BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045512
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 115/294 (39%), Gaps = 55/294 (18%)
Query: 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQN 84
K S D Q + L V +++A LP +D+ G+ DPYV+V L K K K N
Sbjct: 7 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 66
Query: 85 PVWNQIFAFS--KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQ 141
PV+N+ F F L + + V D D K D +G F+VP + +
Sbjct: 67 PVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGE-----FKVPMNTVDFGHVTEE 121
Query: 142 WYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKL 201
W L+ A Q L + + + P
Sbjct: 122 WRDLQ--------------------------------SAEKEEQEKLGDICFSLRYVPTA 149
Query: 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPVWNEEHMFV 257
L V + EA++L + G D YVKI L L + ++NP +NE F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 258 ASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHETTKLPDPR 305
PFE + ++VTV D GK++ +G+ F+ + RH + L +PR
Sbjct: 210 V--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPR 261
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 53/232 (22%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L + G D YVK+ L + H +++NPV+NE+ F P
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 78
Query: 262 FEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPXXXXX 317
+ +L +++ V D K +I+G +P+ V H T + W +L
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE-----WRDLQSAEKEEQ 133
Query: 318 XXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAK 377
L C FS P++ G L + IL AK
Sbjct: 134 EK------------LGDIC-------------FSLRYVPTA--------GKLTVVILEAK 160
Query: 378 NLMPMTSKDGKLTDAYC---VAKYGNKWIRTRTILDT--LDPRWNEQYTWEV 424
NL M G L+D Y + + G + + +T + L+P +NE +++EV
Sbjct: 161 NLKKMDV--GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 19/122 (15%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG------IAKHLEKNQNPVWNQIFAFS- 94
+ VN++KARNL MD+ G+ DPYV+V L YK ++N NP++N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 95 -KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVP--------PDSPLAPQWYR 144
E+L+ + +TV DKD + ++D +G++ P V P P+A QW++
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWHQ 135
Query: 145 LE 146
L+
Sbjct: 136 LK 137
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPVWNE 252
++P + V + +A++L + G D YVK+ L + + + R++NP++NE
Sbjct: 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 70
Query: 253 EHMF-VASEPF-EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHETTKLPDPR 305
F + +E E II+TV D+ +++++G+ ++ ++ P +H + PR
Sbjct: 71 SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPR 127
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 29 TASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWN 88
+ SS D V+ + L V V+KA +L D SG DP+ ++LGN + + KN NP WN
Sbjct: 3 SGSSGD-VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61
Query: 89 QIFAFSKERLQSNLVEVTVKDKDIGK-DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147
++F F + + +++EVTV D+D K DF+G+V L + P Y L++
Sbjct: 62 KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKN 113
Query: 148 RKGDKITQGEIML 160
+ ++ +G I L
Sbjct: 114 KDLEQAFKGVIYL 126
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVY 425
+GIL++ +L A +L+ GK +D +C+ + GN ++T T+ L+P WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLA-ADFSGK-SDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK 69
Query: 426 DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL 463
D V+ + VFD +G K +GKV I L ++
Sbjct: 70 DIHDVLEVTVFDE---DGDKPPDF---LGKVAIPLLSI 101
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L+V V +A DL+ ++ D + ++LGN R+ + +++NP WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKD-IH 72
Query: 264 DLIIVTVEDRIGPGKDEILGREFIPVRNV 292
D++ VTV D G + LG+ IP+ ++
Sbjct: 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 23/125 (18%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL--------------GNYKGIAKHLEKNQNPVW 87
L +++++ARNL D +G DP+V+V L YK K+++K+ NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 88 NQIFAF---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWY 143
NQ + S E+L +EVTV D D +DF+G V DL H D+ P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL---DN--TPRWY 134
Query: 144 RLEDR 148
L+++
Sbjct: 135 PLKEQ 139
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSH---------VRSVNPVW 250
L + + +A++LVP + D +VK+ L G ++ V S +S+NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 251 NEEHMFVA---SEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
N+ ++ + + + + VTV D ++ LG I + + T PRW+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT-----PRWY 134
Query: 308 NLHK 311
L +
Sbjct: 135 PLKE 138
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 24/133 (18%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAF----SKERLQ 99
+ VV A+ L D +GS DPYV V++G K K + N NPVW + F F S +R++
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIK 80
Query: 100 SNLVEVTVKDKDIG----------KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149
V V +D DI DDF+G+ ++ + S WY L+ R
Sbjct: 81 ---VRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL-------SGEMDVWYNLDKRT 130
Query: 150 GDKITQGEIMLAV 162
G I L +
Sbjct: 131 DKSAVSGAIRLHI 143
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 390 TDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAI 449
+D Y + G RT+TI L+P W E + +E ++ I + V D +DD I
Sbjct: 38 SDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLD-------EDDDI 90
Query: 450 DQRI 453
R+
Sbjct: 91 KSRV 94
Score = 36.2 bits (82), Expect = 0.072, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMF------- 256
+ + V AQ L ++ + D YV +Q+G + T+ + ++NPVW E F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECHNSSD 77
Query: 257 ---VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311
V +D I V+ R D+ LG+ I VR + + W+NL K
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDV-------WYNLDK 128
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 108/255 (42%), Gaps = 50/255 (19%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIFAFSK--E 96
L V +++A +LP D +G DPYV++ L K K K NP++N+ F FS
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 97 RLQSNLVEVTVKDKD-IGKDDFVGRVTFD-LFEVPHRVPPDSPLAPQWYRLEDRKGDKIT 154
L + +V D D + D +G+V D L E+ + PPD PL W + + +K
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDILEGGSEKAD 138
Query: 155 QGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDL 214
GE+ ++ + P L V + +A +L
Sbjct: 139 LGELNFSLC---------------------------------YLPTAGLLTVTIIKASNL 165
Query: 215 VPSEEGRAPDAYVKIQL---GNLVRVTRPS-HVRSVNPVWNEEHMF-VASEPFEDL-IIV 268
+ D YVK L G ++ + S ++NP +NE +F VA E E++ + +
Sbjct: 166 KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 225
Query: 269 TVEDRIGPGKDEILG 283
V D G +E++G
Sbjct: 226 AVVDYDCIGHNEVIG 240
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 108/255 (42%), Gaps = 50/255 (19%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIFAFSK--E 96
L V +++A +LP D +G DPYV++ L K K K NP++N+ F FS
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 97 RLQSNLVEVTVKDKD-IGKDDFVGRVTFD-LFEVPHRVPPDSPLAPQWYRLEDRKGDKIT 154
L + +V D D + D +G+V D L E+ + PPD PL W + + +K
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDILEGGSEKAD 137
Query: 155 QGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDL 214
GE+ ++ + P L V + +A +L
Sbjct: 138 LGELNFSLC---------------------------------YLPTAGLLTVTIIKASNL 164
Query: 215 VPSEEGRAPDAYVKIQL---GNLVRVTRPS-HVRSVNPVWNEEHMF-VASEPFEDL-IIV 268
+ D YVK L G ++ + S ++NP +NE +F VA E E++ + +
Sbjct: 165 KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 224
Query: 269 TVEDRIGPGKDEILG 283
V D G +E++G
Sbjct: 225 AVVDYDCIGHNEVIG 239
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAF--- 93
L +++A+ L MD +G DPYV++ L + K K L +NPVWN+ +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 94 SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDL 125
++E +Q + ++V D+D G ++F+G F L
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL------GNLVRVTRPSHVRSVNPVWNEE---H 254
L+ + A+ L P + D YVK+ L N +R + R NPVWNE H
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR--NPVWNETLQYH 86
Query: 255 MFVASEPFEDLIIVTVEDRIGPGKDEILG 283
+ + ++V D G +E +G
Sbjct: 87 GITEEDMQRKTLRISVCDEDKFGHNEFIG 115
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCV------AKYGNKWIRTRTILDTLDPRWNEQYTW 422
L+ I+ AK L PM S L D Y A NK +RT+T+ +T +P WNE +
Sbjct: 29 LQCTIIRAKGLKPMDS--NGLADPYVKLHLLPGASKSNK-LRTKTLRNTRNPVWNETLQY 85
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAF--- 93
L +++A+ L MD +G DPYV++ L + K K L +NPVWN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 94 SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDL 125
++E +Q + ++V D+D G ++F+G F L
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 182 NISQTNLANTISKVYFSPKLYY------LRVFVFEAQDLVPSEEGRAPDAYVKIQL---- 231
N ++ A T+ + FS L Y L+ + A+ L P + D YVK+ L
Sbjct: 5 NSYDSDQATTLGALEFS--LLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62
Query: 232 --GNLVRVTRPSHVRSVNPVWNEE---HMFVASEPFEDLIIVTVEDRIGPGKDEILG 283
N +R + R NPVWNE H + + ++V D G +E +G
Sbjct: 63 SKSNKLRTKTLRNTR--NPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIG 117
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCV------AKYGNKWIRTRTILDTLDPRWNEQYTW 422
L+ I+ AK L PM S L D Y A NK +RT+T+ +T +P WNE +
Sbjct: 31 LQCTIIRAKGLKPMDSNG--LADPYVKLHLLPGASKSNK-LRTKTLRNTRNPVWNETLQY 87
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V V EA +L + + Y +I +G+ TR ++NP WN F + ++
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPKWNFNCQFFIKDLYQ 447
Query: 264 DLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311
D++ +T+ DR D+ LGR IPV + E +K P R LH+
Sbjct: 448 DVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQE-SKGPMTRRLLLHE 494
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L V+V++A L +G +PY E+ +G+ + ++ NP WN F + L +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 102 LVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLA 139
++ +T+ D+D DDF+GR + ++ P+
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMT 487
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 360 SLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQ 419
S + IG L + ++ A L +GK ++ YC G++ TRTI DTL+P+WN
Sbjct: 380 SQKTSGIGRLMVHVIEATEL-KACKPNGK-SNPYCEISMGSQSYTTRTIQDTLNPKWNFN 437
Query: 420 YTWEVYDPCT-VITIGVFD 437
+ + D V+ + +FD
Sbjct: 438 CQFFIKDLYQDVLCLTLFD 456
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 25 GGDKTASSYDLVEQMH----YLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGI 75
G D T + Q H L V V A+NL MD +G DPYV++KL K
Sbjct: 153 GTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQK 212
Query: 76 AKHLEKNQNPVWNQIFAFS-KERLQSNLVEVTVKDKDI-GKDDFVGRVTFDLFEV 128
K ++ + NP WN+ F F KE + + V + D D+ ++DF+G ++F + E+
Sbjct: 213 TKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 368 ILELGILSAKNLMPMTSKDGKLTDAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTW 422
+L + + AKNL+PM L+D Y K +T+TI +L+P WNE + +
Sbjct: 173 VLIVVVRDAKNLVPMDPNG--LSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRF 230
Query: 423 EV 424
++
Sbjct: 231 QL 232
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPVWNEEHMFVAS 259
L V V +A++LVP + D YVK++L + + + S+NP WNE F
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 260 EPFED 264
E +D
Sbjct: 234 ESDKD 238
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K K ++ + NP WN+ F F K
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 96 ERLQSNLVEVTVKDKDI-GKDDFVGRVTFDLFEV 128
E + + V + D D+ ++DF+G ++F + E+
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR----SVNPVWNEEHMFVAS 259
L V V +A++LVP + D YVK++L + + S+NP WNE F
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 260 EPFED 264
E +D
Sbjct: 93 ESDKD 97
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIF--- 91
Q L V ++KA+ LP D SG+ DP+V++ L +K K KN NP WN+ F
Sbjct: 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83
Query: 92 AFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEV 128
F E++ ++ + V D D ++D +G V+ L +V
Sbjct: 84 GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-IAK---HLEKNQ-NPVWNQIFAFS-- 94
L V V+KAR+LP DVSG DPYV+V L + K I+K H++K N V+N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 95 KERLQSNLVEVTVKDKDIG-KDDFVGRVTF 123
E L+ VE V D + G +++ +GR+
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVL 121
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVR--VTRPSHVRSVNP--VWNEEHMFVAS 259
L V V +A+ L S+ D YVK+ L + + + +HV+ P V+NE +FV
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE--LFVFD 89
Query: 260 EPFEDLIIVTVE----DRIGPGKDEILGR 284
P E L ++VE D ++E++GR
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIGR 118
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K K + NP WN+ F F K
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 96 ERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ + V + D D ++DF+G ++F + E+ ++P A WY+L
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 122
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWE 423
L + + AKNL+PM L+D Y K +T+TI TL+P+WNE +T++
Sbjct: 18 LHVTVRDAKNLIPMDP--NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 75
Query: 424 V 424
+
Sbjct: 76 L 76
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPVWNEEHMF 256
L V V +A++L+P + D YVK++L N + + ++NP WNE F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K K + NP WN+ F F K
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 96 ERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ + V + D D ++DF+G ++F + E+ ++P A WY+L
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 123
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWE 423
L + + AKNL+PM L+D Y K +T+TI TL+P+WNE +T++
Sbjct: 19 LHVTVRDAKNLIPMDP--NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 76
Query: 424 V 424
+
Sbjct: 77 L 77
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPVWNEEHMF 256
L V V +A++L+P + D YVK++L N + + ++NP WNE F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 19/114 (16%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFSKE 96
+ V V +ARNL MD +G DPYV++KL K + ++ NPVWN+ F F+
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFN-- 79
Query: 97 RLQSNLVE----VTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
L+ VE V V D D ++DF+G ++F + E+ + P D WY+L
Sbjct: 80 -LKPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDG-----WYKL 126
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 198 SPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPVWNEE 253
+P + V V EA++L+P + D YVK++L NL + + ++NPVWNE
Sbjct: 16 APTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNET 75
Query: 254 HMF 256
+F
Sbjct: 76 FVF 78
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQ-----NPVWNQIFAFSK- 95
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 79
Query: 96 -ERLQSNLVEVTVKDKD-IGKDDFVGRV 121
E++Q V VTV D D IGK+D +G+V
Sbjct: 80 FEQIQKVQVVVTVLDYDKIGKNDAIGKV 107
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 185 QTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRP 240
Q L + + + P L V + EA++L + G D YVKI L L +
Sbjct: 1 QEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT 60
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ-- 294
++NP +NE F PFE + ++VTV D GK++ +G+ F+ +
Sbjct: 61 IKKNTLNPYYNESFSF--EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL 118
Query: 295 RHETTKLPDPR 305
RH + L +PR
Sbjct: 119 RHWSDMLANPR 129
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQ-----NPVWNQIFAFSK- 95
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 78
Query: 96 -ERLQSNLVEVTVKDKD-IGKDDFVGRV 121
E++Q V VTV D D IGK+D +G+V
Sbjct: 79 FEQIQKVQVVVTVLDYDKIGKNDAIGKV 106
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 188 LANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHV 243
L + + + P L V + EA++L + G D YVKI L L +
Sbjct: 3 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 62
Query: 244 RSVNPVWNEEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHE 297
++NP +NE F PFE + ++VTV D GK++ +G+ F+ + RH
Sbjct: 63 NTLNPYYNESFSF--EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 120
Query: 298 TTKLPDPR 305
+ L +PR
Sbjct: 121 SDMLANPR 128
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 56 DVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI 112
D+ + DPYVE+ + + + +H + NPVWN+ F F + Q N++E+T+ D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 113 GKDDFVGRVTF 123
D+ +G TF
Sbjct: 97 VMDETLGTATF 107
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 56 DVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI 112
D+ + DPYVE+ + + + +H + NPVWN+ F F + Q N++E+T+ D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 113 GKDDFVGRVTF 123
D+ +G TF
Sbjct: 97 VMDETLGTATF 107
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQ-----NPVWNQIFAFSK- 95
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 96 -ERLQSNLVEVTVKDKD-IGKDDFVGRV 121
E++Q V VTV D D IGK+D +G+V
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKV 114
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 188 LANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHV 243
L + + + P L V + EA++L + G D YVKI L L +
Sbjct: 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70
Query: 244 RSVNPVWNEEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHE 297
++NP +NE F PFE + ++VTV D GK++ +G+ F+ + RH
Sbjct: 71 NTLNPYYNESFSF--EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 128
Query: 298 TTKLPDPR 305
+ L +PR
Sbjct: 129 SDMLANPR 136
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 56 DVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI 112
D+ + DPYVE+ + + + +H + NPVWN+ F F + Q N++E+T+ D +
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 113 GKDDFVGRVTF 123
D+ +G TF
Sbjct: 82 VMDETLGTATF 92
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGI-----AKHLEKNQNPVWNQIFAFSKER 97
V V+ L D+ G+ DPYV V L + G+ K ++K+ NP WN+ F
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83
Query: 98 LQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVP 133
Q L+ + + +DDF+G+V L+ +P P
Sbjct: 84 QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENP 119
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL-----GNLVRVTRPSHVRSVNPVWNEEHMFVA 258
+RV V L + A D YV++ L G L V + +S+NP WNEE +F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 259 SEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFN 308
P + ++ V D +D+ LG+ +P+ +P E +L P F
Sbjct: 82 -HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPT--ENPRLERPYTFK 128
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 403 IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462
++T+TI +L+P+WNE+ + V+ + VFD + ++DD +G+V + L
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRL--TRDDF----LGQVDVPLYP 113
Query: 463 LETD--RLYTHY-YPLLVLTPSGLKKNGELHLALRFT 496
L T+ RL Y + VL P K + +L L+ T
Sbjct: 114 LPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMT 150
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQN 84
K S D Q + L V +++A LP +D+ G+ DPYV+V L K K K N
Sbjct: 5 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 64
Query: 85 PVWNQIFAFS--KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQ 141
PV+N+ F F L + + V D D K D +G F+VP + +
Sbjct: 65 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE-----FKVPMNTVDFGHVTEE 119
Query: 142 WYRLE 146
W L+
Sbjct: 120 WRDLQ 124
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L + G D YVK+ L + H +++NPV+NE+ F P
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 76
Query: 262 FEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
+ +L +++ V D K +I+G +P+ V H T + D
Sbjct: 77 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQN 84
K S D Q + L V +++A LP +D+ G+ DPYV+V L K K K N
Sbjct: 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 85 PVWNQIFAFS--KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQ 141
PV+N+ F F L + + V D D K D +G F+VP + +
Sbjct: 90 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE-----FKVPMNTVDFGHVTEE 144
Query: 142 WYRLE 146
W L+
Sbjct: 145 WRDLQ 149
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L + G D YVK+ L + H +++NPV+NE+ F P
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 101
Query: 262 FEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
+ +L +++ V D K +I+G +P+ V H T + D
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQN 84
K S D Q + L V +++A LP +D+ G+ DPYV+V L K K K N
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 85 PVWNQIFAFS--KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQ 141
PV+N+ F F L + + V D D K D +G F+VP + +
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE-----FKVPMNTVDFGHVTEE 136
Query: 142 WYRLE 146
W L+
Sbjct: 137 WRDLQ 141
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L + G D YVK+ L + H +++NPV+NE+ F P
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 93
Query: 262 FEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHET 298
+ +L +++ V D K +I+G +P+ V H T
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL D +G DPYV++KL K K + NP WN+ F F K
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 96 ERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ + V + D D ++DF G ++F + E+ + P A WY+L
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL-XKXP-----ASGWYKL 124
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWE 423
L + + AKNL+P L+D Y K +T+TI TL+P+WNE +T++
Sbjct: 20 LHVTVRDAKNLIPXDP--NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 77
Query: 424 V 424
+
Sbjct: 78 L 78
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPVWNEEHMF 256
L V V +A++L+P + D YVK++L N + + ++NP WNE F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 76
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQN 84
K S D Q + L V +++A LP +D+ G+ DPYV+V L K K K N
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 85 PVWNQIFAFS--KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQ 141
PV+N+ F F L + + V D D K D +G F+VP + +
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE-----FKVPMNTVDFGHVTEE 136
Query: 142 WYRLE 146
W L+
Sbjct: 137 WRDLQ 141
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L + G D YVK+ L + H +++NPV+NE+ F P
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 93
Query: 262 FEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHET 298
+ +L +++ V D K +I+G +P+ V H T
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIA----KHLEKNQNPVWNQIFAFS 94
L V VV +L D+ G+ DPYV++ L + +A K ++K NP WN+ F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 95 KERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVP 133
L+ + + +DDF+G+V L +P P
Sbjct: 83 VNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP 121
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL------GNLVRVTRPSHVRSVNPVWNEEHMFV 257
LRV V DL + A D YVK+ L L V + +++NP WNEE F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 258 ASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLP 302
+ P ++ V D +D+ LG+ +P+ ++P T + P
Sbjct: 83 VN-PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERP 126
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 403 IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462
++T+TI TL+P+WNE++ + V + VFD + ++DD +G+V + LS
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRL--TRDDF----LGQVDVPLSH 115
Query: 463 LETD 466
L T+
Sbjct: 116 LPTE 119
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 40 HYLFVNVVKARNLPVMDVSGSLDPYVEV-----KLGNYKGIAKHLEKNQNPVWNQIFAFS 94
H L V ++ A++LP + +PYV++ + K K ++K P WNQ F +S
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 95 ---KERLQSNLVEVTVKDKDIGKD---DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146
+ + ++E+T+ D+ ++ +F+G + L E+ + D P WY+L+
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEI---LIELETALLDDE---PHWYKLQ 129
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPV 249
K++F + L V + A+DL E+GR + YVKI + + + +++ P
Sbjct: 10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 69
Query: 250 WNEEHMF--VASEPF-EDLIIVTVED--RIGPGKDEILGREFIPVRNVPQRHETTKLPD- 303
WN+ ++ V F E ++ +T+ D R+ + E LG I + ET L D
Sbjct: 70 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-------ETALLDDE 122
Query: 304 PRWFNLH 310
P W+ L
Sbjct: 123 PHWYKLQ 129
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 24/116 (20%)
Query: 373 ILSAKNLMPMTSKDGKLTDAYCVAKY------GNKWIRTRTILDTLDPRWNEQYTWEVYD 426
IL AK+L + +DG+ + Y + NK RT+T+ TL+P+WN+ + +Y
Sbjct: 24 ILGAKDLP--SREDGRPRNPYVKIYFLPDRSDKNK-RRTKTVKKTLEPKWNQTF---IYS 77
Query: 427 PC-------TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
P ++ I ++D V + + +G++ I L T D H+Y L
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDD-EPHWYKL 128
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 40 HYLFVNVVKARNLPVMDVSGSLDPYVEV-----KLGNYKGIAKHLEKNQNPVWNQIFAFS 94
H L V ++ A++LP + +PYV++ + K K ++K P WNQ F +S
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 95 ---KERLQSNLVEVTVKDKDIGKD---DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146
+ + ++E+T+ D+ ++ +F+G + L E+ + D P WY+L+
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEI---LIELETALLDDE---PHWYKLQ 132
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPV 249
K++F + L V + A+DL E+GR + YVKI + + + +++ P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 72
Query: 250 WNEEHMF--VASEPF-EDLIIVTVED--RIGPGKDEILGREFIPVRNVPQRHETTKLPD- 303
WN+ ++ V F E ++ +T+ D R+ + E LG I + ET L D
Sbjct: 73 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-------ETALLDDE 125
Query: 304 PRWFNLH 310
P W+ L
Sbjct: 126 PHWYKLQ 132
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 24/116 (20%)
Query: 373 ILSAKNLMPMTSKDGKLTDAYCVAKY------GNKWIRTRTILDTLDPRWNEQYTWEVYD 426
IL AK+L + +DG+ + Y + NK RT+T+ TL+P+WN+ + +Y
Sbjct: 27 ILGAKDLP--SREDGRPRNPYVKIYFLPDRSDKNK-RRTKTVKKTLEPKWNQTF---IYS 80
Query: 427 PC-------TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
P ++ I ++D V + + +G++ I L T D H+Y L
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDD-EPHWYKL 131
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGI-----AKHLEKNQNPVWNQIFAFSKER 97
V V+ L D+ G+ DPYV V L + GI K ++K+ NP WN+ F
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71
Query: 98 LQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVP 133
+ ++ + + +DDF+G+V L+ +P P
Sbjct: 72 QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENP 107
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 403 IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462
++T+TI +L+P+WNE+ + V I VFD + ++DD +G+V + L
Sbjct: 48 VQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL--TRDDF----LGQVDVPLYP 101
Query: 463 LET-----DRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496
L T +R YT + VL P K + +L L+ T
Sbjct: 102 LPTENPRMERPYT--FKDFVLHPRSHKSRVKGYLRLKMT 138
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL-----GNLVRVTRPSHVRSVNPVWNEEHMFVA 258
+RV V L + A D YV++ L G L V + +S+NP WNEE +F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 259 SEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLP 302
P I+ V D +D+ LG+ +P+ +P + + P
Sbjct: 70 L-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERP 112
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-IAKH----LEKNQNPVWNQIFAFSKE 96
L V +++ +L MD +G DP+V++ L G AKH +K NP +N+ F + +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 97 R--LQSNLVEVTVKDKDIGK-DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI 153
L ++++V D DIGK +D++G + R+ WY K KI
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL-------KHWYECLKNKDKKI 129
Query: 154 TQ 155
+
Sbjct: 130 ER 131
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-IAKH----LEKNQNPVWNQIFAFSKE 96
L V +++ +L MD +G DP+V++ L G AKH +K NP +N+ F + +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 97 R--LQSNLVEVTVKDKDIGK-DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI 153
L ++++V D DIGK +D++G + R+ WY K KI
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL-------KHWYECLKNKDKKI 151
Query: 154 TQ 155
+
Sbjct: 152 ER 153
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-KNQNPVWNQIFAFSKERLQS 100
L V +V A+ L D ++DPYV++ + E P WN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 101 NLVEVTVKDKDIG-KDDFVGRVTFDL--FEVPHRVPPDS 136
L + + DKD+G +DD VG T L V +PP +
Sbjct: 72 EL-KAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA 109
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 44 VNVVKARNLPVMD-VSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIFAFSK---E 96
VN+ +AR LP MD S + DPY+++ + +K + L K +P +++ F F
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85
Query: 97 RLQSNLVEVTVKDKD-IGKDDFVGRV 121
++Q + T+ D +DD +G V
Sbjct: 86 QIQELALHFTILSFDRFSRDDIIGEV 111
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQ-- 99
L V V A N+P G DP V V + K K ++ NPVWN+I F +
Sbjct: 9 LRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 100 -SNLVEVTVKD-KDIGKDDFVGRVTFDL 125
S+ + + VKD + IG++ +G T L
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVAL 95
>pdb|3UOR|A Chain A, The Structure Of The Sugar-Binding Protein Male From The
Phytopathogen Xanthomonas Citri
pdb|3UOR|B Chain B, The Structure Of The Sugar-Binding Protein Male From The
Phytopathogen Xanthomonas Citri
Length = 458
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 380 MPMTSKDGKLTDAYC------VAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITI 433
+PMT+ KL A+ V + GN W+ +LDTL+P ++ DP
Sbjct: 65 IPMTAAHEKLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSKIVDPADYFP- 123
Query: 434 GVFDNCHVNGS 444
GV+D V+G+
Sbjct: 124 GVWDTNLVDGT 134
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 369 LELGILSAKNLMPMTSKDG-KLTDAYC--VAKYGNKWIRTRTILDTLDPRWNEQY 420
L L +L AKNL+ KD +L D + V + T T+ +TLDP+WN+ Y
Sbjct: 5 LRLTVLCAKNLV---KKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHY 56
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 369 LELGILSAKNLMPMTSKDG-KLTDAYC--VAKYGNKWIRTRTILDTLDPRWNEQYTWEVY 425
+ L +L AKNL KD +L D + V + T T+ +TLDP+WN+ Y V
Sbjct: 7 IRLTVLCAKNL---AKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV- 62
Query: 426 DPCTVITIGVFDN 438
ITI V+++
Sbjct: 63 GKTDSITISVWNH 75
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
Length = 618
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 10 LVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL 69
++ TS L + R D A LV Q+ + N++ + P DVSG DP+++V++
Sbjct: 195 VLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRI 254
Query: 70 GNYKGIAKHLEKNQNPVWNQIFA 92
I + + + N I A
Sbjct: 255 LRLLRILGRNDDDSSEAMNDILA 277
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 86 VWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
V NQ+F FSKE L S E+ +K I F+ H V P SP + +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-----------HMVCPPSPSSFTFLNF 360
Query: 146 -EDRKGDKITQG 156
++ D + QG
Sbjct: 361 TQNVFTDSVFQG 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,117,633
Number of Sequences: 62578
Number of extensions: 947603
Number of successful extensions: 2033
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1895
Number of HSP's gapped (non-prelim): 118
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)