999999988733 3432 2345666677999999999988
Q ss_pred C-CCCCCHH-hHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 158 I-DVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 158 m-~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
. ...|+.. ....+-+.|.+.|++++|.+.|+...+. .|+...+..|-
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 8 6677665 5778888999999999999999988876 57776655443
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.54 E-value=8.3e-06 Score=71.62 Aligned_cols=172 Identities=10% Similarity=0.051 Sum_probs=121.1
Q ss_pred hhccCCCcchHhHHHHHHHHhhCCCc--ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC-CHHHHHHH--HHHHhccc
Q 045511 6 LKSLKPTLSFKQLNQIHAQIIKIPQP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQA--LKACSLAH 80 (209)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~l--l~~~~~~~ 80 (209)
++.|+...|...+.++.+.. |+. ..+ .++..+...|+.++|...+++.. .| +...+..+ ...+...|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 46777777777777776654 443 233 77888888899999998888887 23 22333333 45777788
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--CcHhHHHHHHHHHHh--CCChHHHHHHHh
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSK--CGFHKEAIDMFC 156 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~--~g~~~~a~~~~~ 156 (209)
+++.|.++|+.+.+.. +-++..+..+...+...++.++|.+.+.+... |+...+ +..++.. .++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~--l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY--MTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--HHHHHHHHhcchHHHHHHHHH
Confidence 9999999999888775 34466667778888888999999999888854 554455 3334444 455555888888
Q ss_pred hC-CCCCC-HHhHHHHHHHhccccchhHHHHHHH
Q 045511 157 GI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 157 ~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
++ ...|+ ...+..+..+..+.|-...|.++..
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 88 66675 4566777888888888877776644
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=5.4e-06 Score=63.72 Aligned_cols=190 Identities=12% Similarity=0.146 Sum_probs=117.1
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCc------ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHH
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQP------HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK 74 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 74 (209)
|-+.+ ++|..++|.+..+.+.+ .||. .+.-.|-.-|..+|-+|+|.++|..+.++|- .-.....-++.
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~----spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~ 149 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLE----SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLN 149 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHH
Confidence 34455 56666666554444433 3544 3444555556677777777777777777653 23345666777
Q ss_pred HHhccccHHHHHHHHHHHHHhccCccHh----HHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHH-HHHHhCCC
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIF----IQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTII-SGLSKCGF 147 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li-~~~~~~g~ 147 (209)
.|-...++++|.++-+.+.+.+-.+..+ -|--|-..+....+++.|..++.+.- .|+.+=-++++ +.....|+
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence 7777777777777777666655333321 23334444445567777777776652 23322223333 56667788
Q ss_pred hHHHHHHHhhC-CCCCCH--HhHHHHHHHhccccchhHHHHHHHHHHHhccC
Q 045511 148 HKEAIDMFCGI-DVKPNA--NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196 (209)
Q Consensus 148 ~~~a~~~~~~m-~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 196 (209)
++.|.+.+... ...|+- .+...+..+|...|+.++....+..+.+....
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 88888888877 555554 45677788888888888888887776665433
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.45 E-value=2e-05 Score=65.33 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=138.8
Q ss_pred hccCCCcchHhHHHHHHHHh----h-CCCc-ccHHHHHHHHHcCCCccchHHHHHHhhh-----CC-CCCCH-HHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQII----K-IPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLN-----CP-SSYNH-YTFTQAL 73 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~----~-~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~~-~t~~~ll 73 (209)
..++.++|...+..+...+. . .|.+ .+++.|-..|.+.|++++|...+++..+ .| ..|.+ .-++.+.
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 56777888877777777653 1 1222 7788888899999999999888877643 22 22333 3366677
Q ss_pred HHHhccccHHHHHHHHHHHHHh---ccCcc----HhHHHHHHHHHHhCCChhhHHHHHHhcCC----------C-cHhHH
Q 045511 74 KACSLAHAHQKGLEIHAHVIKY---GHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVF----------P-DVVTW 135 (209)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~---g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~ 135 (209)
..|+..+++++|..++....+. -+.++ ..+++.|-..|.+.|++.+|++++.+..+ + ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 7788899999999988755433 12222 45899999999999999999999988721 1 13467
Q ss_pred HHHHHHHHhCCChHHHHHHHhhC--------CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 136 TTIISGLSKCGFHKEAIDMFCGI--------DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m--------~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
+-|-..|.+.+++++|.++|.+- .-.|+. .+|..|...|...|+++.|.++...+.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 78888999999999999888776 223444 689999999999999999999988664
No 50
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.44 E-value=6.8e-07 Score=69.37 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=108.2
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh---HHHHHHHHHHhCCC
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF---IQNSLLHFYVTVKD 116 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~g~ 116 (209)
.+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+.. .|.. ...+.+..+.....
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchh
Confidence 345678888888877542 466778889999999999999999999998754 3432 33444555555567
Q ss_pred hhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccch-hHHHHHHHHH
Q 045511 117 IFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSR-KLGKAIHAHS 190 (209)
Q Consensus 117 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~-~~a~~~~~~~ 190 (209)
+.+|.-+|+++.+ ++..+.|.+..++...|++++|.+++.+. ...| |..|..-+|..+...|+. +.+.+.++++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999843 57788899999999999999999999887 4444 445777778888888877 7788888887
Q ss_pred HHh
Q 045511 191 LRN 193 (209)
Q Consensus 191 ~~~ 193 (209)
++.
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.42 E-value=4.4e-05 Score=62.41 Aligned_cols=154 Identities=13% Similarity=0.054 Sum_probs=91.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcc--cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPH--ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 84 (209)
+.|+.+.+.+.+.+..+.. |+.. .--.....+.+.|+.+.|...++.+.+.+ +-+...+..+...+...|++++
T Consensus 130 ~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 130 QRGDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHH
Confidence 4456666666666654433 4442 22224666667788888888888777764 2244567777777788888888
Q ss_pred HHHHHHHHHHhccCccHhH-------HHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHH
Q 045511 85 GLEIHAHVIKYGHLHDIFI-------QNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDM 154 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 154 (209)
+.+.+..+.+.+..++... +..++..-......+...+++...++ .+...+-.+...+...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 8888888877764332221 11112111222233444555555543 3667777777888888888888777
Q ss_pred HhhC-CCCCCH
Q 045511 155 FCGI-DVKPNA 164 (209)
Q Consensus 155 ~~~m-~~~p~~ 164 (209)
+.+. ...||.
T Consensus 286 l~~~l~~~pd~ 296 (409)
T TIGR00540 286 IFDGLKKLGDD 296 (409)
T ss_pred HHHHHhhCCCc
Confidence 7776 433443
No 52
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.41 E-value=3.8e-05 Score=64.06 Aligned_cols=180 Identities=13% Similarity=0.137 Sum_probs=143.7
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccccHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHAHQK 84 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 84 (209)
..|..+-|...+.+..+. .|+- ..||.|-.++-..|++.+|.+.|.+.... .|+. .+.+.+-..+...|.++.
T Consensus 298 eqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred ccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchH
Confidence 456666666666655553 4554 78999999999999999999999988874 3443 678888899999999999
Q ss_pred HHHHHHHHHHhccCcc-HhHHHHHHHHHHhCCChhhHHHHHHhcC--CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC-C
Q 045511 85 GLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI-D 159 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m-~ 159 (209)
|..+|....+- .|. ....|.|-..|-.+|++++|...+.+.. +|+ ..+|+.+=..|-..|+.+.|.+.+.+. .
T Consensus 373 A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 373 ATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999887764 344 4678999999999999999999998873 465 457888888888889999999988887 7
Q ss_pred CCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 160 VKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 160 ~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+.|.. ..++-+-..+-..|+..+|.+-++...+-
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 77766 47888888888999999999888876654
No 53
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.40 E-value=2.6e-07 Score=46.34 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=18.3
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCC
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCP 61 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g 61 (209)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=5.1e-06 Score=64.07 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=122.4
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHH-HHHHHHhcc
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT-QALKACSLA 79 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~ 79 (209)
+.+|+ +.|.+.+|.++++...+.+ |-+.+|-.|-..|.+-.++..|+.+|.+-.+. -|..+||- -+-..+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 45677 8999999998887776654 77788888999999999999999998876653 35555543 344555566
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
++.+++.++++...+.. +.++....++-.+|.-.++++.|++++.++- -.+...|+.+--+|...+++|.++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 77777888887777654 4556666667777777777777777777652 2344455555555555555554444333
Q ss_pred hC--------------------------------------CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 157 GI--------------------------------------DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 157 ~m--------------------------------------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+. .-.| +...++-+--.-.+.|+.+.|+.+++-..+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 33 1112 2345555555556677777777777665444
No 55
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.37 E-value=6.8e-06 Score=63.83 Aligned_cols=160 Identities=10% Similarity=0.075 Sum_probs=105.3
Q ss_pred CCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHH-HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHH
Q 045511 28 IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ-ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106 (209)
Q Consensus 28 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 106 (209)
.|.......+...+...++-+.+..-+++....+..++..++.. .-..+...|++++|.+++..- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 34555555554444433455556655555544444333333333 334556779999888887532 45667778
Q ss_pred HHHHHHhCCChhhHHHHHHhcCCC--cHh---HHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccc
Q 045511 107 LLHFYVTVKDIFSAHQIFNSVVFP--DVV---TWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGS 179 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~ 179 (209)
.+..|.+.++++.|.+.++.|.+. |.. ...+.+..+.-.+.+.+|..+|+++ ...++..+.+.+..+....|+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999653 322 2233334333345799999999999 667888999999999999999
Q ss_pred hhHHHHHHHHHHHh
Q 045511 180 RKLGKAIHAHSLRN 193 (209)
Q Consensus 180 ~~~a~~~~~~~~~~ 193 (209)
+++|++++....+.
T Consensus 217 ~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 217 YEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886543
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.37 E-value=0.00011 Score=54.04 Aligned_cols=182 Identities=12% Similarity=-0.012 Sum_probs=117.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
+.|....|.+.++++.+.- |+. .+|..+-..|-+.|..+.|.+-|++..+... -+....|..=..+|..|++++|
T Consensus 47 ~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCChHHH
Confidence 4555555555555555542 333 6777777777777777777777777766431 2335556666666777777777
Q ss_pred HHHHHHHHHhccCcc-HhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHHHHHHhCCChHHHHHHHhhC--C
Q 045511 86 LEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTIISGLSKCGFHKEAIDMFCGI--D 159 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m--~ 159 (209)
...|+......--+. ..+|.++.-+..+.|+.+.|+..|.+--+ | ...+.-.+..-....|++-.|...++.. +
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 777777766543333 35777777777777777777777776522 2 2345556666677777777777777777 4
Q ss_pred CCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 160 VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 160 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
..++..+.-.-|+--.+.||.+.+.+.=..+.+
T Consensus 203 ~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 203 GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 447777777777777777777766665444433
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=4.9e-05 Score=57.17 Aligned_cols=160 Identities=15% Similarity=0.063 Sum_probs=117.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH--hHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH----YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI--FIQN 105 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~ 105 (209)
..+-.+...+.+.|++++|...|++..... |+. ..+..+-.++.+.|++++|...++.+.+....... .++.
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 566677778889999999999999987743 332 46677778889999999999999999876532111 1344
Q ss_pred HHHHHHHhC--------CChhhHHHHHHhcC--CCcH-hHH-----------------HHHHHHHHhCCChHHHHHHHhh
Q 045511 106 SLLHFYVTV--------KDIFSAHQIFNSVV--FPDV-VTW-----------------TTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 106 ~ll~~~~~~--------g~~~~a~~~~~~~~--~~~~-~~~-----------------~~li~~~~~~g~~~~a~~~~~~ 157 (209)
.+-.++... |+.++|.+.|+.+. .|+. ..+ -.+-..+.+.|++++|...|.+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444455443 77889999998873 2332 111 1344667889999999999999
Q ss_pred C-CCCCC----HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 158 I-DVKPN----ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 158 m-~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
. ...|+ ...+..+..++.+.|++++|...++.+..+
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8 44333 467889999999999999999998887665
No 58
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.34 E-value=5.1e-07 Score=45.25 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=22.4
Q ss_pred HhHHHHHHHhccccchhHHHHHHHHHHHhcc
Q 045511 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNLN 195 (209)
Q Consensus 165 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 195 (209)
+||+++|++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777664
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.34 E-value=9.2e-05 Score=54.53 Aligned_cols=165 Identities=12% Similarity=-0.018 Sum_probs=136.8
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
.+.-.|--+|.+.|+...|..-+++..+..- -+..+|..+-..|-+.|..+.|.+-|+...+.. +-+-.+.|+.=-.+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 4566777889999999999999999999752 355889999999999999999999999888764 34556889999999
Q ss_pred HhCCChhhHHHHHHhcC-CCc----HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHH
Q 045511 112 VTVKDIFSAHQIFNSVV-FPD----VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~ 184 (209)
|..|++++|.+.|+... .|+ ..+|..+--+..+.|+.+.|...|++- ...|+. .+.-.+.+...+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999873 343 457888888888999999999999988 556654 57778888888999999999
Q ss_pred HHHHHHHHhccCCCc
Q 045511 185 AIHAHSLRNLNENNI 199 (209)
Q Consensus 185 ~~~~~~~~~~~~p~~ 199 (209)
.+++.....+- ++.
T Consensus 194 ~~~~~~~~~~~-~~A 207 (250)
T COG3063 194 LYLERYQQRGG-AQA 207 (250)
T ss_pred HHHHHHHhccc-ccH
Confidence 99988766654 443
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.29 E-value=0.00012 Score=58.35 Aligned_cols=182 Identities=9% Similarity=-0.028 Sum_probs=108.9
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHH---HHHHHhccccHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ---ALKACSLAHAHQ 83 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~ 83 (209)
.++++.+.+.+....+.....++. .........+...|++++|.+++++..+.. +.|...+.. ........+..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~ 97 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRD 97 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCch
Confidence 345566555566665555443333 112222334456788888988888877653 223333332 111112234444
Q ss_pred HHHHHHHHHHHhccCcc-HhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 84 KGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
.+.+.+.. ..+..|+ ......+-..+...|++++|.+.+++.. ..+...+..+-..+...|++++|...+.+.
T Consensus 98 ~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 98 HVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred hHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 45544443 1112233 3344555667788888999988888873 234566777788888889999998888877
Q ss_pred CCC---CCH--HhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 159 DVK---PNA--NTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 159 ~~~---p~~--~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
... |+. ..|..+...+...|++++|..+++....
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 332 232 2345667777888899999888887643
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.0001 Score=59.51 Aligned_cols=167 Identities=15% Similarity=0.240 Sum_probs=93.8
Q ss_pred cCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 045511 9 LKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88 (209)
Q Consensus 9 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 88 (209)
++.++|+..|..++.... -+..+.-.+.+.|-...+...|.+++.+.... ++-|...++.+-..|-+.|+-..|.+.
T Consensus 538 ~~ldeald~f~klh~il~--nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILL--NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred cCHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 334444444444443321 23344444444454555555555555333221 233445566666666666666666555
Q ss_pred HHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCCcHhHHHHHH-HHHHhCCChHHHHHHHhhC--CCCCC
Q 045511 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTWTTII-SGLSKCGFHKEAIDMFCGI--DVKPN 163 (209)
Q Consensus 89 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m--~~~p~ 163 (209)
+-+--+. ++-|..+..=|-..|....-.+.|..+|++. .+|+..-|-.|| +++.+.|++.+|+++|+.. .+.-|
T Consensus 615 ~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 615 HYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred hhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 4332221 3445555555556666666666677777654 567777777777 4445577888888888777 55556
Q ss_pred HHhHHHHHHHhccccc
Q 045511 164 ANTLVSVLSACSSLGS 179 (209)
Q Consensus 164 ~~t~~~li~~~~~~g~ 179 (209)
.....-+.+.|...|.
T Consensus 694 ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 694 LDCLKFLVRIAGDLGL 709 (840)
T ss_pred hHHHHHHHHHhccccc
Confidence 6666667777766653
No 62
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.23 E-value=1e-05 Score=59.06 Aligned_cols=100 Identities=8% Similarity=0.065 Sum_probs=84.1
Q ss_pred HhhCCCcccHHHHHHHHHcC-----CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc----------------ccHH
Q 045511 25 IIKIPQPHILNTLLKLLTQS-----STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA----------------HAHQ 83 (209)
Q Consensus 25 ~~~~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~ 83 (209)
.....+..+|..+|..|.+. |.++-....++.|.+-|+.-|..+|+.||..+=+. .+.+
T Consensus 41 ~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 41 PGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred hhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 34557789999999999864 78888888999999999999999999999998653 3467
Q ss_pred HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh-hhHHHHH
Q 045511 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI-FSAHQIF 124 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~ 124 (209)
.+.+++++|...|+-||..++..|++.+++.+.. ....++.
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmm 162 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMM 162 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHH
Confidence 8999999999999999999999999999988764 3344443
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.20 E-value=0.0003 Score=54.98 Aligned_cols=146 Identities=13% Similarity=-0.030 Sum_probs=110.5
Q ss_pred CCccchHHHHHHhhhCC-CCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHH
Q 045511 45 STPQNAIPLYNKMLNCP-SSYN--HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 45 g~~~~a~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
++.+.+..-+.++.... +.|+ ...|...-..+.+.|+.+.|...|+...+.. +.+...|+.+-..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455666666666532 3333 2456666677889999999999999988865 446789999999999999999999
Q ss_pred HHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 122 QIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 122 ~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
..|+... .| +..+|..+-..+...|++++|.+.|+.. ...|+..........+...++.++|.+.+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999883 34 4678888888899999999999999998 777766433333333456778999999997654
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=2.2e-05 Score=65.43 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=94.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCC------------------------------CCCCHHHHHHH---HHHHhc
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCP------------------------------SSYNHYTFTQA---LKACSL 78 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------------------------------~~p~~~t~~~l---l~~~~~ 78 (209)
.+|.++=+.|.-.++.+.|++.|++..+.+ +..|...|+++ -..|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 666666666666666666666666654422 12344444443 334566
Q ss_pred cccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHH
Q 045511 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMF 155 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 155 (209)
.++++.|+..|+...+-+ +.+.+..-.+...+-+.|+.++|.+++++.. ..|...-=-....+...+++++|+..+
T Consensus 502 qek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred cchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 666666666666666544 3455566666666667777777777777652 223333223344455567777777777
Q ss_pred hhC-CCCCCHH-hHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 156 CGI-DVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 156 ~~m-~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
.++ .+.|+.. .|..+-+.|-+.|+.+.|..=|.-+.+
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 777 6666553 466666677777777776665554433
No 65
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.20 E-value=2.3e-05 Score=63.58 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=96.4
Q ss_pred hHHHHHHHHhhC--CCcccHHHHHHHHHcCCCccchHHHHHHhhhC--CCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 045511 17 QLNQIHAQIIKI--PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC--PSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92 (209)
Q Consensus 17 ~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 92 (209)
.+..+.+.+... -+......+++.+.+..+++++..++.+.+.. ....-..|.++++..|.+.|..+.+.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 344555555333 23367788888888888899999998888775 33333456679999999999999999999999
Q ss_pred HHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC----CCcHhHHHHHHHHHHh
Q 045511 93 IKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV----FPDVVTWTTIISGLSK 144 (209)
Q Consensus 93 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 144 (209)
...|+-||..++|.||+.+.+.|++..|.++...|. -.+..++.-.+.+|.+
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999998872 1333444444444433
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.19 E-value=0.00039 Score=55.01 Aligned_cols=168 Identities=7% Similarity=0.003 Sum_probs=137.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..|-.-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+.+.|.+-++...+.+ +.++........+|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHH
Confidence 34444445555679999999999999886445677777778888889999999999999998877 56788899999999
Q ss_pred HhCCChhhHHHHHHhcCC-----------CcHhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhcccc
Q 045511 112 VTVKDIFSAHQIFNSVVF-----------PDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLG 178 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g 178 (209)
.+.|++.+...++..+.+ .-..+|+.++.-....+..+.-...|+.. ..+-+...-.+++.-+.+.|
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG 277 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC
Confidence 999999999999999843 22468999999888888888777888887 56666777777888899999
Q ss_pred chhHHHHHHHHHHHhccCCCch
Q 045511 179 SRKLGKAIHAHSLRNLNENNII 200 (209)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~p~~~ 200 (209)
+.+.|.++..+-.+++..|+..
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred ChHHHHHHHHHHHHhccChhHH
Confidence 9999999999999998888743
No 67
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=8.3e-05 Score=59.99 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=97.2
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 112 (209)
.-..|+..+...++++.|..+|+++.+.. |++ ...+.+.+...++-.+|.+++.+..+.. +.+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556666667899999999999999876 554 4457777777777788888888887653 456777777888899
Q ss_pred hCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 113 TVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+.++.+.|.++..+.. .| +..+|..|..+|...|+++.|+-.++.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999884 35 4569999999999999999999998888
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=9.3e-05 Score=55.65 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=108.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCC-CCH-HHHHHHHHHHhcc----
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-YNH-YTFTQALKACSLA---- 79 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~-~t~~~ll~~~~~~---- 79 (209)
+.++.+.|...+.++....+..|.. .++..+-..+.+.|++++|...++++.+..-. |.. .++..+-..+...
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 7788888888888887765333322 46777888999999999999999999875421 111 1233333333332
Q ss_pred ----ccHHHHHHHHHHHHHhccCccHhHH-----------------HHHHHHHHhCCChhhHHHHHHhcCC--C----cH
Q 045511 80 ----HAHQKGLEIHAHVIKYGHLHDIFIQ-----------------NSLLHFYVTVKDIFSAHQIFNSVVF--P----DV 132 (209)
Q Consensus 80 ----~~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ll~~~~~~g~~~~a~~~~~~~~~--~----~~ 132 (209)
|+.+.|.+.|+.+.+.... +...+ -.+-..|.+.|++++|...+..... | ..
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATE 203 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchH
Confidence 7888999999999876422 11121 1345568889999999999988732 2 35
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 133 VTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 133 ~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
..+..+...+...|++++|...++.+
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68899999999999999999999887
No 69
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00034 Score=51.37 Aligned_cols=144 Identities=11% Similarity=0.046 Sum_probs=88.1
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
+..|...|+++.+....+.+... . . .+...++.+++...++...+.. +.|...|..|-..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34566677776665444332211 0 0 1112445555555566555554 55667777777777777888
Q ss_pred hhHHHHHHhcC---CCcHhHHHHHHHHH-HhCCC--hHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHH
Q 045511 118 FSAHQIFNSVV---FPDVVTWTTIISGL-SKCGF--HKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 118 ~~a~~~~~~~~---~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
++|...|++.. ..+...+..+-.++ ...|+ .++|.+++++. ...|+. ..+..+-..+.+.|++++|...|+.
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877777762 23555666666653 45565 47777777777 555533 5566666667777788888877777
Q ss_pred HHHhc
Q 045511 190 SLRNL 194 (209)
Q Consensus 190 ~~~~~ 194 (209)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 76653
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.15 E-value=7.2e-05 Score=62.09 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=123.6
Q ss_pred CCc-ccHHHHHHHHHcCCCccchHHHHHHhhhC-----C-CCCCHHHHH-HHHHHHhccccHHHHHHHHHHHHHhc---c
Q 045511 29 PQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNC-----P-SSYNHYTFT-QALKACSLAHAHQKGLEIHAHVIKYG---H 97 (209)
Q Consensus 29 p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~m~~~g---~ 97 (209)
|.. .+...+-..|...|+++.|..+++.-.+. | ..|.+.+.- .+-..|...+++++|..+|+.++.-- .
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 444 67777999999999999999999887653 2 124443332 35567888899999999999887542 1
Q ss_pred ---Ccc-HhHHHHHHHHHHhCCChhhHHHHHHhcC----------CCcH-hHHHHHHHHHHhCCChHHHHHHHhhC----
Q 045511 98 ---LHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVV----------FPDV-VTWTTIISGLSKCGFHKEAIDMFCGI---- 158 (209)
Q Consensus 98 ---~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m---- 158 (209)
.|. ..+++.|-..|.+.|++++|+..+++.. .|.+ ..++.+...++..+++++|..+++..
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 222 3578888889999999999988887651 2333 35677778888899999999998876
Q ss_pred --CCCC---CH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 159 --DVKP---NA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 159 --~~~p---~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
-..+ +. .+++.+-..|...|++++|++++....+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1222 22 58999999999999999999999966443
No 71
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=5.3e-05 Score=61.50 Aligned_cols=118 Identities=10% Similarity=0.081 Sum_probs=89.9
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh--ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC----CCcHh
Q 045511 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY--GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV----FPDVV 133 (209)
Q Consensus 60 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~ 133 (209)
.+.+.+...+.++++.+....+++.+..++-..... ....-..|..++|+.|.+.|..+.+..++..=. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667788888888888888888888887777755 233334555688888888888888888887653 38888
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC---CCCCCHHhHHHHHHHhccc
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 177 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~~t~~~li~~~~~~ 177 (209)
+||.+|..+.+.|++..|.++...| +...+..|+.-.+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888 5556667777667776654
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.0003 Score=60.98 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=103.3
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
++..+-.|-....+.|..++|..+++...+ +.||. .....+...+.+.+++++|....+..++.. +-+....+.+-
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 357777777888888888999988888887 44554 556677778888888888888888888765 44556777777
Q ss_pred HHHHhCCChhhHHHHHHhcCC--Cc-HhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHH
Q 045511 109 HFYVTVKDIFSAHQIFNSVVF--PD-VVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVS 169 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~ 169 (209)
.++...|+.++|..+|++... |+ ..++..+-.++-..|+.++|...|... ...|...-|+-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 788888899999888888843 33 567777778888888888888888887 44444444443
No 73
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00019 Score=53.77 Aligned_cols=116 Identities=9% Similarity=-0.030 Sum_probs=53.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCC
Q 045511 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCG 146 (209)
Q Consensus 70 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 146 (209)
+...+...+.|++..|...+.+...-. ++|...||.+--+|-+.|++++|..-|.+.. ..+....|.|--.|.-.|
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 334455555555555555554444332 4445555555555555555555555554431 123334444444444455
Q ss_pred ChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHH
Q 045511 147 FHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 147 ~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
+.+.|..++..- .-.-|...-.-+--+-...|+++.|+.+
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 555555555444 1111333333333344444555555444
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=1.6e-05 Score=61.37 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=101.8
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccH-HHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHIL-NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 81 (209)
+++ +--+|..|+..+.+-.+.+ |-.++| .-.-+.+-..++.++|.++|++..+.. +.++.....+-..|--.++
T Consensus 264 kvY~ridQP~~AL~~~~~gld~f---P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~ 339 (478)
T KOG1129|consen 264 KVYQRIDQPERALLVIGEGLDSF---PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNN 339 (478)
T ss_pred HHHHHhccHHHHHHHHhhhhhcC---CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCC
Confidence 344 4556666777777766665 333333 334444555677788888887776643 2355666666666677777
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc----------------------------------
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---------------------------------- 127 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---------------------------------- 127 (209)
++-|...+..+++.|+ .++..|+++--+|.-.+++|-+..-|.+.
T Consensus 340 PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred hHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 7888888888887773 45666666666666665555555444322
Q ss_pred -----CC-CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH
Q 045511 128 -----VF-PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 128 -----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
.. .+...+|.|--.-.+.|++++|..+++.. .+.|+.
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 11 23467888887788999999999999887 666765
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.00022 Score=55.13 Aligned_cols=196 Identities=12% Similarity=0.066 Sum_probs=103.1
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccH---HHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-H--HHHHHHHHHhcccc
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHIL---NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-Y--TFTQALKACSLAHA 81 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~--t~~~ll~~~~~~~~ 81 (209)
+-+++.|...|.++.+. |+.+| =+|=+.|-+.|..|+|+.+-+.+.++.-.+.. . ..--+-.=|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~-----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhc-----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 44556666666665552 22222 23344455556666666666666554211111 1 11122333455566
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcH--------hHHHHHHHHHHhCCChHHHHH
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV--------VTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~~ 153 (209)
++.|+++|..+.+.| ..-....--|+..|-...++++|.++-.+....+. ..|--+-..+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 666666666665543 23344555666666666666666666555432221 233334444445566777777
Q ss_pred HHhhC-CCCCCHHhHH-HHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 154 MFCGI-DVKPNANTLV-SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 154 ~~~~m-~~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
++.+. ...|+.+--+ .+-+.....|+++.|.+.++.+.+.+...-+.+-..|..+|
T Consensus 202 ~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 202 LLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 77665 4444433222 23344567788888888888777776554444555554443
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00016 Score=58.37 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=137.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
..|..+.|...+.+.... |. ..||+=+. +-..|++++|++.|-+++.- +.-++..+--+.+.|-...+.
T Consensus 502 ~ngd~dka~~~ykeal~n-----dasc~ealfniglt-~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN-----DASCTEALFNIGLT-AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred ecCcHHHHHHHHHHHHcC-----chHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 345555555555554331 22 22333222 44568888888888766542 224566777777788888888
Q ss_pred HHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
..|.+++.+... -++.|+.+.+-|-..|-+.|+-..|.+++-+-- ..|..+..=|-.-|....-+++++..|.+.
T Consensus 575 aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 575 AQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888755433 256788999999999999999999999876542 246666666777778888899999999998
Q ss_pred CCCCCHHhHHHHHHHhc-cccchhHHHHHHHHHHHhccCCCchhHhHhhh
Q 045511 159 DVKPNANTLVSVLSACS-SLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 207 (209)
-++|+..-|..+|..|. +.|++.+|.+++....+. +.-|.....-|++
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHH
Confidence 89999999999999986 689999999999887654 4445555444443
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.10 E-value=8.3e-05 Score=51.72 Aligned_cols=92 Identities=9% Similarity=-0.049 Sum_probs=45.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChH
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHK 149 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 149 (209)
-..+...|++++|...|+...+.. +.+...|..+-..+.+.|++++|...|+.... .+...+..+-.++...|+++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 344445555555555555544433 23444555555555555555555555555421 23444445555555555555
Q ss_pred HHHHHHhhC-CCCCCHH
Q 045511 150 EAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 150 ~a~~~~~~m-~~~p~~~ 165 (209)
+|...|+.. ...|+..
T Consensus 110 eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 110 LAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 555555554 4444443
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=0.00011 Score=50.12 Aligned_cols=99 Identities=9% Similarity=-0.032 Sum_probs=56.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC 145 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 145 (209)
...+...+.+.|++++|.+.|+...+.+ +.+...+..+-..+.+.|++++|..+++... ..+...+..+-..|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 4444455556666666666666665544 3355566666666666666666666665552 22344455555566666
Q ss_pred CChHHHHHHHhhC-CCCCCHHhHH
Q 045511 146 GFHKEAIDMFCGI-DVKPNANTLV 168 (209)
Q Consensus 146 g~~~~a~~~~~~m-~~~p~~~t~~ 168 (209)
|++++|...|++. ...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 99 GEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCHHHHHHHHHHHHHhccccchHH
Confidence 6666666666665 5555554443
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00045 Score=48.04 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=82.0
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHH--HHHHHhccccHHHHHHHHHHHHHhccCccH--hHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ--ALKACSLAHAHQKGLEIHAHVIKYGHLHDI--FIQNSL 107 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~l 107 (209)
..|..++..+ ..++.+.+...++.+.+..-.-....... +-..+...|++++|...|+...+....|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566666666 37777888888888877542111122222 335667778888888888888877633332 244556
Q ss_pred HHHHHhCCChhhHHHHHHhcCCC--cHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 108 LHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
-..+...|++++|...++....+ ....+...=..|.+.|++++|...|..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67778888888888888776432 334455555778888888888887754
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.05 E-value=0.00029 Score=63.61 Aligned_cols=176 Identities=9% Similarity=0.016 Sum_probs=95.6
Q ss_pred HHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhC-CCCCC---------------------------------
Q 045511 21 IHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNC-PSSYN--------------------------------- 65 (209)
Q Consensus 21 ~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~--------------------------------- 65 (209)
..+.....||. ..|-..|..+.+.++.+.|.++.++.... ++.-.
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 33333344666 77888888888888888888888777543 11111
Q ss_pred ---HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc----CC-CcHhHHHH
Q 045511 66 ---HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VF-PDVVTWTT 137 (209)
Q Consensus 66 ---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~-~~~~~~~~ 137 (209)
...|..|...|.+.+..++|-++++.|.++- .....+|......+.++++-+.|.+++.+. ++ .......-
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 1223444444444555555555555555442 244455555555555555555555555443 11 12223333
Q ss_pred HHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 138 IISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
.+..-.+.|+.+++..+|... .-+--...|+..|..-.++|+.+.++.+|+++...++.|
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 333344555555555555554 222233456666666666666666666666666665554
No 81
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.00011 Score=61.29 Aligned_cols=178 Identities=12% Similarity=0.028 Sum_probs=110.4
Q ss_pred hccCCCcchHhHHHHHHHHhh-CCCcccHHHHHHHHHcCCCcc-chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIK-IPQPHILNTLLKLLTQSSTPQ-NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~-~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 84 (209)
.-+..+.+.+.|..+++..+- ..+..+|++.+..+-+.-.+. .|..+.+.++ -...||.++=+.|.-+++.+.
T Consensus 365 El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~ 439 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDT 439 (638)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHH
Confidence 555666677777777776422 235599999998765532221 2333333332 345899999999999999999
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHH---HHHHHhCCChHHHHHHHhhC-CC
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTI---ISGLSKCGFHKEAIDMFCGI-DV 160 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m-~~ 160 (209)
|.+.|+...+-. +....+|+.+=+=+....++|.|++.|+.....|...||+. -..|.+.++++.|+--|+.. .+
T Consensus 440 Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 440 AIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred HHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 999998877643 22566777777777777777777777776655554444443 34455556666665555555 44
Q ss_pred CCCH-HhHHHHHHHhccccchhHHHHHHHHH
Q 045511 161 KPNA-NTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 161 ~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
.|.. +....+-..+.+.|+.++|.++++..
T Consensus 519 NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 519 NPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred CccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 4432 33444444444555555555555543
No 82
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.0003 Score=56.81 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHH
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLS 143 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 143 (209)
.-...+++.+...++++.|.++|+.+.+.. |+. .-.|.+.+...++-.+|.+++++... .+....+.-...|.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445667788888899999999999998875 554 44588888888999999999988732 35666666678899
Q ss_pred hCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHH
Q 045511 144 KCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
+.++++.|+.+.++. ...|+. .+|..|.++|...|+++.|...+.-+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999 888877 59999999999999999999888754
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.98 E-value=0.00028 Score=49.09 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=79.4
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhc
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACS 175 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~ 175 (209)
+..+..+-..+...|++++|...|+... ..+...|..+-..+.+.|++++|...|++. ...| +..++..+-.++.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3345567778899999999999999873 346788899999999999999999999999 6666 5577888888899
Q ss_pred cccchhHHHHHHHHHHHhc
Q 045511 176 SLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~ 194 (209)
..|+.++|...++...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887763
No 84
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00016 Score=56.09 Aligned_cols=141 Identities=15% Similarity=0.201 Sum_probs=108.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
.+|..+|..+-+.+..+.|..+|.+.++.+ +...+....+.|..+ ..++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468899999999999999999999998754 345555555555443 346677899999998876 57788899999999
Q ss_pred HHhCCChhhHHHHHHhcCC--C----cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHh
Q 045511 111 YVTVKDIFSAHQIFNSVVF--P----DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSAC 174 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~ 174 (209)
+.+.|+.+.|+.+|++... + ....|...+.-=.+.|+++.+..+.+++ ..-|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 9999999999999998843 2 3458999999999999999999999998 6666666666666655
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.96 E-value=0.00041 Score=50.97 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=94.9
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH-HHhCCC--hhhH
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF-YVTVKD--IFSA 120 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~--~~~a 120 (209)
.++.+++...++...+.+ +.|...|..+-..+...|+++.|...|+...+.. +-+...+..+-.+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666676666654 3577889999999999999999999999888865 4467777777776 467777 5999
Q ss_pred HHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhH
Q 045511 121 HQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTL 167 (209)
Q Consensus 121 ~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~ 167 (209)
.+++++.. .| +..++..+-..+...|++++|...|+++ ...|+..-+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 99999883 23 6778888889999999999999999999 445555444
No 86
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.94 E-value=9.2e-05 Score=54.19 Aligned_cols=30 Identities=7% Similarity=0.000 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHhccCCCchhHhHhhhc
Q 045511 179 SRKLGKAIHAHSLRNLNENNIILDNAVLDF 208 (209)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 208 (209)
+.+-|.++++.|..+|+.||..|+..|++.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~i 147 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNI 147 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 445667777777777777777777777654
No 87
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0011 Score=53.69 Aligned_cols=178 Identities=7% Similarity=0.010 Sum_probs=122.7
Q ss_pred ccCCCcchHhHHHHHHHHhhCCC-cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQ-PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
++..+.|..-|+.+.+.. |. ...|+.+=+-|...++...|.+-+++..+-+ +.|-..|--+=++|.-.+.+.-|.
T Consensus 343 r~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHH
Confidence 444555555555555442 33 3677777777777778788888777777653 346777777788888888887787
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-----
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI----- 158 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----- 158 (209)
-.|+...+-. +-|...|.+|-.+|.+.++.++|.+.|.... +.+...+..+-+.|-+-++.++|-..|..-
T Consensus 419 yYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 419 YYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7777776643 5577899999999999999999999998873 345578888888898888888887777654
Q ss_pred --CC-CCCH-HhHHHHHHHhccccchhHHHHHHHHH
Q 045511 159 --DV-KPNA-NTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 159 --~~-~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
|. .|.. .....|-..+.+.+++++|.......
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 33 3322 22223444456667777766654433
No 88
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.93 E-value=0.0003 Score=60.78 Aligned_cols=184 Identities=12% Similarity=0.109 Sum_probs=135.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCC-------------------------
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP------------------------- 61 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------------------------- 61 (209)
...+.+.|.+.+...........+...+|++...+.+..+++.+......+...-
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 3444566677777766655555666889999999999999999999988887621
Q ss_pred --CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc--CccHhHHHHHHHHHHhCCChhhHHHHHHhcCC----CcHh
Q 045511 62 --SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF----PDVV 133 (209)
Q Consensus 62 --~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~ 133 (209)
+.++... -.++-++.+....+..+-+.....+..+ .-++..|.-+..+|...|.+.+|.++|..+.. .+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 2233333 1222333445555556666666666663 34566899999999999999999999999832 3577
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHH-hHHHHHHHhccccchhHHHHHHHHHH
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
.|=-+-.+|-..|.++.|.+.|... ...|+.. .-.+|-..+.+.|+.++|.+++..+.
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8999999999999999999999998 7777653 34455556778999999999998753
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.92 E-value=0.00053 Score=54.72 Aligned_cols=145 Identities=10% Similarity=0.020 Sum_probs=90.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHH----cCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLT----QSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAH 80 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 80 (209)
..++.+++.+.+.++.+.. |+. ..++. ...+. ..+..+.+.+.++. ..+..|+. .....+-..+...|
T Consensus 55 ~~g~~~~A~~~~~~~l~~~---P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 55 IAGDLPKALALLEQLLDDY---PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HcCCHHHHHHHHHHHHHHC---CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4566666766666666543 333 34332 11222 23444455555443 11222332 34445556677888
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-----CcH--hHHHHHHHHHHhCCChHHHHH
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDV--VTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~--~~~~~li~~~~~~g~~~~a~~ 153 (209)
++++|...++...+.. +.+...+..+-..|...|++++|...+++..+ ++. ..|-.+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888765 44566778888888888888888888877632 222 234466777888888888888
Q ss_pred HHhhC
Q 045511 154 MFCGI 158 (209)
Q Consensus 154 ~~~~m 158 (209)
.|++.
T Consensus 208 ~~~~~ 212 (355)
T cd05804 208 IYDTH 212 (355)
T ss_pred HHHHH
Confidence 88886
No 90
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00051 Score=55.54 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=99.0
Q ss_pred HcCCCccchHHHHHHhhhCCC--CCCHHHHHHHHH-------------------------------HHhccccHHHHHHH
Q 045511 42 TQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALK-------------------------------ACSLAHAHQKGLEI 88 (209)
Q Consensus 42 ~~~g~~~~a~~l~~~m~~~g~--~p~~~t~~~ll~-------------------------------~~~~~~~~~~a~~~ 88 (209)
-...+++.|..+|+++.++.. .-|..+|+.++- .|+-.++.+.|...
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 356899999999999988752 125566665543 33344567888888
Q ss_pred HHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc-------------------------------------CCCc
Q 045511 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-------------------------------------VFPD 131 (209)
Q Consensus 89 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------------------------------------~~~~ 131 (209)
|+..++-+ +-....|+.+-+=|....+...|.+-++.. ...|
T Consensus 353 FkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 353 FKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 88877755 334567777777777777766666666433 1235
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHH
Q 045511 132 VVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
...|.+|=.+|.+.++.++|+..|++. .-..+...+..+-+.+.+.++.++|.+.+..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 667777777777777777777777776 3334556777777777777777777776663
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.0038 Score=46.91 Aligned_cols=126 Identities=12% Similarity=0.031 Sum_probs=107.2
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
|...-+.+.....++|++.+|...|++...-. ++|..+|+.+=-+|.+.|+++.|..-|.+..+-- .-++...|+|-.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence 33456668889999999999999999987753 5788999999999999999999999998888753 446788999999
Q ss_pred HHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 110 FYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
.|.-+|+.+.|+.++..- +..|...-..+.......|++++|..+-..
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999999999999876 334778888888899999999999988765
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.00078 Score=54.70 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=99.4
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc-HhHHHHHHHHHHhCCChh
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~ 118 (209)
.....|+.++|+..++.+... .+-|..-.......+.+.++.++|.+-++.+.... |+ ....-++-.+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 355678888888888887764 33455666677778888888888888888887653 44 566777778888888888
Q ss_pred hHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 119 SAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 119 ~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+|.++++.-. .-|...|..|-.+|...|+..++..-..+. +...|+++.|.+.+....+.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~---------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG---------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH---------------HHhCCCHHHHHHHHHHHHHh
Confidence 8888888763 236778888888888888888888777774 22445666666665555444
No 93
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00018 Score=47.12 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhcc-CccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCC
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 146 (209)
|-...|..|...+++..+..+|+.+++.|+ .|++.+||.++.+.+++.--.++ -.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------------------ie~ 83 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------------------IEN 83 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------------------HHH
Confidence 344556667777999999999999999999 99999999999998887422100 011
Q ss_pred ChHHHHHHHhhC---CCCCCHHhHHHHHHHhcc
Q 045511 147 FHKEAIDMFCGI---DVKPNANTLVSVLSACSS 176 (209)
Q Consensus 147 ~~~~a~~~~~~m---~~~p~~~t~~~li~~~~~ 176 (209)
.+-..+.+|+.| +++|+..||+.++....+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 223344555555 677777777777766543
No 94
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.00023 Score=62.02 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=127.9
Q ss_pred CcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCC-CCCHHHHHHHHHHHhc------------
Q 045511 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSL------------ 78 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~------------ 78 (209)
.++...+.+...... .++..++.+=..+.+...+..|.+-|+...+.-. .+|..+.-.|=+.|..
T Consensus 547 ~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 547 YEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred HHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 334444444433322 2334444455566666666677766655554432 2444444444343322
Q ss_pred cccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHH
Q 045511 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMF 155 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 155 (209)
.+..+.|.++|+..++.. +.|...-|.+--.++.+|++.+|..+|.++.+. ...+|-.+-++|...|++..|+++|
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 134577888888888765 668888899999999999999999999998653 3467888899999999999999999
Q ss_pred hhC----CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhH
Q 045511 156 CGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNA 204 (209)
Q Consensus 156 ~~m----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 204 (209)
... .-.-+.....-|-+++.+.|.+.+|.+.+-..+.....-....||.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 877 5445667888889999999999999988765555443333344443
No 95
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.001 Score=51.53 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH-HHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHH
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF-YVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGL 142 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 142 (209)
.+|..++...-+.+..+.|..+|...++.+ ..+..+|-..-.. |.-.++.+.|.++|+... ..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468899999999999999999999998654 2233444443333 233467777999999873 35778899999999
Q ss_pred HhCCChHHHHHHHhhC-CCCCCH----HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 143 SKCGFHKEAIDMFCGI-DVKPNA----NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 143 ~~~g~~~~a~~~~~~m-~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
...|+.+.|..+|.+. ..-|.. ..|...++.-.+.|+++.+..+..++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998 334444 48999999999999999999999888765
No 96
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.002 Score=44.71 Aligned_cols=122 Identities=17% Similarity=0.047 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--HhHHHHHHHHHHhCCChhhHHHHHHhcCC--CcH----hHHHHH
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDV----VTWTTI 138 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l 138 (209)
..|..++..+ ..++...+...++.+.+...... ....-.+-..+...|++++|...|+.... |+. ...-.+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566667766 47888999999999988752221 22333455788899999999999998832 332 344556
Q ss_pred HHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHH
Q 045511 139 ISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
...+...|++++|+..+... +-......+...-..+.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999999999886 3333445566677778999999999999875
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.83 E-value=0.0021 Score=55.88 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHH
Q 045511 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTI 138 (209)
Q Consensus 62 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l 138 (209)
...+...+-.|-....+.|++++|+.+++...+.. +-+......+...+.+.+++++|....++.- .| +....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34568889999999999999999999999998864 3456788899999999999999999999983 35 45667777
Q ss_pred HHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 139 ISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
-.++.+.|++++|..+|++. ...|+ ..++..+-.++.+.|+.++|...|....+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999 44455 578888999999999999999999987555
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.00086 Score=45.71 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
.....+...+.+.|+.++|...|+.....+ +.+...+..+-..+.+.|+++.|...++...+.+ +.+...+..+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 556677788889999999999999998765 3467888888889999999999999999887765 55677888888899
Q ss_pred HhCCChhhHHHHHHhcC
Q 045511 112 VTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~ 128 (209)
...|+.++|.+.|+...
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 96 LALGEPESALKALDLAI 112 (135)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999999998874
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.83 E-value=0.00045 Score=60.95 Aligned_cols=119 Identities=11% Similarity=0.042 Sum_probs=80.5
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH--------------
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-------------- 66 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------------- 66 (209)
|+..+ ..++++++.+...+..+.++..+....|... .+.+.++.+++..+ .+... +..+.
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHHHHHh
Confidence 45566 6777777777777655555333333333333 55666666666555 22221 11222
Q ss_pred -----HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 67 -----YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 67 -----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..+-.+-.+|-+.|+.+++..+++.+++.. +.|+.+.|.+-..|... ++++|++++.+.
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 455566677777799999999999999887 77889999999999999 999999888654
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.83 E-value=0.0027 Score=57.75 Aligned_cols=145 Identities=10% Similarity=0.063 Sum_probs=102.2
Q ss_pred CccchHHHHHHhhhCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHh-ccCc---cHhHHHHHHHHHHhCCChhhH
Q 045511 46 TPQNAIPLYNKMLNCPSSYN-HYTFTQALKACSLAHAHQKGLEIHAHVIKY-GHLH---DIFIQNSLLHFYVTVKDIFSA 120 (209)
Q Consensus 46 ~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~---~~~~~~~ll~~~~~~g~~~~a 120 (209)
..+.|.++-+..+.. || ...|-..|..+...++++.|.++.+..+.. ++.- -..+|.++++.-..-|.-+..
T Consensus 1440 ~pesaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 444555555555442 44 466888888899999999999998887754 1211 134777777777777877888
Q ss_pred HHHHHhcCC-Cc-HhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 121 HQIFNSVVF-PD-VVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 121 ~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.++|++..+ -| ...|..|..-|.+.+..++|-++++.| .+.-....|...+..+.+..+.+.|..++.+.+++
T Consensus 1517 ~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1517 KKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 888888754 23 456777888888888888888888888 44445567777777777777777777777765544
No 101
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00037 Score=43.22 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
+...+.+.|++++|...+++..+... .+...+..+...+...++++.|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 33334444444444444444433221 112333334444444444444444444443332 1122333444444444444
Q ss_pred hhhHHHHHH
Q 045511 117 IFSAHQIFN 125 (209)
Q Consensus 117 ~~~a~~~~~ 125 (209)
.++|.+.+.
T Consensus 84 ~~~a~~~~~ 92 (100)
T cd00189 84 YEEALEAYE 92 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
No 102
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.78 E-value=0.0034 Score=51.11 Aligned_cols=160 Identities=15% Similarity=0.105 Sum_probs=120.0
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+...+...+.+......-..+..++.+-.+.+ -..--|...+..| ..|.++.|+..++.+...- +-|+.-+.....
T Consensus 273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~ 348 (484)
T COG4783 273 DFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGD 348 (484)
T ss_pred cHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHHHHH-HhcccchHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34666677776666655555554544444321 2334577766665 7789999999999977653 567778888889
Q ss_pred HHHhCCChhhHHHHHHhcC--CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHH
Q 045511 110 FYVTVKDIFSAHQIFNSVV--FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~ 184 (209)
.+.+.++..+|.+.++++. .|+ ...+-.+-.+|.+.|++.+|..++++- ..+-|...|..|-++|...|+..++.
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 9999999999999999984 355 455666778999999999999999998 55557789999999999999999988
Q ss_pred HHHHHHHHh
Q 045511 185 AIHAHSLRN 193 (209)
Q Consensus 185 ~~~~~~~~~ 193 (209)
.-..+....
T Consensus 429 ~A~AE~~~~ 437 (484)
T COG4783 429 LARAEGYAL 437 (484)
T ss_pred HHHHHHHHh
Confidence 887766443
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.73 E-value=0.0036 Score=52.56 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=99.5
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHh----c--c
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS----L--A 79 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~----~--~ 79 (209)
..|+.++|++.+..-... .+|. ......-..+.+.|+.++|..+|+.+.+.+ |+...|-..+..+. . .
T Consensus 16 e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 566777777666543332 2444 556677777778888888888888888866 56666555555554 1 1
Q ss_pred ccHHHHHHHHHHHHHhccC------------------------------cc-HhHHHHHHHHHHhCCChhhHHHHHHhc-
Q 045511 80 HAHQKGLEIHAHVIKYGHL------------------------------HD-IFIQNSLLHFYVTVKDIFSAHQIFNSV- 127 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~------------------------------~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~- 127 (209)
...+...++++.+.+.-.. -+ +.+++.|-..|......+-..+++...
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 1334444444444332100 00 223333333333333333333333222
Q ss_pred -----------------CCCcHhHH--HHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHH
Q 045511 128 -----------------VFPDVVTW--TTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 128 -----------------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~ 186 (209)
..|+...| .-+-..|-..|++++|++..++. ...|+. ..|..--+.+-+.|++++|.+.
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 01333233 44445566677777777777766 666664 4566666666677777777776
Q ss_pred HHHHHHh
Q 045511 187 HAHSLRN 193 (209)
Q Consensus 187 ~~~~~~~ 193 (209)
.+..++.
T Consensus 251 ~~~Ar~L 257 (517)
T PF12569_consen 251 MDEAREL 257 (517)
T ss_pred HHHHHhC
Confidence 6655443
No 104
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.72 E-value=0.0072 Score=50.81 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=117.4
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhC----C----------CCCCH--HHHHHHHHHHhccccHHHHHHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNC----P----------SSYNH--YTFTQALKACSLAHAHQKGLEIHAHVI 93 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~ 93 (209)
-+..|+.|-..|....+.+-..+++...... | -+|.. +++.-+-..|-..|++++|.+.++...
T Consensus 142 vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 142 VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3467777777777666666666666665432 1 12443 355666777788999999999999888
Q ss_pred HhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCHHh-
Q 045511 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT- 166 (209)
Q Consensus 94 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~~t- 166 (209)
+.. +..+..|..--+.|-+.|++++|.+.++..+. .|...-+-..+-+.++|+.++|.+++... +..|-...
T Consensus 222 ~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 222 EHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred hcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 764 33367888888999999999999999988754 46778888899999999999999998887 33332211
Q ss_pred ---H----HHHHHHhccccchhHHHHHHHHHHHh
Q 045511 167 ---L----VSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 167 ---~----~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+ +-.-.+|.+.|++..|..-|..+.+.
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 33356677889999888877766544
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0019 Score=48.81 Aligned_cols=109 Identities=12% Similarity=0.013 Sum_probs=49.2
Q ss_pred HHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh----CCC
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT----VKD 116 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~ 116 (209)
|+..|++++|++..+.. -+......=+..+.+..+++.|++.++.|.+.. +..|.+-|-.++.+ .+.
T Consensus 118 ~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchh
Confidence 34445555555554431 122222233333344445555555555554432 23333333333322 234
Q ss_pred hhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 117 IFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 117 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+.+|.=+|++|.+ |+..+-|-...++...|++++|..++.+.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555555533 44444445555555555555555555554
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0012 Score=47.23 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
..|..+-..+.+.|++++|...|++..+.+..++ ...+..+-..+.+.|+++.|...++...+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 5566667777778888888888887776442222 3567777777788888888888887777653 224556666666
Q ss_pred HHHhCCCh
Q 045511 110 FYVTVKDI 117 (209)
Q Consensus 110 ~~~~~g~~ 117 (209)
.|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 67666664
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0012 Score=51.91 Aligned_cols=162 Identities=10% Similarity=0.062 Sum_probs=103.6
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHH-----hccccHHHHHHHHHHHHHhccCc------------
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC-----SLAHAHQKGLEIHAHVIKYGHLH------------ 99 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~-----~~~~~~~~a~~~~~~m~~~g~~~------------ 99 (209)
|+-.+.+.+++.+|..+.+++.. ..|-......++.+- .....+.-|.+.|...-+++..-
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 44557788888888888766543 334444433333332 22234556777777776666432
Q ss_pred --------cHhHHHHHHHH---------------HHhCCChhhHHHHHHhcCCC---cHhHHHHHH-HHHHhCCChHHHH
Q 045511 100 --------DIFIQNSLLHF---------------YVTVKDIFSAHQIFNSVVFP---DVVTWTTII-SGLSKCGFHKEAI 152 (209)
Q Consensus 100 --------~~~~~~~ll~~---------------~~~~g~~~~a~~~~~~~~~~---~~~~~~~li-~~~~~~g~~~~a~ 152 (209)
|+.+|-.-|.+ ++..|++.+|+++|-.++.| |..+|-+++ ++|.+.|.++.|+
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 23344433443 44457788999999888654 566776655 8899999999999
Q ss_pred HHHhhCCCCCCHHh-HHHHHHHhccccchhHHHHHHHHHHHhccCCCchhH
Q 045511 153 DMFCGIDVKPNANT-LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202 (209)
Q Consensus 153 ~~~~~m~~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 202 (209)
+++-.+.-..+..+ ...+-+.|.+.+.+--|...|+++... .|++.-|
T Consensus 449 ~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 449 DMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 99888733333333 444556788888888888888877665 5555444
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0034 Score=47.45 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=101.6
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCc
Q 045511 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 131 (209)
Q Consensus 52 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 131 (209)
++.+.+......-|......-...|+..|++++|++.... | .+......=+..+.+..+++-|++-++.|.+.|
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4455555555555544455556678899999999888654 2 233344444567788899999999999998754
Q ss_pred -HhHHHHHHHH----HHhCCChHHHHHHHhhC-C-CCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 132 -VVTWTTIISG----LSKCGFHKEAIDMFCGI-D-VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 132 -~~~~~~li~~----~~~~g~~~~a~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
..+.+-|..+ ....+.+.+|+-+|.+| + ..|+..+.+....++...|++++|+.++.....+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3444444444 44456789999999999 4 89999999999999999999999999999887764
No 109
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.00089 Score=41.43 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=71.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC 145 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 145 (209)
+..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|.+.++... ..+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4556667778899999999999887764 3344778888889999999999999998763 23446788888899999
Q ss_pred CChHHHHHHHhhC
Q 045511 146 GFHKEAIDMFCGI 158 (209)
Q Consensus 146 g~~~~a~~~~~~m 158 (209)
|+++.|...+.+.
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 9999999988775
No 110
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.0047 Score=50.45 Aligned_cols=183 Identities=12% Similarity=0.065 Sum_probs=128.5
Q ss_pred hccCCCcchHhHHHHHHHHhhCC-----CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIP-----QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAH 80 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 80 (209)
+-++-++..+.+..++..+.... +...|--.+..=.++.++..|..++++.... -|-+ ..|-..+..=-..|
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhc
Confidence 44555555555666655553333 3355555666777888888888888877653 2333 44555666666778
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
++..|.++|+...+ ..|+...|++.|+.=.+-..++.|..+++.. ..|++.+|--..+-=-++|+...+..+|...
T Consensus 156 Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 156 NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 88999999887765 4689999999999999999999999999887 4688888888888888888888888888776
Q ss_pred ----CC-CCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 159 ----DV-KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 159 ----~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|- .-+...|.++-.--.+...++.|.-++....++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 122334455544445567778888888776655
No 111
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.006 Score=48.15 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchh
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRK 181 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~ 181 (209)
.+.+.-|.-+...|+...|.++-.+..=|+..-|-..|.+|+..++|++-.++.+. +-+++-|..++.+|.+.|...
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCCCHH
Confidence 35666678888999999999999999889999999999999999999998887665 445688999999999999988
Q ss_pred HHHHHHHH
Q 045511 182 LGKAIHAH 189 (209)
Q Consensus 182 ~a~~~~~~ 189 (209)
+|..+...
T Consensus 255 eA~~yI~k 262 (319)
T PF04840_consen 255 EASKYIPK 262 (319)
T ss_pred HHHHHHHh
Confidence 88877665
No 112
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00049 Score=43.03 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHHHHhcc-CccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHH
Q 045511 79 AHAHQKGLEIHAHVIKYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMF 155 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 155 (209)
.|+++.|..+++.+.+... .++...+-.+-.+|.+.|++++|.++++... ..+....-.+-.+|.+.|++++|++.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3556666666666665543 1233444446666666666666666665521 112222223345666666666666665
Q ss_pred h
Q 045511 156 C 156 (209)
Q Consensus 156 ~ 156 (209)
.
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 4
No 113
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.56 E-value=0.0022 Score=42.33 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccC--ccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCc----HhHHHHHH
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD----VVTWTTII 139 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~----~~~~~~li 139 (209)
++-.....+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|++++|.+.|+... .|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555666666666666666554311 112344556666666666666666666552 122 23445555
Q ss_pred HHHHhCCChHHHHHHHhhC
Q 045511 140 SGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m 158 (209)
..+.+.|++++|...+.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 5556666666666666665
No 114
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.55 E-value=0.0011 Score=44.89 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=60.6
Q ss_pred cHhHHHHHHHHHHhCCChhhHHHHHHhc-------------------CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC--
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSV-------------------VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-- 158 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-- 158 (209)
|..++.++|.++++.|+++...++++.. ..|+..+..+++.+|+..|++..|+++.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888899999999999888888655 0266777788888888888888888777777
Q ss_pred --CCCCCHHhHHHHHHHhccccc
Q 045511 159 --DVKPNANTLVSVLSACSSLGS 179 (209)
Q Consensus 159 --~~~p~~~t~~~li~~~~~~g~ 179 (209)
++..+..+|..|++-+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 766677778888777655444
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.52 E-value=0.0038 Score=41.19 Aligned_cols=94 Identities=13% Similarity=-0.024 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCC--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccC--ccHhHHHHHHH
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL--HDIFIQNSLLH 109 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~ 109 (209)
+-.+...+.+.|++++|.+.|+.+.+..- ......+-.+...+.+.|+++.|.+.|+...+.... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44445555566666666666666654321 011234444555566666666666666665543211 11344555555
Q ss_pred HHHhCCChhhHHHHHHhc
Q 045511 110 FYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~ 127 (209)
.+.+.|+.++|.+.++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHhCChHHHHHHHHHH
Confidence 666666666666666655
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0021 Score=51.61 Aligned_cols=98 Identities=7% Similarity=0.040 Sum_probs=59.3
Q ss_pred HhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHH
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAI 152 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 152 (209)
....|+++.|.+.|+..++.. +.+...|..+-.+|.+.|++++|...++...+ .+...|..+-.+|...|++++|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 345566666666666666544 33455666666666666777777666666522 24455666666666677777777
Q ss_pred HHHhhC-CCCCCHHhHHHHHHHh
Q 045511 153 DMFCGI-DVKPNANTLVSVLSAC 174 (209)
Q Consensus 153 ~~~~~m-~~~p~~~t~~~li~~~ 174 (209)
..|++. .+.|+.......+..|
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 777666 5566655555444444
No 117
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0039 Score=55.25 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=64.1
Q ss_pred hhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHH
Q 045511 26 IKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105 (209)
Q Consensus 26 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 105 (209)
....|+..|--+|....+.|.+++-.+.+.-.++..-.|.+. +.+|-+|++.+++.+.++++ ..||..-..
T Consensus 1128 ikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1128 IKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred HhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 333444555555555555555555555544444433333333 34455555555554444433 234444444
Q ss_pred HHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhcc
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 176 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~ 176 (209)
.+-+-|...|.++.|.-+|. ++..|.-+...+...|++..|.+.-+. .-+..||..+--+|..
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRK---Ans~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARK---ANSTKTWKEVCFACVD 1261 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHhc
Confidence 44444444455555544444 344566666666666666655544433 2233344444444433
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.0011 Score=39.34 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTI 138 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l 138 (209)
+.|++++|.+.|+.+.+.. +-+...+-.+..+|.+.|++++|.++++.+. .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4566777777777766654 3355566667777777777777777777663 3443444433
No 119
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.0062 Score=49.77 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=121.5
Q ss_pred cCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHH
Q 045511 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 122 (209)
..+++.+|.++|++..... .-++..|-..+..=.+...+..|..+++.....= +.-...|--.+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677888999999988755 3466666667777788888888999988776542 2222455556666667899999999
Q ss_pred HHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 123 IFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 123 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+|+.-. +|+...|++.|+.=.+-+.++.|..+|.+. -+.|+..+|--..+--.++|....+..++....+.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999864 699999999999999999999999999999 78899999998888889999999999999876544
No 120
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.45 E-value=0.002 Score=43.60 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHh
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKM 57 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m 57 (209)
..++.++|.++++.|+++....+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 456777888888888888887777655
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0032 Score=52.15 Aligned_cols=164 Identities=13% Similarity=0.043 Sum_probs=109.1
Q ss_pred CCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccccHHHHHHH
Q 045511 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHAHQKGLEI 88 (209)
Q Consensus 10 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~ 88 (209)
..+.|..-+..+-+.++..--+..|-. --|.+.++.+.|.+.|.+... +-|+. ..++-+=-..-..+.+.+|..+
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlg--mey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLG--MEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHH--HHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHH
Confidence 334444444444444433222233322 235667788888888766554 44543 3333333333346778888888
Q ss_pred HHHHHHhc--cC----ccHhHHHHHHHHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 89 HAHVIKYG--HL----HDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 89 ~~~m~~~g--~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
|+..++.- +. .-..+++.|-+.|.+.+..++|...++.. ...+..+++++--.|...|+++.|.+.|++-
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 87666221 11 12346888889999999999999999876 5678888889888889999999999999888
Q ss_pred CCCCCHHhHHHHHHHhccc
Q 045511 159 DVKPNANTLVSVLSACSSL 177 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~~~ 177 (209)
.++||..+.+.+++.+...
T Consensus 517 ~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 517 ALKPDNIFISELLKLAIED 535 (611)
T ss_pred hcCCccHHHHHHHHHHHHh
Confidence 9999998888888866543
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.44 E-value=0.001 Score=39.58 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=44.0
Q ss_pred HhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHH
Q 045511 112 VTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVL 171 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li 171 (209)
.+.|++++|.++|+.+. .| +...+-.+..+|.+.|++++|.+++.++ ...|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 46788888888888872 23 5666677888888888888888888888 7777766665544
No 123
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.028 Score=44.41 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
.+.+..|.-+...|+...|.++-.+.+ + ||..-|-.-+.+++..+++++.+++-.. +-++.-|.-.+..|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 344444555555555555555544332 2 5555555556666666665544443211 12345555555556
Q ss_pred HhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhc
Q 045511 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 175 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~ 175 (209)
.+.|+..+|.++...++ +.--+..|.+.|++.+|.+.-.+ .-|......+.+.|.
T Consensus 248 ~~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~~---~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAFK---EKDIDLLKQILKRCP 302 (319)
T ss_pred HHCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHHH---cCCHHHHHHHHHHCC
Confidence 66666656655555532 23444555555555555444333 223344444444443
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0045 Score=44.08 Aligned_cols=61 Identities=7% Similarity=0.005 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCc--cHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH--DIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..|..+...+...|++++|...|+........+ ...++..+-..|...|+.++|.+.++..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444555555566666666666555432221 1235555556666666666666666554
No 125
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0067 Score=49.66 Aligned_cols=180 Identities=8% Similarity=0.025 Sum_probs=112.6
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
.|.+..+..-++.........+ ..|--+-..|.+..+.++.+..|+...+-+- -|..+|..--+...-.++++.|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~--~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN--SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc--hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHH
Confidence 3455556666666655543322 2266677778888888888888887777542 244556665566666677777777
Q ss_pred HHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC
Q 045511 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN 163 (209)
Q Consensus 88 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~ 163 (209)
=|+...+-. +-++..|--+.-+.-|.+.+++++..|++... | ....||-.-..+...++++.|.+.|+.. .+.|+
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 777766543 23455666666666677888888888887732 4 3567777788888888888888888766 44444
Q ss_pred -------HHhH-HHHHHHhccccchhHHHHHHHHHH
Q 045511 164 -------ANTL-VSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 164 -------~~t~-~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
..++ +--+-.....+++..|.++++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI 530 (606)
T ss_pred cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH
Confidence 1111 111222234566666666665443
No 126
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0058 Score=50.04 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=123.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a 85 (209)
...++++.++.|..+.+.-+.-| .+|..--....-.+++++|..=|++..... | ++..|.-+--+.-+.+.++++
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~--dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENP--DVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCC--chhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777776654434 455444444555568888888888887743 4 334555555555677889999
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--Cc-------H--hHHHHHHHHHHhCCChHHHHHH
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PD-------V--VTWTTIISGLSKCGFHKEAIDM 154 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-------~--~~~~~li~~~~~~g~~~~a~~~ 154 (209)
+..|++.+++ ++.-+..||-.-..+...++++.|.+.|+...+ |+ . ..--.++-.- =.+++..|.++
T Consensus 448 m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~L 525 (606)
T KOG0547|consen 448 MKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENL 525 (606)
T ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHH
Confidence 9999998876 466678899888999999999999999987632 22 1 1111111111 23788889999
Q ss_pred HhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHH
Q 045511 155 FCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 155 ~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
+... .+.|-. ..|.+|-..-...|+.++|.++|+.-
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8887 666644 57888888888899999999998843
No 127
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.36 E-value=0.0095 Score=42.60 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--HhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTIIS 140 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~ 140 (209)
...|..+-..+...|++++|...|+...+....+. ...+..+-..+.+.|++++|.+.+.+..+ | +...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34566667777788899999998888876543332 45778888888888888888888887632 2 4555666666
Q ss_pred HHHhCCC
Q 045511 141 GLSKCGF 147 (209)
Q Consensus 141 ~~~~~g~ 147 (209)
.+...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 6666665
No 128
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.31 E-value=0.013 Score=51.17 Aligned_cols=156 Identities=14% Similarity=0.153 Sum_probs=117.9
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSS--YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 114 (209)
++-++......+....+.......++. -+..-|--+..++...|++.+|..+|..+......-+...|=.+-.+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 334455666666666677777777744 455678889999999999999999999999887777788999999999999
Q ss_pred CChhhHHHHHHhcCC--Cc-HhHHHHHHHHHHhCCChHHHHHHHhhC-----------CCCCCHHhHHHHHHHhccccch
Q 045511 115 KDIFSAHQIFNSVVF--PD-VVTWTTIISGLSKCGFHKEAIDMFCGI-----------DVKPNANTLVSVLSACSSLGSR 180 (209)
Q Consensus 115 g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m-----------~~~p~~~t~~~li~~~~~~g~~ 180 (209)
|..++|.+.|+.... |+ ...--+|-..+-+.|++++|.+++..| +..|+...--.....+...|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999843 42 334445556778899999999999997 3445665555566667777887
Q ss_pred hHHHHHHHHHHH
Q 045511 181 KLGKAIHAHSLR 192 (209)
Q Consensus 181 ~~a~~~~~~~~~ 192 (209)
++=..+-..|..
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 765555555443
No 129
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.027 Score=46.89 Aligned_cols=175 Identities=12% Similarity=0.012 Sum_probs=121.1
Q ss_pred CCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHH--------------------------------
Q 045511 29 PQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA-------------------------------- 75 (209)
Q Consensus 29 p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~-------------------------------- 75 (209)
|+. .+|-++-..|.-.|+..+|.+.|.+...-+-... ..|-..-..
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 544 7888887777778888888888877654321100 111111111
Q ss_pred --HhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--------C-C-cHhHHHHHHHHHH
Q 045511 76 --CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--------F-P-DVVTWTTIISGLS 143 (209)
Q Consensus 76 --~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~-~-~~~~~~~li~~~~ 143 (209)
|.+.+.++.|.++|.+..... +-|+.+.+-+--.....+.+.+|..+|.... + + -..+++.|=..|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 244466777777776665432 3456777777767777888999999987652 1 1 2346788889999
Q ss_pred hCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhh
Q 045511 144 KCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 207 (209)
+.+.+++|+..|+.- -.+-|..|++++--.+...|+++.|.+.|... ..+.|+-.+.+.+++
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa--L~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA--LALKPDNIFISELLK 530 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCccHHHHHHHH
Confidence 999999999999988 44457788888888888999999999988654 356777766666654
No 130
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0072 Score=43.00 Aligned_cols=93 Identities=12% Similarity=-0.018 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
..|..+...+...|++++|...|++.......| ...+|..+-..+...|++++|.+.++...+.. +....+++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 667778888888999999999999997654222 23578888899999999999999999888653 333455666666
Q ss_pred HHH-------hCCChhhHHHHHH
Q 045511 110 FYV-------TVKDIFSAHQIFN 125 (209)
Q Consensus 110 ~~~-------~~g~~~~a~~~~~ 125 (209)
.+. +.|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 666 6666665544443
No 131
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.28 E-value=0.00051 Score=42.95 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCCccchHHHHHHhhhCCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHH
Q 045511 44 SSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 122 (209)
.|+++.|..+++++.+... .|+...+-.+-.++.+.|+++.|.++++. .+.+. .+....-.+-.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788899999999988653 12444555578888999999999999988 33332 223333355788899999999999
Q ss_pred HHHh
Q 045511 123 IFNS 126 (209)
Q Consensus 123 ~~~~ 126 (209)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.28 E-value=0.025 Score=47.73 Aligned_cols=59 Identities=12% Similarity=0.051 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 133 VTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 133 ~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
..|.++--.....|++++|...+++. .+.|+...|..+-+.+...|+.++|.+.+....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444456666666666665 555555556666666666666666666655543
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.029 Score=42.29 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=81.0
Q ss_pred cchhccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHH
Q 045511 4 NGLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83 (209)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 83 (209)
.++-.++...|..-+.++...|+..+.+.-..++. +-..|+.++|.++++.+.+.+ +-|.++|..=+-..-..|+--
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence 34445556666666666666664433332222211 123466677777777776665 345555555444444455555
Q ss_pred HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCCcHhH-HHHHHHHHHhC---CChHHHHHHHhh
Q 045511 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVT-WTTIISGLSKC---GFHKEAIDMFCG 157 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~-~~~li~~~~~~---g~~~~a~~~~~~ 157 (209)
+|.+-+....+. +.-|...|.-+-..|...|+++.|--+++++ .+|.... |-.+-..+.-. .+.+.+...|.+
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555554 3556677777777777777777777777776 3443322 22232222222 234455566655
Q ss_pred C
Q 045511 158 I 158 (209)
Q Consensus 158 m 158 (209)
-
T Consensus 217 a 217 (289)
T KOG3060|consen 217 A 217 (289)
T ss_pred H
Confidence 4
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.21 E-value=0.0067 Score=51.77 Aligned_cols=157 Identities=8% Similarity=0.011 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cC--c---------
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HL--H--------- 99 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~--~--------- 99 (209)
.-|..+|.+|+..|+.+.|..+..+..+ -+||..-|..+.......--++.|.++.+..-.+. .. +
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 5678888889999988888888877776 35888888888888877777777877776543220 00 0
Q ss_pred ---------------cHhHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CC
Q 045511 100 ---------------DIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DV 160 (209)
Q Consensus 100 ---------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~ 160 (209)
-..+|=.+=.+..+.++++.|.+.|..-. +| +...||.+-.+|.+.|+-.+|...+++- ..
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 01112222222233344555555555442 23 3456666666666666666666666665 11
Q ss_pred -CCCHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 161 -KPNANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 161 -~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
.-+-..|.-.+-...+.|.+++|.+.+.++
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 112233444444555666666666666654
No 135
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.18 E-value=0.0026 Score=44.15 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC--------CCCCCHHh
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI--------DVKPNANT 166 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--------~~~p~~~t 166 (209)
+...++..+...|++++|.++..... ..|...|-.+|.+|...|+...|.+.|+++ |+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555555666666666666666652 234556666666666666666666666665 66666554
No 136
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.006 Score=53.58 Aligned_cols=193 Identities=15% Similarity=0.098 Sum_probs=126.9
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHH-cCCCccchHHHHHHhhhCC-CCCCHHHHHHHHHHHhccccHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLT-QSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
-++.+.|.+.+.++.... |..+..-.-+.+++ ..++..+|..+++...+.+ -.|++.+ .+=..+.+...+..|
T Consensus 509 l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars--l~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS--LLGNLHLKKSEWKPA 583 (1018)
T ss_pred hhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH--HHHHHHHhhhhhccc
Confidence 345555555565555543 65544443333333 3467778888888877654 4455543 333456666677777
Q ss_pred HHHHHHHHHhc-cCccHhHHHHHHHHHHhC------------CChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChH
Q 045511 86 LEIHAHVIKYG-HLHDIFIQNSLLHFYVTV------------KDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHK 149 (209)
Q Consensus 86 ~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~------------g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 149 (209)
.+-|....+.- ..+|+.+.-+|-+.|... +..+.|.++|.+.- ..|...=|-+-..++..|+++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 77777666543 235666666666655432 45778888988773 357788888889999999999
Q ss_pred HHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh-ccCCCchhHhHh
Q 045511 150 EAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN-LNENNIILDNAV 205 (209)
Q Consensus 150 ~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l 205 (209)
+|..+|... ...-+..+|--+-.+|...|++..|.++|+...+. .-+-++.+-+.|
T Consensus 664 ~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 664 EARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred HHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 999999998 22234456777888899999999999999965554 433344443333
No 137
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.027 Score=42.80 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=107.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH--
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH-- 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-- 109 (209)
.+-+.++..+.-.|.+.-..+++++..+.+-+-+..-.+.+...-.+.|+.+.+...|+...+..-..|..+.+.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 344666666677788888889999998877677888889999999999999999999998887665666666665554
Q ss_pred ---HHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHH
Q 045511 110 ---FYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVL 171 (209)
Q Consensus 110 ---~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li 171 (209)
.|.-.+++.+|...|++++. .|...-|.-.-++...|+..+|.+....| ...|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 45556788999999988854 35566666666666789999999999999 7777776655443
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.12 E-value=0.0032 Score=54.05 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=71.7
Q ss_pred hccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
.....+..|..+++.+.... .-..-|..+-+-|+..|+++.|+++|-+- ..++--|..|.++|+|++|.++-.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHH
Confidence 34445566666666665443 23445788888999999999999999753 236677888999999999998887
Q ss_pred hC-CCCCCHHhHHHHHHHhccccchhHHHHHH
Q 045511 157 GI-DVKPNANTLVSVLSACSSLGSRKLGKAIH 187 (209)
Q Consensus 157 ~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 187 (209)
+. |-......|-+--.-.-+.|++.+|++++
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 76 55545555655555555666666666654
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.017 Score=38.78 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=62.0
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCc--cHhHHHHHHHHHHhC
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH--DIFIQNSLLHFYVTV 114 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~ 114 (209)
.++-..|+.++|..+|++-...|+... ...+--+-+.+...|++++|..+++........+ +....-.+-.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 345566788888888888877776544 2345555666677788888888887776543110 112222233356667
Q ss_pred CChhhHHHHHHhcCCCcHhHHHHHHHHHH
Q 045511 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLS 143 (209)
Q Consensus 115 g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 143 (209)
|+.++|.+.+-....++...|.--|..|+
T Consensus 89 gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 89 GRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777765543344444444444443
No 140
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.11 E-value=0.096 Score=44.80 Aligned_cols=180 Identities=14% Similarity=0.061 Sum_probs=110.9
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
.|....+...+.++.+.. |+. ..|=.-+..-..+.++++|..+|.+-.. ..|+...|-.-+..---.+..++|.
T Consensus 597 agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred cCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 445555555555555443 333 5666666666677777777777766655 3356666665555555566677777
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHHHHHHhCCChHHHHHHHhhC--CCC
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTIISGLSKCGFHKEAIDMFCGI--DVK 161 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~ 161 (209)
+++++.++.- +.=...|-.+-..+-..++++.|.+.|..=.+ | ....|-.+.+.=-+.|++-+|..++++- .-.
T Consensus 672 rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 672 RLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 7766665542 22234555555566666666666666654322 3 3445666666666677778888888776 223
Q ss_pred CCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
-|...|-..|+.-.+.|+.+.|+.+.....+.
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35567777788888888888888777665554
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.11 E-value=0.0092 Score=45.29 Aligned_cols=160 Identities=13% Similarity=0.005 Sum_probs=104.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHH--HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT--FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
..|.. ...+.+.|++++|.+.|+.+...-..+.... .-.+..++-+.++++.|...++...+.-......-|...+.
T Consensus 34 ~~Y~~-A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 34 EIYAT-AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 44444 4445678999999999999988542222111 12455777889999999999999988754433445555555
Q ss_pred HHHh-----------------CCCh---hhHHHHHHhcCC--CcH------h-----HH-------HHHHHHHHhCCChH
Q 045511 110 FYVT-----------------VKDI---FSAHQIFNSVVF--PDV------V-----TW-------TTIISGLSKCGFHK 149 (209)
Q Consensus 110 ~~~~-----------------~g~~---~~a~~~~~~~~~--~~~------~-----~~-------~~li~~~~~~g~~~ 149 (209)
+.+. ..+. .+|.+.|+.+.+ |+. . .- -.+.+-|.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 5441 1122 344455555421 221 1 11 12346688899999
Q ss_pred HHHHHHhhC-----CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 150 EAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 150 ~a~~~~~~m-----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
.|..-|+.+ +.+......-.++++|...|..++|..+.+.+..
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 998888888 4444556788899999999999999988776643
No 142
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.03 E-value=0.13 Score=44.00 Aligned_cols=154 Identities=8% Similarity=-0.015 Sum_probs=61.8
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 112 (209)
+|+.--..|.+.+.++-|..+|....+. ++-+...|......=-..|..++.+.+|+.....- +.....|--..+.+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 3333333333444444444444443332 11222333333333333344444444444443331 223333444444444
Q ss_pred hCCChhhHHHHHHhcCC--C-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHH
Q 045511 113 TVKDIFSAHQIFNSVVF--P-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
..|++..|..+++..-+ | +...|-+-++....+..++.|..+|... ...|+...|.--++.---.++.++|.++++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 44555555444444311 1 2334444444444444444444444444 444444444333333333344444444443
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.01 E-value=0.016 Score=46.64 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=65.3
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChh
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 118 (209)
......|++++|...|++..+.+- -+...|..+-.++.+.|++++|...++..++.. +.+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 345567888888888888877542 345667777778888888888888888887764 345667777888888888888
Q ss_pred hHHHHHHhc
Q 045511 119 SAHQIFNSV 127 (209)
Q Consensus 119 ~a~~~~~~~ 127 (209)
+|...|++.
T Consensus 88 eA~~~~~~a 96 (356)
T PLN03088 88 TAKAALEKG 96 (356)
T ss_pred HHHHHHHHH
Confidence 888888776
No 144
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.01 E-value=0.064 Score=45.65 Aligned_cols=153 Identities=10% Similarity=0.103 Sum_probs=94.6
Q ss_pred HHHHHHcCCCccchHHHHHHhhhC-CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNC-PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 115 (209)
....+.+.|++......|++.... .+.--...|...+......+-++-+.+++...++ .++..-+.-|..+++.+
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhcc
Confidence 333344445555555555444332 1122224455556666666666666677666654 23445777788888888
Q ss_pred ChhhHHHHHHhcC----------CCcHhHHHHHHHHHHhCCChHH---HHHHHhhC-CCCCCHH--hHHHHHHHhccccc
Q 045511 116 DIFSAHQIFNSVV----------FPDVVTWTTIISGLSKCGFHKE---AIDMFCGI-DVKPNAN--TLVSVLSACSSLGS 179 (209)
Q Consensus 116 ~~~~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m-~~~p~~~--t~~~li~~~~~~g~ 179 (209)
+.++|-+.+.... +.+-..|+-+-...+++.+.-. ...+++.+ +.-||.. .|++|-+.|.+.|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 8888888877662 2345567766666666554332 44556665 6667764 57888888888888
Q ss_pred hhHHHHHHHHHHHh
Q 045511 180 RKLGKAIHAHSLRN 193 (209)
Q Consensus 180 ~~~a~~~~~~~~~~ 193 (209)
+++|..++.+..+.
T Consensus 264 ~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 264 FEKARDVYEEAIQT 277 (835)
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888876555
No 145
>PLN02789 farnesyltranstransferase
Probab=96.96 E-value=0.13 Score=40.74 Aligned_cols=182 Identities=6% Similarity=-0.024 Sum_probs=108.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCC-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc--HH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA--HQ 83 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~ 83 (209)
+..+.++|+....++.+..+. +..+|+.--..+.+.| ++++++..++++.+.+. -+..+|+.--..+.+.|+ .+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 455666667666666655321 3356665555555666 57888888888887653 233455544333444454 25
Q ss_pred HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhC---CCh----HHHHH
Q 045511 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKC---GFH----KEAID 153 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---g~~----~~a~~ 153 (209)
.+.++++.+.+.. +-|-.+|+..--.+.+.|+++++.+.++++.+ .|..+|+-....+.+. |.. ++.++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 6677777777665 56778888888888888889999998888843 4556666555444443 222 34555
Q ss_pred HHhhC-CCCCCH-HhHHHHHHHhccc----cchhHHHHHHHHHHH
Q 045511 154 MFCGI-DVKPNA-NTLVSVLSACSSL----GSRKLGKAIHAHSLR 192 (209)
Q Consensus 154 ~~~~m-~~~p~~-~t~~~li~~~~~~----g~~~~a~~~~~~~~~ 192 (209)
..... ...|+- ..|+-+-..+... +...+|..++....+
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 55444 455544 4555555555442 333446666555444
No 146
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.93 E-value=0.0057 Score=46.80 Aligned_cols=99 Identities=6% Similarity=0.020 Sum_probs=78.6
Q ss_pred CCcccHHHHHHHHHc-----CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc----------------ccHHHHHH
Q 045511 29 PQPHILNTLLKLLTQ-----SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA----------------HAHQKGLE 87 (209)
Q Consensus 29 p~~~~~~~li~~~~~-----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 87 (209)
.|-.+|-+.+..|.. .+.++-....++.|++-|+.-|..+|+.||+.+-+. .+-+.+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 345667666666653 467777888899999999999999999999988554 34578999
Q ss_pred HHHHHHHhccCccHhHHHHHHHHHHhCCCh-hhHHHHHHhc
Q 045511 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDI-FSAHQIFNSV 127 (209)
Q Consensus 88 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 127 (209)
++++|...|+.||..+--.|++.+.+.+.. .+..++.--|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 999999999999999999999999998764 3444444444
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.046 Score=43.35 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHH-HHHHHHHHh
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ-NSLLHFYVT 113 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~ 113 (209)
.++.+.+.-..++++++..++..+.-=..-|.+-|+ +.++.+..|.+.+|+++|-.+..-.+ .|..+| .-|-++|++
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 445566666778899998888887765555555554 56788889999999999876654433 345555 556679999
Q ss_pred CCChhhHHHHHHhcCCCc-HhH-HHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhH
Q 045511 114 VKDIFSAHQIFNSVVFPD-VVT-WTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTL 167 (209)
Q Consensus 114 ~g~~~~a~~~~~~~~~~~-~~~-~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~ 167 (209)
++.++.|+.++-.+..|. .++ .-.+..-|.+.+.+--|-..|+.+ -..|+..-|
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 999999999999986653 333 333446777888888888888888 667766543
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.059 Score=45.53 Aligned_cols=140 Identities=14% Similarity=0.030 Sum_probs=96.6
Q ss_pred hCCCcccHHHHHHHHHcCC-----CccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhcc--------ccHHHHHHHHHHH
Q 045511 27 KIPQPHILNTLLKLLTQSS-----TPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLA--------HAHQKGLEIHAHV 92 (209)
Q Consensus 27 ~~p~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~--------~~~~~a~~~~~~m 92 (209)
...+...|..++.+..... +.+.|..+|++..+. .||- ..|..+..++... .++..+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3356689999999866432 366899999999885 3653 4444433333221 1222333333332
Q ss_pred HHh-ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHH
Q 045511 93 IKY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLV 168 (209)
Q Consensus 93 ~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~ 168 (209)
... ....+..+|..+--.....|++++|...+++.. .|+...|..+-+.+...|+.++|.+.|.+. .+.|...||-
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 222 233455778777666777899999999999983 478889999999999999999999999887 7788777764
No 149
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.046 Score=42.38 Aligned_cols=161 Identities=9% Similarity=-0.020 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHH-HHHHHH
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS-LLHFYV 112 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-ll~~~~ 112 (209)
+++++..+.+..++++|.+++..-.++.- .+....+.+-..|-...++..|-+.++++.... |...-|.. --.++-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 45555556666666666666655555431 244555555555556666666666665554432 22211111 011222
Q ss_pred hC----------------------------------CChhhHHHHHHhcC-CCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 113 TV----------------------------------KDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 113 ~~----------------------------------g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
+. +++..+..+.++.+ +.+..+.+..-....+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 33 44444444444443 23444444444556789999999999998
Q ss_pred C----CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCc
Q 045511 158 I----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 158 m----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
. |..| ...|+..+..| +.|+.+.|....+++.++|+.-.+
T Consensus 170 AlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 170 ALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 8 6665 46788888777 568899999999999999876544
No 150
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.052 Score=42.08 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=101.0
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhC-CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCc-----------
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNC-PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH----------- 99 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~----------- 99 (209)
.+.+..-....+.|+.+.|.+-|+...+- |..|- ..|+..+..| +.|+.+.|.+...++.++|++.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 34444444455788999999988888775 45544 6788877665 5678888999999999888641
Q ss_pred --cH--------hHHHHHHH-------HHHhCCChhhHHHHHHhcCC-----CcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 100 --DI--------FIQNSLLH-------FYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 100 --~~--------~~~~~ll~-------~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
|+ ..-+.++. .+.+.|+.+.|.+.+-.|+. .|.+|.+.+.-.-. .+++.+..+-++=
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQF 301 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHH
Confidence 21 11233333 34566899999999999953 46667666543332 2333333333332
Q ss_pred C-CCCCC-HHhHHHHHHHhccccchhHHHHHHHH
Q 045511 158 I-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 158 m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
+ ++.|= ..||..++-.||+..-++.|-.++.+
T Consensus 302 LL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 45553 36888888888888888888888764
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.87 E-value=0.06 Score=47.24 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=88.5
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
.+++...|++...++.+.++..|-..++.+++ +.|.|+.++|..+++.....+.. |..|...+-..|...+..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 45666677777777777664433334444433 35889999999999998887765 8899999999999999999999
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChh----hHHHHHHhcC
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF----SAHQIFNSVV 128 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~----~a~~~~~~~~ 128 (209)
.+|+...+. .|+......+..+|.|.+++. .|.+++...+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999988765 467888888888888887654 4566665554
No 152
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.0061 Score=42.24 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHH-----HhccCCCchhH
Q 045511 133 VTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSL-----RNLNENNIILD 202 (209)
Q Consensus 133 ~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 202 (209)
.+...++..+...|++++|......+ ...| |...|..+|.++...|+...|.++|..+. +.|+.|++.+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667778888999999999999999 6666 56789999999999999999999999653 34999988764
No 153
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.78 E-value=0.12 Score=46.72 Aligned_cols=186 Identities=7% Similarity=-0.080 Sum_probs=115.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCC-----Cc--ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH----HHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIP-----QP--HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH----YTFTQALKA 75 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p-----~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~ll~~ 75 (209)
..++.+++...+.++.+.....+ .. .....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 34555666666665544432211 11 11122223445789999999999987653111121 234555556
Q ss_pred HhccccHHHHHHHHHHHHHhccC---c--cHhHHHHHHHHHHhCCChhhHHHHHHhcCC-------C----cHhHHHHHH
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHL---H--DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-------P----DVVTWTTII 139 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~---~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~li 139 (209)
+...|+++.|...+.......-. + -..++..+-..+...|++++|...+++..+ + ....+..+-
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 67889999999998877643211 1 123556667778899999999998876511 1 123344555
Q ss_pred HHHHhCCChHHHHHHHhhC-----CCCCC--HHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 140 SGLSKCGFHKEAIDMFCGI-----DVKPN--ANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m-----~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
..+...|++++|...+.+. ...|. ..++..+-......|+++.|.+.+.....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677789999999988876 22222 23444455567788999999998887644
No 154
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.77 E-value=0.038 Score=40.71 Aligned_cols=173 Identities=14% Similarity=0.045 Sum_probs=81.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
+.|+..+|.+.|..+...++..|-. .+.=.+..++-+.|+++.|...+++..+.-..-...-+...+.+.+........
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence 5566666666666666665443332 344445556666666666666666655432111112233333333222211111
Q ss_pred HHHHHHHHHhc---cCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCC
Q 045511 86 LEIHAHVIKYG---HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVK 161 (209)
Q Consensus 86 ~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~ 161 (209)
. ..+.. ..--...+..++.-|=.+....+|.+.+..+...=...--.+.+-|.+.|.+..|..-|+.+ .--
T Consensus 97 ~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 97 L-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp H------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred h-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0 00000 00012244455555555555555555544442211111122456788888888888888877 223
Q ss_pred CCH----HhHHHHHHHhccccchhHHH
Q 045511 162 PNA----NTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 162 p~~----~t~~~li~~~~~~g~~~~a~ 184 (209)
|++ ...-.++.++.+.|..+.+.
T Consensus 172 p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 172 PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 333 45677778888888776443
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.16 Score=38.46 Aligned_cols=160 Identities=9% Similarity=0.045 Sum_probs=116.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHH-HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA-LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
..|..++-+....|+.+.|..-+++++.+- |+..-...+ --.+-..|+.++|.++++.+++.. +.|.+++-.=+..
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHH
Confidence 677888888888999999999999988763 433221111 112234588999999999999887 7788888877777
Q ss_pred HHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhH-HHHHHHhc---cccchhH
Q 045511 111 YVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTL-VSVLSACS---SLGSRKL 182 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~-~~li~~~~---~~g~~~~ 182 (209)
.-..|.--+|.+-+.+.- -.|...|.-+-.-|...|++++|.-.+.++ -+.|-...| ..+-..+. ...+.+.
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 777787777766665542 258889999999999999999999999999 667766543 33333332 2345667
Q ss_pred HHHHHHHHHHhc
Q 045511 183 GKAIHAHSLRNL 194 (209)
Q Consensus 183 a~~~~~~~~~~~ 194 (209)
+...+....+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 777777665554
No 156
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.72 E-value=0.13 Score=46.45 Aligned_cols=188 Identities=11% Similarity=0.007 Sum_probs=120.7
Q ss_pred hccCCCcchHhHHHHHHHHhhC--CC----cccHHHHHHHHHcCCCccchHHHHHHhhhCC--CCC--CHHHHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKI--PQ----PHILNTLLKLLTQSSTPQNAIPLYNKMLNCP--SSY--NHYTFTQALKAC 76 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~--p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p--~~~t~~~ll~~~ 76 (209)
..|+.+.+...+.+..+..... ++ ...+..+-..+...|++++|...+++..... ..+ ....+..+-...
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 5677777777777766654321 11 1233444455667799999999988875421 112 233444455667
Q ss_pred hccccHHHHHHHHHHHHHhccCcc-HhHH-----HHHHHHHHhCCChhhHHHHHHhcCCCc---H----hHHHHHHHHHH
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHLHD-IFIQ-----NSLLHFYVTVKDIFSAHQIFNSVVFPD---V----VTWTTIISGLS 143 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~~~-~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~---~----~~~~~li~~~~ 143 (209)
...|+.+.|.+.++......-... ...+ ...+..+...|+.+.|.+++.....+. . ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999999888754321111 1111 112344566899999999987764322 1 11345667888
Q ss_pred hCCChHHHHHHHhhC-------CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 144 KCGFHKEAIDMFCGI-------DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m-------~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
..|++++|...+.+. |..++. .+...+-.++.+.|+.++|...+....+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999998887 333332 456666677889999999999998776553
No 157
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.69 E-value=0.13 Score=43.16 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHH-HhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCC-cHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 82 HQKGLEIHAHVI-KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFP-DVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 82 ~~~a~~~~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
+..+.++|-++. +.+..+|+.++..|=-.|--.|+++.|...|+.. .+| |...||-|=-.+++..+.++|++-|++
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 344445544443 4444577778888888888999999999999987 445 677999999999999999999999999
Q ss_pred C-CCCCCHH-h-HHHHHHHhccccchhHHHHHHHHH
Q 045511 158 I-DVKPNAN-T-LVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 158 m-~~~p~~~-t-~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
. .++|+-+ . || |--+|...|.+++|...|-..
T Consensus 490 ALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHH
Confidence 9 9999874 3 54 455678999999988776643
No 158
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.64 E-value=0.12 Score=35.52 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
.....+|..+.+.+.......+++.+...|. .+....+.++..|++.+.- ...+.+.. ..+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~-~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQ-KEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHH-HHHHHHHh------ccccCCHHHHHHHH
Confidence 3445566666666666666666666655552 4555566666666554332 12222221 12233333455555
Q ss_pred HhCCChhhHHHHHHhc
Q 045511 112 VTVKDIFSAHQIFNSV 127 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~ 127 (209)
.+.+.++++.-++..+
T Consensus 80 ~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 80 EKAKLYEEAVELYKKD 95 (140)
T ss_pred HHcCcHHHHHHHHHhh
Confidence 5555555555555554
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.60 E-value=0.32 Score=40.80 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=76.7
Q ss_pred cchHHHHHHhhhCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCc-cHhHHHHHHHHHHhCCChhhHHHHHH
Q 045511 48 QNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFN 125 (209)
Q Consensus 48 ~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 125 (209)
+.....++++...- ..|+ -+|...|+...+..-++.|..+|....+.+..+ .+.++++++..||. ++.+-|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 34444444444332 3333 446666666666666666666666666665444 55666666666654 34555566654
Q ss_pred hc-C-CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCH--HhHHHHHHHhccccchhHHHHHHHHH
Q 045511 126 SV-V-FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA--NTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 126 ~~-~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
-= . -+| ..--...++-+...++=..+..+|.+. ++.||. ..|..+|..-+.-||++-+..+-+++
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 32 1 122 222244555555556666666666665 334433 45666666666666666666655544
No 160
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.22 Score=38.09 Aligned_cols=136 Identities=16% Similarity=0.084 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC----CCcHhHHHHHH---
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV----FPDVVTWTTII--- 139 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li--- 139 (209)
...+.++..+...+.+......+....+...+.++.....|.+.-...||.+.|...|++.. ..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44566777777788888899999999998878899999999999999999999999999663 23444444443
Q ss_pred --HHHHhCCChHHHHHHHhhC-CCCCCHHhH-H--HHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 140 --SGLSKCGFHKEAIDMFCGI-DVKPNANTL-V--SVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 140 --~~~~~~g~~~~a~~~~~~m-~~~p~~~t~-~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
..|.-++++..|...|.+. ...|....+ | +++.. -.|+...|....+.|+.. .|.+.+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll--Ylg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL--YLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH--HHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3455677899999999888 333333222 2 23333 458999999998888766 66666655543
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.57 E-value=0.0069 Score=35.58 Aligned_cols=49 Identities=6% Similarity=-0.086 Sum_probs=20.3
Q ss_pred hccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.+.|++++|...|+...+.. +-+...+..+-.++...|++++|...|++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444433 22333444444444444444444444443
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.56 E-value=0.32 Score=40.78 Aligned_cols=147 Identities=10% Similarity=0.094 Sum_probs=114.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
-+|..+|+.-.+..-++.|..+|.+..+.+..+ .+..++++|..+|. ++.+-|..+|+.=++. ..-++.--+..++.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 688999999999999999999999999999877 88999999999886 4567889998754433 23445556788999
Q ss_pred HHhCCChhhHHHHHHhcCC------CcHhHHHHHHHHHHhCCChHHHHHHHhhC--C----CCCCHHhHHHHHHHhcccc
Q 045511 111 YVTVKDIFSAHQIFNSVVF------PDVVTWTTIISGLSKCGFHKEAIDMFCGI--D----VKPNANTLVSVLSACSSLG 178 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~----~~p~~~t~~~li~~~~~~g 178 (209)
+...++-..++.+|+.... .....|+.+|.-=.+-|+...+.++-+++ - ..|...+-..+++-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 9999999999999998832 24579999999999999999999998888 2 3333334444555554444
Q ss_pred ch
Q 045511 179 SR 180 (209)
Q Consensus 179 ~~ 180 (209)
..
T Consensus 525 ~~ 526 (656)
T KOG1914|consen 525 LY 526 (656)
T ss_pred cc
Confidence 43
No 163
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.53 E-value=0.043 Score=46.65 Aligned_cols=166 Identities=12% Similarity=0.159 Sum_probs=122.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.+........|+.+.+..+..-...+|...+....+.+-++-+..++++..+- +...-+-.|..+++.+++++|-
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 445555555666666666555455689999999888889999999999999772 3344778888899999999999
Q ss_pred HHHHHHHHhc------cCccHhHHHHHHHHHHhCCChh---hHHHHHHhcCC--Cc--HhHHHHHHHHHHhCCChHHHHH
Q 045511 87 EIHAHVIKYG------HLHDIFIQNSLLHFYVTVKDIF---SAHQIFNSVVF--PD--VVTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 87 ~~~~~m~~~g------~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~ 153 (209)
+.+..++... -+.+-..|+.+.+...++.+.. ....++..+.. +| -..|++|.+-|.+.|++++|.+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9888776432 2456678998888888876544 44555665532 44 4689999999999999999999
Q ss_pred HHhhC-CCCCCHHhHHHHHHHhcc
Q 045511 154 MFCGI-DVKPNANTLVSVLSACSS 176 (209)
Q Consensus 154 ~~~~m-~~~p~~~t~~~li~~~~~ 176 (209)
+|.+- .......-|+.+.++|+.
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHH
Confidence 99886 334455567777777764
No 164
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.46 E-value=0.065 Score=43.85 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=110.4
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
..+|+.+|+...+..-++.|..+|-+..+.| +.+++..++++|..++. |+...|..+|+.=... ++-+..--+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4788899999999999999999999999999 77899999999998865 5566688887643332 2333444577888
Q ss_pred HHHhCCChhhHHHHHHhcCC---Cc--HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhcc
Q 045511 110 FYVTVKDIFSAHQIFNSVVF---PD--VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSS 176 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~ 176 (209)
.+++.++-..|..+|+.-.+ .+ ...|..+|+-=..-|+...+..+=++| .+-|-..+...+..-|+-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~i 547 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhh
Confidence 99999999999999986532 23 457889998888889988888777777 566666666666665543
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.45 E-value=0.094 Score=35.18 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=70.2
Q ss_pred HHHhccccHHHHHHHHHHHHHhccCcc--HhHHHHHHHHHHhCCChhhHHHHHHhcC--CCc----HhHHHHHHHHHHhC
Q 045511 74 KACSLAHAHQKGLEIHAHVIKYGHLHD--IFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD----VVTWTTIISGLSKC 145 (209)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~----~~~~~~li~~~~~~ 145 (209)
.++-..|+.++|..+|+...+.|.... ...+-.+-..|...|++++|..++++.. .|+ ....-.+-.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 345677999999999999999886654 3355567778889999999999998873 243 22222334577889
Q ss_pred CChHHHHHHHhhCCCCCCHHhHHHHHHHhc
Q 045511 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACS 175 (209)
Q Consensus 146 g~~~~a~~~~~~m~~~p~~~t~~~li~~~~ 175 (209)
|++++|.+.+-.. +.++...|.--|..|+
T Consensus 89 gr~~eAl~~~l~~-la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 89 GRPKEALEWLLEA-LAETLPRYRRAIRFYA 117 (120)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999998887553 3334445555555553
No 166
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.062 Score=45.14 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=21.5
Q ss_pred hCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+.+..++|.+.++...+.+..+-..--..+.+.|++++|+.+|+.+
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555555433333333333334444555555555555554
No 167
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.34 E-value=0.035 Score=32.85 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC-ChhhHHHHHHh
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNS 126 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~ 126 (209)
..+|..+-..+...|+++.|...|+...+.. +.+...|..+-.+|.+.| ++++|.+.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3445555555566666666666666665543 334455666666666666 46666665554
No 168
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.32 E-value=0.013 Score=35.74 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhcC-------C--Cc-HhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV-------F--PD-VVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~--~~-~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
.+|+.+-..|...|++++|...|++.. . |+ ..+++.+-..|...|++++|++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555566666665555555431 0 11 2344444444444444444444443
No 169
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.31 E-value=0.35 Score=43.49 Aligned_cols=147 Identities=11% Similarity=0.069 Sum_probs=103.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
.++-.+..+|-+.|+.+++...|+++.+.. +-|....|.+-..++.. ++++|.+.+....+. |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 566777888888999999999999999987 46788899999999998 999999998877665 4
Q ss_pred HhCCChhhHHHHHHhcCC-----------------------CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHh
Q 045511 112 VTVKDIFSAHQIFNSVVF-----------------------PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANT 166 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t 166 (209)
....++.++++++.++.. .-+.++--+-..|-..++|+++..+++.+ ...| |...
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 555555555555555421 22344455557778888999999999999 6665 4456
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
..-++.+|. +.+..-..+=+.++..|+.-
T Consensus 260 ~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 260 REELIRFYK--EKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred HHHHHHHHH--HHccCcchHHHHHHHhcccc
Confidence 666776665 44433222323344445443
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.30 E-value=0.021 Score=33.47 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=25.8
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 94 (209)
.+.+.|++++|...|++..+.. +-+...+..+-..+...|++++|...|+...+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555543 11334444444455555555555555555443
No 171
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.27 E-value=0.034 Score=42.76 Aligned_cols=89 Identities=4% Similarity=0.015 Sum_probs=59.5
Q ss_pred HHHHHhcC--CCcHhHHHHHHHHHHhC-----CChHHHHHHHhhC---CCCCCHHhHHHHHHHhccc-------------
Q 045511 121 HQIFNSVV--FPDVVTWTTIISGLSKC-----GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL------------- 177 (209)
Q Consensus 121 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m---~~~p~~~t~~~li~~~~~~------------- 177 (209)
++.|.... ++|..+|-..+..+... ++++-....++.| |+.-|..+|+.||+.+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455543 45666666666555433 4555555555555 7777778887777776554
Q ss_pred ---cchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 178 ---GSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 178 ---g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
.+-+-+..++++|..+|+.||..+-..||.++
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 23456778889999999999988888777653
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.21 E-value=0.29 Score=35.48 Aligned_cols=103 Identities=11% Similarity=-0.003 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-----CcHhHHH
Q 045511 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWT 136 (209)
Q Consensus 62 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 136 (209)
+.|++..--.+-.+....|+..+|...|++-...-+-.|....-.+-++....+++.+|...++.+-+ .+..+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555556666666666666666666665544555566666666666666666666666655511 1112222
Q ss_pred HHHHHHHhCCChHHHHHHHhhC-CCCCCH
Q 045511 137 TIISGLSKCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
.+-+.|...|.+.+|+.-|... ..-|+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 4445566666666666666555 444444
No 173
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.17 E-value=0.052 Score=46.64 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=110.4
Q ss_pred hcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhC-----C-CC------------
Q 045511 3 VNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC-----P-SS------------ 63 (209)
Q Consensus 3 i~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~------------ 63 (209)
|.|+ ..|+...|.....+..+ ..|+...|..+-+...+-.-++.|.++.+..... | ..
T Consensus 431 i~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKH 507 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHH
Confidence 3455 55555555544444333 4578888888877776666666666666544321 1 00
Q ss_pred ---------CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc-HhHHHHHHHHHHhCCChhhHHHHHHhcCC---C
Q 045511 64 ---------YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVF---P 130 (209)
Q Consensus 64 ---------p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~ 130 (209)
.-..||=..=.+..+.++.+.+.+.|-.... ..|| ...||++=.+|.+.|+-.+|...+.+.-+ .
T Consensus 508 le~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 508 LERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 1112232233333455677777777766654 3455 56999999999999999999999988743 4
Q ss_pred cHhHHHHHHHHHHhCCChHHHHHHHhhC----CCCCCHHhHHHHHHHhcc
Q 045511 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSS 176 (209)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~p~~~t~~~li~~~~~ 176 (209)
+...|-..+....+-|.+++|++.++++ ....|......++..-.+
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 5567888888899999999999999999 222355555555555443
No 174
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.17 E-value=0.0013 Score=45.53 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=39.5
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
+|..+.+.+.+.....+++.+...+..-+....+.++..|++.++.+...++++ ..+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 445555555555555555555555444445555555666655555444444443 1111223344444444444
Q ss_pred hhhHHHHHHh
Q 045511 117 IFSAHQIFNS 126 (209)
Q Consensus 117 ~~~a~~~~~~ 126 (209)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 175
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.14 E-value=0.14 Score=44.48 Aligned_cols=110 Identities=9% Similarity=0.100 Sum_probs=68.6
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
.|.+-..+..+..|..+++.+..... -..-|..+-..|+..|+++.|+++|-+ ...++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhcccc
Confidence 34455567777888888877776543 223366677777788888877777643 2345666777788888
Q ss_pred hhhHHHHHHhcCCC--cHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 117 IFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 117 ~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
+++|.++-.+...| ....|-+-..-+-.+|++.+|.++|-.
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 88777777766433 344454444445555555555544443
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.13 E-value=0.11 Score=40.23 Aligned_cols=143 Identities=14% Similarity=0.096 Sum_probs=101.9
Q ss_pred HHHHHHHhhCCCc---ccHHHHHHHHHcCCC-------ccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 045511 19 NQIHAQIIKIPQP---HILNTLLKLLTQSST-------PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88 (209)
Q Consensus 19 ~~~~~~~~~~p~~---~~~~~li~~~~~~g~-------~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 88 (209)
+.+...|...++. ...+.++.++-+..+ ..+...+=++++.+|= -..+.+++.+|.+.
T Consensus 36 qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eGN------------~~m~~~~Y~eAv~k 103 (304)
T KOG0553|consen 36 QCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEILTPEEDKALAESLKNEGN------------KLMKNKDYQEAVDK 103 (304)
T ss_pred HHHHHHhCcchhhccccccccHHHHHHHhccCcccccChHhHHHHHHHHHHHHH------------HHHHhhhHHHHHHH
Confidence 3444445444433 444556666655544 1124444555555541 24677899999999
Q ss_pred HHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH
Q 045511 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 89 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
|.+.++-. +.|++-|..=-.+|++.|.++.|.+-.+.... | ...+|..|=.+|...|++++|.+.|++- .+.|+-
T Consensus 104 Y~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 104 YTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 99888764 56778888888999999999999888877643 3 3568999999999999999999999888 999999
Q ss_pred HhHHHHHHHh
Q 045511 165 NTLVSVLSAC 174 (209)
Q Consensus 165 ~t~~~li~~~ 174 (209)
.+|-.=|+..
T Consensus 183 e~~K~nL~~A 192 (304)
T KOG0553|consen 183 ESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHH
Confidence 8887666554
No 177
>PLN02789 farnesyltranstransferase
Probab=96.12 E-value=0.51 Score=37.43 Aligned_cols=175 Identities=9% Similarity=0.021 Sum_probs=118.2
Q ss_pred CcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCc--cchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 045511 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTP--QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIH 89 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 89 (209)
++++..+.++.+.. +.+..+|+..-..+.+.|+. +++..+++++.+.+- -|...|+..-.++.+.|+++++.+.+
T Consensus 89 ~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 89 EEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555555555442 23446777665555566653 677888988887653 47788888888888999999999999
Q ss_pred HHHHHhccCccHhHHHHHHHHHHhC---CCh----hhHHHHHHhcC--C-CcHhHHHHHHHHHHhC----CChHHHHHHH
Q 045511 90 AHVIKYGHLHDIFIQNSLLHFYVTV---KDI----FSAHQIFNSVV--F-PDVVTWTTIISGLSKC----GFHKEAIDMF 155 (209)
Q Consensus 90 ~~m~~~g~~~~~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~--~-~~~~~~~~li~~~~~~----g~~~~a~~~~ 155 (209)
+.+++.. +.|...|+.....+.+. |.. +++.....+.. . .|...|+-+-..+... ++..+|.+.+
T Consensus 166 ~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 166 HQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 9999886 45667777766655554 222 34555554442 2 4667888777777663 3345687888
Q ss_pred hhC-CCCC-CHHhHHHHHHHhcccc------------------chhHHHHHHHHH
Q 045511 156 CGI-DVKP-NANTLVSVLSACSSLG------------------SRKLGKAIHAHS 190 (209)
Q Consensus 156 ~~m-~~~p-~~~t~~~li~~~~~~g------------------~~~~a~~~~~~~ 190 (209)
.+. ...| +......++..|+... ..++|..+++.+
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 776 4444 5567888888887643 236788888877
No 178
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.11 E-value=0.25 Score=33.80 Aligned_cols=124 Identities=12% Similarity=0.136 Sum_probs=84.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCCh
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFH 148 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 148 (209)
...++..+.+.+........++.+.+.+ ..+....|.++..|++.+. .+..+.+.. ..+......+++.|-+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 4567777777788889999999888877 4778899999999998743 444455552 34555566688888888899
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhh
Q 045511 149 KEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207 (209)
Q Consensus 149 ~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 207 (209)
+++..++.++|...+ ....+++ ..++++.|.++...- .++..|..+++
T Consensus 86 ~~~~~l~~k~~~~~~--Al~~~l~---~~~d~~~a~~~~~~~------~~~~lw~~~~~ 133 (140)
T smart00299 86 EEAVELYKKDGNFKD--AIVTLIE---HLGNYEKAIEYFVKQ------NNPELWAEVLK 133 (140)
T ss_pred HHHHHHHHhhcCHHH--HHHHHHH---cccCHHHHHHHHHhC------CCHHHHHHHHH
Confidence 999999988743322 2223333 227788887776541 13445555554
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.08 E-value=0.09 Score=40.42 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=67.3
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcH----hHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC----HHhHHH
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDV----VTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN----ANTLVS 169 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~----~~t~~~ 169 (209)
...|+..+..+.+.|++++|...|+.+. .|+. ..+--+-..|...|++++|...|..+ ...|+ ...+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3467777777677899999999998883 2432 35556668888899999999999888 44444 233333
Q ss_pred HHHHhccccchhHHHHHHHHHHHh
Q 045511 170 VLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+...+...|+.++|..+++.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566889999999999888776
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.07 E-value=0.16 Score=39.48 Aligned_cols=159 Identities=13% Similarity=0.148 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhh----CCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHH----hccCcc--
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLN----CPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIK----YGHLHD-- 100 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~-- 100 (209)
..|+..-..|-..|++++|...|.+... .+-+. -...|......+-+. +++.|.+.++...+ .| .|+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 4566666666677777777777766532 12111 123344444444333 66666666655443 23 222
Q ss_pred HhHHHHHHHHHHhC-CChhhHHHHHHhcC------C-C--cHhHHHHHHHHHHhCCChHHHHHHHhhC--------CCCC
Q 045511 101 IFIQNSLLHFYVTV-KDIFSAHQIFNSVV------F-P--DVVTWTTIISGLSKCGFHKEAIDMFCGI--------DVKP 162 (209)
Q Consensus 101 ~~~~~~ll~~~~~~-g~~~~a~~~~~~~~------~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m--------~~~p 162 (209)
..++..+-..|-.. |++++|.+.|.+.. . + -...+.-+...+.+.|++++|.++|.+. ..++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 34666677777777 78887777776651 1 1 1345666677778888888888888776 1122
Q ss_pred CHH--hHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 163 NAN--TLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 163 ~~~--t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+.. .+..+| ++...||+..|...++.....
T Consensus 194 ~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 194 SAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 332 223333 333457777777777765433
No 181
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.05 E-value=0.029 Score=34.19 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhc--cC---cc-HhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYG--HL---HD-IFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~---~~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.+|+.+-..+...|++++|.+.|+...+.. .. |+ ..+++.+-..|...|++++|++.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567778888888888888888888776441 11 22 56788888999999999999998875
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.04 E-value=0.13 Score=36.02 Aligned_cols=82 Identities=9% Similarity=-0.090 Sum_probs=43.9
Q ss_pred HhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHH
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAI 152 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~ 152 (209)
+...|++++|+.+|+.+..-. +-+..-|-.|-.++-..|++++|...|... ...|...+=.+-.++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 345566666666666555443 233444555555555566666666666554 1123444444455555666666666
Q ss_pred HHHhhC
Q 045511 153 DMFCGI 158 (209)
Q Consensus 153 ~~~~~m 158 (209)
+-|+..
T Consensus 124 ~aF~~A 129 (157)
T PRK15363 124 KALKAV 129 (157)
T ss_pred HHHHHH
Confidence 666554
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.03 E-value=0.022 Score=33.80 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhcccc-chhHHHHHHHHH
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLG-SRKLGKAIHAHS 190 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g-~~~~a~~~~~~~ 190 (209)
.|..+-..+...|++++|+..|.+. .+.|+. ..|..+-.++...| ++++|.+.++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3444444444445555555444444 333322 23444444444444 444444444443
No 184
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.72 Score=37.60 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=19.2
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhh
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLN 59 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 59 (209)
|++....+-..+...|+.++|...|+.-..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 445566666666666666666666666555
No 185
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.92 E-value=0.0037 Score=43.21 Aligned_cols=85 Identities=12% Similarity=0.158 Sum_probs=63.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHH
Q 045511 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150 (209)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 150 (209)
.+++.+.+.+.++....+++.+...+...+....+.++..|++.++.+..++++..... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777888888888999998877677899999999999999998999999885432 333455666666666666
Q ss_pred HHHHHhhC
Q 045511 151 AIDMFCGI 158 (209)
Q Consensus 151 a~~~~~~m 158 (209)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666666
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.84 E-value=0.2 Score=38.51 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--HhHHHHHHHHHHhCCChhhHHHHHHhcCC--Cc----HhHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PD----VVTWTT 137 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~ 137 (209)
...|...+....+.|++++|...|+.+.+.-.... ...+--+-..|...|++++|...|..+.. |+ ...+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 35577777666777999999999999987652211 24666777888999999999999998842 32 233334
Q ss_pred HHHHHHhCCChHHHHHHHhhC-CCCCCHH
Q 045511 138 IISGLSKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
+...+...|++++|..+|+++ ...|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 456677889999999999887 4445543
No 187
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.78 E-value=0.25 Score=40.61 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCCcHhHH-HHHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTW-TTIISG 141 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~-~~li~~ 141 (209)
...|...|++..+..-++.|..+|....+.| +.+++.+++++|..++. |+..-|.++|+-= .-||...| +-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4678889999999999999999999999999 78899999999998875 5677788888653 23555444 567778
Q ss_pred HHhCCChHHHHHHHhhC--CCCCC--HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 142 LSKCGFHKEAIDMFCGI--DVKPN--ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 142 ~~~~g~~~~a~~~~~~m--~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+.+.++-+.|..+|..- .+.-+ ...|..+|..-+.-|++..+..+-+++...
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 88899999999999855 34444 468999999999999998887776665443
No 188
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.77 E-value=0.3 Score=38.25 Aligned_cols=120 Identities=10% Similarity=0.066 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHh--CC----ChhhHHHHHHhcC-------CCcHhHHHHHHHHHHhCCCh
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT--VK----DIFSAHQIFNSVV-------FPDVVTWTTIISGLSKCGFH 148 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~ 148 (209)
++....+++.|.+.|+..+..+|-+..-.... .. ....|..+++.|. .++-.++.+++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566667777777777776655543333332 11 2456677777773 2455566666554 33333
Q ss_pred H----HHHHHHhhC---CCCCCHH--hHHHHHHHhccccc--hhHHHHHHHHHHHhccCCCchhHh
Q 045511 149 K----EAIDMFCGI---DVKPNAN--TLVSVLSACSSLGS--RKLGKAIHAHSLRNLNENNIILDN 203 (209)
Q Consensus 149 ~----~a~~~~~~m---~~~p~~~--t~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~ 203 (209)
+ .++.+|+.+ |+..+.. ..+.++..+....+ ..++.++++.+.+.|+++...+|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 2 345555555 5555433 34444444433332 346677777777777777666554
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.77 E-value=0.047 Score=32.68 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=5.2
Q ss_pred ccHHHHHHHHHHHH
Q 045511 80 HAHQKGLEIHAHVI 93 (209)
Q Consensus 80 ~~~~~a~~~~~~m~ 93 (209)
++++.|.++++.+.
T Consensus 9 ~~~~~A~~~~~~~l 22 (73)
T PF13371_consen 9 EDYEEALEVLERAL 22 (73)
T ss_pred CCHHHHHHHHHHHH
Confidence 33333333333333
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.70 E-value=0.18 Score=35.42 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=33.8
Q ss_pred HhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHH
Q 045511 112 VTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~ 186 (209)
...|++++|+++|.-.. .| +..-|-.|--++-..|++++|+..|... -+.||. ..+-.+-.++...|+.+.|++-
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 34455555555554441 12 2223333333444444555555555444 333322 3333344444444555555544
Q ss_pred HHHH
Q 045511 187 HAHS 190 (209)
Q Consensus 187 ~~~~ 190 (209)
|+..
T Consensus 126 F~~A 129 (157)
T PRK15363 126 LKAV 129 (157)
T ss_pred HHHH
Confidence 4433
No 191
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.19 Score=40.72 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=74.6
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHH-HHHHHhC-CC
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL-LHFYVTV-KD 116 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~-g~ 116 (209)
+.+.+.|+++.|.=.|+...... +-+..+|.-++..|...|++.+|.-.-.+..+. ++.+..+.+.+ -..+.-. ..
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchh
Confidence 34455666666666666655421 124466666666666666666655443333222 22334444333 1222222 12
Q ss_pred hhhHHHHHHhc--CCCc-HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHH
Q 045511 117 IFSAHQIFNSV--VFPD-VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 117 ~~~a~~~~~~~--~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
-++|.+++++- .+|+ ....+.+...+...|..++++.++.+- -..||...-+.+-....-...+.++.+.|.
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34555555554 2233 334455555556666666666666555 455555555555555555555555544443
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.61 E-value=0.25 Score=38.34 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccC-----ccHh-HHHHHHHHHHhCCChhhHHHHHHhcCC--C------cHh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHL-----HDIF-IQNSLLHFYVTVKDIFSAHQIFNSVVF--P------DVV 133 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-----~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~--~------~~~ 133 (209)
++..+...+.+.|++++|.++|+.....-.. .+.. .+-..+-++...||+..|.+.+++... | ...
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445555666667777777777666544321 1221 222333355556677777777666521 1 123
Q ss_pred HHHHHHHHHHhC--CChHHHHHHHhhC
Q 045511 134 TWTTIISGLSKC--GFHKEAIDMFCGI 158 (209)
Q Consensus 134 ~~~~li~~~~~~--g~~~~a~~~~~~m 158 (209)
.-..||.++-.. ..++.++.-|+.+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 445555555332 2344555555555
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.51 E-value=0.2 Score=44.17 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=93.5
Q ss_pred HcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHH--hccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhh
Q 045511 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC--SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119 (209)
Q Consensus 42 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 119 (209)
...+++..|.+....+.+.- || ..|..+++++ .+.|+.++|..+++....-+. .|..|...+..+|-..|..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 34567788888887776642 55 4577777776 577899999988888776553 388999999999999999999
Q ss_pred HHHHHHhcC--CCcHhHHHHHHHHHHhCCChHH----HHHHHhhCCCCCCHHhHHHHHHHh
Q 045511 120 AHQIFNSVV--FPDVVTWTTIISGLSKCGFHKE----AIDMFCGIDVKPNANTLVSVLSAC 174 (209)
Q Consensus 120 a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~p~~~t~~~li~~~ 174 (209)
|..+++... .|+......+..+|.+.+++.+ |.++++.. .-+...|-++++..
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHH
Confidence 999999984 4776677777888888887764 56666653 33345555555544
No 194
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=1.9 Score=39.32 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=59.1
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhc
Q 045511 132 VVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208 (209)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 208 (209)
...|+-+-++-.+.|.+.+|.+-|-+ .-|...|.-+++.+.+.|++++-...+.+.++..-+|.+. +.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 45788999999999999999888866 4567889999999999999999999998888887777754 344433
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.31 E-value=0.75 Score=33.45 Aligned_cols=145 Identities=13% Similarity=0.127 Sum_probs=100.9
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
...|++.+ .++.+.+...|++..=-.|-.++.+.|+..+|...|++-..--+.-|....-.+-++....+++..+..
T Consensus 69 ~ldP~R~~---Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 69 KLDPERHL---REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred hcChhHHH---HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 44444444 555556666688877777888999999999999999998876666777878888888888899999999
Q ss_pred HHHHHHHhcc-CccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHH
Q 045511 88 IHAHVIKYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMF 155 (209)
Q Consensus 88 ~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 155 (209)
.++.+-+... ..++.+.-.+-+.|...|..++|+.-|+... -|+...---.-..+++.|+.+++..-+
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 9998877651 1122334455677888899999999888763 244433333334455666666554333
No 196
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.27 E-value=0.45 Score=30.74 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=43.0
Q ss_pred chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 49 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+..+-++.+....+.|+.....+.|++|.+.+++..|..+|+.++.+- .....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445567777888899999999999999999999999999999887553 222337777764
No 197
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.21 E-value=1.5 Score=39.09 Aligned_cols=154 Identities=10% Similarity=-0.007 Sum_probs=80.6
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhC-CC--------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCc
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC-PS--------SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~--------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 99 (209)
....+|..+.+.|.+..++|-|.--+-.|... |. .|+ .+=..+--.....|.+++|+.+|..-++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 44567888888888887777666555555331 11 122 11112222224556777777776665543
Q ss_pred cHhHHHHHHHHHHhCCChhhHHHHHHhcCCCc-HhHHHHHHHHHHhCCChHHHHHHHhhC--------------------
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD-VVTWTTIISGLSKCGFHKEAIDMFCGI-------------------- 158 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m-------------------- 158 (209)
..|=+.|-..|++++|.++-+.-.+-. ..||.....-+-..++.+.|++.|..-
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 233345555666666665544321111 124444444444455555555444433
Q ss_pred --CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 159 --DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 159 --~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
....|...|.+.-+.....|+.+.|..++...++
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 2223555566666666666777777666665433
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.08 E-value=0.1 Score=31.14 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
.+.+.++++.|.+.++++...+. .+...+...-..+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34445555555555555554321 13333444444445555555555555555443
No 199
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.01 E-value=0.85 Score=32.47 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=76.8
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC--ChhhHHHHHHhcCC
Q 045511 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVF 129 (209)
Q Consensus 52 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~ 129 (209)
+.++.+.+.|++|+...|..++..+.+.|++.. +..+.+.++-+|.......+-.+.... -.+-|..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 445556667777777777777777777776543 344455555555555444443333321 1233333333322
Q ss_pred CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
..+..+++.+...|++-+|.++.+..+ ..+......++.+....+|...-..++....+++
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 235566666777888888887777641 1222333556777777777766666666655543
No 200
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.99 E-value=1.9 Score=37.05 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
+-|..+--.+-...++++|.+-|+.....+- -|...|.-+-..-++.|+++........+.+.. +.....|.....++
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQ 153 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 4444444444445666666666666655431 233444444333344444444444444443332 12234455555555
Q ss_pred HhCCChhhHHHHHHhc
Q 045511 112 VTVKDIFSAHQIFNSV 127 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~ 127 (209)
.-.|+...|..+.++.
T Consensus 154 ~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666665555544
No 201
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.98 E-value=0.63 Score=41.93 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHH--HHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS--LLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--ll~ 109 (209)
..|+.|=..|+..-+..+|.+-|+...+-+- -+..........|+...+++.|..+.-.--+.. +.....+|- .--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 5555566666655566666666666655432 344556666666677777766666621111111 001111222 222
Q ss_pred HHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHH--hccccchhHH
Q 045511 110 FYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSA--CSSLGSRKLG 183 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~--~~~~g~~~~a 183 (209)
.|.+.++.-+|..-|... ...|...|..+..+|.++|++.-|..+|.+. .++|+.. |..+-.+ -+..|++.++
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK-YGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH-HHHHHHHHHHHHhhhHHHH
Confidence 344455555555555554 2246788999999999999999999999888 7777653 3333333 2467888888
Q ss_pred HHHHHHHHH
Q 045511 184 KAIHAHSLR 192 (209)
Q Consensus 184 ~~~~~~~~~ 192 (209)
...++.+..
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 888876643
No 202
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.96 E-value=0.74 Score=31.48 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=51.1
Q ss_pred cHhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccC
Q 045511 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196 (209)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 196 (209)
+..-.+.-+..+..+|.-++-.++++++ .-+|+....-.+-.+|.+.|+..++.+++...-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445677888999999999999999887 56788899999999999999999999999999988864
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.9 Score=35.21 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=63.0
Q ss_pred CccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCC---ChHHHHHHHhhC-CCCCCHHh-HHH
Q 045511 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCG---FHKEAIDMFCGI-DVKPNANT-LVS 169 (209)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m-~~~p~~~t-~~~ 169 (209)
+-|...|--|-..|...|+.+.|..-|.+.. .+|...+..+-.++..+. ...++..+|+++ ...|+..+ ..-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4466777777778888888888877777652 245555555555554433 244677777777 66665543 444
Q ss_pred HHHHhccccchhHHHHHHHHHHHhc
Q 045511 170 VLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
+--.+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 4455667778888888887777663
No 204
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.77 E-value=0.63 Score=29.78 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=47.2
Q ss_pred chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 49 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
++.+-++.+....+.|+.....+.+++|.+.+++..|..+|+.++.+. ..+..+|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 456667777788899999999999999999999999999999887443 124557776664
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.68 E-value=1.4 Score=33.44 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHH---HHHHHHHHhCCChhhHHHHHHhcCC--C--cHhHHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ---NSLLHFYVTVKDIFSAHQIFNSVVF--P--DVVTWTTI 138 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~--~--~~~~~~~l 138 (209)
...|..-... ...|+++.|.+.|+.+...-... .... -.+..+|.+.+++++|...+++..+ | ....|--.
T Consensus 33 ~~~Y~~A~~~-~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 33 SEIYATAQQK-LQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3445555554 56899999999999998865322 2332 3456788999999999999998832 2 23345455
Q ss_pred HHHHH
Q 045511 139 ISGLS 143 (209)
Q Consensus 139 i~~~~ 143 (209)
+.|.+
T Consensus 111 ~~g~~ 115 (243)
T PRK10866 111 MRGLT 115 (243)
T ss_pred HHHHh
Confidence 55544
No 206
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.59 E-value=0.6 Score=36.22 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=75.8
Q ss_pred HHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhH
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 120 (209)
+.+++++.+|+..|.+..+-. +-|.+-|..=-.+|++.|..+.|.+--+.-++-. +....+|..|=.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 456789999999999998853 2366778888999999999988877655544432 22356899999999999999999
Q ss_pred HHHHHhc--CCCcHhHHHHHHHHH
Q 045511 121 HQIFNSV--VFPDVVTWTTIISGL 142 (209)
Q Consensus 121 ~~~~~~~--~~~~~~~~~~li~~~ 142 (209)
.+.|.+. .+|+..+|-.=++..
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999887 457766665555433
No 207
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=2.9 Score=35.65 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=104.7
Q ss_pred ccHHHHHHHHHcC--CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHH--------HHHHhccCccH
Q 045511 32 HILNTLLKLLTQS--STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHA--------HVIKYGHLHDI 101 (209)
Q Consensus 32 ~~~~~li~~~~~~--g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~--------~m~~~g~~~~~ 101 (209)
..+.+++..+.+. .....+..++....+..-.-.....-+++......|+++.|.+++. .+.+.+.. +
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P 417 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--P 417 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--h
Confidence 5566666655543 3456677776666554322223455566777788999999999998 44444444 4
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhcC------CCcHhHHHHHH----HHHHhCCChHHHHHHHhhC-C-CCCCHHhHHH
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV------FPDVVTWTTII----SGLSKCGFHKEAIDMFCGI-D-VKPNANTLVS 169 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m-~-~~p~~~t~~~ 169 (209)
.+-.+++..+.+.++-+.|-.++++.. .+.....++++ ..-.+.|+-++|..+++++ . ..+|..+...
T Consensus 418 ~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 418 GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 455678888888888888888887652 23333334443 4445679999999999999 4 5678889999
Q ss_pred HHHHhccccchhHHHHHHH
Q 045511 170 VLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 170 li~~~~~~g~~~~a~~~~~ 188 (209)
++.+|++. |+++|+.+-.
T Consensus 498 lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHhc-CHHHHHHHhh
Confidence 99999765 5777777644
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=1.8 Score=37.80 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=75.3
Q ss_pred ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhc
Q 045511 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 175 (209)
Q Consensus 96 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~ 175 (209)
|....-.+.+--+.-++..|+..+|.++-.+..-||-..|--=+.+++..++|++-+++-+.+ + +..-|..+..+|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk--k-sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK--K-SPIGYLPFVEACL 755 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc--C-CCCCchhHHHHHH
Confidence 334445567777888889999999999999999999999999999999999999998888885 2 2566777888888
Q ss_pred cccchhHHHHHHHHH
Q 045511 176 SLGSRKLGKAIHAHS 190 (209)
Q Consensus 176 ~~g~~~~a~~~~~~~ 190 (209)
+.|+.++|...+.+.
T Consensus 756 ~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRV 770 (829)
T ss_pred hcccHHHHhhhhhcc
Confidence 888888888776543
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.32 E-value=2.3 Score=34.41 Aligned_cols=161 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCC---CCCCHHHHHHHHHHHhc---cccHHHHHHHHHHHHHhccCccHhHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCP---SSYNHYTFTQALKACSL---AHAHQKGLEIHAHVIKYGHLHDIFIQNS 106 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 106 (209)
+.-.++-+|-...+++...++.+.|.... +.-....--....++-+ .|+.+.|.+++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345556888999999999999998752 11122211223334445 8899999999999776666788888877
Q ss_pred HHHHHHhC---------CChhhHHHHHHhc--CCCcHhH---HHHHHHHHHhCCC-hHHHHHH---HhhC----CC---C
Q 045511 107 LLHFYVTV---------KDIFSAHQIFNSV--VFPDVVT---WTTIISGLSKCGF-HKEAIDM---FCGI----DV---K 161 (209)
Q Consensus 107 ll~~~~~~---------g~~~~a~~~~~~~--~~~~~~~---~~~li~~~~~~g~-~~~a~~~---~~~m----~~---~ 161 (209)
+-..|-.. ...+.|...|.+- .+||..+ +-+|+........ -.+..++ +..+ |. .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 77665432 2356677777655 3344332 2233332222111 1122222 2222 22 2
Q ss_pred CCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.|-=-+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23335677889999999999999999998866
No 210
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.28 E-value=0.44 Score=36.84 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=57.6
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC--------CCCCCHHhHHH
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI--------DVKPNANTLVS 169 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--------~~~p~~~t~~~ 169 (209)
..++..++..+...|+.+.+...+++.. .-+...|-.+|.+|.+.|+...|++.|+.+ |+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4466777888888888888888888773 246778888888888888888888888877 88888877776
Q ss_pred HHHH
Q 045511 170 VLSA 173 (209)
Q Consensus 170 li~~ 173 (209)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6666
No 211
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.14 E-value=0.35 Score=37.37 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=63.7
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHH-----hccCCCchhHhH
Q 045511 132 VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLR-----NLNENNIILDNA 204 (209)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 204 (209)
..++..++..+...|+.+.+.+.++++ ...| |...|..++.+|.+.|+...|+..+..+.+ .|+.|.+.+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 457788999999999999999999999 5555 778999999999999999999999997755 488988876654
Q ss_pred hh
Q 045511 205 VL 206 (209)
Q Consensus 205 li 206 (209)
..
T Consensus 233 y~ 234 (280)
T COG3629 233 YE 234 (280)
T ss_pred HH
Confidence 43
No 212
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.96 E-value=0.94 Score=31.40 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCC-----CCCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHhccCccHhHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-----SYNHYTFTQALKACSLAHA-HQKGLEIHAHVIKYGHLHDIFIQN 105 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-----~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~ 105 (209)
...|.++...+..+++.....+++.+..-.. ..+..+|++++++.++... --.+..+|+.|++.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5678888888888999999998888854211 2456779999999977776 457888899999888899999999
Q ss_pred HHHHHHHhCC
Q 045511 106 SLLHFYVTVK 115 (209)
Q Consensus 106 ~ll~~~~~~g 115 (209)
.+|.++.+-.
T Consensus 120 ~li~~~l~g~ 129 (145)
T PF13762_consen 120 CLIKAALRGY 129 (145)
T ss_pred HHHHHHHcCC
Confidence 9998887763
No 213
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.96 E-value=3.3 Score=34.78 Aligned_cols=151 Identities=10% Similarity=0.032 Sum_probs=97.1
Q ss_pred HHHHHcCCCccchHHHHHHhhhCC-CCCCH-----HHHHHHHHHHhc----cccHHHHHHHHHHHHHhccCccHhHHHHH
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCP-SSYNH-----YTFTQALKACSL----AHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 107 (209)
+....=.|+-+.+++++.+-.+.+ +.-.. -+|..++..++. ..+.+.+.++++.+.++ -|+...|.-.
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 333344577788888877765533 33222 234555554444 34678899999999876 4666655433
Q ss_pred H-HHHHhCCChhhHHHHHHhcC-------CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHh-cc
Q 045511 108 L-HFYVTVKDIFSAHQIFNSVV-------FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSAC-SS 176 (209)
Q Consensus 108 l-~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~-~~ 176 (209)
- +.+...|++++|.+.|++.. +.....+--+.-.+....+|++|.+.|.++ .... +..+|.-+..+| ..
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3 35667899999999999652 223344445556678889999999999999 3333 344454444444 35
Q ss_pred ccch-------hHHHHHHHHH
Q 045511 177 LGSR-------KLGKAIHAHS 190 (209)
Q Consensus 177 ~g~~-------~~a~~~~~~~ 190 (209)
.|+. ++|.+++..+
T Consensus 353 l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccchhhhhhHHHHHHHHHHH
Confidence 6777 7888888765
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=2.3 Score=33.00 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh---CCChhhHHHHHHhcC--CC-cHhHHHHH
Q 045511 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVV--FP-DVVTWTTI 138 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~--~~-~~~~~~~l 138 (209)
|...|-.|=.+|...|+.+.|..-|..-.+-. .+|+..+..+-..+.. ..+..++.++|++.. +| |+.+-.-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 55666666666666666666666666555432 2333333333333222 224456666666663 22 34444555
Q ss_pred HHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHH
Q 045511 139 ISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSA 173 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~ 173 (209)
-..+...|++.+|...|..| ..-|.......+|..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 56666677777777777776 444444444444443
No 215
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.85 E-value=1.5 Score=37.14 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=82.4
Q ss_pred cchHHHHHHhh-hCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 48 QNAIPLYNKML-NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 48 ~~a~~l~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
....++|-++- +.+..+|......|=-.|-..|+++.+.+.|+..++-. +-|-.+||.|=..++...+.++|...|.+
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 34455555554 34545677777777777788899999999999998754 44678999999999999999999999998
Q ss_pred cC--CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 127 VV--FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 127 ~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.. +|+ +.+.-.|--+|.+.|.+++|...|-+.
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 83 465 334444555678899999988777554
No 216
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.82 E-value=1.7 Score=30.97 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=84.1
Q ss_pred HhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHH
Q 045511 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104 (209)
Q Consensus 25 ~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 104 (209)
.+..|+...|..+|..+.+.|+.. .+..+...++.+|.......+-.+... ...+.++=-+|.++= ...+
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL----~~~~ 92 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRL----GTAY 92 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHh----hhhH
Confidence 456688899999999999999854 555667778888888888777666543 334555544444331 1256
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHH
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 150 (209)
..++..+...|++-+|.++.......+...-..++.+-.+.+|...
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 7888999999999999999988755555556677888777777554
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.81 E-value=0.28 Score=40.33 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=69.1
Q ss_pred ccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCCcH----hHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHH
Q 045511 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDV----VTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVL 171 (209)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li 171 (209)
.+...++.+-..|.+.|++++|...|++. ..|+. .+|..+-.+|...|+.++|++.+.+. .+.+ .-|..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn--~~f~~i~ 150 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN--LKFSTIL 150 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--hhHHHHH
Confidence 45678999999999999999999999986 34553 46999999999999999999999997 4321 1232221
Q ss_pred HH--hccccchhHHHHHHHHHHHhccC
Q 045511 172 SA--CSSLGSRKLGKAIHAHSLRNLNE 196 (209)
Q Consensus 172 ~~--~~~~g~~~~a~~~~~~~~~~~~~ 196 (209)
.. +....+.....++++...+-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 11 11223445677788888877753
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=3.7 Score=36.02 Aligned_cols=114 Identities=11% Similarity=-0.039 Sum_probs=79.4
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
-.--+.+.-+.-+..-|+..+|.++-.+.+- ||-..|-.=+.+++..+++++-+++=+.+ .++.-|.-.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHH
Confidence 3345667777778888888888887666653 78888888888888888887655543322 1256677778
Q ss_pred HHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
..|.+.|+.++|.+++.+..... -...+|.+.|++.+|.++-.+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHHHH
Confidence 88888888888888888765322 455666677777666554433
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.72 E-value=0.79 Score=37.81 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=55.4
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH----YTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
+...|+.+-.+|.+.|++++|...|++-.+. .|+. .+|..+-.+|.+.|++++|.+.++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3388999999999999999999999998874 4664 46899999999999999999999988875
No 220
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.56 E-value=3.2 Score=33.27 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=74.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc-----------ccHH--HHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP-----------HILN--TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL 73 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~-----------~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll 73 (209)
+.|..+.|..-|.++....+..-.. ..|+ ..+....-+|+...|...+..+.+-. +.|...|..--
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 6677777777777666553211011 2222 23344556789999999999888754 36778888888
Q ss_pred HHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
++|...|++..|.+=+...-+-. .-|+.+.--+-..+-..|+.+.++...++.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 89999999888877666554433 233444444445555566666655555444
No 221
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.53 Score=36.93 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=68.5
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCC---CCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP---SSYN--HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 104 (209)
.+.+...++..-.+..+++++...+-+++... ..|+ .+++..++.-| +++.+.-++..-.+.|+-||.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhH
Confidence 33566666666666778888888876665432 2333 33333333333 667888888888999999999999
Q ss_pred HHHHHHHHhCCChhhHHHHHHhc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+.+|+.+.+.+++.+|-++.-.|
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999988887665
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.10 E-value=0.47 Score=32.41 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 97 (209)
...+..++.+.+.|+-+.-.++++++.+. -.++....-.+-.+|.+.|+..++.+++.+.-++|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555555555555555555555432 234555555555666666666666666655555553
No 223
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.08 E-value=1.6 Score=30.82 Aligned_cols=50 Identities=4% Similarity=-0.023 Sum_probs=27.2
Q ss_pred hccccHHHHHHHHHHHHHhcc-CccHhHHHHHHHHHHhCCChhhHHHHHHhcC
Q 045511 77 SLAHAHQKGLEIHAHVIKYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 128 (209)
.+.++.+.++.+++.+.--.. .|...++... .++++|++.+|.++|+++.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHh
Confidence 455666667777666654321 1112233322 3556677777777777763
No 224
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=2 Score=33.88 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=68.1
Q ss_pred HhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-CcH-----hHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCH
Q 045511 94 KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDV-----VTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 164 (209)
Q Consensus 94 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~ 164 (209)
..|.+.+..+-..++..-....+++++...+-+++. |+. .+-.+.++ ++-.-++++++.+...= |+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 345566667777777777777888888888877732 221 11122222 22344566777776554 999999
Q ss_pred HhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 165 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.|++.+|..+.+.+++..|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999988888877665553
No 225
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.87 E-value=4.7 Score=34.85 Aligned_cols=164 Identities=11% Similarity=0.078 Sum_probs=114.0
Q ss_pred hcchhccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 3 VNGLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 3 i~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
++++..++....++..+++...++..+++.+.-. -.+...|+.++|....+.-.+..+ -+.+.|+.+--.+....++
T Consensus 15 lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkG--L~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 15 LKCYETKQYKKGLKLIKQILKKFPEHGESLAMKG--LTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCCccchhHHhcc--chhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhH
Confidence 3455566677778888888886655555433322 234566888999988877766544 5678888888788888899
Q ss_pred HHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
++|...|...+..+ +-|..+|--+--.-+..++++......... .......|..+.-++.-.|++..|..+..+.
T Consensus 92 ~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 92 DEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888766 456667766555555566666555544443 3345678888888888899999999888888
Q ss_pred ---CCCCCHHhHHHH
Q 045511 159 ---DVKPNANTLVSV 170 (209)
Q Consensus 159 ---~~~p~~~t~~~l 170 (209)
.-.|+...|...
T Consensus 171 ~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHS 185 (700)
T ss_pred HhhccCCCHHHHHHH
Confidence 224666655443
No 226
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.72 E-value=1 Score=34.90 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=74.2
Q ss_pred CCcccHHHHHHHHHcC--CCccchHHHHHHhhhC-CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh-ccCccHhHH
Q 045511 29 PQPHILNTLLKLLTQS--STPQNAIPLYNKMLNC-PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY-GHLHDIFIQ 104 (209)
Q Consensus 29 p~~~~~~~li~~~~~~--g~~~~a~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~ 104 (209)
.|..+...+++.+... .....-.++.+-+... |-.++..+...+|..++..+++....++++.-... +...|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 5667777777777762 2333444444444433 45678888899999999999999888888877655 667788899
Q ss_pred HHHHHHHHhCCChhhHHHHHHhc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
...|+.....|+..-..++.++=
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCC
Confidence 99999999999999888888653
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.60 E-value=2.2 Score=29.25 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH---HHHHhCCC
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL---HFYVTVKD 116 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll---~~~~~~g~ 116 (209)
+++..|+++.|++.|.+-..- .+-....||.--.++.-+|+.++|.+-++...+-.-..+...+.+.+ ..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666665543 22344566666666666666666666665555432222322222222 23445566
Q ss_pred hhhHHHHHHhc
Q 045511 117 IFSAHQIFNSV 127 (209)
Q Consensus 117 ~~~a~~~~~~~ 127 (209)
.+.|..-|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 66666666543
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.37 E-value=3.2 Score=31.83 Aligned_cols=89 Identities=17% Similarity=0.029 Sum_probs=50.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCccH---hHHHHHHHHHHhCCChhhHHHHHHhcCC------CcHhHHHHH
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI---FIQNSLLHFYVTVKDIFSAHQIFNSVVF------PDVVTWTTI 138 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l 138 (209)
-|+..+..+ +.|++..|.+-|....+.. +-+. ..+==|-.++...|++++|-.+|..+.+ +-..+.--+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 466666654 5555777777777666654 1111 1222355666667777777777666521 122334444
Q ss_pred HHHHHhCCChHHHHHHHhhC
Q 045511 139 ISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m 158 (209)
-.+..+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 55556666666666666665
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.28 E-value=4.1 Score=35.42 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHH-----------hHHH
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN-----------TLVS 169 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~-----------t~~~ 169 (209)
.+...+-..+.+...+.-|-++|.+|.+ .-.++..+...++|.+|+.+-++. ...||.+ -|.-
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeE 822 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEE 822 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHH
Confidence 3444555556666778888888887743 235677888899999999998888 6666654 2444
Q ss_pred HHHHhccccchhHHHHHHHHHHHhc
Q 045511 170 VLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.=+++.++|+-.+|.++++++....
T Consensus 823 AqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 823 AQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHhcchHHHHHHHHHhhhhh
Confidence 5578899999999999998875553
No 230
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.25 E-value=4.4 Score=31.51 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=53.8
Q ss_pred ccchHHHHHHhhh-CCCCCCHHHHHHHHHHHhccc--cHHHHHHHHHHHH-HhccCccHhHHHHHHHHHHhCCChhhHHH
Q 045511 47 PQNAIPLYNKMLN-CPSSYNHYTFTQALKACSLAH--AHQKGLEIHAHVI-KYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122 (209)
Q Consensus 47 ~~~a~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 122 (209)
+.+|+.+|+...- +.+.-|..+...+++...... .+..-.++.+.+. ..|-.++..+...+|..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3344444443222 234455566666666554411 2233333333333 12234555555555555566665555555
Q ss_pred HHHhcC-----CCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 123 IFNSVV-----FPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 123 ~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
.++.-. ..|...|..+|+.....|+..-...+..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 555441 23455555555555555555555554433
No 231
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.01 E-value=1.1 Score=31.26 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=33.5
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
...+.++...+..++-..+..|...+|...+ +.+.|++++|..+|++..+.+. ...|...+.++|-.-
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNA 90 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHh
Confidence 3444444444555544444444445554444 3455666666666666655431 123444555544443
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=5.4 Score=31.91 Aligned_cols=144 Identities=10% Similarity=-0.078 Sum_probs=89.8
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHH----HHHHHHHHhCCChhh
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ----NSLLHFYVTVKDIFS 119 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~----~~ll~~~~~~g~~~~ 119 (209)
.|+..+|-..++++.+. .+-|.-.+.-.=.+|.-.|+...-...++.+...- .+|...| ..+--++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45556666666666553 44566666666677777787777777777665431 2343322 223334556788888
Q ss_pred HHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC------CCCCCHHhHHHHHHHhccccchhHHHHHHHH
Q 045511 120 AHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 120 a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
|++.-++-- +.|...-++.-..+-..|++.++.++..+- +--.-.+.|-..--.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888877763 345666677777777788888888777665 1111223444444455666888888888873
No 233
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.94 E-value=2.6 Score=37.65 Aligned_cols=52 Identities=6% Similarity=-0.042 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 136 TTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
-++++..|-.|+.++|-++-++ .-|....-.+-+.|...|++.+|..+|.+.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444555555555544444 335556666777777888888888777754
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=91.76 E-value=1.5 Score=31.02 Aligned_cols=79 Identities=9% Similarity=-0.106 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDM 154 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~ 154 (209)
..|++++|+.+|..+.-.+ ..+..-|..|-.++-..+++++|...|... ...|...+--.-.+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3444555555554444332 122223344444444444555555444332 111111222223344444555555554
Q ss_pred Hhh
Q 045511 155 FCG 157 (209)
Q Consensus 155 ~~~ 157 (209)
|..
T Consensus 128 f~~ 130 (165)
T PRK15331 128 FEL 130 (165)
T ss_pred HHH
Confidence 444
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.38 E-value=6.1 Score=32.97 Aligned_cols=82 Identities=11% Similarity=-0.019 Sum_probs=53.6
Q ss_pred ccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhcccc
Q 045511 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLG 178 (209)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g 178 (209)
.+...|..|-+...+.|+++-|++.|.+..+ |+.|+-.|.-.|+.+.-.++-+.- ...--++....++...|
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a---~~~~~~n~af~~~~~lg 416 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIA---EERGDINIAFQAALLLG 416 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHH---HHTT-HHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHH---HHccCHHHHHHHHHHcC
Confidence 4677899999999999999999999887643 566666777777776655554332 11122455556666678
Q ss_pred chhHHHHHHH
Q 045511 179 SRKLGKAIHA 188 (209)
Q Consensus 179 ~~~~a~~~~~ 188 (209)
+.++..+++.
T Consensus 417 d~~~cv~lL~ 426 (443)
T PF04053_consen 417 DVEECVDLLI 426 (443)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8887777754
No 236
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.38 E-value=6.5 Score=31.61 Aligned_cols=175 Identities=8% Similarity=-0.002 Sum_probs=100.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHH---HHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHH--HHHHhcccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTL---LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA--LKACSLAHA 81 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l--l~~~~~~~~ 81 (209)
.+++..+|+..+..+.+. |+..|.++ -..|...|+...|+.=+.+..+ ++||-.. ..+ -..+.++|.
T Consensus 50 a~~Q~sDALt~yHaAve~-----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~-ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEG-----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMA-ARIQRGVVLLKQGE 121 (504)
T ss_pred HhhhHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHH-HHHHhchhhhhccc
Confidence 455555555554444332 33333332 3345556776767666666665 4566321 111 123467788
Q ss_pred HHHHHHHHHHHHHhccCccH--------------hHHHHHHHHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHh
Q 045511 82 HQKGLEIHAHVIKYGHLHDI--------------FIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSK 144 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~--------------~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~ 144 (209)
++.|+.=|+.+++.....+. ...-..+..+...|+...|......+ ..+|...|-.=-.+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 88888888888766432111 11223445666678888887777666 33577777777788888
Q ss_pred CCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHH
Q 045511 145 CGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 145 ~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
.|.+..|+.=++.. .+.. |+.++--+-..+...|+.+.+....++
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888877666555 3332 334444455556666776665544443
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=4.1 Score=33.10 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=70.5
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhcc
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSS 176 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~ 176 (209)
..++++|..+|.+.+++.+|.+.-+.. ..+|....=-==.+|...|+++.|+..|+.+ .+.|+....+.=|..|.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 457888999999999999999988876 3455555444557888899999999999999 999988887776766653
Q ss_pred -ccc-hhHHHHHHHHHHHh
Q 045511 177 -LGS-RKLGKAIHAHSLRN 193 (209)
Q Consensus 177 -~g~-~~~a~~~~~~~~~~ 193 (209)
... .++..++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 333 34557788877443
No 238
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.29 E-value=2.5 Score=35.00 Aligned_cols=130 Identities=13% Similarity=-0.018 Sum_probs=68.6
Q ss_pred cCCCccchHHHHHHhhhCCC-CC---C-HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH--HHhCC
Q 045511 43 QSSTPQNAIPLYNKMLNCPS-SY---N-HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF--YVTVK 115 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g~-~p---~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g 115 (209)
+.+++.++.++|.+.-++-- .| . ...-+.+|++|-. .+++..+..+....+.. | ...|-.|..+ +-+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhh
Confidence 45777777777777755421 11 1 2334556666643 34555555555554332 1 2223333332 23556
Q ss_pred ChhhHHHHHHhcCC------------------CcHhHHHHHHHHHHhCCChHHHHHHHhhC-------CCCCCHHhHHHH
Q 045511 116 DIFSAHQIFNSVVF------------------PDVVTWTTIISGLSKCGFHKEAIDMFCGI-------DVKPNANTLVSV 170 (209)
Q Consensus 116 ~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~p~~~t~~~l 170 (209)
.+..|.+.+..-.. +|..-=++.+.++...|++.++..++++| ...-|..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 66777666643310 12223355567777777777777777776 334566667665
Q ss_pred HHHhcc
Q 045511 171 LSACSS 176 (209)
Q Consensus 171 i~~~~~ 176 (209)
.-.+++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 555443
No 239
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.24 E-value=0.44 Score=24.25 Aligned_cols=22 Identities=5% Similarity=-0.087 Sum_probs=9.6
Q ss_pred HHHHHHhccccchhHHHHHHHH
Q 045511 168 VSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~ 189 (209)
..+-+.|.+.|++++|.++++.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444444444
No 240
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.23 E-value=6.2 Score=32.81 Aligned_cols=135 Identities=14% Similarity=0.055 Sum_probs=86.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHH--hccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC--SLAH 80 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~ 80 (209)
+.++..++.+.|..+.......|-. ...+-+|++|..+ +.+.....+....+.. | ...|-.+..+. -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhh
Confidence 4455566666666666654333322 4456777887766 4566666665555532 3 23344444443 4667
Q ss_pred cHHHHHHHHHHHHHh--ccCc------------cHhHHHHHHHHHHhCCChhhHHHHHHhcC--------CCcHhHHHHH
Q 045511 81 AHQKGLEIHAHVIKY--GHLH------------DIFIQNSLLHFYVTVKDIFSAHQIFNSVV--------FPDVVTWTTI 138 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l 138 (209)
.++.|.+.+.-..+. +-.| |-..=+...+++++.|++.+++.++++|. ..++.+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888888776655 3222 23334677889999999999999999882 3788899986
Q ss_pred HHHHHhC
Q 045511 139 ISGLSKC 145 (209)
Q Consensus 139 i~~~~~~ 145 (209)
+-.++++
T Consensus 174 vlmlsrS 180 (549)
T PF07079_consen 174 VLMLSRS 180 (549)
T ss_pred HHHHhHH
Confidence 6655544
No 241
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.19 E-value=3.7 Score=28.50 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=67.1
Q ss_pred HHHHHhccCccH--hHHHHHHHHHHhCCChhhHHHHHHhcC---------CCcHhHHHHHHHHHHhCCChH-HHHHHHhh
Q 045511 90 AHVIKYGHLHDI--FIQNSLLHFYVTVKDIFSAHQIFNSVV---------FPDVVTWTTIISGLSKCGFHK-EAIDMFCG 157 (209)
Q Consensus 90 ~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~-~a~~~~~~ 157 (209)
.-|.+.+..++. ...|+++.-....+++.....+++.+. ..+...|++++++.+++.--. -+..+|+-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 344555555554 356888888888888888887777762 246678999999997776633 35666666
Q ss_pred C---CCCCCHHhHHHHHHHhccccchhH
Q 045511 158 I---DVKPNANTLVSVLSACSSLGSRKL 182 (209)
Q Consensus 158 m---~~~p~~~t~~~li~~~~~~g~~~~ 182 (209)
| +.+++..-|..+|++|.+.-..+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 6 788899999999999988755443
No 242
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.06 E-value=4.8 Score=29.54 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHcCCCccchHHHHHHhhhCCC--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPS--SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
..+.+.|++++|...|+.+...-. +--....-.+..++-+.|+++.|...++.+.+.-......-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 346678889999999999886421 112234456677788889999999999888876433333334444444432211
Q ss_pred ----------hhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHH
Q 045511 117 ----------IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 117 ----------~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
...+.+. ...|..+|.-|=.+.-..+|......+.-.....-+. +.+.|.+.|.+.-|..-
T Consensus 93 ~~~~~~~~~D~~~~~~A--------~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~-ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKA--------IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY-IARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHH-TT---HHHHHH--------HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHCTT-HHHHHHH
T ss_pred CccchhcccChHHHHHH--------HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcccHHHHHHH
Confidence 1111111 2235566666666666666655544440010111111 23445555555555555
Q ss_pred HHHHHHh
Q 045511 187 HAHSLRN 193 (209)
Q Consensus 187 ~~~~~~~ 193 (209)
++.+.++
T Consensus 164 ~~~v~~~ 170 (203)
T PF13525_consen 164 FQYVIEN 170 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.02 E-value=7.4 Score=31.63 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=89.8
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCc------ccHHHHHHHHHc---CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQP------HILNTLLKLLTQ---SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL 78 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 78 (209)
+.+....+..+-++.+.....|+. .+--...-++-+ .|+.++|.+++.......-.++..||..+-..|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 334444444455555555444433 112233445556 89999999999996666666888888888766622
Q ss_pred ---------cccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC-hh---hHHHHH---Hhc--------CCCcHhH
Q 045511 79 ---------AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD-IF---SAHQIF---NSV--------VFPDVVT 134 (209)
Q Consensus 79 ---------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~---~a~~~~---~~~--------~~~~~~~ 134 (209)
...++.|.++|..--+. .||..+--++...+.-.|. .+ +..++- ... ...+-.-
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd 307 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWD 307 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 12355666666544332 3444333233333333443 22 222222 111 1246677
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhC-CCCC
Q 045511 135 WTTIISGLSKCGFHKEAIDMFCGI-DVKP 162 (209)
Q Consensus 135 ~~~li~~~~~~g~~~~a~~~~~~m-~~~p 162 (209)
+.+++.+..-.|+.++|.+....| ...|
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 889999999999999999999998 4444
No 244
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=90.96 E-value=3.3 Score=37.68 Aligned_cols=127 Identities=13% Similarity=-0.006 Sum_probs=84.3
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHH--HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA--LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 107 (209)
+..++......|++..+++.|..+.-.--+. -+.....++.. =-.+...++...+...|+.-.+.. +-|...|..+
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gL 602 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGL 602 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHH
Confidence 4588889999999999999999883222111 11111222222 223455667777777777776654 4567799999
Q ss_pred HHHHHhCCChhhHHHHHHhcCCCcH-hHHHHHH--HHHHhCCChHHHHHHHhhC
Q 045511 108 LHFYVTVKDIFSAHQIFNSVVFPDV-VTWTTII--SGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li--~~~~~~g~~~~a~~~~~~m 158 (209)
..+|.++|++..|.++|++....+. ..|.... -..|..|.+.++...+...
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999999988754222 1222222 2235678888888887776
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=2 Score=38.11 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=54.2
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
+|.-|..+.+..+--..++.+.+.|+ .+...-..||.+|.+.++.+...++.+.-. .|.. ..-....+..+-+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 34444444444444445555555554 344444555666666665555444443332 1211 1112333444444444
Q ss_pred hhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.++|+-+=..... +....++++. ..+++++|++.+..+
T Consensus 479 l~~a~~LA~k~~~-he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 4444443333221 3333344443 457788888888877
No 246
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.94 E-value=9.7 Score=32.84 Aligned_cols=120 Identities=9% Similarity=-0.051 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc--cccHHHHHHHHHHHHHhccCccH-------
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL--AHAHQKGLEIHAHVIKYGHLHDI------- 101 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~~~------- 101 (209)
...+..+++++...|......-+.+.+....+ ++...-..+..+... .-..+....+++.+......+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~ 418 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESAL 418 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 45777788888888886555555555555444 333333334443333 33444444444444434444443
Q ss_pred hHHHHHHHHHHhCCCh------hhHHHHHHhc-----CCCcHhHHHHHHHHHHhCCChHHH
Q 045511 102 FIQNSLLHFYVTVKDI------FSAHQIFNSV-----VFPDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~------~~a~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a 151 (209)
.++.++++-+|..... ++..+.+.+. .+.|..--...|+++++.|.....
T Consensus 419 l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i 479 (574)
T smart00638 419 LAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSI 479 (574)
T ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHH
Confidence 4566677656655432 2232222221 122333335567777777775554
No 247
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.64 E-value=7 Score=30.72 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=78.1
Q ss_pred ccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc--c----ccHHHHHHHHHHHHHhcc---CccHhHHHHHHHHHHhCCCh
Q 045511 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSL--A----HAHQKGLEIHAHVIKYGH---LHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 47 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~m~~~g~---~~~~~~~~~ll~~~~~~g~~ 117 (209)
+++...+++.|.+.|+.-+..+|-+....... . .....+.++|+.|++... .++-.++..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677889999999999998888775444433 2 235678999999998863 4555677777665 33333
Q ss_pred ----hhHHHHHHhcC-----CCcHhHHHHHHHHHHhCCC---hHHHHHHHhhC---CCCCCHHhHHHH
Q 045511 118 ----FSAHQIFNSVV-----FPDVVTWTTIISGLSKCGF---HKEAIDMFCGI---DVKPNANTLVSV 170 (209)
Q Consensus 118 ----~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m---~~~p~~~t~~~l 170 (209)
+.++++|+.+. +.|..-+-+-+-+++.... ..++.++++.+ |+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 45566666652 3344444444444444333 33577777777 777766666544
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.58 E-value=5 Score=28.89 Aligned_cols=58 Identities=5% Similarity=-0.005 Sum_probs=26.9
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccH--hHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI--FIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
+..+...|++.|+.+.|.+.|..+.+....+.. ..+-.+|......+++..+.....+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444444455555555555555555444333322 2344444555555554444444433
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.39 E-value=6.6 Score=29.99 Aligned_cols=161 Identities=19% Similarity=0.102 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCC--CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCP--SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
.-|+.-+. -.+.|++++|.+.|+.+..+- -+....+--.++.++-+.++++.|...++...+.-....-.-|-.-|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 45555444 567899999999999998753 233557777888899999999999999998887654444455666666
Q ss_pred HHHhC-------CChhhHHHHHHhc-------CC----CcHh----------H-H-HHHHHHHHhCCChHHHHHHHhhC-
Q 045511 110 FYVTV-------KDIFSAHQIFNSV-------VF----PDVV----------T-W-TTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 110 ~~~~~-------g~~~~a~~~~~~~-------~~----~~~~----------~-~-~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
+++.. .|...+.+-|..+ |. +|.. . + -.+-+-|.+.|.+..|..-+++|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66543 3344445555444 11 2221 1 1 23347788999999999999999
Q ss_pred CCCCCH----HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 159 DVKPNA----NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 159 ~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.--|++ ...-.+..+|...|-.++|...-+-+..+
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 223333 45677788899999999888876655444
No 250
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.32 E-value=1.4 Score=28.53 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCChH--HHHHHHhhC---CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhh
Q 045511 136 TTIISGLSKCGFHK--EAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207 (209)
Q Consensus 136 ~~li~~~~~~g~~~--~a~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 207 (209)
++=-..|....+.| +..+-++.+ .+-|+.....+.+++|-+..|+..|.++|+-++.+ +.+....|.-+++
T Consensus 12 ~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 12 DARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33334444444333 344444444 88899999999999999999999999999776544 3333336665553
No 251
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.31 E-value=0.6 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHh
Q 045511 104 QNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
|+.|-..|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444443
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.30 E-value=2.1 Score=29.59 Aligned_cols=75 Identities=9% Similarity=-0.042 Sum_probs=42.8
Q ss_pred HHcCCCccchHHHHHHhhhCC--CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC
Q 045511 41 LTQSSTPQNAIPLYNKMLNCP--SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 115 (209)
..+.|++++|.+.|+.+..+= -+-....--.++.++-+.+++++|...++...+.....-.+-|-..+.|++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 345567777777777666542 111224445566666777777777777776666654333445555555554443
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.16 E-value=1.7 Score=23.12 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=9.7
Q ss_pred HHHHHhccccHHHHHHHHHHHHH
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~ 94 (209)
+-.++...|++++|.++|+...+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=90.10 E-value=2.2 Score=30.25 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=52.1
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChh
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 118 (209)
..+-+.|++++|..+|+-+-..+. -|..-+-.|-..+-..++++.|...|......+ .-|+..+=-.-.+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 334567788888888877776442 222223333333344567777777776554443 233444444556777778888
Q ss_pred hHHHHHHhcC
Q 045511 119 SAHQIFNSVV 128 (209)
Q Consensus 119 ~a~~~~~~~~ 128 (209)
.|+..|....
T Consensus 123 ~A~~~f~~a~ 132 (165)
T PRK15331 123 KARQCFELVN 132 (165)
T ss_pred HHHHHHHHHH
Confidence 8887777653
No 255
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.93 E-value=3.4 Score=31.97 Aligned_cols=92 Identities=8% Similarity=0.047 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 113 (209)
+-.=|.+++..+++.++..+.-+--+..-+........-|-.|.+.+.+..+.++-...++..-..+..-|.++...|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34457788888899988887655544332333455666677789999999999998888776545555668888777766
Q ss_pred C-----CChhhHHHHHH
Q 045511 114 V-----KDIFSAHQIFN 125 (209)
Q Consensus 114 ~-----g~~~~a~~~~~ 125 (209)
+ |.+++|+++..
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 4 99999999873
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.74 E-value=3.2 Score=28.73 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhcc--CccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--Cc--HhHHHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PD--VVTWTTII 139 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li 139 (209)
...|..-..+ .+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.+++++|...+++..+ |+ ..-|--.+
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3444444444 477888888888888876631 12345666788888888888888888888732 21 24566666
Q ss_pred HHHHhCCC
Q 045511 140 SGLSKCGF 147 (209)
Q Consensus 140 ~~~~~~g~ 147 (209)
.|++.-..
T Consensus 90 ~gL~~~~~ 97 (142)
T PF13512_consen 90 RGLSYYEQ 97 (142)
T ss_pred HHHHHHHH
Confidence 66655433
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=9.5 Score=30.61 Aligned_cols=146 Identities=5% Similarity=-0.054 Sum_probs=101.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhC-CCCCCH--HHHH--HHHHHHhcccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC-PSSYNH--YTFT--QALKACSLAHA 81 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~--~t~~--~ll~~~~~~~~ 81 (209)
-+|+..+|...++++.+.++ .|..+++-.=.+|.-+|+.+.-...+++.... + ||. .+|- ..--++...|-
T Consensus 115 ~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHHHhhHHHhcc
Confidence 56777888888888877753 36688888889999999999999999888653 2 333 2332 33333456688
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC----CcH----hHHHHHHHHHHhCCChHHHHH
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF----PDV----VTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~a~~ 153 (209)
++.|++.-+.-.+-+ +.|...-.+..+.+--+|++.++.+...+-.. .+. --|+.- -.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHH
Confidence 888888777666654 55677778888888899999999998876532 111 112222 23445588999999
Q ss_pred HHhhC
Q 045511 154 MFCGI 158 (209)
Q Consensus 154 ~~~~m 158 (209)
+|++=
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 99653
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.48 E-value=2.1 Score=35.84 Aligned_cols=70 Identities=11% Similarity=-0.005 Sum_probs=40.4
Q ss_pred HHHcCCCccchHHHHHHhhhCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc-HhHHHHHHH
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSS-YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-IFIQNSLLH 109 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~ 109 (209)
++-+.|+.++|.+.+++|.+..-. -+......++.++...+.+.++..++....+...+.+ ..+|+..+-
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 334557777777777777654311 2334566677777777777777777766654332222 345665443
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.47 E-value=7.8 Score=29.79 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCC--Cc----HhHHHHHHHHHHhCCChHHHHHHHhhC----CCCCCH-HhHHHHH
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVF--PD----VVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNA-NTLVSVL 171 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~p~~-~t~~~li 171 (209)
.|+.-+..| +.|++.+|+..|....+ |+ .-.+==|-.++...|++++|-.+|..+ +-.|-. .++--+-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 688888765 55669999999988832 21 223334678999999999999999999 222222 4555566
Q ss_pred HHhccccchhHHHHHHHHHHHh
Q 045511 172 SACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
....+.|+.++|..+|+.+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6677899999999999999877
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.37 E-value=0.94 Score=24.12 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=6.2
Q ss_pred HHHhCCChHHHHHHHhh
Q 045511 141 GLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 141 ~~~~~g~~~~a~~~~~~ 157 (209)
.|.+.|++++|.++|++
T Consensus 10 ~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33333333333333333
No 261
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.30 E-value=4.2 Score=26.14 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred hHHHHHHHhhC---CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 148 ~~~a~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
.-++.+-++.+ .+-|+.....+.+++|-+..|+..|..+++-++.+ +..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 33445555555 88899999999999999999999999999877633 222444565554
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.27 E-value=6.5 Score=28.30 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=65.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH--YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
..+..+...|++.|+.+.|.+.|.++.+....|.. ..+-.+|....-.+++..+...+......--.++.....+=++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 78899999999999999999999999987665544 3456667777888898888888766654432222221111111
Q ss_pred -----HHHhCCChhhHHHHHHhc
Q 045511 110 -----FYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 110 -----~~~~~g~~~~a~~~~~~~ 127 (209)
.+...+++.+|-+.|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 123356777777776554
No 263
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.63 E-value=12 Score=30.64 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhc-----CCCcHh--HHHHHHHHHHh---CCChHHHHHHHhhC-CCCCCHHh-HH
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSV-----VFPDVV--TWTTIISGLSK---CGFHKEAIDMFCGI-DVKPNANT-LV 168 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~~--~~~~li~~~~~---~g~~~~a~~~~~~m-~~~p~~~t-~~ 168 (209)
...+.+.+...|..|+++.|.++.+.- .+++.. .--.|+.+-+. .-+...|...-.+- .+.||.+. -.
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHH
Confidence 455667777777777777777777643 122221 11122211111 11233333333222 44455432 22
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhc
Q 045511 169 SVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.--+++.+.|++.++-.+++.+=+..
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcC
Confidence 23455666677777777766665553
No 264
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=88.50 E-value=4.3 Score=25.46 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHH
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 153 (209)
+.++++.+.+.|+ .+..-.+.+-..=-+.|+.+.|.++++.++ .....|+..++++-..|+.+.|.+
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 5566777777773 223333333333346688888999998888 777888889998888888776643
No 265
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=2.7 Score=35.33 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=77.5
Q ss_pred HHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--Cc-HhHHHHHHHHHHhCCChHH
Q 045511 74 KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PD-VVTWTTIISGLSKCGFHKE 150 (209)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 150 (209)
++.+..|+++.|...|-+-..-. ++|.+.|+.=..+|++.|++++|.+-=.+-++ |+ ...|+-.=-++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567899999999998887765 45888999999999999999998876665543 44 3478888888888999999
Q ss_pred HHHHHhhC-CCCCCH-HhHHHHHHHh
Q 045511 151 AIDMFCGI-DVKPNA-NTLVSVLSAC 174 (209)
Q Consensus 151 a~~~~~~m-~~~p~~-~t~~~li~~~ 174 (209)
|+.-|.+= ...||. ..++.+..++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999885 445544 4566666666
No 266
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.39 E-value=1.1 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.+++.|-..|...|++++|++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHH
Confidence 3556666666666666666666654
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.15 E-value=5.3 Score=28.24 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=22.9
Q ss_pred cCCCccchHHHHHHhhhCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 43 QSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
+.++.+++..++.-++-.. -.|...++..++ +...|++.+|..+|+.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555554421 112222333322 23455555555555555443
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.14 E-value=7.3 Score=27.49 Aligned_cols=161 Identities=15% Similarity=0.066 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHH-HHhccccHHHHHHHHHHHHHhcc--CccHhHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALK-ACSLAHAHQKGLEIHAHVIKYGH--LHDIFIQNSLL 108 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll 108 (209)
..+..........++...+...+.........+. ........ .+...|+++.+...+........ ......+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 5555555666666677777777777766443331 22222222 66777888888888777754221 12333444444
Q ss_pred HHHHhCCChhhHHHHHHhcCC---C-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhH
Q 045511 109 HFYVTVKDIFSAHQIFNSVVF---P-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKL 182 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~ 182 (209)
..+...++.+.+...+..... . ....+..+-..+...++++.+...+... ...|+ ...+..+...+...|..+.
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHH
Confidence 446677778888777777632 2 3456677777777777778887777777 55554 3333333333335556677
Q ss_pred HHHHHHHHHHh
Q 045511 183 GKAIHAHSLRN 193 (209)
Q Consensus 183 a~~~~~~~~~~ 193 (209)
+...+....+.
T Consensus 255 ~~~~~~~~~~~ 265 (291)
T COG0457 255 ALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHh
Confidence 76666655443
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.39 E-value=16 Score=30.72 Aligned_cols=125 Identities=10% Similarity=0.091 Sum_probs=83.9
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCcc------HhHHHHHHHHHHhC----CChhhHHHHHHhcCC--CcHhHHH
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHD------IFIQNSLLHFYVTV----KDIFSAHQIFNSVVF--PDVVTWT 136 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~--~~~~~~~ 136 (209)
+..+++..+=.|+-+.+.+.+..-.+.+--.. ...|...+..++.. ...+.|+++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 45556666777888888888877655431122 23466666655554 577899999999954 8877776
Q ss_pred HHH-HHHHhCCChHHHHHHHhhC-CCCC-----CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 137 TII-SGLSKCGFHKEAIDMFCGI-DVKP-----NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 137 ~li-~~~~~~g~~~~a~~~~~~m-~~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
..- +.+...|++++|.+.|++. ..+. ....+--+.-.+.-..++++|.+.|..+.+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 554 5556689999999999976 1111 1122223333455678999999999988765
No 270
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=87.38 E-value=19 Score=32.01 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=88.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCC-cHhHHHHHHHHHHhCC
Q 045511 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFP-DVVTWTTIISGLSKCG 146 (209)
Q Consensus 70 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~-~~~~~~~li~~~~~~g 146 (209)
...-..+.+.+..+++...+.+..+.- +.....|.-.-..+...|..++|.+.|... ..| ++...+++-..+.+.|
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 344455566666666665555544332 344556666667777888999999998876 345 4667888899999999
Q ss_pred ChHHHHH--HHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 147 FHKEAID--MFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 147 ~~~~a~~--~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+...|.. ++.++ .+.|+- ..|-.+-......|+.+.|.+-|+-..+-
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8877777 88888 777754 67888888899999999999988865443
No 271
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=9.3 Score=31.12 Aligned_cols=91 Identities=9% Similarity=0.023 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCCcHhHH-HHHHHHHH
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTW-TTIISGLS 143 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~-~~li~~~~ 143 (209)
.++..+.-.+.+.+++..|.+.=+..++.. ++|....=.=-.+|...|+++.|+..|..+ .+|+...- +-++..--
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345555666667777777777766666654 455555545556677777777777777776 23443333 33333333
Q ss_pred hCCChH-HHHHHHhhC
Q 045511 144 KCGFHK-EAIDMFCGI 158 (209)
Q Consensus 144 ~~g~~~-~a~~~~~~m 158 (209)
+..... ...++|+.|
T Consensus 337 k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 333322 335666666
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.99 E-value=8.4 Score=26.93 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=9.1
Q ss_pred HHhCCChhhHHHHHHhcC
Q 045511 111 YVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~ 128 (209)
+..+|++++|.++|++..
T Consensus 54 ~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 54 LIARGNYDEAARILRELL 71 (153)
T ss_pred HHHcCCHHHHHHHHHhhh
Confidence 344555555555555553
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.72 E-value=2.7 Score=34.97 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=80.1
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
-.....+.|+++.|.++-++. .+...|..|-....+.|+++.|++.|.... -+..|+-.|.-.|+
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGD 388 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-
T ss_pred HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCC
Confidence 344566788888888775443 377899999999999999999999987654 36678888888999
Q ss_pred hhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHh
Q 045511 117 IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT 166 (209)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t 166 (209)
.+.-.++-+..... .-+|..+.++...|+.++..+++.+-|..|-+..
T Consensus 389 ~~~L~kl~~~a~~~--~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~ 436 (443)
T PF04053_consen 389 REKLSKLAKIAEER--GDINIAFQAALLLGDVEECVDLLIETGRLPEAAL 436 (443)
T ss_dssp HHHHHHHHHHHHHT--T-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHc--cCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHH
Confidence 88877777654322 2266666777778999999988888655554443
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.57 E-value=13 Score=28.77 Aligned_cols=157 Identities=12% Similarity=0.035 Sum_probs=81.7
Q ss_pred HcCCCccchHHHHHHhhhCC--CCCCH------HHHHHHHHHHhccccHHHHHHHHHHHHHh--------ccCcc-----
Q 045511 42 TQSSTPQNAIPLYNKMLNCP--SSYNH------YTFTQALKACSLAHAHQKGLEIHAHVIKY--------GHLHD----- 100 (209)
Q Consensus 42 ~~~g~~~~a~~l~~~m~~~g--~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--------g~~~~----- 100 (209)
.+.|+.+.|..++.+....- ..|+. ..|+.-...+.+..+++.|..+++.-.+- ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777887777776543 22222 12333334433333666666655443322 12232
Q ss_pred HhHHHHHHHHHHhCCChhhHHH---HHHhcC--CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHH
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQ---IFNSVV--FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLS 172 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~---~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~ 172 (209)
..++..++.+|...+..+...+ +++.+. -|+ ..++-.-|+.+.+.++.+.+.+++.+| .+.-....+..++.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 2366777777777776554444 444441 133 344444555565677888888888888 33323334444444
Q ss_pred Hh---ccccchhHHHHHHHHHHHhccCCCc
Q 045511 173 AC---SSLGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 173 ~~---~~~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
.+ ... ....+...+..+....+.|..
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 43 332 233455555555555555544
No 275
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.12 E-value=18 Score=29.78 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=81.6
Q ss_pred CCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCHHH--HHHHH-------------------------------
Q 045511 29 PQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYT--FTQAL------------------------------- 73 (209)
Q Consensus 29 p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t--~~~ll------------------------------- 73 (209)
|.. =.+.+.+...|..|+++.|+++++.-+... +.+|+.- =..|+
T Consensus 185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvP 264 (531)
T COG3898 185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVP 264 (531)
T ss_pred cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccch
Confidence 444 567889999999999999999998876643 3344322 12222
Q ss_pred ------HHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhH--H--HHHHhcCCCcHhHHHHHHHHHH
Q 045511 74 ------KACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA--H--QIFNSVVFPDVVTWTTIISGLS 143 (209)
Q Consensus 74 ------~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a--~--~~~~~~~~~~~~~~~~li~~~~ 143 (209)
.++.+.|++.++-.+++.+-+....|++. .+..+.+.|+.... . +-+..|...+..+--.+..+-.
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAl 340 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAAL 340 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 22333344444444444444433222221 12223333332211 1 1123333334444444555555
Q ss_pred hCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhc-cccchhHHHHHHHHHHHh
Q 045511 144 KCGFHKEAIDMFCGI-DVKPNANTLVSVLSACS-SLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~~~~~ 193 (209)
..|++..|..--... ...|....|-.|-..-. .-||-.++.+.+.+..+.
T Consensus 341 da~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 341 DAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 556655544333333 44666666655555443 336666666666555444
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.98 E-value=11 Score=27.29 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHH--HHHHhccccHHHHHHHHHHHHHhccCccHh-HHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA--LKACSLAHAHQKGLEIHAHVIKYGHLHDIF-IQNSLL 108 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll 108 (209)
..|-.-+. +++.+..++|+.-|..+.+.|.. +-..+..+ -......|+...|...|+++-...-.|-+. -...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 44544444 56778889999999999988753 22223332 233466788889999999998776555444 223333
Q ss_pred H--HHHhCCChhhHHHHHHhcCCC-c---HhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 109 H--FYVTVKDIFSAHQIFNSVVFP-D---VVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 109 ~--~~~~~g~~~~a~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
. .+..+|.+++...-.+-+..+ + ...-..|--+-.+.|++.+|.+.|..+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 3 345678888888888777432 1 233445555666889999999999888
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.61 E-value=13 Score=31.44 Aligned_cols=67 Identities=6% Similarity=0.109 Sum_probs=44.5
Q ss_pred HHhccccHHHHHHHHHHHHHhccC-ccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-----CcHhHHHHHHHH
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISG 141 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~ 141 (209)
.+-+.|+.++|.+.+.+|.+.... -+..+...|+.++...++++++..++.+-.+ .-...|+..+-.
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 345668888888888887654322 2345777888888888888888888766532 234567766543
No 278
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=85.57 E-value=26 Score=31.19 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=95.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..|...-..+.+.++.++|..-+.+..+.. +-.+..|...=..+...|..++|.+.|..-..-. +-++.+.+++-.++
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345566677778888888887777776643 3455666666666777888899999888776543 23456888999999
Q ss_pred HhCCChhhHHH--HHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 112 VTVKDIFSAHQ--IFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 112 ~~~g~~~~a~~--~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.+.|+...|.. ++.++.+ .+...|--+=..+-+.|+.++|-+.|+.-
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99998888887 8877743 46788989999999999999999999876
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.48 E-value=1.9 Score=21.61 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=12.7
Q ss_pred cHhHHHHHHHHHHhCCChhhHH
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
|...|+.+-..|...|+.++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455666666666666665554
No 280
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=19 Score=29.66 Aligned_cols=125 Identities=10% Similarity=0.005 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHc--CCCccchHHHHHHhhhCCCCCCHHHHHHHHH---HH----------hccccHHHHHHHHHHHHHh-
Q 045511 32 HILNTLLKLLTQ--SSTPQNAIPLYNKMLNCPSSYNHYTFTQALK---AC----------SLAHAHQKGLEIHAHVIKY- 95 (209)
Q Consensus 32 ~~~~~li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~---~~----------~~~~~~~~a~~~~~~m~~~- 95 (209)
..+..++++.+- +++.+.+...|++-.+.+ |+...-..+-. .| .+.|.+..|.+.+.+-+..
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 344444444442 355556666665555533 55444333222 21 4567788888888777644
Q ss_pred --ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhH-HHHH--HHHHHhCCChHHHHHHHhhC
Q 045511 96 --GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVT-WTTI--ISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 96 --g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~a~~~~~~m 158 (209)
.+.|+...|...-....+.|+.++|..--++....|..- .--+ -.++...++|++|.+-|...
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777778888888888887777665544322 2222 23344456677776666554
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.39 E-value=1.3 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=6.1
Q ss_pred HHHHhCCChHHHHHHHh
Q 045511 140 SGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 140 ~~~~~~g~~~~a~~~~~ 156 (209)
..|...|++++|+..|+
T Consensus 9 ~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHTT-HHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHH
Confidence 33333333333333333
No 282
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.88 E-value=1.5 Score=29.92 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHHHHHHH
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 75 (209)
.|.-.+|..+|++|.+.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35555666666666666665552 4444443
No 283
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=13 Score=31.40 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHH-------------------------HHHHHhccccHHHHHHHHHHHHH
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ-------------------------ALKACSLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~-------------------------ll~~~~~~~~~~~a~~~~~~m~~ 94 (209)
++.+.++.+.+...|.+-...--.||..+=.. =-+.+-+.|++..|..-|.++.+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 45555677777777766554433333322000 02334566888888888888887
Q ss_pred hccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHh---HHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHH
Q 045511 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV---TWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSV 170 (209)
Q Consensus 95 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~l 170 (209)
.. +-|...|...--+|.+.|.+..|.+--+...+.|.. .|.-=-.++..-.++++|.+.|.+- ...|+..-+..-
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 76 667788999999999999998888876666543333 2333334444456788888888886 666666666655
Q ss_pred HHHhcc
Q 045511 171 LSACSS 176 (209)
Q Consensus 171 i~~~~~ 176 (209)
+.-|..
T Consensus 466 ~~rc~~ 471 (539)
T KOG0548|consen 466 YRRCVE 471 (539)
T ss_pred HHHHHH
Confidence 666655
No 284
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.37 E-value=2.2 Score=19.78 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=7.7
Q ss_pred HHHHHhCCChhhHHHHH
Q 045511 108 LHFYVTVKDIFSAHQIF 124 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~ 124 (209)
-..+...|++++|+.++
T Consensus 8 a~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444444444444443
No 285
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.34 E-value=3.9 Score=22.41 Aligned_cols=32 Identities=6% Similarity=-0.056 Sum_probs=18.6
Q ss_pred ccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+.|-.+++..+++.|.+.|+..+...+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555556666666666666666665555543
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.33 E-value=2.2 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=18.3
Q ss_pred HhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 165 NTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 165 ~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
.+++.+-..|...|++++|..++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466677777777777777777777653
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=24 Score=31.78 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=88.7
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhh
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 119 (209)
.+.+.|++++|...|-+-... +.|. -+|+-|....+...-...++.+.+.|+ .+...-+.|+.+|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHH
Confidence 344678888887776544322 2232 245555666666667777888888885 345556789999999999999
Q ss_pred HHHHHHhcCCCcHh--HHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 120 AHQIFNSVVFPDVV--TWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 120 a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
-.+..+... .... -....+..+-+.+-.++|..+-...+. +......++. ..+++++|.+.++-+
T Consensus 450 L~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK--HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 999888766 2222 245667777777777777666555422 3334444433 456788887776643
No 288
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.61 E-value=10 Score=25.78 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 045511 54 YNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93 (209)
Q Consensus 54 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 93 (209)
++.+...++.|+.......+.+|.+.+++..|..+|+.++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333344445555555555555555555555555555444
No 289
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.33 E-value=1.5 Score=23.67 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=19.9
Q ss_pred HHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 170 VLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
+-++|...|+.+.|.++++++.+.|-.|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 4567778888888888888777655433
No 290
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=82.99 E-value=7.2 Score=24.29 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=36.7
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHH
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 151 (209)
.+++.+.+.|+- |-.-.=..-+...+.+.|+++++.++..+..+|.+..+++-..|..+.|
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 455666666521 1122222223445677777777777777777777777777777665544
No 291
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=82.28 E-value=21 Score=28.30 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=49.7
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh----------CCChhhH
Q 045511 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT----------VKDIFSA 120 (209)
Q Consensus 51 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----------~g~~~~a 120 (209)
.++|+.|+..++.|.-..+.-+.-.+.+.=.+..+..+++.+....-. |..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456777777777777777777777676666777777777777653322 5556665554 3666666
Q ss_pred HHHHHhcCCCcHhH
Q 045511 121 HQIFNSVVFPDVVT 134 (209)
Q Consensus 121 ~~~~~~~~~~~~~~ 134 (209)
.+++..-+..|...
T Consensus 338 mkLLQ~yp~tdi~~ 351 (370)
T KOG4567|consen 338 MKLLQNYPTTDISK 351 (370)
T ss_pred HHHHhcCCCCCHHH
Confidence 66666554444433
No 292
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.24 E-value=4.8 Score=22.05 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHH
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA 75 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 75 (209)
+....+.|-.+++..++++|.+.|+-.+...|..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 44456778888999999999999998888888887764
No 293
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.61 E-value=14 Score=27.21 Aligned_cols=67 Identities=13% Similarity=-0.021 Sum_probs=42.1
Q ss_pred hhhHHHHHHhcCC----CcHhHHHHHHHHHHhCCChHHHHHHHhhC------CCCCCHHhHHHHHHHhccccchhHHH
Q 045511 117 IFSAHQIFNSVVF----PDVVTWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 117 ~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~p~~~t~~~li~~~~~~g~~~~a~ 184 (209)
-++|.+.|-.+.. -+...--.+..-|. ..+.+++..++.+. +-.+|...+.+|...+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3455666655521 23344444444443 66777777777666 44677788888888888888887764
No 294
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.57 E-value=7.5 Score=31.80 Aligned_cols=151 Identities=11% Similarity=0.002 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh---HHHHHHH
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY--TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF---IQNSLLH 109 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~ 109 (209)
.+.+...++.|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..++ +.|...+.. .-.+.+.
T Consensus 36 ~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~g~tpL~ 107 (413)
T PHA02875 36 ISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL----DLGKFADDVFYKDGMTPLH 107 (413)
T ss_pred CCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH----HcCCcccccccCCCCCHHH
Confidence 34445556666654 445556667655532 1233455556778876654444 444222111 1235566
Q ss_pred HHHhCCChhhHHHHHHhcCCCcHh--HHHHHHHHHHhCCChHHHHHHHhhCCCCCC---HHhHHHHHHHhccccchhHHH
Q 045511 110 FYVTVKDIFSAHQIFNSVVFPDVV--TWTTIISGLSKCGFHKEAIDMFCGIDVKPN---ANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~p~---~~t~~~li~~~~~~g~~~~a~ 184 (209)
..+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+.+..+++. |..++ ..-.+.+.-++ ..|+.+
T Consensus 108 ~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~-~~g~~e--- 182 (413)
T PHA02875 108 LATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAM-AKGDIA--- 182 (413)
T ss_pred HHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHH-HcCCHH---
Confidence 677788888777777765433321 112344555577887776666554 44333 33344444444 456655
Q ss_pred HHHHHHHHhccCCCc
Q 045511 185 AIHAHSLRNLNENNI 199 (209)
Q Consensus 185 ~~~~~~~~~~~~p~~ 199 (209)
+.+.+.+.|..|+.
T Consensus 183 -iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 183 -ICKMLLDSGANIDY 196 (413)
T ss_pred -HHHHHHhCCCCCCc
Confidence 44556677776654
No 295
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.40 E-value=23 Score=30.82 Aligned_cols=159 Identities=11% Similarity=-0.021 Sum_probs=76.6
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhccCcc-------H
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA--HAHQKGLEIHAHVIKYGHLHD-------I 101 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~~~-------~ 101 (209)
...++.+++++..+|....+.-+.+.+.. +-.++...-..+....... -..+....+++.+.......+ .
T Consensus 378 ~~~r~~~lDal~~aGT~~av~~i~~~I~~-~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~ 456 (618)
T PF01347_consen 378 EQARKIFLDALPQAGTNPAVKFIKDLIKS-KKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETAL 456 (618)
T ss_dssp HHHHHHHHHHHHHH-SHHHHHHHHHHHHT-T-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHH
Confidence 46889999999999986655555555555 4334444444444443333 222333333333333333332 3
Q ss_pred hHHHHHHHHHHhCC---------C---hhhHHHHHHh-c----CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CC-CC
Q 045511 102 FIQNSLLHFYVTVK---------D---IFSAHQIFNS-V----VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DV-KP 162 (209)
Q Consensus 102 ~~~~~ll~~~~~~g---------~---~~~a~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~-~p 162 (209)
.++.++++-+|... . .++..+.+.. . ...|...--..|+++++.|....+..+..-+ +. ..
T Consensus 457 L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 457 LSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S
T ss_pred HHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcccc
Confidence 46778888888774 1 1111111111 1 2334455567789999999876443333333 33 33
Q ss_pred CHHhHHHHHHHhc--cccchhHHHHHHHHH
Q 045511 163 NANTLVSVLSACS--SLGSRKLGKAIHAHS 190 (209)
Q Consensus 163 ~~~t~~~li~~~~--~~g~~~~a~~~~~~~ 190 (209)
+...=...|.++. ..-..+++.+++-.+
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I 566 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEKVREILLPI 566 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 4444445566665 333445555555544
No 296
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.03 E-value=8.8 Score=28.82 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHH---hcCC---CcHhHHHHHHHH
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN---SVVF---PDVVTWTTIISG 141 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~---~~~~---~~~~~~~~li~~ 141 (209)
|.+..++.+.+.+.+.++.....+-.+.. +.|..+-..+++.||-.|++++|..=++ .|.. +....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 55667778888889999888877776664 5677788889999999999999965554 4422 446678877775
Q ss_pred HHhCCChHHHHHHHhhC---CCC--CCHHhHHHHHHHh-ccccchhHHHHHHHH-HHHh
Q 045511 142 LSKCGFHKEAIDMFCGI---DVK--PNANTLVSVLSAC-SSLGSRKLGKAIHAH-SLRN 193 (209)
Q Consensus 142 ~~~~g~~~~a~~~~~~m---~~~--p~~~t~~~li~~~-~~~g~~~~a~~~~~~-~~~~ 193 (209)
-... -++|..= |+. |...=...++.+. ++.+...++.+-+.+ ..+.
T Consensus 82 ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~a 134 (273)
T COG4455 82 EAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKA 134 (273)
T ss_pred HHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhh
Confidence 4332 1344332 221 2333334444444 344445555555443 3444
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.78 E-value=23 Score=27.11 Aligned_cols=158 Identities=12% Similarity=0.096 Sum_probs=103.2
Q ss_pred hhccCCCcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCHHHHHHHHHHHhcc----
Q 045511 6 LKSLKPTLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYTFTQALKACSLA---- 79 (209)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~---- 79 (209)
++.|+.++|.+.+..+...++..|=. .+-=.++-++-+.++.++|...+++..+.- -.|| .-|..-|.+.+.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 46788888888888888776554433 555667777889999999999999987643 3444 3355555555432
Q ss_pred ---ccHHHHHH---HHHHHHHh----ccCccHhHH------------HHHHHHHHhCCChhhHHHHHHhcCC--C----c
Q 045511 80 ---HAHQKGLE---IHAHVIKY----GHLHDIFIQ------------NSLLHFYVTVKDIFSAHQIFNSVVF--P----D 131 (209)
Q Consensus 80 ---~~~~~a~~---~~~~m~~~----g~~~~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~--~----~ 131 (209)
++...+.+ -|+.+.++ ...||+..- ..+-+.|.++|.+..|..-+++|.+ + .
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 23333333 34444443 233443321 3556788999999999888888842 2 2
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH
Q 045511 132 VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
....-.|..+|-.-|..++|...-+-+ -=.||.
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 345666778888899888887776666 234444
No 298
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.74 E-value=13 Score=24.19 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
..++|.-|-+.+...+-. ...+--.-+.++..+|++++|..+.+....||...|-++-.+ +.|..+....-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 456777776666655422 233333344567788888888888888888888888776543 466666666666566
No 299
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.72 E-value=3.4 Score=32.28 Aligned_cols=48 Identities=4% Similarity=-0.053 Sum_probs=36.5
Q ss_pred CCCCCHHh-HHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 159 DVKPNANT-LVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 159 ~~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
.+.||..+ |+..|+...+.||+++|..++++.++.|+.--..+|-.-|
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 45577765 6788888889999999999999988888776655554443
No 300
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.68 E-value=11 Score=27.43 Aligned_cols=50 Identities=10% Similarity=-0.087 Sum_probs=27.9
Q ss_pred ccccHHHHHHHHHHHHHh-ccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 78 LAHAHQKGLEIHAHVIKY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..++.+......+...+. ...|++.+|..++..+...|+.++|.++..++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444443333322 24566666666666677777777776666655
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.60 E-value=2.7 Score=20.41 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=3.6
Q ss_pred hCCChHHHHHH
Q 045511 144 KCGFHKEAIDM 154 (209)
Q Consensus 144 ~~g~~~~a~~~ 154 (209)
..|++++|++.
T Consensus 13 ~~~~~~~A~~~ 23 (34)
T PF07719_consen 13 QLGNYEEAIEY 23 (34)
T ss_dssp HTT-HHHHHHH
T ss_pred HhCCHHHHHHH
Confidence 33333333333
No 302
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.11 E-value=27 Score=27.44 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=97.9
Q ss_pred chhccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHH
Q 045511 5 GLKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 84 (209)
++....|++.. .++...+...+....+.. -......|+..+|..+|+......- -+...--.+...+...|+.+.
T Consensus 112 gF~G~qPesql---r~~ld~~~~~~~e~~~~~-~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~ 186 (304)
T COG3118 112 GFQGAQPESQL---RQFLDKVLPAEEEEALAE-AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEA 186 (304)
T ss_pred ccCCCCcHHHH---HHHHHHhcChHHHHHHHH-hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHH
Confidence 33344444444 333344333333344433 2346678888899998888877532 234556677788888899999
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc-CCC-cHhHHHHHHHHHHhCCChHHHHHHHhhC----
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFP-DVVTWTTIISGLSKCGFHKEAIDMFCGI---- 158 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m---- 158 (209)
+..+++.+...--....+....=|..+.+.....+...+-.+. ..| |...=-.+-..+...|+.+.|.+.+-.+
T Consensus 187 A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 187 AQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999988765443333333333344444444444333333333 234 4555556677788888888887766665
Q ss_pred -CCCCCHHhHHHHHHHhccccchh
Q 045511 159 -DVKPNANTLVSVLSACSSLGSRK 181 (209)
Q Consensus 159 -~~~p~~~t~~~li~~~~~~g~~~ 181 (209)
|.. |...=..++..+.-.|..+
T Consensus 267 ~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 267 RGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred cccc-CcHHHHHHHHHHHhcCCCC
Confidence 333 3444455555555555333
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.93 E-value=25 Score=27.00 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHhcC--------CCcH-hHHHHHHHHHHhCCChHHHHHHHhhC----CC--CCCHHhHH
Q 045511 104 QNSLLHFYVTVKDIFSAHQIFNSVV--------FPDV-VTWTTIISGLSKCGFHKEAIDMFCGI----DV--KPNANTLV 168 (209)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~~~--------~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m----~~--~p~~~t~~ 168 (209)
+...-+.+.+-..+++|-..|.+-. -++. ..|-+.|-.|....++..|...|+.- ++ .-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3444445555555555544443321 1121 23455566667778899999999884 22 22557888
Q ss_pred HHHHHhccccchhHHHHHHH
Q 045511 169 SVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~ 188 (209)
.||.+| ..||.+.+..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 999988 6788888887765
No 304
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.92 E-value=17 Score=26.40 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHhccCccH-------hHHHHHHHHHHhCCChhhHHHHHHhc-CCCcHhHHHHHHHHHHhCC
Q 045511 81 AHQKGLEIHAHVIKYGHLHDI-------FIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIISGLSKCG 146 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~li~~~~~~g 146 (209)
-++.|..+++.+.+.--.|.. .+--..+-.|.++|.+++|.++++.. .+++....-.-+....+.+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 367888888888766533321 12345566899999999999999887 3454444333333333333
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.90 E-value=14 Score=24.04 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=44.3
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhH
Q 045511 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 202 (209)
++.+.+.|++++|..+...+ ..||...+-.+-. -+.|..+....-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~-~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL-CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCC-CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45677899999999999886 6899988866533 36777777777777787777 4444443
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.52 E-value=22 Score=26.20 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc-------CCCcHhHHHHHHHHHHhCCChHHH
Q 045511 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-------VFPDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a 151 (209)
.|.+.|-.+...+.--++...-.|-..|. ..+.+++.+++... ..+|...+.+|.+.|-+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443333333333333333 33444444444333 124455555555555555555554
No 307
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.35 E-value=8.3 Score=27.97 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=20.8
Q ss_pred CCCCCHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
...|+..+|..++.++...|+.++|++...++.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666666666666655543
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.22 E-value=27 Score=26.87 Aligned_cols=76 Identities=11% Similarity=-0.017 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC-------CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh---ccCCCchhH
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI-------DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN---LNENNIILD 202 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m-------~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~ 202 (209)
.+..+-+.|.+-..+++|-..|.+- .--|+. ..|...|-.+....|+..|+..++.-.+- .-.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3444556666666666654444333 112333 23555555666677888888777652222 112244455
Q ss_pred hHhhhcC
Q 045511 203 NAVLDFM 209 (209)
Q Consensus 203 ~~li~~y 209 (209)
..|+.+|
T Consensus 232 enLL~ay 238 (308)
T KOG1585|consen 232 ENLLTAY 238 (308)
T ss_pred HHHHHHh
Confidence 5565554
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=78.81 E-value=47 Score=29.64 Aligned_cols=69 Identities=7% Similarity=0.004 Sum_probs=40.2
Q ss_pred HhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHH----------hccccHHHHHHHHHHHHH
Q 045511 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC----------SLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 25 ~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~----------~~~~~~~~a~~~~~~m~~ 94 (209)
....|.+..|..+...-.+.-.++-|...|-+...- |.+.....+=..+ +--|++++|++++-++-+
T Consensus 686 iEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 686 IEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 345588888888887777777777777777665442 2221111111111 223778888888776655
Q ss_pred hc
Q 045511 95 YG 96 (209)
Q Consensus 95 ~g 96 (209)
+.
T Consensus 763 rD 764 (1189)
T KOG2041|consen 763 RD 764 (1189)
T ss_pred hh
Confidence 54
No 310
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.45 E-value=16 Score=24.00 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
-..++|..|.+.+...+- ....+--.-+.++.++|++++|...=.....||...|-++-. .+.|-.+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 357889999988887763 333444455667888999999955444556788888877654 4688888888888877
No 311
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=78.27 E-value=19 Score=24.78 Aligned_cols=83 Identities=13% Similarity=-0.029 Sum_probs=56.8
Q ss_pred HHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC----CcHhHHHHHH---HHHHhCCC
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF----PDVVTWTTII---SGLSKCGF 147 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li---~~~~~~g~ 147 (209)
+.+..|+++.|.+.|.+-+.-- +.....||.--.++--.|+.++|..-+++..+ .+.....+.+ ..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567789999999998887653 45678899999999999999999888877622 2222222222 23445677
Q ss_pred hHHHHHHHhhC
Q 045511 148 HKEAIDMFCGI 158 (209)
Q Consensus 148 ~~~a~~~~~~m 158 (209)
-+.|..=|...
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 77776665544
No 312
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=77.54 E-value=30 Score=26.62 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=98.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH--------H-HHHHHHHHHHHhccCccHh
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH--------Q-KGLEIHAHVIKYGHLHDIF 102 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~--------~-~a~~~~~~m~~~g~~~~~~ 102 (209)
...+.++..+.+.+....|..+.+.+.. ++-=.++...++......... + .-..+.+.+.+ ..
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~--l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~------f~ 154 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRS--LPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQE------FP 154 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhcc--CCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHc------Cc
Confidence 4457888888898988899999888875 333456666666654333221 1 11122222221 12
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC----CCCC-----CHHhHHHHHHH
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKP-----NANTLVSVLSA 173 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~p-----~~~t~~~li~~ 173 (209)
.|-.++..|.|.-+...=..+|+....|. .++.-|.+.|+.+.|-.++--+ +... +...-..++..
T Consensus 155 ~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~ 229 (258)
T PF07064_consen 155 EYLEIVVNCARKTEVRYWPYLFDYLGSPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVM 229 (258)
T ss_pred chHHHHHHHHHhhHHHHHHHHHHhcCCHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 35666777777777777777787765332 5677777899998886555444 3333 44566778888
Q ss_pred hccccchhHHHHHHHHHHHhc
Q 045511 174 CSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~ 194 (209)
....++++.+.++.+.++.-+
T Consensus 230 a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 230 ALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHhcccHHHHHHHHHHHHHhC
Confidence 999999999999999886653
No 313
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=77.33 E-value=15 Score=23.12 Aligned_cols=39 Identities=5% Similarity=0.014 Sum_probs=25.4
Q ss_pred hCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHH
Q 045511 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 151 (209)
...+.+.+.++++.++..+..+|..+..++-..|....|
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLC 84 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHH
Confidence 335567777777777777777777777777655544433
No 314
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.97 E-value=6.7 Score=21.10 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=12.9
Q ss_pred HHHHhccccHHHHHHHHHHHHHh
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
-.+|...|+.+.|.++++++.+.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34555556666666666555543
No 315
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.61 E-value=19 Score=31.14 Aligned_cols=159 Identities=9% Similarity=0.017 Sum_probs=52.9
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+...|..-+..+..+++.. ...++.+..+-...+...-..++..|.+.|..+.+.++.+.+-++-+. ..-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 5566777777777665433 666666666554567788899999999999999999998887766432 346777788
Q ss_pred HHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC----CCCCCH---HhHHHHHHHhccccchhH
Q 045511 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPNA---NTLVSVLSACSSLGSRKL 182 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~p~~---~t~~~li~~~~~~g~~~~ 182 (209)
-+.+.|+...+..+-+.+ +..|+..|... ..++.+.+ .+.+.. .+|.-+.+.+ +.|+..+
T Consensus 447 ~~~ra~d~~~v~~i~~~l-----------l~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~-~~~~~~~ 513 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRL-----------LEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELY-DEGDFRE 513 (566)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHH-----------HHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHH-hhhhHHH
Confidence 888888877666655543 34444444322 12222222 111111 1222233322 3477777
Q ss_pred HHHHHHHHHHhccCCCchhHhHh
Q 045511 183 GKAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 183 a~~~~~~~~~~~~~p~~~~~~~l 205 (209)
|.+.+-.+.+..+-|...-..-|
T Consensus 514 Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 514 AASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHCCCCCcHHHHHHHH
Confidence 87777777777777765443333
No 316
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=76.33 E-value=8.3 Score=23.64 Aligned_cols=80 Identities=10% Similarity=-0.034 Sum_probs=31.8
Q ss_pred HHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHH---hHHHHHHHhccccchhHHHHHH
Q 045511 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLSACSSLGSRKLGKAIH 187 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~~g~~~~a~~~~ 187 (209)
.++.|+++-...+++.-...+. -+..+...+..|+.+-+..+++. |..|+.. -.+.+.-+ +..|+.+ +.
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A-~~~~~~~----~~ 75 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYA-AENGNLE----IV 75 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHH-HHTTHHH----HH
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHH-HHcCCHH----HH
Confidence 3445555555555553222222 11133333445554444444433 3333332 22333332 2344433 44
Q ss_pred HHHHHhccCCC
Q 045511 188 AHSLRNLNENN 198 (209)
Q Consensus 188 ~~~~~~~~~p~ 198 (209)
+.+.+.|..++
T Consensus 76 ~~Ll~~g~~~~ 86 (89)
T PF12796_consen 76 KLLLEHGADVN 86 (89)
T ss_dssp HHHHHTTT-TT
T ss_pred HHHHHcCCCCC
Confidence 44555555554
No 317
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.59 E-value=30 Score=25.19 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=45.1
Q ss_pred CccchHHHHHHhhhCCCCC--CHHHHHHH-----HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC
Q 045511 46 TPQNAIPLYNKMLNCPSSY--NHYTFTQA-----LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115 (209)
Q Consensus 46 ~~~~a~~l~~~m~~~g~~p--~~~t~~~l-----l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 115 (209)
.++.|+.+|+.+.++--.| -......+ +-.|.+.|.+++|.++++..... |+....-.-+...++..
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 3556899999888775444 22333333 45789999999999999998873 45544455555555543
No 318
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=74.25 E-value=16 Score=23.25 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHH
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMF 155 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 155 (209)
+..+++.+.+.|+ .+..-+..+ .+.....+.|.++++.+..++..+|..+++++ +..+...+..++
T Consensus 25 v~~ilD~Ll~~~V-lt~ee~e~I---~~~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L-~e~~~~L~~~L~ 90 (94)
T cd08329 25 VLPILDSLLSANV-ITEQEYDVI---KQKTQTPLQARELIDTVLVKGNAAAEVFRNCL-KKNDPVLYRDLF 90 (94)
T ss_pred hHHHHHHHHHcCC-CCHHHHHHH---HcCCChHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCHhHHHHHH
Confidence 4556677776662 333333322 22444467777888777777777777777777 334444444443
No 319
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.19 E-value=19 Score=22.64 Aligned_cols=68 Identities=9% Similarity=-0.056 Sum_probs=47.3
Q ss_pred chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHH
Q 045511 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122 (209)
Q Consensus 49 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 122 (209)
.+.++++.+.+.|+ .+..-...+-.+-...|+.+.|.+++..+. +| +..|...+.++-..|.-.-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 35567777777775 344445555554456788899999998887 55 5667888888888877665543
No 320
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=73.85 E-value=25 Score=24.39 Aligned_cols=64 Identities=9% Similarity=-0.037 Sum_probs=39.6
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 52 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
++.+.+++.|++++.. =..++..+...++.-.|.++++.+.+.+...+..|-=.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3455666777666543 345566666666667788888888877766665544444555555553
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=73.59 E-value=83 Score=29.77 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=25.5
Q ss_pred HHHHHhCCChhhHHHHHHhcCCC-cHhH--HHHHHHHHHhCCChHHHHHHHhhC
Q 045511 108 LHFYVTVKDIFSAHQIFNSVVFP-DVVT--WTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+.+|-.+|++.+|+.+-.++..+ +... --.|+.-+...+++-+|-++..+-
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 45555556666666555555332 2111 134555555555555555555444
No 322
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=73.54 E-value=33 Score=25.17 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=54.9
Q ss_pred cHhHHHHHHHHHHhCCChhhHHHHHHhcCC------CcHhHHHHHHH-HHHhCCC--hHHHHHHHhhC--CCCCCHH---
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF------PDVVTWTTIIS-GLSKCGF--HKEAIDMFCGI--DVKPNAN--- 165 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m--~~~p~~~--- 165 (209)
+..-+....-.....|++++|.+-++++.+ .-...|.-+.. ++|..+. +-+|.-+|.-+ +..|+..
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~ 107 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcC
Confidence 344555666666777788888887777632 23345555554 6666664 34555555554 4444432
Q ss_pred -hHHHHHHHhc--------------cccchhHHHHHHHHHHH
Q 045511 166 -TLVSVLSACS--------------SLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 166 -t~~~li~~~~--------------~~g~~~~a~~~~~~~~~ 192 (209)
.+...|.+.+ +.|+++.|++++..|.+
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2333344333 36889999998887754
No 323
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.52 E-value=75 Score=29.19 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCC---CCCCHHHHHHHHHHHhccccH--HHHHHHHHHHHHhccCccHhHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCP---SSYNHYTFTQALKACSLAHAH--QKGLEIHAHVIKYGHLHDIFIQNS 106 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~~ 106 (209)
.-|..|+..|...|..++|+++|.+.-.+. -.--..-+..++...-+.+.. +.+++.-++..+....-...+++.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 578999999999999999999999997743 111123345567776666655 777777777776553333333332
Q ss_pred ------------HHHHHHhCCChhhHHHHHHhc----CCCcHhHHHHHHHHHHhC
Q 045511 107 ------------LLHFYVTVKDIFSAHQIFNSV----VFPDVVTWTTIISGLSKC 145 (209)
Q Consensus 107 ------------ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~ 145 (209)
-+-.|++....+-+..+++.+ ...+..-.|.++..|+..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 334555666666677777666 235666777777777653
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.27 E-value=41 Score=26.05 Aligned_cols=152 Identities=10% Similarity=-0.038 Sum_probs=91.9
Q ss_pred chhccCCCcchHhHHHHHHHH-hhCCCc------ccHHHHHHHHHcCCCccchHHHHHHhhhC--------CCCCCH---
Q 045511 5 GLKSLKPTLSFKQLNQIHAQI-IKIPQP------HILNTLLKLLTQSSTPQNAIPLYNKMLNC--------PSSYNH--- 66 (209)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~~-~~~p~~------~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------g~~p~~--- 66 (209)
+++.++.+.|.-.+.+..... ...|+. ..||.-...+.+..+++.|..++++-.+- ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 346677777777777766665 333433 55666666555554777777776665432 233443
Q ss_pred --HHHHHHHHHHhccccHHH---HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-C--cHhHHHHH
Q 045511 67 --YTFTQALKACSLAHAHQK---GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-P--DVVTWTTI 138 (209)
Q Consensus 67 --~t~~~ll~~~~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~--~~~~~~~l 138 (209)
.++..++.++...+..+. |.++++.+.+. .+-.+.++-.-+..+.+.++.+++.+++..|.. . ....+..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 456777888877776654 55556556433 233355665667777779999999999998842 1 34555555
Q ss_pred HHHH---HhCCChHHHHHHHhhC
Q 045511 139 ISGL---SKCGFHKEAIDMFCGI 158 (209)
Q Consensus 139 i~~~---~~~g~~~~a~~~~~~m 158 (209)
+..+ ... ....+...+..+
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~ 183 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYL 183 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHH
Confidence 5555 333 334555666555
No 325
>PF13934 ELYS: Nuclear pore complex assembly
Probab=72.72 E-value=38 Score=25.45 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=61.9
Q ss_pred HHHHHHHHhcc--ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCC--cHhHHHHHHHHHHh
Q 045511 69 FTQALKACSLA--HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSK 144 (209)
Q Consensus 69 ~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~ 144 (209)
|...+.++-.. +++++|.+.+ .+..+.|+-. .-++..+..+|+...|..++..+..+ +...-+.++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL---SHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 56666666444 4555555555 2222222222 24888888899999999999987432 33444555555 56
Q ss_pred CCChHHHHHHHhhCCCCCCHHhHHHHHHHhc
Q 045511 145 CGFHKEAIDMFCGIDVKPNANTLVSVLSACS 175 (209)
Q Consensus 145 ~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~ 175 (209)
++.+.+|+.+-+...-.-....+..++..|.
T Consensus 153 ~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred cCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 6899999988887510111346666666665
No 326
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.35 E-value=35 Score=24.83 Aligned_cols=132 Identities=13% Similarity=0.030 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh-HHHHHHHHHHhCCChhhHHHHHHhcCC--CcHhHH---HHH
Q 045511 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF-IQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTW---TTI 138 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~l 138 (209)
....|...++. ++.+..++|+.-|..+.+.|..--++ .-...-......|+...|...|+++.. +..... --|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44566666664 56778899999999999988654433 233344456788999999999999832 111111 111
Q ss_pred --HHHHHhCCChHHHHHHHhhC--CCCCCHH-hHHHHHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 139 --ISGLSKCGFHKEAIDMFCGI--DVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 139 --i~~~~~~g~~~~a~~~~~~m--~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
--.+..+|.++++..-..-+ .-.|-.+ .=..|--+-.+.|++.+|...|..+...--.|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12356788999888877777 2233222 23444445568999999999999887654444
No 327
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.55 E-value=48 Score=26.16 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHH-------HHHHHHHHhccccHHHHHHHHHHHH----HhccCccHhHHH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT-------FTQALKACSLAHAHQKGLEIHAHVI----KYGHLHDIFIQN 105 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~m~----~~g~~~~~~~~~ 105 (209)
+.+..++.+++++|...+.+....|+..|..+ ..-+.+.|.+.|+....-++..... +-..+..+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34456778899999999999999998766554 4456677777777665554443332 222233445566
Q ss_pred HHHHHHHhC-CChhhHHHHHHhcCCC---c------HhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 106 SLLHFYVTV-KDIFSAHQIFNSVVFP---D------VVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 106 ~ll~~~~~~-g~~~~a~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+|+..+-.. ..+++..++.....++ . ...=.-+|..+.+.|.+.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 666655543 3455666665544221 1 112245688888999999888766554
No 328
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.16 E-value=48 Score=25.96 Aligned_cols=26 Identities=8% Similarity=-0.095 Sum_probs=12.9
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHh
Q 045511 168 VSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+-+-+.+...|++.+...++.++.++
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555433
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.10 E-value=49 Score=26.08 Aligned_cols=165 Identities=14% Similarity=0.069 Sum_probs=95.2
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCC----CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS----SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 105 (209)
+...|.++... +.++.+++...++.....-. ......|........+...+.+.+++.+...... .+.....
T Consensus 30 ~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~ 105 (352)
T PF02259_consen 30 EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLK 105 (352)
T ss_pred hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHH
Confidence 33444444443 77888888888777765321 1123445555555555556666666655543221 1123333
Q ss_pred HHHHHHHh-----CCChhhHHHHHH---hc------CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-----CHH
Q 045511 106 SLLHFYVT-----VKDIFSAHQIFN---SV------VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-----NAN 165 (209)
Q Consensus 106 ~ll~~~~~-----~g~~~~a~~~~~---~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-----~~~ 165 (209)
.++..... .++++.-..++. .+ +.....+|..+.+.+.+.|+++.|...+..+ +..+ +..
T Consensus 106 ~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~ 185 (352)
T PF02259_consen 106 SLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPR 185 (352)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcc
Confidence 33333322 233333333321 11 1234567888899999999999999999888 3221 334
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHHhccCCC
Q 045511 166 TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198 (209)
Q Consensus 166 t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 198 (209)
..-.-.+..-..|+..+|...+....+..+...
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 444456777778899999999988887655544
No 330
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.00 E-value=30 Score=28.24 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHh
Q 045511 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVT 113 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~ 113 (209)
.-+...++.|+.+.+..+++.-....-..+..- .+.+...+..|+. ++++.+.+.|..|+... -.+.+...+.
T Consensus 70 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~ 144 (413)
T PHA02875 70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVM 144 (413)
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence 345556677777665555542211100011111 2233444556665 45666677787665432 2456777778
Q ss_pred CCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHh---HHHHHHHhccccchhHHHHHH
Q 045511 114 VKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT---LVSVLSACSSLGSRKLGKAIH 187 (209)
Q Consensus 114 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t---~~~li~~~~~~g~~~~a~~~~ 187 (209)
.|+.+-+..+++.-..+ |..-++.+ ...+..|+.+-+..+++. |..|+... .++.+...+..|+.+ +.
T Consensus 145 ~~~~~~v~~Ll~~g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 145 MGDIKGIELLIDHKACLDIEDCCGCTPL-IIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 89988888887764332 22233333 334456777766555544 55555432 234455444666665 44
Q ss_pred HHHHHhccCCCc
Q 045511 188 AHSLRNLNENNI 199 (209)
Q Consensus 188 ~~~~~~~~~p~~ 199 (209)
+.+.++|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 555667777664
No 331
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=70.94 E-value=17 Score=23.76 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666666666666556666666666666555543
No 332
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.94 E-value=34 Score=30.28 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=38.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhc--cCccHhHHHHHHHHHHhCCChh------hHHHHHHhc-CCCcHhHHHHHHHH
Q 045511 71 QALKACSLAHAHQKGLEIHAHVIKYG--HLHDIFIQNSLLHFYVTVKDIF------SAHQIFNSV-VFPDVVTWTTIISG 141 (209)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~-~~~~~~~~~~li~~ 141 (209)
.++.+|...|++..+.++++...... -+.=...||..|+..+++|.++ .|.++++.. ..-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 66777777777777777766655332 2222345666666666666543 223333322 22345555555544
Q ss_pred H
Q 045511 142 L 142 (209)
Q Consensus 142 ~ 142 (209)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 333
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=70.13 E-value=14 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcCCC
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVVFP 130 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 130 (209)
..++..|...|+.++|...+.++..|
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 44555666667777777777776444
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.93 E-value=51 Score=25.80 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=59.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc-CC---CcHhHHHHHHHHH-----
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VF---PDVVTWTTIISGL----- 142 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~li~~~----- 142 (209)
=|++++..+++.++..+.-+.-+..-+.-+.+...-|-.|.|.|++..+.++-..- .. .+..-|.++...|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 37888999999998888655544333334556666777899999999888776554 22 2334466665544
Q ss_pred HhCCChHHHHHHHh
Q 045511 143 SKCGFHKEAIDMFC 156 (209)
Q Consensus 143 ~~~g~~~~a~~~~~ 156 (209)
.-.|.+++|+++..
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 55699999988874
No 335
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.74 E-value=6.8 Score=30.68 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=20.2
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCC
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY 64 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 64 (209)
-||.-|..-.+.|++++|+.++++.++.|+.-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 34566666666666666666666666666543
No 336
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.41 E-value=73 Score=27.38 Aligned_cols=49 Identities=12% Similarity=-0.049 Sum_probs=34.7
Q ss_pred CChHHHHHHHhhC----CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 146 GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 146 g~~~~a~~~~~~m----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.+.+..+++...+ |..--.+.+.-+.+.|....++.+|.+++..+.++.
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 3455555555555 555566777788888888999999999988766553
No 337
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=69.29 E-value=30 Score=22.94 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=28.1
Q ss_pred HhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCC
Q 045511 16 KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP 61 (209)
Q Consensus 16 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 61 (209)
+.+.++...+...|...+..-+-..++-+. ..|..++++|.+.|
T Consensus 4 ~~y~~L~~~~~~~~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~g 47 (115)
T PF12793_consen 4 EQYQRLWQHYGGQPVEVTLDELAELLFCSR--RNARTLLKKMQEEG 47 (115)
T ss_pred HHHHHHHHHcCCCCcceeHHHHHHHhCCCH--HHHHHHHHHHHHCC
Confidence 455666666666566667766666665543 35667777777766
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.05 E-value=7.4 Score=18.50 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=13.9
Q ss_pred HHhccccchhHHHHHHHHHHHh
Q 045511 172 SACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.++.+.|+.++|.+.|+.+.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3445567777777777766554
No 339
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=68.90 E-value=37 Score=23.72 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=114.3
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhC-CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNC-PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
...+......+...+....+...+...... ........+..........+....+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 467777888888888888888888887753 334555667777777777788888888888887654333 222222223
Q ss_pred -HHHhCCChhhHHHHHHhcCC--C----cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC--HHhHHHHHHHhccccc
Q 045511 110 -FYVTVKDIFSAHQIFNSVVF--P----DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN--ANTLVSVLSACSSLGS 179 (209)
Q Consensus 110 -~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~--~~t~~~li~~~~~~g~ 179 (209)
.+...|+++.|...+..... | ....+......+...++.+.+...+.+. ...|+ ...+..+-..+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 78899999999999987632 1 2233333344466788999999999888 55555 5677777788888888
Q ss_pred hhHHHHHHHHHHHh
Q 045511 180 RKLGKAIHAHSLRN 193 (209)
Q Consensus 180 ~~~a~~~~~~~~~~ 193 (209)
.+.+...+......
T Consensus 218 ~~~a~~~~~~~~~~ 231 (291)
T COG0457 218 YEEALEYYEKALEL 231 (291)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888776554
No 340
>PRK09857 putative transposase; Provisional
Probab=68.60 E-value=42 Score=26.38 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccC
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL 98 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 98 (209)
..++....+.++.++..++++.+.+. .+......-++..-..+.|..+++.++-..|+..|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444444444444444444444433 1112222222333333334334444444444444443
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.12 E-value=12 Score=17.96 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHh
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
+|..+-..|...|++++|.+.|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555566666666666666654
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.95 E-value=46 Score=26.30 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccc
Q 045511 135 WTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGS 179 (209)
Q Consensus 135 ~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~ 179 (209)
++..-+.|..+|.+.+|.++-++. .+.| +...+-.+++.+...||
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 344445555555555555555554 2222 33344455555555555
No 343
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=67.70 E-value=13 Score=27.67 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=62.4
Q ss_pred CccchHHHHHHhhhCCCC-------CCHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHhccCc-cHhHHHHHH
Q 045511 46 TPQNAIPLYNKMLNCPSS-------YNHYTFTQALKACSLAH---------AHQKGLEIHAHVIKYGHLH-DIFIQNSLL 108 (209)
Q Consensus 46 ~~~~a~~l~~~m~~~g~~-------p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~m~~~g~~~-~~~~~~~ll 108 (209)
..+.|..++..|--..++ -...-|..+-++|++.| +++-.+++++..++.|++. =+++|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 345677777777544332 35566899999999987 5677888999999999654 357999999
Q ss_pred HHHHhCCChhhHHHHHHhc
Q 045511 109 HFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~ 127 (209)
+-=....++++..+++..+
T Consensus 216 Dk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred ccccCCCCHHHHHHHHHHh
Confidence 8888888899999988765
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.97 E-value=89 Score=27.44 Aligned_cols=130 Identities=12% Similarity=-0.030 Sum_probs=81.0
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhh
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 119 (209)
...+.|+++.|.++..+.. +..-|..|-.+..+.+++..|.+.|..-. -|..|+-.+...|+-+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhH
Confidence 3456788888888866553 55778888888899999988888876543 35567777777777665
Q ss_pred HHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 120 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
..++=....+ ....|.-.-+|...|+++++.+++-+-+.-|....+ -+.|. +++..++....++.
T Consensus 711 l~~la~~~~~--~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~---ArtYl----ps~vs~iv~~wk~~ 775 (794)
T KOG0276|consen 711 LAVLASLAKK--QGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALF---ARTYL----PSQVSRIVELWKED 775 (794)
T ss_pred HHHHHHHHHh--hcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHH---HhhhC----hHHHHHHHHHHHHH
Confidence 4444333321 112334445566688999988888775444554433 22232 34555555554443
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.92 E-value=29 Score=30.97 Aligned_cols=119 Identities=10% Similarity=0.020 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..+-.+|..+.-.|++++|-++.-.|... +..-|...+..+...+.... ++..+....-..++..|.-++..+
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~ 465 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD---IAPYLPTGPPRLKPLVYEMVLVEF 465 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch---hhccCCCCCcccCchHHHHHHHHH
Confidence 67888899999999999999998888764 45667777777777766543 233333332334566777777776
Q ss_pred HhCCChhhHHHHHHhcC--------------------CCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 112 VTVKDIFSAHQIFNSVV--------------------FPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~--------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.. .+...-.++..+-+ ..+...-..|...|...+++..|+.++-..
T Consensus 466 L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 466 LA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 66 33333333332211 012223344888899999999998888774
No 346
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.83 E-value=29 Score=23.69 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=35.1
Q ss_pred CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
.+-|+......-+++|-+.+|+..|..+|+-++.+ +.+....|-.++
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 88899999999999999999999999998766443 344434555544
No 347
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.47 E-value=5.8 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=24.2
Q ss_pred ccchhHHHHHHHHHHHhccCCCchhHhHhhhc
Q 045511 177 LGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208 (209)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 208 (209)
-|.-..|..+|..|+++|-.||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 36667788999999999999984 7887753
No 348
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=65.80 E-value=65 Score=25.41 Aligned_cols=60 Identities=12% Similarity=-0.066 Sum_probs=47.6
Q ss_pred ccHhHHHHHHHHHHhCCChhhHHHHHHhcCCC-------cHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-------DVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
....+|..+.+.+.+.|.++.|...+..+... .....-.-.+.+-..|+.++|+..+++.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44568999999999999999999999887431 3445555677788889999999888775
No 349
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=65.09 E-value=2.1 Score=35.51 Aligned_cols=144 Identities=7% Similarity=0.056 Sum_probs=82.0
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHH-HHHHH-HhCCChhhHHHHHHhcC--CCc----
Q 045511 60 CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS-LLHFY-VTVKDIFSAHQIFNSVV--FPD---- 131 (209)
Q Consensus 60 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-ll~~~-~~~g~~~~a~~~~~~~~--~~~---- 131 (209)
.|+.||.++|.+=..+--+.-+...|.+.++.+. ||...-.. ..+.- ...|.-..-+++|+.+. .|.
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ 483 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEM 483 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHH
Confidence 4566787777766666566667777888877664 22221111 11111 12234556678888873 333
Q ss_pred ------HhHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCHHhHH-HHHHHhccccchhHHHHHHHHHHHhccCCCchh
Q 045511 132 ------VVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLV-SVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201 (209)
Q Consensus 132 ------~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 201 (209)
...|++|..++.++=.|.+ ..+=.+| +-..+.++.. .=...-+.+.+...+.++-++-+-.-+.|.+.|
T Consensus 484 ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~t 562 (650)
T KOG4334|consen 484 CTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLT 562 (650)
T ss_pred hhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhh
Confidence 2468999999988766643 2233344 2222222210 001111233456677777776666667999999
Q ss_pred HhHhhhcC
Q 045511 202 DNAVLDFM 209 (209)
Q Consensus 202 ~~~li~~y 209 (209)
|.+|++.|
T Consensus 563 wGSlLriY 570 (650)
T KOG4334|consen 563 WGSLLRIY 570 (650)
T ss_pred HHHHHHHh
Confidence 99999887
No 350
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=64.67 E-value=15 Score=22.10 Aligned_cols=39 Identities=10% Similarity=-0.046 Sum_probs=27.8
Q ss_pred cCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc
Q 045511 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 81 (209)
-.|+.+.+.+++++....|..|.......+.-+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888877777766667766665554
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.57 E-value=11 Score=16.73 Aligned_cols=13 Identities=31% Similarity=0.421 Sum_probs=4.8
Q ss_pred HhCCChHHHHHHH
Q 045511 143 SKCGFHKEAIDMF 155 (209)
Q Consensus 143 ~~~g~~~~a~~~~ 155 (209)
...|+++.|...|
T Consensus 12 ~~~~~~~~a~~~~ 24 (34)
T smart00028 12 LKLGDYDEALEYY 24 (34)
T ss_pred HHHhhHHHHHHHH
Confidence 3333333333333
No 352
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.62 E-value=27 Score=20.23 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
++...++++.+... ..|-.---.+|.+|...|++++|.++.+++
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555544332 234444445667777777777777776654
No 353
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=63.23 E-value=43 Score=23.88 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=28.7
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 57 MLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 57 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
++..|+.++..-. .++..+...++.-.|.++++.+.+.+..++..|--.-|+.+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444554443322 33333333344445666666666665555555444444555555443
No 354
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=63.07 E-value=21 Score=23.63 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
++..+.+.+..-.|.++++.+.+.|...+..|.-.-|..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 44444444445556666666666555555555444444444443
No 355
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=62.94 E-value=72 Score=24.95 Aligned_cols=77 Identities=6% Similarity=-0.140 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcc----CccHhHHHHHHHHHHhCCChhhHHHHHHhcC-CCcHhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 82 HQKGLEIHAHVIKYGH----LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
.+.+.+.|+.+...+. ..++..-..++....+.|+.++-..+++... .++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4567777777776422 3455666777777788888777666666653 3567777888888888888888778777
Q ss_pred hC
Q 045511 157 GI 158 (209)
Q Consensus 157 ~m 158 (209)
..
T Consensus 226 ~~ 227 (324)
T PF11838_consen 226 LL 227 (324)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 356
>PHA02940 hypothetical protein; Provisional
Probab=62.81 E-value=65 Score=24.66 Aligned_cols=72 Identities=8% Similarity=-0.075 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 112 (209)
+...+...+++-++.++-..+-+++.+. +.| .+..--...+++...+-++.+.+..-.....||+.|..++-
T Consensus 144 tv~~la~~yvq~vk~d~r~~~a~~l~ke-Ls~-------~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~ald 215 (315)
T PHA02940 144 TVILLAGRYVQDVKKDDRRTIANKLSKE-LSW-------TIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRALD 215 (315)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhh-hhH-------HHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 3445566666666666655555555432 111 11122233456667777777777766667778888777653
No 357
>PRK10292 hypothetical protein; Provisional
Probab=62.62 E-value=22 Score=20.80 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=21.6
Q ss_pred CCCCCHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
|.+|.......+|+.....+..+......+.|
T Consensus 29 G~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 29 GQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred CCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 88899988888887666666555444444444
No 358
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=62.12 E-value=35 Score=21.06 Aligned_cols=55 Identities=7% Similarity=-0.183 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHH
Q 045511 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 142 (209)
.+..+++.+.+.|+ .+..-|..+-. .....+.|.++++.++..+..++..+.+++
T Consensus 16 ~v~~ilD~L~~~~V-it~e~~~~I~a---~~T~~~kar~Lld~l~~kG~~A~~~F~~~L 70 (82)
T cd08330 16 NVDPILDKLHGKKV-ITQEQYSEVRA---EKTNQEKMRKLFSFVRSWGASCKDIFYQIL 70 (82)
T ss_pred hHHHHHHHHHHCCC-CCHHHHHHHHc---CCCcHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45566666666662 33333433332 456677777777777777777777777776
No 359
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.17 E-value=18 Score=27.49 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=41.1
Q ss_pred HHHHHHHhCCChHHHHHHHhhC--------CCCCCHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 137 TIISGLSKCGFHKEAIDMFCGI--------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m--------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
-|-.-|.+.|++++|.++|+.+ -..+...+...+..++.+.|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4568889999999999999998 13345567777888888889888877665444
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.04 E-value=71 Score=24.23 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=58.7
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh--ccCccHhHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY--GHLHDIFIQNSLLHF 110 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~ 110 (209)
+.+.-++.+.+.+++++++.+.+.-.+.. +-|.-+-..+++.+|-.|++++|..=++..-+- ...+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34566778888999999999887776654 245566777889999999999988777665433 234556788888876
Q ss_pred HHhC
Q 045511 111 YVTV 114 (209)
Q Consensus 111 ~~~~ 114 (209)
-.-+
T Consensus 82 ea~R 85 (273)
T COG4455 82 EAAR 85 (273)
T ss_pred HHHH
Confidence 5443
No 361
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=59.83 E-value=41 Score=21.07 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=23.7
Q ss_pred hCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHH
Q 045511 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 151 (209)
+..+.+.|.++++.++.++..+|.+..+++-..|..+.|
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 445566666666666666666666666666555544444
No 362
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=59.78 E-value=35 Score=20.68 Aligned_cols=33 Identities=6% Similarity=-0.041 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 114 (209)
+.+-|...+..+.... +.++..||++-+.+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4455666666665443 56677788777776665
No 363
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=59.44 E-value=35 Score=30.08 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=72.7
Q ss_pred HHHHHcCCCccchHHHHH-----Hh-hhCC---CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 38 LKLLTQSSTPQNAIPLYN-----KM-LNCP---SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~-----~m-~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
...+..+|+.+.|..+.- +| .+-+ -..+..+...+-..+-+...+..|-++|..|-+ ...++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 345556777777766521 11 1111 123445566666666666777777788777643 24678
Q ss_pred HHHHhCCChhhHHHHHHhcCC--CcH-----------hHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 109 HFYVTVKDIFSAHQIFNSVVF--PDV-----------VTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~--~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
......+++.+|..+-++.++ +|+ .-|.--=++|-++|+..+|.+++..+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 889999999999999998865 332 12334456778888888888888877
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.41 E-value=1.1e+02 Score=26.09 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=37.9
Q ss_pred HHHHHhcCCCcHhHH-HHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhcccc--chhHHHHHHHHH
Q 045511 121 HQIFNSVVFPDVVTW-TTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLG--SRKLGKAIHAHS 190 (209)
Q Consensus 121 ~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~~ 190 (209)
...+..+..++..++ +.+++-+-+.|-.++|..+|+.+ --.|+...|..+|+--.... ++.-+...++.+
T Consensus 448 i~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a 522 (568)
T KOG2396|consen 448 ISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRA 522 (568)
T ss_pred HHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 333444445554443 55666666777777777777777 22345555666655422111 255555666655
No 365
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=59.09 E-value=41 Score=20.90 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHH
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 152 (209)
-...+.......|+.+.|.++++.+. .....|..+++++-..|..+.|.
T Consensus 34 d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 34 DKERIQAAENNSGNIKAAWTLLDTLV-RRDNWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCCHHHHH
Confidence 33444444455677777777777776 45556667777777777665553
No 366
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.05 E-value=95 Score=25.09 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=64.3
Q ss_pred HHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhC---CCCCCHHHHHHHHH--HHhccccHHHHHHHHHH
Q 045511 18 LNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNC---PSSYNHYTFTQALK--ACSLAHAHQKGLEIHAH 91 (209)
Q Consensus 18 ~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~ 91 (209)
+......+..+-|+ .....++...-+.++.++|.+.++++.+. --.|+.+.|...-. .+...|++.++.+++++
T Consensus 61 Y~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 61 YLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34444444333344 45555666666778899999999998753 23467776655443 44566899999999998
Q ss_pred HHH-----hccCccHhH-HHHHHH-HHHhCCChhh
Q 045511 92 VIK-----YGHLHDIFI-QNSLLH-FYVTVKDIFS 119 (209)
Q Consensus 92 m~~-----~g~~~~~~~-~~~ll~-~~~~~g~~~~ 119 (209)
..+ .|++|++++ |..+=. .|-+.|++..
T Consensus 141 ~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 141 LKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHH
Confidence 887 678776653 443333 3444455443
No 367
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.75 E-value=58 Score=22.49 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=30.7
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 56 KMLNCPSSYNHYTFTQALKACSLA-HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 56 ~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
.+++.|+.++..- ..++..+... +..-.|.++++.+.+.+...+..|-=.-|+.+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445555544332 2233333332 34555666666666666555555544445555555543
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.03 E-value=93 Score=24.68 Aligned_cols=108 Identities=9% Similarity=0.027 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhccCc-------c---------HhHHHHHHHHHHhCCChhhHHHHH
Q 045511 62 SSYNHYTFTQALKACSLA-HAHQKGLEIHAHVIKYGHLH-------D---------IFIQNSLLHFYVTVKDIFSAHQIF 124 (209)
Q Consensus 62 ~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~-------~---------~~~~~~ll~~~~~~g~~~~a~~~~ 124 (209)
.+-|+.-|...+...... ..++++.++....+-.-++- | ..+++...+.|..+|.+.+|.++.
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345666666665554333 23556666655553221111 1 224455567889999999999999
Q ss_pred HhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC--------CCCCCHHhHHH
Q 045511 125 NSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI--------DVKPNANTLVS 169 (209)
Q Consensus 125 ~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--------~~~p~~~t~~~ 169 (209)
.... +.+...|-.++..++..|+--.+..=+.++ |+..|...++.
T Consensus 303 qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieew 358 (361)
T COG3947 303 QRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEW 358 (361)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHH
Confidence 8874 356778889999999999955554444444 88777766654
No 369
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.02 E-value=1e+02 Score=25.18 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHH----HhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH-Hh-c----cCccH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYN----KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI-KY-G----HLHDI 101 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~----~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~-~~-g----~~~~~ 101 (209)
..++.+-.++.+.+++.....++. .|....-..+ ..-..++..|.+.+++..+...++.-. +. + +.|..
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT-~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~ 181 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLT-SIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKY 181 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchh-hhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHH
Confidence 455667777777776666444433 3332221111 233445566666666665555543211 11 1 22221
Q ss_pred hHHHHHHH--HHHhCCChhhHHHHHHhcC-CCcHhHHHHHHHHH--------HhCCCh--------HHHHHHHhhC----
Q 045511 102 FIQNSLLH--FYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGL--------SKCGFH--------KEAIDMFCGI---- 158 (209)
Q Consensus 102 ~~~~~ll~--~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~--------~~~g~~--------~~a~~~~~~m---- 158 (209)
...=..=. .|....+++.|..++.... -|....-+..+.+| .-.|.. ..|.+.|+.|
T Consensus 182 fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY 261 (422)
T KOG2582|consen 182 FLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPY 261 (422)
T ss_pred HHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchH
Confidence 11111111 1345678999999998874 24433333333333 334544 3466777766
Q ss_pred ------CCCCCHHhHHHHHHHh----ccccchhHHHHHHHHHHHhccCCCchhHhHh
Q 045511 159 ------DVKPNANTLVSVLSAC----SSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 159 ------~~~p~~~t~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 205 (209)
-.+-+..+..++++.. .+-++..-+.+....+.++.+..-..||.+|
T Consensus 262 ~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sL 318 (422)
T KOG2582|consen 262 HEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSL 318 (422)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222366666553 4568888899999999888888888888776
No 370
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=57.96 E-value=1.3e+02 Score=28.69 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=60.4
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHF 110 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~ 110 (209)
.|++.-..+.+.+.+++|--+|+..-+ ....+.++-..|+++++..+..++... .+.. +-..|+.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 334444444445555555555444322 234455666666666666665554321 1222 33678888
Q ss_pred HHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 111 YVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
+...++.-+|-++..+--..-. -.+..||+...|++|.++-..
T Consensus 1009 L~e~~kh~eAa~il~e~~sd~~----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSDPE----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHcccchhHHHHHHHHhcCHH----HHHHHHhhHhHHHHHHHHHHh
Confidence 8888888888877776533222 234455556667777666544
No 371
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.22 E-value=57 Score=21.95 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHcC----CCccchHHHHHHhhh-----CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc-H
Q 045511 32 HILNTLLKLLTQS----STPQNAIPLYNKMLN-----CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-I 101 (209)
Q Consensus 32 ~~~~~li~~~~~~----g~~~~a~~l~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~ 101 (209)
..|...|.-.-++ +.......++++..+ ....-|..-....+..--... .+.++|..|..+|+... +
T Consensus 23 ~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A 99 (126)
T PF08311_consen 23 DPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLA 99 (126)
T ss_dssp HHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBH
T ss_pred HHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHH
Confidence 4555555444433 333344444444432 123446665555555543333 78899999999997665 4
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.-|..--..+...|++++|.++|..
T Consensus 100 ~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 100 LFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5788888888999999999999863
No 372
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.98 E-value=40 Score=23.37 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=41.5
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc
Q 045511 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81 (209)
Q Consensus 18 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 81 (209)
+.+..+..+.+++. .=-.++..+.+.++.-.|.++++++.+.+...+..|.-..|+.+...|-
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33344443333333 2234677777787779999999999998877777776666666666654
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.94 E-value=60 Score=27.66 Aligned_cols=118 Identities=8% Similarity=-0.040 Sum_probs=70.5
Q ss_pred hhccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 6 LKSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
+..|....|-+++....+..+..|+....-+.| +...|.++.+.+.+....+. +.....+..+++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 344555555555555555544445554433333 45568888888777665442 345567888888888888888888
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..+-+.|+...++...+ ....-.+--..|.++++.-.+.+.
T Consensus 377 ~s~a~~~l~~eie~~ei-~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEV-LTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHhccccCChhh-eeeecccHHHHhHHHHHHHHHHHH
Confidence 88888887766543222 111112222345667776666665
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.83 E-value=51 Score=29.24 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=65.0
Q ss_pred HHHHHHHhCCChhhHHHHHHhcCC------CcHhHHHHHHHHHHhCCChHH------HHHHHhhCCCCCCHHhHHHHHHH
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVVF------PDVVTWTTIISGLSKCGFHKE------AIDMFCGIDVKPNANTLVSVLSA 173 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~p~~~t~~~li~~ 173 (209)
+|+.+|..+|++..+.++++.... .=...||..|+...+.|.++. +.+.++.-.+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 899999999999999999998832 235689999999999998663 34444443566688999999988
Q ss_pred hccccchhHHHHHHHHHHH
Q 045511 174 CSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~ 192 (209)
...--.-....-++.++..
T Consensus 113 sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcChHhHHhccHHHHHHHH
Confidence 8765555555556665544
No 375
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.83 E-value=93 Score=24.30 Aligned_cols=127 Identities=12% Similarity=0.012 Sum_probs=78.1
Q ss_pred ccchHHHHHHhhhCCC----CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHH
Q 045511 47 PQNAIPLYNKMLNCPS----SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 122 (209)
Q Consensus 47 ~~~a~~l~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 122 (209)
.+.|.+.|+.....+. ..+...-..++....+.|..+.-..+++..... ++..--..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567888888877522 345566677788888888877666666555543 467788999999999999998888
Q ss_pred HHHhcCCC---cHhHHHHHHHHHHhCCCh--HHHHHHHhhC------CCCCCHHhHHHHHHHhcc
Q 045511 123 IFNSVVFP---DVVTWTTIISGLSKCGFH--KEAIDMFCGI------DVKPNANTLVSVLSACSS 176 (209)
Q Consensus 123 ~~~~~~~~---~~~~~~~li~~~~~~g~~--~~a~~~~~~m------~~~p~~~t~~~li~~~~~ 176 (209)
+++..... ...-...++.++...+.. +.+.+.+.+= ...++..+...++..+..
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCT
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhc
Confidence 88876332 122345566666644433 6676666554 223333366777776654
No 376
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.93 E-value=1.6e+02 Score=26.64 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=26.2
Q ss_pred CCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhH
Q 045511 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202 (209)
Q Consensus 162 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 202 (209)
+...+.+.+++.+ +.+|++.|...+..|.+.|..|.-...
T Consensus 257 ~hyd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~R 296 (725)
T PRK13341 257 AHFDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFR 296 (725)
T ss_pred CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4445556666655 567777788877888777777754433
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.59 E-value=61 Score=21.80 Aligned_cols=46 Identities=7% Similarity=-0.042 Sum_probs=37.2
Q ss_pred CccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHH
Q 045511 46 TPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAH 91 (209)
Q Consensus 46 ~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~ 91 (209)
..+++.++|+.|...|+-- -..-|...-..+.+.|+++.|.++|+.
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3448999999999988643 456788999999999999999999864
No 378
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=1e+02 Score=24.32 Aligned_cols=115 Identities=8% Similarity=0.062 Sum_probs=74.0
Q ss_pred HHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCC-cH---h---HHHHHHHHHHhCCC
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DV---V---TWTTIISGLSKCGF 147 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~---~---~~~~li~~~~~~g~ 147 (209)
.....|+...+..+|+...+.. +-+...--.+..+|...|+++.|..+++.++.. .. . ..-.++.-....++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3467788899999998887764 334566677888999999999999999998632 11 1 22233333344444
Q ss_pred hHHHHHHHhhCCCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 148 HKEAIDMFCGIDVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 148 ~~~a~~~~~~m~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.....+-+.. .| |...--.+-..+.-.|+.+.|.+.+-.+.++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444 66 4445555666677788888877655544333
No 379
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=55.24 E-value=50 Score=20.69 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHHHhCCChhhHHHHHHhcCC-CcHhHHHHHHHHHHhCCChHHH
Q 045511 108 LHFYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a 151 (209)
.......|+.+.|.++++.+.+ .....|..++.++-+.|....|
T Consensus 41 ~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 41 LAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCccHH
Confidence 3333344777777777777765 4556677777777777765544
No 380
>PRK14700 recombination factor protein RarA; Provisional
Probab=54.92 E-value=1.1e+02 Score=24.32 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHcC---CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhccCccHhH
Q 045511 32 HILNTLLKLLTQS---STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-----HQKGLEIHAHVIKYGHLHDIFI 103 (209)
Q Consensus 32 ~~~~~li~~~~~~---g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~~ 103 (209)
.+|+ +|+++.|+ +++|.|+-++.+|.+.|-.|....=..++.+.-..|. +..|...++....-|++-....
T Consensus 125 ~HYd-~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~ 203 (300)
T PRK14700 125 EFYE-QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLV 203 (300)
T ss_pred hhHH-HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3444 57777764 7889999999999999987887777777778777763 4456666777777776655555
Q ss_pred HHHHHHHHHhCCC
Q 045511 104 QNSLLHFYVTVKD 116 (209)
Q Consensus 104 ~~~ll~~~~~~g~ 116 (209)
....+-.++....
T Consensus 204 La~aviyLA~aPK 216 (300)
T PRK14700 204 LAQAAIYLAVAPK 216 (300)
T ss_pred HHHHHHHHHcCCC
Confidence 5555555554433
No 381
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=54.79 E-value=29 Score=23.96 Aligned_cols=44 Identities=18% Similarity=0.015 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
-|...++.+ -+.|-..+...++++|.++|+..+..+|+.++.-.
T Consensus 111 GtlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 111 GTLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred ehhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 344444444 45677888889999999999999999999888654
No 382
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.07 E-value=35 Score=22.22 Aligned_cols=47 Identities=15% Similarity=0.040 Sum_probs=27.9
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChh
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 118 (209)
++..+...+..-.|.++++.+.+.+...+..|--..|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444455567777777777666666666555666666666543
No 383
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=53.63 E-value=59 Score=21.04 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHhcCCCc--HhHHHHHHHHHHhCC-C-hHHHHHHHhhC
Q 045511 104 QNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVTWTTIISGLSKCG-F-HKEAIDMFCGI 158 (209)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g-~-~~~a~~~~~~m 158 (209)
...++..|...+++++|.+.+.++..|+ ...-..+|......+ . -+.+..++..+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L 63 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRL 63 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 3456778888888888888888876552 223334444444443 2 22344445554
No 384
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=53.63 E-value=38 Score=24.11 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHH
Q 045511 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83 (209)
Q Consensus 18 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 83 (209)
+.++.+..+..++..- -.++..+....+.-.|.++++.+.+.+..++..|.-..|..+...|-+.
T Consensus 13 ~~~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 13 AEKLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3344444444344422 2445555556677799999999999998888888888888888887654
No 385
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.47 E-value=1.3e+02 Score=24.89 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHh---cc-CccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 83 QKGLEIHAHVIKY---GH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 83 ~~a~~~~~~m~~~---g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+....++...... |+ ..+......++... .|+...+..+++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~ 200 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELA 200 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 4455555544322 33 44444444444432 56666666666543
No 386
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.59 E-value=49 Score=27.80 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhcc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 176 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~ 176 (209)
..|+.=|...|++.+|.+++.++.-| ....+-+++.+.-+.|+-...+.++++. +.-..+|-+.|-++|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c-f~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC-FKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhcCceeHHHhhhhhhh
Confidence 45666777778888888888876443 3557777777777777766666666653 33344555555555554
No 387
>PRK12357 glutaminase; Reviewed
Probab=52.31 E-value=1.2e+02 Score=24.28 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=11.7
Q ss_pred HHHHHHHhhCCCcccHHHHHH
Q 045511 19 NQIHAQIIKIPQPHILNTLLK 39 (209)
Q Consensus 19 ~~~~~~~~~~p~~~~~~~li~ 39 (209)
+.+++..+..|+-..||+++.
T Consensus 90 ~~V~~~VG~EPSG~~FNSi~~ 110 (326)
T PRK12357 90 SYVLERVDVEPTGDAFNSIIR 110 (326)
T ss_pred HHHHHHhCCCCCCCCcchhhh
Confidence 344444455566666666653
No 388
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.29 E-value=82 Score=24.65 Aligned_cols=85 Identities=13% Similarity=0.036 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-----cCccHhHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-----HLHDIFIQNS 106 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~ 106 (209)
..-..-+..+...|++..|.+++.+..+. + -+..-|+.+=.. ..++++.....+.+.+.. ...|+..|..
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l-~~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~ 202 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQL-L-EELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSK 202 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-H-HhcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34445556666677777777776666542 0 000011110000 012222222222222221 2456777777
Q ss_pred HHHHHHhCCChhhHH
Q 045511 107 LLHFYVTVKDIFSAH 121 (209)
Q Consensus 107 ll~~~~~~g~~~~a~ 121 (209)
++.+|.-.|+.+.+.
T Consensus 203 v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 203 VQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHhhhHHHH
Confidence 777777777655544
No 389
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.87 E-value=1.3e+02 Score=25.72 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCCccchHHHHHHhhhCC---C----------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh
Q 045511 44 SSTPQNAIPLYNKMLNCP---S----------SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g---~----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 102 (209)
.|++..|..++++....| + .++....-.++.++.. ++.+.+..+++.+.+.|..|...
T Consensus 211 ~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 211 NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 578888888887665433 1 1333444445555443 78888999999999998777533
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.62 E-value=1.5e+02 Score=30.55 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=61.0
Q ss_pred HHhccccHHHHHHHHHHHHHhcc--CccHhHHHHHHHHHHhCCChhhHHHHHHh-cCCCcHhHHHHHHHHHHhCCChHHH
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNS-VVFPDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a 151 (209)
+--+.+.+..|...++.-..... .....-|-.+...|+..+++|....+... ..+|+.. --|.-....|+|..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~---~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLY---QQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHH---HHHHHHHhhccHHHH
Confidence 33455666666666665311111 11233444455577777777777777663 3333322 344455667788888
Q ss_pred HHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHH
Q 045511 152 IDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 152 ~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~ 184 (209)
...|+.+ +..|+ ..+++.+++.-...|.++...
T Consensus 1469 ~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1469 AACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred HHHHHHhhcCCCccccchhhHHHhhhcccchhHHH
Confidence 8888887 77776 456666666555555555443
No 391
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=51.55 E-value=8.6 Score=22.53 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=19.4
Q ss_pred cCCCccchHHHHHHhhhCC-CCCCHH
Q 045511 43 QSSTPQNAIPLYNKMLNCP-SSYNHY 67 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g-~~p~~~ 67 (209)
..-+++.|...|.+++..| ++|+.+
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3578899999999999876 655543
No 392
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=51.05 E-value=40 Score=20.45 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=8.2
Q ss_pred HHHHHHhCCChhhHHHHHH
Q 045511 107 LLHFYVTVKDIFSAHQIFN 125 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~ 125 (209)
.+...+..|+.+-+..+++
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLE 47 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3334444444444444444
No 393
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=50.96 E-value=1.1e+02 Score=27.83 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=9.8
Q ss_pred HHHHHhCCChHHHHHHHhh
Q 045511 139 ISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~ 157 (209)
+...+..|+.+-+..+++.
T Consensus 626 L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 626 LCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred HHHHHHhCCHHHHHHHHHC
Confidence 4444555565555555444
No 394
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.88 E-value=1.7e+02 Score=25.42 Aligned_cols=147 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred CCccchHHHHHHhhhCC-CCCCHHHHHHHHHH-HhccccHHHHHHHHHHHHH-------hccCccHhHHHHHHHHHHhCC
Q 045511 45 STPQNAIPLYNKMLNCP-SSYNHYTFTQALKA-CSLAHAHQKGLEIHAHVIK-------YGHLHDIFIQNSLLHFYVTVK 115 (209)
Q Consensus 45 g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g 115 (209)
+....+.++++...+.| +.+-...=.....+ .+..++++.|..+|+...+ .| ++.....+-.+|.+..
T Consensus 226 ~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 226 GELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Q ss_pred Chhh-----HHHHHHhc---CCCcHhHHHHHHHHHHh-CCChHHHHHHHhhC--------------------CCCCCHHh
Q 045511 116 DIFS-----AHQIFNSV---VFPDVVTWTTIISGLSK-CGFHKEAIDMFCGI--------------------DVKPNANT 166 (209)
Q Consensus 116 ~~~~-----a~~~~~~~---~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m--------------------~~~p~~~t 166 (209)
.+.. |.+++... ..|+...+-..+.-... ..+...|.+.|..- |++||...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcc
Q 045511 167 LVSVLSACSSLGSRKLGKAIHAHSLRNLN 195 (209)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 195 (209)
-..+.+-.+..| .-.|...+...-..|.
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc
No 395
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.17 E-value=98 Score=24.22 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhcCCC--cHhHHHHHHHHHHhCCChHHHHHHHhh--------CCCCCCHHhHHHH
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEAIDMFCG--------IDVKPNANTLVSV 170 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~p~~~t~~~l 170 (209)
...-..-+..+...|++..|.++..+..+. +..-|+++=. + ..++++-.....+ +-..-|...|..+
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~-L--~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v 203 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRH-L--SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKV 203 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHH-H--hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344556677777888988888888765221 0011111100 0 0111222222211 1224566778888
Q ss_pred HHHhccccchhHHH
Q 045511 171 LSACSSLGSRKLGK 184 (209)
Q Consensus 171 i~~~~~~g~~~~a~ 184 (209)
+.+|.-.|+.+.+.
T Consensus 204 ~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 204 QEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHhhhHHHH
Confidence 88887777665443
No 396
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=50.06 E-value=8.3 Score=21.45 Aligned_cols=24 Identities=4% Similarity=-0.020 Sum_probs=18.0
Q ss_pred cCCCccchHHHHHHhhhCC-CCCCH
Q 045511 43 QSSTPQNAIPLYNKMLNCP-SSYNH 66 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g-~~p~~ 66 (209)
..-+++.|...|..++..| ++|+.
T Consensus 25 n~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 25 NNWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TTT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred cCCCHHHHHHHHHHHHHcCCCChHh
Confidence 4578999999999999887 66654
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.00 E-value=62 Score=19.97 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHHHHhccC-ccH-hHHHHHHHHHHhCCChhhHHH
Q 045511 79 AHAHQKGLEIHAHVIKYGHL-HDI-FIQNSLLHFYVTVKDIFSAHQ 122 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~-~~~-~~~~~ll~~~~~~g~~~~a~~ 122 (209)
....+.|...+...++.-.. ++. .++..|+.+|+.-|.+.++.+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555444433211 121 244555555555555544433
No 398
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=48.90 E-value=34 Score=21.95 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=36.7
Q ss_pred HcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh
Q 045511 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF 102 (209)
Q Consensus 42 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 102 (209)
.+..++..+.++|..+.+.|.. +...+.-+....-..++.+.- ..+..=++..+.|+++
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~~ 93 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDLV 93 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCchh
Confidence 4557888899999999999863 333444566666666666544 4444444445666543
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.54 E-value=97 Score=23.53 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcC---------CCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVV---------FPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
..-.+-.-|.+.|++++|.++|+.+. .....+...+..++.+.|+.+....+--+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44456678889999999999999872 12344556677888888888877665433
No 400
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.93 E-value=85 Score=21.22 Aligned_cols=91 Identities=8% Similarity=0.089 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHcC----CCccchHHHHHHhhh-----CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH-
Q 045511 32 HILNTLLKLLTQS----STPQNAIPLYNKMLN-----CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI- 101 (209)
Q Consensus 32 ~~~~~li~~~~~~----g~~~~a~~l~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~- 101 (209)
..|...|.-.-.+ |.-..-..++++..+ ...+-|..-....|...-..++ ..++|..|.+.|+....
T Consensus 23 ~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~A 99 (125)
T smart00777 23 DLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLA 99 (125)
T ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhH
Confidence 5555555544432 222233444444332 2244566655666665544434 57789999998876664
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHH
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFN 125 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~ 125 (209)
.-|...-..+-..|++.+|.++|.
T Consensus 100 lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 100 LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456777778888899999988875
No 401
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.87 E-value=1.9e+02 Score=25.16 Aligned_cols=160 Identities=9% Similarity=0.037 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHH----------HHHHH-HHHHHhccCcc
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK----------GLEIH-AHVIKYGHLHD 100 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----------a~~~~-~~m~~~g~~~~ 100 (209)
..+..++.+.. .|++..+++....+.. |..+-..+...+...|-++. ..+.+ -... ..+--+
T Consensus 299 ~~~e~~~~~i~-~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA-~~L~s~ 371 (566)
T PF07575_consen 299 NPLEQILLAIF-EGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYA-SSLMSH 371 (566)
T ss_dssp STTHHHHHHHH-TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHH-HHHHT-
T ss_pred CHHHHHHHHHH-ccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHH-HHHhcC
Confidence 44455554333 6788888777766522 32333444444434443330 01111 0110 011123
Q ss_pred HhHHHHHHHHHHhCCC--hhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCHHhHHHHHHHhccc
Q 045511 101 IFIQNSLLHFYVTVKD--IFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVK-PNANTLVSVLSACSSL 177 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-p~~~t~~~li~~~~~~ 177 (209)
...|..-+..+..+++ -.....++...+-.+...-.-++..|.+.|-.+.+.++.+.+|.+ -...-|..-+.-+.++
T Consensus 372 ~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra 451 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRA 451 (566)
T ss_dssp TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
Confidence 3445555555544443 333444455555566666778888899999999999999888222 2334577778888899
Q ss_pred cchhHHHHHHHHHHHhccCCC
Q 045511 178 GSRKLGKAIHAHSLRNLNENN 198 (209)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~p~ 198 (209)
||...+..+-..+.+..+..+
T Consensus 452 ~d~~~v~~i~~~ll~~~~~~~ 472 (566)
T PF07575_consen 452 GDYSLVTRIADRLLEEYCNNG 472 (566)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 999888888777765544333
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.66 E-value=39 Score=18.91 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=14.7
Q ss_pred HHHHhCCChHHHHHHHhhC-CCCCCHHhH
Q 045511 140 SGLSKCGFHKEAIDMFCGI-DVKPNANTL 167 (209)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m-~~~p~~~t~ 167 (209)
-|+.+.|+++.|.+..+.+ .+.|+-.-.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3555666666666666655 555554433
No 403
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.44 E-value=45 Score=21.54 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhh
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLN 59 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~ 59 (209)
..++..|...|+.++|..-++++..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 3456667777888888888877643
No 404
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.68 E-value=1.5e+02 Score=23.80 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHHhccc
Q 045511 62 SSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 62 ~~p~~~t~~~ll~~~~~~~ 80 (209)
++||-.|-...-+.+...|
T Consensus 219 fPpnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred cCCcchhHHHHHHHHhHhh
Confidence 4677777666666655554
No 405
>PHA03100 ankyrin repeat protein; Provisional
Probab=46.62 E-value=1.2e+02 Score=25.18 Aligned_cols=149 Identities=14% Similarity=0.062 Sum_probs=78.7
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhCCCCCCHHH--HHHHHHH-----HhccccHHHHHHHHHHHHHhccCccHhH--HHH
Q 045511 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT--FTQALKA-----CSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNS 106 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ 106 (209)
+.+...++.|+.+ +++.+.+.|..|+... ....+.. .+..|.. ++.+.+.+.|..++... -.+
T Consensus 37 t~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCc
Confidence 3444455666654 4555556676665432 2233333 4444444 45566667776554332 134
Q ss_pred HHHHHH--hCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCC--ChHHHHHHHhhCCCCCCHH---hHHHHHHHhcc
Q 045511 107 LLHFYV--TVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCG--FHKEAIDMFCGIDVKPNAN---TLVSVLSACSS 176 (209)
Q Consensus 107 ll~~~~--~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~ 176 (209)
.+...+ +.|+.+-+..+++.-..+ +..-+ +.+...+..| +.+-+..+++. |..++.. -.+. +..++.
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tp-L~~A~~ 185 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTP-LHIAVE 185 (480)
T ss_pred hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCH-HHHHHH
Confidence 455555 888888888887754333 22223 3455556667 66655555544 5554432 2233 444455
Q ss_pred ccchhHHHHHHHHHHHhccCCCc
Q 045511 177 LGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
.|+.+ +.+.+.+.|..|+.
T Consensus 186 ~~~~~----iv~~Ll~~ga~~~~ 204 (480)
T PHA03100 186 KGNID----VIKFLLDNGADINA 204 (480)
T ss_pred hCCHH----HHHHHHHcCCCccC
Confidence 66555 44455566766653
No 406
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=46.57 E-value=57 Score=22.66 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=32.7
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS 77 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~ 77 (209)
+|..+.+.+....+.++++.+.+.|+..+..|.+..+.-+.
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 56667788888888999999988898888888877666553
No 407
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=46.46 E-value=1.1e+02 Score=25.01 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=31.0
Q ss_pred HhccccHHHHHHHHHHHHHhccCc-cHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
|-++|.+++|.+.|..-.. ..| |++++..--.+|.+...+..|+.-...
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 4556777777777654433 234 677777777777777777766655544
No 408
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.34 E-value=40 Score=22.23 Aligned_cols=47 Identities=17% Similarity=0.057 Sum_probs=27.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
.++......+..-.|.++++.+.+.+...+..|-=.-|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34555555555566777777777777666666554555666665543
No 409
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.65 E-value=89 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=21.6
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhHHH
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN 105 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 105 (209)
++....++.-.++|.++++.|.+.| ..+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3455566677788888888888887 33433333
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.34 E-value=1.8e+02 Score=24.19 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=30.4
Q ss_pred cHhHHHHHHHHHHhCCChhhHHHHHHhcCCC----------------cHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP----------------DVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+...--.++.++....++.+..+....-..| .-++.-.|++.++-.|++..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Confidence 3333344455555555555555544442111 1234445556666666666666666665
No 411
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=45.13 E-value=32 Score=23.81 Aligned_cols=56 Identities=20% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhh
Q 045511 150 EAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207 (209)
Q Consensus 150 ~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 207 (209)
.|.++-.++|++..- |.. ++..|.+.|-..+.+.+++.|.++|+.....+|+.+++
T Consensus 97 ~aR~~A~~lgL~V~G-tlG-vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 97 DARNVAKSLGLKVTG-TLG-VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHHHHHHHcCCeeee-hhH-HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 455666666554322 333 34455567888888899999999998888888877664
No 412
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.38 E-value=80 Score=19.87 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=24.5
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
++|+.-...|+..|+.+|-.++..+.-+=-++...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55665666666666666666666555555555555555555
No 413
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.24 E-value=64 Score=18.71 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=21.8
Q ss_pred ccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH-----HhCCChhhHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY-----VTVKDIFSAHQI 123 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~-----~~~g~~~~a~~~ 123 (209)
..|++=++.++++.+-.....+....+-.||... .+.|+...|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3455666666666655433233444444444432 234555555544
No 414
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=44.03 E-value=84 Score=25.57 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=50.9
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChh
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 118 (209)
-|.+.|.+++|.+-|.+-.. +.| |.++|..-..+|.+..++..|+.--....... ..-+..|+.-..+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 46778999999998876554 446 88888888889999888876665433332211 011223333333333345555
Q ss_pred hHHHHHHhc
Q 045511 119 SAHQIFNSV 127 (209)
Q Consensus 119 ~a~~~~~~~ 127 (209)
+|.+-.+..
T Consensus 183 EAKkD~E~v 191 (536)
T KOG4648|consen 183 EAKKDCETV 191 (536)
T ss_pred HHHHhHHHH
Confidence 555544443
No 415
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=43.88 E-value=59 Score=20.77 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=31.5
Q ss_pred hHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 148 HKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 148 ~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.+...+++..- .......|+..|++++.+.|.-..|..+-+.+.++|
T Consensus 47 ~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 44444444444 233345778888888888888888888877777666
No 416
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=43.86 E-value=60 Score=20.06 Aligned_cols=32 Identities=16% Similarity=-0.042 Sum_probs=22.5
Q ss_pred ChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCC
Q 045511 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCGF 147 (209)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 147 (209)
..+.|+.+.+.+......+++++++++...+.
T Consensus 46 ~~dkar~Lid~v~~KG~~A~~iF~~~L~~~d~ 77 (83)
T cd08325 46 IMDKARVLVDSVTEKGQEAGQIFIKHLLNRDK 77 (83)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCh
Confidence 56777777777777777777777777766543
No 417
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=43.70 E-value=51 Score=27.47 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=82.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHh----ccC-ccHhHHHHHHHHHHhCCChhhHHHHHHhc-------CCCc--Hh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKY----GHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSV-------VFPD--VV 133 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~--~~ 133 (209)
.|..+=+.|--.|+++.+.+.++.-++- |-. .....+..|-++++-.|+++.|.+.+..- ..+. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444444445557889888887654432 311 22457889999999999999999888654 2222 23
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC--------CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI--------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m--------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
+.-+|-..|.-..++++|+..+.+= ...-....|-++-+++...|..++|..+...-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444556666666777777776553 2223456888899999999999999887764433
No 418
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=43.43 E-value=1.4e+02 Score=26.78 Aligned_cols=19 Identities=5% Similarity=-0.176 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHHHHHhccC
Q 045511 80 HAHQKGLEIHAHVIKYGHL 98 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~ 98 (209)
++...+..+++.+.+.|+.
T Consensus 259 ~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 4455555555555555543
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.49 E-value=85 Score=19.65 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=7.1
Q ss_pred cccchhHHHHHHHHH
Q 045511 176 SLGSRKLGKAIHAHS 190 (209)
Q Consensus 176 ~~g~~~~a~~~~~~~ 190 (209)
..|++++|.+.+++.
T Consensus 53 ~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 53 RFGHYEEALQALEEA 67 (94)
T ss_pred HhCCHHHHHHHHHHH
Confidence 345555555544443
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.41 E-value=1.2e+02 Score=28.08 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=27.2
Q ss_pred hCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 144 KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
..|++++-..++..-|..|=. | ......|.-++|+++.++..+.
T Consensus 739 Yl~dv~ervkIl~n~g~~~la--y----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 739 YLGDVKERVKILENGGQLPLA--Y----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HhccHHHHHHHHHhcCcccHH--H----HHHhhcCcHHHHHHHHHhhccc
Confidence 467777777777665444322 1 1123567778888888887664
No 421
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.32 E-value=56 Score=20.31 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=16.3
Q ss_pred HHHhccccchhHHHHHHHHHHHhc
Q 045511 171 LSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
+..+.++.--++|.++++.+.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444445556777888888777776
No 422
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=41.88 E-value=81 Score=26.74 Aligned_cols=140 Identities=13% Similarity=0.058 Sum_probs=87.8
Q ss_pred cCCCccchHHHHHHhhhC----C-CCCCHHHHH--HHHHHHhccccHHHHHHHHHHHHHhc--cCccHhHHHHHHHHHHh
Q 045511 43 QSSTPQNAIPLYNKMLNC----P-SSYNHYTFT--QALKACSLAHAHQKGLEIHAHVIKYG--HLHDIFIQNSLLHFYVT 113 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~----g-~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~ 113 (209)
++|..+-+.-+++..... | +..|..++. --+-+.+..|.++- .+.+.+.| +..++.|-++-+.+-|-
T Consensus 51 RnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~v----Vk~L~~~ga~VN~tT~TNStPLraACf 126 (615)
T KOG0508|consen 51 RNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEV----VKLLLRRGASVNDTTRTNSTPLRAACF 126 (615)
T ss_pred hcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHH----HHHHHHhcCccccccccCCccHHHHHh
Confidence 778877777777755321 1 111111110 01444455666654 44445555 44445566678899999
Q ss_pred CCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhH--HHHHHHhccccchhHHHHHHH
Q 045511 114 VKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL--VSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 114 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~--~~li~~~~~~g~~~~a~~~~~ 188 (209)
.|+++-..-+.+.=-.| |..--++|+-++ ..|+.+-+..+++. |..+|..++ |+.+.-|+..|.++-...++.
T Consensus 127 DG~leivKyLvE~gad~~IanrhGhTcLmIa~-ykGh~~I~qyLle~-gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 127 DGHLEIVKYLVEHGADPEIANRHGHTCLMIAC-YKGHVDIAQYLLEQ-GADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred cchhHHHHHHHHcCCCCcccccCCCeeEEeee-ccCchHHHHHHHHh-CCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 99999999888665333 333344554443 47888888777766 888888776 788999999999986555443
No 423
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.27 E-value=1e+02 Score=21.27 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHcC-CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHH
Q 045511 36 TLLKLLTQS-STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83 (209)
Q Consensus 36 ~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 83 (209)
.++..+... +..-.|.++++.+.+.+...+..|.-..|..+...|-+.
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344445544 467789999999999987778888777788887777553
No 424
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.15 E-value=1.1e+02 Score=23.57 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=18.3
Q ss_pred CCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCC
Q 045511 162 PNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198 (209)
Q Consensus 162 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 198 (209)
|.......++.+|. .+++++|.+++..+-+.|+.|.
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 44444455555543 3445555555555555555553
No 425
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.83 E-value=2.1e+02 Score=23.79 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=22.3
Q ss_pred HHHHHHHHhccCccHh--HHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 87 EIHAHVIKYGHLHDIF--IQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
++.+.+.+.|..++.. .-.+.+...+..|+.+-+.-+++.-
T Consensus 157 ~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 157 KILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3445555666554432 2234556666667666666666544
No 426
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.79 E-value=89 Score=19.40 Aligned_cols=63 Identities=8% Similarity=0.029 Sum_probs=42.7
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhH
Q 045511 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120 (209)
Q Consensus 50 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 120 (209)
+..++..+.++|+ .+..-...+ -+...+.+.+.++++.+..+| ...|...++++-..|...-|
T Consensus 18 ~~~v~~~L~~~~V-lt~~~~e~I---~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV-FTPDMIEEI---QAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHH---HcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 4457777777775 232222222 234456788999999998887 78888888888887766554
No 427
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=40.25 E-value=2.2e+02 Score=23.84 Aligned_cols=161 Identities=8% Similarity=-0.036 Sum_probs=94.8
Q ss_pred CCcccHHHHHHHHH-cCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHh--ccccHHHHHHHHHHHHHhccCccHhH--
Q 045511 29 PQPHILNTLLKLLT-QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACS--LAHAHQKGLEIHAHVIKYGHLHDIFI-- 103 (209)
Q Consensus 29 p~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~-- 103 (209)
|....|-.+-.-|. -.|+.++|.+.=....+.+ ....+...+.+.+ ..++.+.+..-|++-++-+ |+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 33355554444333 3588888888766665543 1133444444433 2356666766676666544 33221
Q ss_pred -----------HHHHHHHHHhCCChhhHHHHHHhcC-------CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH
Q 045511 104 -----------QNSLLHFYVTVKDIFSAHQIFNSVV-------FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 104 -----------~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
+..=-+-..++|++..|.+.+.+-. +++...|-..-....+.|+..+|+.-..+. .+.|.-
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 1111223467899999999998762 345566777777788899999998888775 444322
Q ss_pred -HhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 165 -NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 165 -~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
..|-.--+++.-.++++.|.+-++...+..
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122222333445677888887777665553
No 428
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=40.23 E-value=18 Score=29.89 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=20.1
Q ss_pred HHhCCChHHHHHHHhhC---C---CCCCHHhHHHHHHHhccccchhHHHHHH
Q 045511 142 LSKCGFHKEAIDMFCGI---D---VKPNANTLVSVLSACSSLGSRKLGKAIH 187 (209)
Q Consensus 142 ~~~~g~~~~a~~~~~~m---~---~~p~~~t~~~li~~~~~~g~~~~a~~~~ 187 (209)
+|+.|+......+|+.. | ++.=...|+.+-++|...+|+++|.+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 34445555545555444 1 1111233444444444555555555444
No 429
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=40.05 E-value=2e+02 Score=23.79 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=31.0
Q ss_pred HHHHhccCccHhHHHHHHHHHHhCCChhhHHHHH--------------------HhcCCCcHhHHHHHHHHHHhCCChH
Q 045511 91 HVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF--------------------NSVVFPDVVTWTTIISGLSKCGFHK 149 (209)
Q Consensus 91 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~--------------------~~~~~~~~~~~~~li~~~~~~g~~~ 149 (209)
.+.+.|.-.|...+...++.+...-.++||.+-- +....||+..|+++.-.++--+-+.
T Consensus 176 r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 176 RLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 3334454455555555555555555555555332 2223467777777766665554433
No 430
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.61 E-value=1.1e+02 Score=22.62 Aligned_cols=98 Identities=7% Similarity=-0.105 Sum_probs=55.3
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCC--CCCCHHHHHHHHH-HHhccccHH--HHHHHHHHHHHhccCccHh--
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP--SSYNHYTFTQALK-ACSLAHAHQ--KGLEIHAHVIKYGHLHDIF-- 102 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~t~~~ll~-~~~~~~~~~--~a~~~~~~m~~~g~~~~~~-- 102 (209)
+..-++.-.-.....|++++|..-++++.+.= ++--...|..+.. +++..+..+ +|.-++..+...+ .|+..
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL 106 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR-LPSPEEL 106 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCCHHHc
Confidence 34455555566667777888887777775421 2222334444554 566666544 5555565555443 33322
Q ss_pred --HHHHHHHH--------------HHhCCChhhHHHHHHhcC
Q 045511 103 --IQNSLLHF--------------YVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 103 --~~~~ll~~--------------~~~~g~~~~a~~~~~~~~ 128 (209)
..-..|.| ..+.|+++.|++.++-|.
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11222222 245699999999998884
No 431
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.51 E-value=2.4e+02 Score=25.51 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=47.3
Q ss_pred cCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-----HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
+.++++.|+..+.+|.+.|..|....=..++.+.-..|. ...+...++....-|++-......-..-.++....
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apK 348 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPK 348 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCC
Confidence 457888999999999988877765555555555544553 33455556666777766555555555555554433
No 432
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.30 E-value=2.2e+02 Score=24.33 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=39.2
Q ss_pred cCCCccchHHHHHHhhhCC---C----------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH
Q 045511 43 QSSTPQNAIPLYNKMLNCP---S----------SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI 103 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g---~----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 103 (209)
..|++.+|+.++++....+ + .++...+..++++....+....+..+++.+.+.|..|...+
T Consensus 212 S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 212 GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 3477777887777643211 1 12444455666666555556788999999999987776554
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.22 E-value=98 Score=24.58 Aligned_cols=94 Identities=10% Similarity=0.128 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhh----CCCCCCHHHHHHHH-HHHhccccHHHHHHHHHHHHHhccCccH----
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLN----CPSSYNHYTFTQAL-KACSLAHAHQKGLEIHAHVIKYGHLHDI---- 101 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~m~~~g~~~~~---- 101 (209)
..++-.+-..|++-++.+.+.++.++..+ .|.+.|+..-.+-+ -.|+...-+++..+..+.|.++|-..+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 37788889999999999999988766644 57777765333322 2334444567778888888888854432
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.+|-.+..+.. .++.+|-.++.+
T Consensus 195 K~Y~Gi~~m~~--RnFkeAa~Ll~d 217 (412)
T COG5187 195 KVYKGIFKMMR--RNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHH
Confidence 24544433322 345555555543
No 434
>COG0819 TenA Putative transcription activator [Transcription]
Probab=38.08 E-value=1.7e+02 Score=21.93 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHHHcCCCccchHHH-----------HHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPL-----------YNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l-----------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 88 (209)
|...+|+..|...+..|++.+.... -.++.+.+..+....|..++..|+...-.+.+..+
T Consensus 107 ~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~ 177 (218)
T COG0819 107 PANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEEL 177 (218)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHH
Confidence 4447777777777777765543322 12222222223445566666666554433333333
No 435
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.05 E-value=3.5e+02 Score=28.14 Aligned_cols=145 Identities=11% Similarity=0.051 Sum_probs=87.7
Q ss_pred HHHHHHHcCCCccchHHHHHHh----hhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 36 TLLKLLTQSSTPQNAIPLYNKM----LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
.+-.+-.+++.+.+|...++.- ++.. ....-|-.+...|+..++++++..+...-. .+...+ .-|--.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHH
Confidence 3444666778888888888873 2221 233445555558888888888777765311 122222 334456
Q ss_pred HhCCChhhHHHHHHhcCC--Cc-HhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHH-HHHhccccchhHHHH
Q 045511 112 VTVKDIFSAHQIFNSVVF--PD-VVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSV-LSACSSLGSRKLGKA 185 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~l-i~~~~~~g~~~~a~~ 185 (209)
...|++++|...|+.+.+ |+ ...++-+++.--..|.++.+....+.. ...+....++++ +.+.=+.++++..+.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 678899999999998843 43 567887777777778877776655555 333333333322 333345666666555
Q ss_pred HHH
Q 045511 186 IHA 188 (209)
Q Consensus 186 ~~~ 188 (209)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 543
No 436
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.82 E-value=2.8e+02 Score=24.32 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhcchhccCCCcchHhHHHHHHHHhhCCCc---ccHHHH-HHHHHcCCCccchHHHHHHhhhCC---CCCCHHHHHHHHH
Q 045511 2 FVNGLKSLKPTLSFKQLNQIHAQIIKIPQP---HILNTL-LKLLTQSSTPQNAIPLYNKMLNCP---SSYNHYTFTQALK 74 (209)
Q Consensus 2 li~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l-i~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~t~~~ll~ 74 (209)
+++.+...++..|.+.+.+..+.....+.. ..|..+ +..+...++...|.+.++.....- ..|-...+..++.
T Consensus 106 l~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 106 LARIYFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q ss_pred HH--hccccHHHHHHHHHHHHHhccCc---------cHhHHHHHHH--HHHhCCChhhHHHHHHhc
Q 045511 75 AC--SLAHAHQKGLEIHAHVIKYGHLH---------DIFIQNSLLH--FYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 75 ~~--~~~~~~~~a~~~~~~m~~~g~~~---------~~~~~~~ll~--~~~~~g~~~~a~~~~~~~ 127 (209)
+. .+.+..+.+.+..+.+......+ -..+|..+++ ++...|+++.+...++++
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
No 437
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.65 E-value=1.2e+02 Score=21.26 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=28.1
Q ss_pred CccHhHHHHHHHHHHhCCChhhHHHHHHhcC
Q 045511 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 128 (209)
.|+...|...+.+|.-.++-+.|+-++.+++
T Consensus 36 ~~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP 66 (197)
T KOG4414|consen 36 THDDWPYAIHLAGYFLHDDCDNARFLWKRIP 66 (197)
T ss_pred CCCcchHHHHHHHHHHhccchhHHHHHHhCC
Confidence 4677899999999999999999999999985
No 438
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.52 E-value=1.5e+02 Score=21.95 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=31.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhccCc--------------cHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 71 QALKACSLAHAHQKGLEIHAHVIKYGHLH--------------DIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.++..|.+.-++..+..+++.|.+-.+.- --.+-|.....+.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34555556666666777766666543321 123445555566666666666666654
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.38 E-value=2e+02 Score=23.89 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCC-----------CcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVF-----------PDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+.-.|++..+-.||+..|.++++.+.- -.+.+|=-+==+|...+++.+|.++|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999888887721 11222222333445566777777777666
No 440
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.23 E-value=2.4e+02 Score=25.02 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=16.9
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCcc
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 100 (209)
.-.++.++.. |+...+.++++++.+.|..+.
T Consensus 254 i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 254 VFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 3334444333 566666666666666665443
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.16 E-value=66 Score=23.77 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCC--------------CCCHHHHHHHHHHHhccccHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPS--------------SYNHYTFTQALKACSLAHAHQKGLEIHA 90 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~--------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 90 (209)
.+--++|..|.+..++....++++.|.+..+ .+-=...|.....|.+.|.++.|..++.
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3445677788888899999999998876433 2344567888899999999999999886
No 442
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=37.14 E-value=1e+02 Score=25.06 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChh
Q 045511 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 64 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 118 (209)
.|....-.|...|+...+-=.-.++|.+..++|+-.|..+-..+|..|-+.|.+|
T Consensus 294 lnQd~LLLLT~l~Vg~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lE 348 (363)
T TIGR03236 294 MNQDYLLLLTNLAVGEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLE 348 (363)
T ss_pred ccHHHHHHHHHHHhCCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCccc
Confidence 3444444444444444444456788999999999999999999999999888765
No 443
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.98 E-value=51 Score=26.41 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCChHHHHHHHhhC----CCCCCHHhHHHH
Q 045511 136 TTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSV 170 (209)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m----~~~p~~~t~~~l 170 (209)
=.+++.|.++|.+++|.++..-. ..-|+...+..+
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 36788999999999999888776 555775555544
No 444
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.83 E-value=25 Score=17.48 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHhccCCCchhH
Q 045511 180 RKLGKAIHAHSLRNLNENNIILD 202 (209)
Q Consensus 180 ~~~a~~~~~~~~~~~~~p~~~~~ 202 (209)
++.|..+|++.... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 44555555554443 2444443
No 445
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.69 E-value=1.1e+02 Score=23.50 Aligned_cols=53 Identities=9% Similarity=0.198 Sum_probs=37.0
Q ss_pred HHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCHHhHHHHHHHhc
Q 045511 121 HQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 175 (209)
Q Consensus 121 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~~t~~~li~~~~ 175 (209)
+.+|.-..+|.......++..+ ..+++++|.++++++ |..|... .+.+.+++-
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 4444444568888777888765 467899999999999 8777543 445566654
No 446
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.58 E-value=91 Score=18.32 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKAC 76 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~ 76 (209)
|....++.++..+++-.-.+++...+.+..++|. .+..+|-.-+..+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 4445566666666666666666666666666554 2334443333333
No 447
>PRK12356 glutaminase; Reviewed
Probab=36.57 E-value=2.2e+02 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHHhhCCCcccHHHHHHH
Q 045511 19 NQIHAQIIKIPQPHILNTLLKL 40 (209)
Q Consensus 19 ~~~~~~~~~~p~~~~~~~li~~ 40 (209)
+.+++..+..|+-..||+++..
T Consensus 86 ~~V~~~VG~EPSG~~FNsi~~L 107 (319)
T PRK12356 86 QAVREKIGADPTGLPFNSVIAI 107 (319)
T ss_pred HHHHHHhCCCCCCCCcchHHHh
Confidence 4455555666777777777653
No 448
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=36.48 E-value=83 Score=20.13 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=28.7
Q ss_pred hHHHHHHHhhC------CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 148 HKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 148 ~~~a~~~~~~m------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
.++|+++...| ...-|..|-..+++.+-..|-+..+..+..+-.+.|..|
T Consensus 25 IdKALDFIggMntSas~P~sMdESTAKGi~KyL~elGvPasa~dv~aRg~qeGWn~ 80 (119)
T PF08986_consen 25 IDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAADVTARGEQEGWNP 80 (119)
T ss_dssp HHHHHHHHHTS-TT-SS--HCCCHHHHHHHHHHHHCT----HHHHHHHHHHCT--H
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 45677777777 222355677777777777777777777776666666544
No 449
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=36.30 E-value=70 Score=21.47 Aligned_cols=48 Identities=8% Similarity=-0.164 Sum_probs=24.0
Q ss_pred ccchHHHHHHh-hhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 47 PQNAIPLYNKM-LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 47 ~~~a~~l~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
++-+++++++. ...|+. +..+-..++....+.|-++....+++.+..+
T Consensus 40 ~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~Wl~m~~~R 88 (124)
T PF08780_consen 40 FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEIWLDMLEDR 88 (124)
T ss_dssp HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 34555555553 334553 3333355555556666655555555444443
No 450
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=36.12 E-value=2.6e+02 Score=24.14 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHH--------------HhccccHHHHHHHHHHHHHhccCccHhH
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA--------------CSLAHAHQKGLEIHAHVIKYGHLHDIFI 103 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--------------~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 103 (209)
-...|...++..++++....|- +..|+..+-.. ....++...+...++++.+.|..|....
T Consensus 208 ~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 208 RAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 3456888999999999988652 33333333222 2345788899999999999998776553
No 451
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.00 E-value=2.9e+02 Score=23.92 Aligned_cols=152 Identities=12% Similarity=0.077 Sum_probs=87.7
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
|....|+.|+..+... +.+.-.++++++.. . + ...+..++.+....|-.....-+.+++....+.+ ...-..+.
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHH
Confidence 4457888888866655 55788888888765 1 2 6789999999999999887777777666655433 33333333
Q ss_pred HH--HHhCCChhhHHHHHHhcC----CCc-------HhHHHHHHHHHHhCCCh------HHHHHHHhhC---CC-CCCHH
Q 045511 109 HF--YVTVKDIFSAHQIFNSVV----FPD-------VVTWTTIISGLSKCGFH------KEAIDMFCGI---DV-KPNAN 165 (209)
Q Consensus 109 ~~--~~~~g~~~~a~~~~~~~~----~~~-------~~~~~~li~~~~~~g~~------~~a~~~~~~m---~~-~p~~~ 165 (209)
.. ..+....+-...+++-+. .+. ..+|.+++..+|..... ++....+.+. .. +-|..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 32 233445444444544332 122 45788888877776642 3333333332 10 11222
Q ss_pred hHHHHHHHhccccchhHHHHH
Q 045511 166 TLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 166 t~~~li~~~~~~g~~~~a~~~ 186 (209)
--...|++....|...-...+
T Consensus 462 ~~~~~LkaLGN~g~~~~i~~l 482 (574)
T smart00638 462 EIQLYLKALGNAGHPSSIKVL 482 (574)
T ss_pred heeeHHHhhhccCChhHHHHH
Confidence 234456666666665544333
No 452
>PRK14135 recX recombination regulator RecX; Provisional
Probab=35.93 E-value=2e+02 Score=22.00 Aligned_cols=147 Identities=12% Similarity=0.058 Sum_probs=70.3
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc---
Q 045511 51 IPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--- 127 (209)
Q Consensus 51 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--- 127 (209)
..+++.+...|..-|..--...+....+.+. ..-.++-..+.+.|++++. ....+.-+...+..+.|..+....
T Consensus 92 e~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~~~~--Ie~~l~~l~~~~~~d~a~~~~~k~~~~ 168 (263)
T PRK14135 92 SEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIEDEI--IEEALSEYTEEDQIEVAQKLAEKLLKK 168 (263)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCCHHH--HHHHHHhCChhhHHHHHHHHHHHHHHH
Confidence 3444444555543332222233333333221 2344566677777765543 334444443444455555444332
Q ss_pred -C-CCcHhHHHHHHHHHHhCC-ChHHHHHHHhhCCCCCCHHh-HHHHH-------HHhccccchhHHHHHHHHHHHhccC
Q 045511 128 -V-FPDVVTWTTIISGLSKCG-FHKEAIDMFCGIDVKPNANT-LVSVL-------SACSSLGSRKLGKAIHAHSLRNLNE 196 (209)
Q Consensus 128 -~-~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~p~~~t-~~~li-------~~~~~~g~~~~a~~~~~~~~~~~~~ 196 (209)
. .+......-+...+.+.| ..+.+.+++.++....|... +..+. +-+......+.-..+...+..+|+.
T Consensus 169 ~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~~~~~~k~k~K~~~~L~rrGF~ 248 (263)
T PRK14135 169 YQKLPFKALKQKIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYSKYDGYELKQKLKQALYRKGFS 248 (263)
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC
Confidence 1 122233455667777777 45566777777633333322 22211 1121111234445677788888988
Q ss_pred CCch
Q 045511 197 NNII 200 (209)
Q Consensus 197 p~~~ 200 (209)
++..
T Consensus 249 ~~~I 252 (263)
T PRK14135 249 YDDI 252 (263)
T ss_pred HHHH
Confidence 7753
No 453
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.54 E-value=99 Score=18.43 Aligned_cols=31 Identities=6% Similarity=0.121 Sum_probs=14.3
Q ss_pred ChhhHHHHHHhcCCCcHhHHHHHHHHHHhCC
Q 045511 116 DIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146 (209)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 146 (209)
..+.+.++++.+..++..+|..++.++-..+
T Consensus 42 ~~~k~~~Lld~l~~kg~~af~~F~~~L~~~~ 72 (80)
T cd01671 42 RQDKARKLLDILPRKGPKAFQSFLQALQETD 72 (80)
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 3444444444444444444444444444333
No 454
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=35.46 E-value=3.6e+02 Score=24.83 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=28.2
Q ss_pred CCCccchHHHHHHhhhCC---C----------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCc
Q 045511 44 SSTPQNAIPLYNKMLNCP---S----------SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g---~----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 99 (209)
.|++.+++.++++....+ + .+|...+..++.++. .++...+..+++++...|+.+
T Consensus 211 ~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 211 QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 466666666655543221 1 123333444444433 356666666666666666544
No 455
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.38 E-value=2.8e+02 Score=23.56 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+.+++-.++++.+.+.| .+| ....-|++|-|.+++++|.+-+++-
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s 112 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKES 112 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhh
Confidence 46777778888888776 233 4556688999999999999988765
No 456
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=34.84 E-value=98 Score=25.95 Aligned_cols=92 Identities=13% Similarity=0.229 Sum_probs=54.9
Q ss_pred CCCccchHHHHHHhhhCCC-----CCCHHH---HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC
Q 045511 44 SSTPQNAIPLYNKMLNCPS-----SYNHYT---FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~-----~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 115 (209)
+=+...|.--|..+....+ ..|... |=.-...+...+. .++|..+.+..+.||...+.-+...|++.=
T Consensus 413 nmd~~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenl----p~L~~Hl~kl~l~PDiylidwiftlysksl 488 (586)
T KOG2223|consen 413 NMDLADAFIAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENL----PKLFTHLKKLELTPDIYLIDWIFTLYSKSL 488 (586)
T ss_pred cCCcHHHHHHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhcc----HHHHHHHHhccCCCchhhHHHHHHHHhccC
Confidence 4455666666666655442 223222 2222222223232 355666667788888888888888888888
Q ss_pred ChhhHHHHHHhcC-CCcHhHHHHHH
Q 045511 116 DIFSAHQIFNSVV-FPDVVTWTTII 139 (209)
Q Consensus 116 ~~~~a~~~~~~~~-~~~~~~~~~li 139 (209)
-++-|.++++-.. +-+.+.|-+.+
T Consensus 489 pldlacRIwDvy~rdgeeFlfr~~l 513 (586)
T KOG2223|consen 489 PLDLACRIWDVYCRDGEEFLFRTAL 513 (586)
T ss_pred ChHHhhhhhheeeecchHHHHHHHH
Confidence 8888888887763 33444444443
No 457
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=34.76 E-value=1.7e+02 Score=21.03 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=52.1
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc-C
Q 045511 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-V 128 (209)
Q Consensus 50 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~ 128 (209)
...++..+.+.|..-|..--...+..-.+.| ..-..+...+.+.|+ +..+-...+..+......+.|.+++..- .
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 4455555566665555554445555555544 334455566666663 3444445555555555555555544432 1
Q ss_pred C----CcHhHHHHHHHHHHhCC-ChHHHHHHHhhC
Q 045511 129 F----PDVVTWTTIISGLSKCG-FHKEAIDMFCGI 158 (209)
Q Consensus 129 ~----~~~~~~~~li~~~~~~g-~~~~a~~~~~~m 158 (209)
. ++..-..-+...+.+.| .++.+..++..+
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 1 33333444445555555 344555555544
No 458
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.45 E-value=2.8e+02 Score=23.23 Aligned_cols=174 Identities=9% Similarity=0.055 Sum_probs=92.2
Q ss_pred cchHhHHHHHHHHhhCCC-------cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHH---HHHHHHHHHhccccH
Q 045511 13 LSFKQLNQIHAQIIKIPQ-------PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY---TFTQALKACSLAHAH 82 (209)
Q Consensus 13 ~a~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~ 82 (209)
.+....+++........+ ...+..+-..|..+|+++.|++.|.+.+.- ..-..+ .|-.+|..-.-.|++
T Consensus 125 ~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw 203 (466)
T KOG0686|consen 125 KAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcch
Confidence 344555555555433222 267888999999999999999999985543 222223 333444445556776
Q ss_pred HHHHHHHHHHHHh---------ccCccHhHHHHHHHHHHhCCChhhHHHHHH----------hcCCCcHhHHHHHHHHHH
Q 045511 83 QKGLEIHAHVIKY---------GHLHDIFIQNSLLHFYVTVKDIFSAHQIFN----------SVVFPDVVTWTTIISGLS 143 (209)
Q Consensus 83 ~~a~~~~~~m~~~---------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----------~~~~~~~~~~~~li~~~~ 143 (209)
..+........+. .+.+-...+..|.....+ .+..|-+.|- .+..|...+--..+.+++
T Consensus 204 ~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALA 281 (466)
T KOG0686|consen 204 GHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALA 281 (466)
T ss_pred hhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhc
Confidence 6665555544433 133344455555555555 5555555552 333454444444555665
Q ss_pred hCCChHHHHHHHhhC------CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 144 KCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
--++-+.-.++.+.- .+.|.... .+-+.| .+++....+++++++.+
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel~Pqlr~--il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLELEPQLRE--ILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhcChHHHH--HHHHHh--hhhHHHHHHHHHHhccc
Confidence 555444333333222 44454432 223333 24566666666655433
No 459
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.42 E-value=1.4e+02 Score=19.79 Aligned_cols=76 Identities=14% Similarity=-0.010 Sum_probs=43.1
Q ss_pred ChhhHHHHHHhcC-CC--cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 116 DIFSAHQIFNSVV-FP--DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 116 ~~~~a~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
..++|..+.+-.. .+ ...+--+-+..+.+.|++++|+..=.. ...||...|-.+ +-.+.|-.++++.-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~-~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQC-HCYPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTT-S--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhccc-CCCccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 3455555554441 11 122222345677889999999433333 667888888655 33477888888888887766
Q ss_pred hc
Q 045511 193 NL 194 (209)
Q Consensus 193 ~~ 194 (209)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 66
No 460
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.31 E-value=1.3e+02 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHhc
Q 045511 104 QNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
|..|+..|..+|..++|.+++.+.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHH
Confidence 444444444444444444444443
No 461
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.28 E-value=1.2e+02 Score=21.01 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHhccCc-cHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 81 AHQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+..+...+++.+.++.-+. .....--|--++.|.++++.+.++.+..
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 3444555555555422111 1222223333555555555555555543
No 462
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.25 E-value=2.9e+02 Score=23.47 Aligned_cols=89 Identities=2% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHH------HHHHHHHHH
Q 045511 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ------KGLEIHAHV 92 (209)
Q Consensus 19 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~------~a~~~~~~m 92 (209)
.+..+.............++.+... ++++.|..++.+|...|..|....-..+..++-..|.-+ .+...++..
T Consensus 232 ~e~V~~~l~~~~~~~i~~li~si~~-~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~ 310 (472)
T PRK14962 232 LETVHEALGLIPIEVVRDYINAIFN-GDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNIL 310 (472)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Q ss_pred HHhccCccHhHHHHHH
Q 045511 93 IKYGHLHDIFIQNSLL 108 (209)
Q Consensus 93 ~~~g~~~~~~~~~~ll 108 (209)
.+-|.+.......-++
T Consensus 311 ~~i~~~e~~~~l~~~~ 326 (472)
T PRK14962 311 REIKFAEEKRLVCKLG 326 (472)
T ss_pred HHhCCcchHHHHHHHH
No 463
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=34.17 E-value=2.2e+02 Score=22.01 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=54.4
Q ss_pred HHhCCChhhHHHHHHhcCC--CcHhHHHHHHHHHHhCCChHHHHHHHhhC-------CCCCCHHhHHHHHHHhccccchh
Q 045511 111 YVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLGSRK 181 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~p~~~t~~~li~~~~~~g~~~ 181 (209)
-|-+|++++|.+.++.++. -|.......+.--|+.|+++...-+|.+. -++| ....-+-+.+...|+..
T Consensus 20 ~CLNr~Fd~vL~~~R~~p~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P--~lLCDi~nlal~~~k~f 97 (267)
T PF05476_consen 20 QCLNREFDDVLAELRQIPVDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEP--RLLCDIGNLALHEGKYF 97 (267)
T ss_pred HHhhhhHHHHHHHHHcCcHhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccCh--hHHHHHHHHHHhcCCCc
Confidence 3557889999999988853 46667777777788889999988888877 2333 34446666666677666
Q ss_pred HHHHHHHH
Q 045511 182 LGKAIHAH 189 (209)
Q Consensus 182 ~a~~~~~~ 189 (209)
-..+++..
T Consensus 98 ip~ql~~h 105 (267)
T PF05476_consen 98 IPSQLYMH 105 (267)
T ss_pred CHHHHHHH
Confidence 66655553
No 464
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=34.06 E-value=1.3e+02 Score=21.51 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCC-CccchHHHHHHhhhCC----CCCCHH---HHHHHHHHHhccccHHHHHHHHHHHHH-hccCccHhHH
Q 045511 34 LNTLLKLLTQSS-TPQNAIPLYNKMLNCP----SSYNHY---TFTQALKACSLAHAHQKGLEIHAHVIK-YGHLHDIFIQ 104 (209)
Q Consensus 34 ~~~li~~~~~~g-~~~~a~~l~~~m~~~g----~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~ 104 (209)
.+.+...+...- +-.+|..+|..+.+.. +.++.. .....+..+.+.- -.++++.+.+ .|+.+...+.
T Consensus 95 m~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~ 170 (199)
T smart00164 95 MNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYAL 170 (199)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHH
Confidence 344444444332 4567777777775532 334432 2223333333333 3467777775 8899999999
Q ss_pred HHHHHHHHhCCChhhHHHHHHhc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
.=++..+.+.-.++.+.+++|.+
T Consensus 171 ~W~~~lF~~~~~~~~~~riwD~~ 193 (199)
T smart00164 171 RWFLTLFARELPLEIVLRIWDVL 193 (199)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHH
Confidence 99999999888899999999875
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.67 E-value=2.7e+02 Score=22.97 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
..+.+.+..++..|.+.|..|....--.++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35677777777777777766554333333333
No 466
>PRK09687 putative lyase; Provisional
Probab=33.26 E-value=2.3e+02 Score=22.03 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=33.9
Q ss_pred CCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 128 VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 128 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
..++..+-...+.++++.|+..-.-.+.+.++- ++ .....+.++...|+. ++...+..+.+.
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred cCCChHHHHHHHHHHHccCChhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 445556666666677766664333333333321 22 234566777777775 466666665553
No 467
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=2.5e+02 Score=22.36 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=76.4
Q ss_pred HHhccccHHHHHHHHHHHHHhccCccHh-------HHHHHHHHHHhCCChhhHHHHH-------HhcCC-CcHhHHHHHH
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIF-------IQNSLLHFYVTVKDIFSAHQIF-------NSVVF-PDVVTWTTII 139 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~-------~~~~~-~~~~~~~~li 139 (209)
-..+..++++|...+..++.+|+..+.. +...+.+.|.+.|+...--+.. ..... +.+...-++|
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3456789999999999999999877655 4457888899998866554443 22222 2344555566
Q ss_pred HHHHhCC-ChHHHHHHHhhC---CCC-----CCHHhHHHHHHHhccccchhHHHHHHH----HHHHhccCCCch
Q 045511 140 SGLSKCG-FHKEAIDMFCGI---DVK-----PNANTLVSVLSACSSLGSRKLGKAIHA----HSLRNLNENNII 200 (209)
Q Consensus 140 ~~~~~~g-~~~~a~~~~~~m---~~~-----p~~~t~~~li~~~~~~g~~~~a~~~~~----~~~~~~~~p~~~ 200 (209)
.-+-... .++..+.+.... ..+ .-...=.-+|..+.+.|++..|..+.. ++++..-+|+..
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 5554433 344444444433 000 011122446777888899988887655 555555565543
No 468
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=32.59 E-value=1.1e+02 Score=17.95 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=28.6
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
++..+.+.+.+-....+.+.+...|...+..+....+.++-+.|
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 44555666666777777777777776666666666666665555
No 469
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=32.25 E-value=77 Score=27.84 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=46.2
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cCccHhHHHHHHHHHHhC-
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTV- 114 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~- 114 (209)
....+.-+|+++.|.+.+-+ ..+...+.+.+.+.+..++-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 45566678999999999876 4456678899999988886665544333 2222111 112226788899988874
Q ss_pred --CChhhHHHHHHhc
Q 045511 115 --KDIFSAHQIFNSV 127 (209)
Q Consensus 115 --g~~~~a~~~~~~~ 127 (209)
.++.+|.+++--+
T Consensus 339 ~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 339 EITDPREALQYLYLI 353 (613)
T ss_dssp TTT-HHHHHHHHHGG
T ss_pred hccCHHHHHHHHHHH
Confidence 5778888887655
No 470
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=32.24 E-value=2.7e+02 Score=22.52 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=10.0
Q ss_pred CcHhHHHHHHHHHHhCCChHH
Q 045511 130 PDVVTWTTIISGLSKCGFHKE 150 (209)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~ 150 (209)
+|...-..++++++.......
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhH
Confidence 345555555555544444333
No 471
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.20 E-value=2.1e+02 Score=24.33 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCC--CCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
-...|+.-|.-.|+..+|.+..+++| +--....+.+++.+.-+.|+-.....+++..-+.|
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 35688999999999999999999993 33455788899999988888776666666554444
No 472
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.13 E-value=1.9e+02 Score=21.72 Aligned_cols=51 Identities=10% Similarity=-0.053 Sum_probs=21.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc---ccHHHHHHHHHcCCCccchHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP---HILNTLLKLLTQSSTPQNAIPLYNKM 57 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m 57 (209)
+.|..++|.+.+..+....+..|.- +.|..--.++.+.+.++.|..--.+.
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3444444444444444443222211 33444444444444444444443333
No 473
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.98 E-value=1.6e+02 Score=19.86 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=34.9
Q ss_pred cchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccccHHHHHHHHH
Q 045511 48 QNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHAHQKGLEIHA 90 (209)
Q Consensus 48 ~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~ 90 (209)
++..++|..|.++|+--.. .-|...-..+-..|++..|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6688899999999975443 557777788888899999999985
No 474
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.98 E-value=2.6e+02 Score=22.12 Aligned_cols=77 Identities=5% Similarity=0.071 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHhccCcc---HhHHHHHHHHHHhCCChhhHHHHHHhcC---------CCcHhHHHHHHHHHHhCC
Q 045511 79 AHAHQKGLEIHAHVIKYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSVV---------FPDVVTWTTIISGLSKCG 146 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~g 146 (209)
..++++|..-|+..++-.-... -...-.+|..+.+.|++++.++.+.++- .-+..+.|+++.--+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467778887877765432222 2344566777778888887777777651 123445566665555555
Q ss_pred ChHHHHHHH
Q 045511 147 FHKEAIDMF 155 (209)
Q Consensus 147 ~~~~a~~~~ 155 (209)
+.+.-.++|
T Consensus 120 ~m~LLQ~FY 128 (440)
T KOG1464|consen 120 NMDLLQEFY 128 (440)
T ss_pred hhHHHHHHH
Confidence 544433333
No 475
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.91 E-value=2.4e+02 Score=21.70 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=56.9
Q ss_pred HHcCCCccchHH----HHHHhhhCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhc--cCccHhHHHHHHH
Q 045511 41 LTQSSTPQNAIP----LYNKMLNCPSSYNHYTFTQALKACSLAHA-----HQKGLEIHAHVIKYG--HLHDIFIQNSLLH 109 (209)
Q Consensus 41 ~~~~g~~~~a~~----l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g--~~~~~~~~~~ll~ 109 (209)
+.+.|+...|-+ +++-..+.+.++|......++..+...+. .+-..+...+- +.| ..-++.....+-.
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHH
Confidence 444555544433 35555567777787777777776655532 22233333333 222 2235677788888
Q ss_pred HHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHH
Q 045511 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKE 150 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 150 (209)
.|.+.|++.+|+.-|---..++...+-.++.-....|...+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc
Confidence 99999999999988866555555555334443333444433
No 476
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.89 E-value=2.1e+02 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCChhhHHHHHHhc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..|+.-|.+.+++++|..++..|
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Confidence 34555666666666666666666
No 477
>PHA02798 ankyrin-like protein; Provisional
Probab=31.76 E-value=3e+02 Score=23.24 Aligned_cols=143 Identities=11% Similarity=-0.061 Sum_probs=68.4
Q ss_pred HHHHHHhhhCCCCCCHHH---HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhCC---ChhhHHH
Q 045511 51 IPLYNKMLNCPSSYNHYT---FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTVK---DIFSAHQ 122 (209)
Q Consensus 51 ~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g---~~~~a~~ 122 (209)
.++++.+.+.|..+|... .+.+..++..........++.+.+.+.|..++... -.+.+...+..| ..+-+.-
T Consensus 51 ~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~ 130 (489)
T PHA02798 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLF 130 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHH
Confidence 456666777787665311 11222222111223344788888889997766432 234444455444 4555555
Q ss_pred HHHhcCCC---cHhHHHHHHHHHHhCCC---hHHHHHHHhhCCCCCCHH----hHHHHHHH---hccccchhHHHHHHHH
Q 045511 123 IFNSVVFP---DVVTWTTIISGLSKCGF---HKEAIDMFCGIDVKPNAN----TLVSVLSA---CSSLGSRKLGKAIHAH 189 (209)
Q Consensus 123 ~~~~~~~~---~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~p~~~----t~~~li~~---~~~~g~~~~a~~~~~~ 189 (209)
+++.-..+ |..-++. +..+++.|+ .+-+.-+++. |..++.. -++.+..+ ....++ .++++.
T Consensus 131 Ll~~Gadvn~~d~~g~tp-L~~a~~~~~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~~~~~~~~~----~~ivk~ 204 (489)
T PHA02798 131 MIENGADTTLLDKDGFTM-LQVYLQSNHHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCYFKYNIDRID----ADILKL 204 (489)
T ss_pred HHHcCCCccccCCCCCcH-HHHHHHcCCcchHHHHHHHHHh-CCCcccccCcCCCcHHHHHHHhccccCC----HHHHHH
Confidence 55543332 2222333 344455554 5544444443 6555432 12222222 122233 346666
Q ss_pred HHHhccCCCc
Q 045511 190 SLRNLNENNI 199 (209)
Q Consensus 190 ~~~~~~~p~~ 199 (209)
+.+.|..++.
T Consensus 205 Li~~Ga~i~~ 214 (489)
T PHA02798 205 FVDNGFIINK 214 (489)
T ss_pred HHHCCCCccc
Confidence 7777765543
No 478
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=31.50 E-value=27 Score=23.55 Aligned_cols=27 Identities=4% Similarity=0.033 Sum_probs=19.1
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHH
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFT 70 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~ 70 (209)
.|+.++|..+++.++.+|..|....|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 578888999999999999887766544
No 479
>COG5210 GTPase-activating protein [General function prediction only]
Probab=31.45 E-value=1.7e+02 Score=24.88 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=56.8
Q ss_pred ccchHHHHHHhhh-CCC----CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHH
Q 045511 47 PQNAIPLYNKMLN-CPS----SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 47 ~~~a~~l~~~m~~-~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
-+.|...+..+.+ .++ .++..........+.. ---+...+++..+.+.|+.....++.-++..+.+.-..+.|.
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~-~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~l 397 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDD-LVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYAL 397 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHH
Confidence 5677777777776 332 2333333333333322 122345678999999999999999999999999999999999
Q ss_pred HHHHhc
Q 045511 122 QIFNSV 127 (209)
Q Consensus 122 ~~~~~~ 127 (209)
++++.+
T Consensus 398 riwD~l 403 (496)
T COG5210 398 RIWDCL 403 (496)
T ss_pred HHHHHH
Confidence 999887
No 480
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.94 E-value=2.1e+02 Score=24.02 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhc--cCcc-HhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYG--HLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
.+.--+|..+.-.|+.....+.++.|.+.- -.|. .+|| -+--+|.-.+++.+|.+.|-.+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY-~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTY-QVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEee-ehhHHHHHHHHHHHHHHHHHHH
Confidence 445556777777888888888888876552 2222 1232 1222445567888888888654
No 481
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=30.88 E-value=1.7e+02 Score=19.66 Aligned_cols=37 Identities=11% Similarity=-0.177 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhH
Q 045511 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 120 (209)
...+.++...+.-..-.+..|+.++..+.+.|+..-+
T Consensus 73 ~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~ 109 (134)
T cd01041 73 DTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAA 109 (134)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3334444444332222334555555555555554433
No 482
>PRK11906 transcriptional regulator; Provisional
Probab=30.41 E-value=3.4e+02 Score=23.03 Aligned_cols=128 Identities=8% Similarity=-0.050 Sum_probs=0.0
Q ss_pred CCcchHhHHHHHHHHhhCCCcccHHHHHHHH--HcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccccHHHHHH
Q 045511 11 PTLSFKQLNQIHAQIIKIPQPHILNTLLKLL--TQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 11 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~ 87 (209)
++.+...-.++-+.-........+...+.++ .-.++.+.+..+|++-.. +.||. .+|...--.+.-.|+.++|.+
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHH-HHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc-CCCcHhHHHHHHH
Q 045511 88 IHAH-VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVTWTTIIS 140 (209)
Q Consensus 88 ~~~~-m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~li~ 140 (209)
.++. +.-+.........-..++.|+.++--+...-++.+- ++...+....+++
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILK 448 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccccchhhHHHHHH
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.33 E-value=2.3e+02 Score=24.50 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC--CCCCCH--HhHHHHHHHhccccchhHHHHHHHHHHHhccCCC
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI--DVKPNA--NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENN 198 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 198 (209)
....++.-|.+.+++++|..++..| +..+.. .+.+.+.+...+..--.+.+..++.....=..|.
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~ 478 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPT 478 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCC
Confidence 3456888999999999999999999 333333 3456666666666544445555555544433343
No 484
>PF09520 RE_TdeIII: Type II restriction endonuclease, TdeIII; InterPro: IPR019045 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease MjaII, which recognises the double-stranded sequence GGNCC, but the cleavage site is unknown. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=29.55 E-value=53 Score=25.21 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=78.8
Q ss_pred ccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhH---------------HHHHHhc--CCCcHhHH----H
Q 045511 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA---------------HQIFNSV--VFPDVVTW----T 136 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a---------------~~~~~~~--~~~~~~~~----~ 136 (209)
.....+...++.+.+...+..|+...++..+...++.+..... +.++=++ +.||..-+ -
T Consensus 97 ~~~~~~~I~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~Dlyi~~~dg~~~~feiKt~KPN~~q~~~~kq 176 (251)
T PF09520_consen 97 SSQQQEKIDEIIDDLKSKGNKPNKPSEIEEIREICKKGNRNIEEPTVVADLYIENKDGEEYYFEIKTVKPNKGQFKEEKQ 176 (251)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCcccHHHHHHHHHhcCcccccCCceEEEEEEEeCCceEEEEEecCCCCChHHHHHHHH
Confidence 3345566777788887778899999999999888877653321 1111111 35765433 3
Q ss_pred HHHHHHHhCCChHHHHHHHhhC-----CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 137 TIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m-----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
.|+..++...+.+.-...|=.| | .|...++..+...+-....+--+.++|+.+-. ..||..|++.|
T Consensus 177 ~lL~~~a~~~~p~~~i~~~ia~PYNPyg-~~~~y~~~~~~~~~d~~~evlIg~efWdflgg------~~tye~ll~if 247 (251)
T PF09520_consen 177 KLLRWKAILQNPDKKIHTYIAIPYNPYG-EPEPYSRSTVKGYFDFDEEVLIGNEFWDFLGG------EGTYEELLEIF 247 (251)
T ss_pred HHHHHHHhhcCCCcceeEEEEeecCCCC-CcccchHHHHHhccCCchhheehHHHHHHhcC------ccHHHHHHHHH
Confidence 4556666555666655666566 4 67777777666555333466677788877633 35888888764
No 485
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=29.45 E-value=2.9e+02 Score=21.94 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=13.2
Q ss_pred HHHHHHHhhCCCcccHHHHHH
Q 045511 19 NQIHAQIIKIPQPHILNTLLK 39 (209)
Q Consensus 19 ~~~~~~~~~~p~~~~~~~li~ 39 (209)
+++++..+..|+-..||+++.
T Consensus 74 ~~V~~~VG~ePSG~~FNsi~~ 94 (300)
T TIGR03814 74 DEVWERVGVEPSGDPFNSIVQ 94 (300)
T ss_pred HHHHHHhCCCCCCCCccchhh
Confidence 445555566677777777654
No 486
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.00 E-value=3.5e+02 Score=23.29 Aligned_cols=70 Identities=7% Similarity=0.126 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCC------C----------CCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP------S----------SYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 93 (209)
+......+.. ...|++..|..++++....+ + .++....-.++.+.. .++.+.|..+++++.
T Consensus 208 e~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~-~~d~~~Al~~l~~L~ 284 (507)
T PRK06645 208 DIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYII-HRETEKAINLINKLY 284 (507)
T ss_pred CHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 3344444443 23578888888888774321 1 133333444455543 488999999999999
Q ss_pred HhccCccHh
Q 045511 94 KYGHLHDIF 102 (209)
Q Consensus 94 ~~g~~~~~~ 102 (209)
..|..|...
T Consensus 285 ~~g~~~~~~ 293 (507)
T PRK06645 285 GSSVNLEIF 293 (507)
T ss_pred HcCCCHHHH
Confidence 999776643
No 487
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=28.96 E-value=1.3e+02 Score=18.13 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=10.9
Q ss_pred CccchHHHHHHhhhCC
Q 045511 46 TPQNAIPLYNKMLNCP 61 (209)
Q Consensus 46 ~~~~a~~l~~~m~~~g 61 (209)
+...+.++|..|.+.|
T Consensus 35 ~~~s~l~lf~~Le~~~ 50 (77)
T cd00045 35 KIKTPFDLFLVLERQG 50 (77)
T ss_pred ccCCHHHHHHHHHHcC
Confidence 4556677777777776
No 488
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.94 E-value=2.4e+02 Score=20.85 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCccH-hHHHHHHHHHHhCCCh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI-FIQNSLLHFYVTVKDI 117 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~ 117 (209)
..+.++..|...|+++.|.++|..+.+.. +.|. ..|+.=+..+.+.+.-
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~ 92 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQ 92 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCc
Confidence 35666777777777777777777776553 2332 2344444444444433
No 489
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.90 E-value=1.5e+02 Score=18.56 Aligned_cols=63 Identities=6% Similarity=-0.049 Sum_probs=40.4
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhH
Q 045511 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSA 120 (209)
Q Consensus 50 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 120 (209)
+..++..+.+.|+- +...+..+- +...+.+.+..+++.+..+| +.+|...+.++-..|...-|
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~~~I~---~~~t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMAESIM---AKPTSFSQNVALLNLLPKRG----PRAFSAFCEALRETSQEHLC 84 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHH---cCCCcHHHHHHHHHHHHHhC----hhHHHHHHHHHHhcChHHHH
Confidence 44566667776652 323233322 23356788899999998887 77888888888765554333
No 490
>PHA02859 ankyrin repeat protein; Provisional
Probab=28.79 E-value=2.3e+02 Score=20.67 Aligned_cols=120 Identities=4% Similarity=-0.179 Sum_probs=62.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC--CChhhHHHHHHhcCCCcH----hHHHHHHHHHH
Q 045511 70 TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDV----VTWTTIISGLS 143 (209)
Q Consensus 70 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~----~~~~~li~~~~ 143 (209)
..-+...++.|+.+.++.+++.. -..|..-.+ .+..++.. |..+-++-+++.=..++. .-++.+..+..
T Consensus 22 ~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~T-pLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~ 96 (209)
T PHA02859 22 CNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYET-PIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS 96 (209)
T ss_pred CcHHHHHHHhCcHHHHHHHHHhh----hccCccCCC-HHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence 34455556788888888776542 223433333 33444443 467777777765433332 22344444433
Q ss_pred h--CCChHHHHHHHhhCCCCCCHH---hHHHHHHHhcc-ccchhHHHHHHHHHHHhccCCCc
Q 045511 144 K--CGFHKEAIDMFCGIDVKPNAN---TLVSVLSACSS-LGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 144 ~--~g~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
. .++. +..+++-+-|..++.. -.+.+..++.. .++. ++...+.+.|..++.
T Consensus 97 ~~~~~~~-eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~----~iv~~Li~~gadin~ 153 (209)
T PHA02859 97 FNKNVEP-EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRI----NVIKLLIDSGVSFLN 153 (209)
T ss_pred hCccccH-HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCH----HHHHHHHHcCCCccc
Confidence 3 2344 3444443447676654 34555544432 2333 455666788877654
No 491
>KOG4511 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.74 E-value=2.9e+02 Score=21.63 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=26.2
Q ss_pred HHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 150 EAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 150 ~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
.|+++...| |+-|+..+-..=+.+=.+..--+.+.+++...
T Consensus 125 QAl~~Ie~~ngl~P~~l~~G~d~~~d~~~~p~~t~reVl~~v 166 (335)
T KOG4511|consen 125 QALQMIEFMNGLIPSVLQLGEDLRNDKKLSPEETEREVLISV 166 (335)
T ss_pred HHHHHHHHHhCcCcchhccchhhhhhhhcChHHHHHHHHHHH
Confidence 578888888 88888876654444444444455555665543
No 492
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=28.71 E-value=2.1e+02 Score=26.15 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=49.0
Q ss_pred HhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHH
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKE 150 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 150 (209)
.+..|+.+ +.+.+.+.|..+|... -.+.++..+..|..+-+.-+++.-..+ |..-.+. +..-+..|+.+-
T Consensus 532 Aa~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~Tp-L~~A~~~g~~~i 606 (823)
T PLN03192 532 VASTGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA-LWNAISAKHHKI 606 (823)
T ss_pred HHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCH-HHHHHHhCCHHH
Confidence 34566654 3444555666665443 245566666777766666665543222 2222222 233334555555
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHH
Q 045511 151 AIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 151 a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
+.-+++.- -..+..+-...+...+..|+.+.++.+
T Consensus 607 v~~L~~~~-~~~~~~~~~~~L~~Aa~~g~~~~v~~L 641 (823)
T PLN03192 607 FRILYHFA-SISDPHAAGDLLCTAAKRNDLTAMKEL 641 (823)
T ss_pred HHHHHhcC-cccCcccCchHHHHHHHhCCHHHHHHH
Confidence 44444322 111222222345555566666544433
No 493
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=28.62 E-value=1.5e+02 Score=18.27 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=17.9
Q ss_pred CChhhHHHHHHhcCCCcHhHHHHHHHHHHhC
Q 045511 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKC 145 (209)
Q Consensus 115 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 145 (209)
...+++..+++.++.....+|..++.++...
T Consensus 48 t~~~~~~~Lld~l~~kG~~Af~~F~~~L~~~ 78 (88)
T smart00114 48 TKLRDKRELVDSLQKRGSQAFDTFLDSLQET 78 (88)
T ss_pred ChHHHHHHHHHHHHhHhHHHHHHHHHHHHHc
Confidence 3445555566666666666666666666433
No 494
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=28.44 E-value=1.5e+02 Score=18.46 Aligned_cols=67 Identities=9% Similarity=-0.050 Sum_probs=45.7
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHH
Q 045511 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124 (209)
Q Consensus 50 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 124 (209)
+..+++.|.+.|+ .+..-+..+- .+..+.+.|..+++.+..+| ..+|....+++-..|...-|.-+-
T Consensus 16 v~~ild~L~~~gv-lt~~~~e~I~---~~~t~~~qa~~Lld~L~trG----~~Af~~F~~aL~~~~~~~La~lL~ 82 (86)
T cd08323 16 TSYIMDHMISDGV-LTLDEEEKVK---SKATQKEKAVMLINMILTKD----NHAYVSFYNALLHEGYKDLALLLH 82 (86)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHH---cCCChHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCChHHHHHHh
Confidence 5567777777775 3433333332 25567788999999988887 778888888887777666665443
No 495
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.42 E-value=3.8e+02 Score=23.56 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=34.5
Q ss_pred HcCCCccchHHHHHHhhhCCC--------------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc
Q 045511 42 TQSSTPQNAIPLYNKMLNCPS--------------SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD 100 (209)
Q Consensus 42 ~~~g~~~~a~~l~~~m~~~g~--------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 100 (209)
...|++..+..+++++...+. ..+......++.+. ..++...+..+++.+.+.|..|.
T Consensus 208 ~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~~~~~~i~~lv~al-~~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 208 AGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALIDDAVDAL-AADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred HcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 345778888888887654321 01222233344433 44677888888888887776554
No 496
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=28.31 E-value=3.9e+02 Score=23.08 Aligned_cols=112 Identities=11% Similarity=-0.021 Sum_probs=61.6
Q ss_pred ccccHHHH-HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHH
Q 045511 78 LAHAHQKG-LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 78 ~~~~~~~a-~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 153 (209)
..|++..| .++++.+....-.|+.+..-+.| +...|+++.+.+.+.... .....+--++++.....|+|++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555433 34455554443345444333333 455678888887776653 3456677788888888888888888
Q ss_pred HHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 154 MFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 154 ~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
+-..| |-+. +....+..--..-..|-++++...|.++.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 87777 2211 22222211112223455666666666553
No 497
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.25 E-value=1.5e+02 Score=18.33 Aligned_cols=41 Identities=5% Similarity=-0.127 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHH
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 124 (209)
.+.+.+.+....+.. ....|...|+.++.+.|.-+-|+++|
T Consensus 46 ~eq~~~mL~~W~~r~--g~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDRE--GSQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhc--CccccHHHHHHHHHHcCcHHHHHhhC
Confidence 344555555444432 13356667777777777666666554
No 498
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.18 E-value=3.9e+02 Score=23.06 Aligned_cols=115 Identities=12% Similarity=-0.022 Sum_probs=74.9
Q ss_pred CCCccchHHHHHHhhhCC-CCCC--H-----HHHHHHHH-HHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHHHH
Q 045511 44 SSTPQNAIPLYNKMLNCP-SSYN--H-----YTFTQALK-ACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHFYV 112 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g-~~p~--~-----~t~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~ 112 (209)
.|+..+|++-+..|++.- -.|. . .....++. .|+..+.++.|+.-|....+.--..|.. .-..+-..|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 589999999999998753 1233 1 12233333 3456678888887776655544344443 3345666889
Q ss_pred hCCChhhHHHHHHhcCCCcHhHHHHH--------HHHH--HhCCChHHHHHHHhhC
Q 045511 113 TVKDIFSAHQIFNSVVFPDVVTWTTI--------ISGL--SKCGFHKEAIDMFCGI 158 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~~~~~~~~~l--------i~~~--~~~g~~~~a~~~~~~m 158 (209)
+.|+.++-.++.+.+..+|..++++- +.|+ ...+++.+|..+.++-
T Consensus 416 ~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 416 RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999977654443321 2222 3578899999888875
No 499
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=28.17 E-value=1.6e+02 Score=18.41 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=21.3
Q ss_pred hCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCC
Q 045511 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCG 146 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 146 (209)
...+.+.|.++++.++ .+...|.++++++-..+
T Consensus 42 ~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 42 RTTSRKQAGKLLDILA-ENPKGLDALIESIRRER 74 (84)
T ss_pred cCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHcc
Confidence 4556666666666666 66666666666665554
No 500
>smart00031 DED Death effector domain.
Probab=27.51 E-value=1.5e+02 Score=17.99 Aligned_cols=40 Identities=3% Similarity=-0.131 Sum_probs=20.8
Q ss_pred ccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 045511 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 47 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
...+.++|..|.+.|.. +......+...+...++.+....
T Consensus 37 ~~~~ldlf~~Le~~~~l-~~~nl~~L~elL~~i~R~DLl~~ 76 (79)
T smart00031 37 IKTFLDLFSALEEQGLL-SEDNLSLLAELLYRLRRLDLLRR 76 (79)
T ss_pred cCCHHHHHHHHHHcCCC-CCccHHHHHHHHHHcCHHHHHHH
Confidence 46677777777777632 22233344444444455544433
Done!