Query 045511
Match_columns 209
No_of_seqs 152 out of 1386
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 04:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.5E-40 2.9E-44 269.5 18.0 179 31-209 26-220 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.4E-35 2.9E-39 239.7 16.9 176 2-178 32-224 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 8.6E-24 2.9E-28 181.6 7.1 145 32-178 128-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 3.4E-23 1.2E-27 178.0 8.8 112 66-177 127-249 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 3.9E-19 1.3E-23 148.5 16.2 202 3-208 312-525 (597)
6 2xpi_A Anaphase-promoting comp 99.8 1.2E-18 4E-23 145.6 17.9 196 7-207 351-558 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.6 1.1E-12 3.8E-17 104.0 20.3 158 34-193 138-300 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.5 8.3E-13 2.8E-17 104.7 19.3 160 32-193 204-368 (388)
9 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 8E-17 95.9 20.7 198 4-206 45-249 (252)
10 2y4t_A DNAJ homolog subfamily 99.5 5E-13 1.7E-17 107.7 16.2 182 7-193 72-286 (450)
11 2y4t_A DNAJ homolog subfamily 99.5 1.2E-12 4.2E-17 105.4 16.5 186 4-193 34-240 (450)
12 2vq2_A PILW, putative fimbrial 99.5 6.7E-12 2.3E-16 91.4 18.2 198 4-206 16-222 (225)
13 3mkr_A Coatomer subunit epsilo 99.5 4.9E-13 1.7E-17 102.8 12.1 156 32-193 66-229 (291)
14 2q7f_A YRRB protein; TPR, prot 99.5 7.8E-12 2.7E-16 92.3 17.1 184 7-194 35-223 (243)
15 4eqf_A PEX5-related protein; a 99.5 3E-12 1E-16 100.6 15.6 184 7-193 77-310 (365)
16 3uq3_A Heat shock protein STI1 99.4 5.2E-12 1.8E-16 93.9 14.8 185 7-194 17-237 (258)
17 1fch_A Peroxisomal targeting s 99.4 5.8E-12 2E-16 98.7 15.2 184 7-193 76-314 (368)
18 3hym_B Cell division cycle pro 99.4 2.2E-11 7.7E-16 93.7 18.2 183 7-193 68-265 (330)
19 3cv0_A Peroxisome targeting si 99.4 7.9E-12 2.7E-16 96.1 15.1 118 76-194 148-270 (327)
20 1b89_A Protein (clathrin heavy 99.4 2.4E-13 8.1E-18 109.1 5.7 140 28-184 58-197 (449)
21 1b89_A Protein (clathrin heavy 99.4 9.4E-14 3.2E-18 111.4 3.1 171 8-208 16-186 (449)
22 3mkr_A Coatomer subunit epsilo 99.4 1.8E-11 6.1E-16 94.1 15.5 178 7-193 77-264 (291)
23 2vq2_A PILW, putative fimbrial 99.4 3.3E-11 1.1E-15 87.7 15.8 163 30-194 7-177 (225)
24 3hym_B Cell division cycle pro 99.4 5.5E-11 1.9E-15 91.5 17.7 183 7-193 34-222 (330)
25 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-10 3.9E-15 86.7 18.2 161 31-193 37-204 (252)
26 2pl2_A Hypothetical conserved 99.4 3.1E-11 1.1E-15 88.6 14.3 181 7-191 17-212 (217)
27 3as5_A MAMA; tetratricopeptide 99.4 8.8E-11 3E-15 82.7 16.2 161 32-194 9-174 (186)
28 1fch_A Peroxisomal targeting s 99.3 1.4E-11 4.7E-16 96.6 12.4 183 9-193 39-280 (368)
29 2pl2_A Hypothetical conserved 99.3 1.5E-10 5.1E-15 85.0 17.1 163 29-193 3-180 (217)
30 2q7f_A YRRB protein; TPR, prot 99.3 8.7E-11 3E-15 86.6 15.4 174 29-205 21-199 (243)
31 2gw1_A Mitochondrial precursor 99.3 3.7E-11 1.3E-15 98.0 14.4 183 7-193 282-478 (514)
32 4eqf_A PEX5-related protein; a 99.3 1.7E-11 5.8E-16 96.3 10.3 185 3-188 140-351 (365)
33 3cv0_A Peroxisome targeting si 99.3 5.7E-11 2E-15 91.2 12.8 194 7-205 33-246 (327)
34 3ieg_A DNAJ homolog subfamily 99.3 3.3E-10 1.1E-14 87.9 16.8 187 4-193 11-217 (359)
35 3vtx_A MAMA; tetratricopeptide 99.3 7E-10 2.4E-14 78.7 17.2 162 30-193 4-170 (184)
36 2gw1_A Mitochondrial precursor 99.3 4.3E-10 1.5E-14 91.7 18.0 186 4-194 245-445 (514)
37 3uq3_A Heat shock protein STI1 99.3 1.8E-10 6.3E-15 85.4 14.5 161 32-194 6-203 (258)
38 3ieg_A DNAJ homolog subfamily 99.2 1.1E-09 3.7E-14 84.9 18.5 186 4-193 128-335 (359)
39 3u4t_A TPR repeat-containing p 99.2 1.3E-09 4.4E-14 81.8 16.5 184 7-193 15-208 (272)
40 3fp2_A TPR repeat-containing p 99.2 1.1E-09 3.7E-14 90.0 16.8 183 7-194 255-458 (537)
41 2ond_A Cleavage stimulation fa 99.2 1.7E-09 5.7E-14 83.5 16.6 178 12-194 81-271 (308)
42 1xnf_A Lipoprotein NLPI; TPR, 99.2 8E-10 2.7E-14 82.9 14.5 186 7-194 17-245 (275)
43 3nf1_A KLC 1, kinesin light ch 99.2 1.6E-10 5.5E-15 88.1 9.8 190 4-193 35-307 (311)
44 2fo7_A Synthetic consensus TPR 99.2 1.4E-09 4.7E-14 72.2 13.2 122 34-157 4-128 (136)
45 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.9E-10 1E-14 85.3 10.7 152 41-193 15-173 (275)
46 3edt_B KLC 2, kinesin light ch 99.1 2.1E-10 7.2E-15 86.1 9.8 186 7-192 13-280 (283)
47 4gyw_A UDP-N-acetylglucosamine 99.1 1.2E-09 4.2E-14 93.6 15.6 159 31-192 9-173 (723)
48 3fp2_A TPR repeat-containing p 99.1 6.6E-10 2.3E-14 91.2 13.5 159 33-194 245-408 (537)
49 2fo7_A Synthetic consensus TPR 99.1 5.1E-09 1.7E-13 69.4 15.3 125 68-193 3-132 (136)
50 4i17_A Hypothetical protein; T 99.1 9.3E-09 3.2E-13 75.4 18.1 164 29-193 5-209 (228)
51 2ond_A Cleavage stimulation fa 99.1 6.4E-09 2.2E-13 80.1 17.6 189 14-206 35-248 (308)
52 3vtx_A MAMA; tetratricopeptide 99.1 2.6E-09 9E-14 75.7 13.8 161 3-167 12-177 (184)
53 4abn_A Tetratricopeptide repea 99.1 1E-09 3.6E-14 89.8 12.3 176 7-187 114-315 (474)
54 3u4t_A TPR repeat-containing p 99.1 1.2E-08 4.2E-13 76.4 17.3 162 32-194 4-172 (272)
55 2h6f_A Protein farnesyltransfe 99.1 5.2E-09 1.8E-13 83.4 15.2 180 7-190 109-302 (382)
56 3as5_A MAMA; tetratricopeptide 99.1 1E-09 3.4E-14 77.1 9.7 148 7-158 20-170 (186)
57 1ouv_A Conserved hypothetical 99.1 1.8E-08 6.1E-13 75.9 17.0 176 7-193 18-215 (273)
58 1ouv_A Conserved hypothetical 99.1 2.8E-08 9.7E-13 74.8 17.8 176 8-194 55-252 (273)
59 4abn_A Tetratricopeptide repea 99.0 9.8E-09 3.4E-13 84.0 15.4 162 30-194 101-288 (474)
60 3nf1_A KLC 1, kinesin light ch 99.0 3.2E-09 1.1E-13 80.8 10.5 162 32-193 28-224 (311)
61 3ulq_A Response regulator aspa 98.9 1.5E-08 5.2E-13 80.2 12.6 187 7-193 155-368 (383)
62 2ooe_A Cleavage stimulation fa 98.9 6E-08 2.1E-12 80.1 15.9 176 13-193 304-492 (530)
63 1qqe_A Vesicular transport pro 98.9 1.1E-07 3.8E-12 72.7 15.2 183 7-189 49-265 (292)
64 2ooe_A Cleavage stimulation fa 98.9 3E-07 1E-11 75.9 18.2 163 30-194 271-455 (530)
65 2h6f_A Protein farnesyltransfe 98.8 1.4E-07 4.6E-12 75.2 15.3 180 7-190 143-344 (382)
66 3q15_A PSP28, response regulat 98.8 8.4E-08 2.9E-12 75.8 13.9 188 5-192 150-364 (378)
67 4a1s_A PINS, partner of inscut 98.8 1.1E-08 3.6E-13 81.4 8.7 187 7-193 98-332 (411)
68 4gyw_A UDP-N-acetylglucosamine 98.8 7.4E-08 2.5E-12 82.7 14.2 150 3-158 16-171 (723)
69 3mv2_B Coatomer subunit epsilo 98.8 1.7E-07 5.8E-12 72.1 14.6 143 50-193 85-240 (310)
70 3ro2_A PINS homolog, G-protein 98.8 1.5E-08 5E-13 77.5 8.4 187 7-193 55-292 (338)
71 3ro2_A PINS homolog, G-protein 98.8 2.4E-08 8.2E-13 76.4 9.4 190 4-193 91-332 (338)
72 3sf4_A G-protein-signaling mod 98.8 2.4E-08 8.2E-13 78.8 9.5 186 7-192 99-335 (406)
73 4a1s_A PINS, partner of inscut 98.8 2.3E-08 7.8E-13 79.4 8.8 190 4-193 134-372 (411)
74 3sf4_A G-protein-signaling mod 98.8 3.2E-08 1.1E-12 78.1 9.5 187 7-193 59-296 (406)
75 3edt_B KLC 2, kinesin light ch 98.8 5.3E-08 1.8E-12 72.8 10.0 153 41-193 11-198 (283)
76 3qky_A Outer membrane assembly 98.8 4.9E-07 1.7E-11 67.6 15.2 162 30-193 14-224 (261)
77 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.9E-07 2.7E-11 64.1 15.7 127 33-164 8-154 (213)
78 2vsy_A XCC0866; transferase, g 98.8 4.3E-07 1.5E-11 75.7 16.2 153 8-164 2-161 (568)
79 3mv2_B Coatomer subunit epsilo 98.7 3.2E-07 1.1E-11 70.6 14.0 162 29-194 98-283 (310)
80 3u3w_A Transcriptional activat 98.7 1E-06 3.4E-11 67.2 16.9 187 6-192 37-265 (293)
81 2pzi_A Probable serine/threoni 98.7 2.6E-07 8.7E-12 78.9 14.7 171 6-179 402-583 (681)
82 1xi4_A Clathrin heavy chain; a 98.7 2.6E-07 8.8E-12 83.1 14.8 162 16-191 1119-1307(1630)
83 4i17_A Hypothetical protein; T 98.7 2.4E-07 8E-12 67.8 12.5 157 7-166 19-215 (228)
84 2r5s_A Uncharacterized protein 98.7 2E-07 6.8E-12 65.7 11.5 159 32-193 7-173 (176)
85 3rjv_A Putative SEL1 repeat pr 98.7 1.9E-06 6.4E-11 62.7 16.9 175 12-197 3-201 (212)
86 1hz4_A MALT regulatory protein 98.7 1.7E-06 5.8E-11 67.9 16.8 186 7-192 105-321 (373)
87 3qou_A Protein YBBN; thioredox 98.7 6E-07 2.1E-11 68.5 13.4 160 30-192 116-283 (287)
88 2yhc_A BAMD, UPF0169 lipoprote 98.7 9.1E-07 3.1E-11 64.8 13.9 162 33-194 6-214 (225)
89 2ifu_A Gamma-SNAP; membrane fu 98.7 1.9E-07 6.5E-12 71.9 10.4 158 33-191 38-222 (307)
90 3urz_A Uncharacterized protein 98.6 4.7E-07 1.6E-11 65.7 11.8 120 72-192 60-185 (208)
91 2qfc_A PLCR protein; TPR, HTH, 98.6 9.2E-07 3.1E-11 67.4 14.0 159 32-190 76-263 (293)
92 3ulq_A Response regulator aspa 98.6 6.1E-07 2.1E-11 70.9 13.1 182 7-188 115-330 (383)
93 2vsy_A XCC0866; transferase, g 98.6 6.4E-07 2.2E-11 74.6 13.8 149 44-194 2-158 (568)
94 1hz4_A MALT regulatory protein 98.6 2.2E-06 7.6E-11 67.2 16.2 187 7-193 65-282 (373)
95 1qqe_A Vesicular transport pro 98.6 1.6E-06 5.6E-11 66.1 14.0 164 4-167 85-276 (292)
96 3qky_A Outer membrane assembly 98.6 1.3E-07 4.5E-12 70.8 7.7 157 7-164 27-228 (261)
97 2e2e_A Formate-dependent nitri 98.6 8.7E-07 3E-11 62.1 11.5 128 41-170 20-154 (177)
98 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.4E-06 1.2E-10 60.7 14.5 122 69-194 9-151 (213)
99 1a17_A Serine/threonine protei 98.6 3.7E-06 1.3E-10 57.7 14.1 123 68-191 15-144 (166)
100 1na0_A Designed protein CTPR3; 98.6 2.7E-06 9.3E-11 55.2 12.5 90 68-158 11-103 (125)
101 3urz_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 63.4 11.3 159 7-169 16-195 (208)
102 2ifu_A Gamma-SNAP; membrane fu 98.5 2.9E-06 1E-10 65.2 14.0 180 7-188 48-256 (307)
103 1na0_A Designed protein CTPR3; 98.5 3.6E-06 1.2E-10 54.6 12.5 110 31-142 9-121 (125)
104 3q15_A PSP28, response regulat 98.5 2.5E-06 8.6E-11 67.3 13.6 182 7-188 113-327 (378)
105 2r5s_A Uncharacterized protein 98.5 6.2E-07 2.1E-11 63.1 9.0 146 7-157 18-169 (176)
106 3gyz_A Chaperone protein IPGC; 98.5 2.6E-06 9E-11 58.8 11.9 99 66-165 36-138 (151)
107 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.7E-11 62.1 10.8 147 43-190 4-173 (203)
108 2vyi_A SGTA protein; chaperone 98.5 3.1E-06 1.1E-10 55.4 11.9 94 32-127 13-106 (131)
109 2pzi_A Probable serine/threoni 98.5 1E-06 3.5E-11 75.2 11.2 149 42-193 402-563 (681)
110 3qou_A Protein YBBN; thioredox 98.5 1.5E-06 5E-11 66.3 10.5 146 7-157 129-280 (287)
111 1a17_A Serine/threonine protei 98.4 5.9E-06 2E-10 56.7 12.6 125 32-158 14-143 (166)
112 4gco_A Protein STI-1; structur 98.4 9.3E-06 3.2E-10 54.0 12.7 95 69-164 16-114 (126)
113 2lni_A Stress-induced-phosphop 98.4 7.2E-06 2.5E-10 54.0 12.1 112 32-145 17-131 (133)
114 2yhc_A BAMD, UPF0169 lipoprote 98.4 4.4E-06 1.5E-10 61.1 11.8 149 7-158 16-210 (225)
115 1xi4_A Clathrin heavy chain; a 98.4 1.7E-05 5.8E-10 71.7 16.6 147 27-190 1101-1247(1630)
116 2lni_A Stress-induced-phosphop 98.4 9.4E-06 3.2E-10 53.4 11.6 100 63-163 13-116 (133)
117 2vyi_A SGTA protein; chaperone 98.4 1.3E-05 4.5E-10 52.3 12.1 116 64-180 10-130 (131)
118 4ga2_A E3 SUMO-protein ligase 98.4 1.1E-06 3.7E-11 60.4 6.9 77 73-150 38-117 (150)
119 2vgx_A Chaperone SYCD; alterna 98.4 2.8E-06 9.6E-11 58.2 9.0 97 66-163 21-121 (148)
120 4e6h_A MRNA 3'-END-processing 98.4 2.5E-05 8.6E-10 66.5 16.5 185 7-194 355-571 (679)
121 4g1t_A Interferon-induced prot 98.4 1E-05 3.5E-10 65.3 13.5 168 32-202 248-469 (472)
122 4ga2_A E3 SUMO-protein ligase 98.3 3.6E-06 1.2E-10 57.8 9.2 136 8-147 10-149 (150)
123 3u3w_A Transcriptional activat 98.3 4E-06 1.4E-10 63.8 10.3 152 7-158 87-263 (293)
124 1p5q_A FKBP52, FK506-binding p 98.3 2E-05 6.9E-10 61.4 14.1 145 45-191 127-292 (336)
125 1elw_A TPR1-domain of HOP; HOP 98.3 2.8E-05 9.7E-10 49.7 12.5 89 69-158 7-98 (118)
126 2kck_A TPR repeat; tetratricop 98.3 7.1E-06 2.4E-10 52.2 9.5 59 34-93 9-67 (112)
127 3rjv_A Putative SEL1 repeat pr 98.3 5.9E-05 2E-09 54.6 15.4 139 48-193 3-158 (212)
128 2kck_A TPR repeat; tetratricop 98.3 8.8E-06 3E-10 51.7 9.8 90 104-193 9-106 (112)
129 1elr_A TPR2A-domain of HOP; HO 98.3 7.9E-06 2.7E-10 53.5 9.8 96 69-165 7-113 (131)
130 4g1t_A Interferon-induced prot 98.3 4.7E-05 1.6E-09 61.4 16.2 186 7-193 63-276 (472)
131 3upv_A Heat shock protein STI1 98.3 2E-05 6.7E-10 51.9 11.7 90 68-158 6-98 (126)
132 1p5q_A FKBP52, FK506-binding p 98.3 1.4E-05 4.8E-10 62.3 11.9 128 30-158 146-291 (336)
133 3gyz_A Chaperone protein IPGC; 98.3 2.2E-05 7.4E-10 54.1 11.6 95 100-194 35-134 (151)
134 2xm6_A Protein corresponding t 98.2 0.00037 1.3E-08 56.8 20.6 109 44-158 164-285 (490)
135 3ro3_A PINS homolog, G-protein 98.2 1E-05 3.5E-10 54.8 9.6 125 68-192 11-157 (164)
136 2e2e_A Formate-dependent nitri 98.2 2.3E-05 7.7E-10 54.8 11.6 117 7-127 22-141 (177)
137 2xcb_A PCRH, regulatory protei 98.2 1.5E-05 5.2E-10 53.8 10.3 97 67-164 19-119 (142)
138 3q49_B STIP1 homology and U bo 98.2 7.9E-05 2.7E-09 49.4 13.6 93 65-158 8-103 (137)
139 2c2l_A CHIP, carboxy terminus 98.2 1.5E-05 5.2E-10 60.5 11.0 181 7-193 16-199 (281)
140 3gw4_A Uncharacterized protein 98.2 1.6E-05 5.4E-10 56.5 10.3 129 30-158 25-173 (203)
141 2xm6_A Protein corresponding t 98.2 0.00029 1E-08 57.4 19.0 89 32-126 76-176 (490)
142 3sz7_A HSC70 cochaperone (SGT) 98.2 6.9E-05 2.4E-09 51.7 13.0 99 65-164 10-112 (164)
143 4b4t_Q 26S proteasome regulato 98.2 3.7E-05 1.3E-09 61.3 13.1 186 7-192 16-244 (434)
144 4gco_A Protein STI-1; structur 98.1 7.1E-05 2.4E-09 49.6 11.9 94 32-127 14-107 (126)
145 4gcn_A Protein STI-1; structur 98.1 1.7E-05 5.9E-10 52.7 8.8 58 69-127 11-68 (127)
146 2vgx_A Chaperone SYCD; alterna 98.1 9.2E-06 3.1E-10 55.6 7.6 94 100-193 20-118 (148)
147 2dba_A Smooth muscle cell asso 98.1 0.00011 3.9E-09 49.0 13.0 93 32-127 29-125 (148)
148 1elw_A TPR1-domain of HOP; HOP 98.1 9E-05 3.1E-09 47.3 11.9 96 31-128 4-99 (118)
149 2fbn_A 70 kDa peptidylprolyl i 98.1 7E-06 2.4E-10 58.7 6.9 153 40-193 13-186 (198)
150 2qfc_A PLCR protein; TPR, HTH, 98.1 2.5E-05 8.6E-10 59.4 10.1 152 7-158 87-263 (293)
151 1elr_A TPR2A-domain of HOP; HO 98.1 3.1E-05 1E-09 50.5 9.2 107 32-139 5-119 (131)
152 2dba_A Smooth muscle cell asso 98.1 0.00011 3.8E-09 49.1 12.0 100 64-165 26-133 (148)
153 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.3E-10 53.9 7.7 127 32-158 10-155 (164)
154 4f3v_A ESX-1 secretion system 98.1 0.00012 3.9E-09 55.7 13.0 190 8-205 19-247 (282)
155 3k9i_A BH0479 protein; putativ 98.0 2.4E-05 8.2E-10 50.9 7.9 83 44-127 3-87 (117)
156 4gcn_A Protein STI-1; structur 98.0 7.1E-05 2.4E-09 49.6 10.3 90 103-192 10-111 (127)
157 3upv_A Heat shock protein STI1 98.0 6.1E-05 2.1E-09 49.4 9.9 95 100-194 3-102 (126)
158 3q49_B STIP1 homology and U bo 98.0 0.00011 3.8E-09 48.6 11.0 96 98-193 6-106 (137)
159 3sz7_A HSC70 cochaperone (SGT) 98.0 6E-05 2.1E-09 52.0 9.9 96 99-194 9-109 (164)
160 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00011 3.8E-09 52.3 11.5 126 32-158 39-183 (198)
161 3n71_A Histone lysine methyltr 98.0 6.3E-05 2.2E-09 61.7 11.0 118 76-193 319-464 (490)
162 4b4t_Q 26S proteasome regulato 98.0 0.00016 5.6E-09 57.5 13.1 155 39-193 12-204 (434)
163 3k9i_A BH0479 protein; putativ 98.0 1.6E-05 5.4E-10 51.9 5.9 81 78-158 2-87 (117)
164 1wao_1 Serine/threonine protei 98.0 8E-05 2.7E-09 60.9 11.2 115 7-125 18-134 (477)
165 2xcb_A PCRH, regulatory protei 98.0 8.4E-05 2.9E-09 50.1 9.6 94 32-127 19-112 (142)
166 1hxi_A PEX5, peroxisome target 98.0 8.9E-05 3E-09 48.7 9.5 83 75-158 26-111 (121)
167 3e4b_A ALGK; tetratricopeptide 98.0 0.002 6.8E-08 52.1 19.3 159 29-194 174-352 (452)
168 4e6h_A MRNA 3'-END-processing 97.9 0.00013 4.4E-09 62.3 11.5 167 7-175 390-585 (679)
169 2if4_A ATFKBP42; FKBP-like, al 97.9 7.3E-05 2.5E-09 58.3 9.4 143 32-193 180-328 (338)
170 1wao_1 Serine/threonine protei 97.9 7.5E-05 2.6E-09 61.1 9.6 119 38-158 13-136 (477)
171 2xev_A YBGF; tetratricopeptide 97.9 0.00043 1.5E-08 45.2 11.6 82 76-158 12-102 (129)
172 3rkv_A Putative peptidylprolyl 97.9 0.00029 1E-08 48.3 11.1 96 70-165 15-131 (162)
173 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00033 1.1E-08 56.9 12.9 119 66-184 268-405 (457)
174 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00022 7.6E-09 57.9 11.4 125 31-158 268-412 (457)
175 3e4b_A ALGK; tetratricopeptide 97.8 0.0014 4.9E-08 53.0 15.9 159 30-191 140-314 (452)
176 4f3v_A ESX-1 secretion system 97.8 0.00023 7.9E-09 54.0 10.3 125 36-163 107-240 (282)
177 2xev_A YBGF; tetratricopeptide 97.8 0.00033 1.1E-08 45.7 9.8 91 34-127 5-102 (129)
178 3dra_A Protein farnesyltransfe 97.8 0.0035 1.2E-07 48.2 16.7 179 10-192 84-286 (306)
179 1ihg_A Cyclophilin 40; ppiase 97.8 0.00034 1.2E-08 55.2 11.4 117 68-184 225-361 (370)
180 2c2l_A CHIP, carboxy terminus 97.7 0.00072 2.5E-08 51.1 12.6 96 30-127 3-98 (281)
181 1hxi_A PEX5, peroxisome target 97.7 0.00032 1.1E-08 46.0 8.8 95 32-128 18-112 (121)
182 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00055 1.9E-08 53.3 10.8 60 134-193 232-293 (338)
183 2l6j_A TPR repeat-containing p 97.6 0.00015 5.3E-09 45.9 6.0 60 67-127 5-64 (111)
184 3n71_A Histone lysine methyltr 97.5 0.00024 8.1E-09 58.3 7.8 119 40-158 318-461 (490)
185 2l6j_A TPR repeat-containing p 97.5 0.00046 1.6E-08 43.7 7.5 86 99-184 2-98 (111)
186 1ihg_A Cyclophilin 40; ppiase 97.5 0.00068 2.3E-08 53.5 9.3 121 32-153 224-362 (370)
187 3rkv_A Putative peptidylprolyl 97.3 0.0024 8.1E-08 43.6 9.6 95 32-127 12-123 (162)
188 2kat_A Uncharacterized protein 97.3 0.002 7E-08 41.2 8.6 76 49-126 3-78 (115)
189 2kat_A Uncharacterized protein 97.2 0.0053 1.8E-07 39.2 10.1 73 85-158 4-79 (115)
190 2hr2_A Hypothetical protein; a 97.2 0.0035 1.2E-07 43.3 9.2 26 34-59 14-39 (159)
191 2hr2_A Hypothetical protein; a 97.2 0.023 7.8E-07 39.2 13.2 90 69-158 14-128 (159)
192 3q7a_A Farnesyltransferase alp 97.2 0.038 1.3E-06 43.2 16.0 178 12-193 106-331 (349)
193 1klx_A Cysteine rich protein B 97.2 0.007 2.4E-07 40.4 10.4 73 47-127 11-87 (138)
194 1na3_A Designed protein CTPR2; 97.1 0.0072 2.5E-07 36.4 9.6 57 69-126 12-68 (91)
195 3dra_A Protein farnesyltransfe 97.1 0.047 1.6E-06 41.9 15.9 154 9-166 124-294 (306)
196 3ma5_A Tetratricopeptide repea 97.1 0.0024 8.2E-08 40.0 7.2 57 101-157 7-66 (100)
197 3qww_A SET and MYND domain-con 97.0 0.0015 5.2E-08 52.7 6.8 88 113-200 310-421 (433)
198 3ma5_A Tetratricopeptide repea 97.0 0.0064 2.2E-07 38.0 8.3 61 66-127 7-67 (100)
199 2uy1_A Cleavage stimulation fa 96.9 0.072 2.5E-06 43.6 16.4 155 31-192 213-412 (493)
200 1na3_A Designed protein CTPR2; 96.9 0.011 3.7E-07 35.5 8.8 82 31-114 9-90 (91)
201 3qwp_A SET and MYND domain-con 96.9 0.0031 1E-07 50.9 7.7 94 106-199 292-409 (429)
202 3qww_A SET and MYND domain-con 96.9 0.0065 2.2E-07 49.0 9.6 81 78-158 310-408 (433)
203 1klx_A Cysteine rich protein B 96.8 0.023 7.7E-07 37.9 10.3 111 79-195 8-128 (138)
204 3dss_A Geranylgeranyl transfer 96.8 0.083 2.9E-06 40.9 14.6 176 14-193 93-304 (331)
205 1zu2_A Mitochondrial import re 96.7 0.0029 9.9E-08 43.6 5.4 111 77-194 13-148 (158)
206 3qwp_A SET and MYND domain-con 96.7 0.014 4.7E-07 47.0 9.8 86 73-158 294-397 (429)
207 2uy1_A Cleavage stimulation fa 96.6 0.042 1.4E-06 45.0 12.4 122 32-158 287-410 (493)
208 2kc7_A BFR218_protein; tetratr 96.4 0.0031 1.1E-07 39.0 3.7 51 76-127 10-61 (99)
209 3ly7_A Transcriptional activat 96.4 0.12 4.2E-06 40.6 13.3 142 27-170 190-349 (372)
210 3mkq_A Coatomer beta'-subunit; 96.2 0.091 3.1E-06 45.1 13.0 103 39-158 660-762 (814)
211 1dce_A Protein (RAB geranylger 96.2 0.11 3.6E-06 43.4 12.9 146 32-179 64-241 (567)
212 3ly7_A Transcriptional activat 96.1 0.12 4.1E-06 40.6 12.0 137 62-202 190-346 (372)
213 1wy6_A Hypothetical protein ST 96.1 0.16 5.6E-06 34.0 12.4 81 115-196 75-157 (172)
214 2y69_E Cytochrome C oxidase su 95.8 0.23 7.9E-06 33.0 10.1 60 49-109 71-130 (152)
215 1v54_E Cytochrome C oxidase po 95.6 0.22 7.6E-06 31.3 9.9 60 49-109 28-87 (109)
216 3mkq_A Coatomer beta'-subunit; 95.5 0.061 2.1E-06 46.2 8.8 77 35-129 633-709 (814)
217 1dce_A Protein (RAB geranylger 95.5 0.92 3.1E-05 37.8 18.0 147 44-193 42-221 (567)
218 2kc7_A BFR218_protein; tetratr 95.2 0.08 2.7E-06 32.3 6.7 80 38-127 7-87 (99)
219 3mkq_B Coatomer subunit alpha; 95.2 0.42 1.4E-05 33.4 10.7 128 40-190 14-141 (177)
220 3bee_A Putative YFRE protein; 94.9 0.22 7.5E-06 30.7 7.9 64 100-163 5-75 (93)
221 1zu2_A Mitochondrial import re 94.7 0.076 2.6E-06 36.5 5.8 58 82-140 62-132 (158)
222 1wy6_A Hypothetical protein ST 94.3 0.2 6.9E-06 33.6 6.7 66 31-97 91-156 (172)
223 1pc2_A Mitochondria fission pr 94.3 0.26 8.8E-06 33.6 7.5 62 65-127 31-97 (152)
224 4gns_B Protein CSD3, chitin bi 94.2 0.51 1.8E-05 40.7 10.9 122 35-158 252-397 (754)
225 2v5f_A Prolyl 4-hydroxylase su 94.1 0.52 1.8E-05 29.4 8.5 61 67-127 6-72 (104)
226 1pc2_A Mitochondria fission pr 94.1 0.33 1.1E-05 33.0 7.8 86 79-165 11-105 (152)
227 3q7a_A Farnesyltransferase alp 94.0 1.7 5.8E-05 33.9 15.3 152 39-193 62-237 (349)
228 4b4t_P 26S proteasome regulato 93.9 0.81 2.8E-05 36.9 11.1 53 6-58 27-83 (445)
229 2ff4_A Probable regulatory pro 93.7 0.33 1.1E-05 38.4 8.3 64 105-168 175-249 (388)
230 3lvg_A Clathrin heavy chain 1; 93.4 0.00012 4.2E-09 59.3 -11.7 154 25-189 77-254 (624)
231 2v5f_A Prolyl 4-hydroxylase su 93.3 0.62 2.1E-05 29.0 7.7 66 31-96 5-76 (104)
232 2ff4_A Probable regulatory pro 92.4 0.52 1.8E-05 37.2 7.8 69 134-202 173-248 (388)
233 4gns_B Protein CSD3, chitin bi 92.0 1.4 4.8E-05 38.1 10.2 123 68-190 250-397 (754)
234 3mkq_B Coatomer subunit alpha; 91.5 2.6 8.7E-05 29.4 10.9 110 29-158 32-141 (177)
235 3u64_A Protein TP_0956; tetrat 91.4 0.51 1.7E-05 35.8 6.2 76 32-107 200-283 (301)
236 3u64_A Protein TP_0956; tetrat 91.1 1.5 5E-05 33.4 8.5 105 100-204 153-282 (301)
237 3bee_A Putative YFRE protein; 91.1 1.7 5.6E-05 26.6 9.5 45 82-127 25-69 (93)
238 1v54_E Cytochrome C oxidase po 90.2 2.3 7.9E-05 26.7 8.9 75 67-141 10-88 (109)
239 4h7y_A Dual specificity protei 89.8 3.4 0.00012 28.1 9.8 95 30-126 12-119 (161)
240 4h7y_A Dual specificity protei 89.7 2 6.7E-05 29.3 7.3 64 44-109 73-136 (161)
241 1wgl_A TOLL-interacting protei 89.3 0.85 2.9E-05 25.5 4.5 56 7-65 2-57 (59)
242 3dss_A Geranylgeranyl transfer 88.8 6.7 0.00023 30.2 18.3 159 32-193 27-222 (331)
243 1k1a_A B-cell lymphoma 3-encod 88.1 0.92 3.1E-05 32.4 5.4 87 107-199 119-211 (241)
244 1nzn_A CGI-135 protein, fissio 87.9 4.1 0.00014 26.6 9.1 89 75-164 10-107 (126)
245 2y69_E Cytochrome C oxidase su 87.2 4.9 0.00017 26.7 8.9 78 64-141 50-131 (152)
246 1nzn_A CGI-135 protein, fissio 86.7 2.2 7.6E-05 27.9 6.0 76 50-127 20-100 (126)
247 4b4t_R RPN7, 26S proteasome re 86.2 11 0.00039 29.9 11.7 114 12-127 107-234 (429)
248 2uwj_G Type III export protein 85.4 5 0.00017 25.1 8.6 74 81-158 21-94 (115)
249 2p58_C Putative type III secre 85.2 5.2 0.00018 25.1 8.9 75 80-158 21-95 (116)
250 2nsz_A Programmed cell death p 81.3 2.8 9.5E-05 27.5 4.7 95 103-197 9-115 (129)
251 2uwj_G Type III export protein 81.0 8 0.00027 24.2 7.8 60 139-202 46-105 (115)
252 2zu6_B Programmed cell death p 81.0 16 0.00055 27.8 10.8 69 134-203 168-241 (307)
253 3hra_A Ankyrin repeat family p 80.9 4.7 0.00016 27.7 6.2 153 41-199 12-173 (201)
254 2p58_C Putative type III secre 80.2 8.6 0.00029 24.1 8.0 59 139-201 47-105 (116)
255 3eiq_C Programmed cell death p 79.2 21 0.0007 27.9 9.9 71 134-205 219-294 (358)
256 1y8m_A FIS1; mitochondria, unk 78.3 11 0.00039 25.1 6.9 48 80-127 56-103 (144)
257 1wdy_A 2-5A-dependent ribonucl 78.2 3.7 0.00013 29.8 5.2 154 37-199 42-214 (285)
258 2p1h_A APAF-1, apoptotic prote 78.0 9.2 0.00031 23.2 7.2 65 85-153 24-88 (94)
259 2ion_A PDCD4, programmed cell 77.6 4.1 0.00014 27.6 4.8 94 103-196 11-116 (152)
260 3o48_A Mitochondria fission 1 77.4 8.8 0.0003 25.3 6.1 47 81-127 58-104 (134)
261 4fhn_B Nucleoporin NUP120; pro 77.3 27 0.00093 31.7 11.3 154 39-193 850-1050(1139)
262 2d2s_A Exocyst complex compone 76.8 13 0.00045 27.1 7.6 88 37-127 24-117 (235)
263 4g8k_A 2-5A-dependent ribonucl 76.4 13 0.00043 28.1 7.9 107 85-200 218-330 (337)
264 3ygs_P Procaspase 9; apoptosis 75.6 4.4 0.00015 25.0 4.2 38 115-152 51-88 (97)
265 3jxi_A Vanilloid receptor-rela 75.2 7.4 0.00025 28.0 6.1 161 37-197 8-211 (260)
266 3esl_A Checkpoint serine/threo 75.1 19 0.00064 25.6 7.7 68 62-129 73-143 (202)
267 4b4t_R RPN7, 26S proteasome re 75.0 27 0.00091 27.8 9.7 56 103-158 133-194 (429)
268 2r9g_A AAA ATPase, central reg 74.0 21 0.00072 25.3 8.4 82 34-116 14-103 (204)
269 2fu4_A Ferric uptake regulatio 70.5 13 0.00046 21.6 6.3 62 55-117 6-68 (83)
270 2pnn_A Transient receptor pote 69.9 24 0.00084 25.4 7.9 167 29-197 9-219 (273)
271 2fe3_A Peroxide operon regulat 69.1 22 0.00075 23.5 7.0 62 55-117 11-72 (145)
272 1wdy_A 2-5A-dependent ribonucl 69.0 8.5 0.00029 27.8 5.2 113 36-157 7-127 (285)
273 3lpz_A GET4 (YOR164C homolog); 68.9 38 0.0013 26.1 15.8 21 169-190 193-213 (336)
274 3bge_A Predicted ATPase; struc 68.8 28 0.00096 24.6 7.5 79 36-114 9-95 (201)
275 4fhn_B Nucleoporin NUP120; pro 67.4 70 0.0024 29.1 11.5 115 72-191 818-965 (1139)
276 3ctd_A Putative ATPase, AAA fa 65.7 34 0.0012 24.4 8.2 83 32-114 33-123 (213)
277 3lvg_A Clathrin heavy chain 1; 65.2 0.11 3.8E-06 42.5 -6.1 145 29-184 52-219 (624)
278 2etb_A Transient receptor pote 64.7 2.4 8.3E-05 30.6 1.4 22 41-62 9-30 (256)
279 2b7e_A PRE-mRNA processing pro 64.7 5.6 0.00019 22.1 2.5 29 83-111 3-31 (59)
280 3jxi_A Vanilloid receptor-rela 64.2 8.1 0.00028 27.8 4.2 183 4-193 11-251 (260)
281 2w57_A Ferric uptake regulatio 64.1 28 0.00097 23.1 6.6 63 55-118 6-69 (150)
282 1mzb_A Ferric uptake regulatio 63.7 23 0.00078 23.1 6.0 60 57-117 9-69 (136)
283 4a1g_A Mitotic checkpoint seri 63.5 31 0.0011 23.2 6.9 75 62-139 64-139 (152)
284 3eu9_A Huntingtin-interacting 63.3 7.3 0.00025 27.3 3.8 150 37-199 45-205 (240)
285 2rfa_A Transient receptor pote 63.3 21 0.00071 25.0 6.2 150 38-197 7-184 (232)
286 1zbp_A Hypothetical protein VP 63.3 17 0.00059 27.1 5.7 113 73-193 4-129 (273)
287 3kea_A K1L; tropism, ANK repea 62.9 18 0.00061 26.7 5.9 22 106-127 131-152 (285)
288 3txn_A 26S proteasome regulato 62.1 57 0.0019 25.8 13.4 158 32-190 20-207 (394)
289 2xig_A Ferric uptake regulatio 61.7 27 0.00093 23.2 6.1 61 56-117 17-77 (150)
290 2etb_A Transient receptor pote 60.7 15 0.00053 26.2 5.2 28 32-59 42-71 (256)
291 3ffl_A Anaphase-promoting comp 60.7 38 0.0013 23.2 9.9 21 138-158 128-148 (167)
292 3aji_A 26S proteasome non-ATPa 60.1 7.4 0.00025 27.3 3.3 153 30-199 37-200 (231)
293 2o03_A Probable zinc uptake re 59.8 24 0.00083 22.8 5.5 43 38-80 17-59 (131)
294 1y8m_A FIS1; mitochondria, unk 59.4 36 0.0012 22.7 8.6 83 14-96 18-107 (144)
295 3twr_A Tankyrase-2; ankyrin re 58.9 17 0.00057 23.9 4.8 111 39-157 13-130 (165)
296 3twr_A Tankyrase-2; ankyrin re 58.7 15 0.00052 24.1 4.5 118 72-199 11-136 (165)
297 3mwm_A ZUR, putative metal upt 58.5 23 0.00078 23.2 5.2 43 38-80 20-62 (139)
298 3eyy_A Putative iron uptake re 57.5 27 0.00092 23.1 5.5 61 55-117 8-68 (145)
299 3qye_A TBC1 domain family memb 57.4 61 0.0021 24.6 10.4 142 32-177 150-307 (331)
300 2nsz_A Programmed cell death p 56.8 37 0.0013 22.0 5.9 65 33-98 9-75 (129)
301 3kea_A K1L; tropism, ANK repea 56.2 19 0.00064 26.5 5.1 148 30-188 28-182 (285)
302 1zbp_A Hypothetical protein VP 55.9 54 0.0018 24.5 7.2 113 39-158 5-126 (273)
303 1mzb_A Ferric uptake regulatio 55.4 32 0.0011 22.4 5.5 47 36-82 22-69 (136)
304 3ygs_P Procaspase 9; apoptosis 54.9 34 0.0011 20.9 5.9 66 52-123 25-90 (97)
305 4a1g_A Mitotic checkpoint seri 54.6 46 0.0016 22.4 7.0 55 47-101 81-136 (152)
306 4ets_A Ferric uptake regulatio 53.9 48 0.0016 22.4 6.5 58 58-116 25-84 (162)
307 2fe3_A Peroxide operon regulat 52.8 35 0.0012 22.5 5.4 67 15-82 6-72 (145)
308 1k1a_A B-cell lymphoma 3-encod 52.6 31 0.0011 24.1 5.6 152 37-199 12-178 (241)
309 3ffl_A Anaphase-promoting comp 52.2 54 0.0018 22.5 7.6 97 33-129 22-150 (167)
310 3v31_A Ankyrin repeat family A 51.8 37 0.0013 22.2 5.6 110 77-192 44-160 (167)
311 2wvi_A Mitotic checkpoint seri 51.6 54 0.0019 22.3 8.5 61 64-127 61-122 (164)
312 3aji_A 26S proteasome non-ATPa 51.5 57 0.0019 22.5 7.1 19 38-56 10-28 (231)
313 2ion_A PDCD4, programmed cell 51.5 47 0.0016 22.2 5.9 65 33-98 11-77 (152)
314 1lsh_A Lipovitellin (LV-1N, LV 50.5 1.4E+02 0.0049 26.9 15.1 153 36-190 344-520 (1056)
315 2wpv_A GET4, UPF0363 protein Y 50.4 81 0.0028 24.0 13.9 16 176-191 200-215 (312)
316 1u60_A Probable glutaminase YB 49.5 56 0.0019 24.9 6.5 20 20-39 84-103 (310)
317 4b4t_P 26S proteasome regulato 48.8 1E+02 0.0034 24.6 13.8 146 45-192 30-205 (445)
318 1oai_A Nuclear RNA export fact 48.6 6.6 0.00023 21.8 1.1 25 43-67 32-57 (59)
319 3v30_A DNA-binding protein rfx 48.3 29 0.00098 22.9 4.6 145 39-191 7-159 (172)
320 3e3v_A Regulatory protein RECX 48.2 56 0.0019 22.4 6.1 50 49-99 51-100 (177)
321 2xig_A Ferric uptake regulatio 48.1 34 0.0012 22.7 4.8 47 36-82 31-77 (150)
322 2qq8_A TBC1 domain family memb 47.9 48 0.0016 25.3 6.2 120 35-158 158-292 (334)
323 1ug3_A EIF4GI, eukaryotic prot 46.5 25 0.00084 27.1 4.4 95 103-197 13-118 (339)
324 3ljn_A Hypothetical protein; a 46.5 23 0.00078 26.9 4.3 38 89-126 69-106 (364)
325 2keb_A DNA polymerase subunit 46.4 50 0.0017 20.4 6.0 60 48-107 26-88 (101)
326 4aez_C MAD3, mitotic spindle c 46.2 79 0.0027 22.8 6.6 112 28-142 68-191 (223)
327 2yru_A Steroid receptor RNA ac 45.6 31 0.0011 22.1 4.0 42 53-94 48-89 (118)
328 3eyy_A Putative iron uptake re 45.4 42 0.0015 22.1 4.9 62 19-82 7-68 (145)
329 3esl_A Checkpoint serine/threo 45.4 79 0.0027 22.4 8.5 85 16-101 58-150 (202)
330 3ljn_A Hypothetical protein; a 45.3 29 0.00098 26.3 4.7 85 72-157 87-195 (364)
331 2w57_A Ferric uptake regulatio 45.3 40 0.0014 22.4 4.8 48 36-83 21-69 (150)
332 2fu4_A Ferric uptake regulatio 44.5 44 0.0015 19.2 4.9 48 35-82 20-68 (83)
333 1jog_A Hypothetical protein HI 44.1 10 0.00036 25.3 1.7 20 66-85 77-96 (146)
334 1ug3_A EIF4GI, eukaryotic prot 44.0 1.1E+02 0.0036 23.5 7.6 140 33-173 13-187 (339)
335 1qsa_A Protein (soluble lytic 43.7 1.5E+02 0.005 25.0 12.3 111 81-192 229-347 (618)
336 2qfz_A TBC1 domain family memb 43.4 1.1E+02 0.0037 23.4 8.3 107 48-158 189-312 (345)
337 2rg8_A Programmed cell death p 43.3 36 0.0012 23.2 4.3 56 103-158 12-71 (165)
338 3eu9_A Huntingtin-interacting 43.1 38 0.0013 23.4 4.8 145 40-198 15-170 (240)
339 3mwm_A ZUR, putative metal upt 43.0 28 0.00094 22.8 3.7 45 72-116 19-63 (139)
340 2o03_A Probable zinc uptake re 42.5 35 0.0012 21.9 4.1 44 73-116 17-60 (131)
341 3qil_A Clathrin heavy chain 1; 42.1 24 0.00081 22.8 3.0 71 42-124 17-87 (125)
342 1bd8_A P19INK4D CDK4/6 inhibit 41.7 15 0.00052 23.8 2.3 112 38-157 6-123 (156)
343 2f8y_A Notch homolog 1, transl 41.5 49 0.0017 22.7 5.1 88 106-200 127-220 (223)
344 2p1h_A APAF-1, apoptotic prote 41.4 56 0.0019 19.5 6.8 67 50-124 24-90 (94)
345 2aja_A Ankyrin repeat family p 40.9 1.2E+02 0.0042 23.4 8.6 77 105-187 164-245 (376)
346 2ijq_A Hypothetical protein; s 40.7 83 0.0028 21.3 7.1 58 69-127 36-101 (161)
347 2pby_A Glutaminase; secsg, rik 40.7 1E+02 0.0034 23.5 6.7 20 20-39 83-102 (308)
348 3f3f_C Nucleoporin NUP85; stru 40.7 1.6E+02 0.0054 24.6 9.7 90 29-120 477-568 (570)
349 3b7b_A Euchromatic histone-lys 40.6 55 0.0019 22.7 5.3 21 107-127 114-134 (237)
350 3l6a_A Eukaryotic translation 40.6 32 0.0011 26.8 4.2 56 103-158 14-74 (364)
351 2qx5_A Nucleoporin NIC96; mRNA 40.5 1E+02 0.0034 26.3 7.4 32 131-162 532-568 (661)
352 2wpv_A GET4, UPF0363 protein Y 40.4 1.2E+02 0.0041 23.0 15.3 98 54-151 80-187 (312)
353 2cos_A Serine/threonine protei 40.0 45 0.0015 18.0 3.9 14 117-130 38-51 (54)
354 2dzn_A Probable 26S proteasome 39.7 40 0.0014 23.3 4.4 168 16-199 16-203 (228)
355 3f6q_A Integrin-linked protein 39.3 74 0.0025 21.0 5.6 149 40-200 11-167 (179)
356 1fkm_A Protein (GYP1P), ORF YO 39.1 1.2E+02 0.0043 23.7 7.5 41 87-127 217-257 (396)
357 3ltj_A Alpharep-4; protein eng 38.2 91 0.0031 21.0 18.1 166 16-192 14-179 (201)
358 3f3f_C Nucleoporin NUP85; stru 37.8 70 0.0024 26.7 5.9 59 125-184 509-569 (570)
359 4ets_A Ferric uptake regulatio 37.3 93 0.0032 20.9 6.4 70 13-83 15-86 (162)
360 2ko4_A Mediator of RNA polymer 37.3 62 0.0021 19.1 4.0 34 153-186 24-58 (81)
361 2zu6_B Programmed cell death p 36.3 1.4E+02 0.0047 22.6 8.2 64 103-166 168-239 (307)
362 3r88_A Anthranilate phosphorib 35.8 1E+02 0.0035 24.1 6.4 66 131-196 22-91 (377)
363 3ltm_A Alpha-REP4; protein eng 35.8 1E+02 0.0035 21.0 17.7 164 18-192 21-184 (211)
364 2wvi_A Mitotic checkpoint seri 35.6 1E+02 0.0035 20.9 7.3 54 48-101 77-131 (164)
365 1otr_A Protein CUE2; protein-p 34.6 53 0.0018 17.3 4.6 40 16-58 6-45 (49)
366 2es9_A Putative cytoplasmic pr 33.7 47 0.0016 20.2 3.2 50 148-197 13-68 (115)
367 4gpm_A Engineered protein OR26 33.7 72 0.0025 21.3 4.8 143 37-196 8-161 (169)
368 3qil_A Clathrin heavy chain 1; 33.4 42 0.0014 21.7 3.1 54 32-88 33-86 (125)
369 3no6_A Transcriptional activat 33.3 1.1E+02 0.0037 22.3 5.9 48 30-77 128-187 (248)
370 4b93_B Ankyrin repeat domain-c 33.1 33 0.0011 25.1 3.1 136 53-199 68-213 (269)
371 2jul_A Calsenilin; EF-hand, ca 32.9 1.3E+02 0.0046 21.4 9.4 126 64-189 109-254 (256)
372 3hzj_A Rabgap1L, RAB GTPase-ac 31.6 1.1E+02 0.0038 22.9 5.9 137 33-174 117-271 (310)
373 2d2s_A Exocyst complex compone 31.5 1.5E+02 0.005 21.4 10.1 85 7-94 30-119 (235)
374 3ibx_A TENA, HP1287, putative 31.2 81 0.0028 22.3 4.8 21 30-50 112-132 (221)
375 2y1l_E Darpin-8.4; hydrolase-i 30.8 1.1E+02 0.0038 19.9 5.5 117 35-162 15-139 (169)
376 1awc_B Protein (GA binding pro 30.7 94 0.0032 19.8 4.9 19 108-126 71-89 (153)
377 3us6_A Histidine-containing ph 30.6 1.2E+02 0.0041 20.2 10.1 108 34-158 10-119 (153)
378 1n11_A Ankyrin; clathrin, BAND 30.5 92 0.0031 24.2 5.5 116 73-199 84-207 (437)
379 2pnn_A Transient receptor pote 30.5 65 0.0022 23.1 4.4 91 30-125 51-169 (273)
380 3bqo_A Telomeric repeat-bindin 30.3 1.5E+02 0.005 21.1 9.2 20 139-158 124-143 (211)
381 2ijq_A Hypothetical protein; s 29.9 1.3E+02 0.0045 20.4 6.7 61 33-94 35-103 (161)
382 1bpo_A Protein (clathrin); cla 29.5 2.2E+02 0.0075 23.2 7.3 92 33-126 363-454 (494)
383 4fn6_A Thiaminase-2, thiaminas 29.5 1.5E+02 0.0052 21.0 6.3 21 30-50 109-130 (229)
384 1y1x_A Leishmania major homolo 29.2 1.3E+02 0.0045 20.2 7.3 28 148-175 128-156 (191)
385 3cqc_A Nuclear pore complex pr 29.1 50 0.0017 24.5 3.4 27 103-129 36-62 (270)
386 2fo1_E LIN-12 protein; beta-ba 29.0 69 0.0024 24.5 4.5 118 36-157 127-260 (373)
387 3crd_A Raidd; caspase recruitm 28.5 79 0.0027 19.2 3.8 32 113-144 47-78 (100)
388 3utm_A Tankyrase-1; tankyrase, 28.3 84 0.0029 23.2 4.8 117 37-162 27-150 (351)
389 1dm5_A Annexin XII E105K mutan 28.3 1.9E+02 0.0066 21.8 9.4 92 32-128 72-181 (315)
390 2i7a_A Calpain 13; calcium-dep 28.0 52 0.0018 22.2 3.2 38 118-158 115-153 (174)
391 2yru_A Steroid receptor RNA ac 27.9 1.2E+02 0.0041 19.3 5.9 35 159-193 56-90 (118)
392 4hbd_A KN motif and ankyrin re 27.9 68 0.0023 23.3 4.1 154 29-189 107-272 (276)
393 1z5h_A Tricorn protease intera 27.6 3E+02 0.01 23.8 12.2 26 133-158 650-675 (780)
394 3eiq_C Programmed cell death p 27.6 1.4E+02 0.0049 23.1 5.9 26 34-59 220-245 (358)
395 1oxz_A ADP-ribosylation factor 27.4 81 0.0028 22.0 4.1 57 88-144 37-97 (186)
396 4b4t_S RPN3, 26S proteasome re 27.3 2E+02 0.0067 23.7 6.8 57 101-157 231-295 (523)
397 1s6c_A KV4 potassium channel-i 27.1 1.4E+02 0.0047 19.7 10.7 40 149-188 140-180 (183)
398 3e3v_A Regulatory protein RECX 26.9 1.5E+02 0.0052 20.2 9.6 117 8-127 45-163 (177)
399 3l6a_A Eukaryotic translation 26.8 2.2E+02 0.0076 22.0 8.9 27 67-93 13-39 (364)
400 3t8k_A Uncharacterized protein 26.7 1.3E+02 0.0045 20.3 5.2 92 110-201 12-111 (186)
401 3ltj_A Alpharep-4; protein eng 26.5 1.5E+02 0.0051 19.9 12.7 120 29-157 57-176 (201)
402 2bn5_A PSI; nuclear protein, s 26.4 57 0.002 15.5 2.1 22 72-93 8-29 (33)
403 2rg8_A Programmed cell death p 26.2 76 0.0026 21.5 3.7 28 33-60 12-39 (165)
404 1ikn_D Protein (I-kappa-B-alph 25.9 5.9 0.0002 28.1 -2.1 137 51-197 58-210 (236)
405 3m0z_A Putative aldolase; MCSG 25.5 16 0.00056 26.4 0.2 80 48-127 148-244 (249)
406 3d5l_A Regulatory protein RECX 25.4 1.8E+02 0.0063 20.6 8.7 123 33-158 77-206 (221)
407 3ph0_C ASCG; type III secretio 25.1 93 0.0032 17.1 4.0 40 81-121 21-60 (61)
408 4g8k_A 2-5A-dependent ribonucl 24.6 2.1E+02 0.0073 21.0 7.2 123 34-164 203-329 (337)
409 3o48_A Mitochondria fission 1 24.6 1.5E+02 0.0052 19.4 9.0 70 96-165 35-112 (134)
410 4aez_C MAD3, mitotic spindle c 24.4 2E+02 0.0068 20.7 6.7 56 118-174 131-191 (223)
411 1ihb_A P18-INK4C(INK6), cyclin 23.7 45 0.0015 21.5 2.2 113 34-157 5-125 (162)
412 2r9g_A AAA ATPase, central reg 23.7 1.3E+02 0.0044 21.3 4.5 38 77-115 25-62 (204)
413 4f52_E Glomulin; cullin-ring E 23.1 3.3E+02 0.011 22.8 8.1 27 30-56 27-53 (596)
414 2dae_A KIAA0733 protein; mitog 22.6 63 0.0021 18.6 2.2 45 9-56 5-49 (75)
415 2hyv_A Annexin A2; calcium-bin 22.3 2.5E+02 0.0086 21.1 11.5 93 32-127 62-171 (308)
416 3pvs_A Replication-associated 22.3 2.9E+02 0.0098 22.0 7.0 55 44-98 268-327 (447)
417 1z96_A DNA-damage, UBA-domain 22.1 79 0.0027 15.2 3.8 34 149-186 5-38 (40)
418 3re2_A Predicted protein; meni 22.0 3E+02 0.01 21.8 8.8 28 131-158 295-322 (472)
419 1ycs_B 53BP2, P53BP2; ankyrin 21.9 1.2E+02 0.0042 21.2 4.4 113 72-190 40-162 (239)
420 3d9h_A CDNA FLJ77766, highly s 21.9 1.9E+02 0.0065 20.9 5.6 86 106-198 159-249 (285)
421 1uzc_A Hypothetical protein FL 21.7 1E+02 0.0034 17.6 3.1 32 83-114 15-46 (71)
422 1dp3_A TRAM protein; helix-loo 21.5 32 0.0011 18.7 0.8 38 78-115 8-45 (55)
423 1yii_A Annexin A5, annexin V, 21.5 2.7E+02 0.0091 21.0 9.8 58 32-92 74-131 (320)
424 3m6y_A 4-hydroxy-2-oxoglutarat 21.3 18 0.0006 26.6 -0.3 80 48-127 171-267 (275)
425 2dod_A Transcription elongatio 21.0 1.2E+02 0.004 17.9 3.4 34 48-82 17-51 (82)
426 2ii2_A Alpha-11 giardin; helix 20.9 2.7E+02 0.0092 20.9 7.5 119 33-158 64-200 (310)
427 3dfg_A Xcrecx, regulatory prot 20.9 1.9E+02 0.0067 19.3 9.2 117 36-157 36-158 (162)
428 1n00_A Annexin GH1; membrane-b 20.7 2.8E+02 0.0095 21.0 10.5 39 32-72 76-114 (321)
429 2cwb_A Chimera of immunoglobul 20.5 1.7E+02 0.0057 18.4 4.7 40 145-187 63-102 (108)
430 1q2z_A ATP-dependent DNA helic 20.3 82 0.0028 20.1 2.8 50 46-98 42-95 (120)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.5e-40 Score=269.45 Aligned_cols=179 Identities=15% Similarity=0.201 Sum_probs=171.5
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHhccCccH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA---------HQKGLEIHAHVIKYGHLHDI 101 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~~~ 101 (209)
...++.+|++|++.|++++|.++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 356899999999999999999999999999999999999999999987654 78899999999999999999
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhc----CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCHHhHHHHHHHh
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 174 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~~t~~~li~~~ 174 (209)
.|||+||++|++.|++++|.++|++| ..||..+||++|.+|++.|++++|.++|++| |+.||..||++||++|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 3699999999999999999999999999999 9999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCCchhHhHhhhcC
Q 045511 175 SSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDFM 209 (209)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~y 209 (209)
++.|++++|.+++++|++.|..|+..||+.|++.|
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999998753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.4e-35 Score=239.73 Aligned_cols=176 Identities=10% Similarity=0.035 Sum_probs=166.5
Q ss_pred hhcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCC---------ccchHHHHHHhhhCCCCCCHHHHHH
Q 045511 2 FVNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSST---------PQNAIPLYNKMLNCPSSYNHYTFTQ 71 (209)
Q Consensus 2 li~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~l~~~m~~~g~~p~~~t~~~ 71 (209)
+|+++ +.|+.++|.+.+.++.+.. ..||..+||+||.+|++.+. +++|.++|++|.+.|+.||..||++
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 46778 9999999999999998864 67999999999999998776 4679999999999999999999999
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc----CCCcHhHHHHHHHHHHhCCC
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVTWTTIISGLSKCGF 147 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~ 147 (209)
+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++| ..||..+|++||++|++.|+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999 46999999999999999999
Q ss_pred hHHHHHHHhhC---CCCCCHHhHHHHHHHhcccc
Q 045511 148 HKEAIDMFCGI---DVKPNANTLVSVLSACSSLG 178 (209)
Q Consensus 148 ~~~a~~~~~~m---~~~p~~~t~~~li~~~~~~g 178 (209)
+++|.++|++| |+.|+..||+.++..++..+
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999 99999999999999988754
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=8.6e-24 Score=181.64 Aligned_cols=145 Identities=10% Similarity=-0.029 Sum_probs=125.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhh---CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLN---CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
.+||++|++||++|++++|.++|++|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 6899999999999999999999988764 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCh-hhHHHHHHhc----CCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC------HHhHHHHHHHhccc
Q 045511 109 HFYVTVKDI-FSAHQIFNSV----VFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPN------ANTLVSVLSACSSL 177 (209)
Q Consensus 109 ~~~~~~g~~-~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~------~~t~~~li~~~~~~ 177 (209)
+++++.|+. ++|.++|++| ..||..+|++++++..+.+-++.+.++.. +++|+ ..|...|.+.|.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc--ccCCCCCCcccccchHHHHHHHccC
Confidence 999999985 7899999999 46999999999987777655444444433 44544 56777778888865
Q ss_pred c
Q 045511 178 G 178 (209)
Q Consensus 178 g 178 (209)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=3.4e-23 Score=177.98 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHH---HhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc----CCCcHhHHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVI---KYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVTWTTI 138 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l 138 (209)
..||+++|.+||+.|++++|.++|+.|. +.|+.||++|||+||++||+.|++++|.++|++| ..||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467777777777777777777766654 3466677777777777777777777777777666 34667777777
Q ss_pred HHHHHhCCCh-HHHHHHHhhC---CCCCCHHhHHHHHHHhccc
Q 045511 139 ISGLSKCGFH-KEAIDMFCGI---DVKPNANTLVSVLSACSSL 177 (209)
Q Consensus 139 i~~~~~~g~~-~~a~~~~~~m---~~~p~~~t~~~li~~~~~~ 177 (209)
|.++|+.|+. ++|.++|++| |+.||..||+.++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 7777776653 5666677777 6777777776666555433
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.82 E-value=3.9e-19 Score=148.46 Aligned_cols=202 Identities=6% Similarity=-0.106 Sum_probs=147.0
Q ss_pred hcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc
Q 045511 3 VNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81 (209)
Q Consensus 3 i~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 81 (209)
+.++ +.|+.++|.+.+.++.+.. +.+..+|+.++..+.+.|+.++|..+++++.+.. +.+..+|..+...|.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 3444 5666666666666665542 2355667777777777777777777777776432 3467778888888888888
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+++|.++|+.+.+.. +.+..+|+.+..+|.+.|++++|.++|+++. ..+..+|+.+..+|.+.|++++|.++|+++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888887653 3456788888888888888888888888762 346778888888888888888888888888
Q ss_pred -CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh----ccCCC--chhHhHhhhc
Q 045511 159 -DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN----LNENN--IILDNAVLDF 208 (209)
Q Consensus 159 -~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~ 208 (209)
...| +..+|+.+...|.+.|++++|.++|+.+.+. +..|+ ..+|..+..+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 3333 5678888888888888888888888887766 66776 5677776654
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.2e-18 Score=145.56 Aligned_cols=196 Identities=10% Similarity=-0.031 Sum_probs=110.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.+++.+.+.++.+. .+.+..+|+.+...|.+.|++++|.++|+++.+.+ +.+..+|..+...+.+.|++++|.
T Consensus 351 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455555555555555432 12344566666666666666666666666665532 123456666666666666666666
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-----
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI----- 158 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----- 158 (209)
++|+.+.+.+ +.+..+|+.+..+|.+.|++++|.++|+++. ..+..+|+.+...|.+.|++++|.++|+++
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 6666665543 3355566666666666666666666666552 234555666666666666666666666665
Q ss_pred --CCCCC--HHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhh
Q 045511 159 --DVKPN--ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLD 207 (209)
Q Consensus 159 --~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 207 (209)
+..|+ ..+|..+..+|.+.|++++|.++++.+.+.+ ..+..+|..|..
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 23555 4556666666666666666666666655543 224444544433
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=1.1e-12 Score=104.02 Aligned_cols=158 Identities=12% Similarity=0.049 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 113 (209)
+..+-..+.+.|++++|.+.|+++.+.. +-+..+|..+...+.+.|++++|.+.|+.+.+.. +.+...|..+-..+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 3333334444444444444444444321 1123444444444455555555555444444332 1122233333333333
Q ss_pred CCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHH
Q 045511 114 VKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 114 ~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
.|++++|...|++. ...+..++..+...|.+.|++++|.+.|+++ ...|+ ..++..+...+.+.|++++|.+.++
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333333333322 1112344444555555555555555555554 33332 2344444555555555555555555
Q ss_pred HHHHh
Q 045511 189 HSLRN 193 (209)
Q Consensus 189 ~~~~~ 193 (209)
.+.+.
T Consensus 296 ~al~~ 300 (388)
T 1w3b_A 296 TALRL 300 (388)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44433
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=8.3e-13 Score=104.73 Aligned_cols=160 Identities=12% Similarity=0.064 Sum_probs=118.9
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..|..+-..+.+.|++++|...|++..+.. +-+..++..+...+.+.|++++|.+.|+.+.+.. +.+..+|..+...|
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 444445555555555555555555554422 1245777788888888888888888888887754 33566788888888
Q ss_pred HhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHH
Q 045511 112 VTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
.+.|++++|.+.|+++. ..+..+|+.+...+...|++++|...|+++ ...|+ ..++..+...+.+.|++++|.+.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888773 356778888888899999999999999888 55564 56788888888899999999999
Q ss_pred HHHHHHh
Q 045511 187 HAHSLRN 193 (209)
Q Consensus 187 ~~~~~~~ 193 (209)
++.+.+.
T Consensus 362 ~~~a~~~ 368 (388)
T 1w3b_A 362 YKEAIRI 368 (388)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8888764
No 9
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=2.3e-12 Score=95.94 Aligned_cols=198 Identities=11% Similarity=-0.044 Sum_probs=163.1
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
..+ ..++.++|.+.+.++.+.. +.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHH
Confidence 344 7889999999998887763 2356888999999999999999999999998764 23678889999999999999
Q ss_pred HHHHHHHHHHHHhccCc-cHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 83 QKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
++|.+.++...+.+..| +...+..+...|...|++++|.+.+++.. ..+...+..+...+...|++++|...|.+.
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998843344 56788999999999999999999999873 345788999999999999999999999998
Q ss_pred -CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 159 -DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 159 -~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
...| +...+..+...+...|+.++|.+.++.+.+. .|+......++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 5454 5567888888899999999999999998776 45544444443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.52 E-value=5e-13 Score=107.65 Aligned_cols=182 Identities=8% Similarity=0.020 Sum_probs=108.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH----HHHHHHHH--------
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH----YTFTQALK-------- 74 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~ll~-------- 74 (209)
+.++.++|...+.++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ |+. ..+..+..
T Consensus 72 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 72 AMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555554432 1233556666666666666666666666665532 332 33333322
Q ss_pred ----HHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCC
Q 045511 75 ----ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGF 147 (209)
Q Consensus 75 ----~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~ 147 (209)
.+.+.|++++|.+.|+.+.+.. +.+..++..+..+|.+.|++++|.++|+++. ..+..+|..+...|...|+
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 2555666666666666665543 3455666777777777777777777777662 2456677777777777777
Q ss_pred hHHHHHHHhhC-CCCCCHHh-HHHH------------HHHhccccchhHHHHHHHHHHHh
Q 045511 148 HKEAIDMFCGI-DVKPNANT-LVSV------------LSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 148 ~~~a~~~~~~m-~~~p~~~t-~~~l------------i~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+++|...|.++ ...|+... +..+ ...|.+.|++++|...++.+.+.
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777 55555433 2222 56666777777777777766653
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.49 E-value=1.2e-12 Score=105.41 Aligned_cols=186 Identities=12% Similarity=0.035 Sum_probs=152.2
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
..+ +.++.++|...+.++.+. .+.+..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+.+.|++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 345 778888888888888765 22456889999999999999999999999998865 24578889999999999999
Q ss_pred HHHHHHHHHHHHhccCccH---hHHHHHHH------------HHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHh
Q 045511 83 QKGLEIHAHVIKYGHLHDI---FIQNSLLH------------FYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSK 144 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~---~~~~~ll~------------~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 144 (209)
++|.+.|+.+.+.. +.+. ..+..+.. .+.+.|++++|.+.|+++. ..+...+..+...|.+
T Consensus 111 ~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 111 DEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999998754 2334 56665544 4888999999999999873 3467889999999999
Q ss_pred CCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 145 CGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 145 ~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.|++++|.+.|.++ ...| +..++..+...+...|++++|...++.+.+.
T Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998 4344 5678999999999999999999999988755
No 12
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=6.7e-12 Score=91.40 Aligned_cols=198 Identities=7% Similarity=-0.100 Sum_probs=160.7
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-cc
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA-HA 81 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-~~ 81 (209)
..+ +.++.++|.+.+.++.+.. +.+...|..+...+...|++++|...+++..+.. +.+..++..+...+... |+
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCc
Confidence 344 7788888888888887753 2346788999999999999999999999998754 34678889999999999 99
Q ss_pred HHHHHHHHHHHHHhccCc-cHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 82 HQKGLEIHAHVIKYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
+++|...++...+.+..| +...+..+...+...|++++|.+.+++.. ..+...+..+...+...|++++|...|++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998843333 36788999999999999999999998873 34578889999999999999999999999
Q ss_pred C-CCCC--CHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhh
Q 045511 158 I-DVKP--NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVL 206 (209)
Q Consensus 158 m-~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 206 (209)
. ...| +...+..+...+...|+.+.+..++..+.+. .|+......++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 8 4444 5667777888888999999999999888665 46555554443
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.47 E-value=4.9e-13 Score=102.84 Aligned_cols=156 Identities=9% Similarity=0.055 Sum_probs=70.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
.++..+...+.+.++.++|.+.++++...+..|+. ..+..+-..+...|++++|.+.++. +.+...+..+...
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 44455555555555555555555555444433332 2223333444555555555555443 2344455555555
Q ss_pred HHhCCChhhHHHHHHhcC--CCcHhH---HHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHH
Q 045511 111 YVTVKDIFSAHQIFNSVV--FPDVVT---WTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLG 183 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~--~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a 183 (209)
|.+.|++++|.+.|+++. .|+... ....+..+...|++++|..+|+++ ....+...++.+-.++.+.|++++|
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555442 122110 011222222334555555555555 2222334444444555555555555
Q ss_pred HHHHHHHHHh
Q 045511 184 KAIHAHSLRN 193 (209)
Q Consensus 184 ~~~~~~~~~~ 193 (209)
++.++...+.
T Consensus 220 ~~~l~~al~~ 229 (291)
T 3mkr_A 220 EGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555544433
No 14
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=7.8e-12 Score=92.32 Aligned_cols=184 Identities=12% Similarity=0.100 Sum_probs=152.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|...+.++.+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.
T Consensus 35 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp -------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHH
Confidence 7788889998888887642 2356888889999999999999999999998754 246788899999999999999999
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP 162 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p 162 (209)
+.++...+.. +.+...+..+...+.+.|++++|.+.+++.. ..+...+..+...+...|++++|...|.+. ...|
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999998875 4567889999999999999999999999873 346778899999999999999999999998 4444
Q ss_pred -CHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 163 -NANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 163 -~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
+..++..+...+...|++++|.+.++...+..
T Consensus 191 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 46788899999999999999999999887763
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.45 E-value=3e-12 Score=100.64 Aligned_cols=184 Identities=15% Similarity=0.127 Sum_probs=131.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|.+.+.++.+.. +.+..+|..+...+.+.|++++|...|++..+.. +.+..+|..+...+...|++++|.
T Consensus 77 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHH
Confidence 5556666666666665542 1244666777777777777777777777766543 224566666666666666666666
Q ss_pred HHHHHHHHhcc------------------------------------------Cc---cHhHHHHHHHHHHhCCChhhHH
Q 045511 87 EIHAHVIKYGH------------------------------------------LH---DIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 87 ~~~~~m~~~g~------------------------------------------~~---~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
+.++...+... .| +..++..+...|.+.|++++|.
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 66665544320 12 5778888888899999999999
Q ss_pred HHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 122 QIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 122 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+.|++.. ..+..+|+.+...|...|++++|...|.+. ...|+ ..++..+...|.+.|++++|...+....+.
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9988872 346778888999999999999999999888 55565 567888888888999999999999877665
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=5.2e-12 Score=93.88 Aligned_cols=185 Identities=13% Similarity=0.020 Sum_probs=154.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCC--CCCC----HHHHHHHHHHHhccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP--SSYN----HYTFTQALKACSLAH 80 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~t~~~ll~~~~~~~ 80 (209)
+.++.++|...+.++.+.. ++...|..+...+.+.|++++|...+++..+.. ..|+ ..+|..+-..+...|
T Consensus 17 ~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 6788888888888888775 778899999999999999999999999987643 1122 578888999999999
Q ss_pred cHHHHHHHHHHHHHhc------------------------cC-ccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcH
Q 045511 81 AHQKGLEIHAHVIKYG------------------------HL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDV 132 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g------------------------~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~ 132 (209)
++++|.+.|+...+.. .. .+...+..+...+...|++++|.+.+++.. ..+.
T Consensus 94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 173 (258)
T 3uq3_A 94 DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 173 (258)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH
Confidence 9999999999888742 22 245678889999999999999999999873 3467
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 133 VTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 133 ~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
..|..+...|...|++++|...|.+. ...|+ ..++..+-..+...|++++|.+.+....+..
T Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88999999999999999999999998 55555 6788889999999999999999999876653
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.42 E-value=5.8e-12 Score=98.73 Aligned_cols=184 Identities=12% Similarity=0.109 Sum_probs=122.5
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|...+.++.+.. +.+..+|..+...+.+.|++++|...|++..+.+ +.+..++..+...+...|++++|.
T Consensus 76 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4445555555555544331 1233455555555555555555555555554432 123444555555555555555544
Q ss_pred -------------------------------------------------HHHHHHHHhccCc-cHhHHHHHHHHHHhCCC
Q 045511 87 -------------------------------------------------EIHAHVIKYGHLH-DIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 87 -------------------------------------------------~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~ 116 (209)
+.++.+.+..... +..++..+...|.+.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 4444444433111 47788999999999999
Q ss_pred hhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 117 IFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 117 ~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
+++|.+.|++.. ..+...|..+...+...|++++|...|.+. ...|+ ..++..+...+.+.|++++|...+....
T Consensus 233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998873 345778999999999999999999999998 55554 5688889999999999999999999876
Q ss_pred Hh
Q 045511 192 RN 193 (209)
Q Consensus 192 ~~ 193 (209)
+.
T Consensus 313 ~~ 314 (368)
T 1fch_A 313 NM 314 (368)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.42 E-value=2.2e-11 Score=93.67 Aligned_cols=183 Identities=10% Similarity=-0.029 Sum_probs=115.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCC-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
+.++.+++...+.++.+.. +.+...|..+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|
T Consensus 68 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 68 ELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred HhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHH
Confidence 4555555555555555432 123456666666667777 6777777777766543 22445666667777777777777
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CC-
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DV- 160 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~- 160 (209)
.+.++...+.. +.+...+..+...|...|++++|.+.+++.. ..+...+..+...+...|++++|...|.+. ..
T Consensus 145 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 145 MAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 77777766654 2234555556667777777777777776652 234566677777777777777777777666 11
Q ss_pred ---------CCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 161 ---------KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 161 ---------~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
..+..++..+...+...|++++|...++...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 223456666777777777777777777766655
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.41 E-value=7.9e-12 Score=96.11 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=92.6
Q ss_pred HhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHH
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAI 152 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 152 (209)
+...|++++|.+.++...+.. +.+..++..+...|.+.|++++|.+.+++.. ..+...|..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 444455555555555555443 3357788889999999999999999998873 345778999999999999999999
Q ss_pred HHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 153 DMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 153 ~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
..|.+. ...| +..++..+...+...|++++|.+.++...+..
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999998 4445 46788888999999999999999999887664
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.40 E-value=2.4e-13 Score=109.08 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHH
Q 045511 28 IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107 (209)
Q Consensus 28 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 107 (209)
.+|...|..++..+.+.|++++|...++..++. .++..+.+.++.+|.+.|++++++++++ .|+..+|+.+
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I 128 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 128 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence 356667777777777777777777755544442 3445666667777777777766666663 3555677777
Q ss_pred HHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHH
Q 045511 108 LHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~ 184 (209)
...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+.++ .+..||..++.+|...|+++.|.
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp --------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHH
Confidence 77777777777777777765 35667777777777777777777664 25667777777777666666653
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.39 E-value=9.4e-14 Score=111.41 Aligned_cols=171 Identities=11% Similarity=0.097 Sum_probs=53.2
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
-++.++|.+.+++. +++.+|..+..++.+.|++++|.+.|.+. +|..+|..++.++...|+++++..
T Consensus 16 ~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 16 IGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 34455666555555 55579999999999999999999999763 678899999999999999999999
Q ss_pred HHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhH
Q 045511 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL 167 (209)
Q Consensus 88 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~ 167 (209)
.++..++. .+++.+.+.|+.+|.+.|++++++++++. |+..+|+.+-..|...|++++|...|..+ ..|
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~ 151 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNF 151 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------TCH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhH
Confidence 88777764 56688999999999999999999988864 78889999999999999999999999986 489
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHhhhc
Q 045511 168 VSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAVLDF 208 (209)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 208 (209)
..+..++.+.|+++.|.+.+... .++.+|..++.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 99999999999999999999877 256677776654
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=1.8e-11 Score=94.10 Aligned_cols=178 Identities=9% Similarity=0.057 Sum_probs=140.2
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC-cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ-PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
..++.+++.+.+.++..... .|+ ...+..+-..+.+.|++++|.+.+++ +.+...+..+...+.+.|++++|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~-~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSV-DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCC-CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44555666666666654321 244 45666667889999999999999987 46888999999999999999999
Q ss_pred HHHHHHHHHhccCccHh---HHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 86 LEIHAHVIKYGHLHDIF---IQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
.+.|+.+.+.. |+.. ....++..+...|++++|..+|+++. ..+...|+.+..++.+.|++++|...|.+.
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 4432 12334455566799999999999983 357889999999999999999999999998
Q ss_pred CCCC-CHHhHHHHHHHhccccchhH-HHHHHHHHHHh
Q 045511 159 DVKP-NANTLVSVLSACSSLGSRKL-GKAIHAHSLRN 193 (209)
Q Consensus 159 ~~~p-~~~t~~~li~~~~~~g~~~~-a~~~~~~~~~~ 193 (209)
...| +..++..++..+...|+.++ +.++++.+.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6666 45688889999999999865 67888887665
No 23
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=3.3e-11 Score=87.68 Aligned_cols=163 Identities=10% Similarity=0.024 Sum_probs=141.3
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34678889999999999999999999998754 3457889999999999999999999999998875 456789999999
Q ss_pred HHHhC-CChhhHHHHHHhcCC----C-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchh
Q 045511 110 FYVTV-KDIFSAHQIFNSVVF----P-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRK 181 (209)
Q Consensus 110 ~~~~~-g~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~ 181 (209)
.|... |++++|.+.++++.+ | +...+..+...+...|++++|...|.+. ...|+ ...+..+...+...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 999999999998743 2 2578889999999999999999999998 55554 678888999999999999
Q ss_pred HHHHHHHHHHHhc
Q 045511 182 LGKAIHAHSLRNL 194 (209)
Q Consensus 182 ~a~~~~~~~~~~~ 194 (209)
+|...++...+..
T Consensus 165 ~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 165 DADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887764
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.37 E-value=5.5e-11 Score=91.46 Aligned_cols=183 Identities=9% Similarity=-0.025 Sum_probs=153.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc-cHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH-AHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a 85 (209)
..++.++|.+.+.++.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+...|..+-..+...| ++++|
T Consensus 34 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A 110 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHA 110 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHH
Confidence 6678888888888877653 2345677778888999999999999999998854 235678888889999999 99999
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCC
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVK 161 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~ 161 (209)
.+.|+...+.. +.+...|..+...+...|++++|.+.+++.. ..+...+..+...|...|++++|...|.+. ...
T Consensus 111 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 111 RRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999998765 4457789999999999999999999999873 234567777899999999999999999998 555
Q ss_pred CC-HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 PN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|+ ..++..+...+...|++++|...+....+.
T Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 54 578889999999999999999999988765
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.36 E-value=1.1e-10 Score=86.68 Aligned_cols=161 Identities=9% Similarity=-0.081 Sum_probs=140.5
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4678888899999999999999999998764 3467889999999999999999999999998875 4467899999999
Q ss_pred HHhCCChhhHHHHHHhcCC----C-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHH
Q 045511 111 YVTVKDIFSAHQIFNSVVF----P-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLG 183 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a 183 (209)
|...|++++|.+++++..+ | +...+..+...+...|++++|...|.+. ...| +...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998744 3 4668888999999999999999999998 4445 467888999999999999999
Q ss_pred HHHHHHHHHh
Q 045511 184 KAIHAHSLRN 193 (209)
Q Consensus 184 ~~~~~~~~~~ 193 (209)
...+....+.
T Consensus 195 ~~~~~~~~~~ 204 (252)
T 2ho1_A 195 RQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.35 E-value=3.1e-11 Score=88.61 Aligned_cols=181 Identities=9% Similarity=-0.019 Sum_probs=125.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-------
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA------- 79 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~------- 79 (209)
+.++.++|...+.++.+.. +.+...|..+-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.
T Consensus 17 ~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 93 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDR 93 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhh
Confidence 6677777777776665542 2345778888888888888888888888887754 23456777777888888
Q ss_pred ----ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--CcHhHHHHHHHHHHhCCChHHHHH
Q 045511 80 ----HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 80 ----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~ 153 (209)
|++++|...++...+.. +-+...+..+-..|...|++++|...|++..+ .+...+..+-..|...|++++|..
T Consensus 94 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887764 34567788888888888888888888877621 567778888888888888888888
Q ss_pred HHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 154 MFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 154 ~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
.|++. ...|+ ...+..+...+...|++++|.+.++...
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888 55564 4567777888888888888888877653
No 27
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=8.8e-11 Score=82.65 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 567778888999999999999999988753 3467889999999999999999999999998774 45678899999999
Q ss_pred HhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHH
Q 045511 112 VTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
...|++++|.+.+++.. ..+...+..+...+...|++++|.+.|.+. ...| +..++..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999873 356788889999999999999999999998 4444 457888899999999999999999
Q ss_pred HHHHHHhc
Q 045511 187 HAHSLRNL 194 (209)
Q Consensus 187 ~~~~~~~~ 194 (209)
+....+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99887664
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.34 E-value=1.4e-11 Score=96.58 Aligned_cols=183 Identities=10% Similarity=-0.049 Sum_probs=142.1
Q ss_pred cCCCcchH-hHHHHHHHHhhCC--CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 9 LKPTLSFK-QLNQIHAQIIKIP--QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 9 ~~~~~a~~-~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
++.+.+.+ .+.+.....+..| +...+..+-..+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 44445555 4554443333333 45788899999999999999999999999864 34678899999999999999999
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC-------------------------------------
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV------------------------------------- 128 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~------------------------------------- 128 (209)
.+.|+...+.. +.+..++..+...|...|++++|.+.++++.
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 99999999876 4578899999999999999999999887651
Q ss_pred --------------CC---cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHHH
Q 045511 129 --------------FP---DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 129 --------------~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
.| +..++..+...|...|++++|...|.+. ...|+ ..++..+...+...|++++|...++.
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01 4567788888888889999998888887 44554 56788888888888999999888888
Q ss_pred HHHh
Q 045511 190 SLRN 193 (209)
Q Consensus 190 ~~~~ 193 (209)
..+.
T Consensus 277 al~~ 280 (368)
T 1fch_A 277 ALEL 280 (368)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.34 E-value=1.5e-10 Score=84.97 Aligned_cols=163 Identities=12% Similarity=-0.031 Sum_probs=141.9
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
++...+..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|...++...+.. +.+...+..+-
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 566788889999999999999999999998864 2466888889999999999999999999999875 45678899999
Q ss_pred HHHHhC-----------CChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHH
Q 045511 109 HFYVTV-----------KDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSA 173 (209)
Q Consensus 109 ~~~~~~-----------g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~ 173 (209)
..|.+. |++++|...|++.. .| +...|..+-..|...|++++|+..|++. .+..+...+..+-..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 999999 99999999999873 34 5778888999999999999999999998 222778889999999
Q ss_pred hccccchhHHHHHHHHHHHh
Q 045511 174 CSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~ 193 (209)
+...|++++|...++...+.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998776
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.32 E-value=8.7e-11 Score=86.61 Aligned_cols=174 Identities=8% Similarity=-0.027 Sum_probs=128.4
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
.....|..+-..+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.++...+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344788888889999999999999999998854 3467889999999999999999999999998875 45678999999
Q ss_pred HHHHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHH
Q 045511 109 HFYVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLG 183 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a 183 (209)
..|...|++++|.+.+++. ...+...+..+...+...|++++|...+.+. ...| +...+..+...+...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999987 3356778999999999999999999999998 4444 567888899999999999999
Q ss_pred HHHHHHHHHhccCCCchhHhHh
Q 045511 184 KAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 184 ~~~~~~~~~~~~~p~~~~~~~l 205 (209)
...+....+.. ..+...+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~l 199 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNA 199 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHH
Confidence 99999887763 2233444443
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.7e-11 Score=98.00 Aligned_cols=183 Identities=7% Similarity=-0.015 Sum_probs=102.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|.+.+.++.+.. +.+..+|..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|.
T Consensus 282 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555554432 12335555566666666666666666666555431 23455555566666666666666
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-----Cc----HhHHHHHHHHHHh---CCChHHHHHH
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PD----VVTWTTIISGLSK---CGFHKEAIDM 154 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~---~g~~~~a~~~ 154 (209)
..++...+.. +.+..++..+...|.+.|++++|.+.++++.+ ++ ...|..+...+.. .|++++|...
T Consensus 359 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 359 TLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 6666655543 23445566666666666666666666655521 11 2255666666666 6666666666
Q ss_pred HhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 155 FCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 155 ~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|+.. ...| +..++..+...+.+.|++++|.+.++...+.
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6665 3333 3345555666666666666666666655554
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.29 E-value=1.7e-11 Score=96.29 Aligned_cols=185 Identities=12% Similarity=0.020 Sum_probs=144.6
Q ss_pred hcch-hccCCCcchHhHHHHHHHHhhCCCc--------ccHHHHHHHHHcCCCccchHHHHHHhhhCCCC-CCHHHHHHH
Q 045511 3 VNGL-KSLKPTLSFKQLNQIHAQIIKIPQP--------HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-YNHYTFTQA 72 (209)
Q Consensus 3 i~~~-~~~~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~l 72 (209)
..++ +.++.++|.+.+.++.+..+..++. ..+..+...+.+.|++++|...|+++.+.+.. ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 3455 7788888888888887765332222 23345578899999999999999999886422 267899999
Q ss_pred HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChH
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHK 149 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 149 (209)
...+.+.|++++|.+.|+...+.. +.+..+|+.+...|.+.|++++|.+.|++.. ..+..+|..+...|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999998875 4568899999999999999999999999873 345788999999999999999
Q ss_pred HHHHHHhhC-CCCCC-------------HHhHHHHHHHhccccchhHHHHHHH
Q 045511 150 EAIDMFCGI-DVKPN-------------ANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 150 ~a~~~~~~m-~~~p~-------------~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
+|...|++. ...|+ ...+..+-.++...|+.+.+..+..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999998 33332 6788999999999999998887754
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.28 E-value=5.7e-11 Score=91.25 Aligned_cols=194 Identities=7% Similarity=-0.047 Sum_probs=149.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|...+.++.+.. +.+...|..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.
T Consensus 33 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 109 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAAL 109 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6777788888888777653 2355788889999999999999999999998763 346788889999999999999999
Q ss_pred HHHHHHHHhccCccHhHHHHH--------------HH-HHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCCh
Q 045511 87 EIHAHVIKYGHLHDIFIQNSL--------------LH-FYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFH 148 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 148 (209)
+.++...+.. +.+...+..+ .. .+...|++++|.+.+++.. ..+...+..+...+...|++
T Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 188 (327)
T 3cv0_A 110 ASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY 188 (327)
T ss_dssp HHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Confidence 9999988764 2222333333 22 3778889999999998873 34678899999999999999
Q ss_pred HHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHh
Q 045511 149 KEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 149 ~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 205 (209)
++|...|.+. ...| +..++..+...+...|++++|.+.+....+.. ..+...+..+
T Consensus 189 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 246 (327)
T 3cv0_A 189 DSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 9999999998 4455 46788999999999999999999999887764 2233444443
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.27 E-value=3.3e-10 Score=87.87 Aligned_cols=187 Identities=12% Similarity=0.012 Sum_probs=155.6
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
..+ +.++.++|...+.++.+.. +.+...|..+...+.+.|++++|...|++..+.. +-+...|..+...+...|++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 344 7888889998888888753 2356889999999999999999999999998754 23668899999999999999
Q ss_pred HHHHHHHHHHHHhccC--ccHhHHHHH------------HHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC
Q 045511 83 QKGLEIHAHVIKYGHL--HDIFIQNSL------------LHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC 145 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 145 (209)
++|.+.++...+.... .+...+..+ ...+...|++++|.+++++.. ..+...+..+...+...
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE 167 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC
Confidence 9999999999876420 244555555 578999999999999999873 35678899999999999
Q ss_pred CChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 146 GFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 146 g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|++++|...|.+. ...| +..++..+...+...|++++|...+....+.
T Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998 5555 5678889999999999999999999988765
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=7e-10 Score=78.69 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=139.6
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
++.+|..+=..+.+.|++++|.+.|++..+.. +-+...+..+-..+.+.|+++.+.+.+....+.. +.+...+..+-.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45788899999999999999999999998854 2366788999999999999999999999988765 456778888888
Q ss_pred HHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHH
Q 045511 110 FYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~ 184 (209)
.+...++++.|.+.+.+.. ..+...+..+-..|.+.|++++|++.|++. .+.|+ ..++..+-..+.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998873 346778889999999999999999999998 66664 467888999999999999999
Q ss_pred HHHHHHHHh
Q 045511 185 AIHAHSLRN 193 (209)
Q Consensus 185 ~~~~~~~~~ 193 (209)
+.|+...+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999988765
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.3e-10 Score=91.71 Aligned_cols=186 Identities=8% Similarity=0.000 Sum_probs=158.1
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
.++ +.++.++|.+.+.++.+.. |+...|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 445 7788888888888887764 448888999999999999999999999998864 34667899999999999999
Q ss_pred HHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI- 158 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 158 (209)
+.|...++...+.. +.+..++..+...|...|++++|.++++... ..+...|..+...+...|++++|...|.++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999998865 4467799999999999999999999999873 345678899999999999999999999998
Q ss_pred CCCCC-------HHhHHHHHHHhcc---ccchhHHHHHHHHHHHhc
Q 045511 159 DVKPN-------ANTLVSVLSACSS---LGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 159 ~~~p~-------~~t~~~li~~~~~---~g~~~~a~~~~~~~~~~~ 194 (209)
...|+ ..++..+...+.. .|++++|...++...+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 33333 3388888999999 999999999999887763
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.8e-10 Score=85.42 Aligned_cols=161 Identities=11% Similarity=-0.007 Sum_probs=138.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccC--cc----HhHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL--HD----IFIQN 105 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~----~~~~~ 105 (209)
..|..+-..+.+.|++++|...|++..+.. .+...|..+-..+...|++++|.+.++...+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 567888889999999999999999999887 78899999999999999999999999998876422 12 57899
Q ss_pred HHHHHHHhCCChhhHHHHHHhcCC-----------------------------CcHhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVVF-----------------------------PDVVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~~-----------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
.+...|.+.|++++|.+.|++..+ .+...|..+...+...|++++|...|.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999987632 134578888899999999999999999
Q ss_pred hC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 157 GI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 157 ~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
+. ...| +..++..+...+...|++++|...+....+..
T Consensus 164 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 98 4444 46788999999999999999999999987764
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.25 E-value=1.1e-09 Score=84.93 Aligned_cols=186 Identities=15% Similarity=0.044 Sum_probs=150.8
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
..+ ..++.++|.+.+.++.+..+ .+...+..+...+.+.|++++|...+++..+.. +.+..++..+...+...|++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344 67788888888888876642 355889999999999999999999999998864 45778899999999999999
Q ss_pred HHHHHHHHHHHHhccCccHhHHH------------HHHHHHHhCCChhhHHHHHHhcC--CCc-H----hHHHHHHHHHH
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQN------------SLLHFYVTVKDIFSAHQIFNSVV--FPD-V----VTWTTIISGLS 143 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~--~~~-~----~~~~~li~~~~ 143 (209)
++|.+.++...+.. +.+...+. .+...+.+.|++++|.+.+++.. .|+ . ..+..+-..+.
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999998765 23333333 23667899999999999999873 233 2 23556778999
Q ss_pred hCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 144 KCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
..|++++|...|.+. ...| +..++..+-..+...|++++|.+.+....+.
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999998 5556 6678999999999999999999999988776
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.21 E-value=1.3e-09 Score=81.78 Aligned_cols=184 Identities=11% Similarity=0.020 Sum_probs=147.2
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC--HHHHHHHHHHHhccccHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--HYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~ 84 (209)
+.++.++|.+.+.++.+..+ .+...|..+...+.+.|++++|...+++..+.+-.|+ ...|..+-..+...|++++
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 77888888888888876532 2446899999999999999999999999988442222 2348889999999999999
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CC
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DV 160 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~ 160 (209)
|.+.|+...+.. +.+..++..+-..|...|++++|.+.|++..+ .+...|..+-..+...+++++|.+.|.+. ..
T Consensus 93 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 93 AIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998875 44668999999999999999999999999843 35666777663444556999999999999 66
Q ss_pred CCC-HHhHHHHHHHhccccc---hhHHHHHHHHHHHh
Q 045511 161 KPN-ANTLVSVLSACSSLGS---RKLGKAIHAHSLRN 193 (209)
Q Consensus 161 ~p~-~~t~~~li~~~~~~g~---~~~a~~~~~~~~~~ 193 (209)
.|+ ...+..+...+...|+ .++|...+....+.
T Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 666 4667777777777787 88899888877655
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.19 E-value=1.1e-09 Score=89.97 Aligned_cols=183 Identities=10% Similarity=-0.002 Sum_probs=145.2
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
..++.++|.+.+.++.+. .|+...|..+...+.+.|++++|...|++..+.. +.+..+|..+...+...|++++|.
T Consensus 255 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 456666777777776664 3667888889999999999999999999998754 245788999999999999999999
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP 162 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p 162 (209)
+.++...+.. +.+..++..+...|...|++++|.+.+++.. ..+...+..+...+...|++++|...|.+. ...|
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999998875 3456789999999999999999999998873 345678889999999999999999999987 2222
Q ss_pred -------CHHhHHHHHHHhccc----------cchhHHHHHHHHHHHhc
Q 045511 163 -------NANTLVSVLSACSSL----------GSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 163 -------~~~t~~~li~~~~~~----------g~~~~a~~~~~~~~~~~ 194 (209)
....+......+... |++++|...++...+..
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 222233444556666 99999999999887763
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=1.7e-09 Score=83.46 Aligned_cols=178 Identities=12% Similarity=0.047 Sum_probs=141.4
Q ss_pred CcchHhHHHHHHHHhhCCCc-ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH-H-HHHHHHHHHhccccHHHHHHH
Q 045511 12 TLSFKQLNQIHAQIIKIPQP-HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH-Y-TFTQALKACSLAHAHQKGLEI 88 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~ 88 (209)
++|...+.++.+. ..|+. ..|..+...+.+.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+
T Consensus 81 ~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 5566555555542 13544 6899999999999999999999999998 44543 3 799999999999999999999
Q ss_pred HHHHHHhccCccHhHHHHHHHHHH-hCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-C---C
Q 045511 89 HAHVIKYGHLHDIFIQNSLLHFYV-TVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-D---V 160 (209)
Q Consensus 89 ~~~m~~~g~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~---~ 160 (209)
|+...+.. +++...|........ ..|++++|.++|+... ..+...|..++..+.+.|++++|..+|.+. . +
T Consensus 157 ~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 99998765 344555654444322 3799999999999873 236788999999999999999999999998 3 3
Q ss_pred CCC--HHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 161 KPN--ANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 161 ~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.|+ ...|..++....+.|+.+.|..++..+.+..
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 653 4678888999999999999999999887763
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.18 E-value=8e-10 Score=82.88 Aligned_cols=186 Identities=11% Similarity=-0.052 Sum_probs=113.8
Q ss_pred hccCCCcchHhHHHHHHHHhh--CCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIK--IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 84 (209)
+.++.++|.+.+.++.+.... ..+..+|..+...+...|++++|...|++..+.+ +.+..+|..+-..+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 455666666666666654211 1133666666677777777777777777766543 2345666666677777777777
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHH-------------------------
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTT------------------------- 137 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~------------------------- 137 (209)
|.+.|+...+.. +.+..++..+...|.+.|++++|.+.|++.. .|+......
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777777666653 3345666677777777777777777776652 232222222
Q ss_pred --------HHHHHHhCCChHHHHHHHhhC-CCCCC-----HHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 138 --------IISGLSKCGFHKEAIDMFCGI-DVKPN-----ANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 138 --------li~~~~~~g~~~~a~~~~~~m-~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
+...+...++.++|...+.+. ...|+ ..++..+...+.+.|++++|...++...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 333333444444444444444 33332 4677788888889999999999998887653
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=88.09 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=149.9
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhC------CCcccHHHHHHHHHcCCCccchHHHHHHhhhC------C-CCCCHHHH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKI------PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC------P-SSYNHYTF 69 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~------p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g-~~p~~~t~ 69 (209)
..+ ..++.++|...+.++.+..... ....++..+...+...|++++|...+++.... + .+....++
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 445 7788888998888888764321 12377888999999999999999999998764 2 22345778
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhc------c-CccHhHHHHHHHHHHhCCChhhHHHHHHhcC----------CC-c
Q 045511 70 TQALKACSLAHAHQKGLEIHAHVIKYG------H-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV----------FP-D 131 (209)
Q Consensus 70 ~~ll~~~~~~~~~~~a~~~~~~m~~~g------~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~-~ 131 (209)
..+...+...|++++|.+.++...+.. - +....++..+-..|...|++++|.+++++.. .| .
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 194 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 889999999999999999999887652 2 2245678899999999999999999998762 12 2
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHhhC-C-------------------------------------------------CC
Q 045511 132 VVTWTTIISGLSKCGFHKEAIDMFCGI-D-------------------------------------------------VK 161 (209)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~a~~~~~~m-~-------------------------------------------------~~ 161 (209)
..++..+...|...|++++|...|.+. . ..
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 457888999999999999999999887 2 12
Q ss_pred CC-HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 PN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|+ ..++..+...|.+.|++++|.+.++...+.
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32 356888899999999999999999877654
No 44
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=1.4e-09 Score=72.24 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 113 (209)
|..+...+.+.|++++|..+++++.+.+ +.+...+..+...+...|+++.|...++.+.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444445555555555555555554432 1233444444445555555555555555544433 2233444444444444
Q ss_pred CCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 114 VKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 114 ~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
.|++++|.++++++. ..+...+..+...+...|++++|...|.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 455555544444431 12233444444444444444444444443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.15 E-value=2.9e-10 Score=85.30 Aligned_cols=152 Identities=12% Similarity=-0.019 Sum_probs=128.7
Q ss_pred HHcCCCccchHHHHHHhhhCCCC---CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPSS---YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
....|++++|...|+++.+.... .+..+|..+...+...|++++|.+.|+...+.. +.+..+|..+...|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999999886421 246788899999999999999999999999875 45688999999999999999
Q ss_pred hhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 118 FSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 118 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
++|.+.|++.. ..+...+..+...|...|++++|...|+++ ...|+.......+..+...|++++|...+....+.
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999883 346788999999999999999999999999 77777776666666777889999999999877665
No 46
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=2.1e-10 Score=86.07 Aligned_cols=186 Identities=15% Similarity=0.086 Sum_probs=148.3
Q ss_pred hccCCCcchHhHHHHHHHHhhC-----C-CcccHHHHHHHHHcCCCccchHHHHHHhhhC------CC-CCCHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKI-----P-QPHILNTLLKLLTQSSTPQNAIPLYNKMLNC------PS-SYNHYTFTQAL 73 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~-----p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~-~p~~~t~~~ll 73 (209)
..+.++.|.+.+.+..+..... | ...++..+-..+...|++++|...+++..+. +- +....++..+-
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 5678889999999888876322 1 2378899999999999999999999998764 22 23457889999
Q ss_pred HHHhccccHHHHHHHHHHHHHhc-------cCccHhHHHHHHHHHHhCCChhhHHHHHHhcC----------CC-cHhHH
Q 045511 74 KACSLAHAHQKGLEIHAHVIKYG-------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV----------FP-DVVTW 135 (209)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~g-------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~-~~~~~ 135 (209)
..+...|++++|.+.++...+.. -+....++..+-..|...|++++|.+.+++.. .| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999887652 12345688999999999999999999998762 22 35678
Q ss_pred HHHHHHHHhCCChHHHHHHHhhC-CC-------------------------------------------------CCC-H
Q 045511 136 TTIISGLSKCGFHKEAIDMFCGI-DV-------------------------------------------------KPN-A 164 (209)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m-~~-------------------------------------------------~p~-~ 164 (209)
..+...|...|++++|...|.+. .. .|+ .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999999877 11 122 2
Q ss_pred HhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 165 NTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 165 ~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
.++..+...+...|++++|...++...+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888899999999999999987754
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=1.2e-09 Score=93.64 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=140.1
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
..+|+.+-..+.+.|++++|.+.|++..+.. | +...|..+-.++.+.|++++|.+.|+...+.. +-+...|+.+-.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3789999999999999999999999998853 4 46889999999999999999999999998865 345789999999
Q ss_pred HHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHH
Q 045511 110 FYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~ 184 (209)
.|.+.|++++|.+.|++.. ..+...|+.+-..|.+.|++++|++.|++. .+.|+. ..+..+...+...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999999873 346789999999999999999999999998 777865 67889999999999999999
Q ss_pred HHHHHHHH
Q 045511 185 AIHAHSLR 192 (209)
Q Consensus 185 ~~~~~~~~ 192 (209)
+.++...+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88886644
No 48
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.15 E-value=6.6e-10 Score=91.25 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=139.0
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 112 (209)
+|..+-..+...|++++|...|++..+. .|+...+..+-..+...|+++.|.+.++...+.. +.+..++..+...|.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 5677778888999999999999999985 4668889999999999999999999999998875 456789999999999
Q ss_pred hCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHH
Q 045511 113 TVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIH 187 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~ 187 (209)
..|++++|.+.|++.. ..+...|..+...+...|++++|...|.+. ...|+ ...+..+...+...|++++|.+.+
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999873 335678999999999999999999999998 44554 568888999999999999999999
Q ss_pred HHHHHhc
Q 045511 188 AHSLRNL 194 (209)
Q Consensus 188 ~~~~~~~ 194 (209)
....+..
T Consensus 402 ~~a~~~~ 408 (537)
T 3fp2_A 402 DIAKRLE 408 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 9887654
No 49
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=5.1e-09 Score=69.41 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=108.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSK 144 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 144 (209)
.|..+...+...|++++|..+++.+.+.. +.+..++..+...+...|++++|.++++++. ..+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56777888899999999999999998775 4567888999999999999999999999873 3467788899999999
Q ss_pred CCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 145 CGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 145 ~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.|++++|...|.++ ...| +..++..+...+...|++++|...+..+.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999998 4444 5678888999999999999999999988765
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=9.3e-09 Score=75.39 Aligned_cols=164 Identities=12% Similarity=0.046 Sum_probs=128.8
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
.|+..|...-..+.+.|++++|...|++..+..-+++...+..+-..+...|++++|.+.++...+.. +.+..+|..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34567777778888899999999999988886544677777778888889999999999999888754 33567888888
Q ss_pred HHHHhCCChhhHHHHHHhcC--CC-cH-------hHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC---HHhHHHHHHHh
Q 045511 109 HFYVTVKDIFSAHQIFNSVV--FP-DV-------VTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN---ANTLVSVLSAC 174 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~--~~-~~-------~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~---~~t~~~li~~~ 174 (209)
..|...|++++|.+.+++.. .| +. ..|..+-..+...|++++|.+.|.+. ...|+ ...+..+-..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 99999999999999998873 23 33 45777778888899999999999888 77777 35667777777
Q ss_pred ccccch---------------------------hHHHHHHHHHHHh
Q 045511 175 SSLGSR---------------------------KLGKAIHAHSLRN 193 (209)
Q Consensus 175 ~~~g~~---------------------------~~a~~~~~~~~~~ 193 (209)
...|+. ++|...++...+.
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777776 7888888777665
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=6.4e-09 Score=80.13 Aligned_cols=189 Identities=11% Similarity=-0.003 Sum_probs=140.6
Q ss_pred chHhHHHHHHHHhhCCCcccHHHHHHHHH-------cCCCc-------cchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 045511 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLT-------QSSTP-------QNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79 (209)
Q Consensus 14 a~~~~~~~~~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 79 (209)
+...+.++.+.. +.++..|..+...+. +.|++ ++|..+|++..+.--+-+...|..+...+.+.
T Consensus 35 a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 35 VMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 344555555543 234578888777775 45887 89999999998841223556899999999999
Q ss_pred ccHHHHHHHHHHHHHhccCcc-Hh-HHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHH-HHhCCChHHHHH
Q 045511 80 HAHQKGLEIHAHVIKYGHLHD-IF-IQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISG-LSKCGFHKEAID 153 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~~~a~~ 153 (209)
|++++|.++|+...+. .|+ .. +|..+...+.+.|++++|.++|++..+ .+...|...... +...|++++|..
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 454 33 899999999999999999999998743 233444433322 223799999999
Q ss_pred HHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHhc-cCCC--chhHhHhh
Q 045511 154 MFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNL-NENN--IILDNAVL 206 (209)
Q Consensus 154 ~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~li 206 (209)
+|.+. ...| +...+..++..+.+.|++++|..+|+...+.. +.|+ ...|..++
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99988 4445 45678888999999999999999999998873 4553 34555544
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.12 E-value=2.6e-09 Score=75.69 Aligned_cols=161 Identities=11% Similarity=0.034 Sum_probs=134.1
Q ss_pred hcch-hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc
Q 045511 3 VNGL-KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81 (209)
Q Consensus 3 i~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 81 (209)
..++ +.|+.++|.+.+.++.+..+ -+..+|..+-..+.+.|++++|...++....... -+...+..+-..+...++
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 88 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDE 88 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCC
Confidence 3455 78889999999998887642 3558899999999999999999999999887543 355677777888899999
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
++.+.+.+....+.. +.+...+..+-..|.+.|++++|.+.|++.. ..+..+|..+-..|.+.|++++|.+.|++.
T Consensus 89 ~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 89 KQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999888765 4567889999999999999999999999873 346788999999999999999999999987
Q ss_pred -CCCCCHHhH
Q 045511 159 -DVKPNANTL 167 (209)
Q Consensus 159 -~~~p~~~t~ 167 (209)
.+.|+..-|
T Consensus 168 l~~~p~~a~~ 177 (184)
T 3vtx_A 168 LEKEEKKAKY 177 (184)
T ss_dssp HHTTHHHHHH
T ss_pred HhCCccCHHH
Confidence 666665433
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.09 E-value=1e-09 Score=89.77 Aligned_cols=176 Identities=9% Similarity=-0.094 Sum_probs=113.2
Q ss_pred hccCC-CcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc------
Q 045511 7 KSLKP-TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA------ 79 (209)
Q Consensus 7 ~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~------ 79 (209)
..++. ++|.+.+.++.+.. +.+...|..+-..+.+.|++++|...|++..+.. |+...+..+-..+...
T Consensus 114 ~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHH
T ss_pred hccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChh
Confidence 45555 66666666665542 1234667777777777777777777777776643 5566666677777776
Q ss_pred ---ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC--------CChhhHHHHHHhcC--CC----cHhHHHHHHHHH
Q 045511 80 ---HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV--------KDIFSAHQIFNSVV--FP----DVVTWTTIISGL 142 (209)
Q Consensus 80 ---~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~--~~----~~~~~~~li~~~ 142 (209)
|++++|.+.|+...+.. +.+...|..+-..|... |++++|.+.|++.. .| +...|..+-..|
T Consensus 190 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence 77777777777766654 33456667777777666 67777777776652 23 556677777777
Q ss_pred HhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHH
Q 045511 143 SKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIH 187 (209)
Q Consensus 143 ~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~ 187 (209)
...|++++|.+.|++. ...|+. ..+..+-..+...|++++|.+.+
T Consensus 269 ~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777766 444543 34556666666666666666543
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.09 E-value=1.2e-08 Score=76.36 Aligned_cols=162 Identities=10% Similarity=-0.050 Sum_probs=130.4
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--HhHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--IFIQNSLLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~ 109 (209)
..+-..-..+.+.|++++|...|++..+... -+...+..+...+...|++++|.+.++...+.+..++ ..+|..+-.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3455667788899999999999999988642 3445888888899999999999999999988442222 335899999
Q ss_pred HHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHH
Q 045511 110 FYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~ 184 (209)
.|...|++++|.+.|++.. ..+...|..+-..|...|++++|...|.+. ...|+. ..+..+-..+...+++++|.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999873 345678999999999999999999999998 666755 45555552455566999999
Q ss_pred HHHHHHHHhc
Q 045511 185 AIHAHSLRNL 194 (209)
Q Consensus 185 ~~~~~~~~~~ 194 (209)
+.+....+..
T Consensus 163 ~~~~~a~~~~ 172 (272)
T 3u4t_A 163 SSFVKVLELK 172 (272)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9999887763
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.08 E-value=5.2e-09 Score=83.38 Aligned_cols=180 Identities=9% Similarity=0.046 Sum_probs=148.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCC-ccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSST-PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
+.++.++|.+.+.++.+.. +.+..+|+.+-..+.+.|+ +++|...|++..+.+- -+...|..+-.++.+.|++++|
T Consensus 109 ~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTH
T ss_pred HCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHH
Confidence 5677888888888887764 2245889999999999997 9999999999998542 3668899999999999999999
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHh-CCChHHH-----HHHHh
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSK-CGFHKEA-----IDMFC 156 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~-~g~~~~a-----~~~~~ 156 (209)
...|+..++.. +-+...|..+-..+.+.|++++|...|++.. ..+...|+.+-..+.. .|..++| +..|+
T Consensus 186 l~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 186 LEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 99999999875 5578899999999999999999999999983 3467889999999999 6665777 47777
Q ss_pred hC-CCCCCH-HhHHHHHHHhcccc--chhHHHHHHHHH
Q 045511 157 GI-DVKPNA-NTLVSVLSACSSLG--SRKLGKAIHAHS 190 (209)
Q Consensus 157 ~m-~~~p~~-~t~~~li~~~~~~g--~~~~a~~~~~~~ 190 (209)
+. .+.|+. ..|..+-..+...| ++++|.+.+..+
T Consensus 265 ~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 265 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77 667754 56777777788877 688998888776
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=1e-09 Score=77.15 Aligned_cols=148 Identities=12% Similarity=-0.004 Sum_probs=122.7
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
..++.+++.+.+.++.+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 20 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 96 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAV 96 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 4556666665555554332 2345788899999999999999999999998763 346788888999999999999999
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+.++...+.. +.+...+..+...+...|++++|.+.+++.. ..+...+..+...+...|++++|...+++.
T Consensus 97 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 97 PLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998875 4577889999999999999999999999873 346788999999999999999999999887
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.06 E-value=1.8e-08 Score=75.91 Aligned_cols=176 Identities=14% Similarity=-0.021 Sum_probs=89.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHc----CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc----
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQ----SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL---- 78 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~---- 78 (209)
+.++.++|.+.+.+..+ ..+..++..+-..+.+ .+++++|...|++..+.+ +...+..+-..+..
T Consensus 18 ~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred hCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCc
Confidence 34455555555555544 1233455555555555 566666666666655544 44555555555555
Q ss_pred cccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh----CCChhhHHHHHHhcCC-CcHhHHHHHHHHHHh----CCChH
Q 045511 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT----VKDIFSAHQIFNSVVF-PDVVTWTTIISGLSK----CGFHK 149 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~ 149 (209)
.+++++|.+.|+...+.+ +...+..+-..|.. .+++++|.+.|++..+ .+...+..+-..|.. .++++
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHH
Confidence 566666666665555543 44555555555555 5566666655555421 233344444444444 55555
Q ss_pred HHHHHHhhC-CCCCCHHhHHHHHHHhcc----ccchhHHHHHHHHHHHh
Q 045511 150 EAIDMFCGI-DVKPNANTLVSVLSACSS----LGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 150 ~a~~~~~~m-~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~ 193 (209)
+|...|++. .. -+...+..+-..+.. .+++++|.+.++...+.
T Consensus 168 ~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 168 KALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 555555554 11 122334444444444 55555555555544443
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=2.8e-08 Score=74.80 Aligned_cols=176 Identities=11% Similarity=-0.025 Sum_probs=146.1
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHc----CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc----c
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQ----SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL----A 79 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~ 79 (209)
.++.++|.+.+.+..+. .+..++..+-..+.+ .+++++|...|++..+.+ +...+..+-..+.. .
T Consensus 55 ~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred CCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc
Confidence 56666677667666554 367888889899999 999999999999999876 67788888888888 9
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh----CCChhhHHHHHHhcCC-CcHhHHHHHHHHHHh----CCChHH
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT----VKDIFSAHQIFNSVVF-PDVVTWTTIISGLSK----CGFHKE 150 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~ 150 (209)
+++++|.+.|+...+.+ +...+..+-..|.. .+++++|.+.|++..+ .+...+..+-..|.. .+++++
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHH
Confidence 99999999999998876 56778888888888 8999999999988733 456778888888888 999999
Q ss_pred HHHHHhhC-CCCCCHHhHHHHHHHhcc----ccchhHHHHHHHHHHHhc
Q 045511 151 AIDMFCGI-DVKPNANTLVSVLSACSS----LGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 151 a~~~~~~m-~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 194 (209)
|...|++. ...| ...+..+-..+.+ .+++++|.+.++...+.|
T Consensus 205 A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 205 ALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999987 4444 5667777778888 999999999999988886
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.03 E-value=9.8e-09 Score=84.00 Aligned_cols=162 Identities=9% Similarity=-0.008 Sum_probs=142.0
Q ss_pred CcccHHHHHHHHHcCCCc-cchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTP-QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
+...|..+-..+...|++ ++|...|++..+.. +-+...|..+-..+.+.|++++|.+.|+...+.. |+...+..+-
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 447888888999999999 99999999998754 2357889999999999999999999999998864 6678999999
Q ss_pred HHHHhC---------CChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC--------CChHHHHHHHhhC-CCCC----C
Q 045511 109 HFYVTV---------KDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC--------GFHKEAIDMFCGI-DVKP----N 163 (209)
Q Consensus 109 ~~~~~~---------g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m-~~~p----~ 163 (209)
..|... |++++|.+.|++.. ..+...|..+-..|... |++++|...|++. .+.| +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 999999 99999999999873 34678899999999888 9999999999998 6666 6
Q ss_pred HHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 164 ANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 164 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
...+..+-..+...|++++|.+.|+...+..
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999887763
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=3.2e-09 Score=80.83 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=133.5
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhC-------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc------c-
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNC-------PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG------H- 97 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~- 97 (209)
.++..+...+...|++++|..+|++..+. ..+.....+..+-..+...|++++|.+.++...+.. -
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77888999999999999999999999873 233455778889999999999999999999887652 1
Q ss_pred CccHhHHHHHHHHHHhCCChhhHHHHHHhcCC----------C-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CC-----
Q 045511 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF----------P-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DV----- 160 (209)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~----- 160 (209)
+....++..+...|...|++++|.+.+++..+ | ....+..+...+...|++++|.+.|.+. ..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 23456899999999999999999999987621 2 3557888899999999999999999888 22
Q ss_pred ---CCC-HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 161 ---KPN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 161 ---~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.|+ ..++..+...+...|++++|.+.+....+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333 357888889999999999999999988764
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.93 E-value=1.5e-08 Score=80.17 Aligned_cols=187 Identities=7% Similarity=-0.089 Sum_probs=147.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC-----cccHHHHHHHHHcCCCccchHHHHHHhhhC----CCCC-CHHHHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ-----PHILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSSY-NHYTFTQALKAC 76 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~ll~~~ 76 (209)
..++.+.|...+.++.+.....++ ..+++.+-..+...|++++|...|++..+. +-.+ ...++..+-..+
T Consensus 155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 678888889899998888766655 267888889999999999999999888653 2111 124788888899
Q ss_pred hccccHHHHHHHHHHHHHh----cc-CccHhHHHHHHHHHHhCCChhhHHHHHHhcC-------CCc-HhHHHHHHHHHH
Q 045511 77 SLAHAHQKGLEIHAHVIKY----GH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-------FPD-VVTWTTIISGLS 143 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~-~~~~~~li~~~~ 143 (209)
...|++++|.+.++...+. +. +....++..+-..|.+.|++++|.+.+++.. .+. ...++.+-..+.
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988763 22 3346789999999999999999999998762 222 234567778888
Q ss_pred hCCC---hHHHHHHHhhCCCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 144 KCGF---HKEAIDMFCGIDVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 144 ~~g~---~~~a~~~~~~m~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
..|+ +++|+.++.+.+..|+. ..+..+-..|...|++++|.+.+....+.
T Consensus 315 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888 88999999988444444 46778888999999999999999977554
No 62
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.91 E-value=6e-08 Score=80.14 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=134.9
Q ss_pred cchHhHHHHHHHHhhCC-CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH--HHHHHHHHHHhccccHHHHHHHH
Q 045511 13 LSFKQLNQIHAQIIKIP-QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH--YTFTQALKACSLAHAHQKGLEIH 89 (209)
Q Consensus 13 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~ 89 (209)
++...+....+. ..| +...|..+...+.+.|++++|..+|++..+. .|+. ..|......+.+.|+++.|.++|
T Consensus 304 ~A~~~~~~Al~~--~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 304 EAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHTTT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 455555554431 234 4588999999999999999999999999984 4543 47888899899999999999999
Q ss_pred HHHHHhccCccHhHHHHHH-HHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CC---C
Q 045511 90 AHVIKYGHLHDIFIQNSLL-HFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DV---K 161 (209)
Q Consensus 90 ~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~---~ 161 (209)
+...+.. +.+...|-... -.+...|+.++|.++|+... ..+...|..++..+.+.|+.++|..+|.+. .. .
T Consensus 380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 9988753 22233332222 22346899999999999773 235788999999999999999999999998 22 3
Q ss_pred CC--HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 PN--ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|+ ...|...+......|+.+.+..+..++.+.
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 347888888888899999999999887665
No 63
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=1.1e-07 Score=72.65 Aligned_cols=183 Identities=8% Similarity=-0.093 Sum_probs=129.3
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC----cccHHHHHHHHHcCCCccchHHHHHHhhhC----CCCC-CHHHHHHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ----PHILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSSY-NHYTFTQALKACS 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~ll~~~~ 77 (209)
..++.++|...+.+..+......+ ..+|+.+-..+.+.|++++|...|++..+. |-.+ -..+|..+-..+.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 567788888888888777544333 368889999999999999999998887652 2111 1357888888888
Q ss_pred cc-ccHHHHHHHHHHHHHhccCc-c----HhHHHHHHHHHHhCCChhhHHHHHHhcC--CCc---H-----hHHHHHHHH
Q 045511 78 LA-HAHQKGLEIHAHVIKYGHLH-D----IFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD---V-----VTWTTIISG 141 (209)
Q Consensus 78 ~~-~~~~~a~~~~~~m~~~g~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~---~-----~~~~~li~~ 141 (209)
.. |++++|...|+...+..... + ..+++.+-..|.+.|++++|...|++.. .|+ . ..|..+..+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 86 99999999998887643211 1 3578889999999999999999998872 121 1 156777788
Q ss_pred HHhCCChHHHHHHHhhC-CCCCCHH------hHHHHHHHhc--cccchhHHHHHHHH
Q 045511 142 LSKCGFHKEAIDMFCGI-DVKPNAN------TLVSVLSACS--SLGSRKLGKAIHAH 189 (209)
Q Consensus 142 ~~~~g~~~~a~~~~~~m-~~~p~~~------t~~~li~~~~--~~g~~~~a~~~~~~ 189 (209)
+...|++++|...|++. .+.|+.. .+..++.++. ..+++++|...|+.
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 88999999999999988 6666543 3445566664 34556666666543
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.85 E-value=3e-07 Score=75.92 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=128.9
Q ss_pred CcccHHHHHHHHHc-------CCCcc-------chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 30 QPHILNTLLKLLTQ-------SSTPQ-------NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 30 ~~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..+...+.+.|++++|.++|+...+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 45788888887775 79987 89999999886323345788999999999999999999999999985
Q ss_pred ccCcc--HhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHH-HHHHhCCChHHHHHHHhhC-CCCC-CHHhH
Q 045511 96 GHLHD--IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTII-SGLSKCGFHKEAIDMFCGI-DVKP-NANTL 167 (209)
Q Consensus 96 g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li-~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~ 167 (209)
.|+ ...|..+...+.+.|++++|.++|++..+ | +...|-... ..+...|++++|..+|.+. ...| +...+
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 454 35899999999999999999999998733 2 222222211 2234689999999999987 5556 46788
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 168 VSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
..++....+.|+.++|..+|+...+.+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999988764
No 65
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.84 E-value=1.4e-07 Score=75.20 Aligned_cols=180 Identities=8% Similarity=0.021 Sum_probs=144.7
Q ss_pred hccC-CCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHH
Q 045511 7 KSLK-PTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 85 (209)
+.++ .++|...+.++.+..+ .+...|+.+-..+.+.|++++|...|++..+..- -+...|..+-.++.+.|++++|
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTH
T ss_pred HcccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHH
Confidence 5565 7788888877777532 2558999999999999999999999999998642 3678899999999999999999
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHh-CCChhhH-----HHHHHhcC---CCcHhHHHHHHHHHHhCC--ChHHHHHH
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVT-VKDIFSA-----HQIFNSVV---FPDVVTWTTIISGLSKCG--FHKEAIDM 154 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~a~~~ 154 (209)
.+.++..++.. +-+...|+.+-..+.+ .|..++| .+.|++.. ..+...|+.+-..+...| ++++|++.
T Consensus 220 l~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 220 LQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 99999999876 4578899999999999 6766887 46776652 345778999888898888 68999998
Q ss_pred HhhCCCCC-CHHhHHHHHHHhcccc--------c-hhHHHHHHHHH
Q 045511 155 FCGIDVKP-NANTLVSVLSACSSLG--------S-RKLGKAIHAHS 190 (209)
Q Consensus 155 ~~~m~~~p-~~~t~~~li~~~~~~g--------~-~~~a~~~~~~~ 190 (209)
+.++...| +...+..+...+.+.| + .++|.++++.+
T Consensus 299 ~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 299 LLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 88873344 4567888888888764 3 58899999887
No 66
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.84 E-value=8.4e-08 Score=75.80 Aligned_cols=188 Identities=10% Similarity=-0.034 Sum_probs=144.7
Q ss_pred ch-hccCCCcchHhHHHHHHHHhhCCC-----cccHHHHHHHHHcCCCccchHHHHHHhhhC----CCCC-CHHHHHHHH
Q 045511 5 GL-KSLKPTLSFKQLNQIHAQIIKIPQ-----PHILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSSY-NHYTFTQAL 73 (209)
Q Consensus 5 ~~-~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~ll 73 (209)
++ ..++.+.|...+.++.+.+...++ ..+++.+-..+...|++++|...|++..+. |-.+ ...++..+-
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 678888889899998888766554 267888889999999999999999887652 2111 235677788
Q ss_pred HHHhccccHHHHHHHHHHHHHh----ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC-------CCc-HhHHHHHHHH
Q 045511 74 KACSLAHAHQKGLEIHAHVIKY----GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-------FPD-VVTWTTIISG 141 (209)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~-~~~~~~li~~ 141 (209)
..+...|++++|.+.++...+. +.+....++..+-..|.+.|++++|...+++.. .+. ...++.+-..
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999888762 223347788999999999999999999998761 222 3456666677
Q ss_pred HHhCCC---hHHHHHHHhhCCCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 142 LSKCGF---HKEAIDMFCGIDVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 142 ~~~~g~---~~~a~~~~~~m~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
+...++ +++|+..+.+.+..|+. ..+..+-..|...|++++|...+....+
T Consensus 310 y~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777788 88899999887444444 4667788889999999999999987644
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=1.1e-08 Score=81.36 Aligned_cols=187 Identities=10% Similarity=-0.049 Sum_probs=120.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC----cccHHHHHHHHHcCCCccchHHHHHHhhhC----C-CCCCHHHHHHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ----PHILNTLLKLLTQSSTPQNAIPLYNKMLNC----P-SSYNHYTFTQALKACS 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g-~~p~~~t~~~ll~~~~ 77 (209)
..++.++|...+.++.+......+ ...+..+-..+...|++++|...+++..+. + .+....++..+-..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 98 YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 556666677666666665433222 256667777777777877777777766542 1 1112346666677777
Q ss_pred cccc-----------------HHHHHHHHHHHHHhc----c-CccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-----C
Q 045511 78 LAHA-----------------HQKGLEIHAHVIKYG----H-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----P 130 (209)
Q Consensus 78 ~~~~-----------------~~~a~~~~~~m~~~g----~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~ 130 (209)
..|+ ++.|.+.++...+.. - .....++..+-..|...|++++|.+.+++..+ .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 777777776654321 1 11234677777778888888888888776621 1
Q ss_pred c----HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC-------CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 131 D----VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP-------NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 131 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-------~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+ ...+..+...|...|++++|...|++. ...| ...++..+-..+...|++++|.+.++...+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 236777778888888888888888776 2111 1356677777777888888888888766443
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.83 E-value=7.4e-08 Score=82.66 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=130.3
Q ss_pred hcch-hccCCCcchHhHHHHHHHHhhCCC-cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhcc
Q 045511 3 VNGL-KSLKPTLSFKQLNQIHAQIIKIPQ-PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLA 79 (209)
Q Consensus 3 i~~~-~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~ 79 (209)
..++ +.|+.++|.+.+.++.+.. |+ ..+|+.+-..+.+.|++++|...|++..+.+ | +...|..+-.++.+.
T Consensus 16 G~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 16 ANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 3456 7889999999998888763 44 5899999999999999999999999998853 4 468899999999999
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
|++++|.+.|+...+.. +-+...|+.+-..|.+.|++++|.+.|++.. .| +...|..+...|...|++++|.+.|+
T Consensus 91 g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 99999999999998865 4457899999999999999999999999873 34 57889999999999999999999888
Q ss_pred hC
Q 045511 157 GI 158 (209)
Q Consensus 157 ~m 158 (209)
+.
T Consensus 170 ka 171 (723)
T 4gyw_A 170 KL 171 (723)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 69
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=1.7e-07 Score=72.14 Aligned_cols=143 Identities=12% Similarity=0.054 Sum_probs=113.0
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc-CccHhHHHHHHHHHHhCCChhhHHHHHHhcC
Q 045511 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 50 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 128 (209)
+...|++....+ .++..++-.+-.++...|++++|.+++......+. .-+...+-.++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888887765 56667777888999999999999999998876653 2366788999999999999999999999984
Q ss_pred --CC-----cHhHHHHHHHH--HHh--CCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 129 --FP-----DVVTWTTIISG--LSK--CGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 129 --~~-----~~~~~~~li~~--~~~--~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.| +..+..-+..+ ... .+++.+|+.+|+++ ...|+..+-..+++++.+.|++++|++.++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35 24555555555 222 33899999999999 76777555566667889999999999999976654
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.81 E-value=1.5e-08 Score=77.55 Aligned_cols=187 Identities=9% Similarity=-0.016 Sum_probs=119.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC----cccHHHHHHHHHcCCCccchHHHHHHhhhCCC-CCC----HHHHHHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ----PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYN----HYTFTQALKACS 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~t~~~ll~~~~ 77 (209)
..++.+++.+.+.+..+.....++ ..++..+-..+...|++++|...+++..+..- .++ ..++..+-..+.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 556666666666666555433222 25666677777777777777777776644210 011 336666777777
Q ss_pred cccc--------------------HHHHHHHHHHHHHh----ccC-ccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---
Q 045511 78 LAHA--------------------HQKGLEIHAHVIKY----GHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--- 129 (209)
Q Consensus 78 ~~~~--------------------~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 129 (209)
..|+ ++.|.+.++...+. +.. ....++..+-..|...|++++|.+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777 77777777665432 111 1234677777778888888888888776521
Q ss_pred --C----cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC---C----HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 130 --P----DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP---N----ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 130 --~----~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p---~----~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+ ...++..+...+...|++++|...+.+. .+.| + ..++..+-..+...|++++|...++...+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 1236777777888888888888888776 1111 1 346677777788888888888888766443
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.80 E-value=2.4e-08 Score=76.36 Aligned_cols=190 Identities=13% Similarity=0.077 Sum_probs=146.7
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCC--------------------ccchHHHHHHhh
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSST--------------------PQNAIPLYNKML 58 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~--------------------~~~a~~l~~~m~ 58 (209)
.++ ..++.++|...+.+..+.....++. .++..+-..+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344 6788889999999988887665553 588888889999999 899998888764
Q ss_pred hC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccC-c----cHhHHHHHHHHHHhCCChhhHHHHHHhcC
Q 045511 59 NC----PSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-H----DIFIQNSLLHFYVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 59 ~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 128 (209)
.. +..| ...++..+-..+...|++++|.+.++...+.... + ...++..+...|...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 2111 2356788888899999999999999887754211 1 13488899999999999999999998762
Q ss_pred C-----Cc----HhHHHHHHHHHHhCCChHHHHHHHhhC-CC------CC-CHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 129 F-----PD----VVTWTTIISGLSKCGFHKEAIDMFCGI-DV------KP-NANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 129 ~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m-~~------~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
+ .+ ..++..+-..|...|++++|...+++. .. .+ ...++..+-..+.+.|++++|...++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 11 567888889999999999999999887 11 11 13477888899999999999999999876
Q ss_pred Hh
Q 045511 192 RN 193 (209)
Q Consensus 192 ~~ 193 (209)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.80 E-value=2.4e-08 Score=78.77 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=121.7
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC----cccHHHHHHHHHcCCC--------------------ccchHHHHHHhhh---
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ----PHILNTLLKLLTQSST--------------------PQNAIPLYNKMLN--- 59 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~--------------------~~~a~~l~~~m~~--- 59 (209)
..|+.++|...+.++.+.....++ ..++..+-..+...|+ +++|...+++..+
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777666554444 2466777777777777 7777777766543
Q ss_pred -CCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc-Ccc----HhHHHHHHHHHHhCCChhhHHHHHHhcCC---
Q 045511 60 -CPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH-LHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--- 129 (209)
Q Consensus 60 -~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 129 (209)
.+..| ...++..+-..+...|++++|.+.++...+... .++ ..++..+-..|...|++++|.+.+++..+
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11111 234566777777777888888888777664421 111 23677777788888888888888776521
Q ss_pred --Cc----HhHHHHHHHHHHhCCChHHHHHHHhhC-CC------CCC-HHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 130 --PD----VVTWTTIISGLSKCGFHKEAIDMFCGI-DV------KPN-ANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 130 --~~----~~~~~~li~~~~~~g~~~~a~~~~~~m-~~------~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
.+ ..++..+-..|...|++++|...|.+. .+ .+. ..++..+-..+...|++++|.+.+....+
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 456777778888888888888887776 11 111 34666777777788888888888776543
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.78 E-value=2.3e-08 Score=79.44 Aligned_cols=190 Identities=12% Similarity=0.039 Sum_probs=145.9
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCC----cccHHHHHHHHHcCCC-----------------ccchHHHHHHhhhC-
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQ----PHILNTLLKLLTQSST-----------------PQNAIPLYNKMLNC- 60 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~-----------------~~~a~~l~~~m~~~- 60 (209)
.++ ..++.++|...+.++.+......+ ..++..+-..+...|+ +++|...+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344 678888888888888877644333 3688888889999999 99999988876542
Q ss_pred ---CCC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccC-cc----HhHHHHHHHHHHhCCChhhHHHHHHhcCC--
Q 045511 61 ---PSS-YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVF-- 129 (209)
Q Consensus 61 ---g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 129 (209)
+-. ....++..+-..+...|++++|.+.++...+.... ++ ..++..+...|...|++++|.+.+++..+
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 111 12357888888899999999999999888764311 11 23888999999999999999999987622
Q ss_pred -------CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CC------CC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 130 -------PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DV------KP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 130 -------~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~------~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
....++..+-..|...|++++|...|++. .+ .+ ...++..+-..+...|++++|.+.+....+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 12567888999999999999999999987 21 11 1347888888999999999999999876544
No 74
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.77 E-value=3.2e-08 Score=78.08 Aligned_cols=187 Identities=9% Similarity=-0.034 Sum_probs=119.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC----cccHHHHHHHHHcCCCccchHHHHHHhhhCCC-CCC----HHHHHHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ----PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYN----HYTFTQALKACS 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~t~~~ll~~~~ 77 (209)
..++.++|...+.++........+ ..++..+-..+...|++++|...+++..+..- .++ ..++..+-..+.
T Consensus 59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 556666666666666555433222 25666677777777777777777776654210 011 346666677777
Q ss_pred cccc--------------------HHHHHHHHHHHHHhc----cCc-cHhHHHHHHHHHHhCCChhhHHHHHHhcCC---
Q 045511 78 LAHA--------------------HQKGLEIHAHVIKYG----HLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--- 129 (209)
Q Consensus 78 ~~~~--------------------~~~a~~~~~~m~~~g----~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 129 (209)
..|+ ++.|.+.++...+.. -.| ...++..+-..|...|++++|.+.+++..+
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 7777 777777776654331 111 234677777778888888888887776521
Q ss_pred --Cc----HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCC---C----HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 130 --PD----VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKP---N----ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 130 --~~----~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p---~----~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
++ ..++..+-..|...|++++|...+.+. .+.| + ..++..+-..+...|++++|.+.+....+.
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 11 336777778888888888888888776 1111 1 356777777788888888888888766543
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.76 E-value=5.3e-08 Score=72.77 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=121.3
Q ss_pred HHcCCCccchHHHHHHhhhC-------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh------cc-CccHhHHHH
Q 045511 41 LTQSSTPQNAIPLYNKMLNC-------PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY------GH-LHDIFIQNS 106 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~ 106 (209)
....|+++.|..+|++..+. +.+....++..+-..+...|++++|.+.++...+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567888888888777652 22334678889999999999999999999988765 22 234568999
Q ss_pred HHHHHHhCCChhhHHHHHHhcC----------CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CC--------CCC-HH
Q 045511 107 LLHFYVTVKDIFSAHQIFNSVV----------FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DV--------KPN-AN 165 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~~~----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~--------~p~-~~ 165 (209)
+-..|...|++++|.+.+.+.. .| ...++..+-..|...|++++|...|.+. .. .|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999998762 12 3567888999999999999999999988 22 343 45
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 166 TLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 166 t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
++..+-..+...|++++|.+.+....+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999999999999999987654
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.76 E-value=4.9e-07 Score=67.59 Aligned_cols=162 Identities=10% Similarity=0.037 Sum_probs=126.9
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhcc-C-ccHhH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN----HYTFTQALKACSLAHAHQKGLEIHAHVIKYGH-L-HDIFI 103 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~-~~~~~ 103 (209)
+...+-.+-..+.+.|++++|...|++..+.. |+ ...+..+-.++.+.|++++|...|+...+... . .....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44666667778889999999999999998854 33 56778888889999999999999999998742 2 22456
Q ss_pred HHHHHHHHHh--------CCChhhHHHHHHhcC--CCc-HhHH-----------------HHHHHHHHhCCChHHHHHHH
Q 045511 104 QNSLLHFYVT--------VKDIFSAHQIFNSVV--FPD-VVTW-----------------TTIISGLSKCGFHKEAIDMF 155 (209)
Q Consensus 104 ~~~ll~~~~~--------~g~~~~a~~~~~~~~--~~~-~~~~-----------------~~li~~~~~~g~~~~a~~~~ 155 (209)
+..+-.++.+ .|++++|.+.|++.. .|+ .... -.+-..|.+.|++++|...|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888888 999999999999873 232 2333 44567889999999999999
Q ss_pred hhC-CCCCC----HHhHHHHHHHhccc----------cchhHHHHHHHHHHHh
Q 045511 156 CGI-DVKPN----ANTLVSVLSACSSL----------GSRKLGKAIHAHSLRN 193 (209)
Q Consensus 156 ~~m-~~~p~----~~t~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 193 (209)
++. ...|+ ...+..+..++... |++++|...+..+.+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 998 55555 34566677777765 8889999999988776
No 77
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=7.9e-07 Score=64.08 Aligned_cols=127 Identities=9% Similarity=-0.050 Sum_probs=107.8
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 112 (209)
.+..+-..+.+.|++++|...|++.. .|+...|..+-..+.+.|++++|.+.|+...+.. +.+...|..+-..|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667788999999999998874 5788999999999999999999999999998875 456789999999999
Q ss_pred hCCChhhHHHHHHhcCC--C-----------------cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH
Q 045511 113 TVKDIFSAHQIFNSVVF--P-----------------DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~--~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
..|++++|.+.|++..+ | ....+..+-..|...|++++|...|... ...|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999988722 1 2367888899999999999999999998 777765
No 78
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=4.3e-07 Score=75.68 Aligned_cols=153 Identities=7% Similarity=-0.138 Sum_probs=108.6
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
.++.++|.+.+.++.+.. +.+...|..+-..+.+.|++++|.+.|++..+.. +-+...+..+-..+...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356677777777776653 1245788888888999999999999999988754 2356788888888899999999999
Q ss_pred HHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC---CChHHHHHHHhhC-CC
Q 045511 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC---GFHKEAIDMFCGI-DV 160 (209)
Q Consensus 88 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m-~~ 160 (209)
.++...+.. +.+...+..+-..|.+.|++++|.+.+++.. ..+...+..+...+... |+.++|.+.|++. ..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999888765 4457788889999999999999999998872 24567888888888888 8999999999888 44
Q ss_pred CCCH
Q 045511 161 KPNA 164 (209)
Q Consensus 161 ~p~~ 164 (209)
.|+.
T Consensus 158 ~p~~ 161 (568)
T 2vsy_A 158 GVGA 161 (568)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 4443
No 79
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.75 E-value=3.2e-07 Score=70.61 Aligned_cols=162 Identities=10% Similarity=-0.007 Sum_probs=122.0
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCc-----cHh
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-----DIF 102 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~ 102 (209)
++..++..+-..+...|++++|++++++-...|- .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 4445556777888889999999999999866553 236688999999999999999999999999775 45 345
Q ss_pred HHHHHHHHH--H--hCCChhhHHHHHHhcCC--CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CC----------CC-CH
Q 045511 103 IQNSLLHFY--V--TVKDIFSAHQIFNSVVF--PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DV----------KP-NA 164 (209)
Q Consensus 103 ~~~~ll~~~--~--~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~----------~p-~~ 164 (209)
+...|..++ . ..++.++|..+|+++.+ |+..+-..++.++.+.|++++|.+.++.+ .. .| |.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 555555552 2 23499999999999943 55444455666899999999999999876 32 24 45
Q ss_pred HhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 165 NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 165 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.+..-+|......|+ .|.++++++.+..
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 667566666666776 7889998887763
No 80
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=1e-06 Score=67.21 Aligned_cols=187 Identities=9% Similarity=-0.055 Sum_probs=137.2
Q ss_pred hhccCCCcchHhHHHHHHHHhhCCCc----------c---cHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCHH----
Q 045511 6 LKSLKPTLSFKQLNQIHAQIIKIPQP----------H---ILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHY---- 67 (209)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~p~~----------~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~---- 67 (209)
+.+|+..-....+..+.+.++..++. . .+...+..+.+.|++++|..++++..+.. ..|+..
T Consensus 37 ~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 37 IESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp HHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 45666666777777777776554321 1 22334677889999999999999988743 233322
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccC-cc----HhHHHHHHHHHHhCCChhhHHHHHHhcC-------C--C-cH
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HD----IFIQNSLLHFYVTVKDIFSAHQIFNSVV-------F--P-DV 132 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~--~-~~ 132 (209)
.|..+...+...++++.|.+.++...+.... ++ ..+++.+-..|...|++++|...|++.. . + ..
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3334666677778999999999999874322 22 3379999999999999999999998763 2 1 23
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC-------CCCCC-HHhHHHHHHHhccccc-hhHHHHHHHHHHH
Q 045511 133 VTWTTIISGLSKCGFHKEAIDMFCGI-------DVKPN-ANTLVSVLSACSSLGS-RKLGKAIHAHSLR 192 (209)
Q Consensus 133 ~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~p~-~~t~~~li~~~~~~g~-~~~a~~~~~~~~~ 192 (209)
.+|..+-..|.+.|++++|...+++. +..+. ..+|..+-.++.+.|+ .++|.+.+....+
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 47888999999999999999999877 22333 4678888888889995 5999998886643
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.6e-07 Score=78.94 Aligned_cols=171 Identities=9% Similarity=-0.029 Sum_probs=133.6
Q ss_pred hhccCCCcchHhHHHHHH-----HHhhCC-CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 045511 6 LKSLKPTLSFKQLNQIHA-----QIIKIP-QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA 79 (209)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~-----~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 79 (209)
+..+++++|.+.+.++.+ .....| +...|..+-..+.+.|++++|...|++..+.+ +-+...|..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 345566666666666651 112223 45788888899999999999999999998854 23567888888899999
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHh
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFC 156 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 156 (209)
|++++|.+.|+...+.. +-+...|..+-..|.+.|++++ .+.|++.. ..+...|..+-..+.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998875 4467889999999999999999 99998873 3467789999999999999999999999
Q ss_pred hC-CCCCCH-HhHHHHHHHhccccc
Q 045511 157 GI-DVKPNA-NTLVSVLSACSSLGS 179 (209)
Q Consensus 157 ~m-~~~p~~-~t~~~li~~~~~~g~ 179 (209)
+. ...|+. ..+..+..++...|+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 99 888875 567777777766554
No 82
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.74 E-value=2.6e-07 Score=83.14 Aligned_cols=162 Identities=13% Similarity=0.047 Sum_probs=95.2
Q ss_pred HhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 16 KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 16 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
..+.++...+....|...|..++..+.+.|++++|.+.|..-++.. ++....+.+..+|++.+++++...+. +
T Consensus 1119 G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred CCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 3344444444444455555556666666666666666665544433 22112223555555555555333221 1
Q ss_pred ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCC-------------
Q 045511 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVK------------- 161 (209)
Q Consensus 96 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~------------- 161 (209)
.++...|..+-..|...|++++|..+|... ..|..+...|++.|+++.|.+.+++- ..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 234455556666777777777777777763 47888888888888888888888764 111
Q ss_pred -------------CCHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 162 -------------PNANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 162 -------------p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
.+...+..+++.|.+.|.+++|..+++...
T Consensus 1265 Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 133455567777777788887777775443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.73 E-value=2.4e-07 Score=67.80 Aligned_cols=157 Identities=9% Similarity=0.000 Sum_probs=124.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|.+.+.++.+..+. ++...+..+-..+.+.|++++|...|++..+... -+...|..+-..+...|++++|.
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~ 96 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEYI 96 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHHHH
Confidence 778888899888888877532 5667777788899999999999999999988542 25578888999999999999999
Q ss_pred HHHHHHHHhccCccH-------hHHHHHHHHHHhCCChhhHHHHHHhcCC--Cc---HhHHHHHHHHHHhCCCh------
Q 045511 87 EIHAHVIKYGHLHDI-------FIQNSLLHFYVTVKDIFSAHQIFNSVVF--PD---VVTWTTIISGLSKCGFH------ 148 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~------ 148 (209)
+.++...+.. +.+. .+|..+-..+...|++++|.+.|++..+ |+ ...|..+-..|...|+.
T Consensus 97 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~ 175 (228)
T 4i17_A 97 ATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKAT 175 (228)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998765 2334 4578888889999999999999999843 44 46777777888777776
Q ss_pred ---------------------HHHHHHHhhC-CCCCCHHh
Q 045511 149 ---------------------KEAIDMFCGI-DVKPNANT 166 (209)
Q Consensus 149 ---------------------~~a~~~~~~m-~~~p~~~t 166 (209)
++|...|.+. .+.|+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 176 PLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp GGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 6677777766 55665543
No 84
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=2e-07 Score=65.70 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=117.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH-
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF- 110 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~- 110 (209)
..+...-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...++...+... +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 445566677888999999999999887643 23567788888889999999999999988876542 44333322211
Q ss_pred HHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC---HHhHHHHHHHhccccchhHH
Q 045511 111 YVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN---ANTLVSVLSACSSLGSRKLG 183 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~---~~t~~~li~~~~~~g~~~~a 183 (209)
+...+...+|.+.+++.. .| +...+..+-..+...|++++|...|.+. ...|+ ...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 223233445677777662 34 5788888999999999999999999998 66765 45788888999999999999
Q ss_pred HHHHHHHHHh
Q 045511 184 KAIHAHSLRN 193 (209)
Q Consensus 184 ~~~~~~~~~~ 193 (209)
...++....+
T Consensus 164 ~~~y~~al~~ 173 (176)
T 2r5s_A 164 ASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 85
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=1.9e-06 Score=62.70 Aligned_cols=175 Identities=10% Similarity=-0.075 Sum_probs=138.2
Q ss_pred CcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc----cHHHHHH
Q 045511 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH----AHQKGLE 87 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~ 87 (209)
.+|.+.+.+..+. -++.++..+-..+...+++++|..+|++..+.| +...+..+-..|.. + +.++|.+
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 3556666666543 577888888889999999999999999999876 45666666666766 6 8999999
Q ss_pred HHHHHHHhccCccHhHHHHHHHHHHh----CCChhhHHHHHHhcCCCc-----HhHHHHHHHHHHh----CCChHHHHHH
Q 045511 88 IHAHVIKYGHLHDIFIQNSLLHFYVT----VKDIFSAHQIFNSVVFPD-----VVTWTTIISGLSK----CGFHKEAIDM 154 (209)
Q Consensus 88 ~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~ 154 (209)
+|+...+.| ++..+..|-..|.. .+++++|.++|.+..+.+ ...+..|-..|.. .+++++|+..
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999998776 67778888888887 889999999999985432 6788888888888 8899999999
Q ss_pred HhhC-CCCCCHHhHHHHHHHhccc-c-----chhHHHHHHHHHHHhccCC
Q 045511 155 FCGI-DVKPNANTLVSVLSACSSL-G-----SRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 155 ~~~m-~~~p~~~t~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~~p 197 (209)
|.+. ...++...+..+-..|... | +.++|...++...+.|...
T Consensus 152 ~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 152 FKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 9998 4444556666666666543 3 8999999999998888544
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.68 E-value=1.7e-06 Score=67.88 Aligned_cols=186 Identities=9% Similarity=-0.004 Sum_probs=132.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC------cccHHHHHHHHHcCCCccchHHHHHHhhhCCCC--C--CHHHHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ------PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS--Y--NHYTFTQALKAC 76 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~--p--~~~t~~~ll~~~ 76 (209)
..|+.++|...+.+..+.....++ ...+..+-..+...|++++|...+++.....-. + ...+|..+-..+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 677888888888888777644322 245666777888999999999999887653211 1 235677778888
Q ss_pred hccccHHHHHHHHHHHHHhccCccH-hHHH-----HHHHHHHhCCChhhHHHHHHhcCCCc-------HhHHHHHHHHHH
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHLHDI-FIQN-----SLLHFYVTVKDIFSAHQIFNSVVFPD-------VVTWTTIISGLS 143 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~ 143 (209)
...|++++|...++...+....++. ..+. .....+...|++++|...+++...++ ...+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 8999999999999988765322221 1121 23344779999999999998884321 224667778899
Q ss_pred hCCChHHHHHHHhhC-------CCCCCHH-hHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 144 KCGFHKEAIDMFCGI-------DVKPNAN-TLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m-------~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
..|++++|...+++. |..++.. ++..+-.++...|+.++|...+....+
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999887 2222332 566667778889999999998886644
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=6e-07 Score=68.47 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=124.9
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH-HHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI-QNSLL 108 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll 108 (209)
+...+-.+-..+.+.|++++|...|++..... +-+...+..+-..+.+.|++++|...++...+.. |+... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 33666777778889999999999999988754 2355778888889999999999999999887654 44432 23333
Q ss_pred HHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC---HHhHHHHHHHhccccchh
Q 045511 109 HFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN---ANTLVSVLSACSSLGSRK 181 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~---~~t~~~li~~~~~~g~~~ 181 (209)
..+...++.++|.+.+++.. ..+...+..+-..|...|++++|...|.+. ...|+ ...+..+...+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 34667788888888887762 346778889999999999999999999998 55565 567888999999999999
Q ss_pred HHHHHHHHHHH
Q 045511 182 LGKAIHAHSLR 192 (209)
Q Consensus 182 ~a~~~~~~~~~ 192 (209)
.|...+++...
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99888876543
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=9.1e-07 Score=64.84 Aligned_cols=162 Identities=11% Similarity=0.028 Sum_probs=110.7
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCC-CC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH--hHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI--FIQNSLL 108 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll 108 (209)
.+-.+...+.+.|++++|...|+++.+... .| ....+..+..++.+.|++++|...|+...+....... ..+-.+-
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344455567778888888888888876431 11 1245666777788888888888888888765422111 1233333
Q ss_pred HHHH------------------hCCChhhHHHHHHhcCC--CcH-hHH-----------------HHHHHHHHhCCChHH
Q 045511 109 HFYV------------------TVKDIFSAHQIFNSVVF--PDV-VTW-----------------TTIISGLSKCGFHKE 150 (209)
Q Consensus 109 ~~~~------------------~~g~~~~a~~~~~~~~~--~~~-~~~-----------------~~li~~~~~~g~~~~ 150 (209)
.++. ..|+.++|...|+++.+ |+. ..+ -.+-..|.+.|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 3333 25678888888888732 332 222 234456788999999
Q ss_pred HHHHHhhC-CCCCCH----HhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 151 AIDMFCGI-DVKPNA----NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 151 a~~~~~~m-~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
|...|+++ ...|+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 166 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 166 VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999998 555654 467788899999999999999999887764
No 89
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=1.9e-07 Score=71.85 Aligned_cols=158 Identities=8% Similarity=-0.042 Sum_probs=85.1
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc---Cc--cHh
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH---LH--DIF 102 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---~~--~~~ 102 (209)
.|+.....|...|++++|...|.+..+. |-.+ -..+|..+-..|.+.|++++|.+.|+...+.-. .+ -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555566666666666666655432 1101 123556666666666666666666665443311 11 134
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCC-------C--cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCC------CCH-H
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVF-------P--DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVK------PNA-N 165 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~------p~~-~ 165 (209)
+++.+-..|.. |++++|.+.|++..+ + ...+++.+-..|.+.|++++|+..|.+. .+. ++. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 55666666666 666666666655411 0 1345566666666666666666666665 111 111 1
Q ss_pred hHHHHHHHhccccchhHHHHHHHHHH
Q 045511 166 TLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 166 t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
++..+...+...|++++|...++...
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444445555566666666666554
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=4.7e-07 Score=65.66 Aligned_cols=120 Identities=4% Similarity=-0.113 Sum_probs=55.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--C-CcHhHHHHHHHHHHhCCC-
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--F-PDVVTWTTIISGLSKCGF- 147 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~g~- 147 (209)
+-..+.+.|++++|...|+...+.. +-+...+..+-..|...|++++|.+.|++.. . .+..+|..+-..|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 4445555556666665555555543 2344555555555555666666665555542 1 234445555444443332
Q ss_pred -hHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 148 -HKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 148 -~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
.+.+...++.. ...|....+...-.++...|++++|...|+...+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 23334444443 2222221222222223344555555555555443
No 91
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=9.2e-07 Score=67.42 Aligned_cols=159 Identities=7% Similarity=-0.034 Sum_probs=119.7
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC-H----HHHHHHHHHHhccccHHHHHHHHHHHHHhcc---Ccc--H
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-H----YTFTQALKACSLAHAHQKGLEIHAHVIKYGH---LHD--I 101 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~ 101 (209)
..+...+..+...|++++|.+.+++..+..-..+ . ..+..+...+...|++++|.+.++...+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4455667788899999999999988776532211 1 2233455566788899999999998875431 111 4
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhcC-----CCc-----HhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-------
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV-----FPD-----VVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN------- 163 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~------- 163 (209)
.+|+.+-..|...|++++|...|++.. .++ ..+|+.+-..|...|++++|...|++. .+.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 589999999999999999999998762 122 258889999999999999999999887 22222
Q ss_pred HHhHHHHHHHhccccchhHH-HHHHHHH
Q 045511 164 ANTLVSVLSACSSLGSRKLG-KAIHAHS 190 (209)
Q Consensus 164 ~~t~~~li~~~~~~g~~~~a-~~~~~~~ 190 (209)
..+|..+-..+.+.|+.++| ...+...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 56788888899999999999 7767654
No 92
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.64 E-value=6.1e-07 Score=70.87 Aligned_cols=182 Identities=6% Similarity=-0.123 Sum_probs=126.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhCC--C---C-CCHHHHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNCP--S---S-YNHYTFTQALKAC 76 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~---~-p~~~t~~~ll~~~ 76 (209)
..++.++|...+.++.+.....|+. .+|..+-..+...|+++.|...+++..+.- . . ....++..+-..+
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 5677778888888777765554543 677888888888899988888888776521 1 1 1235677777888
Q ss_pred hccccHHHHHHHHHHHHHhccC-c----cHhHHHHHHHHHHhCCChhhHHHHHHhcC-------C-C-cHhHHHHHHHHH
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHL-H----DIFIQNSLLHFYVTVKDIFSAHQIFNSVV-------F-P-DVVTWTTIISGL 142 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~-~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~-~-~~~~~~~li~~~ 142 (209)
...|++++|.+.++...+.... + ...++..+-..|...|++++|.+.+++.. . | ...++..+-..|
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 8888999888888877654211 1 12478888888888999988888887652 1 2 245677888888
Q ss_pred HhCCChHHHHHHHhhC-------CCCCCHHhHHHHHHHhccccc---hhHHHHHHH
Q 045511 143 SKCGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLGS---RKLGKAIHA 188 (209)
Q Consensus 143 ~~~g~~~~a~~~~~~m-------~~~p~~~t~~~li~~~~~~g~---~~~a~~~~~ 188 (209)
.+.|++++|...+.+. +-......+..+-..+...|+ +++|..++.
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8889999888888876 111122345667777777887 555555544
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=6.4e-07 Score=74.65 Aligned_cols=149 Identities=8% Similarity=-0.069 Sum_probs=111.8
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHH
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 123 (209)
.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|.+.++...+.. +.+...+..+-..|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887653 2356888889999999999999999999998765 44678899999999999999999999
Q ss_pred HHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccc---cchhHHHHHHHHHHHhc
Q 045511 124 FNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSL---GSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 124 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 194 (209)
+++.. ..+...+..+-..|.+.|++++|.+.|++. ...|+ ...+..+...+... |+.++|.+.++...+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99873 345778999999999999999999999998 55564 56788888888888 99999999999887764
No 94
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.64 E-value=2.2e-06 Score=67.21 Aligned_cols=187 Identities=11% Similarity=-0.043 Sum_probs=134.7
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhC----CCC--CC-HHHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSS--YN-HYTFTQALKA 75 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~--p~-~~t~~~ll~~ 75 (209)
..|+.+++.+.+.+..+.....++. .+++.+-..+...|++++|...+++.... +.. |. ...+..+-..
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 5678888888888888776554544 33566777788899999999999887642 222 32 3456667778
Q ss_pred HhccccHHHHHHHHHHHHHhccC----ccHhHHHHHHHHHHhCCChhhHHHHHHhc----CCCcH-hHHH-----HHHHH
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHL----HDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDV-VTWT-----TIISG 141 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~-~~~~-----~li~~ 141 (209)
+...|++++|...++...+.... ....++..+-..+...|++++|...+++. ..++. ..+. .....
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 88999999999999988765422 12357888888999999999999999876 22221 1222 23344
Q ss_pred HHhCCChHHHHHHHhhC-CCCCC-----HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 142 LSKCGFHKEAIDMFCGI-DVKPN-----ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 142 ~~~~g~~~~a~~~~~~m-~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+...|++++|...+.+. ...|. ...+..+...+...|++++|...++...+.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77899999999999988 33222 234566778888999999999999876544
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.60 E-value=1.6e-06 Score=66.12 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=122.5
Q ss_pred cch-hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcC-CCccchHHHHHHhhhCC----CCCC-HHHHHHH
Q 045511 4 NGL-KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQS-STPQNAIPLYNKMLNCP----SSYN-HYTFTQA 72 (209)
Q Consensus 4 ~~~-~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g----~~p~-~~t~~~l 72 (209)
.++ +.|+.++|...+.+..+......+. .+|+.+-..+.+. |++++|...|++..+.. -.+. ..+|..+
T Consensus 85 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 164 (292)
T 1qqe_A 85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 345 6778888998888888887654443 5788888999996 99999999999887632 1111 3568888
Q ss_pred HHHHhccccHHHHHHHHHHHHHhccCccH------hHHHHHHHHHHhCCChhhHHHHHHhcCC--CcH------hHHHHH
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDI------FIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDV------VTWTTI 138 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~------~~~~~l 138 (209)
-..+.+.|++++|.+.|+...+....... ..|..+..++...|++++|...|++..+ |+. ..+..+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 99999999999999999999876533222 2678888899999999999999999843 321 134455
Q ss_pred HHHHH--hCCChHHHHHHHhhC-CCCCCHHhH
Q 045511 139 ISGLS--KCGFHKEAIDMFCGI-DVKPNANTL 167 (209)
Q Consensus 139 i~~~~--~~g~~~~a~~~~~~m-~~~p~~~t~ 167 (209)
+.++. ..+++++|+..|+.+ .+.|+....
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 66664 456799999999888 777765443
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.59 E-value=1.3e-07 Score=70.75 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=117.4
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC-cccHHHHHHHHHcCCCccchHHHHHHhhhCCC-CCC-HHHHHHHHHHHhc-----
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ-PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SYN-HYTFTQALKACSL----- 78 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~-~~t~~~ll~~~~~----- 78 (209)
+.++.++|...+.++.+..+..|. ...+..+-..+.+.|++++|...|++..+... .|. ...+..+-.++..
T Consensus 27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 678888888888887765433222 36778888889999999999999999988531 122 3456666667777
Q ss_pred ---cccHHHHHHHHHHHHHhccCccHhHH-----------------HHHHHHHHhCCChhhHHHHHHhcC--CCc----H
Q 045511 79 ---AHAHQKGLEIHAHVIKYGHLHDIFIQ-----------------NSLLHFYVTVKDIFSAHQIFNSVV--FPD----V 132 (209)
Q Consensus 79 ---~~~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ll~~~~~~g~~~~a~~~~~~~~--~~~----~ 132 (209)
.|++++|...|+...+.. +.+.... -.+-..|.+.|++++|...|++.. .|+ .
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 185 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWAD 185 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred cccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHH
Confidence 999999999999998865 2223333 455778999999999999999873 233 3
Q ss_pred hHHHHHHHHHHhC----------CChHHHHHHHhhC-CCCCCH
Q 045511 133 VTWTTIISGLSKC----------GFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 133 ~~~~~li~~~~~~----------g~~~~a~~~~~~m-~~~p~~ 164 (209)
..+..+..+|... |++++|...|++. ...|+.
T Consensus 186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 4677777777765 8899999999998 556665
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=8.7e-07 Score=62.15 Aligned_cols=128 Identities=7% Similarity=0.088 Sum_probs=93.4
Q ss_pred HHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH-HHhCCCh--
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF-YVTVKDI-- 117 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~-- 117 (209)
+...|++++|...+++..+.. +.+...|..+-..+...|+++.|...|+...+.. +.+...+..+-.. +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345788888888888877653 2456778888888888999999999998888765 3466777777777 7788888
Q ss_pred hhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHH
Q 045511 118 FSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSV 170 (209)
Q Consensus 118 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~l 170 (209)
++|.+.++... ..+...+..+-..|...|++++|...|.+. ...|+......+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 99999988773 235677888888899999999999999887 556654433333
No 98
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=3.4e-06 Score=60.66 Aligned_cols=122 Identities=11% Similarity=-0.056 Sum_probs=102.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC 145 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 145 (209)
+..+-..+...|++++|.+.|+.. +.|+..+|..+-..|.+.|++++|.+.|++.. ..+...|..+-..|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 444556677889999999999876 46788999999999999999999999999873 34677899999999999
Q ss_pred CChHHHHHHHhhC-CCCC----------------CH-HhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 146 GFHKEAIDMFCGI-DVKP----------------NA-NTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 146 g~~~~a~~~~~~m-~~~p----------------~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
|++++|...|++. ...| +. ..+..+-..+...|++++|.+.+....+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999988 3222 22 577888888999999999999999887664
No 99
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=3.7e-06 Score=57.74 Aligned_cols=123 Identities=9% Similarity=0.007 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSK 144 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 144 (209)
.+..+-..+...|+++.|...|+...+.. +.+..++..+...+...|++++|.+.+++.. ..+...|..+-..+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555566666777776666666543 3345666666667777777777777776652 2345566666777777
Q ss_pred CCChHHHHHHHhhC-CCCCCH-HhH--HHHHHHhccccchhHHHHHHHHHH
Q 045511 145 CGFHKEAIDMFCGI-DVKPNA-NTL--VSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 145 ~g~~~~a~~~~~~m-~~~p~~-~t~--~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
.|++++|...|.+. ...|+. ..+ -.....+...|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777776 434432 233 222333556677777777776543
No 100
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=2.7e-06 Score=55.19 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSK 144 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 144 (209)
.+..+...+...|+++.|.+.++...+.. +.+..++..+...+.+.|++++|..+++++. ..+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233444444444444455555544444431 1233444444444555
Q ss_pred CCChHHHHHHHhhC
Q 045511 145 CGFHKEAIDMFCGI 158 (209)
Q Consensus 145 ~g~~~~a~~~~~~m 158 (209)
.|++++|...|.+.
T Consensus 90 ~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 90 QGDYDEAIEYYQKA 103 (125)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 55555555555444
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=1.2e-06 Score=63.44 Aligned_cols=159 Identities=9% Similarity=0.026 Sum_probs=120.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHH----------------HHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNT----------------LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFT 70 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~----------------li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 70 (209)
+.++.++|...+.++.+..+. +...|.. +-..+.+.|++++|...|++..+.. +-+...+.
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 92 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLE 92 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 678888888888888776433 2345555 8888999999999999999998854 23678899
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC--hhhHHHHHHhcCCCcHhH--HHHHHHHHHhCC
Q 045511 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD--IFSAHQIFNSVVFPDVVT--WTTIISGLSKCG 146 (209)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g 146 (209)
.+-..+...|++++|.+.|+...+.. +.+..+|..+-..|...|+ .+.+...+.....|+... +...-.++...|
T Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 93 ACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc
Confidence 99999999999999999999999875 4467788888888766654 456677777776665433 333344556689
Q ss_pred ChHHHHHHHhhC-CCCCCHHhHHH
Q 045511 147 FHKEAIDMFCGI-DVKPNANTLVS 169 (209)
Q Consensus 147 ~~~~a~~~~~~m-~~~p~~~t~~~ 169 (209)
++++|...|++. .+.|+......
T Consensus 172 ~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 172 RYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998 88998754443
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.53 E-value=2.9e-06 Score=65.15 Aligned_cols=180 Identities=8% Similarity=-0.090 Sum_probs=129.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhC----CCCC-CHHHHHHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNC----PSSY-NHYTFTQALKACS 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~ll~~~~ 77 (209)
..++.++|...+.+..+......+. .+|+.+-..|.+.|++++|...|++..+. |-.. -..++..+-..|.
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4567777777777777776544443 68889999999999999999999886542 2111 2367778888888
Q ss_pred ccccHHHHHHHHHHHHHhccCc-----cHhHHHHHHHHHHhCCChhhHHHHHHhcCC-----Cc----HhHHHHHHHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYGHLH-----DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PD----VVTWTTIISGLS 143 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~ 143 (209)
. |++++|.+.|+...+..... ...+++.+-..|.+.|++++|.+.|++..+ ++ ...+..+...+.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 8 99999999998877543111 146889999999999999999999988732 11 236677778888
Q ss_pred hCCChHHHHHHHhhCCCCCC------HHhHHHHHHHhccccchhHHHHHHH
Q 045511 144 KCGFHKEAIDMFCGIDVKPN------ANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~p~------~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
..|++++|...|++.-..|+ ......++.++ ..|+.+...++.+
T Consensus 207 ~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~ 256 (307)
T 2ifu_A 207 HRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCR 256 (307)
T ss_dssp HTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHh
Confidence 88999999999987522232 12455666666 5677776666443
No 103
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=3.6e-06 Score=54.60 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=89.9
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4678888899999999999999999998754 3467888899999999999999999999998875 4567889999999
Q ss_pred HHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHH
Q 045511 111 YVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGL 142 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~ 142 (209)
|...|++++|.+.|++.. .| +...+..+-..+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999873 23 344444444443
No 104
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.52 E-value=2.5e-06 Score=67.27 Aligned_cols=182 Identities=8% Similarity=-0.071 Sum_probs=120.6
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhC----C-CCC-CHHHHHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNC----P-SSY-NHYTFTQALKAC 76 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g-~~p-~~~t~~~ll~~~ 76 (209)
..++.++|...+.++.+.....++. .++..+-..+...|+++.|...+++..+. + ..+ ...++..+-..+
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 5667777777777777665554543 56777777888888888888888776542 1 111 245677777788
Q ss_pred hccccHHHHHHHHHHHHHhcc----C-ccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-------C-cHhHHHHHHHHHH
Q 045511 77 SLAHAHQKGLEIHAHVIKYGH----L-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-------P-DVVTWTTIISGLS 143 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~----~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~-~~~~~~~li~~~~ 143 (209)
...|+++.|.+.|+...+... . ....+++.+-..|...|++++|.+.|++..+ | ...++..+-..|.
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 888888888888877665321 1 1234677788888888888888888876521 2 2456777778888
Q ss_pred hCCChHHHHHHHhhC-------CCCCCHHhHHHHHHHhccccc---hhHHHHHHH
Q 045511 144 KCGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLGS---RKLGKAIHA 188 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m-------~~~p~~~t~~~li~~~~~~g~---~~~a~~~~~ 188 (209)
+.|++++|...+++. +-+.....+..+-..+...|+ +++|...+.
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 888888888888776 111122345555556666676 455544443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.52 E-value=6.2e-07 Score=63.12 Aligned_cols=146 Identities=10% Similarity=-0.016 Sum_probs=108.8
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHH-HhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA-CSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a 85 (209)
+.++.++|...+.++.+..+ .+...+..+-..+.+.|++++|...|++..... |+...+...... +...+....+
T Consensus 18 ~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a 93 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPE 93 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchH
Confidence 67777788877777766542 355888999999999999999999999987643 444333222111 1222333446
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCc---HhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD---VVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
...++...+.. +.+...+..+-..+...|++++|...|++.. .|+ ...+..+...+...|+.++|...|++
T Consensus 94 ~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 94 LKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 77888877654 3457899999999999999999999999873 343 55888999999999999999988875
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=2.6e-06 Score=58.75 Aligned_cols=99 Identities=7% Similarity=-0.054 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGL 142 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 142 (209)
...+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|.+.|++.. ..+...|..+-.+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456666677788888888888888888765 4567788888888888888888888888772 23466777888888
Q ss_pred HhCCChHHHHHHHhhC-CCCCCHH
Q 045511 143 SKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 143 ~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
...|++++|...|++. ...||..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888887 5566654
No 107
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=1.4e-06 Score=62.09 Aligned_cols=147 Identities=6% Similarity=-0.100 Sum_probs=64.7
Q ss_pred cCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc----c-CccHhHHHHHHHHHHhCCCh
Q 045511 43 QSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG----H-LHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~-~~~~~~~~~ll~~~~~~g~~ 117 (209)
..|++++|.+.++.... ........+..+-..+...|++++|...++...+.. . .....++..+-..|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553332222 111233445555555555555555555555444311 1 11223455555555555555
Q ss_pred hhHHHHHHhcC-----CC-c----HhHHHHHHHHHHhCCChHHHHHHHhhC----CCCCC----HHhHHHHHHHhccccc
Q 045511 118 FSAHQIFNSVV-----FP-D----VVTWTTIISGLSKCGFHKEAIDMFCGI----DVKPN----ANTLVSVLSACSSLGS 179 (209)
Q Consensus 118 ~~a~~~~~~~~-----~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~p~----~~t~~~li~~~~~~g~ 179 (209)
++|.+.+++.. .+ + ...+..+-..+...|++++|...+.+. .-.++ ..++..+-..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 55555554431 01 1 223444455555555555555555444 00011 1223444445555555
Q ss_pred hhHHHHHHHHH
Q 045511 180 RKLGKAIHAHS 190 (209)
Q Consensus 180 ~~~a~~~~~~~ 190 (209)
+++|.+.+...
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 108
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=3.1e-06 Score=55.37 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+-..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444445555555555555555544432 1233444444444455555555555555444432 22334444444444
Q ss_pred HhCCChhhHHHHHHhc
Q 045511 112 VTVKDIFSAHQIFNSV 127 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~ 127 (209)
.+.|++++|.+.|++.
T Consensus 91 ~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 5555555555444443
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.49 E-value=1e-06 Score=75.23 Aligned_cols=149 Identities=12% Similarity=-0.035 Sum_probs=126.6
Q ss_pred HcCCCccchHHHHHHhh--------hCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh
Q 045511 42 TQSSTPQNAIPLYNKML--------NCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT 113 (209)
Q Consensus 42 ~~~g~~~~a~~l~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 113 (209)
...|++++|.+.+++.. +. -+.+...+..+-.++.+.|++++|.+.|+...+.. +.+...|..+-..|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999987 32 23456778888899999999999999999998875 4567899999999999
Q ss_pred CCChhhHHHHHHhcC--C-CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHH
Q 045511 114 VKDIFSAHQIFNSVV--F-PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 114 ~g~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
.|++++|.+.|++.. . .+...|..+-..|.+.|++++ .+.|++. ...|+ ...+..+-.++.+.|++++|.+.++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999873 2 356788899999999999999 9999988 66665 4678888999999999999999998
Q ss_pred HHHHh
Q 045511 189 HSLRN 193 (209)
Q Consensus 189 ~~~~~ 193 (209)
...+.
T Consensus 559 ~al~l 563 (681)
T 2pzi_A 559 EVPPT 563 (681)
T ss_dssp TSCTT
T ss_pred hhccc
Confidence 76543
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.46 E-value=1.5e-06 Score=66.29 Aligned_cols=146 Identities=10% Similarity=-0.079 Sum_probs=116.7
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHH-HHHhccccHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQAL-KACSLAHAHQKG 85 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a 85 (209)
+.|+.++|...+.++.+..+ .+...+..+-..+.+.|++++|...+++..... |+........ ..+.+.++.+.+
T Consensus 129 ~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a 204 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTPE 204 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCHH
T ss_pred hCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcccCcc
Confidence 67888888888888877642 245788999999999999999999999987753 5544332222 235677788888
Q ss_pred HHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCc---HhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 86 LEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD---VVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 86 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
...++...+.. +.+...+..+-..|...|++++|...|.+.. .|+ ...+..+...|...|+.++|...|++
T Consensus 205 ~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 205 IQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 88898888775 5578899999999999999999999999983 243 66899999999999999999888765
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=5.9e-06 Score=56.69 Aligned_cols=125 Identities=14% Similarity=-0.014 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..|..+-..+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++...+.. +.+...+..+-..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 567778888899999999999999988753 2367888888999999999999999999998875 45678899999999
Q ss_pred HhCCChhhHHHHHHhcC---CCcHhHHHH--HHHHHHhCCChHHHHHHHhhC
Q 045511 112 VTVKDIFSAHQIFNSVV---FPDVVTWTT--IISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~---~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m 158 (209)
...|++++|.+.|++.. ..+...+.. ....+...|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999998873 224444433 344477789999998888764
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=9.3e-06 Score=53.98 Aligned_cols=95 Identities=6% Similarity=-0.020 Sum_probs=49.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC 145 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 145 (209)
+...=..+.+.|++++|.+.|+...+.. +.+..+|..+-.+|.+.|++++|.+.|++.. ..+...|..+-.+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444555555555555555555443 3344555555555555555555555555541 22344555555555555
Q ss_pred CChHHHHHHHhhC-CCCCCH
Q 045511 146 GFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 146 g~~~~a~~~~~~m-~~~p~~ 164 (209)
|++++|.+.|++. .+.|+.
T Consensus 95 ~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHHCcCC
Confidence 5555555555555 444443
No 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=7.2e-06 Score=53.96 Aligned_cols=112 Identities=9% Similarity=-0.039 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..|..+-..+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++...+.. +.+...+..+-..|
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 667777777778888888888888777643 2356677777777777788888888887777654 33566777777777
Q ss_pred HhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhC
Q 045511 112 VTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKC 145 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~ 145 (209)
.+.|++++|.+.|++.. .| +...+..+-..+...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 77777777777777652 22 234444444444433
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.42 E-value=4.4e-06 Score=61.11 Aligned_cols=149 Identities=8% Similarity=0.044 Sum_probs=111.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC-cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHH----HHHHHHHHHh----
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ-PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY----TFTQALKACS---- 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----t~~~ll~~~~---- 77 (209)
+.++.++|...+.++.+..+..|. ...+..+...+.+.|++++|...|++..+.. |+.. .+-.+-.++.
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMALDD 93 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhhhh
Confidence 788889999999998887544333 2577888899999999999999999998754 3321 2322223332
Q ss_pred --------------ccccHHHHHHHHHHHHHhccCccHhHH-----------------HHHHHHHHhCCChhhHHHHHHh
Q 045511 78 --------------LAHAHQKGLEIHAHVIKYGHLHDIFIQ-----------------NSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 78 --------------~~~~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
..|+.++|...|+.+.+.. +-+...+ -.+-..|.+.|++++|...|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 3678999999999998764 2222222 2345578899999999999998
Q ss_pred cC--CCc----HhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 127 VV--FPD----VVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 127 ~~--~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+. .|+ ...+..+..+|.+.|++++|.+.++.+
T Consensus 173 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 173 MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 83 233 256888899999999999999999987
No 115
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.39 E-value=1.7e-05 Score=71.72 Aligned_cols=147 Identities=11% Similarity=0.125 Sum_probs=122.0
Q ss_pred hCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHH
Q 045511 27 KIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106 (209)
Q Consensus 27 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 106 (209)
..-+..+|..+-.++.+.|++++|.+-|.+- -|...|.-+..+|.+.|+++++.+.+...++.. +++...+.
T Consensus 1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~ 1172 (1630)
T 1xi4_A 1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETE 1172 (1630)
T ss_pred hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHH
Confidence 3345689999999999999999999999664 467888999999999999999999998776654 44445556
Q ss_pred HHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHH
Q 045511 107 LLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
+..+|++.+++++..... ..++...|..+-..|...|++++|..+|... ..|..+...+.+.|+++.|.+.
T Consensus 1173 LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999998755554 4567777888889999999999999999984 4888899999999999999888
Q ss_pred HHHH
Q 045511 187 HAHS 190 (209)
Q Consensus 187 ~~~~ 190 (209)
++..
T Consensus 1244 arKA 1247 (1630)
T 1xi4_A 1244 ARKA 1247 (1630)
T ss_pred HHHh
Confidence 7654
No 116
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=9.4e-06 Score=53.39 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHH
Q 045511 63 SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTII 139 (209)
Q Consensus 63 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li 139 (209)
+.+...+..+-..+.+.|++++|...|+...+.. +.+..++..+-..|...|++++|.+.+++.. ..+...+..+-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3455667777777778888888888888777653 3356677777778888888888888877762 23566777777
Q ss_pred HHHHhCCChHHHHHHHhhC-CCCCC
Q 045511 140 SGLSKCGFHKEAIDMFCGI-DVKPN 163 (209)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m-~~~p~ 163 (209)
..+.+.|++++|.+.|.+. ...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 7778888888888887776 44443
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=1.3e-05 Score=52.30 Aligned_cols=116 Identities=11% Similarity=0.035 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHH
Q 045511 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIIS 140 (209)
Q Consensus 64 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~ 140 (209)
.+...+..+-..+...|+++.|.+.++...+.. +.+...+..+...+...|++++|.+.++... ..+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345677888888999999999999999998764 4567889999999999999999999998873 345778888999
Q ss_pred HHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccch
Q 045511 141 GLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSR 180 (209)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~ 180 (209)
.+...|++++|...|.+. ...| +...+..+...+...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999998 5556 455677777777666654
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.36 E-value=1.1e-06 Score=60.38 Aligned_cols=77 Identities=16% Similarity=-0.009 Sum_probs=31.7
Q ss_pred HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChH
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHK 149 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~ 149 (209)
-..|.+.|++++|.+.|+...+.. +-+..+|..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|+++
T Consensus 38 a~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 38 AKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 333444444444444444444332 2233344444444444444444444444431 11 2334444444444444443
Q ss_pred H
Q 045511 150 E 150 (209)
Q Consensus 150 ~ 150 (209)
+
T Consensus 117 ~ 117 (150)
T 4ga2_A 117 G 117 (150)
T ss_dssp S
T ss_pred H
Confidence 3
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=2.8e-06 Score=58.20 Aligned_cols=97 Identities=8% Similarity=-0.139 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGL 142 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 142 (209)
...+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|.+.|++.. ..+...|..+-.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556666777778888888877777654 4466677777777778888888888877762 23456667777777
Q ss_pred HhCCChHHHHHHHhhC-CCCCC
Q 045511 143 SKCGFHKEAIDMFCGI-DVKPN 163 (209)
Q Consensus 143 ~~~g~~~~a~~~~~~m-~~~p~ 163 (209)
...|++++|...|... .+.|+
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHCcC
Confidence 7888888888777776 44444
No 120
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.36 E-value=2.5e-05 Score=66.55 Aligned_cols=185 Identities=10% Similarity=-0.001 Sum_probs=133.5
Q ss_pred hccCCCcch-HhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCC---------CCCC-----------
Q 045511 7 KSLKPTLSF-KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCP---------SSYN----------- 65 (209)
Q Consensus 7 ~~~~~~~a~-~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---------~~p~----------- 65 (209)
+.++.+++. +.+....... +.+...|-.++...-+.|++++|.++|+++.+.. -.|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 456667775 7777776532 1344556778888888999999999999987631 0132
Q ss_pred -HHHHHHHHHHHhccccHHHHHHHHHHHHHh-ccCccHhHHHHHHHHHHhC-CChhhHHHHHHhcCC---CcHhHHHHHH
Q 045511 66 -HYTFTQALKACSLAHAHQKGLEIHAHVIKY-GHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSVVF---PDVVTWTTII 139 (209)
Q Consensus 66 -~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~---~~~~~~~~li 139 (209)
...|...+....+.|.++.|..+|+...+. + .....+|-.....-.+. ++.+.|.++|+...+ .+...|...+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 236788888888889999999999998876 3 12233333322222333 458999999988732 3556678888
Q ss_pred HHHHhCCChHHHHHHHhhC-CCCC----CHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 140 SGLSKCGFHKEAIDMFCGI-DVKP----NANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m-~~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
......|+.+.|..+|.+. ...| ....|...++.-.+.|+.+.+..+..++.+.-
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888899999999999987 4444 23578888888889999999999999988773
No 121
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.35 E-value=1e-05 Score=65.27 Aligned_cols=168 Identities=13% Similarity=-0.014 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC-HHHHHHHHHHHhcc-------------------ccHHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN-HYTFTQALKACSLA-------------------HAHQKGLEIHAH 91 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~-------------------~~~~~a~~~~~~ 91 (209)
.++..+-..+.+.|++++|...+++..+.. |+ ..++..+-..+... +..+.|...++.
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555566666666666666666655432 22 23333332222111 123344444444
Q ss_pred HHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc--CCCcHh----HHHHHH-HHHHhCCChHHHHHHHhhC-CCC--
Q 045511 92 VIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVV----TWTTII-SGLSKCGFHKEAIDMFCGI-DVK-- 161 (209)
Q Consensus 92 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~----~~~~li-~~~~~~g~~~~a~~~~~~m-~~~-- 161 (209)
..+.. +.+..++..+-..|...|++++|.+.|++. ..++.. .+..+- -.+...|++++|+..|.+. .+.
T Consensus 326 a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 326 ADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 44432 233445666777777788888888888765 222221 122222 1234567777777777654 222
Q ss_pred ----------------------C-CHHhHHHHHHHhccccchhHHHHHHHHHHHhc-cCCCchhH
Q 045511 162 ----------------------P-NANTLVSVLSACSSLGSRKLGKAIHAHSLRNL-NENNIILD 202 (209)
Q Consensus 162 ----------------------p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~ 202 (209)
| +..+|..+-..+...|++++|.+.|+...+.+ ..|+..+|
T Consensus 405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2 34567777777777788888888887776654 34554433
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.34 E-value=3.6e-06 Score=57.75 Aligned_cols=136 Identities=7% Similarity=-0.095 Sum_probs=99.9
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
.+..+++.+.+.+.....+. +...+-.+-..|.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|..
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 44444444444444332211 23566678888999999999999999998854 2366889999999999999999999
Q ss_pred HHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHH-HHhc---CCCcHhHHHHHHHHHHhCCC
Q 045511 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI-FNSV---VFPDVVTWTTIISGLSKCGF 147 (209)
Q Consensus 88 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~---~~~~~~~~~~li~~~~~~g~ 147 (209)
.|+...+.. +-+..+|..+-..|.+.|+.++|.+. +++. ...+..+|+..-..+...|+
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999998865 44678999999999999999876665 4654 23356677777666666654
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.34 E-value=4e-06 Score=63.81 Aligned_cols=152 Identities=10% Similarity=0.004 Sum_probs=109.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhCCCC-CC----HHHHHHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-YN----HYTFTQALKACS 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~----~~t~~~ll~~~~ 77 (209)
+.++.+++.+.+.+........|+. ..|..+...+...|++++|...|++..+.... ++ ..+|+.+-..|.
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 5566666666666665533222222 23345666677788999999999999874322 22 236889999999
Q ss_pred ccccHHHHHHHHHHHHHh-----ccCcc-HhHHHHHHHHHHhCCChhhHHHHHHhcCC--------C-cHhHHHHHHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKY-----GHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--------P-DVVTWTTIISGL 142 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~-----g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~-~~~~~~~li~~~ 142 (209)
..|+++.|.+.|+...+. +..+. ..++..+-..|.+.|++++|.+.+++..+ + -..+|..+-..|
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 999999999999988842 11222 34889999999999999999999987621 1 156788888999
Q ss_pred HhCCC-hHHHHHHHhhC
Q 045511 143 SKCGF-HKEAIDMFCGI 158 (209)
Q Consensus 143 ~~~g~-~~~a~~~~~~m 158 (209)
.+.|+ +++|.+.|++.
T Consensus 247 ~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHTTCCHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHH
Confidence 99995 68888888774
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=2e-05 Score=61.41 Aligned_cols=145 Identities=8% Similarity=-0.020 Sum_probs=108.6
Q ss_pred CCccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--------------HhHHHHHHH
Q 045511 45 STPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--------------IFIQNSLLH 109 (209)
Q Consensus 45 g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~ll~ 109 (209)
+++++|...|+..... .| +...|..+-..+.+.|++++|...|+...+...... ..+|..+-.
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555554433321 13 356777788888889999999999998887653221 578999999
Q ss_pred HHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHH-
Q 045511 110 FYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLG- 183 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a- 183 (209)
+|.+.|++++|...+++.. ..+...|..+-.+|...|++++|...|++. .+.|+ ...+..+-..+.+.|+.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998873 346778889999999999999999999988 66665 45677788888888998888
Q ss_pred HHHHHHHH
Q 045511 184 KAIHAHSL 191 (209)
Q Consensus 184 ~~~~~~~~ 191 (209)
..++..|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555543
No 125
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=2.8e-05 Score=49.70 Aligned_cols=89 Identities=12% Similarity=-0.029 Sum_probs=41.6
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC 145 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 145 (209)
+..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|...+++.. ..+...+..+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444444455555555554444432 2234444444445555555555555554431 12334444444555555
Q ss_pred CChHHHHHHHhhC
Q 045511 146 GFHKEAIDMFCGI 158 (209)
Q Consensus 146 g~~~~a~~~~~~m 158 (209)
|++++|.+.|.+.
T Consensus 86 ~~~~~A~~~~~~~ 98 (118)
T 1elw_A 86 NRFEEAKRTYEEG 98 (118)
T ss_dssp TCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5555555555544
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=7.1e-06 Score=52.18 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVI 93 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 93 (209)
|..+-..+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++...
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333444444444444444433321 1122333333333334444444444443333
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.30 E-value=5.9e-05 Score=54.63 Aligned_cols=139 Identities=11% Similarity=-0.056 Sum_probs=113.4
Q ss_pred cchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC----ChhhHHHH
Q 045511 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK----DIFSAHQI 123 (209)
Q Consensus 48 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~ 123 (209)
.+|.+.|++..+.| +...+..+-..+...+++++|.++|+...+.| ++..+..|-..|.. + +.++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46888898888875 56777778888888999999999999998876 56777778888887 6 89999999
Q ss_pred HHhcCC-CcHhHHHHHHHHHHh----CCChHHHHHHHhhC-CCCCC---HHhHHHHHHHhcc----ccchhHHHHHHHHH
Q 045511 124 FNSVVF-PDVVTWTTIISGLSK----CGFHKEAIDMFCGI-DVKPN---ANTLVSVLSACSS----LGSRKLGKAIHAHS 190 (209)
Q Consensus 124 ~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m-~~~p~---~~t~~~li~~~~~----~g~~~~a~~~~~~~ 190 (209)
|.+..+ .+...+..|-..|.. .+++++|+..|.+. ...|+ ...+..+-..|.. .++.++|...|...
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998744 466777778778877 88999999999998 55553 6677777777776 77899999999988
Q ss_pred HHh
Q 045511 191 LRN 193 (209)
Q Consensus 191 ~~~ 193 (209)
.+.
T Consensus 156 ~~~ 158 (212)
T 3rjv_A 156 SSL 158 (212)
T ss_dssp HHT
T ss_pred HHc
Confidence 776
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=8.8e-06 Score=51.74 Aligned_cols=90 Identities=11% Similarity=0.074 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC---HHhHHHHHHHhcc
Q 045511 104 QNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN---ANTLVSVLSACSS 176 (209)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~---~~t~~~li~~~~~ 176 (209)
+..+-..+...|++++|...|++.. ..+...|..+-..+...|++++|...|.+. ...|+ ...+..+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 3334444444444444444444331 123334444444444555555555555444 22332 3444444445555
Q ss_pred c-cchhHHHHHHHHHHHh
Q 045511 177 L-GSRKLGKAIHAHSLRN 193 (209)
Q Consensus 177 ~-g~~~~a~~~~~~~~~~ 193 (209)
. |++++|.+.+....+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CSSCSHHHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHhhc
Confidence 5 5555555555544433
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=7.9e-06 Score=53.47 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC------Cc----HhHHHHH
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF------PD----VVTWTTI 138 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~----~~~~~~l 138 (209)
|..+-..+...|+++.|...|+...+.. +.+...+..+...|...|++++|...+++... ++ ...|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444445555555555555554433 23344455555555555555555555554411 11 3445555
Q ss_pred HHHHHhCCChHHHHHHHhhC-CCCCCHH
Q 045511 139 ISGLSKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
...+...|++++|.+.|.+. ...|+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 113 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPD 113 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHH
Confidence 55555566666666665555 3334433
No 130
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.30 E-value=4.7e-05 Score=61.37 Aligned_cols=186 Identities=6% Similarity=-0.083 Sum_probs=129.1
Q ss_pred hccCCCcchHhHHHHHHHHhh------CCC-cccHHHHHHHHHcCCCccchHHHHHHhhhC-----C-CCC-CHHHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIK------IPQ-PHILNTLLKLLTQSSTPQNAIPLYNKMLNC-----P-SSY-NHYTFTQA 72 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~------~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p-~~~t~~~l 72 (209)
..|+.++|.+.+.+..+.... .|+ ..+|+.+-..|...|++++|...+++..+. + ..+ ...+|...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 678899999999888776422 132 278999999999999999999999887541 1 112 23455554
Q ss_pred HHHHhc--cccHHHHHHHHHHHHHhccCccHhHHHHHHHH---HHhCCChhhHHHHHHhc---CCCcHhHHHHHHHHHHh
Q 045511 73 LKACSL--AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF---YVTVKDIFSAHQIFNSV---VFPDVVTWTTIISGLSK 144 (209)
Q Consensus 73 l~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~ 144 (209)
-.++.+ .+++++|.+.|+...+.. +-++..+..+... +...++.++|.+.+++. ...+...+..+-..+..
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 444443 457899999999988764 2234444444443 45668888888888765 23455566555555544
Q ss_pred ----CCChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 145 ----CGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 145 ----~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.|++++|.+.+.+. ...|+ ..++..+-..+...|++++|.+.+....+.
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 46778899999887 44554 467888899999999999999999988765
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2e-05 Score=51.87 Aligned_cols=90 Identities=9% Similarity=-0.084 Sum_probs=52.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSK 144 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 144 (209)
.|...-..+.+.|++++|.+.|+...+.. +.+...|..+-.+|.+.|++++|.+.+++.. ..+...|..+-.++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444455556666666666666655543 3345566666666666666666666666552 2234555566666666
Q ss_pred CCChHHHHHHHhhC
Q 045511 145 CGFHKEAIDMFCGI 158 (209)
Q Consensus 145 ~g~~~~a~~~~~~m 158 (209)
.|++++|...|.+.
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 66666666666655
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=1.4e-05 Score=62.31 Aligned_cols=128 Identities=10% Similarity=0.028 Sum_probs=108.0
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC--------------HHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN--------------HYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
+...|..+-..+.+.|++++|...|++..+..-... ...|..+-.++.+.|++++|...++..++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788888999999999999999999987542211 488999999999999999999999999987
Q ss_pred ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHH-HHHHhhC
Q 045511 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEA-IDMFCGI 158 (209)
Q Consensus 96 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m 158 (209)
. +.+...|..+-.+|...|++++|...|++.. ..+...+..+-..+.+.|+.+++ ...|+.|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4578899999999999999999999999873 34577888899999999999988 4566666
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.26 E-value=2.2e-05 Score=54.09 Aligned_cols=95 Identities=12% Similarity=-0.015 Sum_probs=82.7
Q ss_pred cHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHh
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSAC 174 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~ 174 (209)
+...+..+-..+.+.|++++|.+.|+... ..+...|..+-.+|...|++++|...|++. .+.|+ ...+..+-.++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 34577888889999999999999999983 346788999999999999999999999999 66775 46788889999
Q ss_pred ccccchhHHHHHHHHHHHhc
Q 045511 175 SSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~ 194 (209)
...|++++|...|+...+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988764
No 134
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.24 E-value=0.00037 Score=56.79 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=45.1
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh----CC
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL----AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT----VK 115 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g 115 (209)
.++.++|.+.|++..+.| +...+..+-..+.. .++.++|.++|+...+.| +...+..+-..|.. .+
T Consensus 164 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 344444444444444432 23333333333333 344444444444444333 23333344444433 44
Q ss_pred ChhhHHHHHHhcC-CCcHhHHHHHHHHHHh----CCChHHHHHHHhhC
Q 045511 116 DIFSAHQIFNSVV-FPDVVTWTTIISGLSK----CGFHKEAIDMFCGI 158 (209)
Q Consensus 116 ~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m 158 (209)
+.++|.++|++.. ..+...+..+-..|.. .+++++|...|++.
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 4444444444432 1223333333333333 44555555555444
No 135
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=1e-05 Score=54.79 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=70.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccC-cc----HhHHHHHHHHHHhCCChhhHHHHHHhcCC-----C----cHh
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----P----DVV 133 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~----~~~ 133 (209)
++..+-..+...|++++|...++...+.... ++ ..++..+-..|...|++++|.+.+++..+ . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555556666666665554433211 11 13556666666666666666666655411 1 133
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC-------CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI-------DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m-------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
.+..+-..+...|++++|...+.+. +..+ ...++..+-..+...|++++|.+.+....+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5556666666777777777666665 1111 123566666667777777777777776544
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=2.3e-05 Score=54.76 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=93.5
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHH-HhccccH--H
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKA-CSLAHAH--Q 83 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~--~ 83 (209)
..++.++|...+.+..+.. +.+...|..+-..+...|++++|...|++..+..- .+...+..+-.. +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 6788889998888887763 23558899999999999999999999999987542 355667777777 7788998 9
Q ss_pred HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 84 KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 84 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+|...++...+.. +.+...+..+-..|...|++++|...|++.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999998875 445778889999999999999999999887
No 137
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=1.5e-05 Score=53.82 Aligned_cols=97 Identities=9% Similarity=-0.159 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHH
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLS 143 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 143 (209)
..+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|+... ..+...|..+-.+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344455566677788888888888777654 3466677777778888888888888887762 234556677777788
Q ss_pred hCCChHHHHHHHhhC-CCCCCH
Q 045511 144 KCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 144 ~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
..|++++|...|+.. .+.|+.
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCC
Confidence 888888888888776 444443
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=7.9e-05 Score=49.38 Aligned_cols=93 Identities=8% Similarity=-0.104 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHH
Q 045511 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISG 141 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~ 141 (209)
+...|..+-..+...|+++.|...|+...+.. +.+...|..+-.+|...|++++|...++... ..+...|..+-..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44555555556666666666666666655543 2345566666666666666666666665552 2244556666666
Q ss_pred HHhCCChHHHHHHHhhC
Q 045511 142 LSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 142 ~~~~g~~~~a~~~~~~m 158 (209)
|...|++++|...|.+.
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 66666666666666655
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=1.5e-05 Score=60.47 Aligned_cols=181 Identities=3% Similarity=-0.106 Sum_probs=89.9
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|...+.++.+.. +.+...|..+-..+.+.|++++|...+++..+.. +-+...+..+-.++...|++++|.
T Consensus 16 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555555442 1134555666666666666666666666655532 123455555556666666666666
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHH
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
..|+...+.... +...+...+....+..........-......+... ...+..+ ..|++++|.+.+.+. ...|+..
T Consensus 93 ~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~~l-~~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 93 ANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL-HSYLTRL-IAAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH-HHHHHHH-HHHHHHHHHTTTSGGGTTTSCHH
T ss_pred HHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHH-HHHHHHHHHHHHHhhhccccchh
Confidence 666655543310 00111111111111111111111111111122222 2222222 368888999888887 7788765
Q ss_pred hHHHHHHH-hccc-cchhHHHHHHHHHHHh
Q 045511 166 TLVSVLSA-CSSL-GSRKLGKAIHAHSLRN 193 (209)
Q Consensus 166 t~~~li~~-~~~~-g~~~~a~~~~~~~~~~ 193 (209)
....-+.. +.+. +.++++.++|....+.
T Consensus 170 ~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 170 HIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 54444433 3333 6678899998877553
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.20 E-value=1.6e-05 Score=56.48 Aligned_cols=129 Identities=8% Similarity=-0.090 Sum_probs=100.5
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhh----CCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--c--Cc-
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLN----CPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYG--H--LH- 99 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~--~~- 99 (209)
...++..+-..+...|++++|...+++... .|..| ...++..+-..+...|++++|.+.++...+.. . .|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 347888899999999999999999988865 22222 34677888888999999999999998876541 1 11
Q ss_pred -cHhHHHHHHHHHHhCCChhhHHHHHHhcC-------CCc--HhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 100 -DIFIQNSLLHFYVTVKDIFSAHQIFNSVV-------FPD--VVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 100 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
...++..+-..+...|++++|.+.+++.. .+. ..++..+-..+...|++++|.+.+.+.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 24568888999999999999999998762 111 335678888999999999999988875
No 141
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.20 E-value=0.00029 Score=57.40 Aligned_cols=89 Identities=11% Similarity=-0.036 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHc----CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHhccCccHhH
Q 045511 32 HILNTLLKLLTQ----SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSL----AHAHQKGLEIHAHVIKYGHLHDIFI 103 (209)
Q Consensus 32 ~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~ 103 (209)
..+..|-..+.. .++.++|...|++..+.| +...+..+-..|.. .+++++|.++|+...+.| ++..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 149 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG 149 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 344444444444 444445555554444433 22233333333333 344444444444444433 2333
Q ss_pred HHHHHHHHHh----CCChhhHHHHHHh
Q 045511 104 QNSLLHFYVT----VKDIFSAHQIFNS 126 (209)
Q Consensus 104 ~~~ll~~~~~----~g~~~~a~~~~~~ 126 (209)
+..|-..|.. .++.++|.+.|++
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3333333433 3444444444443
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=6.9e-05 Score=51.67 Aligned_cols=99 Identities=8% Similarity=-0.013 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHH
Q 045511 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISG 141 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~ 141 (209)
+...|..+-..+.+.|++++|.+.|+...+.. +.+...|..+-.+|.+.|++++|...|++.. ..+...|..+-..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455556666666777777777777666654 3355667777777777777777777776652 2345666677777
Q ss_pred HHhCCChHHHHHHHhhC-CCCCCH
Q 045511 142 LSKCGFHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 142 ~~~~g~~~~a~~~~~~m-~~~p~~ 164 (209)
|...|++++|...|.+. .+.|+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHccCHHHHHHHHHHHHHhCCCc
Confidence 77777777777777766 334433
No 143
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.7e-05 Score=61.29 Aligned_cols=186 Identities=8% Similarity=-0.084 Sum_probs=134.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc---------------ccHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCHHH--
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP---------------HILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNHYT-- 68 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~---------------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t-- 68 (209)
+.++.++|.+.+.++.+......+. .++..+...|.+.|++++|.+.+......- -.++..+
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 6788888888888887765333332 237788999999999999999998886521 1122222
Q ss_pred --HHHHHHHHhccccHHHHHHHHHHHHHh----ccCcc-HhHHHHHHHHHHhCCChhhHHHHHHhcC--------CC-cH
Q 045511 69 --FTQALKACSLAHAHQKGLEIHAHVIKY----GHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVV--------FP-DV 132 (209)
Q Consensus 69 --~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~-~~ 132 (209)
.+.+-..+...|+.+.+.+++....+. +..+. ..++..|...|...|++++|..++.+.. .+ ..
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 222333345568899999888776643 22222 4578899999999999999999998761 12 25
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC-------CCCCC--HHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 133 VTWTTIISGLSKCGFHKEAIDMFCGI-------DVKPN--ANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 133 ~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
..|..+...|...|++++|...++.. +..|. ...+..+...+...|++++|...+....+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68899999999999999999999876 22222 24567777888899999999888876644
No 144
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.14 E-value=7.1e-05 Score=49.60 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..+...=..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|.+.++...+.. +.+...|..+-.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 566777788999999999999999988754 3467889999999999999999999999998875 45678999999999
Q ss_pred HhCCChhhHHHHHHhc
Q 045511 112 VTVKDIFSAHQIFNSV 127 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~ 127 (209)
...|++++|.+.|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 92 VAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999999987
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=1.7e-05 Score=52.68 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=28.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+.-+=..+.+.|++++|.+.|+...+.. +.+...|+.+-.+|.+.|++++|.+.++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444455555555555555554432 223444555555555555555555555443
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=9.2e-06 Score=55.58 Aligned_cols=94 Identities=11% Similarity=-0.064 Sum_probs=80.7
Q ss_pred cHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHh
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSAC 174 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~ 174 (209)
+...+..+-..+.+.|++++|...|+... ..+...|..+-.+|...|++++|...|++. .+.|+ ...+..+-.++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 45577788889999999999999999873 346788888999999999999999999998 66664 46788888899
Q ss_pred ccccchhHHHHHHHHHHHh
Q 045511 175 SSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~ 193 (209)
...|++++|...|....+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=0.00011 Score=49.02 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN----HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSL 107 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 107 (209)
..+..+-..+.+.|++++|...|++..+. .|+ ...|..+-..+...|++++|.+.++...+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 45555566666666666666666666553 244 4555555555666666666666666555542 2234555555
Q ss_pred HHHHHhCCChhhHHHHHHhc
Q 045511 108 LHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~ 127 (209)
-.+|...|++++|.+.|++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55666666666666665554
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.12 E-value=9e-05 Score=47.25 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
...+..+...+.+.|++++|...|++..... +.+...+..+-..+...|++++|...++...+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567778888999999999999999998753 2367788888889999999999999999998875 4467889999999
Q ss_pred HHhCCChhhHHHHHHhcC
Q 045511 111 YVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~ 128 (209)
+...|++++|.+.++...
T Consensus 82 ~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 999999999999998873
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=7e-06 Score=58.65 Aligned_cols=153 Identities=11% Similarity=0.023 Sum_probs=86.8
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccC-c--------------cHhHH
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-H--------------DIFIQ 104 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~--------------~~~~~ 104 (209)
.....|+++.+.+.|+.-... .......+..+-..+.+.|++++|...|+...+.... | ...+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 333445555555555322211 1112344555566666777777777777777654211 1 02677
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGS 179 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~ 179 (209)
..+-.+|.+.|++++|...++... ..+...|..+-.+|...|++++|...|++. .+.|+. ..+..+-..+...++
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 788888888888888888888762 345677888888888888888888888887 555644 456666666666666
Q ss_pred hhHHH-HHHHHHHHh
Q 045511 180 RKLGK-AIHAHSLRN 193 (209)
Q Consensus 180 ~~~a~-~~~~~~~~~ 193 (209)
.+++. ..+..+...
T Consensus 172 ~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 172 ARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHC------------
T ss_pred HHHHHHHHHHHHhcc
Confidence 66665 444444333
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.10 E-value=2.5e-05 Score=59.37 Aligned_cols=152 Identities=11% Similarity=0.016 Sum_probs=107.0
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCc----ccHHHHHHHHHcCCCccchHHHHHHhhhCCC---CCC--HHHHHHHHHHHh
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQP----HILNTLLKLLTQSSTPQNAIPLYNKMLNCPS---SYN--HYTFTQALKACS 77 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~---~p~--~~t~~~ll~~~~ 77 (209)
..++.+++.+.+.+..+.....++. ..+..+...+...|++++|...+++..+... .+. ..+|+.+-..|.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4455555555555544432111111 2234455666788999999999998875321 122 458889999999
Q ss_pred ccccHHHHHHHHHHHHHhc-cCcc-----HhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-------cHhHHHHHHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYG-HLHD-----IFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-------DVVTWTTIISGL 142 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g-~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-------~~~~~~~li~~~ 142 (209)
..|++++|.+.|+...+.. ..|+ ..+++.+-..|.+.|++++|.+.+++..+ + -..+|..+-..|
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 9999999999999887331 1122 26899999999999999999999987621 1 156788888999
Q ss_pred HhCCChHHH-HHHHhhC
Q 045511 143 SKCGFHKEA-IDMFCGI 158 (209)
Q Consensus 143 ~~~g~~~~a-~~~~~~m 158 (209)
.+.|++++| ...|++.
T Consensus 247 ~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHTTCCHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHH
Confidence 999999999 6667663
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=3.1e-05 Score=50.55 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc--Ccc----HhHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH--LHD----IFIQN 105 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~ 105 (209)
..|..+-..+.+.|++++|...|++..+.. +.+...+..+-..+...|+++.|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 467778888999999999999999988754 34677888889999999999999999999887652 122 67888
Q ss_pred HHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHH
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTII 139 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li 139 (209)
.+-..|.+.|++++|.+.|+... .|+...+..+-
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999998872 34554444443
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=0.00011 Score=49.10 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc----HhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHH
Q 045511 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWT 136 (209)
Q Consensus 64 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~ 136 (209)
.+...+..+-..+...|+++.|.+.|+...+.. |+ ...|..+-..|...|++++|.+.++... ..+...|.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 356777778888888899999999988887653 44 5778888888888888888888887762 23566777
Q ss_pred HHHHHHHhCCChHHHHHHHhhC-CCCCCHH
Q 045511 137 TIISGLSKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
.+-..+...|++++|...|.+. ...|+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 7888888888888888888887 5555543
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=1.5e-05 Score=53.90 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=96.9
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCC-CC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhccC-c----cH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSS-YN----HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-H----DI 101 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~----~~ 101 (209)
.++..+-..+...|++++|...+++..+..-. ++ ..++..+-..+...|++++|.+.++...+.... + ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 56777888888999999999999887653211 11 147788888889999999999999887654311 1 14
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhcCC-----C----cHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSVVF-----P----DVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.++..+-..+...|++++|.+.+++..+ . ....+..+-..+...|++++|.+.+.+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5788888899999999999999877621 1 2456778888999999999999988764
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.07 E-value=0.00012 Score=55.66 Aligned_cols=190 Identities=9% Similarity=-0.062 Sum_probs=131.0
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHH-------HHHHHcCCCccchHHHHHHhhhCCCCCCH--------------
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTL-------LKLLTQSSTPQNAIPLYNKMLNCPSSYNH-------------- 66 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------------- 66 (209)
.+.+..|.+.|.++.+..+. ....|..+ ...+.+.++..++...+++-.. +.|+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 45555666666666665322 33778877 4666666666777666655544 22211
Q ss_pred --------HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-Cc----Hh
Q 045511 67 --------YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PD----VV 133 (209)
Q Consensus 67 --------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~----~~ 133 (209)
...-.....+...|++++|.+.|+.+...+ |+....-.+-..+.+.+++++|+..|+.... ++ ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122334566778899999999999888755 4443555556689999999999999987743 22 23
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC--CCC-CCH--HhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhHhHh
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI--DVK-PNA--NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m--~~~-p~~--~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 205 (209)
.+..+=.++.+.|++++|+..|++. |-. |.. ......-.++.+.|+.++|..+|+.+.... |+...+.+|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 5666778899999999999999998 433 652 244445566778999999999999998874 445555544
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=2.4e-05 Score=50.93 Aligned_cols=83 Identities=8% Similarity=0.001 Sum_probs=52.2
Q ss_pred CCCccchHHHHHHhhhCC--CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHH
Q 045511 44 SSTPQNAIPLYNKMLNCP--SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
.|++++|...|++..+.+ -+-+...+..+-..+.+.|++++|.+.|+...+.. +-+..++..+-.+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777653 12234556666666777777777777777776654 334566666777777777777777
Q ss_pred HHHHhc
Q 045511 122 QIFNSV 127 (209)
Q Consensus 122 ~~~~~~ 127 (209)
+.+++.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777655
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=7.1e-05 Score=49.63 Aligned_cols=90 Identities=12% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH--------HhHHHH
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA--------NTLVSV 170 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~--------~t~~~l 170 (209)
.+..+-..+.+.|++++|.+.|++.. ..+...|+.+-.+|...|++++|++.|.+. .+.|+. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34444455555555555555555441 123444555555555555555555555544 222211 233344
Q ss_pred HHHhccccchhHHHHHHHHHHH
Q 045511 171 LSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~~~~ 192 (209)
-.++...|++++|.+.|....+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555555554443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=6.1e-05 Score=49.42 Aligned_cols=95 Identities=14% Similarity=0.025 Sum_probs=81.1
Q ss_pred cHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHHh
Q 045511 100 DIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSAC 174 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~~ 174 (209)
+...|..+-..+.+.|++++|.+.|++.. ..+...|..+-.+|.+.|++++|+..|.+. .+.|+ ...+..+-.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34567778888999999999999999873 346788999999999999999999999998 66665 56788888999
Q ss_pred ccccchhHHHHHHHHHHHhc
Q 045511 175 SSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~ 194 (209)
...|++++|.+.+....+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999876653
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.02 E-value=0.00011 Score=48.65 Aligned_cols=96 Identities=7% Similarity=-0.121 Sum_probs=82.7
Q ss_pred CccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHH
Q 045511 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLS 172 (209)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~ 172 (209)
+.+...+..+-..+...|++++|...|.... ..+...|..+-..+...|++++|...|.+. ...|+ ...+..+-.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3467788999999999999999999999872 345788999999999999999999999998 55554 567888889
Q ss_pred HhccccchhHHHHHHHHHHHh
Q 045511 173 ACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.+...|++++|...+....+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999987665
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.01 E-value=6e-05 Score=51.99 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=83.1
Q ss_pred ccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC-HHhHHHHHHH
Q 045511 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSA 173 (209)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~-~~t~~~li~~ 173 (209)
.+...+..+-..+.+.|++++|.+.|++.. ..+...|..+-.+|.+.|++++|+..|++. .+.|+ ...+..+-.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346678888899999999999999999873 346788999999999999999999999998 66665 5678888999
Q ss_pred hccccchhHHHHHHHHHHHhc
Q 045511 174 CSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~ 194 (209)
+...|++++|.+.|....+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999887763
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=0.00011 Score=52.31 Aligned_cols=126 Identities=10% Similarity=-0.023 Sum_probs=96.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCC-CC---C-----------HHHHHHHHHHHhccccHHHHHHHHHHHHHhc
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-SY---N-----------HYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p---~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 96 (209)
..+..+-..+.+.|++++|...|++..+..- .| . ...|..+-.++.+.|++++|...++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5677778888899999999999999987431 11 1 2678888889999999999999999998874
Q ss_pred cCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHH-HHHhhC
Q 045511 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAI-DMFCGI 158 (209)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m 158 (209)
+.+...+..+-.+|...|++++|.+.|++.. ..+...+..+-..+...++.+++. ..|..|
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998872 335667777878777777777665 555555
No 161
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=6.3e-05 Score=61.71 Aligned_cols=118 Identities=6% Similarity=-0.052 Sum_probs=92.6
Q ss_pred HhccccHHHHHHHHHHHHHhc---cC---cc-HhHHHHHHHHHHhCCChhhHHHHHHhcC----------CCc-HhHHHH
Q 045511 76 CSLAHAHQKGLEIHAHVIKYG---HL---HD-IFIQNSLLHFYVTVKDIFSAHQIFNSVV----------FPD-VVTWTT 137 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g---~~---~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~-~~~~~~ 137 (209)
+..+|++++|+.+++..++.. +. |+ ..+++.|...|...|++++|+.++.+.. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 457899999999998877553 22 22 4589999999999999999999988761 233 568999
Q ss_pred HHHHHHhCCChHHHHHHHhhC---------CCCCCH-HhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 138 IISGLSKCGFHKEAIDMFCGI---------DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m---------~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|-..|...|++++|+.++.+. .-.|++ .+.+.+-.++...+.+++|+.++..+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877 223444 34566666777899999999999988765
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00016 Score=57.47 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=113.5
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCC----------------HHHHHHHHHHHhccccHHHHHHHHHHHHHhccC-ccH
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYN----------------HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL-HDI 101 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~ 101 (209)
..+.+.|++++|.+.|....+..-..+ ...+..+...|...|+++++.+.+....+.--. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 346778999999999999876432211 124778899999999999999999887654211 221
Q ss_pred ----hHHHHHHHHHHhCCChhhHHHHHHhcC--------CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC-------CCC
Q 045511 102 ----FIQNSLLHFYVTVKDIFSAHQIFNSVV--------FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI-------DVK 161 (209)
Q Consensus 102 ----~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~ 161 (209)
.+.+.+-..+...|+.+.|.+++.... .+ -..++..+...|...|++++|..++++. +-+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 233344444556789999999887652 12 2457888999999999999999999887 222
Q ss_pred CC-HHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 162 PN-ANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 162 p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
|. ..++....+.|...|++++|..+++.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 22 357888999999999999999999876543
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=1.6e-05 Score=51.85 Aligned_cols=81 Identities=11% Similarity=0.011 Sum_probs=62.5
Q ss_pred ccccHHHHHHHHHHHHHhc--cCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYG--HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAI 152 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 152 (209)
..|++++|...|+...+.+ -+.+...+..+-..|.+.|++++|.+.|++.. ..+...+..+-.++.+.|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4578888999998888764 23356788888899999999999999998873 235678888889999999999999
Q ss_pred HHHhhC
Q 045511 153 DMFCGI 158 (209)
Q Consensus 153 ~~~~~m 158 (209)
..|.+.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=8e-05 Score=60.89 Aligned_cols=115 Identities=10% Similarity=-0.090 Sum_probs=60.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.++.++|.+.+.++.+.. +.+..+|..+-..+.+.|++++|...+++..+.. +-+...|..+-.++.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555555442 1134566666666666666666666666666542 123455666666666666666666
Q ss_pred HHHHHHHHhccCccHhHHHHHHHH--HHhCCChhhHHHHHH
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFN 125 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 125 (209)
+.|+...+.. +.+...+..+-.+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665543 1223334333333 555666666666665
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=8.4e-05 Score=50.06 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..+..+-..+.+.|++++|...|++....+ +.+...|..+-.++.+.|++++|...|+...+.. +.+...+..+-.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 556667778889999999999999998754 2466778888889999999999999999998875 45677888999999
Q ss_pred HhCCChhhHHHHHHhc
Q 045511 112 VTVKDIFSAHQIFNSV 127 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~ 127 (209)
...|++++|.+.|+..
T Consensus 97 ~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999999886
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.96 E-value=8.9e-05 Score=48.71 Aligned_cols=83 Identities=10% Similarity=-0.118 Sum_probs=36.1
Q ss_pred HHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHH
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a 151 (209)
.+.+.|++++|...|+...+.. +.+...|..+-.++...|++++|...|++.. .| +...+..+-..|...|++++|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444444432 2233444444444444444444444444431 11 233444444444444444444
Q ss_pred HHHHhhC
Q 045511 152 IDMFCGI 158 (209)
Q Consensus 152 ~~~~~~m 158 (209)
...|++.
T Consensus 105 ~~~~~~a 111 (121)
T 1hxi_A 105 LASLRAW 111 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 167
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.95 E-value=0.002 Score=52.13 Aligned_cols=159 Identities=8% Similarity=-0.085 Sum_probs=98.4
Q ss_pred CCcccHHHHHHHHHcCC---CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHhccCccH
Q 045511 29 PQPHILNTLLKLLTQSS---TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA----HAHQKGLEIHAHVIKYGHLHDI 101 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~~~~ 101 (209)
.++..+..|-..+.+.| +.++|...|++..+.|. ++...+..+-..|... ++.++|.++|+... .| ++
T Consensus 174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~ 248 (452)
T 3e4b_A 174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YP 248 (452)
T ss_dssp TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---ST
T ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CH
Confidence 34457777777777788 88888888888887774 3444434444444443 57778888877766 33 44
Q ss_pred hHHHHHHHH-H--HhCCChhhHHHHHHhcCC-CcHhHHHHHHHHHHhCC-----ChHHHHHHHhhCCCCCCHHhHHHHHH
Q 045511 102 FIQNSLLHF-Y--VTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCG-----FHKEAIDMFCGIDVKPNANTLVSVLS 172 (209)
Q Consensus 102 ~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~p~~~t~~~li~ 172 (209)
..+..|-.. | ...++.++|.++|.+..+ .+...+..+-..|. .| ++++|...|.+.- .-+...+..+-.
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 455555544 3 457788888888877632 34555555555555 34 7777887777753 333444444444
Q ss_pred Hhcc----ccchhHHHHHHHHHHHhc
Q 045511 173 ACSS----LGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 173 ~~~~----~g~~~~a~~~~~~~~~~~ 194 (209)
.|.. ..+.++|...|....+.|
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 4443 236777777777666655
No 168
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.89 E-value=0.00013 Score=62.25 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=126.8
Q ss_pred hccCCCcchHhHHHHHHHHh--------hCCC------------cccHHHHHHHHHcCCCccchHHHHHHhhhC-C-CCC
Q 045511 7 KSLKPTLSFKQLNQIHAQII--------KIPQ------------PHILNTLLKLLTQSSTPQNAIPLYNKMLNC-P-SSY 64 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~--------~~p~------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g-~~p 64 (209)
+.++.+.+.+.+..+..... ..|+ ...|...+....+.|..+.|.++|.+..+. + ..+
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~ 469 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP 469 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh
Confidence 55666777777777766531 1242 247888898888999999999999999876 3 223
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--C----cHhHHHHH
Q 045511 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P----DVVTWTTI 138 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l 138 (209)
......+.+...+ .++.+.|..+|+...+. .+.+...|...++.....|+.+.|+.+|+.... | ....|...
T Consensus 470 ~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 470 DIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333333333322 35689999999999887 456777888999999999999999999998743 3 34689999
Q ss_pred HHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhc
Q 045511 139 ISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACS 175 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~ 175 (209)
+.--.+.|+.+.+..+.+++ ...|+......+++-|.
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 99999999999999999999 66777777777777774
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=7.3e-05 Score=58.28 Aligned_cols=143 Identities=12% Similarity=-0.007 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..+..+-..+.+.|++++|...|++.... .|+... +...++.+++...+ ...+|..+-.+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677778888999999999999987763 344331 22333333332221 123677777888
Q ss_pred HhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHh--ccccchhHHHH
Q 045511 112 VTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSAC--SSLGSRKLGKA 185 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~--~~~g~~~~a~~ 185 (209)
.+.|++++|...++... ..+...|..+-.+|...|++++|...|++. .+.|+.......+..+ ...+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887762 235677778888888888888888888887 6666554332223322 23455667777
Q ss_pred HHHHHHHh
Q 045511 186 IHAHSLRN 193 (209)
Q Consensus 186 ~~~~~~~~ 193 (209)
++..+.+.
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77766544
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.87 E-value=7.5e-05 Score=61.06 Aligned_cols=119 Identities=14% Similarity=0.001 Sum_probs=72.1
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
-..+.+.|++++|.+.|++..+.. +-+...|..+-.++.+.|++++|.+.++...+.. +.+..+|..+-..|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 334556677777777777776642 1245667777777777777777777777776653 33456777777777777777
Q ss_pred hhHHHHHHhcC--CC-cHhHHHHHHHH--HHhCCChHHHHHHHhhC
Q 045511 118 FSAHQIFNSVV--FP-DVVTWTTIISG--LSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 118 ~~a~~~~~~~~--~~-~~~~~~~li~~--~~~~g~~~~a~~~~~~m 158 (209)
++|.+.|++.. .| +...+..+-.+ +.+.|++++|.+.+.+-
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 77777777652 12 23344444333 66667777777776643
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.86 E-value=0.00043 Score=45.18 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=39.0
Q ss_pred HhccccHHHHHHHHHHHHHhccCccH---hHHHHHHHHHHhCCChhhHHHHHHhcC--CCc----HhHHHHHHHHHHhCC
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHLHDI---FIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD----VVTWTTIISGLSKCG 146 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~----~~~~~~li~~~~~~g 146 (209)
+...|++++|...|+...+... .+. ..+..+-.++.+.|++++|...|+... .|+ ...+..+-.++...|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 3444555555555555544321 111 244444455555555555555555441 121 333444455555555
Q ss_pred ChHHHHHHHhhC
Q 045511 147 FHKEAIDMFCGI 158 (209)
Q Consensus 147 ~~~~a~~~~~~m 158 (209)
++++|...|++.
T Consensus 91 ~~~~A~~~~~~~ 102 (129)
T 2xev_A 91 KNTEAQQTLQQV 102 (129)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555554
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00029 Score=48.33 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=63.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhc-----------------cCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---C
Q 045511 70 TQALKACSLAHAHQKGLEIHAHVIKYG-----------------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---F 129 (209)
Q Consensus 70 ~~ll~~~~~~~~~~~a~~~~~~m~~~g-----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~ 129 (209)
...-..+.+.|+++.|...|....+.- -+.+..+|..+-.+|.+.|++++|...++... .
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 333344455555555555555544430 12234577788888888888888888887762 3
Q ss_pred CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHH
Q 045511 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
.+...|..+-.+|...|++++|...|... .+.|+..
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 45677788888888888888888888877 6666654
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=0.00033 Score=56.91 Aligned_cols=119 Identities=6% Similarity=-0.019 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--------------HhHHHHHHHHHHhCCChhhHHHHHHhcC---
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--------------IFIQNSLLHFYVTVKDIFSAHQIFNSVV--- 128 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~--- 128 (209)
...|...-..+.+.|+++.|...|+...+...... ..+|..+-.+|.+.|++++|...+++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777778888888888887776542211 5778888888888888888888888762
Q ss_pred CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHH
Q 045511 129 FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 129 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~ 184 (209)
..+...|..+-.+|...|++++|...|++. .+.|+. ..+..+-..+.+.|+.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888887 666654 45666666677777776655
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.00022 Score=57.90 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC----------------HHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN----------------HYTFTQALKACSLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 94 (209)
...|..+-..+.+.|++++|...|++..+.. |+ ...|..+-.++.+.|++++|...++..++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3578888889999999999999999988743 33 57888999999999999999999999998
Q ss_pred hccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHHHHHHhCCChHHHH-HHHhhC
Q 045511 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTIISGLSKCGFHKEAI-DMFCGI 158 (209)
Q Consensus 95 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~-~~~~~m 158 (209)
.. +.+...|..+-.+|...|++++|...|++..+ | +...+..+-..+.+.++.+++. ..++.|
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 45688999999999999999999999998732 3 5668888888898889888765 566666
No 175
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.80 E-value=0.0014 Score=52.99 Aligned_cols=159 Identities=8% Similarity=0.046 Sum_probs=95.8
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc---cHHHHHHHHHHHHHhccCccHhHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH---AHQKGLEIHAHVIKYGHLHDIFIQNS 106 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ 106 (209)
+...+..+-..+...+.++.+........+.-...+...+..+-..+.+.| +.++|.++|+...+.| .++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 344555555555555555554444333322212223336666666777777 8888888888888877 445555556
Q ss_pred HHHHHHhC----CChhhHHHHHHhcCCCcHhHHHHHHHH-H--HhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhcccc
Q 045511 107 LLHFYVTV----KDIFSAHQIFNSVVFPDVVTWTTIISG-L--SKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLG 178 (209)
Q Consensus 107 ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g 178 (209)
|-..|... +++++|.++|+....-+...+..+-.. | ...+++++|+..|.+. ... +...+..+-..|. .|
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HC
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cC
Confidence 66666544 688888888888762244555555554 3 4578888888888876 111 4444554544554 34
Q ss_pred -----chhHHHHHHHHHH
Q 045511 179 -----SRKLGKAIHAHSL 191 (209)
Q Consensus 179 -----~~~~a~~~~~~~~ 191 (209)
++++|...|....
T Consensus 297 ~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 7778877776554
No 176
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.79 E-value=0.00023 Score=54.01 Aligned_cols=125 Identities=6% Similarity=-0.113 Sum_probs=95.9
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--HhHHHHHHHHHHh
Q 045511 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--IFIQNSLLHFYVT 113 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~ 113 (209)
.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.++++.|+..|+...+.. .|. ...+..+=.++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 46677888999999999999998755 554444444557889999999999997443321 111 2367778889999
Q ss_pred CCChhhHHHHHHhcC-C---C--cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC
Q 045511 114 VKDIFSAHQIFNSVV-F---P--DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN 163 (209)
Q Consensus 114 ~g~~~~a~~~~~~~~-~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~ 163 (209)
.|++++|++.|++.. . | ........-.++.+.|+.++|...|+++ ...|+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999883 2 3 2335666778888999999999999999 77787
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.76 E-value=0.00033 Score=45.70 Aligned_cols=91 Identities=10% Similarity=-0.126 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc---HhHHHH
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH----YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD---IFIQNS 106 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ 106 (209)
+-.+-..+.+.|++++|...|++..+.. |+. ..+..+-..+.+.|++++|...|+...+... .+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHH
Confidence 3345566778999999999999988753 332 4677778888999999999999999987652 22 567888
Q ss_pred HHHHHHhCCChhhHHHHHHhc
Q 045511 107 LLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+-.+|.+.|++++|.+.|+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888999999999999999887
No 178
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.76 E-value=0.0035 Score=48.19 Aligned_cols=179 Identities=11% Similarity=0.065 Sum_probs=118.5
Q ss_pred CCCcchHhHHHHHHHHhhCCCcccHHHHHHHH----HcC---CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 10 KPTLSFKQLNQIHAQIIKIPQPHILNTLLKLL----TQS---STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 10 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
..+++++.+..+....+ .+..+|+.--..+ .+. +++++++.+++++.+.. +-|...|+.---.+.+.|.+
T Consensus 84 ~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccc
Confidence 34444555555544321 2345555544444 344 67777777777777654 23556666665666666666
Q ss_pred H--HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC------hhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHH-
Q 045511 83 Q--KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD------IFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKE- 150 (209)
Q Consensus 83 ~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~- 150 (209)
+ ++.+.++.+.+.. +-|-..|+.--..+.+.|. ++++.+.+++.. ..|...|+-.-..+.+.|+...
T Consensus 161 ~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 161 NDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp TCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 6 7778888887765 4566677766666666665 777777777662 3467788877777777777444
Q ss_pred HHHHHhhC-CC----CCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 151 AIDMFCGI-DV----KPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 151 a~~~~~~m-~~----~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
+.++..+. .. ..+...+..+...+.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55677766 32 34667888889999999999999999999865
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.76 E-value=0.00034 Score=55.23 Aligned_cols=117 Identities=8% Similarity=0.017 Sum_probs=87.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHh---------------ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC---
Q 045511 68 TFTQALKACSLAHAHQKGLEIHAHVIKY---------------GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--- 129 (209)
Q Consensus 68 t~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 129 (209)
.+..+-..+.+.|++++|.+.|+..++. --+.+..+|..+-.+|.+.|++++|.+.+++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4666667777888888888888877651 1123457888999999999999999999988732
Q ss_pred CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHH
Q 045511 130 PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~ 184 (209)
.+...|..+-.+|...|++++|...|++. .+.|+. ..+..+-..+...++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888889999999999999999988 666654 45555555556666665554
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.75 E-value=0.00072 Score=51.11 Aligned_cols=96 Identities=8% Similarity=-0.013 Sum_probs=76.9
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+...+..+-..+.+.|++++|...|++..+.. +-+...|..+-..+.+.|++++|.+.++...+.. +.+...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777788888999999999998887753 2266778888888888999999999988887654 345678888888
Q ss_pred HHHhCCChhhHHHHHHhc
Q 045511 110 FYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~ 127 (209)
+|...|++++|.+.|...
T Consensus 81 ~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 899999999999988876
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.69 E-value=0.00032 Score=45.96 Aligned_cols=95 Identities=6% Similarity=-0.086 Sum_probs=80.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
..+-.+-..+.+.|++++|...|++..+.. +-+...|..+-.++...|++++|...|+...+.. +.+...+..+-..|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345556677889999999999999998854 2367788888889999999999999999998875 34677889999999
Q ss_pred HhCCChhhHHHHHHhcC
Q 045511 112 VTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~ 128 (209)
...|++++|...+++..
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999999998864
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.64 E-value=0.00055 Score=53.27 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.|+.+-.+|.+.|++++|+..|.+. .+.| +...+..+-.++...|++++|...|....+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999998 5566 5578888999999999999999999876543
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00015 Score=45.95 Aligned_cols=60 Identities=5% Similarity=-0.099 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
..+..+-..+.+.|++++|.+.|+...+.. +.+...+..+-.+|.+.|++++|.+.+++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344444445555555555555555554442 223445555555555555555555555544
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00024 Score=58.33 Aligned_cols=119 Identities=8% Similarity=-0.085 Sum_probs=92.5
Q ss_pred HHHcCCCccchHHHHHHhhhC---CCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhc---cC---cc-HhHHH
Q 045511 40 LLTQSSTPQNAIPLYNKMLNC---PSSYN----HYTFTQALKACSLAHAHQKGLEIHAHVIKYG---HL---HD-IFIQN 105 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~---g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~---~~-~~~~~ 105 (209)
.+-..|++++|..++++..+. -+.|+ ..+++.+...|...|++++|+.+++..++.- +. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887642 13332 3679999999999999999999998776441 22 33 45899
Q ss_pred HHHHHHHhCCChhhHHHHHHhcC----------CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVV----------FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~----------~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.|-..|...|++++|+.++.+.. .|+ ..+.+.+-.++...+.+++|+.+|.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998761 133 345667778888889999999999887
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00046 Score=43.65 Aligned_cols=86 Identities=15% Similarity=0.046 Sum_probs=65.2
Q ss_pred ccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCH-------HhH
Q 045511 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNA-------NTL 167 (209)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~-------~t~ 167 (209)
++...+..+-..+.+.|++++|.+.|++.. ..+...|..+-.++.+.|++++|...|.+. ...|+. ..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 356678888899999999999999998872 346788889999999999999999999998 777774 334
Q ss_pred HHHHHHhccccchhHHH
Q 045511 168 VSVLSACSSLGSRKLGK 184 (209)
Q Consensus 168 ~~li~~~~~~g~~~~a~ 184 (209)
..+-.++...|+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHhHhhhH
Confidence 44444444445444443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.47 E-value=0.00068 Score=53.54 Aligned_cols=121 Identities=12% Similarity=0.000 Sum_probs=96.8
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhC---------------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNC---------------PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 96 (209)
..|..+-..+.+.|++++|...|++..+. --+-+...|..+-.++.+.|++++|.+.++..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888899999999999999988761 112245778888889999999999999999998864
Q ss_pred cCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHH
Q 045511 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~ 153 (209)
+.+...|..+-.+|...|++++|.+.|++.. .| +...+..+-..+...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999873 23 56677777777777777776643
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.32 E-value=0.0024 Score=43.64 Aligned_cols=95 Identities=12% Similarity=-0.016 Sum_probs=77.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhC--------C---------CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNC--------P---------SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 94 (209)
..+...-..+.+.|++++|...|++.... . -+-+...|..+-.++.+.|+++.|...++..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666677788899999999999887764 1 012336788888889999999999999999988
Q ss_pred hccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 95 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 95 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
.. +.+...|..+-.+|...|++++|...|...
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 75 456788999999999999999999999887
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.29 E-value=0.002 Score=41.20 Aligned_cols=76 Identities=13% Similarity=-0.045 Sum_probs=35.9
Q ss_pred chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 49 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.+...|++..+.. +.+...+..+-..+...|++++|...|+...+.. +.+...|..+-..|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444555444432 1233444455555555555555555555554433 22334444444455555555555554444
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.23 E-value=0.0053 Score=39.18 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+.+.|+...+.. +.+...+..+-..|...|++++|.+.|++.. ..+...|..+-..|...|++++|...|.+.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444432 2345566666666666666666666666552 223455566666666666666666666655
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.20 E-value=0.0035 Score=43.30 Aligned_cols=26 Identities=4% Similarity=-0.106 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhh
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLN 59 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~ 59 (209)
+...-..+.+.|++++|...|++..+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~ 39 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME 39 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444555666777777777776665
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.19 E-value=0.023 Score=39.18 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=62.7
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCc------c-----HhHHHHHHHHHHhCCChhhHHHHHHhcC---------
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLH------D-----IFIQNSLLHFYVTVKDIFSAHQIFNSVV--------- 128 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~------~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------- 128 (209)
+...-..+.+.|++++|.+.|+..++..... + ...|+.+-.++.+.|++++|...+++..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455677899999999999888765321 2 2378888888888888888888777652
Q ss_pred CCc-HhHH----HHHHHHHHhCCChHHHHHHHhhC
Q 045511 129 FPD-VVTW----TTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 129 ~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.|+ ...| ...-.++...|++++|+..|++.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 343 4456 66667777777777777777766
No 192
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.19 E-value=0.038 Score=43.17 Aligned_cols=178 Identities=10% Similarity=0.011 Sum_probs=112.2
Q ss_pred CcchHhHHHHHHHHhhCCCcccHHHHHHHHHcC-C-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHH------
Q 045511 12 TLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQS-S-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ------ 83 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~------ 83 (209)
+++++.+..+.... +.+..+|+.--..+.+. + ++++++++++++.+... -|...|+----...+.+..+
T Consensus 106 ~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 106 EDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhh
Confidence 34444444444322 22446666666666555 5 67777788877776542 35566665555555555555
Q ss_pred --HHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC-------hhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCCh---
Q 045511 84 --KGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD-------IFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFH--- 148 (209)
Q Consensus 84 --~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~--- 148 (209)
++.+.++.+.+.. +-|-..|+..-..+.+.++ ++++.+.+++.. ..|...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 7777888887765 4577788888777777776 577777776652 34667777666666665543
Q ss_pred -----------------HHHHHHHhhC-CC-------CCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 149 -----------------KEAIDMFCGI-DV-------KPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 149 -----------------~~a~~~~~~m-~~-------~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
....++..++ +. .++.....-+...|...|+.++|.++++.+.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 3444555555 22 367778888899999999999999999988544
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.17 E-value=0.007 Score=40.45 Aligned_cols=73 Identities=18% Similarity=0.072 Sum_probs=31.4
Q ss_pred ccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHh----CCChhhHHH
Q 045511 47 PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVT----VKDIFSAHQ 122 (209)
Q Consensus 47 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~ 122 (209)
.++|..+|++..+.|. |+.. +=..|...+.++.|.++|+...+.| ++..+..|-..|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3444555555544441 2222 2233333334444555554444443 33444444444444 444555555
Q ss_pred HHHhc
Q 045511 123 IFNSV 127 (209)
Q Consensus 123 ~~~~~ 127 (209)
+|++.
T Consensus 83 ~~~~A 87 (138)
T 1klx_A 83 YYSKA 87 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.15 E-value=0.0072 Score=36.36 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=24.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
+..+-..+...|++++|...++...+.. +.+..++..+-..|.+.|++++|.+.|++
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333344444444444444444444332 22333444444444444444444444444
No 195
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.13 E-value=0.047 Score=41.85 Aligned_cols=154 Identities=10% Similarity=0.055 Sum_probs=118.5
Q ss_pred cCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCcc--chHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-----
Q 045511 9 LKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQ--NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA----- 81 (209)
Q Consensus 9 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~----- 81 (209)
+..+++++.+..+.+.. +.|..+|+.---.+.+.|.++ ++++.++++.+.+. -|...|+---....+.++
T Consensus 124 ~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 45566676666666543 346689988888888889888 99999999998764 466777766666666666
Q ss_pred -HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhh-HHHHHHhcC------CCcHhHHHHHHHHHHhCCChHHHHH
Q 045511 82 -HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVV------FPDVVTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 82 -~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~ 153 (209)
++++.+.++...+.. +-|...|+-+-..+.+.|+..+ +..+..++. ..+...+..+...|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 888888888888775 5678899999888988888544 556666653 2467889999999999999999999
Q ss_pred HHhhC--CCCCCHHh
Q 045511 154 MFCGI--DVKPNANT 166 (209)
Q Consensus 154 ~~~~m--~~~p~~~t 166 (209)
+++.+ ...|--.-
T Consensus 280 ~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 280 VYDLLKSKYNPIRSN 294 (306)
T ss_dssp HHHHHHHTTCGGGHH
T ss_pred HHHHHHhccChHHHH
Confidence 99998 36665543
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.10 E-value=0.0024 Score=40.04 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
...+..+-..|.+.|++++|.+.|++.. ..+...|..+-.+|...|++++|.+.|++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555555555555555555555541 12334455555555555555555555554
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.0015 Score=52.68 Aligned_cols=88 Identities=8% Similarity=-0.095 Sum_probs=67.5
Q ss_pred hCCChhhHHHHHHhcC----------CCc-HhHHHHHHHHHHhCCChHHHHHHHhhC---------CCCCCH-HhHHHHH
Q 045511 113 TVKDIFSAHQIFNSVV----------FPD-VVTWTTIISGLSKCGFHKEAIDMFCGI---------DVKPNA-NTLVSVL 171 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~----------~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m---------~~~p~~-~t~~~li 171 (209)
..|++++|+.++++.- .|+ ..+++.+...|...|++++|+.++.+. .-.|+. .+++.+-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578899998887651 132 468999999999999999999998887 344665 5799999
Q ss_pred HHhccccchhHHHHHHHHHH---HhccCCCch
Q 045511 172 SACSSLGSRKLGKAIHAHSL---RNLNENNII 200 (209)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~---~~~~~p~~~ 200 (209)
..|...|++++|+.++.+.. +.-+.|+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 99999999999999998653 334455443
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.97 E-value=0.0064 Score=38.02 Aligned_cols=61 Identities=8% Similarity=0.029 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 66 HYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
...+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555566666666665555543 223445555556666666666666655543
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.95 E-value=0.072 Score=43.60 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=90.5
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHH----------------------------------------HHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY----------------------------------------TFT 70 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----------------------------------------t~~ 70 (209)
...|-..+..+.+.|+++.|..+|++.... +.+.. .|.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 467777777777888888888888877765 22221 122
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhccCccHhHHH--HHHHHHHhCCChhhHHHHHHhcCC--C-cHhHHHHHHHHHHhC
Q 045511 71 QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQN--SLLHFYVTVKDIFSAHQIFNSVVF--P-DVVTWTTIISGLSKC 145 (209)
Q Consensus 71 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 145 (209)
..+....+.+.++.|..+|+.. +.. ..+..+|- +.+.... .++++.|.++|+...+ | +...|...+.-....
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 2222223345566677777666 221 12233332 2222222 2257777777766521 2 233455566666677
Q ss_pred CChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 146 GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 146 g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
|+.+.|..+|.+. ..+...|...+.--...|+.+.+..+++...+
T Consensus 368 ~~~~~aR~l~er~--~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 368 GDEENARALFKRL--EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHS--CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777775 22455666666666677888888887776654
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.011 Score=35.54 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=64.9
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
...|..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|.+.++...+.. +.+...+..+-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3677778888999999999999999988754 2356788888899999999999999999998764 3455666666665
Q ss_pred HHhC
Q 045511 111 YVTV 114 (209)
Q Consensus 111 ~~~~ 114 (209)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.0031 Score=50.86 Aligned_cols=94 Identities=7% Similarity=-0.049 Sum_probs=72.5
Q ss_pred HHHHHHHhCCChhhHHHHHHhcC-------CC----cHhHHHHHHHHHHhCCChHHHHHHHhhC---------CCCCCH-
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVV-------FP----DVVTWTTIISGLSKCGFHKEAIDMFCGI---------DVKPNA- 164 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m---------~~~p~~- 164 (209)
..+.-+.+.|++++|+.++++.. .+ ...+++.+...|...|++++|+.++.+. .-.|+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34556778899999999987661 12 2568999999999999999999998877 444555
Q ss_pred HhHHHHHHHhccccchhHHHHHHHHH---HHhccCCCc
Q 045511 165 NTLVSVLSACSSLGSRKLGKAIHAHS---LRNLNENNI 199 (209)
Q Consensus 165 ~t~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~p~~ 199 (209)
.+++.+-..|...|++++|+.++.+. .+.-+.|+-
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 57899999999999999999999864 333445543
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.0065 Score=49.00 Aligned_cols=81 Identities=7% Similarity=-0.050 Sum_probs=64.9
Q ss_pred ccccHHHHHHHHHHHHHhc---cCc---c-HhHHHHHHHHHHhCCChhhHHHHHHhcC----------CCc-HhHHHHHH
Q 045511 78 LAHAHQKGLEIHAHVIKYG---HLH---D-IFIQNSLLHFYVTVKDIFSAHQIFNSVV----------FPD-VVTWTTII 139 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g---~~~---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~-~~~~~~li 139 (209)
..|++++|+.+++..++.. +.| + ..+++.|...|...|++++|+.++.+.. .|+ ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999988776542 223 2 3689999999999999999999998761 243 46799999
Q ss_pred HHHHhCCChHHHHHHHhhC
Q 045511 140 SGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m 158 (209)
..|...|++++|+.+|.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999999875
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.79 E-value=0.023 Score=37.89 Aligned_cols=111 Identities=5% Similarity=-0.096 Sum_probs=86.9
Q ss_pred cccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC-CCcHhHHHHHHHHHHh----CCChHHHHH
Q 045511 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVTWTTIISGLSK----CGFHKEAID 153 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~a~~ 153 (209)
.+++++|.++|+...+.| .|+.. |-..|...+.+++|.++|.+.. .-+...+..+-..|.. .+++++|++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467889999999999888 33333 6666777788899999998873 4567778888888887 899999999
Q ss_pred HHhhC-CCCCCHHhHHHHHHHhcc----ccchhHHHHHHHHHHHhcc
Q 045511 154 MFCGI-DVKPNANTLVSVLSACSS----LGSRKLGKAIHAHSLRNLN 195 (209)
Q Consensus 154 ~~~~m-~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 195 (209)
.|.+- .. -+...+..+-..|.. .++.++|.+.+....+.|.
T Consensus 83 ~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99998 21 345666666666766 7899999999999888874
No 204
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.77 E-value=0.083 Score=40.94 Aligned_cols=176 Identities=10% Similarity=0.043 Sum_probs=117.6
Q ss_pred chHhHHHHHHHHhhCCCcccHHHHHHHHHcCCC--ccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-HHHHHHHHH
Q 045511 14 SFKQLNQIHAQIIKIPQPHILNTLLKLLTQSST--PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-HQKGLEIHA 90 (209)
Q Consensus 14 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~ 90 (209)
++..+..+... .+.+..+|+.--..+.+.++ +++++.+++++.+... -|...|+----.+...|. .+++.+.++
T Consensus 93 EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 93 ELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444433 22366888888777777774 7899999999998653 466777776666777777 588999999
Q ss_pred HHHHhccCccHhHHHHHHHHHHhC--------------CChhhHHHHHHhcC---CCcHhHHHHHHHHHHhC--------
Q 045511 91 HVIKYGHLHDIFIQNSLLHFYVTV--------------KDIFSAHQIFNSVV---FPDVVTWTTIISGLSKC-------- 145 (209)
Q Consensus 91 ~m~~~g~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~-------- 145 (209)
.+.+.. +-|...|+..-..+.+. +.++++.+.++... .-|..+|+-+--.+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~ 248 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSV 248 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccch
Confidence 998876 56777787766665554 44677888887762 33566676444344343
Q ss_pred ---CChHHHHHHHhhC-CCCCCHH----hHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 146 ---GFHKEAIDMFCGI-DVKPNAN----TLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 146 ---g~~~~a~~~~~~m-~~~p~~~----t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
+.++++++.++++ ...||.. +...+..+....|..+++...+..+.+-
T Consensus 249 ~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3577889999998 7778762 2222233333456777778888777654
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.72 E-value=0.0029 Score=43.64 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=74.2
Q ss_pred hccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh----------hhHHHHHHhcC--CC-cHhHHHHHHHHHH
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI----------FSAHQIFNSVV--FP-DVVTWTTIISGLS 143 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~--~~-~~~~~~~li~~~~ 143 (209)
.+.+.+++|.+.++...+.. +.+...|+.+-.++...+++ ++|...|++.. .| +..+|..+=.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45566777777777777665 44566666666666666554 47777777762 23 4667777777777
Q ss_pred hC-----------CChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 144 KC-----------GFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 144 ~~-----------g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
.. |++++|.+.|++. .+.|+...|...++.+ +++-+++-.+...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~------~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------HhCHhccCcccccc
Confidence 66 4899999999988 8889887776555543 34445554444443
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.65 E-value=0.014 Score=47.05 Aligned_cols=86 Identities=8% Similarity=-0.021 Sum_probs=67.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHhc---cCcc----HhHHHHHHHHHHhCCChhhHHHHHHhcC----------CCc-HhH
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYG---HLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVV----------FPD-VVT 134 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g---~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~-~~~ 134 (209)
+..+.+.|++++|++.++..++.. +.|+ ..+++.|...|...|++++|+.++.+.. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667789999999988887542 2222 4588999999999999999999988761 233 457
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhC
Q 045511 135 WTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 135 ~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
++.|-..|...|++++|+.++.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 899999999999999999988876
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.58 E-value=0.042 Score=45.01 Aligned_cols=122 Identities=9% Similarity=0.091 Sum_probs=91.1
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHH--HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQ--ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
..|-..+....+.+..+.|..+|++. +.. ..+...|.. .+.... .++.+.|..+|+...+.. +-++..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 56777777777788899999999999 321 123334432 222222 236999999999988764 334556777888
Q ss_pred HHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
...+.|+.+.|..+|+... .....|...+.-=...|+.+.+..++.+.
T Consensus 363 ~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8889999999999999985 46788999998878889999999988877
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.39 E-value=0.0031 Score=39.01 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=26.4
Q ss_pred HhccccHHHHHHHHHHHHHhccCccHh-HHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 76 CSLAHAHQKGLEIHAHVIKYGHLHDIF-IQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+.+.|++++|.+.++...+.. +.+.. .+..+-.+|...|++++|.+.|++.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555443 22334 5555555555555555555555554
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.39 E-value=0.12 Score=40.57 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=84.0
Q ss_pred hCCCcccHHHHHHHHHcC-----CCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhcc---c--cHHHHH---HHHHHH
Q 045511 27 KIPQPHILNTLLKLLTQS-----STPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLA---H--AHQKGL---EIHAHV 92 (209)
Q Consensus 27 ~~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~---~--~~~~a~---~~~~~m 92 (209)
.+.+...|..++.+.... .+..+|..+|++..+. .|+- ..|..+--++... + ...... +.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 334668888888766532 2346788888888774 3542 3344333333210 0 001111 112211
Q ss_pred HH-hccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHH
Q 045511 93 IK-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLV 168 (209)
Q Consensus 93 ~~-~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~ 168 (209)
.. ..-+.++.+|..+-..+...|++++|...+++.. .|+...|..+=..+.-.|++++|.+.|.+. .+.|...||.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 11 1224566777777777777788888888888773 366666656667777788888888888777 7777777765
Q ss_pred HH
Q 045511 169 SV 170 (209)
Q Consensus 169 ~l 170 (209)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.22 E-value=0.091 Score=45.09 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=64.4
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChh
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 118 (209)
....+.|++++|+++.+.+ .+...|..+-..+.+.++++.|++.|..+.+. ..+...|...|+.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDL---------ESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------HHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------hhhHHHHHHcCCHH
Confidence 3456789999999886554 46688999999999999999999999887543 23444444455554
Q ss_pred hHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 119 SAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
...++-+..... .-++.-..+|.+.|++++|.+++.++
T Consensus 725 ~~~~~~~~a~~~--~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 725 GLVTLAKDAETT--GKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444333222110 11233333444556666666666665
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.20 E-value=0.11 Score=43.42 Aligned_cols=146 Identities=10% Similarity=0.041 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHcCCC----------ccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc--cHHHHHHHHHHHHHhccCc
Q 045511 32 HILNTLLKLLTQSST----------PQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH--AHQKGLEIHAHVIKYGHLH 99 (209)
Q Consensus 32 ~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~ 99 (209)
.+|+.-=..+.+.|+ ++++.+.++.+.+... -+...|+.--..+.+.+ +++++.+.++.+.+.. +.
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~ 141 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER 141 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cc
Confidence 556554444444455 6777777777766442 35556666555666666 5577777777777665 45
Q ss_pred cHhHHHHHHHHHHhCC-ChhhHHHHHHhcCC---CcHhHHHHHHHHHHhC--------------CChHHHHHHHhhC-CC
Q 045511 100 DIFIQNSLLHFYVTVK-DIFSAHQIFNSVVF---PDVVTWTTIISGLSKC--------------GFHKEAIDMFCGI-DV 160 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m-~~ 160 (209)
|-.+|+.---.+.+.| ..+++.+.++++.+ .|..+|+-.-..+.+. +.++++++.++.. ..
T Consensus 142 N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 6667776666666667 67777777777643 2455555554444431 3456666666655 44
Q ss_pred CCCH-HhHHHHHHHhccccc
Q 045511 161 KPNA-NTLVSVLSACSSLGS 179 (209)
Q Consensus 161 ~p~~-~t~~~li~~~~~~g~ 179 (209)
.|+. ..|.-.--.+.+.+.
T Consensus 222 ~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 222 DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCSHHHHHHHHHHSCCCC
T ss_pred CCCCccHHHHHHHHHhcCCC
Confidence 4533 444444334444443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.14 E-value=0.12 Score=40.60 Aligned_cols=137 Identities=6% Similarity=-0.044 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHhccCcc-HhHHHHHHHHHH----hCCC----hh---hHHHHH
Q 045511 62 SSYNHYTFTQALKACSLA-----HAHQKGLEIHAHVIKYGHLHD-IFIQNSLLHFYV----TVKD----IF---SAHQIF 124 (209)
Q Consensus 62 ~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~----~~g~----~~---~a~~~~ 124 (209)
.+.+...|...+.+.... ....+|..+|+...+.. |+ ...|..+--+|. ..+. .. .+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 456778899988877543 34578888898888764 44 334443333332 1111 11 122211
Q ss_pred Hhc--CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchh
Q 045511 125 NSV--VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201 (209)
Q Consensus 125 ~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 201 (209)
..+ ...+...|.++-..+...|++++|...+++. .+.|+...|..+-..+...|++++|.+.++..... .|...+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 122 2356778888877777789999999999999 66688888888888888999999999999877666 454444
Q ss_pred H
Q 045511 202 D 202 (209)
Q Consensus 202 ~ 202 (209)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.12 E-value=0.16 Score=33.99 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=64.0
Q ss_pred CChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 115 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
|++......+-.+. .+...++.-++.+...|.-++-.+++.++ +-+|+....-.+-.+|.+.|+..++.+++.+.-+
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34444444443332 34455678889999999999999999994 7888999999999999999999999999999999
Q ss_pred hccC
Q 045511 193 NLNE 196 (209)
Q Consensus 193 ~~~~ 196 (209)
+|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 9864
No 214
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.75 E-value=0.23 Score=33.00 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=42.1
Q ss_pred chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 49 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+..+-++.+...++.|+.....+.+++|.+.+++..|..+|+.++.+- .+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555666667778888888888888888888888888888777553 333556766653
No 215
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.58 E-value=0.22 Score=31.30 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=48.3
Q ss_pred chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 49 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
+..+-++.+....+.|+.....+.+++|.+.+++..|..+|+.++.+- .....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455667778888899999999999999999999999999999888654 233557777764
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.49 E-value=0.061 Score=46.17 Aligned_cols=77 Identities=8% Similarity=-0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 114 (209)
..++..+.+.|..++|.++.+. |. .-.......|+++.|.++.+.+ .+...|..|-..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5556666666666666655421 11 1123345567777777764332 4677899999999999
Q ss_pred CChhhHHHHHHhcCC
Q 045511 115 KDIFSAHQIFNSVVF 129 (209)
Q Consensus 115 g~~~~a~~~~~~~~~ 129 (209)
|+++.|+++|..+..
T Consensus 695 ~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD 709 (814)
T ss_dssp TCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHccC
Confidence 999999999988754
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.48 E-value=0.92 Score=37.79 Aligned_cols=147 Identities=4% Similarity=-0.034 Sum_probs=107.2
Q ss_pred CCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhcccc----------HHHHHHHHHHHHHhccCccHhHHHHHHHHHH
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAHA----------HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 112 (209)
....++|++.++++...+ |+. ..|+.-=..+.+.|+ ++++.+.++.+.+.. +-+..+|+.---.+.
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344457899999998854 443 445544444444555 899999999999876 557788888888888
Q ss_pred hCC--ChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCC-ChHHHHHHHhhC-CCCCC-HHhHHHHHHHhccc-------
Q 045511 113 TVK--DIFSAHQIFNSVV---FPDVVTWTTIISGLSKCG-FHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSL------- 177 (209)
Q Consensus 113 ~~g--~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m-~~~p~-~~t~~~li~~~~~~------- 177 (209)
+.| +++++.+.++++. ..|..+|+----.+.+.| .++++++.+.++ ...|+ ...|+..-..+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 888 6799999999983 457778887777777888 899999999999 66664 45666655554432
Q ss_pred -------cchhHHHHHHHHHHHh
Q 045511 178 -------GSRKLGKAIHAHSLRN 193 (209)
Q Consensus 178 -------g~~~~a~~~~~~~~~~ 193 (209)
+.++++.+.+......
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 5677888877766654
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.25 E-value=0.08 Score=32.29 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=56.4
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHY-TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
...+.+.|++++|...|++..+.. +.+.. .+..+-.++...|++++|.+.|+...+... .+...+.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHH--------HH
Confidence 445678899999999999988753 22446 788888888999999999999999987652 22333311 44
Q ss_pred hhhHHHHHHhc
Q 045511 117 IFSAHQIFNSV 127 (209)
Q Consensus 117 ~~~a~~~~~~~ 127 (209)
++++...|++.
T Consensus 77 ~~~a~~~~~~~ 87 (99)
T 2kc7_A 77 VMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.42 Score=33.38 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=79.6
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhh
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS 119 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 119 (209)
...+.|+++.|.++.+.+ -+...|..+-......|+++.|++.|....+ +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344567777777776654 3567777777777777777777777765543 3344444555566555
Q ss_pred HHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHH
Q 045511 120 AHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 120 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
-.++-+... ...-+|.-...+...|+++++.++|.+.|..|....+.. ..|.-+.|.++.+.+
T Consensus 79 L~kla~iA~--~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~------t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQ--TREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAK------ANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH------HTTCHHHHHHHHHHT
T ss_pred HHHHHHHHH--HCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHH------HcCcHHHHHHHHHHh
Confidence 444432211 011255666667778999999999988866665544322 245677788887654
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.91 E-value=0.22 Score=30.68 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=34.0
Q ss_pred cHhHHHHHHHHHHhCCC---hhhHHHHHHhcC--C-CcHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCC
Q 045511 100 DIFIQNSLLHFYVTVKD---IFSAHQIFNSVV--F-PDVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPN 163 (209)
Q Consensus 100 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~ 163 (209)
|+..+..+-.++...++ .++|..++++.. . .+......+-..+.+.|++++|+..|.++ ...|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44444444444443332 466666666552 2 23445555556666666666666666666 44444
No 221
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.72 E-value=0.076 Score=36.47 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC-----------CChhhHHHHHHhcC--CCcHhHHHHHHH
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV-----------KDIFSAHQIFNSVV--FPDVVTWTTIIS 140 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~--~~~~~~~~~li~ 140 (209)
+++|...|+..++.. +-+..+|..+-.+|.+. |++++|.+.|++.. .|+...|..-+.
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 446666666666543 22445666666666655 36777777777663 455544444333
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.28 E-value=0.2 Score=33.55 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 97 (209)
....+..++.+...|+-+.-.+++.++.. +-+|+....-.+-+||.+.|+..++.+++.+.-++|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34455555555555555555555555332 2345555566666666666666666666666665554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.26 E-value=0.26 Score=33.57 Aligned_cols=62 Identities=11% Similarity=-0.027 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHhccc---cHHHHHHHHHHHHHhccCc--cHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 65 NHYTFTQALKACSLAH---AHQKGLEIHAHVIKYGHLH--DIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+..+--.+-.++++.+ +++++..+++...+.. .| ....+=.|--+|.+.|++++|.+.++..
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3333333333344443 4445555555555443 12 1222222333345555555555555544
No 224
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.51 Score=40.69 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCC-ccchHHHHHHhhhCCCCCCHHH-H-HHHHHHHhccccHH-HHHHHHHHHHHh------ccCc-cH--
Q 045511 35 NTLLKLLTQSST-PQNAIPLYNKMLNCPSSYNHYT-F-TQALKACSLAHAHQ-KGLEIHAHVIKY------GHLH-DI-- 101 (209)
Q Consensus 35 ~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~t-~-~~ll~~~~~~~~~~-~a~~~~~~m~~~------g~~~-~~-- 101 (209)
..++..+...++ .+.|..+|+++.... |...+ | ..++..+.+.++-+ +|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 477999999998864 43333 2 23334333333221 233333333221 1111 11
Q ss_pred --------hHHHHHHHHHHhCCChhhHHHHHHhcC--CC-cHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 102 --------FIQNSLLHFYVTVKDIFSAHQIFNSVV--FP-DVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 102 --------~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.....=.+.|...|+++.|.++-.+.+ .| +..+|-.|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122222456778999999999998873 34 5789999999999999999999999988
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.14 E-value=0.52 Score=29.37 Aligned_cols=61 Identities=7% Similarity=-0.102 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhc------cCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVIKYG------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
.-+-.+-..+.+.++++.|..+|+...+.- -.+...++..|..+|.+.|+++.|...+++.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 334455555666677777777776665442 1223445666666666666666666666554
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.10 E-value=0.33 Score=33.01 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=63.7
Q ss_pred cccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC---ChhhHHHHHHhcC--C-C--cHhHHHHHHHHHHhCCChHH
Q 045511 79 AHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK---DIFSAHQIFNSVV--F-P--DVVTWTTIISGLSKCGFHKE 150 (209)
Q Consensus 79 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~--~-~--~~~~~~~li~~~~~~g~~~~ 150 (209)
.+.+..+++-|....+.|. ++..+.-.+--++++++ +++++..++++.. . | +...+=.+--+|.+.|++++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456667777777776664 78888888888899988 6679998888773 2 3 23344445567799999999
Q ss_pred HHHHHhhC-CCCCCHH
Q 045511 151 AIDMFCGI-DVKPNAN 165 (209)
Q Consensus 151 a~~~~~~m-~~~p~~~ 165 (209)
|.+.++.. .+.|+-.
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 99999999 8888543
No 227
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.00 E-value=1.7 Score=33.86 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=98.4
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC-C
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNH-YTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV-K 115 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g 115 (209)
....+.+..++|+++++++...+ |+. ..|+.-=..+...+ .++++.++++.+++.. +-+..+|+.---.+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33344555568999999998754 443 44555555555566 5889999999988765 45667787776666665 6
Q ss_pred -ChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChH--------HHHHHHhhC-CCCC-CHHhHHHHHHHhccccc--
Q 045511 116 -DIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHK--------EAIDMFCGI-DVKP-NANTLVSVLSACSSLGS-- 179 (209)
Q Consensus 116 -~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~-- 179 (209)
+++++.++++.+.+ .|..+|+----.+.+.|.++ ++++.+.++ ...| |...|+..-....+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 88899999988854 34555554333333334444 788888887 4444 55677777666666664
Q ss_pred -----hhHHHHHHHHHHHh
Q 045511 180 -----RKLGKAIHAHSLRN 193 (209)
Q Consensus 180 -----~~~a~~~~~~~~~~ 193 (209)
++++.+......+.
T Consensus 219 ~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHh
Confidence 45666666555443
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.81 Score=36.90 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=32.1
Q ss_pred hhccCCCcchHhHHHHHHHHhhCCC----cccHHHHHHHHHcCCCccchHHHHHHhh
Q 045511 6 LKSLKPTLSFKQLNQIHAQIIKIPQ----PHILNTLLKLLTQSSTPQNAIPLYNKML 58 (209)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~ 58 (209)
+..+++..|.+.+..+.+.-....| ......++..|.+.|+++...+.+..+.
T Consensus 27 l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 27 LAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3335556666666666554322222 2557778888888888887766655543
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.66 E-value=0.33 Score=38.40 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCChHHHHHHHhhC--------CCCCCHHhHH
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGFHKEAIDMFCGI--------DVKPNANTLV 168 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--------~~~p~~~t~~ 168 (209)
..++..+...|+.++|...+.... ..+...|-.+|.+|.+.|+..+|++.|++. |+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 456667778899999988877762 246778999999999999999999998887 9999887643
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.38 E-value=0.00012 Score=59.30 Aligned_cols=154 Identities=12% Similarity=-0.004 Sum_probs=94.1
Q ss_pred HhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHH
Q 045511 25 IIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104 (209)
Q Consensus 25 ~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 104 (209)
+....|+..|..+|....++|++++-...+.-.++..-.| ..=+.++-+|++.+++.+.++++ -.||..-.
T Consensus 77 yIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~i 147 (624)
T 3lvg_A 77 YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHI 147 (624)
T ss_dssp SCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCT
T ss_pred HHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccH
Confidence 3444566778888888888888888777776555543223 33457777888887766554443 24666666
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcC------------------------CCcHhHHHHHHHHHHhCCChHHHHHHHhhCCC
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVV------------------------FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDV 160 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 160 (209)
..+-+-|...|.++.|.-+|..++ ..+..||--+-.+|...+.+..|.-.--.+
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLni-- 225 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI-- 225 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHH--
T ss_pred HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchh--
Confidence 677777777777877777776652 135567777777777777665542211111
Q ss_pred CCCHHhHHHHHHHhccccchhHHHHHHHH
Q 045511 161 KPNANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 161 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
-....-...+++.|.+.|-+++...+++-
T Consensus 226 IvhadeL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 226 VVHADELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp HCCSSCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred cccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11111223356667777777776666543
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.28 E-value=0.62 Score=28.99 Aligned_cols=66 Identities=9% Similarity=-0.070 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHcCCCccchHHHHHHhhhCC------CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc
Q 045511 31 PHILNTLLKLLTQSSTPQNAIPLYNKMLNCP------SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96 (209)
Q Consensus 31 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 96 (209)
...+-.+-..+.+.|+++.|..+|+...+.- -.+....+..+-.++.+.|+++.|...++...+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3455667777888899999999988876521 12456778888889999999999999998888754
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.41 E-value=0.52 Score=37.24 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhC-CCCC-CHHhHHHHHHHhccccchhHHHHHHHHHHH-----hccCCCchhH
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLGSRKLGKAIHAHSLR-----NLNENNIILD 202 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 202 (209)
+...++..+...|+++++...+..+ ...| +...+..++.++.+.|+..+|.+.|+...+ .|+.|.+.+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445677788899999999888888 4444 777999999999999999999999997543 4999987653
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.98 E-value=1.4 Score=38.07 Aligned_cols=123 Identities=8% Similarity=0.044 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC-hhhHHHHHHhc-----------CCCcHh-
Q 045511 68 TFTQALKACSLAHA-HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD-IFSAHQIFNSV-----------VFPDVV- 133 (209)
Q Consensus 68 t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~-----------~~~~~~- 133 (209)
--..+++.+...++ .+.+.++|+.+.+.....+......++..+.+.++ --+|.+++.+. ...+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34566777776766 58899999999887533333333444444444432 22344444322 222211
Q ss_pred ----HH-HHH----HHHHHhCCChHHHHHHHhhC-CCCCCH-HhHHHHHHHhccccchhHHHHHHHHH
Q 045511 134 ----TW-TTI----ISGLSKCGFHKEAIDMFCGI-DVKPNA-NTLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 134 ----~~-~~l----i~~~~~~g~~~~a~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
.+ ..| .+-+...|+++.|+.+-++- ...|+. .||..|.++|...|+++.|.-.+.-+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11 112 34566789999999999988 778875 79999999999999999999888754
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.46 E-value=2.6 Score=29.40 Aligned_cols=110 Identities=10% Similarity=-0.058 Sum_probs=79.9
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
.+...|..|-....+.|+++-|.+-|.+... +..+.-.|...|+.+....+-+.-...| -+|...
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af 96 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSML 96 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHH
Confidence 5678999999999999999999999998865 5666667777788776665544444443 356777
Q ss_pred HHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
..+...|+++++.++|.+..+.....+. .-..|.-+.|.++..++
T Consensus 97 ~~~l~lGdv~~~i~lL~~~~r~~eA~~~-----A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEGGSLPLAYAV-----AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCHHHHHHH-----HHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHCCChHHHHHH-----HHHcCcHHHHHHHHHHh
Confidence 7788899999999999887553322111 11256677788887776
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.35 E-value=0.51 Score=35.84 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHcC-----CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhccC--ccHhH
Q 045511 32 HILNTLLKLLTQS-----STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA-HAHQKGLEIHAHVIKYGHL--HDIFI 103 (209)
Q Consensus 32 ~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~--~~~~~ 103 (209)
..|..+-..|.+. |+.++|.+.|++-.+-+-.-+..++...-..++.. |+.+++.+.++..++.... |+...
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 5677777777774 77777777777777633111356666666666664 7777777777777776655 55544
Q ss_pred HHHH
Q 045511 104 QNSL 107 (209)
Q Consensus 104 ~~~l 107 (209)
.|.+
T Consensus 280 an~~ 283 (301)
T 3u64_A 280 LVIL 283 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.15 E-value=1.5 Score=33.36 Aligned_cols=105 Identities=11% Similarity=0.030 Sum_probs=74.3
Q ss_pred cHhHHHHHHH-HHHhC--CC------hhhHHHHHHhcC--CCc---HhHHHHHHHHHHh-----CCChHHHHHHHhhC-C
Q 045511 100 DIFIQNSLLH-FYVTV--KD------IFSAHQIFNSVV--FPD---VVTWTTIISGLSK-----CGFHKEAIDMFCGI-D 159 (209)
Q Consensus 100 ~~~~~~~ll~-~~~~~--g~------~~~a~~~~~~~~--~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m-~ 159 (209)
....|..++. +++.. |+ ...|+..+++.. .|+ -..|+.+-..|.+ -|+.++|.+.|++- .
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 3456766665 44442 33 344555555542 344 4588888888988 49999999999998 7
Q ss_pred CCCC--HHhHHHHHHHhcc-ccchhHHHHHHHHHHHhccC--CCchhHhH
Q 045511 160 VKPN--ANTLVSVLSACSS-LGSRKLGKAIHAHSLRNLNE--NNIILDNA 204 (209)
Q Consensus 160 ~~p~--~~t~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~--p~~~~~~~ 204 (209)
+.|+ ..++...-..+++ .|+.+.+.+.++...+.... |+....+.
T Consensus 233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 7774 5677777888887 49999999999999888766 76665554
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.11 E-value=1.7 Score=26.58 Aligned_cols=45 Identities=2% Similarity=-0.148 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 82 HQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 82 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
.+++..+++..++.. +-++.....+-..+.+.|++++|...|..+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444432 223334444444445555555555555444
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.20 E-value=2.3 Score=26.73 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHHHH
Q 045511 67 YTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTIISG 141 (209)
Q Consensus 67 ~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~ 141 (209)
..-......+-+.. +.-++..-++.+....+.|++.+..+.+++|-|.+++.-|.++|+.+. ......|.-++.-
T Consensus 10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 33344555565665 666777888888888899999999999999999999999999998873 2334457666653
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.79 E-value=3.4 Score=28.09 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHcCCCc------cchHHHHHHhhhCCCCCCHHH----HHHHHHHH---hccccHHHHHHHHHHHHHhc
Q 045511 30 QPHILNTLLKLLTQSSTP------QNAIPLYNKMLNCPSSYNHYT----FTQALKAC---SLAHAHQKGLEIHAHVIKYG 96 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~------~~a~~l~~~m~~~g~~p~~~t----~~~ll~~~---~~~~~~~~a~~~~~~m~~~g 96 (209)
|+.+|=..+...-+.|++ ++..++|++... .++|+... |.-+.--| ...+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 446666666666666777 666666665544 24454211 11110000 11255666666666665443
Q ss_pred cCccHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 97 HLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
-.. ..+|-..-..=.+.|++..|.+++..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 333 44555555555556666666666554
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.73 E-value=2 Score=29.26 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=47.8
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHH
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLH 109 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 109 (209)
.+++++|.++|+.+.+.+-+. ...|-..-..=.++|+++.|.+++..-...+.+|.. ..++.|.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHH
Confidence 489999999999997653223 666776677778999999999999999887755543 4444443
No 241
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.29 E-value=0.85 Score=25.52 Aligned_cols=56 Identities=21% Similarity=0.070 Sum_probs=37.4
Q ss_pred hccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCC
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYN 65 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 65 (209)
+++.+....+.+.++.+.| |+.....+--..-...|+++.|...+-+|...+..|+
T Consensus 2 ~~~~~~~~ee~l~~L~emF---P~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 2 SSGSSGCSEEDLKAIQDMF---PNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CSCSSSSCHHHHHHHHHHC---SSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCCCCCCHHHHHHHHHHC---CCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 3566666777778887777 5554432222222456889999999988888777775
No 242
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=88.84 E-value=6.7 Score=30.21 Aligned_cols=159 Identities=6% Similarity=-0.006 Sum_probs=105.0
Q ss_pred ccHHHHHHH---HHcCCCcc-chHHHHHHhhhCCCCCCHHH-HHHHHHHHhcccc----------HHHHHHHHHHHHHhc
Q 045511 32 HILNTLLKL---LTQSSTPQ-NAIPLYNKMLNCPSSYNHYT-FTQALKACSLAHA----------HQKGLEIHAHVIKYG 96 (209)
Q Consensus 32 ~~~~~li~~---~~~~g~~~-~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~m~~~g 96 (209)
..|..++.. ..+.|.++ +|+.+++.+...+ |+..| |+.-=..+...+. ++++..+++.+.+..
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 455444443 34567776 7999999998854 55433 3332222222222 678888898888765
Q ss_pred cCccHhHHHHHHHHHHhCC--ChhhHHHHHHhcC---CCcHhHHHHHHHHHHhCCC-hHHHHHHHhhC-CCCC-CHHhHH
Q 045511 97 HLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVV---FPDVVTWTTIISGLSKCGF-HKEAIDMFCGI-DVKP-NANTLV 168 (209)
Q Consensus 97 ~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m-~~~p-~~~t~~ 168 (209)
+-+..+|+.---.+.+.| +++++..+++.+. ..|..+|+----.+...|. ++++++.+..+ ...| |...|+
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 557788887777777777 4889999999883 4577777777677777787 58999999988 4455 445565
Q ss_pred HHHHHhccc--------------cchhHHHHHHHHHHHh
Q 045511 169 SVLSACSSL--------------GSRKLGKAIHAHSLRN 193 (209)
Q Consensus 169 ~li~~~~~~--------------g~~~~a~~~~~~~~~~ 193 (209)
..-....+. +.++++.+.+......
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 554444333 4566777776666554
No 243
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=88.12 E-value=0.92 Score=32.42 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=38.8
Q ss_pred HHHHHHhCCChhhHHHHHHhcCCCcH---hHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHH---hHHHHHHHhccccch
Q 045511 107 LLHFYVTVKDIFSAHQIFNSVVFPDV---VTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLSACSSLGSR 180 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~~g~~ 180 (209)
.+...++.|+.+-+..+++.-..++. ..-.+.+...+..|+.+-+..+++. |..++.. -.+. +...+..|+.
T Consensus 119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~-L~~A~~~~~~ 196 (241)
T 1k1a_A 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSA-LHSASGRGLL 196 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBH-HHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCH-HHHHHHcCCH
Confidence 34444455666666666554322211 1112233344455666555554444 4444332 1222 3333344554
Q ss_pred hHHHHHHHHHHHhccCCCc
Q 045511 181 KLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 181 ~~a~~~~~~~~~~~~~p~~ 199 (209)
+ +.+.+.+.|..|+.
T Consensus 197 ~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 197 P----LVRTLVRSGADSSL 211 (241)
T ss_dssp H----HHHHHHHTTCCTTC
T ss_pred H----HHHHHHhcCCCCCC
Confidence 4 33444556665543
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.86 E-value=4.1 Score=26.61 Aligned_cols=89 Identities=9% Similarity=-0.063 Sum_probs=51.6
Q ss_pred HHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhh---HHHHHHhcCCCc-----HhHHHHHHHHHHhCC
Q 045511 75 ACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIFNSVVFPD-----VVTWTTIISGLSKCG 146 (209)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-----~~~~~~li~~~~~~g 146 (209)
.-.....+..+++-|......|. ++..+--.+--+++++.+..+ +..++++..+.+ ....=-+--|+.+.|
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 33344455555555655555553 666666666667777766555 666666653222 122223346677778
Q ss_pred ChHHHHHHHhhC-CCCCCH
Q 045511 147 FHKEAIDMFCGI-DVKPNA 164 (209)
Q Consensus 147 ~~~~a~~~~~~m-~~~p~~ 164 (209)
++++|.+.++.+ .+.|+-
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 888887777777 666643
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.21 E-value=4.9 Score=26.74 Aligned_cols=78 Identities=13% Similarity=0.045 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcC---CCcHhHHHHHH
Q 045511 64 YNHYTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVTWTTII 139 (209)
Q Consensus 64 p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li 139 (209)
++...-....+.+-+.. |.-+..+-++.+....+.|++.+..+.+++|-+.+++.-|.++|+.+. .+....|.-++
T Consensus 50 t~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 50 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34444444555555555 666677778888888899999999999999999999999999998873 34445576666
Q ss_pred HH
Q 045511 140 SG 141 (209)
Q Consensus 140 ~~ 141 (209)
.-
T Consensus 130 qE 131 (152)
T 2y69_E 130 QE 131 (152)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 246
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.69 E-value=2.2 Score=27.90 Aligned_cols=76 Identities=11% Similarity=-0.045 Sum_probs=35.2
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH---HHHHHHHHHHHHhccCc--cHhHHHHHHHHHHhCCChhhHHHHH
Q 045511 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH---QKGLEIHAHVIKYGHLH--DIFIQNSLLHFYVTVKDIFSAHQIF 124 (209)
Q Consensus 50 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 124 (209)
+.+-|.+....|. |+..+-=.+-.++.+.... ..+..+++.+.+.+ .| .....=.|--++.+.|++++|.+.+
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444433333 3333333333334444433 33555566555543 12 2222333444666666777776666
Q ss_pred Hhc
Q 045511 125 NSV 127 (209)
Q Consensus 125 ~~~ 127 (209)
+.+
T Consensus 98 ~~l 100 (126)
T 1nzn_A 98 RGL 100 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.17 E-value=11 Score=29.95 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=75.6
Q ss_pred CcchHhHHHHHHHHhh-----CCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC--CHHHHHHHHHHHhccccHHH
Q 045511 12 TLSFKQLNQIHAQIIK-----IPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALKACSLAHAHQK 84 (209)
Q Consensus 12 ~~a~~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~ 84 (209)
+.-.+.+.+....... .--..+...+-..+.+.|+.++|.+.|.++...-..+ -...+-.++..+...+++..
T Consensus 107 ~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~ 186 (429)
T 4b4t_R 107 ESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLY 186 (429)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH
Confidence 3445555555443222 1122578889999999999999999999998753333 34567777888889999999
Q ss_pred HHHHHHHHHHh---ccCccHh----HHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 85 GLEIHAHVIKY---GHLHDIF----IQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 85 a~~~~~~m~~~---g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+...+...... +-.|+.. .|..+ .+...+++.+|-+.|-+.
T Consensus 187 ~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl--~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 187 VKEKLEAVNSMIEKGGDWERRNRYKTYYGI--HCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHHHHHHTTCCCTHHHHHHHHHHHH--GGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHHH--HHHHhChHHHHHHHHHHH
Confidence 99988877543 2222221 22222 234568888888888665
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.36 E-value=5 Score=25.13 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
..++|.-|-+.+...+- ...+--.-+.++..+|++++|..+.+....||...|-++-. .+.|..+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 56788888777776663 33333344557788899999999999888899988887755 3677777777777666
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.18 E-value=5.2 Score=25.12 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.+.++|.-|-+.+...|- ...+--.-+.++..+|++++|..+.+....||...|-++-.+ +.|..+++..-+.++
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 356788888888777663 333333445578889999999999999999999998887653 567777777777666
No 250
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=81.32 E-value=2.8 Score=27.49 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCc---HhHHHHHHHHHHhCCC--hHHHHHHHhhC---CCCCCHHh---HHHHH
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVTWTTIISGLSKCGF--HKEAIDMFCGI---DVKPNANT---LVSVL 171 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m---~~~p~~~t---~~~li 171 (209)
..+.++.=|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+ |+-+.... |..++
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 45678888888899999999999886653 3445556666666542 34566777766 43333322 33333
Q ss_pred HHhcccc-chhHHHHHHHHHHHhccCC
Q 045511 172 SACSSLG-SRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 172 ~~~~~~g-~~~~a~~~~~~~~~~~~~p 197 (209)
..+-... |.-.|.+++..+..+.+.-
T Consensus 89 ~~l~Dl~lDiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 89 NEIPDINLDVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred hhChHhhcCccchHHHHHHHHHHHHHC
Confidence 3333232 3445666666665554433
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.03 E-value=8 Score=24.24 Aligned_cols=60 Identities=18% Similarity=0.040 Sum_probs=44.4
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchhH
Q 045511 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIILD 202 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 202 (209)
++.+.+.|++++|..+...+ ..||...+-.+-. .+.|..++++.-+.++..+| .|....|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~-c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGN-PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTC-CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC-CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45677899999999998886 5899988866533 47788888888777787776 4443333
No 252
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=81.03 E-value=16 Score=27.77 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCCCC---HHhHHHHHHHhcccc--chhHHHHHHHHHHHhccCCCchhHh
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGIDVKPN---ANTLVSVLSACSSLG--SRKLGKAIHAHSLRNLNENNIILDN 203 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m~~~p~---~~t~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~ 203 (209)
..+.++.-|...|+.++|.+.+++++. |. ......+..+.-+.+ ..+....++..+.+.|+-+......
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC-CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 467899999999999999999999832 22 234455555665543 3566778888888888766554433
No 253
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=80.87 E-value=4.7 Score=27.69 Aligned_cols=153 Identities=8% Similarity=-0.026 Sum_probs=73.7
Q ss_pred HHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhCCChh
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTVKDIF 118 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~ 118 (209)
.+..|+.+.+..++..-...--..|..-.+. +...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 4455666666555543220001122222223 33334556543 4455555665554321 234455566778888
Q ss_pred hHHHHHHhcC-C---CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCC---CHHhHHHHHHHhccccchhHHHHHHHHHH
Q 045511 119 SAHQIFNSVV-F---PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 119 ~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
-+..+++.-. . ++..-.+ .+...+..|+.+.+..+++.-+..+ |..-.+.+..++........-.++.+.+.
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll 165 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence 7777775432 1 2222222 2334456677777666665521222 22334444444433322333356666777
Q ss_pred HhccCCCc
Q 045511 192 RNLNENNI 199 (209)
Q Consensus 192 ~~~~~p~~ 199 (209)
+.|..++.
T Consensus 166 ~~ga~~~~ 173 (201)
T 3hra_A 166 ENGADQSI 173 (201)
T ss_dssp HTTCCTTC
T ss_pred HCCCCCCc
Confidence 77777654
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.24 E-value=8.6 Score=24.13 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=43.1
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCchh
Q 045511 139 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNIIL 201 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 201 (209)
++.+.+.|++++|..+...+ ..||...+-.+-. .+.|..++++.-+.++..+| .|....
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~-c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~ 105 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKL-AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQT 105 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTS-CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC-CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHH
Confidence 45677899999999999996 5899998866533 36777777777776776666 443333
No 255
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=79.23 E-value=21 Score=27.88 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCCCC---HHhHHHHHHHhcccc--chhHHHHHHHHHHHhccCCCchhHhHh
Q 045511 134 TWTTIISGLSKCGFHKEAIDMFCGIDVKPN---ANTLVSVLSACSSLG--SRKLGKAIHAHSLRNLNENNIILDNAV 205 (209)
Q Consensus 134 ~~~~li~~~~~~g~~~~a~~~~~~m~~~p~---~~t~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l 205 (209)
..+.+|.-|...|+.++|.+.+++++. |. ......+..+.-+.+ ..+...+++..+.+.|+-+.......+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC-CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 568899999999999999999999943 22 233455555555543 356678888888888876655544443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.27 E-value=11 Score=25.15 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 80 HAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 80 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
.+..++..+++.+.+.+........=-|--++.|.|++++|+++.+.+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344556666666665442222233333444666666666666666655
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.24 E-value=3.7 Score=29.81 Aligned_cols=154 Identities=10% Similarity=-0.034 Sum_probs=76.3
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHH--HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT--FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYV 112 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~ 112 (209)
.+...++.|+.+ +++.+.+.|..|+... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 42 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 113 (285)
T 1wdy_A 42 PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAA 113 (285)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHH
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHH
Confidence 444455566654 4444555565444321 112333334555544 4455555665544321 123455566
Q ss_pred hCCChhhHHHHHHhcCCCcHh------------HHHHHHHHHHhCCChHHHHHHHhhCCCCCCH---HhHHHHHHHhccc
Q 045511 113 TVKDIFSAHQIFNSVVFPDVV------------TWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSSL 177 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~---~t~~~li~~~~~~ 177 (209)
+.|+.+-+..+++.-..++.. .-.+.+...+..|+.+.+..+++..|..++. .-.+.+..++ ..
T Consensus 114 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~ 192 (285)
T 1wdy_A 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LS 192 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH-HC
T ss_pred HhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH-Hc
Confidence 777877777777654332211 0112344445677777777777654333322 2233333333 34
Q ss_pred cchhHHHHHHHHHHHhccCCCc
Q 045511 178 GSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
|+.+...++.+.+.+.|..++.
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSC
T ss_pred cccchHHHHHHHHHHcCCCCCC
Confidence 4444455666667777766553
No 258
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=78.01 E-value=9.2 Score=23.19 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHH
Q 045511 85 GLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 153 (209)
...+++.+.+.|+ .+..-+..+-. .....+.|.++++.++.++..+|..++.++...+....|..
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~ 88 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHH
Confidence 4456677776663 23333333333 35677888888888888888888888888888776655543
No 259
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=77.60 E-value=4.1 Score=27.56 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCc---HhHHHHHHHHHHhCCC--hHHHHHHHhhC---CCCCCHHh---HHHHH
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVTWTTIISGLSKCGF--HKEAIDMFCGI---DVKPNANT---LVSVL 171 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m---~~~p~~~t---~~~li 171 (209)
..+.++.=|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+ ++-+.... |..++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 46778888888899999999999886653 3455556666665433 34566777666 33333222 33333
Q ss_pred HHhcccc-chhHHHHHHHHHHHhccC
Q 045511 172 SACSSLG-SRKLGKAIHAHSLRNLNE 196 (209)
Q Consensus 172 ~~~~~~g-~~~~a~~~~~~~~~~~~~ 196 (209)
..+-... |.-.|..++..+..+-+.
T Consensus 91 ~~ldDl~lDiP~A~~~la~~v~~ai~ 116 (152)
T 2ion_A 91 NEIPDINLDVPHSYSVLERFVEECFQ 116 (152)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HhChHhccCccchHHHHHHHHHHHHH
Confidence 3333222 344566666655554433
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.45 E-value=8.8 Score=25.32 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+...+..+++.+.+.+.......+=-|--|+.+.|++++|.+..+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455555555555442112333334444555556666665555554
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.33 E-value=27 Score=31.69 Aligned_cols=154 Identities=12% Similarity=-0.014 Sum_probs=95.2
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCC-----------------------CHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSY-----------------------NHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p-----------------------~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
..+...|++++|...|++.-. |+.. -..=|..++..+-+.+.++.+.++-....+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455678999999999977532 1111 1123678888888889888888776655554
Q ss_pred ccCcc----HhHHHHHHHHHHhCCChhhHHHHHHhcCCC--cHhHHHHHHHHHHhCCChHHH------------HHHHhh
Q 045511 96 GHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVTWTTIISGLSKCGFHKEA------------IDMFCG 157 (209)
Q Consensus 96 g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a------------~~~~~~ 157 (209)
.-+-+ ...|..+.+++...|++++|...+-.++.+ -.....-++..+|..|..+.- .+++..
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~ 1008 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLER 1008 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHH
Confidence 32222 236899999999999999999998777432 234566677777766665543 333322
Q ss_pred C--CC-CCCH--HhHHHHHHHhccccchhHH-HHHHHHHHHh
Q 045511 158 I--DV-KPNA--NTLVSVLSACSSLGSRKLG-KAIHAHSLRN 193 (209)
Q Consensus 158 m--~~-~p~~--~t~~~li~~~~~~g~~~~a-~~~~~~~~~~ 193 (209)
. .. .|+. .=|..|-.-....|++.+| .-++++..+-
T Consensus 1009 kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1009 KAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 1 11 1111 1245555555667777654 4455555443
No 262
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=76.80 E-value=13 Score=27.06 Aligned_cols=88 Identities=7% Similarity=-0.041 Sum_probs=59.0
Q ss_pred HHHHHHcCCCccchHHHHHHhhhC--CCCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNC--PSSY----NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHF 110 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 110 (209)
-++.+....++++|.+++++.++. ++++ +.......++.-...+.-..+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466788888999999998877642 2332 223334445554555555566666666633 5567777788899
Q ss_pred HHhCCChhhHHHHHHhc
Q 045511 111 YVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~ 127 (209)
+.+-|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 99999999999998554
No 263
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=76.38 E-value=13 Score=28.06 Aligned_cols=107 Identities=9% Similarity=-0.012 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhccCccHh--HHHHHHHHHHhCCChhhHHHHHHhc----CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 85 GLEIHAHVIKYGHLHDIF--IQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 85 a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
...+.+.+.+.|..++.. .-.+.+...+..|..+.+..++..- ...|..-++.|.. -++.|+.+-+.-+++.
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~-A~~~g~~~iv~~Ll~~- 295 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLKKIAELLCKR- 295 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH-HHHTTCHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH-HHHcCCHHHHHHHHHC-
Confidence 345566677888666543 2234566778889999888887643 1233333334433 3567887776666555
Q ss_pred CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCch
Q 045511 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNII 200 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 200 (209)
|..||..+ .+...++.|+.+ +.+.+.++|-.||..
T Consensus 296 GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 296 GASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDFH 330 (337)
T ss_dssp SCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC---
T ss_pred CCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCCC
Confidence 77777655 233444566665 556678888887753
No 264
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=75.56 E-value=4.4 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.034 Sum_probs=27.4
Q ss_pred CChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHH
Q 045511 115 KDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAI 152 (209)
Q Consensus 115 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 152 (209)
++.+.|.++++.++.+...+|..++.++...|+.+.|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46677777777777777777777777777666666553
No 265
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=75.21 E-value=7.4 Score=28.03 Aligned_cols=161 Identities=9% Similarity=-0.078 Sum_probs=88.4
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHH-------HHHHHHHHh--ccccHHHHHHHHHHHHHhc---------cC
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT-------FTQALKACS--LAHAHQKGLEIHAHVIKYG---------HL 98 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~m~~~g---------~~ 98 (209)
.+...++.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+.+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34456677888888888888777776555433 244444432 5677776666665433211 00
Q ss_pred ccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHh----------------HHHHHHHHHHhCCChHHHHHHHhh--CCC
Q 045511 99 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV----------------TWTTIISGLSKCGFHKEAIDMFCG--IDV 160 (209)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~li~~~~~~g~~~~a~~~~~~--m~~ 160 (209)
.....-.+.+...+..|+.+-+.-+++.-..++.. .-.+-+..-+..|+.+-+..+++. -|.
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 167 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 00001234556667788888888887754333221 122344455678888888777773 234
Q ss_pred CCC---HHhHHHHHHHhcccc----chhHHHHHHHHHHHhccCC
Q 045511 161 KPN---ANTLVSVLSACSSLG----SRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 161 ~p~---~~t~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~p 197 (209)
.++ ..-.+.+..++.... ..+...++.+.+.+.|..+
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 433 233445555543221 2333346666677776544
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.10 E-value=19 Score=25.61 Aligned_cols=68 Identities=4% Similarity=-0.014 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHhc--cccHHHHHHHHHHHHHhccCccH-hHHHHHHHHHHhCCChhhHHHHHHhcCC
Q 045511 62 SSYNHYTFTQALKACSL--AHAHQKGLEIHAHVIKYGHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVF 129 (209)
Q Consensus 62 ~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 129 (209)
.+-|..-...+|...-. .+......++|..|...|+.... .-|...-..+...|++.+|.++|..=.+
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45576666666665544 45577899999999999987654 5688888888999999999999976533
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.03 E-value=27 Score=27.78 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCC------CcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVF------PDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
+...+-..|.+.|++++|.+.+.++.. --...+-..|+.+...++|..+.....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455566666666666666666666521 12344555566666666666666665555
No 268
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=74.01 E-value=21 Score=25.32 Aligned_cols=82 Identities=5% Similarity=-0.028 Sum_probs=54.8
Q ss_pred HHHHHHHHHc---CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhccCccHhHHH
Q 045511 34 LNTLLKLLTQ---SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-----HQKGLEIHAHVIKYGHLHDIFIQN 105 (209)
Q Consensus 34 ~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~~~~ 105 (209)
.-.+|+++.| -++++.|+-.+-+|.+.| .|....=..++.+.-..|. +..|...++....-|.+-......
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~La 92 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLA 92 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3346666665 489999999999999999 6666666666777766664 345666677777778665555555
Q ss_pred HHHHHHHhCCC
Q 045511 106 SLLHFYVTVKD 116 (209)
Q Consensus 106 ~ll~~~~~~g~ 116 (209)
..+-.++....
T Consensus 93 qaviyLA~aPK 103 (204)
T 2r9g_A 93 DVVVDLCLSPK 103 (204)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHcCCc
Confidence 44444444433
No 269
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=70.54 E-value=13 Score=21.60 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=38.2
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 55 NKMLNCPSSYNHYTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 55 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
+.|++.|+.++..- ..++..+...+ ..-.+.++.+.+.+.+...+..|--..++.+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566676666544 34455555543 4556777777777766566666666667777666654
No 270
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=69.89 E-value=24 Score=25.45 Aligned_cols=167 Identities=9% Similarity=-0.102 Sum_probs=90.5
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC-------CHHHHHHHHHHHh--ccccHHHHHHHHHHHHHhc---
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-------NHYTFTQALKACS--LAHAHQKGLEIHAHVIKYG--- 96 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~g--- 96 (209)
+|..-.+.|.. .++.|+.+.+..+++...+.+... |..-.+.|..++. +.|+.+.+.-+++.-.+.+
T Consensus 9 ~d~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 9 PRLYDRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp --CCCHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCcccchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 34444555544 567899999999998877665432 3344555555553 3577776666665432211
Q ss_pred --cC-----ccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHh----------------HHHHHHHHHHhCCChHHHHH
Q 045511 97 --HL-----HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV----------------TWTTIISGLSKCGFHKEAID 153 (209)
Q Consensus 97 --~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~li~~~~~~g~~~~a~~ 153 (209)
+. .|. .-.+.+...+..|+.+-++.+++.-..++.. .-.+-+..-+..|+.+-+..
T Consensus 88 ~~i~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYY-KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccC-CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 00 111 2234555666788988888888764332221 12233445567788888888
Q ss_pred HHhh--CCCCCCH---HhHHHHHHHhccc----cchhHHHHHHHHHHHhccCC
Q 045511 154 MFCG--IDVKPNA---NTLVSVLSACSSL----GSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 154 ~~~~--m~~~p~~---~t~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p 197 (209)
+++. -|..++. .-.+.|.-++... +..+...++.+.+.+.|..+
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 219 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence 8873 3344332 2234444444321 12222345666666666544
No 271
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=69.06 E-value=22 Score=23.48 Aligned_cols=62 Identities=8% Similarity=-0.073 Sum_probs=33.3
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 55 NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 55 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
+.+++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34555666555432 233344444444555666776666665555555555555556555543
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.02 E-value=8.5 Score=27.80 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=63.7
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHH
Q 045511 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY---TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHF 110 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~ 110 (209)
..+...++.|+.+-+..++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++.. .-.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 4555667778866555444 445444322 1123444555667764 555666677665532 22355666
Q ss_pred HHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 111 YVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
.+..|+.+-+..+++.-..+ +..-++. +...+..|+.+.+..+++.
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHHHHHh
Confidence 67788888888777764322 2222333 3344567887776666665
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.93 E-value=38 Score=26.15 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=11.3
Q ss_pred HHHHHhccccchhHHHHHHHHH
Q 045511 169 SVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~~ 190 (209)
.++..+ -.+++..|..+++..
T Consensus 193 aVL~yL-~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 193 AVLPYL-LVANVRAANTAYRIF 213 (336)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHHHHH
Confidence 334433 345677777666543
No 274
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=68.80 E-value=28 Score=24.62 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=50.6
Q ss_pred HHHHHHHc---CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhccCccHhHHHHH
Q 045511 36 TLLKLLTQ---SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-----HQKGLEIHAHVIKYGHLHDIFIQNSL 107 (209)
Q Consensus 36 ~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~~~~~l 107 (209)
.+|+++.| -++++.|+-.+-+|.+.|-.|....=..++.+.-..|. +..|...++....-|.+-......-.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqa 88 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQA 88 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 45666665 48999999999999999977776666666777666553 34455556666666654434444333
Q ss_pred HHHHHhC
Q 045511 108 LHFYVTV 114 (209)
Q Consensus 108 l~~~~~~ 114 (209)
+-.++..
T Consensus 89 viyLA~a 95 (201)
T 3bge_A 89 IIYLSVA 95 (201)
T ss_dssp HHHHHHS
T ss_pred HHHHHcC
Confidence 4344433
No 275
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.35 E-value=70 Score=29.06 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=66.5
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--------C-------------
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--------P------------- 130 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~------------- 130 (209)
++..+.+.+..+.+.++.... +.++..-=.+-.+|...|++++|.++|.+... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344444455555554443322 22333322333466778888888888876510 0
Q ss_pred -----cHhHHHHHHHHHHhCCChHHHHHHHhhC----C-CCCCHH--hHHHHHHHhccccchhHHHHHHHHHH
Q 045511 131 -----DVVTWTTIISGLSKCGFHKEAIDMFCGI----D-VKPNAN--TLVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 131 -----~~~~~~~li~~~~~~g~~~~a~~~~~~m----~-~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
-..=|.-++..+-+.|.++.+.++-+.- + -.++.. .|+.+++++...|++++|...+..+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 0112556677777788887776655433 1 122222 47778888888888888887776553
No 276
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=65.66 E-value=34 Score=24.44 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHcC---CCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhccCccHhH
Q 045511 32 HILNTLLKLLTQS---STPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-----HQKGLEIHAHVIKYGHLHDIFI 103 (209)
Q Consensus 32 ~~~~~li~~~~~~---g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~~ 103 (209)
...-.+|+++.|+ ++++.|+-++-+|.+.|-.|....=..++.+.-..|. +..|...++....-|.+-....
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~ 112 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFF 112 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3444567777764 8999999999999999987776666777777766664 3456666777777786655555
Q ss_pred HHHHHHHHHhC
Q 045511 104 QNSLLHFYVTV 114 (209)
Q Consensus 104 ~~~ll~~~~~~ 114 (209)
..-.+-.++..
T Consensus 113 LaqaviyLA~A 123 (213)
T 3ctd_A 113 LSQASLYLAIS 123 (213)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 44444444443
No 277
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=65.24 E-value=0.11 Score=42.55 Aligned_cols=145 Identities=13% Similarity=0.163 Sum_probs=111.1
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
..+..|+.|-.+..+.+++.+|.+-|-+ . -|...|.-++.++.+.|.++.-...+...++. ..++.+=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--A----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--C----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--C----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 3457899999999999988888876522 2 25567899999999999999888877655554 45567778999
Q ss_pred HHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC-----------------------CCCCCHH
Q 045511 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI-----------------------DVKPNAN 165 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-----------------------~~~p~~~ 165 (209)
-+|++.++..+-++.+.. ||..-...+=+-|...|.++.|.-+|..+ ...-|+.
T Consensus 124 ~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 124 FALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp HHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred HHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 999999998886665543 66666667777788888888888777776 1134778
Q ss_pred hHHHHHHHhccccchhHHH
Q 045511 166 TLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 166 t~~~li~~~~~~g~~~~a~ 184 (209)
||-.+-.+|...+++..|.
T Consensus 201 tWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTT
T ss_pred HHHHHHHHHhCchHHHHHH
Confidence 9999999999999887654
No 278
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=64.69 E-value=2.4 Score=30.63 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=10.8
Q ss_pred HHcCCCccchHHHHHHhhhCCC
Q 045511 41 LTQSSTPQNAIPLYNKMLNCPS 62 (209)
Q Consensus 41 ~~~~g~~~~a~~l~~~m~~~g~ 62 (209)
.++.|+.+.+..+++.+.+.|.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 3444555555555555444443
No 279
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=64.68 E-value=5.6 Score=22.14 Aligned_cols=29 Identities=3% Similarity=0.062 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
++|++.|..|++..-.++..||.-.|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555555444344445555555555
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=64.16 E-value=8.1 Score=27.81 Aligned_cols=183 Identities=12% Similarity=-0.014 Sum_probs=91.9
Q ss_pred cchhccCCCcchHhHHHHHHHHhhCCCc-------ccHHHHHHHHH--cCCCccchHHHHHHhhhCC---------CC-C
Q 045511 4 NGLKSLKPTLSFKQLNQIHAQIIKIPQP-------HILNTLLKLLT--QSSTPQNAIPLYNKMLNCP---------SS-Y 64 (209)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~--~~g~~~~a~~l~~~m~~~g---------~~-p 64 (209)
.+.+.|..+.....+..+.+.. ..++. .-++.|..+.. +.|+.+-+..+++.-...+ +. .
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 3445555555444444443333 22332 24456665553 6688777777776543311 11 1
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH----------------HHHHHHHHHhCCChhhHHHHHH---
Q 045511 65 NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI----------------QNSLLHFYVTVKDIFSAHQIFN--- 125 (209)
Q Consensus 65 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----------------~~~ll~~~~~~g~~~~a~~~~~--- 125 (209)
|..-.+ .+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 90 d~~g~t-~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 90 YYRGQT-ALHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp SEESBC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccCCCC-HHHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 112222 333445567765 4555666776666543 3466777788999998888888
Q ss_pred hcC---CCcHhHHHHHHHHHHhCCChHH----HHHHHhhC---CCC----------CCHHhHHHHHHHhccccchhHHHH
Q 045511 126 SVV---FPDVVTWTTIISGLSKCGFHKE----AIDMFCGI---DVK----------PNANTLVSVLSACSSLGSRKLGKA 185 (209)
Q Consensus 126 ~~~---~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m---~~~----------p~~~t~~~li~~~~~~g~~~~a~~ 185 (209)
.-. ..|..-++.|..+........+ ..++.+.+ |.. +|..-.+.+ ...++.|+.+-+..
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~ 243 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGKIGIFQH 243 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCCHHHHHH
Confidence 322 2343444455544433222111 12222222 222 233333444 34446788876666
Q ss_pred HHHHHHHh
Q 045511 186 IHAHSLRN 193 (209)
Q Consensus 186 ~~~~~~~~ 193 (209)
+++.-...
T Consensus 244 Ll~~g~~~ 251 (260)
T 3jxi_A 244 IIRREIAD 251 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHhCCCc
Confidence 65544333
No 281
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=64.09 E-value=28 Score=23.10 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChh
Q 045511 55 NKMLNCPSSYNHYTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIF 118 (209)
Q Consensus 55 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 118 (209)
+.|++.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|--.-|+.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34666777666543 33444454554 55667888888877766666666666666676666543
No 282
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=63.73 E-value=23 Score=23.07 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=30.9
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 57 MLNCPSSYNHYTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 57 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
|++.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|--.-++.+...|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 455666555432 23334444444 4555666666666665555555544455555555443
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.45 E-value=31 Score=23.22 Aligned_cols=75 Identities=5% Similarity=-0.083 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH-hHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHH
Q 045511 62 SSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTII 139 (209)
Q Consensus 62 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 139 (209)
..-|..-....|...-...+ ..++|..|...|+.... .-|...-..+-..|++.+|.++|..=.+.+......|.
T Consensus 64 YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 44566666666665544433 67888888888876553 46777777778888888888888765333333333333
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.35 E-value=7.3 Score=27.34 Aligned_cols=150 Identities=10% Similarity=0.029 Sum_probs=70.9
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHH---HHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHHH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT---FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHFY 111 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~ 111 (209)
.+...++.|+.+-+.. +.+.|..++... -...+...+..|+.+ +++.+.+.|..++.. .-.+.+...
T Consensus 45 ~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 116 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHLA 116 (240)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 4555666677554443 444443332111 122344445556654 445555666555432 122455666
Q ss_pred HhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHh---HHHHHHHhccccchhHHHH
Q 045511 112 VTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT---LVSVLSACSSLGSRKLGKA 185 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t---~~~li~~~~~~g~~~~a~~ 185 (209)
+..|+.+-+..+++.-.. .+..-.+.+..+..+ ++.....+++.+.|..++... -.+.+...+..|+.+-
T Consensus 117 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~--- 192 (240)
T 3eu9_A 117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV--- 192 (240)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHH---
T ss_pred HHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHH---
Confidence 777888877777765322 222333444444433 333334444444433333221 1123344445566653
Q ss_pred HHHHHHHhccCCCc
Q 045511 186 IHAHSLRNLNENNI 199 (209)
Q Consensus 186 ~~~~~~~~~~~p~~ 199 (209)
.+.+.+.|..++.
T Consensus 193 -v~~Ll~~g~~~~~ 205 (240)
T 3eu9_A 193 -ISLLLEAGANVDA 205 (240)
T ss_dssp -HHHHHHHTCCTTC
T ss_pred -HHHHHHcCCCCCC
Confidence 3444556666653
No 285
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=63.28 E-value=21 Score=24.97 Aligned_cols=150 Identities=11% Similarity=-0.015 Sum_probs=79.4
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHHHHhccCc-----cH--hHHHHH
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNH---YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH-----DI--FIQNSL 107 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~--~~~~~l 107 (209)
+...++.|+.+.+..+++. .|..++. .-++ .+...+..|+.+.+..++ +.|..+ +. ..-.+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALYDNLEAAMVLM----EAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HHCGGGGGCCCCSTTTTTCCH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHH----HcCchhccccccccCCCCcCH
Confidence 4445566665555544432 1433332 2223 334445567765444444 444222 11 122345
Q ss_pred HHHHHhCCChhhHHHHHHhcCCCcHh---------------HHHHHHHHHHhCCChHHHHHHHhhCCCCCCHH---hHHH
Q 045511 108 LHFYVTVKDIFSAHQIFNSVVFPDVV---------------TWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVS 169 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~---t~~~ 169 (209)
+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+..+++. |..++.. -.+
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t- 156 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNT- 156 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCC-
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCC-
Confidence 56666778888777777664332211 112334444567777776666654 4444332 223
Q ss_pred HHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 170 VLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
.+...+..|+.+.+.++++.+.+.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3445557788888888888888887655
No 286
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.28 E-value=17 Score=27.09 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=76.3
Q ss_pred HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC--C----cHhHHHHHHHHHHhCC
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P----DVVTWTTIISGLSKCG 146 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g 146 (209)
+....+.|+++.+.+....-.+.. +-|...=..|+..+|-.|+++.|.+=++...+ | ....|-.+|.+=...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R- 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR- 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH-
Confidence 345677899999998888887775 67888889999999999999999887776632 3 344555555542211
Q ss_pred ChHHHHHHHhhCCCCC-----CHHhHHHHHHHhc--cccchhHHHHHHHHHHHh
Q 045511 147 FHKEAIDMFCGIDVKP-----NANTLVSVLSACS--SLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 147 ~~~~a~~~~~~m~~~p-----~~~t~~~li~~~~--~~g~~~~a~~~~~~~~~~ 193 (209)
.++|..= ..| ...-...++++.. ..|+.++|.++-....+.
T Consensus 82 -----~~vfaG~-~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 -----KDFAQGA-ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHTTSC-CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHcCC-CCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2444332 122 2234556666654 458999999988877554
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.92 E-value=18 Score=26.65 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=11.1
Q ss_pred HHHHHHHhCCChhhHHHHHHhc
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
+.+...+..|+.+-+..+++.-
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTS
T ss_pred CHHHHHHHcCCHHHHHHHHhCC
Confidence 4444455555555555555443
No 288
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.08 E-value=57 Score=25.76 Aligned_cols=158 Identities=8% Similarity=-0.046 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhC-CCCC---CHHHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCc-----cH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNC-PSSY---NHYTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLH-----DI 101 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p---~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~-----~~ 101 (209)
.+...|...|.+.|+.++..+++...+.- +..| .......++..+.... ..+.-.++..+..+....- ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888888999999988888877542 1122 2344667777776653 3333334433333322111 11
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHhcC----CCc-----HhHHHHHHHHHHhCCChHHHHHHHhhC-----CCCCCHHhH
Q 045511 102 FIQNSLLHFYVTVKDIFSAHQIFNSVV----FPD-----VVTWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTL 167 (209)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~p~~~t~ 167 (209)
.+=..|...|...|++.+|.+++.++. ..| ...|-.-+..|...+++.++...+..- .+.|+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 233478899999999999988887772 222 345666778889999999998888666 332333332
Q ss_pred HHHHHH-----hc-cccchhHHHHHHHHH
Q 045511 168 VSVLSA-----CS-SLGSRKLGKAIHAHS 190 (209)
Q Consensus 168 ~~li~~-----~~-~~g~~~~a~~~~~~~ 190 (209)
. .|+. +. ..+++..|...|-+.
T Consensus 180 a-~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 G-ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp H-HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred H-HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2 2222 23 567888877766554
No 289
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=61.67 E-value=27 Score=23.20 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=31.0
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 56 KMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 56 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
.+++.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|-=.-|+.+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 355566555433 2233444444444556666666666665555555554555555555543
No 290
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=60.75 E-value=15 Score=26.22 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHc--CCCccchHHHHHHhhh
Q 045511 32 HILNTLLKLLTQ--SSTPQNAIPLYNKMLN 59 (209)
Q Consensus 32 ~~~~~li~~~~~--~g~~~~a~~l~~~m~~ 59 (209)
.-++.|..++.. .|+.+-+..+++.-..
T Consensus 42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp TTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 444555544432 2666666666655444
No 291
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.69 E-value=38 Score=23.24 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=12.7
Q ss_pred HHHHHHhCCChHHHHHHHhhC
Q 045511 138 IISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m 158 (209)
+-.+|.+.|++++|+.++..+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 445566666666666666554
No 292
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=60.11 E-value=7.4 Score=27.33 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=79.7
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH---YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQ 104 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~ 104 (209)
+..-++.|.. .++.|+.+ +++.+.+.|..++. .-.+. +...+..|+.+ +++.+.+.|..++.. .-
T Consensus 37 ~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g 106 (231)
T 3aji_A 37 DQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWSP-LHIAASAGXDE----IVKALLVKGAHVNAVNQNG 106 (231)
T ss_dssp CTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTS
T ss_pred CCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCCH-HHHHHHcCHHH----HHHHHHHcCCCCCCCCCCC
Confidence 3444444444 45556644 44444555654443 22233 33344556654 555666667655432 12
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCH---HhHHHHHHHhcccc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLG 178 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~---~t~~~li~~~~~~g 178 (209)
.+.+...++.|+.+-+..+++.-..+ +..-. +.+...+..|+.+.+..+++. |..++. .-.+. +...++.|
T Consensus 107 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~-L~~A~~~~ 183 (231)
T 3aji_A 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTP-LHLACDEE 183 (231)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCH-HHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-cHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCCH-HHHHHHCC
Confidence 34566667788888888887754332 22222 234444566777776666654 444433 22233 33344556
Q ss_pred chhHHHHHHHHHHHhccCCCc
Q 045511 179 SRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~p~~ 199 (209)
+.+ +.+.+.+.|..++.
T Consensus 184 ~~~----~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 184 RVE----EAKFLVTQGASIYI 200 (231)
T ss_dssp CHH----HHHHHHHTTCCSCC
T ss_pred CHH----HHHHHHHCCCCCCC
Confidence 655 44556677777653
No 293
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=59.79 E-value=24 Score=22.76 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=22.3
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
+..+...+..-.|.++++.+++.+...+..|.-..|+.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444445556666666655554445555555555554444
No 294
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=59.41 E-value=36 Score=22.68 Aligned_cols=83 Identities=8% Similarity=0.001 Sum_probs=54.0
Q ss_pred chHhHHHHHHHHhh----CCCcccHHHHHHHHHcCCCc---cchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHH
Q 045511 14 SFKQLNQIHAQIIK----IPQPHILNTLLKLLTQSSTP---QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 14 a~~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 86 (209)
..+.+..+++.... .|+..+-=.+-.+++++.+. .++..+++.+.+.+-.-.....--+--++.+.|+++.|.
T Consensus 18 ~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp CHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555432 25554444455566666544 468888888887543223344555666788999999999
Q ss_pred HHHHHHHHhc
Q 045511 87 EIHAHVIKYG 96 (209)
Q Consensus 87 ~~~~~m~~~g 96 (209)
+..+.+++..
T Consensus 98 ~y~d~lL~~e 107 (144)
T 1y8m_A 98 RYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9999999854
No 295
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=58.94 E-value=17 Score=23.89 Aligned_cols=111 Identities=8% Similarity=-0.064 Sum_probs=51.9
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCHHHH--HHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhC
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTF--TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTV 114 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~ 114 (209)
...++.|+.+.+..+++. .+..++.... .+.+...+..|+. ++++.+.+.|..++... -.+.+...+..
T Consensus 13 ~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 344556666555555432 2222221111 1233334455664 34455555665554332 22445555667
Q ss_pred CChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 115 KDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 115 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
|+.+-+.-+++.-..+ |..-++. +...+..|+.+-+..+++.
T Consensus 86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 86 GHYEVAELLVKHGAVVNVADLWKFTP-LHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHHc
Confidence 7777666666653222 2222222 3334456666655555544
No 296
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=58.69 E-value=15 Score=24.11 Aligned_cols=118 Identities=11% Similarity=-0.010 Sum_probs=63.9
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCC
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCG 146 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 146 (209)
.+...++.|+.+.+..+++. .+..++... -.+.+...+..|+.+-+..+++.-..+ |..-++ .+..-+..|
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~ 86 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLV-PLHNACSYG 86 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCC-HHHHHHHcC
Confidence 34444677887766665532 222222221 125666777889988888888764332 222223 334445678
Q ss_pred ChHHHHHHHhhCCCCCCH---HhHHHHHHHhccccchhHHHHHHHHHHHhccCCCc
Q 045511 147 FHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 147 ~~~~a~~~~~~m~~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
+.+-+..+++. |..++. .-.+.+. ..+..|+.+ +.+.+.+.|..|+.
T Consensus 87 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 87 HYEVAELLVKH-GAVVNVADLWKFTPLH-EAAAKGKYE----ICKLLLQHGADPTK 136 (165)
T ss_dssp CHHHHHHHHHT-TCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred cHHHHHHHHhC-CCCCCCcCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCcc
Confidence 88776666655 444433 2233333 334556665 44445566766654
No 297
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=58.51 E-value=23 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=19.9
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH 80 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 80 (209)
+..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333444444455555555555444444444444444444443
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.52 E-value=27 Score=23.08 Aligned_cols=61 Identities=13% Similarity=0.021 Sum_probs=32.4
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCCh
Q 045511 55 NKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDI 117 (209)
Q Consensus 55 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 117 (209)
+.+++.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|-=.-|+.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34555666655432 22333333334 456777777776666555555544445555555543
No 299
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=57.35 E-value=61 Score=24.58 Aligned_cols=142 Identities=6% Similarity=0.026 Sum_probs=84.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhC-C----CCCCHHHHHHHH---HHHhccccHHHHHHHHHHHHHhccCccHhH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNC-P----SSYNHYTFTQAL---KACSLAHAHQKGLEIHAHVIKYGHLHDIFI 103 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g----~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 103 (209)
.-.|.+...+.-.-+-++|...|..+... + ..|+.......+ ..+.+.-+ .++++.+.+.|+.|...+
T Consensus 150 QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~ 225 (331)
T 3qye_A 150 QGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYA 225 (331)
T ss_dssp TTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTS
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHH
Confidence 44455555554444667888888887643 2 345543332222 22222222 366777888899999888
Q ss_pred HHHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHH--HHH----HHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhc
Q 045511 104 QNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWT--TII----SGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 175 (209)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~--~li----~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~ 175 (209)
+.=++..+++.=.++.+.+++|.+- .+....+- +++ ..+....+.++...+++..--..+......+|+-..
T Consensus 226 ~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~ 305 (331)
T 3qye_A 226 APWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVF 305 (331)
T ss_dssp HHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 8888888888878999999999872 22322221 122 222334578888888887411123445555564444
Q ss_pred cc
Q 045511 176 SL 177 (209)
Q Consensus 176 ~~ 177 (209)
..
T Consensus 306 ~l 307 (331)
T 3qye_A 306 EM 307 (331)
T ss_dssp HC
T ss_pred hC
Confidence 33
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.77 E-value=37 Score=21.97 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=40.4
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc--cHHHHHHHHHHHHHhccC
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH--AHQKGLEIHAHVIKYGHL 98 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~ 98 (209)
..+.++.-|...|+.++|..-++++....+. ...+...+..++-+.+ ..+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3466888888889999999998888632221 2234455555555543 235566666666665543
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.25 E-value=19 Score=26.50 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=80.6
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSL 107 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~l 107 (209)
|..-++.| ...++.|+.+-+..+ .+.|..++...-.+.+...+..|+.+. ++.+.+.|..++.. .-.+.
T Consensus 28 d~~g~t~L-~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~ 98 (285)
T 3kea_A 28 DVHGHSAS-YYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTA 98 (285)
T ss_dssp CTTSCCHH-HHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCHH-HHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcH
Confidence 33444444 445556776554444 444544443322345555567777654 44555667655532 12345
Q ss_pred HHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCC-CH-HhHHHHHHHhccccchhH
Q 045511 108 LHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP-NA-NTLVSVLSACSSLGSRKL 182 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p-~~-~t~~~li~~~~~~g~~~~ 182 (209)
+...+..|+.+-+.-+++.-..+ +..-+.+.+...+..|+.+-+..++..- ..+ +. .-.+. +...+..|+.+-
T Consensus 99 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~g~t~-L~~A~~~g~~~~ 176 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAILLSC-IHITIKNGHVDM 176 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS-CTTCCCSTHHHH-HHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CccccccCCccH-HHHHHHcChHHH
Confidence 56667889988888888764322 2223335555666788887776666653 222 22 23333 444446677765
Q ss_pred HHHHHH
Q 045511 183 GKAIHA 188 (209)
Q Consensus 183 a~~~~~ 188 (209)
+..+++
T Consensus 177 v~~Ll~ 182 (285)
T 3kea_A 177 MILLLD 182 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 302
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.93 E-value=54 Score=24.47 Aligned_cols=113 Identities=10% Similarity=-0.023 Sum_probs=62.4
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cCccHhHHHHHHHHHHhCCC
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG--HLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~ 116 (209)
....+.|+++++++....-.+.. +-|...=..++..+|-.|+++.|..=++...+-. ..|...+|-.+|.+=..+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R-- 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-- 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--
Confidence 34566777777777776666654 3466666677777888888888877777666543 222334555555432221
Q ss_pred hhhHHHHHHhcCCC-----cHhHHHHHHHHHHh--CCChHHHHHHHhhC
Q 045511 117 IFSAHQIFNSVVFP-----DVVTWTTIISGLSK--CGFHKEAIDMFCGI 158 (209)
Q Consensus 117 ~~~a~~~~~~~~~~-----~~~~~~~li~~~~~--~g~~~~a~~~~~~m 158 (209)
.++|..=..| .......++.++.. .|+.++|.++-...
T Consensus 82 ----~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 82 ----KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp ----HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 1222211111 22234455555443 47777766555444
No 303
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.38 E-value=32 Score=22.36 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHcCC-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 36 TLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 36 ~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
.++..+...+ ..-.|.++++.+.+.+...+..|.-.-|+.+...|-+
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4555666666 6788999999999988777888877777777777654
No 304
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=54.91 E-value=34 Score=20.89 Aligned_cols=66 Identities=6% Similarity=0.056 Sum_probs=42.4
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHH
Q 045511 52 PLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 123 (209)
Q Consensus 52 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 123 (209)
.+++.+.+.|+ .+..-...+-. .......+.+.++++.+.++| ...|..++.++...|+..-|..+
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 46666777765 34333333332 112256788888888888776 67888888888777776666544
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.57 E-value=46 Score=22.38 Aligned_cols=55 Identities=5% Similarity=-0.080 Sum_probs=45.2
Q ss_pred ccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH
Q 045511 47 PQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101 (209)
Q Consensus 47 ~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 101 (209)
.+++.++|..|..+|+-- -..-|...-..+...|++.+|.++|+.=.+++-.|-.
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466999999999998644 4466888889999999999999999888877766643
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.94 E-value=48 Score=22.36 Aligned_cols=58 Identities=10% Similarity=-0.038 Sum_probs=26.4
Q ss_pred hhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh--ccCccHhHHHHHHHHHHhCCC
Q 045511 58 LNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY--GHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 58 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~ 116 (209)
++.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|-=.-|+.+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445544432 233344444444444555555555555 444444443333444444443
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.77 E-value=35 Score=22.48 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=44.2
Q ss_pred hHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 15 FKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 15 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
...+.+..+..+.+++. .=-.++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 33444444444443443 22334555556677788999999999888777888877777777777654
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.60 E-value=31 Score=24.09 Aligned_cols=152 Identities=9% Similarity=0.007 Sum_probs=90.2
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHHH--HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT--FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYV 112 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~ 112 (209)
.+...++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34556777999888888888777776555432 223444555667764 5556666776655432 235566677
Q ss_pred hCCChhhHHHHHHhcC----C---CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCH----HhHHHHHHHhccccchh
Q 045511 113 TVKDIFSAHQIFNSVV----F---PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA----NTLVSVLSACSSLGSRK 181 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~----~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~----~t~~~li~~~~~~g~~~ 181 (209)
..|+.+-+..+++... . .+..-.+. +...+..|+.+.+..+++. |..++. .-.+. +...++.|+.+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~-L~~A~~~~~~~ 164 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLER-GADIDAVDIKSGRSP-LIHAVENNSLS 164 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCH-HHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcH-HHHHHHcCCHH
Confidence 8899998888887753 1 22222233 3344566777776666655 444433 22333 34444667765
Q ss_pred HHHHHHHHHHHhccCCCc
Q 045511 182 LGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 182 ~a~~~~~~~~~~~~~p~~ 199 (209)
+.+.+.+.|..++.
T Consensus 165 ----~v~~Ll~~g~~~~~ 178 (241)
T 1k1a_A 165 ----MVQLLLQHGANVNA 178 (241)
T ss_dssp ----HHHHHHHTTCCTTC
T ss_pred ----HHHHHHHcCCCCCC
Confidence 44455566776654
No 309
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=52.16 E-value=54 Score=22.45 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=62.9
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCC-CCCCH-------HHHHHHHHHHhccccHHHHHHHHHHHHHhc--cC--cc
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCP-SSYNH-------YTFTQALKACSLAHAHQKGLEIHAHVIKYG--HL--HD 100 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~--~~ 100 (209)
.+-.-+..+...|.++.|.-+.+.+.... -.|+. .++..+-.++-..|++..|...|+..++.. +. ++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445666777788888877766653321 22332 356666777888899999999988854332 11 10
Q ss_pred --------------------HhHHHHHHHHHHhCCChhhHHHHHHhcCC
Q 045511 101 --------------------IFIQNSLLHFYVTVKDIFSAHQIFNSVVF 129 (209)
Q Consensus 101 --------------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 129 (209)
...-=-+-.+|.+.++.++|..+++.++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11212366789999999999999999864
No 310
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=51.81 E-value=37 Score=22.20 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=52.9
Q ss_pred hccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHH
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEA 151 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 151 (209)
+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.-+++.-.. +|..-++. +...+..|+.+-+
T Consensus 44 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v 118 (167)
T 3v31_A 44 AAHGQIA----VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP-LLYAVHGNHVKCV 118 (167)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH-HHHHHHTTCHHHH
T ss_pred HHCCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCH-HHHHHHcCCHHHH
Confidence 4445543 3444445555444221 12345555666777766666654322 22222223 3333456777666
Q ss_pred HHHHhhCCCCCCHHh--HHHHHHHhccccchhHHHHHHHHHHH
Q 045511 152 IDMFCGIDVKPNANT--LVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 152 ~~~~~~m~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
..+++. |..|+... -.+.+...++.|+.+-+..+++...+
T Consensus 119 ~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 119 KMLLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 555554 44433221 11224444466777766666655443
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.64 E-value=54 Score=22.34 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH-hHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 64 YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 64 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
-|..-...+|...-..++ ..++|..|.+.||.... .-|...-..+-..|++.+|.++|..-
T Consensus 61 nD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp TCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355544555543333322 45566666666655443 34555566666666666666666544
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=51.53 E-value=57 Score=22.53 Aligned_cols=19 Identities=11% Similarity=-0.137 Sum_probs=10.0
Q ss_pred HHHHHcCCCccchHHHHHH
Q 045511 38 LKLLTQSSTPQNAIPLYNK 56 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~ 56 (209)
+...++.|+.+.+..+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444555565555555544
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.52 E-value=47 Score=22.21 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc--cHHHHHHHHHHHHHhccC
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH--AHQKGLEIHAHVIKYGHL 98 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~ 98 (209)
..+.++.-|...|+.++|..-++++..-.+. ...+...+..++-+.+ ..+.+..++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888899999999999888642221 2244455555555532 244566666666665533
No 314
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=50.52 E-value=1.4e+02 Score=26.87 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=68.9
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cCcc-------HhHHHHH
Q 045511 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG-HLHD-------IFIQNSL 107 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~-------~~~~~~l 107 (209)
.+++++...|...-..-+.+.+....+.+.... ..+..+.....--.+..+.+..+.+.. +..+ ..++.+|
T Consensus 344 ~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~-~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gsl 422 (1056)
T 1lsh_A 344 WILDAVPAMATSEALLFLKRTLASEQLTSAEAT-QIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSL 422 (1056)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHH-HHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHH-HHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHH
Confidence 467777777776544444444444334333221 222222211112223334444443322 2222 3467788
Q ss_pred HHHHHhCCC---hhhHHHHHHhc----CCCcHhHHHHHHHHHHhCCChHHHHHHHhhC--CCC---CC--HHhHHHHHHH
Q 045511 108 LHFYVTVKD---IFSAHQIFNSV----VFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVK---PN--ANTLVSVLSA 173 (209)
Q Consensus 108 l~~~~~~g~---~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~---p~--~~t~~~li~~ 173 (209)
++-+|.... .+....+.+.+ .+.+..---..|+++++.|.... +..+... |.. .+ ...-...|.+
T Consensus 423 V~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~-l~~l~~~l~~~~~~~~~~~~rvr~aAi~A 501 (1056)
T 1lsh_A 423 VFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNS-IKKIQRFLPGQGKSLDEYSTRVQAEAIMA 501 (1056)
T ss_dssp HHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGG-HHHHHTTSTTSSSCCCCSCHHHHHHHHHT
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhH-HHHHHHhhcCccccccccchHHHHHHHHH
Confidence 887776532 11122222222 23344445567788888887653 3344443 431 11 1233345555
Q ss_pred hccccch--hHHHHHHHHH
Q 045511 174 CSSLGSR--KLGKAIHAHS 190 (209)
Q Consensus 174 ~~~~g~~--~~a~~~~~~~ 190 (209)
+.+..+. +.+..++-.+
T Consensus 502 Lr~~~~~~p~~v~~il~~i 520 (1056)
T 1lsh_A 502 LRNIAKRDPRKVQEIVLPI 520 (1056)
T ss_dssp TTTGGGTCHHHHHHHHHHH
T ss_pred HHHhhhhchHHHHHHHHHH
Confidence 5544432 3455554443
No 315
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.41 E-value=81 Score=23.98 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=11.6
Q ss_pred cccchhHHHHHHHHHH
Q 045511 176 SLGSRKLGKAIHAHSL 191 (209)
Q Consensus 176 ~~g~~~~a~~~~~~~~ 191 (209)
-.|+...|..+++...
T Consensus 200 ~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 200 FISNISFAHESKDIFL 215 (312)
T ss_dssp HTTBHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4678888888887543
No 316
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=49.52 E-value=56 Score=24.88 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.2
Q ss_pred HHHHHHhhCCCcccHHHHHH
Q 045511 20 QIHAQIIKIPQPHILNTLLK 39 (209)
Q Consensus 20 ~~~~~~~~~p~~~~~~~li~ 39 (209)
++++..+..|+-..||+++.
T Consensus 84 ~V~~~VG~EPSG~~FNSi~~ 103 (310)
T 1u60_A 84 AVQDKIGADPTGLPFNSVIA 103 (310)
T ss_dssp HHHHHTCSCCCSSCTTCHHH
T ss_pred HHHHHhCCCCCCCCCcchhh
Confidence 45555566677777777664
No 317
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.83 E-value=1e+02 Score=24.61 Aligned_cols=146 Identities=9% Similarity=0.085 Sum_probs=95.7
Q ss_pred CCccchHHHHHHhhh-----CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH-hccCccHhHHHHHHH----HHHhC
Q 045511 45 STPQNAIPLYNKMLN-----CPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK-YGHLHDIFIQNSLLH----FYVTV 114 (209)
Q Consensus 45 g~~~~a~~l~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~----~~~~~ 114 (209)
|+++.|.+.+-.+.+ .+..........++..|...++++...+.+..+.+ +|..+. ....+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 567777777655543 33556678888999999999999988887776653 343332 2334443 33333
Q ss_pred CChh--hHHHHHHhcCC----C------cHhHHHHHHHHHHhCCChHHHHHHHhhC-----CCCCC---HHhHHHHHHHh
Q 045511 115 KDIF--SAHQIFNSVVF----P------DVVTWTTIISGLSKCGFHKEAIDMFCGI-----DVKPN---ANTLVSVLSAC 174 (209)
Q Consensus 115 g~~~--~a~~~~~~~~~----~------~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~p~---~~t~~~li~~~ 174 (209)
+..+ .-..+.+.... . .......|...|-..|++.+|..++.++ |..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333 22333333311 0 1223456778899999999999999998 33222 24677788889
Q ss_pred ccccchhHHHHHHHHHHH
Q 045511 175 SSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~ 192 (209)
...+|+.+|..++.....
T Consensus 188 l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999887643
No 318
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=48.57 E-value=6.6 Score=21.81 Aligned_cols=25 Identities=0% Similarity=-0.069 Sum_probs=19.2
Q ss_pred cCCCccchHHHHHHhhhCC-CCCCHH
Q 045511 43 QSSTPQNAIPLYNKMLNCP-SSYNHY 67 (209)
Q Consensus 43 ~~g~~~~a~~l~~~m~~~g-~~p~~~ 67 (209)
..-+++.|...|.+++..| ++|+.+
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578999999999998766 665543
No 319
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=48.31 E-value=29 Score=22.88 Aligned_cols=145 Identities=15% Similarity=0.052 Sum_probs=70.9
Q ss_pred HHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHHHHhCCC
Q 045511 39 KLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHFYVTVKD 116 (209)
Q Consensus 39 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~ 116 (209)
...++.|+.+.+..+++.-...--.+|..-++.+.. .+..|+.+ +++.+.+.|..++.. .-.+.+...+..|+
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIE----TVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHH-HHHTTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 344556666655555543211000122222333333 34556654 444555566554432 22345566677788
Q ss_pred hhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHH---hHHHHHHHhccccchhHHHHHHHHH
Q 045511 117 IFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLSACSSLGSRKLGKAIHAHS 190 (209)
Q Consensus 117 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~~ 190 (209)
.+-+..+++.-..+ |..-.+. +...+..|+.+-+..+++. |..++.. -.+ .+...+..|+.+-+..+++..
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t-~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTP-LLYAVRGNHVKCVEALLAR-GADLTTEADSGYT-PMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHc-CCCccccCCCCCC-HHHHHHHhCcHHHHHHHHHHH
Confidence 88777777654322 2222233 3334466777776666654 4444332 222 234444566776666555544
Q ss_pred H
Q 045511 191 L 191 (209)
Q Consensus 191 ~ 191 (209)
.
T Consensus 159 ~ 159 (172)
T 3v30_A 159 L 159 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 320
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=48.23 E-value=56 Score=22.41 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=23.0
Q ss_pred chHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCc
Q 045511 49 NAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLH 99 (209)
Q Consensus 49 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 99 (209)
.+..++..+.+.|+.-|..--..++....+.|.+ ....+-.++.+.|+.+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH
Confidence 3445555555555544443334444444333221 2334455566666543
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.15 E-value=34 Score=22.69 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 36 TLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
.++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 45566666777889999999999887777777777777777777654
No 322
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=47.89 E-value=48 Score=25.31 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCC-----CCCCHHH---HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHH
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCP-----SSYNHYT---FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 106 (209)
|.+...+.-.-+-++|...|..+...- +.++... +-..+..+.+.-+ .++++.+.+.|+.|...++.=
T Consensus 158 ~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----P~L~~hL~~~~i~~~~~~~~W 233 (334)
T 2qq8_A 158 SFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENL----PKLFAHFKKNNLTPDIYLIDW 233 (334)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHcCCCccchHHHH
Confidence 333333333334567888877765431 2233322 2223333333333 356777788899999998888
Q ss_pred HHHHHHhCCChhhHHHHHHhcC-CCcHhHHH---HHHHHH---HhCCChHHHHHHHhhC
Q 045511 107 LLHFYVTVKDIFSAHQIFNSVV-FPDVVTWT---TIISGL---SKCGFHKEAIDMFCGI 158 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~---~li~~~---~~~g~~~~a~~~~~~m 158 (209)
++..+++.=.++.+.+++|.+- +.+...+- +++..+ .-..+.++...+++.+
T Consensus 234 ~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 234 IFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 8888888888899999998872 22222221 112111 2234677888888876
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.47 E-value=25 Score=27.05 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCc---HhHHHHHHHHHHhCC-ChHHHHHHHhhC---CCCCCHH---hHHHHHH
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVTWTTIISGLSKCG-FHKEAIDMFCGI---DVKPNAN---TLVSVLS 172 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g-~~~~a~~~~~~m---~~~p~~~---t~~~li~ 172 (209)
-.+.++.=|...|+.++|.+.++++..|. ..+..++..++-+.. ..+.+..++..+ |+-+... .|..++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 35678888888899999999999887664 223333333333322 123345555555 2222221 1333333
Q ss_pred Hhcccc-chhHHHHHHHHHHHhccCC
Q 045511 173 ACSSLG-SRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 173 ~~~~~g-~~~~a~~~~~~~~~~~~~p 197 (209)
.+-... |.-.|...+..+...-+.-
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~~~i~~ 118 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVTPILQE 118 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHGGGGST
T ss_pred hChHhhcCccchHHHHHHHHHHHHHC
Confidence 332222 4445556665555544433
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.47 E-value=23 Score=26.92 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=16.9
Q ss_pred HHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 89 HAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 89 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
.+.+.+.|..++...-.+.+...+..|+.+-+..+++.
T Consensus 69 v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 69 AKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 33444444433332223334444455555555555544
No 325
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=46.40 E-value=50 Score=20.41 Aligned_cols=60 Identities=13% Similarity=-0.037 Sum_probs=39.7
Q ss_pred cchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-H-HHHHHHHHHH-HHhccCccHhHHHHH
Q 045511 48 QNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-H-QKGLEIHAHV-IKYGHLHDIFIQNSL 107 (209)
Q Consensus 48 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~-~~a~~~~~~m-~~~g~~~~~~~~~~l 107 (209)
-.+.++.++...-|+.|+..++..++..|...+- . +-+.+++..- -..|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 4577788888888999998888999888877764 1 2234443332 244667776666543
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.20 E-value=79 Score=22.77 Aligned_cols=112 Identities=5% Similarity=0.062 Sum_probs=74.0
Q ss_pred CCCc-ccHHHHHHHHHcC---C-C-ccchHHHHHHhhhC-----CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc
Q 045511 28 IPQP-HILNTLLKLLTQS---S-T-PQNAIPLYNKMLNC-----PSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYG 96 (209)
Q Consensus 28 ~p~~-~~~~~li~~~~~~---g-~-~~~a~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 96 (209)
..|+ ..|-..|.-.-.+ | . -..-..++++..+. ...-|..-...+|...-.. +...++|..|...|
T Consensus 68 ~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~---~~p~~if~~L~~~~ 144 (223)
T 4aez_C 68 LDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI---DEPVELFSFLAHHH 144 (223)
T ss_dssp SSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC---SCHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc---CCHHHHHHHHHHCC
Confidence 3455 6676666655543 3 2 23456677666542 2456777777777665433 46779999999999
Q ss_pred cCccH-hHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHH
Q 045511 97 HLHDI-FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGL 142 (209)
Q Consensus 97 ~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 142 (209)
|.... .-|...-..+-..|++.+|.++|..=.+........|...|
T Consensus 145 IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 145 IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 87664 57888888999999999999999876443333344444433
No 327
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=45.59 E-value=31 Score=22.12 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=25.7
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 045511 53 LYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 53 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 94 (209)
+|+.+.+..+.|++..--.-|..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466666666655554444444555666777777777766654
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.36 E-value=42 Score=22.07 Aligned_cols=62 Identities=11% Similarity=-0.033 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 19 NQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 19 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
.+..+..+.+++.. =..++..+.+.+ .-.|.++++.+.+.+...+..|.-.-|..+...|-+
T Consensus 7 ~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 33444444444431 123344444555 678999999999988777887777777777776654
No 329
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.36 E-value=79 Score=22.39 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=59.8
Q ss_pred HhHHHHHHHHhhCC----Cc---ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHH
Q 045511 16 KQLNQIHAQIIKIP----QP---HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 16 ~~~~~~~~~~~~~p----~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
..+.+..+.+...+ |+ ..|-.++..| ..+...++.++|..|...|+-- -..-|...-..+...|++..|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555553332 22 5555555544 2334568999999999988643 44668888999999999999999
Q ss_pred HHHHHHHhccCccH
Q 045511 88 IHAHVIKYGHLHDI 101 (209)
Q Consensus 88 ~~~~m~~~g~~~~~ 101 (209)
+|+.=.+++-.|-.
T Consensus 137 Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 137 LLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHTTCBSHH
T ss_pred HHHHHHHcCCccHH
Confidence 99988887766643
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.28 E-value=29 Score=26.34 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=43.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHh-------------------HHHHHHHHHHhCC--ChhhHHHHHHhcCCC
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIF-------------------IQNSLLHFYVTVK--DIFSAHQIFNSVVFP 130 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-------------------~~~~ll~~~~~~g--~~~~a~~~~~~~~~~ 130 (209)
.+...+..|+.+.+..+++.-.+.|..++.. .-.+.+...+..| +.+-+..+++.-..+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence 3444456677666666666554445444331 0124455556666 666666666553222
Q ss_pred ---cHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 131 ---DVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 131 ---~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
|..-++. +...+..|+.+-+..+++.
T Consensus 167 ~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 167 TAKDKADETP-LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp TCCCTTSCCH-HHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCCCCH-HHHHHHcCCHHHHHHHHhc
Confidence 2222223 3333456777666666654
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.26 E-value=40 Score=22.37 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHHHHHHcCC-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHH
Q 045511 36 TLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQ 83 (209)
Q Consensus 36 ~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 83 (209)
.++..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3455555665 67789999999999887778888777777777777543
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.48 E-value=44 Score=19.22 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHHHcCC-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccH
Q 045511 35 NTLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 35 ~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
-.++..+.+.+ ..-.+.++++.+.+.+...+..|....|..+...|-+
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 44566666654 5678889999998887667778888888777776654
No 333
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=44.12 E-value=10 Score=25.30 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhccccHHHH
Q 045511 66 HYTFTQALKACSLAHAHQKG 85 (209)
Q Consensus 66 ~~t~~~ll~~~~~~~~~~~a 85 (209)
..++.-++....+.|-++..
T Consensus 77 ~~s~rd~~r~a~~~GlI~d~ 96 (146)
T 1jog_A 77 AYGFKDILREALRFGLIGDM 96 (146)
T ss_dssp SCCHHHHHHHHHHTTSCSCH
T ss_pred CCCHHHHHHHHHHcCCCCcH
Confidence 44555555555555554433
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.97 E-value=1.1e+02 Score=23.47 Aligned_cols=140 Identities=10% Similarity=0.081 Sum_probs=71.8
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHhccCccHhH---HHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAH-AHQKGLEIHAHVIKYGHLHDIFI---QNSLL 108 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~---~~~ll 108 (209)
-.+.++.-|...|+.++|..-++++..-...| ......+..++-+.. ..+.+-.++..+.+.|+-+.... +..++
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~ 91 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL 91 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35668888888899999888888885422211 233334444443322 23455566666665553332222 22222
Q ss_pred HHHHhCC-ChhhHHHHHHhcC-------------------C------CcHhHHHHHHHHHHhCCChHHHHHHHhhC----
Q 045511 109 HFYVTVK-DIFSAHQIFNSVV-------------------F------PDVVTWTTIISGLSKCGFHKEAIDMFCGI---- 158 (209)
Q Consensus 109 ~~~~~~g-~~~~a~~~~~~~~-------------------~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m---- 158 (209)
..+-... |+-.|...+..+. + ........++..+++....+.+.++|++-
T Consensus 92 ~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~l 171 (339)
T 1ug3_A 92 ELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAGLSW 171 (339)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCG
T ss_pred hhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHHcCCCH
Confidence 2221111 3334444444331 0 11223455677777777788888888765
Q ss_pred -CCCCCHHhHHHHHHH
Q 045511 159 -DVKPNANTLVSVLSA 173 (209)
Q Consensus 159 -~~~p~~~t~~~li~~ 173 (209)
.+-|....+...++.
T Consensus 172 ~~f~P~~~~~~~~~~~ 187 (339)
T 1ug3_A 172 KEFLPEGQDIGAFVAE 187 (339)
T ss_dssp GGTSCTTCCHHHHHHH
T ss_pred HHhCCCchhHHHHHHH
Confidence 444544334444443
No 335
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=43.66 E-value=1.5e+02 Score=25.00 Aligned_cols=111 Identities=4% Similarity=-0.148 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHHhccCccHhH----HHHHHHHHHhCCChhhHHHHHHhc--CCCcHhHHHHHHHHHHhCCChHHHHHH
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFI----QNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVTWTTIISGLSKCGFHKEAIDM 154 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 154 (209)
+.+.|...+....+.+ ..+... +..+...+...+...++...++.. ...+.....-.+..-.+.|+++.|...
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566777777666544 223322 223333333445344555555543 223322233333444567999999999
Q ss_pred HhhC-CCC-CCHHhHHHHHHHhccccchhHHHHHHHHHHH
Q 045511 155 FCGI-DVK-PNANTLVSVLSACSSLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 155 ~~~m-~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 192 (209)
|..| .-. ....-.=.+-++....|+.++|..+|..+.+
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999 322 2333344566677788999999999988754
No 336
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=43.42 E-value=1.1e+02 Score=23.36 Aligned_cols=107 Identities=7% Similarity=0.056 Sum_probs=66.1
Q ss_pred cchHHHHHHhhhC---CCCCCH---HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHH
Q 045511 48 QNAIPLYNKMLNC---PSSYNH---YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 48 ~~a~~l~~~m~~~---g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
++|...|..+... ...++. ...-..+..+.+.-+ .++++.+.+.|+.|...++.=++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4566666666542 233322 222233333333333 356677778899998888888888888888899999
Q ss_pred HHHHhcC-CC-c---HhHH--HHHHH----HHHhCCChHHHHHHHhhC
Q 045511 122 QIFNSVV-FP-D---VVTW--TTIIS----GLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 122 ~~~~~~~-~~-~---~~~~--~~li~----~~~~~g~~~~a~~~~~~m 158 (209)
+++|.+- +. . ...| -+++. ......+.+++..+++.+
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 9999883 22 2 1222 22222 223457888899999887
No 337
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=43.28 E-value=36 Score=23.18 Aligned_cols=56 Identities=5% Similarity=0.045 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCcH--hHHHHHHHHHHhCCCh--HHHHHHHhhC
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPDV--VTWTTIISGLSKCGFH--KEAIDMFCGI 158 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~--~~a~~~~~~m 158 (209)
....+|.=|...|+.++|...++++..|+. .....+|..-...++. +.+..++..+
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L 71 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL 71 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788888888999999999998876642 2223333333333332 2345555555
No 338
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.13 E-value=38 Score=23.44 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=74.3
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH---HHHHHHHHHhC
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHY--TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI---QNSLLHFYVTV 114 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~~ 114 (209)
..++.|+.+.+.. +.+.|..++.. .-...+...++.|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 15 ~A~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 15 KATQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 3556677555444 44455444332 1223455556777765 4455555664443221 23556667778
Q ss_pred CChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC---HHhHHHHHHHhccccchhHHHHHHH
Q 045511 115 KDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPN---ANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 115 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
|+.+-+..+++.-..+ +...++ .+...+..|+.+-+..+++. |..++ ..-.+.+..++.+.+..+ +..
T Consensus 87 ~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~----~~~ 160 (240)
T 3eu9_A 87 GHLSMVVQLMKYGADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVD----PTR 160 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSST----THH
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHH----HHH
Confidence 8888887777653322 222223 34444567887766666654 33332 223344444443433333 233
Q ss_pred HHHHhccCCC
Q 045511 189 HSLRNLNENN 198 (209)
Q Consensus 189 ~~~~~~~~p~ 198 (209)
.+.+.|..++
T Consensus 161 ~L~~~~~~~~ 170 (240)
T 3eu9_A 161 LLLTFNVSVN 170 (240)
T ss_dssp HHHHTTCCTT
T ss_pred HHHhcCCCcc
Confidence 4455565554
No 339
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.05 E-value=28 Score=22.83 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=22.9
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
++..+...+..-.|.++++.+.+.+...+..|-=.-|+.+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444444566666666555545555544444455555543
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.50 E-value=35 Score=21.94 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=23.2
Q ss_pred HHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCC
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKD 116 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 116 (209)
+..+...+..-.|.++++.+.+.+...+..|--.-++.+...|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33443444445566666666665555555554455555555544
No 341
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=42.06 E-value=24 Score=22.84 Aligned_cols=71 Identities=8% Similarity=-0.030 Sum_probs=48.2
Q ss_pred HcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHH
Q 045511 42 TQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 42 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
.++++++.+..+. ++.+ -|.-.|...+..++.+.|+++++...+.| +...|.+.+..|-..=+++-++
T Consensus 17 kkN~rw~qSI~L~---KkDk------LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 17 RGSHMWKQSVELA---KKDS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp SSCCCCSSCCCCC---SCCC------CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred hccccHHHHHHHH---Hhcc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 4555566555442 2222 34556677778888888888888888777 6777778888877777777776
Q ss_pred HHH
Q 045511 122 QIF 124 (209)
Q Consensus 122 ~~~ 124 (209)
++-
T Consensus 85 Ela 87 (125)
T 3qil_A 85 ELA 87 (125)
T ss_dssp HTT
T ss_pred HHH
Confidence 663
No 342
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=41.67 E-value=15 Score=23.80 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=49.0
Q ss_pred HHHHHcCCCccchHHHHHHhhhCCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHHHHhC
Q 045511 38 LKLLTQSSTPQNAIPLYNKMLNCPS-SYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHFYVTV 114 (209)
Q Consensus 38 i~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~ 114 (209)
+...++.|+.+.+..+++. ....+ ..|..-.+ .+.. +..|+.+. ++.+.+.|..++.. .-.+.+...+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t-~L~~-~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKT-ALQV-MMFGSTAI----ALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCC-HHHH-SCTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCc-HHHH-HHcCCHHH----HHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 3444556666666666655 21111 11222222 2233 55565543 33344455444322 122344455556
Q ss_pred CChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 115 KDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 115 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
|+.+-+.-+++.-.. +|..-++.+ ...+..|+.+-+..+++.
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc
Confidence 666666666554322 222222222 233345666555555543
No 343
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=41.54 E-value=49 Score=22.74 Aligned_cols=88 Identities=10% Similarity=-0.075 Sum_probs=37.1
Q ss_pred HHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHH---hHHHHHHHhccccc
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLSACSSLGS 179 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~~g~ 179 (209)
+.+...+..|+.+-+..+++.-..+ |..-.+. +...++.|+.+-+..+++. |..|+.. -.+ .+....+.|+
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t-~l~~A~~~~~ 203 (223)
T 2f8y_A 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP-LFLAAREGSYETAKVLLDH-FANRDITDHMDRL-PRDIAQERMH 203 (223)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCC-HHHHHHHTTC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH-HHHHHHcCCHHHHHHHHHc-CCCCccccccCCC-HHHHHHHhcc
Confidence 3444455566666666665543221 1111222 2223345555555444444 3333221 111 2233334444
Q ss_pred hhHHHHHHHHHHHhccCCCch
Q 045511 180 RKLGKAIHAHSLRNLNENNII 200 (209)
Q Consensus 180 ~~~a~~~~~~~~~~~~~p~~~ 200 (209)
.+ +.+.+.+.|..+++.
T Consensus 204 ~~----i~~~L~~~g~~~~~~ 220 (223)
T 2f8y_A 204 HD----IVRLLDEYNLVRSPQ 220 (223)
T ss_dssp HH----HHHHHHHTTCSSCC-
T ss_pred hH----HHHHHHHcCCCcccc
Confidence 43 444455666655544
No 344
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=41.39 E-value=56 Score=19.52 Aligned_cols=67 Identities=7% Similarity=-0.093 Sum_probs=45.5
Q ss_pred hHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHH
Q 045511 50 AIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 124 (209)
Q Consensus 50 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 124 (209)
...+++.+.+.|+ .+..-+..+-. .....+.+..+++.+.++| ...|..++.++...|...-|..+-
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La~~L~ 90 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLAALLH 90 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHG
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHHHHHh
Confidence 4566777777665 34444444433 2567788999998887665 788889999988888766555443
No 345
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=40.95 E-value=1.2e+02 Score=23.40 Aligned_cols=77 Identities=6% Similarity=-0.051 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcCC-----CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccc
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGS 179 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~ 179 (209)
.+.+..-++.|+.+-++-+++.-.. .|..-++.|..+.+..|+.+-+.-++.. | ..-.+-+...+..|.
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-g-----a~~~taL~~Aa~~g~ 237 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-P-----VMLAYAEIHEFEYGE 237 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-H-----HHHHHHHHCTTTTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-C-----CccchHHHHHHHCCC
Confidence 4455555667777766666665333 2223344444443366766665555442 2 112233444556676
Q ss_pred hhHHHHHH
Q 045511 180 RKLGKAIH 187 (209)
Q Consensus 180 ~~~a~~~~ 187 (209)
.+-++-+.
T Consensus 238 ~evv~lL~ 245 (376)
T 2aja_A 238 KYVNPFIA 245 (376)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 66444333
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.74 E-value=83 Score=21.35 Aligned_cols=58 Identities=3% Similarity=-0.019 Sum_probs=33.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhccCc--cHhHHHHHHH------HHHhCCChhhHHHHHHhc
Q 045511 69 FTQALKACSLAHAHQKGLEIHAHVIKYGHLH--DIFIQNSLLH------FYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 69 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~------~~~~~g~~~~a~~~~~~~ 127 (209)
|..-+..+-. |++-++.++++..-+..-.+ +...|-.||. ...++|+...|.+++.+.
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444433 77777777777776655445 4455666665 123456666666666543
No 347
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=40.74 E-value=1e+02 Score=23.47 Aligned_cols=20 Identities=10% Similarity=0.193 Sum_probs=5.9
Q ss_pred HHHHHHhhCCCcccHHHHHH
Q 045511 20 QIHAQIIKIPQPHILNTLLK 39 (209)
Q Consensus 20 ~~~~~~~~~p~~~~~~~li~ 39 (209)
++++..+..|+-..||+++.
T Consensus 83 ~V~~~VG~EPSG~~FNsi~~ 102 (308)
T 2pby_A 83 EVFHKVGMEPTDYPFHSIAK 102 (308)
T ss_dssp HHHHHBCSCC----------
T ss_pred HHHHHhCCCCCCCCCcchhh
Confidence 45555566677777777654
No 348
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=40.72 E-value=1.6e+02 Score=24.57 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=36.0
Q ss_pred CCcccHHHHHHHHHcCC--CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHH
Q 045511 29 PQPHILNTLLKLLTQSS--TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNS 106 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 106 (209)
-+..-|..-|..+..++ +.......+.++..+=---+..-...++..|.+.|-.+.|.++.+.+.++-+.-+ ..+ .
T Consensus 477 ~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g-~~g-e 554 (570)
T 3f3f_C 477 GDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAH-NII-E 554 (570)
T ss_dssp CCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------
T ss_pred cCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCc-cHH-H
Confidence 34455555555555432 2233444444444432222445566677777777777777777666655443222 233 5
Q ss_pred HHHHHHhCCChhhH
Q 045511 107 LLHFYVTVKDIFSA 120 (209)
Q Consensus 107 ll~~~~~~g~~~~a 120 (209)
.+..|+|.|+++.+
T Consensus 555 AL~~f~rA~~~~~V 568 (570)
T 3f3f_C 555 SIANFSRAGKYELV 568 (570)
T ss_dssp --------------
T ss_pred HHHHHHHcCChhhc
Confidence 55566666666544
No 349
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.59 E-value=55 Score=22.70 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=12.4
Q ss_pred HHHHHHhCCChhhHHHHHHhc
Q 045511 107 LLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~~ 127 (209)
.+...++.|+.+-+..+++.-
T Consensus 114 ~L~~A~~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 114 PMIWATEYKHVDLVKLLLSKG 134 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCC
Confidence 344555667766666666543
No 350
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=40.57 E-value=32 Score=26.81 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCc----HhHHHHHHHHHHhCCC-hHHHHHHHhhC
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD----VVTWTTIISGLSKCGF-HKEAIDMFCGI 158 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~g~-~~~a~~~~~~m 158 (209)
....+|.=|...|++++|.+.+.++..|+ ...+..+..++-+... .+.+..++..+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L 74 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLL 74 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 45778888888888888888888887664 2344444444433211 22344555554
No 351
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.48 E-value=1e+02 Score=26.28 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=19.4
Q ss_pred cHhHHHHHH-----HHHHhCCChHHHHHHHhhCCCCC
Q 045511 131 DVVTWTTII-----SGLSKCGFHKEAIDMFCGIDVKP 162 (209)
Q Consensus 131 ~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~p 162 (209)
+..|+..|+ ..+..+|+++.|++.++++++-|
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 344555543 23367788888888777774444
No 352
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.41 E-value=1.2e+02 Score=23.05 Aligned_cols=98 Identities=6% Similarity=0.049 Sum_probs=56.0
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHhcc--CccHhHHHHHHHHHHhCCChhhHHHHHHh
Q 045511 54 YNKMLNCPSSYNHYTFTQALKACSLAH-----AHQKGLEIHAHVIKYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 54 ~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 126 (209)
++...+.+.+++..+...++..+.... +.+-..+...+-.+.|- .-++.....+-..|.+.|++.+|+.-|--
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 444556677888888888777775532 22233333444433331 23566777777788888888888887652
Q ss_pred cCCCcHhHHHHHHHHHHhC---CChHHH
Q 045511 127 VVFPDVVTWTTIISGLSKC---GFHKEA 151 (209)
Q Consensus 127 ~~~~~~~~~~~li~~~~~~---g~~~~a 151 (209)
-...|...+-.++--+... |...++
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 2212444554444444443 555554
No 353
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.01 E-value=45 Score=18.03 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=7.5
Q ss_pred hhhHHHHHHhcCCC
Q 045511 117 IFSAHQIFNSVVFP 130 (209)
Q Consensus 117 ~~~a~~~~~~~~~~ 130 (209)
++.|++.+.+|.-|
T Consensus 38 le~AmewL~k~~~~ 51 (54)
T 2cos_A 38 IEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhcCC
Confidence 55555555555433
No 354
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=39.73 E-value=40 Score=23.28 Aligned_cols=168 Identities=9% Similarity=-0.050 Sum_probs=82.2
Q ss_pred HhHHHHHHHHhhC---CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH------HHHHHHHHHHhccccHHHHH
Q 045511 16 KQLNQIHAQIIKI---PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH------YTFTQALKACSLAHAHQKGL 86 (209)
Q Consensus 16 ~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~ 86 (209)
+.+..+.+..... ++..-++.|. ..++.|+.+ +++.+.+.|-.++. .-.+.+ ...+..|+.+
T Consensus 16 ~~v~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~--- 86 (228)
T 2dzn_A 16 FKVQELLHSKPSLLLQKDQDGRIPLH-WSVSFQAHE----ITSFLLSKMENVNLDDYPDDSGWTPF-HIACSVGNLE--- 86 (228)
T ss_dssp HHHHHHHHHCGGGTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCCHH-HHHHHHCCHH---
T ss_pred HHHHHHHhcCccccccCCCCCCCHHH-HHHHcCCHH----HHHHHHhccccccccccCCCCCCCHH-HHHHHcCCHH---
Confidence 3444444443222 2333344444 445566654 44455555522222 223333 3344556654
Q ss_pred HHHHHHHHhccCccHh----HHHHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCC
Q 045511 87 EIHAHVIKYGHLHDIF----IQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGID 159 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 159 (209)
+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-..+ +..-.+ .+...+..|+.+-+..+++. |
T Consensus 87 -~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~-g 163 (228)
T 2dzn_A 87 -VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI-PLHRAASVGSLKLIELLCGL-G 163 (228)
T ss_dssp -HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHTT-T
T ss_pred -HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCHHHHHHHHhc-C
Confidence 555566666222221 1234555666888888888777754322 222222 34445567887776666654 3
Q ss_pred -CCCC---HHhHHHHHHHhccccchhHHHHHHHHHHHhccCCCc
Q 045511 160 -VKPN---ANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 160 -~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
..++ ..-.+.+ ...+..|+.+-+..++ .+.|..++.
T Consensus 164 ~~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll---~~~ga~~~~ 203 (228)
T 2dzn_A 164 KSAVNWQDKQGWTPL-FHALAEGHGDAAVLLV---EKYGAEYDL 203 (228)
T ss_dssp CCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHH---HHHCCCSCC
T ss_pred cccccCcCCCCCCHH-HHHHHcCCHHHHHHHH---HhcCCCCCc
Confidence 3332 2333333 3344566665444333 156766654
No 355
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=39.33 E-value=74 Score=20.99 Aligned_cols=149 Identities=9% Similarity=0.000 Sum_probs=73.0
Q ss_pred HHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhCCCh
Q 045511 40 LLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTVKDI 117 (209)
Q Consensus 40 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~ 117 (209)
..++.|+.+.+..+++.-...--.+|..-++. +...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 85 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSP-LHWACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGHR 85 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCCCH-HHHHHHcCcHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 34556676666665543221111123222333 33344566654 4555556666555331 23455666677888
Q ss_pred hhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHh---HHHHHHHhccccchhHHHHHHHHHH
Q 045511 118 FSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT---LVSVLSACSSLGSRKLGKAIHAHSL 191 (209)
Q Consensus 118 ~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~~~ 191 (209)
+-+..+++.-..+ |..-.+ .+...+..|+.+-+..+++. |..++... .+. +....+ ..-..+.+.+.
T Consensus 86 ~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tp-l~~A~~----~~~~~~~~~L~ 158 (179)
T 3f6q_A 86 DIVQKLLQYKADINAVNEHGNV-PLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMP-VDKAKA----PLRELLRERAE 158 (179)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCG-GGGSCH----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCc-HHHHHH----HHHHHHHHHHH
Confidence 8777777654322 222222 33444566777666555554 44433211 111 111122 22345666777
Q ss_pred HhccCCCch
Q 045511 192 RNLNENNII 200 (209)
Q Consensus 192 ~~~~~p~~~ 200 (209)
+.|..++..
T Consensus 159 ~~g~~~~~~ 167 (179)
T 3f6q_A 159 KMGQNLNRI 167 (179)
T ss_dssp HTTCCCSCB
T ss_pred HhhcCcccC
Confidence 888777653
No 356
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=39.07 E-value=1.2e+02 Score=23.66 Aligned_cols=41 Identities=5% Similarity=-0.011 Sum_probs=23.0
Q ss_pred HHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHHHHHHhc
Q 045511 87 EIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 87 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 127 (209)
++++.+.+.|+.|...++.=++..+.+.=.++.+.+++|.+
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~ 257 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTY 257 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 34555555566666655555555555555555555555543
No 357
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=38.17 E-value=91 Score=21.05 Aligned_cols=166 Identities=10% Similarity=0.054 Sum_probs=104.5
Q ss_pred HhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 045511 16 KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKY 95 (209)
Q Consensus 16 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 95 (209)
.....+.+.. ..||...-...+..+.+.+..+....+.+.+ . .+|...-...+.++++.+..+....+.+ +.+
T Consensus 14 ~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~- 86 (201)
T 3ltj_A 14 EKVEMYIKNL-QDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK- 86 (201)
T ss_dssp HHHHHHHHHT-TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT-
T ss_pred cchHHHHHHh-cCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc-
Confidence 3344444444 2366666666777777777654444444444 3 2566666667777777777654444443 332
Q ss_pred ccCccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhc
Q 045511 96 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 175 (209)
Q Consensus 96 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~ 175 (209)
.++..+-...+.++.+.|+.+....+...+..++...-...+.++++.++.+....+...+. .+|...-...+.+..
T Consensus 87 --d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 87 --DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALG 163 (201)
T ss_dssp --CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 46777888888889999988777777777777887777788888888877544333333332 356666666677777
Q ss_pred cccchhHHHHHHHHHHH
Q 045511 176 SLGSRKLGKAIHAHSLR 192 (209)
Q Consensus 176 ~~g~~~~a~~~~~~~~~ 192 (209)
+.|+.+ +...+..+.+
T Consensus 164 ~~~~~~-~~~~L~~~l~ 179 (201)
T 3ltj_A 164 EIGGER-VRAAMEKLAE 179 (201)
T ss_dssp HHCSHH-HHHHHHHHHH
T ss_pred HhCchh-HHHHHHHHHh
Confidence 777654 4444444443
No 358
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=37.80 E-value=70 Score=26.65 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=23.2
Q ss_pred HhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHH
Q 045511 125 NSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGK 184 (209)
Q Consensus 125 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~ 184 (209)
..++-.+..--.-++..|++.|-.+.|.++++.+ ..--+...| ..+..|+++|++++++
T Consensus 509 pr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 509 PHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp GGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred ccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhcc
Confidence 3334445555666777777888888888887777 222233445 5566677777777654
No 359
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.32 E-value=93 Score=20.89 Aligned_cols=70 Identities=19% Similarity=0.072 Sum_probs=49.3
Q ss_pred cchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhC--CCCCCHHHHHHHHHHHhccccHH
Q 045511 13 LSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNC--PSSYNHYTFTQALKACSLAHAHQ 83 (209)
Q Consensus 13 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~ 83 (209)
.+.+.+.+..+..+.+++. .=..++..+.+.+..-.|.++++.+.+. +...+..|.-.-|..+...|-+.
T Consensus 15 ~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455566666666665544 3345667777777888999999999987 76677777777777777777543
No 360
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=37.28 E-value=62 Score=19.05 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHhhC-CCCCCHHhHHHHHHHhccccchhHHHHH
Q 045511 153 DMFCGI-DVKPNANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 153 ~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
++++++ ++.|+..||+-+.....+.--...+..+
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~i 58 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEA 58 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHH
Confidence 456666 7888888888877776554433333333
No 361
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.29 E-value=1.4e+02 Score=22.60 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCCc---HhHHHHHHHHHHhCCC--hHHHHHHHhhC---CCCCCHHh
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVTWTTIISGLSKCGF--HKEAIDMFCGI---DVKPNANT 166 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m---~~~p~~~t 166 (209)
-.+.++.=|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+ |+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45788899999999999999999997663 3455666666666543 44567777777 44444433
No 362
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=35.85 E-value=1e+02 Score=24.15 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=44.7
Q ss_pred cHhHHHHHHHHHHhCCC--hHHHHHHHhhC--CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHhccC
Q 045511 131 DVVTWTTIISGLSKCGF--HKEAIDMFCGI--DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNE 196 (209)
Q Consensus 131 ~~~~~~~li~~~~~~g~--~~~a~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 196 (209)
+..+|-.+|..+...++ .+++..+++.| |--++...=.-|+....+.-..++...+.+-|++++..
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~ 91 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHP 91 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCc
Confidence 44578888888887776 45788888888 65555544444455556666778888888888877643
No 363
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.78 E-value=1e+02 Score=20.96 Aligned_cols=164 Identities=11% Similarity=0.035 Sum_probs=102.4
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc
Q 045511 18 LNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97 (209)
Q Consensus 18 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 97 (209)
+..+.+... .++...=...+..+.+.|..+....+. ++... +|...=...+.++++.++.+....+.+. .+
T Consensus 21 ~~~L~~~L~-~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~-l~--- 91 (211)
T 3ltm_A 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGDERAVEPLI-KALKD---EDAWVRRAAADALGQIGDERAVEPLIKA-LK--- 91 (211)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHH-TT---
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHH-Hc---
Confidence 344444443 366666666677777777744444444 44432 5666666777777777775544444333 32
Q ss_pred CccHhHHHHHHHHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHhccc
Q 045511 98 LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL 177 (209)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~ 177 (209)
.++..+-...+.++.+.|+.+....+..-+..++...-...+.++.+.|+.+..-.+..-+ -.||...-...+.+..+.
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKAL-KDEDGWVRQSAADALGEI 170 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 4677788888889999998877777777777788877778888888888754433333333 245666666667777777
Q ss_pred cchhHHHHHHHHHHH
Q 045511 178 GSRKLGKAIHAHSLR 192 (209)
Q Consensus 178 g~~~~a~~~~~~~~~ 192 (209)
++.+ +...+..+.+
T Consensus 171 ~~~~-~~~~L~~~l~ 184 (211)
T 3ltm_A 171 GGER-VRAAMEKLAE 184 (211)
T ss_dssp CSHH-HHHHHHHHHH
T ss_pred Cchh-HHHHHHHHHh
Confidence 6644 4444444443
No 364
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.64 E-value=1e+02 Score=20.94 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=33.1
Q ss_pred cchHHHHHHhhhCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH
Q 045511 48 QNAIPLYNKMLNCPSSY-NHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI 101 (209)
Q Consensus 48 ~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 101 (209)
+++.++|..|..+|+-- -..-|...-..+...|++..|.++|..=.+++-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 45666777777666533 2344666666666667777777777666666555543
No 365
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=34.56 E-value=53 Score=17.32 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=22.3
Q ss_pred HhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhh
Q 045511 16 KQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKML 58 (209)
Q Consensus 16 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 58 (209)
..+..+.+.| |+...+.+-=..-...|+.+.|..++-.|.
T Consensus 6 ~~v~~L~EMF---P~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 6 SKLSILMDMF---PAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHC---SSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3444555555 555444333333345678888877776663
No 366
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=33.69 E-value=47 Score=20.22 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred hHHHHHHHhhC---CCCC---CHHhHHHHHHHhccccchhHHHHHHHHHHHhccCC
Q 045511 148 HKEAIDMFCGI---DVKP---NANTLVSVLSACSSLGSRKLGKAIHAHSLRNLNEN 197 (209)
Q Consensus 148 ~~~a~~~~~~m---~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 197 (209)
.++|+++...| .-.| |..|-..+++.+-..|-+..+..+..+-.+.|..|
T Consensus 13 IdKALDFI~~M~tSas~P~sMdESTAKGifKyL~elGvPas~~dv~aRg~qegWn~ 68 (115)
T 2es9_A 13 IEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNP 68 (115)
T ss_dssp HHHHHHHHHTSCTTCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 45666666666 1122 44556666666666666666666665555555443
No 367
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=33.68 E-value=72 Score=21.27 Aligned_cols=143 Identities=10% Similarity=-0.010 Sum_probs=72.2
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY---TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFY 111 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~ 111 (209)
|+. -++.|+.+-+..++ +.|..||.. -.+. +...+..+..+. ...+.+.|..++... -.+.+...
T Consensus 8 L~~-Aa~~G~~~~v~~Ll----~~Gadvn~~d~~g~t~-l~~a~~~~~~~~----~~~ll~~gad~~~~d~~g~TpLh~A 77 (169)
T 4gpm_A 8 LIE-AAENGNKDRVKDLI----ENGADVNASDSDGRTP-LHHAAENGHKEV----VKLLISKGADVNAKDSDGRTPLHHA 77 (169)
T ss_dssp HHH-HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHH-HHHcCCHHHHHHHH----HCCCCCCCcCCCCCCH-HHHHHHcCCHHH----HHHHHhcccchhhhccCCCCHHHHH
Confidence 444 45678866655554 456655542 2223 333445555543 344456665554321 12345555
Q ss_pred HhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHH---hHHHHHHHhccccchhHHHH
Q 045511 112 VTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLSACSSLGSRKLGKA 185 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~~g~~~~a~~ 185 (209)
+..|+.+-++.+++.=.. +|..-++.|.. -+..|+.+-+.-+++. |..|+.. -.+.+.-+ ++.|+.+
T Consensus 78 ~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~-A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A-~~~g~~~---- 150 (169)
T 4gpm_A 78 AENGHKEVVKLLISKGADVNAKDSDGRTPLHH-AAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLA-REHGNEE---- 150 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-HHTTCHH----
T ss_pred HHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHH-HHcCCHH----
Confidence 677888877777765332 23333334433 3467777766655554 5555432 23344333 3455554
Q ss_pred HHHHHHHhccC
Q 045511 186 IHAHSLRNLNE 196 (209)
Q Consensus 186 ~~~~~~~~~~~ 196 (209)
+.+.+.++|-.
T Consensus 151 iv~~Ll~~GA~ 161 (169)
T 4gpm_A 151 VVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHCCCC
Confidence 44455555543
No 368
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=33.38 E-value=42 Score=21.71 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEI 88 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 88 (209)
..|-..|...+.+++.+-|.++++-..+.| +...|.++|-.|-..=+++.++++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 556677888888999999999999998877 678888999999888887776654
No 369
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=33.34 E-value=1.1e+02 Score=22.28 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHcC-CCccchHHH-----------HHHhhhCCCCCCHHHHHHHHHHHh
Q 045511 30 QPHILNTLLKLLTQS-STPQNAIPL-----------YNKMLNCPSSYNHYTFTQALKACS 77 (209)
Q Consensus 30 ~~~~~~~li~~~~~~-g~~~~a~~l-----------~~~m~~~g~~p~~~t~~~ll~~~~ 77 (209)
....|+..+...+.. |++.++... -+++.+.+..++...|...|..|+
T Consensus 128 ~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~~~~~~~Y~~WI~~Y~ 187 (248)
T 3no6_A 128 SGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS 187 (248)
T ss_dssp HHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTTCCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Confidence 347788888777777 776664332 222333322122345666666666
No 370
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=33.15 E-value=33 Score=25.06 Aligned_cols=136 Identities=14% Similarity=0.019 Sum_probs=55.5
Q ss_pred HHHHhhhCCCCCCHHHH--HHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHHHHHhCCChhhHHHHHHhcC
Q 045511 53 LYNKMLNCPSSYNHYTF--TQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSVV 128 (209)
Q Consensus 53 l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~ 128 (209)
+++.+.+.|..+|...- .+.|...+..|+.+.+ +.+.+.|..++... -.+.+...+..+..+-...+++.-.
T Consensus 68 ~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v----~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~ 143 (269)
T 4b93_B 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLI----PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143 (269)
T ss_dssp -------CCCCTTCCCTTSCCHHHHHHHTTCTTHH----HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH----HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCC
Confidence 44455566655443211 1122333455555433 33444443332211 1223344445555555555554432
Q ss_pred CC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHH---hHHHHHHHhccccchhHHHHHHHHHHHhccCCCc
Q 045511 129 FP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 129 ~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
.+ |..-++.|. ..+..|+.+-+..+++. |..||.. -.+.|. ..+..|+.+- .+.+.+.|..|+.
T Consensus 144 ~~n~~d~~g~TpL~-~A~~~g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh-~A~~~g~~~~----v~~Ll~~Gad~~~ 213 (269)
T 4b93_B 144 KPNKKDLSGNTPLI-YACSGGHHELVALLLQH-GASINASNNKGNTALH-EAVIEKHVFV----VELLLLHGASVQV 213 (269)
T ss_dssp CSCCCCTTCCCHHH-HHHHTTCGGGHHHHHHT-TCCTTCBCTTSCBHHH-HHHHTTCHHH----HHHHHHTTCCSCC
T ss_pred CCCCCCCCCCCHHH-HHHHCCCHHHHHHHHHC-CCCCCccccCCCcHHH-HHHHcCCHHH----HHHHHHCCCCCCC
Confidence 22 222223333 33456777666555544 4444332 223333 3334566553 3344556666543
No 371
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=32.88 E-value=1.3e+02 Score=21.40 Aligned_cols=126 Identities=11% Similarity=-0.027 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHhc-cCccHhHHHHHHHHHHhCCChhhHHHHHHhcCC-----CcHhHHH
Q 045511 64 YNHYTFTQALKACSLAH-AHQKGLEIHAHVIKYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----PDVVTWT 136 (209)
Q Consensus 64 p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 136 (209)
.+..-+..++..+...+ ....+..+|..+-..| -..+..-+-.++..+......++...+|..+.. -+..-+.
T Consensus 109 I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~ 188 (256)
T 2jul_A 109 VDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEML 188 (256)
T ss_dssp EEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHH
T ss_pred CCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 34445555555543222 2234556666554332 112222333333333333345566677766632 2233333
Q ss_pred HHHHHHHh-CC-----------ChHHHHHHHhhCCC-CCCHHhHHHHHHHhccccchhHHHHHHHH
Q 045511 137 TIISGLSK-CG-----------FHKEAIDMFCGIDV-KPNANTLVSVLSACSSLGSRKLGKAIHAH 189 (209)
Q Consensus 137 ~li~~~~~-~g-----------~~~~a~~~~~~m~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 189 (209)
.++..+.. .| .-+.+..+|+.+.. .-...+|.-++..+.+...+-++.+.++.
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 189 AIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp HHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCSTTCSBCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHhCHHHHHHHHhhcc
Confidence 33333321 13 23567788888721 12236788888888777777766666654
No 372
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=31.61 E-value=1.1e+02 Score=22.87 Aligned_cols=137 Identities=9% Similarity=0.121 Sum_probs=76.3
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHH-----HHH---HHHHHHhccccHHHHHHHHHHHHHhccCccHhHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY-----TFT---QALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQ 104 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-----t~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 104 (209)
-.|.+...+.-.-+-++|...|..+......++.. ... ..+..+.+.-+ .++++.+.+.|+.|...++
T Consensus 117 Gm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~ 192 (310)
T 3hzj_A 117 GQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL----PDLHSHFSDLNLEAHMYAS 192 (310)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHTCCGGGTSH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC----hHHHHHHHHcCCChHHHHH
Confidence 34444443333335678888888876542122221 111 11222222223 3567777888999999998
Q ss_pred HHHHHHHHhCCChhhHHHHHHhcC--CCcHhHHHHH--H----HHHHhCCChHHHHHHHh-hC-CCCCCHHhHHHHHHHh
Q 045511 105 NSLLHFYVTVKDIFSAHQIFNSVV--FPDVVTWTTI--I----SGLSKCGFHKEAIDMFC-GI-DVKPNANTLVSVLSAC 174 (209)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l--i----~~~~~~g~~~~a~~~~~-~m-~~~p~~~t~~~li~~~ 174 (209)
.=++..+++.=.++.+.+++|.+- .+....+-++ + ..+. ..+.++....|. .+ ...++......+++-.
T Consensus 193 ~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll-~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A 271 (310)
T 3hzj_A 193 QWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL-QADFEGALKFFRVQLPKRYRAEENARRLMEQA 271 (310)
T ss_dssp HHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH-TCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHhCcccccccccHHHHHHHH
Confidence 889988888878999999999872 2333222111 1 1222 247888888886 33 2222333344444443
No 373
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.46 E-value=1.5e+02 Score=21.43 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=57.1
Q ss_pred hccCCCcchHhHHHHHHHHhhCCC-----cccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc
Q 045511 7 KSLKPTLSFKQLNQIHAQIIKIPQ-----PHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA 81 (209)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 81 (209)
...+.++|.+.+.+..+.....++ ...-...+..-.....-.-+..+.+++.. .++.......++.+.+.|+
T Consensus 30 A~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~ 106 (235)
T 2d2s_A 30 ARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENMIKLGL 106 (235)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Confidence 667778888888888877755443 12333344444444444556666666643 4567778888899999999
Q ss_pred HHHHHHHHHHHHH
Q 045511 82 HQKGLEIHAHVIK 94 (209)
Q Consensus 82 ~~~a~~~~~~m~~ 94 (209)
.+.|.++|-....
T Consensus 107 ~~~A~~lfL~~rs 119 (235)
T 2d2s_A 107 PEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 9999999865543
No 374
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=31.20 E-value=81 Score=22.32 Aligned_cols=21 Identities=0% Similarity=-0.083 Sum_probs=12.3
Q ss_pred CcccHHHHHHHHHcCCCccch
Q 045511 30 QPHILNTLLKLLTQSSTPQNA 50 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a 50 (209)
....|...+...+..|++.++
T Consensus 112 ~~~aY~~~l~~~a~~~~~~~~ 132 (221)
T 3ibx_A 112 ANKSYTSYMLAEGFKGSIKEV 132 (221)
T ss_dssp HHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHH
Confidence 336666666666666655544
No 375
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=30.82 E-value=1.1e+02 Score=19.85 Aligned_cols=117 Identities=10% Similarity=0.011 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCccchHHHHHHhhhCCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHH
Q 045511 35 NTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH---YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLH 109 (209)
Q Consensus 35 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~ 109 (209)
...+..-++.|+.+-+..++ +.|..++. .-.+ .+...+..|+.+ +++.+.+.|..++.. .-.+.+.
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILM----ANGADVNAEDASGWT-PLHLAAFNGHLE----IVEVLLKNGADVNAVDHAGMTPLR 85 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cchHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCCHHH
Confidence 33444456667766555444 34544332 2233 344445566654 444555566554432 1234556
Q ss_pred HHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCC
Q 045511 110 FYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP 162 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p 162 (209)
..+..|+.+-+.-+++.-..+ |..-. +.+...+..|+.+.+..+++. |..+
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~-g~~~ 139 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGADVNANDMEGH-TPLHLAAMFGHLEIVEVLLKN-GADV 139 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 666777877777776653222 22222 233344456776666555544 4443
No 376
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=30.65 E-value=94 Score=19.76 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=9.4
Q ss_pred HHHHHhCCChhhHHHHHHh
Q 045511 108 LHFYVTVKDIFSAHQIFNS 126 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~ 126 (209)
+...+..|+.+-+.-+++.
T Consensus 71 L~~A~~~~~~~~v~~Ll~~ 89 (153)
T 1awc_B 71 LHMAASEGHANIVEVLLKH 89 (153)
T ss_dssp HHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344455555555555543
No 377
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=30.60 E-value=1.2e+02 Score=20.16 Aligned_cols=108 Identities=6% Similarity=-0.058 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccC--ccHhHHHHHHHHH
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHL--HDIFIQNSLLHFY 111 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~ 111 (209)
++.++..+...|-+|+.+.-+++|...| |...+..++..|. +.+.+.+..+.+.--. .|......+.+.+
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~~~~---~~~~~~ell~~Fl-----~d~~~~l~~L~~al~~~~~D~~~l~~~aH~L 81 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQDEN---NPEFVFEVVSLFF-----DDSERILKDLSFAVDQQSIDFKKVDAHVHQF 81 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTCBTT---BTTHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhhcCC---CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 4456666667777775555555554432 3344555555552 2233333333322111 1333332222222
Q ss_pred HhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 112 VTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 112 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
-.....-.| ........-+..+++.|+.+.+...+..+
T Consensus 82 KGss~~lGa---------~~l~~~c~~lE~~~~~~~~~~~~~~l~~l 119 (153)
T 3us6_A 82 KGSSASIGA---------QRVKNSCVAFRNFCEEQNIDACRRCLQQV 119 (153)
T ss_dssp HHHHHHHTC---------HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 211111111 12223344566677777777777666664
No 378
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.48 E-value=92 Score=24.15 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=55.2
Q ss_pred HHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCC
Q 045511 73 LKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGF 147 (209)
Q Consensus 73 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~ 147 (209)
+...+..|+.+ +++.+.+.|..++.. .-.+.+...++.|+.+-+..+++.-... +..-++ .+...+..|+
T Consensus 84 L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~ 158 (437)
T 1n11_A 84 LHCAARIGHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGK 158 (437)
T ss_dssp HHHHHHHTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHCCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCC
Confidence 33344555543 344445555544422 1223445556667777777776654221 111122 3334456677
Q ss_pred hHHHHHHHhhCCCCCCHH---hHHHHHHHhccccchhHHHHHHHHHHHhccCCCc
Q 045511 148 HKEAIDMFCGIDVKPNAN---TLVSVLSACSSLGSRKLGKAIHAHSLRNLNENNI 199 (209)
Q Consensus 148 ~~~a~~~~~~m~~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 199 (209)
.+.+..+++. |..|+.. ..+. +...+..|+.+ +.+.+.+.|..|+.
T Consensus 159 ~~~v~~Ll~~-g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~ 207 (437)
T 1n11_A 159 VRVAELLLER-DAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHS 207 (437)
T ss_dssp HHHHHHHHHT-TCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCC
T ss_pred HHHHHHHHhC-CCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCC
Confidence 7666555554 3333321 1222 33333455554 44455566666554
No 379
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.46 E-value=65 Score=23.06 Aligned_cols=91 Identities=9% Similarity=-0.028 Sum_probs=52.8
Q ss_pred CcccHHHHHHHHH--cCCCccchHHHHHHhhh---------CCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcc
Q 045511 30 QPHILNTLLKLLT--QSSTPQNAIPLYNKMLN---------CPSS-YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGH 97 (209)
Q Consensus 30 ~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~---------~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 97 (209)
+..-++.|..++. +.|+.+-+..+++.-.. .+.. .|..-.+.|..+ +..|+.+ +.+.+.+.|.
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A-~~~g~~~----~v~~Ll~~ga 125 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA-IERRNMT----LVTLLVENGA 125 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHH-HHTTCHH----HHHHHHHTTC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHH-HHcCCHH----HHHHHHHCCC
Confidence 4455667776665 35777777766665322 1111 222233333333 4566665 4455556676
Q ss_pred CccHhH----------------HHHHHHHHHhCCChhhHHHHHH
Q 045511 98 LHDIFI----------------QNSLLHFYVTVKDIFSAHQIFN 125 (209)
Q Consensus 98 ~~~~~~----------------~~~ll~~~~~~g~~~~a~~~~~ 125 (209)
.++... -.+.+...+..|+.+-+.-+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 555432 3456677788899999888888
No 380
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.27 E-value=1.5e+02 Score=21.06 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=12.5
Q ss_pred HHHHHhCCChHHHHHHHhhC
Q 045511 139 ISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m 158 (209)
+..|.+.|.+++|.++|++.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 34556666666666666664
No 381
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.86 E-value=1.3e+02 Score=20.36 Aligned_cols=61 Identities=3% Similarity=-0.085 Sum_probs=45.2
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCC--CHHHHHHHHH-H-----HhccccHHHHHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSY--NHYTFTQALK-A-----CSLAHAHQKGLEIHAHVIK 94 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~t~~~ll~-~-----~~~~~~~~~a~~~~~~m~~ 94 (209)
.|...+..|-. |++-+|.++|+..-...-.+ ....|.-||+ . ..+.|+...|..++..-..
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555554444 99999999999998876666 5677788887 2 2456899999998887765
No 382
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.51 E-value=2.2e+02 Score=23.21 Aligned_cols=92 Identities=7% Similarity=-0.063 Sum_probs=56.5
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYV 112 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 112 (209)
.|..-.+.+...|++++|-.+--.-. .|+--+..|++.+-..=...|...-....|..+.+.| ..+..----+++.-.
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL 440 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVL 440 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHH
Confidence 34444555666677777666654443 3445566666666665556666666777777777776 455544445566666
Q ss_pred hCCChhhHHHHHHh
Q 045511 113 TVKDIFSAHQIFNS 126 (209)
Q Consensus 113 ~~g~~~~a~~~~~~ 126 (209)
..|+.+-.++++.+
T Consensus 441 ~q~r~~llekWl~e 454 (494)
T 1bpo_A 441 QQGRKQLLEKWLKE 454 (494)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHhc
Confidence 67777766666654
No 383
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=29.49 E-value=1.5e+02 Score=21.00 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=13.6
Q ss_pred CcccHHHHHHHHHcC-CCccch
Q 045511 30 QPHILNTLLKLLTQS-STPQNA 50 (209)
Q Consensus 30 ~~~~~~~li~~~~~~-g~~~~a 50 (209)
....|...+...+.. |++.++
T Consensus 109 ~~~aY~~~l~~~a~~~~~~~~~ 130 (229)
T 4fn6_A 109 SGDHYIKHMYFQAHSRENAIYT 130 (229)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHH
Confidence 336777777777766 666554
No 384
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=29.22 E-value=1.3e+02 Score=20.16 Aligned_cols=28 Identities=4% Similarity=-0.011 Sum_probs=12.0
Q ss_pred hHHHHHHHhhCCC-CCCHHhHHHHHHHhc
Q 045511 148 HKEAIDMFCGIDV-KPNANTLVSVLSACS 175 (209)
Q Consensus 148 ~~~a~~~~~~m~~-~p~~~t~~~li~~~~ 175 (209)
.+++..+|+.+.. .-...+|.-++..+.
T Consensus 128 ~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 156 (191)
T 1y1x_A 128 EQTFQALMRKFDRQRRGSLGFDDYVELSI 156 (191)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence 3445555555511 112244555444443
No 385
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=29.07 E-value=50 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCC
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVF 129 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 129 (209)
.-|.|++.|..+|+++.|.+++..++.
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 458889999999999999999998754
No 386
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=28.96 E-value=69 Score=24.46 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=59.4
Q ss_pred HHHHHHHcCCCccchHHHHH----HhhhCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHH
Q 045511 36 TLLKLLTQSSTPQNAIPLYN----KMLNCPSSYNHY--TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSL 107 (209)
Q Consensus 36 ~li~~~~~~g~~~~a~~l~~----~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~l 107 (209)
+.+...+..|+.+-+..++. .+.+.|..+|.. .-.+.|...+..|+.+ +++.+.+.|..++.. .-.+.
T Consensus 127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~ 202 (373)
T 2fo1_E 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR----LVAYLMKAGADPTIYNKSERSA 202 (373)
T ss_dssp CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTCCCH
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHH----HHHHHHHCCCCCcccCCCCCCH
Confidence 34455566677766665553 233555544332 1122233334556554 555566667655532 12345
Q ss_pred HHHHHhCCChhhHHHHHHhc------CCCcHhHHHHHHHHHHhCC--ChHHHHHHHhh
Q 045511 108 LHFYVTVKDIFSAHQIFNSV------VFPDVVTWTTIISGLSKCG--FHKEAIDMFCG 157 (209)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~~------~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~ 157 (209)
+...+..|+.+-+..+++.- ...+..-++.+..+....+ +.+.+..++..
T Consensus 203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~ 260 (373)
T 2fo1_E 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260 (373)
T ss_dssp HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence 66667788888777776532 2234444455555444333 34444444433
No 387
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=28.51 E-value=79 Score=19.23 Aligned_cols=32 Identities=6% Similarity=0.132 Sum_probs=23.2
Q ss_pred hCCChhhHHHHHHhcCCCcHhHHHHHHHHHHh
Q 045511 113 TVKDIFSAHQIFNSVVFPDVVTWTTIISGLSK 144 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 144 (209)
.....+.|.++++.++..+..+|..++.++..
T Consensus 47 ~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~ 78 (100)
T 3crd_A 47 QTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE 78 (100)
T ss_dssp CSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 34566778888887777777777777777754
No 388
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.32 E-value=84 Score=23.19 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=64.7
Q ss_pred HHHHHHcCCCccchHHHHHHhhhCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHHHH
Q 045511 37 LLKLLTQSSTPQNAIPLYNKMLNCPSSYNHY--TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHFYV 112 (209)
Q Consensus 37 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~ 112 (209)
-+...++.|+.+.+..++.. .|..++.. .-.+.+...+..|+.+ +++.+.+.|..++.. .-.+.+...+
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVR----IVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 34455677887777776643 23322221 1123344455667765 445555667655433 2234566667
Q ss_pred hCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCC
Q 045511 113 TVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKP 162 (209)
Q Consensus 113 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p 162 (209)
..|+.+-+..+++.-.. ++..-++. +...+..|+.+-+..+++. |..|
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-g~~~ 150 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTP-LHEAASKNRVEVCSLLLSH-GADP 150 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHc-CCCC
Confidence 88888888888776432 22222333 3344567888777666665 4443
No 389
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=28.28 E-value=1.9e+02 Score=21.79 Aligned_cols=92 Identities=11% Similarity=-0.096 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhccCccH-----hHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLA--HAHQKGLEIHAHVIKYGHLHDI-----FIQ 104 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~~~~-----~~~ 104 (209)
..|..++-+++......+|..+.+-|+..| .|..++.-+ ++.. .++....+.|...-...+..+. ..+
T Consensus 72 G~f~~ll~~l~~~~~~~dA~~L~~A~kg~G--tde~~lieI---L~tRs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~ 146 (315)
T 1dm5_A 72 GNYEAAALALLRKPDEFLAEQLHAAMKGLG--TDKNALIDI---LCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNF 146 (315)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHSSS--CCHHHHHHH---HSSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHH
T ss_pred ccHHHHHHHHccChhHHHHHHHHHHhhcCC--Cchhhhhhh---HhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCchH
Confidence 356677777776655567788888886644 455544333 3332 2334444444443322222221 234
Q ss_pred HHHHHHHHhCCCh-----------hhHHHHHHhcC
Q 045511 105 NSLLHFYVTVKDI-----------FSAHQIFNSVV 128 (209)
Q Consensus 105 ~~ll~~~~~~g~~-----------~~a~~~~~~~~ 128 (209)
..++.++++..+. .+|..+++.+.
T Consensus 147 ~~~L~~lv~~~r~~~~~vd~~~a~~dA~~L~~A~~ 181 (315)
T 1dm5_A 147 QRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGE 181 (315)
T ss_dssp HHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHhh
Confidence 5555555554332 45777777774
No 390
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=28.04 E-value=52 Score=22.24 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=16.0
Q ss_pred hhHHHHHHhcCC-CcHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 118 FSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 118 ~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
++...++..... .....|.-.+..+.+. +.+.+.|+.+
T Consensus 115 ~~~~~l~~~~dd~dG~I~~~EF~~~~~~~---~~~~~~F~~~ 153 (174)
T 2i7a_A 115 ELLHLVTLRYSDSVGRVSFPSLVCFLMRL---EAMAKTFRNL 153 (174)
T ss_dssp HHHHHHHHHHSCTTSEECHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEcHHHHHHHHHHH---HHHHHHHHHh
Confidence 344444444431 2234444444444332 3344555554
No 391
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.94 E-value=1.2e+02 Score=19.32 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=19.2
Q ss_pred CCCCCHHhHHHHHHHhccccchhHHHHHHHHHHHh
Q 045511 159 DVKPNANTLVSVLSACSSLGSRKLGKAIHAHSLRN 193 (209)
Q Consensus 159 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 193 (209)
.+.|+...--.-|..+...+|++.|.+++..+...
T Consensus 56 ~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 56 KLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 44444333333344445667777777777766544
No 392
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=27.86 E-value=68 Score=23.27 Aligned_cols=154 Identities=9% Similarity=0.057 Sum_probs=77.0
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCC-C---CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPS-S---YNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF-- 102 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-- 102 (209)
+|..-++.|.. .++.|+.+-+.. +.+.|. . .|..-++.+..++........-.+++..+.+.|..++..
T Consensus 107 ~d~~g~T~Lh~-A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 181 (276)
T 4hbd_A 107 ADSNGNTALHY-SVSHANFPVVQQ----LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ 181 (276)
T ss_dssp CCTTSCCHHHH-HHHTTCHHHHHH----HHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT
T ss_pred CCCCCCCHHHH-HHHCCCHHHHHH----HHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC
Confidence 34444444444 345666544443 444442 2 233334444444433333344455666666776444332
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCH---HhHHHHHHHhcc
Q 045511 103 IQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSS 176 (209)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~---~t~~~li~~~~~ 176 (209)
.-.+.+...+..|+.+-+..+++.=..+ |..-++.|.. -+..|+.+-+.-+++.-|..++. .-.+. +...++
T Consensus 182 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~-A~~~g~~~iv~~Ll~~~gad~~~~d~~g~Tp-L~~A~~ 259 (276)
T 4hbd_A 182 AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC-ACEHGHKEIAGLLLAVPSCDISLTDRDGSTA-LMVALD 259 (276)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHHTCHHHHHHHHTSTTCCTTCCCTTSCCH-HHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHCCCHHHHHHHHhcCCCCCcCcCCCCCCH-HHHHHH
Confidence 1235556667788888777777654332 3333333333 34567777766666633444332 22233 333445
Q ss_pred ccchhHHHHHHHH
Q 045511 177 LGSRKLGKAIHAH 189 (209)
Q Consensus 177 ~g~~~~a~~~~~~ 189 (209)
.|+.+-+.-+++.
T Consensus 260 ~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 260 AGQSEIASMLYSR 272 (276)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHhc
Confidence 6777766655543
No 393
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=27.64 E-value=3e+02 Score=23.81 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 133 VTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 133 ~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.--..++.+++...+.+...++++..
T Consensus 650 ~~~~~~l~al~~~~~~~~~~~~l~~~ 675 (780)
T 1z5h_A 650 EDRVRIISAFGKLKSNTDLSTVYGMV 675 (780)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 33445555555555555444444433
No 394
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.59 E-value=1.4e+02 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhh
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLN 59 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~ 59 (209)
.+.++.-|...|+.++|.+-++++..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC
Confidence 35556666666666666666666643
No 395
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=27.40 E-value=81 Score=21.99 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=29.4
Q ss_pred HHHHHHHhccCccHhHHHHHHHHHHhCCC--hhhHHHHHHhc--CCCcHhHHHHHHHHHHh
Q 045511 88 IHAHVIKYGHLHDIFIQNSLLHFYVTVKD--IFSAHQIFNSV--VFPDVVTWTTIISGLSK 144 (209)
Q Consensus 88 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~--~~~~~~~~~~li~~~~~ 144 (209)
.+.+++++|-+-|...-|.||+..++..+ .+..-+...++ .+.++...+-|+..|..
T Consensus 37 ~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~p 97 (186)
T 1oxz_A 37 MLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQ 97 (186)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566666655556666777766665321 12222222222 22355566666766644
No 396
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.27 E-value=2e+02 Score=23.74 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhCCChhhHHHHHHhcCCCcH-------hHHHHHH-HHHHhCCChHHHHHHHhh
Q 045511 101 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV-------VTWTTII-SGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~li-~~~~~~g~~~~a~~~~~~ 157 (209)
..++|.+++.|...+.++.|.++.+...-|.. ..|.-.+ ..+.-.+++.+|.+.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
No 397
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=27.05 E-value=1.4e+02 Score=19.65 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=21.0
Q ss_pred HHHHHHHhhCCC-CCCHHhHHHHHHHhccccchhHHHHHHH
Q 045511 149 KEAIDMFCGIDV-KPNANTLVSVLSACSSLGSRKLGKAIHA 188 (209)
Q Consensus 149 ~~a~~~~~~m~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~ 188 (209)
+.+..+|+.+.. .-...+|.-++..+.+...+-+....++
T Consensus 140 ~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 140 QHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHHhh
Confidence 445566666511 1123566666666666555555544443
No 398
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.87 E-value=1.5e+02 Score=20.16 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=61.2
Q ss_pred ccCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 045511 8 SLKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLE 87 (209)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 87 (209)
.+-+++....+..-....+...|..--..++....+.|. .....+-.++.+.|+.+ .+....+..+......+.|..
T Consensus 45 kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~-~G~~~I~~eL~~KGI~~--~~I~~al~~~~~~de~e~a~~ 121 (177)
T 3e3v_A 45 LDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSD-KGPKVIKLNLSKKGIDD--NIAEDALILYTDKLQVEKGVT 121 (177)
T ss_dssp GTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHTTTCCH--HHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccc-ccHHHHHHHHHHcCCCH--HHHHHHHHhCCchhHHHHHHH
Confidence 333333333333333333443454555666666665554 34566788888899843 334444433222223444555
Q ss_pred HHHHHHHhc-cCccHhHHHHHHHHHHhCC-ChhhHHHHHHhc
Q 045511 88 IHAHVIKYG-HLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSV 127 (209)
Q Consensus 88 ~~~~m~~~g-~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~ 127 (209)
+.+.-.... -.++.....-++..+.+.| ..+.+..+++.+
T Consensus 122 l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 122 LAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 554432221 1223345667778888888 566666777665
No 399
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.78 E-value=2.2e+02 Score=22.03 Aligned_cols=27 Identities=0% Similarity=-0.159 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Q 045511 67 YTFTQALKACSLAHAHQKGLEIHAHVI 93 (209)
Q Consensus 67 ~t~~~ll~~~~~~~~~~~a~~~~~~m~ 93 (209)
.....+|.-|...|+.++|.+.++++.
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 456788999999999999999999885
No 400
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.66 E-value=1.3e+02 Score=20.28 Aligned_cols=92 Identities=4% Similarity=-0.077 Sum_probs=56.1
Q ss_pred HHHhCCChhhHHHHHHhcCC-CcHhHHHHHHHHHHhCCChHHHHHHHhhC---CCCCCHH---hHHHHHHHhccc-cchh
Q 045511 110 FYVTVKDIFSAHQIFNSVVF-PDVVTWTTIISGLSKCGFHKEAIDMFCGI---DVKPNAN---TLVSVLSACSSL-GSRK 181 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~p~~~---t~~~li~~~~~~-g~~~ 181 (209)
..++.|+++....+++.-.. .+...-.+.+...+..|+.+.-.++.+-+ |..||.. -.+.|.-++... .+..
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 44678999998888876432 22111224455556677765433333333 7776654 456666555432 3455
Q ss_pred HHHHHHHHHHHhccCCCchh
Q 045511 182 LGKAIHAHSLRNLNENNIIL 201 (209)
Q Consensus 182 ~a~~~~~~~~~~~~~p~~~~ 201 (209)
...++.+.+.+.|..++...
T Consensus 92 ~~~~iv~~Ll~~Gadin~~d 111 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITALY 111 (186)
T ss_dssp HHHHHHHHHHHTTCCSSSCB
T ss_pred hHHHHHHHHHHCCCCCCccC
Confidence 66788999999999998764
No 401
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.48 E-value=1.5e+02 Score=19.91 Aligned_cols=120 Identities=11% Similarity=0.025 Sum_probs=74.1
Q ss_pred CCcccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHH
Q 045511 29 PQPHILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLL 108 (209)
Q Consensus 29 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 108 (209)
++...=...+.++.+.|+.+.. ..+..+.. .++...-...+.++++.++.+....+.. +.+ .++..+-...+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAA 128 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHH
Confidence 4544445555666666664443 44444443 2666677777778888777654444433 332 46777777888
Q ss_pred HHHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 109 HFYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
.++.+.|+.+....+..-+..++...-...+.++.+.|..+ +...+..
T Consensus 129 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~-~~~~L~~ 176 (201)
T 3ltj_A 129 FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGER-VRAAMEK 176 (201)
T ss_dssp HHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-HHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-HHHHHHH
Confidence 88888888766666666666777777777777777776533 3333333
No 402
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=26.39 E-value=57 Score=15.53 Aligned_cols=22 Identities=5% Similarity=-0.126 Sum_probs=14.2
Q ss_pred HHHHHhccccHHHHHHHHHHHH
Q 045511 72 ALKACSLAHAHQKGLEIHAHVI 93 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~ 93 (209)
++..|.+.|..++|+.+-..++
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4566666777777777655554
No 403
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.22 E-value=76 Score=21.50 Aligned_cols=28 Identities=4% Similarity=0.084 Sum_probs=22.7
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhC
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNC 60 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~ 60 (209)
....+|.-|...|+.++|..-++++...
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 3466888888899999999999988743
No 404
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=25.86 E-value=5.9 Score=28.12 Aligned_cols=137 Identities=9% Similarity=-0.102 Sum_probs=63.2
Q ss_pred HHHHHHhhhCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHHHHhccCcc--------HhHHHHHHHHHHhCCChhh
Q 045511 51 IPLYNKMLNCPSSYNHY---TFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD--------IFIQNSLLHFYVTVKDIFS 119 (209)
Q Consensus 51 ~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--------~~~~~~ll~~~~~~g~~~~ 119 (209)
.++++.+.+.|..|+.. -.+. +...+..|..+. ++.+.+.|..|+ ...-.+.+...+..|+.+-
T Consensus 58 ~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 132 (236)
T 1ikn_D 58 PEIAEALLGAGCDPELRDFRGNTP-LHLACEQGCLAS----VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132 (236)
T ss_dssp HHHHHCCCSCCCCSCCCCTTCCCH-HHHHHHHTCHHH----HHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHHH----HHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHH
Confidence 34566666677655432 2222 333345555543 333444442211 1112334555566777777
Q ss_pred HHHHHHhcCCCcHh---HHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhH--HHHHHHhccccchhHHHHHHHHHHHhc
Q 045511 120 AHQIFNSVVFPDVV---TWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL--VSVLSACSSLGSRKLGKAIHAHSLRNL 194 (209)
Q Consensus 120 a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~~~~~~ 194 (209)
+..+++.-..++.. .-.+-+...+..|+.+-+.-+++. |..|+.... .+-+...+..|+.+ +.+.+.+.|
T Consensus 133 v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~----~~~~Ll~~g 207 (236)
T 1ikn_D 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTR----IQQQLGQLT 207 (236)
T ss_dssp HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHH----HHHHHHTTS
T ss_pred HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchH----HHHHHHHcc
Confidence 77666654332211 112333444556676655555544 555544321 12233334455544 444455566
Q ss_pred cCC
Q 045511 195 NEN 197 (209)
Q Consensus 195 ~~p 197 (209)
..+
T Consensus 208 a~~ 210 (236)
T 1ikn_D 208 LEN 210 (236)
T ss_dssp CGG
T ss_pred hhh
Confidence 544
No 405
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=25.53 E-value=16 Score=26.45 Aligned_cols=80 Identities=18% Similarity=0.129 Sum_probs=58.4
Q ss_pred cchHHHHHHhhhCCC-------CCCHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHhccCc-cHhHHHHHHHH
Q 045511 48 QNAIPLYNKMLNCPS-------SYNHYTFTQALKACSLAH---------AHQKGLEIHAHVIKYGHLH-DIFIQNSLLHF 110 (209)
Q Consensus 48 ~~a~~l~~~m~~~g~-------~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~ 110 (209)
+.|..++.+|--..+ .-...-|..+.++|++.| +++-..++++..++.|++. =+++|+++|+-
T Consensus 148 etAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIIDk 227 (249)
T 3m0z_A 148 ETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDK 227 (249)
T ss_dssp HHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBCT
T ss_pred HHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceeccC
Confidence 446666666643221 135566889999999887 5677888899999999654 35788998887
Q ss_pred HHhCCChhhHHHHHHhc
Q 045511 111 YVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~ 127 (209)
=...-+++++.+++..+
T Consensus 228 ~TG~TrpedV~~ll~~~ 244 (249)
T 3m0z_A 228 ASGNTRPADVRQLLEMT 244 (249)
T ss_dssp TTCCBCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 77777888888888764
No 406
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=25.36 E-value=1.8e+02 Score=20.58 Aligned_cols=123 Identities=11% Similarity=-0.017 Sum_probs=68.9
Q ss_pred cHHHHHHHHHcCC-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHH
Q 045511 33 ILNTLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFY 111 (209)
Q Consensus 33 ~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 111 (209)
+-.-|-.-+.+.| ..+.+..+++.+.+.|+.-|..--...+....+.+. .....+-.++.+.|+.++... ..+.-+
T Consensus 77 S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~-~G~~~I~~eL~~KGI~~~~I~--~al~~~ 153 (221)
T 3d5l_A 77 TESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL-KGPGIIRQHLRQKGIGESDID--DALTQF 153 (221)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHTTCCHHHHH--HHGGGC
T ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHcCCCHHHHH--HHHHhC
Confidence 3334455555555 445677888899999987666555556666544222 235566778888888654321 111111
Q ss_pred HhCCChhhHHHHH----HhcCCCc-HhHHHHHHHHHHhCC-ChHHHHHHHhhC
Q 045511 112 VTVKDIFSAHQIF----NSVVFPD-VVTWTTIISGLSKCG-FHKEAIDMFCGI 158 (209)
Q Consensus 112 ~~~g~~~~a~~~~----~~~~~~~-~~~~~~li~~~~~~g-~~~~a~~~~~~m 158 (209)
......+.|.++. .....++ .....-++..+.+.| .++.+..+++++
T Consensus 154 ~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 154 TPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 1111123333333 3333333 445778888888888 567777777766
No 407
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=25.06 E-value=93 Score=17.05 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCCChhhHH
Q 045511 81 AHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVKDIFSAH 121 (209)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (209)
+.++|..+-+.+...+-. ...+--.-+.++..+|++++|.
T Consensus 21 cH~EA~tIA~~L~~~~~~-eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADWLAQEECM-AECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHHHHTSSTT-HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHccchHhHhh
Confidence 456666666666554421 2222223334556666666654
No 408
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.57 E-value=2.1e+02 Score=21.04 Aligned_cols=123 Identities=11% Similarity=-0.046 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHH--HHHHHHHHhccccHHHHHHHHHHHHHhccCccHhH--HHHHHH
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYT--FTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFI--QNSLLH 109 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~ 109 (209)
.+.+...+... .......+.+.+.+.|..++... -.+.+...+..|..+.+..+++ ..|..++... -.+.+.
T Consensus 203 ~t~l~~~~~~~-~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~ 278 (337)
T 4g8k_A 203 RNALIHALLSS-DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALL 278 (337)
T ss_dssp CCHHHHHHHHS-CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHH
T ss_pred CcHHHHHHHHc-CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHH
Confidence 34444433332 33444556666677776655422 1233444556777665544432 2344333221 123445
Q ss_pred HHHhCCChhhHHHHHHhcCCCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCH
Q 045511 110 FYVTVKDIFSAHQIFNSVVFPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 164 (209)
Q Consensus 110 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~ 164 (209)
.-++.|+.+-++-+++.=..+|..+ .+..-++.|+.+-+.-+++. |-.||.
T Consensus 279 ~A~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~-GA~~d~ 329 (337)
T 4g8k_A 279 LAVELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLSH-GAKEDF 329 (337)
T ss_dssp HHHHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHHT-TCCC--
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHHC-cCCCCC
Confidence 5567888888877776544444432 34444567777766555544 666654
No 409
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=24.56 E-value=1.5e+02 Score=19.37 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=46.8
Q ss_pred ccCccHhHHHHHHHHHHhCCCh---hhHHHHHHhcC--CC--cHhHHHHHHHHHHhCCChHHHHHHHhhC-CCCCCHH
Q 045511 96 GHLHDIFIQNSLLHFYVTVKDI---FSAHQIFNSVV--FP--DVVTWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN 165 (209)
Q Consensus 96 g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~p~~~ 165 (209)
+-.|++.+-=.+--+++++.+. ..+..++++.- .| .....=-+--|+.+.|+++.|.+..+.+ .+.|+-.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3356666655566677777654 45666666552 23 2334445567889999999999999988 8888754
No 410
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.39 E-value=2e+02 Score=20.66 Aligned_cols=56 Identities=7% Similarity=0.134 Sum_probs=36.0
Q ss_pred hhHHHHHHhcC-----CCcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCHHhHHHHHHHh
Q 045511 118 FSAHQIFNSVV-----FPDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 174 (209)
Q Consensus 118 ~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~~t~~~li~~~ 174 (209)
+++..+|..|. ..-...|-..-..+...|++.+|.++|+. |+.-.+.-...|.+.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~-Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK-GKRMKAKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCccHHHHHHHH
Confidence 45566666662 34566777777888888999999888877 4444433444444443
No 411
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=23.72 E-value=45 Score=21.50 Aligned_cols=113 Identities=11% Similarity=-0.017 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCccchHHHHHHhhhCCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHH
Q 045511 34 LNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNH---YTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLL 108 (209)
Q Consensus 34 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll 108 (209)
+...+...++.|+.+-+..++ +.|..++. .-.+.+ ...+. |+.+ +++.+.+.|..++.. .-.+.+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L-~~A~~-~~~~----~v~~Ll~~g~~~~~~~~~g~t~L 74 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLL----QNNVNVNAQNGFGRTAL-QVMKL-GNPE----IARRLLLRGANPDLKDRTGFAVI 74 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHT----TSCCCTTCCCTTSCCHH-HHCCS-SCHH----HHHHHHHTTCCTTCCCTTSCCHH
T ss_pred HhhHHHHHHHcCCHHHHHHHH----hCCCCccccCccCccHH-HHHHc-CcHH----HHHHHHHcCCCCCCCCCCCCCHH
Confidence 334455556666655555444 44544332 222223 33334 6654 444455556555432 123445
Q ss_pred HHHHhCCChhhHHHHHHhcCCC---cHhHHHHHHHHHHhCCChHHHHHHHhh
Q 045511 109 HFYVTVKDIFSAHQIFNSVVFP---DVVTWTTIISGLSKCGFHKEAIDMFCG 157 (209)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 157 (209)
...++.|+.+-+..+++.-..+ |..-.+ .+...++.|+.+-+..+++.
T Consensus 75 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 125 (162)
T 1ihb_A 75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVEFLVKH 125 (162)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 5566678888777777654322 222222 33344567777766666654
No 412
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.71 E-value=1.3e+02 Score=21.33 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=25.6
Q ss_pred hccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC
Q 045511 77 SLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115 (209)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 115 (209)
.+-.+.+.|.-++..|++.| .|.-..=-.++.+.-..|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45579999999999999999 654444344444444344
No 413
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=23.10 E-value=3.3e+02 Score=22.77 Aligned_cols=27 Identities=0% Similarity=0.001 Sum_probs=17.6
Q ss_pred CcccHHHHHHHHHcCCCccchHHHHHH
Q 045511 30 QPHILNTLLKLLTQSSTPQNAIPLYNK 56 (209)
Q Consensus 30 ~~~~~~~li~~~~~~g~~~~a~~l~~~ 56 (209)
|..+|-..+.-|...|......++++.
T Consensus 27 d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 27 DFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp --CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 556777777777777777776666655
No 414
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.65 E-value=63 Score=18.60 Aligned_cols=45 Identities=9% Similarity=0.298 Sum_probs=25.0
Q ss_pred cCCCcchHhHHHHHHHHhhCCCcccHHHHHHHHHcCCCccchHHHHHH
Q 045511 9 LKPTLSFKQLNQIHAQIIKIPQPHILNTLLKLLTQSSTPQNAIPLYNK 56 (209)
Q Consensus 9 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 56 (209)
+.+...++.|.++.+.|+..|+.++-..+.. .+++.+....++.+
T Consensus 5 ~~~q~d~qvfheLkQrFPEvPd~VVsqc~~q---N~~Nl~aC~~~L~q 49 (75)
T 2dae_A 5 SSGQIDFQVLHDLRQKFPEVPEVVVSRCMLQ---NNNNLDACCAVLSQ 49 (75)
T ss_dssp CCCCCCHHHHHHHHHHSSSSCHHHHHHHHTT---TTSCSHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHhcccCcHHHHHHHHHH---hccCHHHHHHHHHH
Confidence 3455567788888888877776543222111 23455555555443
No 415
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=22.33 E-value=2.5e+02 Score=21.07 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCcc-----HhHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHD-----IFIQNS 106 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~ 106 (209)
..|..++.++....-..+|..+.+-|+..| .|..+..-++.. ....+.....+.|..+-...+..+ ...|..
T Consensus 62 G~fe~~l~~l~~~~~~~DA~~L~~AmkG~G--tde~~LieIL~~-Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ 138 (308)
T 2hyv_A 62 GHLETVILGLLKTPAQYDASELKASMKGLG--TDEDSLIEIICS-RTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRK 138 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTSTTC--CCHHHHHHHHHH-CCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHhhcCC--CCHHHHHHHHhc-CCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHH
Confidence 345556666665544556777777776655 565554444422 122344455555554443322211 224666
Q ss_pred HHHHHHhCCC------------hhhHHHHHHhc
Q 045511 107 LLHFYVTVKD------------IFSAHQIFNSV 127 (209)
Q Consensus 107 ll~~~~~~g~------------~~~a~~~~~~~ 127 (209)
++-+++...+ -.+|..+++.+
T Consensus 139 ll~~l~~~~r~~e~~~vd~~~a~~DA~~L~~A~ 171 (308)
T 2hyv_A 139 LMVALAKGRRAEDGSVIDYELIDQDARDLYDAG 171 (308)
T ss_dssp HHHHHHTCCCCCCCSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHccccccccCCCCccHHHHHHHHHHHHh
Confidence 7777776555 45677777765
No 416
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.33 E-value=2.9e+02 Score=22.01 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=30.3
Q ss_pred CCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhccC
Q 045511 44 SSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHA-----HQKGLEIHAHVIKYGHL 98 (209)
Q Consensus 44 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~ 98 (209)
.++.+.|..++.+|.+.|..|-...=..+..+.-..|. +..|...++....-|.+
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 46777777777777777765555444555555544443 23344444444444543
No 417
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=22.10 E-value=79 Score=15.18 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHH
Q 045511 149 KEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAI 186 (209)
Q Consensus 149 ~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~ 186 (209)
++.++-+.+||+.++.. ...+..+ .|+++.|.+.
T Consensus 5 ~~~i~~L~~mGf~~~~a--~~AL~~~--~~n~e~A~~~ 38 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEA--AQALDAA--NGDLDVAASF 38 (40)
T ss_dssp HHHHHHHHHTTCCHHHH--HHHHHHT--TTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHc--CCCHHHHHHH
Confidence 44555555666654333 2234443 4567766654
No 418
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.95 E-value=3e+02 Score=21.76 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=18.0
Q ss_pred cHhHHHHHHHHHHhCCChHHHHHHHhhC
Q 045511 131 DVVTWTTIISGLSKCGFHKEAIDMFCGI 158 (209)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 158 (209)
.+..|+-+-..+.+++++.+|++.|.+.
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 4555666666666677777666666554
No 419
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=21.86 E-value=1.2e+02 Score=21.15 Aligned_cols=113 Identities=14% Similarity=0.047 Sum_probs=58.8
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhccCccHh--HHHHHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCC
Q 045511 72 ALKACSLAHAHQKGLEIHAHVIKYGHLHDIF--IQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCG 146 (209)
Q Consensus 72 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 146 (209)
.+...+..|+.+. ++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-.. .|..-++.|.. -+..|
T Consensus 40 ~L~~A~~~g~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~-A~~~~ 114 (239)
T 1ycs_B 40 LLLDSSLEGEFDL----VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC-AASCN 114 (239)
T ss_dssp HHHHHHHHTCHHH----HHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHH-HHHTT
T ss_pred HHHHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH-HHHcC
Confidence 3344456666643 44445555444432 123455566677888888777775322 23333334433 34677
Q ss_pred ChHHHHHHHhhCCCCCCHHh---HHHHHHHh--ccccchhHHHHHHHHH
Q 045511 147 FHKEAIDMFCGIDVKPNANT---LVSVLSAC--SSLGSRKLGKAIHAHS 190 (209)
Q Consensus 147 ~~~~a~~~~~~m~~~p~~~t---~~~li~~~--~~~g~~~~a~~~~~~~ 190 (209)
+.+-+..+++. |..++... ..+.+..+ ...|..+-+.-+++.-
T Consensus 115 ~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 115 NVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp CHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 77766555554 44444322 10223344 4667777666655543
No 420
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.85 E-value=1.9e+02 Score=20.86 Aligned_cols=86 Identities=8% Similarity=-0.094 Sum_probs=36.3
Q ss_pred HHHHHHHhCCChhhHHHHHHhcCC---CcHhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCH--HhHHHHHHHhccccch
Q 045511 106 SLLHFYVTVKDIFSAHQIFNSVVF---PDVVTWTTIISGLSKCGFHKEAIDMFCGIDVKPNA--NTLVSVLSACSSLGSR 180 (209)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~p~~--~t~~~li~~~~~~g~~ 180 (209)
+.+...++.|+.+-+..+++.-.. .|..-.+. +...+..|+.+-+..+++. |..++. .-.+. +...++.|+.
T Consensus 159 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~g~t~-L~~A~~~~~~ 235 (285)
T 3d9h_A 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP-LYLACENQQRACVKKLLES-GADVNQGKGQDSP-LHAVVRTASE 235 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCH-HHHHHHTTCHHHHHHHHHT-TCCTTCCBTTBCH-HHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCCH-HHHHHHcCCH
Confidence 334444555565555555543322 12112222 2333455666555555444 333321 11222 3333345555
Q ss_pred hHHHHHHHHHHHhccCCC
Q 045511 181 KLGKAIHAHSLRNLNENN 198 (209)
Q Consensus 181 ~~a~~~~~~~~~~~~~p~ 198 (209)
+ +.+.+.+.|..++
T Consensus 236 ~----~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 236 E----LACLLMDFGADTQ 249 (285)
T ss_dssp H----HHHHHHHTTCCTT
T ss_pred H----HHHHHHHCCCCCC
Confidence 4 3334445565554
No 421
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.68 E-value=1e+02 Score=17.64 Aligned_cols=32 Identities=3% Similarity=0.036 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhccCccHhHHHHHHHHHHhC
Q 045511 83 QKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114 (209)
Q Consensus 83 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 114 (209)
++|.+.|..|++..-.....+|...+.-++..
T Consensus 15 eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~D 46 (71)
T 1uzc_A 15 EEAKQAFKELLKEKRVPSNASWEQAMKMIIND 46 (71)
T ss_dssp HHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCcCCCCCHHHHHHHHccC
Confidence 44555555554333222334455444444433
No 422
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=21.53 E-value=32 Score=18.66 Aligned_cols=38 Identities=11% Similarity=-0.099 Sum_probs=22.9
Q ss_pred ccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhCC
Q 045511 78 LAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTVK 115 (209)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 115 (209)
+..-.++...+.++=++.|-.+....+++..+.+...|
T Consensus 8 s~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 8 SDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp CCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 33344556666666666666666666666666665554
No 423
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=21.50 E-value=2.7e+02 Score=21.04 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHV 92 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 92 (209)
..|..++.++.....-.+|..+.+-|+..| .|..++.-++... ...++..+.+.|..+
T Consensus 74 G~f~~ll~~l~~~~~~~DA~~L~~A~kg~G--tde~~lieIL~~R-s~~ql~~I~~aY~~~ 131 (320)
T 1yii_A 74 GKFETLMVSLMRPARIFDAHALKHAIKGAG--TNEKVLTEILASR-TPAEVQNIKQVYMQE 131 (320)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHSSSS--CCHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHccChHHHHHHHHHHHhccCC--CchHHHhHHHhcC-CHHHHHHHHHHHHHh
Confidence 356667777776666667788887775544 4665554443331 222334444444443
No 424
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=21.28 E-value=18 Score=26.61 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=57.3
Q ss_pred cchHHHHHHhhhCCC-------CCCHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHhccCc-cHhHHHHHHHH
Q 045511 48 QNAIPLYNKMLNCPS-------SYNHYTFTQALKACSLAH---------AHQKGLEIHAHVIKYGHLH-DIFIQNSLLHF 110 (209)
Q Consensus 48 ~~a~~l~~~m~~~g~-------~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~ 110 (209)
+.|..++.+|--..+ .-...-|..+.++|++.| +++-..++++..++.|++. =+++|+++|+-
T Consensus 171 etAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk 250 (275)
T 3m6y_A 171 KTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDK 250 (275)
T ss_dssp HHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBCT
T ss_pred HHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceeccC
Confidence 346666666643221 135566888999998886 4567888888888988653 35688888877
Q ss_pred HHhCCChhhHHHHHHhc
Q 045511 111 YVTVKDIFSAHQIFNSV 127 (209)
Q Consensus 111 ~~~~g~~~~a~~~~~~~ 127 (209)
=...-+++++.+++..+
T Consensus 251 ~TG~TrpedV~~ll~~~ 267 (275)
T 3m6y_A 251 ETGNTKVEAVRELLAVV 267 (275)
T ss_dssp TTCCBCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 77777888888888765
No 425
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.04 E-value=1.2e+02 Score=17.94 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=13.8
Q ss_pred cchHHHHHHhhhC-CCCCCHHHHHHHHHHHhccccH
Q 045511 48 QNAIPLYNKMLNC-PSSYNHYTFTQALKACSLAHAH 82 (209)
Q Consensus 48 ~~a~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~ 82 (209)
+++...|.+|... |+.|+ .||...+...+.-.++
T Consensus 17 eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 17 EARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRY 51 (82)
T ss_dssp HHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGG
T ss_pred HHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCcc
Confidence 3444444444432 23222 4444444444443333
No 426
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A
Probab=20.92 E-value=2.7e+02 Score=20.90 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=59.2
Q ss_pred cHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccH-----h--HHH
Q 045511 33 ILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDI-----F--IQN 105 (209)
Q Consensus 33 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-----~--~~~ 105 (209)
.|..++-++...---.+|..+.+-|+. . .|..++.-++.. ....++..+.+.|..+-...+..+. . .|.
T Consensus 64 ~fe~~l~~l~~~p~~~DA~~L~~A~kg--~-tde~~lieIL~~-Rs~~~l~~I~~aY~~~y~~~Le~di~~e~sg~~~~~ 139 (310)
T 2ii2_A 64 PYEDVMALGWDCNISARVNVIKKAMKN--V-NDFRAIHDVVLI-ATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAAS 139 (310)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHS--S-CCHHHHHHHHHS-CCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSCSHHH
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHHhhC--C-CcHHHHHHHHHc-CCHHHHHHHHHHHHHHHCcCHHHHHHhhcCCchHHH
Confidence 355555555554444456666666665 3 565443333322 1223445555555555433322221 1 456
Q ss_pred HHHHHHHhCCCh------hhHHHHHHhcCC---CcHhHHHHHHHHHHhCC--ChHHHHHHHhhC
Q 045511 106 SLLHFYVTVKDI------FSAHQIFNSVVF---PDVVTWTTIISGLSKCG--FHKEAIDMFCGI 158 (209)
Q Consensus 106 ~ll~~~~~~g~~------~~a~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~a~~~~~~m 158 (209)
.++-+++...+. .+|..+++.+.. .|..++..+ ++... ++....+.|+++
T Consensus 140 ~ll~~ll~~~R~e~~~a~~DA~~L~~A~~~~~Gtde~~~i~I---l~~Rs~~~L~~i~~~Y~~~ 200 (310)
T 2ii2_A 140 YLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRL---IITSTADEYKEINHRFEVL 200 (310)
T ss_dssp HHHHHHHHCCCCCCSCHHHHHHHHHHHHTTSSSCCHHHHHHH---HHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHhhcccCCCHHHHHHH---HHhCCHHHHHHHHHHHHHH
Confidence 666666665443 377888877743 344444333 33332 344555666665
No 427
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=20.89 E-value=1.9e+02 Score=19.25 Aligned_cols=117 Identities=11% Similarity=-0.031 Sum_probs=64.9
Q ss_pred HHHHHHHcCC-CccchHHHHHHhhhCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCccHhHHHHHHHHHHhC
Q 045511 36 TLLKLLTQSS-TPQNAIPLYNKMLNCPSSYNHYTFTQALKACSLAHAHQKGLEIHAHVIKYGHLHDIFIQNSLLHFYVTV 114 (209)
Q Consensus 36 ~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 114 (209)
-|-.-+.+.| ..+....++..+.+.|+.-|..--..++....+.| .....+-.++.+.|+..+.. ...+.-+ ..
T Consensus 36 EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~--~G~~~I~~eL~~KGI~~~~I--~~al~~~-~~ 110 (162)
T 3dfg_A 36 ELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSG--YGPLHIRAELGTHGLDSDAV--SAAMATF-EG 110 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT--CCHHHHHHHHHHTTCCHHHH--HHHHTTC-CS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--ccHHHHHHHHHHcCCCHHHH--HHHHHhC-cH
Confidence 3444445444 33456778888888888655544445555554422 24456777888888755432 2222222 12
Q ss_pred CChhhHHHHHHhc----CCCcHhHHHHHHHHHHhCC-ChHHHHHHHhh
Q 045511 115 KDIFSAHQIFNSV----VFPDVVTWTTIISGLSKCG-FHKEAIDMFCG 157 (209)
Q Consensus 115 g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 157 (209)
...+.|.++...- ...+.....-++..+.+.| .++.+..+++.
T Consensus 111 de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~~ 158 (162)
T 3dfg_A 111 DWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGFDGNSIRLATRF 158 (162)
T ss_dssp CHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHhc
Confidence 2344455554432 1234556677888888888 45566665543
No 428
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=20.73 E-value=2.8e+02 Score=20.96 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHcCCCccchHHHHHHhhhCCCCCCHHHHHHH
Q 045511 32 HILNTLLKLLTQSSTPQNAIPLYNKMLNCPSSYNHYTFTQA 72 (209)
Q Consensus 32 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 72 (209)
..|..++-+++...-..+|..+.+-|+..| .|..++.-+
T Consensus 76 G~f~~ll~~l~~~~~~~dA~~l~~A~kg~G--tde~~lieI 114 (321)
T 1n00_A 76 NDFERLVLLWALDPAERDALLANEATKRWT--SSNQVLMEI 114 (321)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHSSSC--SSCHHHHHH
T ss_pred chHHHHHHHHcCChhHHHHHHHHHHhhccC--CCHHHHHHH
Confidence 456666767776555567777777775433 555544443
No 429
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=20.52 E-value=1.7e+02 Score=18.36 Aligned_cols=40 Identities=5% Similarity=0.087 Sum_probs=23.9
Q ss_pred CCChHHHHHHHhhCCCCCCHHhHHHHHHHhccccchhHHHHHH
Q 045511 145 CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLGSRKLGKAIH 187 (209)
Q Consensus 145 ~g~~~~a~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 187 (209)
..++++-++-+.+||+........+|... .|+++.|.+.+
T Consensus 63 e~~~~~qL~qL~eMGF~d~~~ni~AL~~t---~Gdve~AVe~L 102 (108)
T 2cwb_A 63 GSQWQPQLQQLRDMGIQDDELSLRALQAT---GGDIQAALELI 102 (108)
T ss_dssp CCTTHHHHHHHHTTTCCCHHHHHHHHHHH---TSCHHHHHHHH
T ss_pred ccchHHHHHHHHHcCCCCHHHHHHHHHHh---CCCHHHHHHHH
Confidence 35567777777888874333333333332 37888887764
No 430
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.32 E-value=82 Score=20.08 Aligned_cols=50 Identities=14% Similarity=0.018 Sum_probs=30.4
Q ss_pred CccchHHHHHHhhhCCCC-CCHHHHHHHHHHHh---ccccHHHHHHHHHHHHHhccC
Q 045511 46 TPQNAIPLYNKMLNCPSS-YNHYTFTQALKACS---LAHAHQKGLEIHAHVIKYGHL 98 (209)
Q Consensus 46 ~~~~a~~l~~~m~~~g~~-p~~~t~~~ll~~~~---~~~~~~~a~~~~~~m~~~g~~ 98 (209)
.+++|.+.+..|++.-+. -....||..|..+- ..+++ .+++..+.+.++.
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 556777777777765433 25567888777763 33333 4555566666654
Done!