Query 045512
Match_columns 782
No_of_seqs 470 out of 3305
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 1.1E-45 2.5E-50 336.8 13.8 156 617-782 1-156 (156)
2 KOG1028 Ca2+-dependent phospho 100.0 6.4E-29 1.4E-33 270.8 25.9 228 23-291 152-393 (421)
3 COG5038 Ca2+-dependent lipid-b 100.0 4.6E-26 1E-30 258.4 34.7 398 35-498 431-842 (1227)
4 KOG1028 Ca2+-dependent phospho 99.9 1.2E-24 2.5E-29 237.5 26.3 215 200-462 165-393 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 1.7E-22 3.6E-27 229.8 30.9 412 39-495 578-1160(1227)
6 KOG1326 Membrane-associated pr 99.9 2.6E-24 5.5E-29 239.5 12.2 287 199-495 610-1021(1105)
7 KOG2059 Ras GTPase-activating 99.9 6.5E-22 1.4E-26 213.4 17.4 252 40-339 5-277 (800)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.3E-21 2.9E-26 177.1 15.9 120 369-491 2-125 (126)
9 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.9E-21 4.1E-26 182.8 16.4 150 203-356 1-150 (150)
10 KOG2059 Ras GTPase-activating 99.9 2.6E-21 5.7E-26 208.7 16.3 247 203-497 6-277 (800)
11 cd08378 C2B_MCTP_PRT_plant C2 99.9 3.2E-21 7E-26 175.1 14.6 121 41-166 1-121 (121)
12 cd04016 C2_Tollip C2 domain pr 99.9 5.7E-21 1.2E-25 171.9 15.4 117 40-164 2-121 (121)
13 cd04016 C2_Tollip C2 domain pr 99.9 5.8E-21 1.3E-25 171.8 14.6 117 367-495 2-121 (121)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 3.7E-20 7.9E-25 170.2 14.1 118 42-162 1-125 (126)
15 cd08682 C2_Rab11-FIP_classI C2 99.8 4.8E-20 1E-24 169.4 13.3 116 369-493 1-125 (126)
16 cd08381 C2B_PI3K_class_II C2 d 99.8 6E-20 1.3E-24 167.0 13.7 111 25-145 2-121 (122)
17 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.1E-19 4.7E-24 168.9 15.5 125 41-166 1-133 (150)
18 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.9E-19 4.1E-24 163.1 14.2 113 42-160 2-125 (126)
19 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.4E-19 5.1E-24 165.0 14.7 121 41-165 1-126 (127)
20 KOG1030 Predicted Ca2+-depende 99.8 6.5E-20 1.4E-24 167.4 10.3 116 365-493 4-120 (168)
21 cd08677 C2A_Synaptotagmin-13 C 99.8 1.7E-19 3.6E-24 159.3 12.5 110 26-145 2-118 (118)
22 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.1E-19 8.9E-24 162.0 15.2 118 41-165 1-120 (121)
23 cd04015 C2_plant_PLD C2 domain 99.8 4.2E-19 9.1E-24 168.8 15.7 122 367-495 7-157 (158)
24 cd04028 C2B_RIM1alpha C2 domai 99.8 4.9E-19 1.1E-23 164.1 15.2 120 21-150 14-141 (146)
25 cd04042 C2A_MCTP_PRT C2 domain 99.8 6E-19 1.3E-23 160.9 15.3 117 369-496 2-120 (121)
26 cd08681 C2_fungal_Inn1p-like C 99.8 3.4E-19 7.3E-24 161.9 13.5 117 40-164 1-118 (118)
27 cd08375 C2_Intersectin C2 doma 99.8 6.2E-19 1.4E-23 163.3 15.4 124 36-164 11-135 (136)
28 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.7E-19 8E-24 162.8 13.5 115 25-146 2-125 (125)
29 KOG1030 Predicted Ca2+-depende 99.8 1.3E-19 2.8E-24 165.4 10.4 95 36-131 2-97 (168)
30 cd08392 C2A_SLP-3 C2 domain fi 99.8 5.1E-19 1.1E-23 161.9 14.1 119 24-146 1-128 (128)
31 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 6.4E-19 1.4E-23 160.0 14.5 118 369-495 2-121 (121)
32 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.8E-18 3.8E-23 156.7 15.4 112 42-164 2-114 (116)
33 cd08394 C2A_Munc13 C2 domain f 99.8 1.2E-18 2.5E-23 155.3 12.9 102 39-148 1-102 (127)
34 cd08375 C2_Intersectin C2 doma 99.8 4.1E-18 8.9E-23 157.8 15.9 118 363-495 11-135 (136)
35 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.4E-18 5.2E-23 157.3 13.9 115 25-146 2-125 (125)
36 cd08400 C2_Ras_p21A1 C2 domain 99.8 7.8E-18 1.7E-22 154.3 16.0 118 367-497 4-124 (126)
37 cd08395 C2C_Munc13 C2 domain t 99.8 2.4E-18 5.3E-23 154.4 12.3 103 41-149 1-114 (120)
38 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 5.2E-18 1.1E-22 157.7 15.1 123 41-164 1-132 (133)
39 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.4E-18 1.4E-22 153.0 15.1 112 368-495 1-114 (116)
40 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 6.8E-18 1.5E-22 153.3 14.9 116 42-163 2-120 (121)
41 cd04024 C2A_Synaptotagmin-like 99.8 6.8E-18 1.5E-22 155.8 15.0 122 40-163 1-127 (128)
42 cd08377 C2C_MCTP_PRT C2 domain 99.8 9.1E-18 2E-22 152.8 15.4 117 367-495 1-118 (119)
43 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.1E-17 2.3E-22 152.4 15.9 117 40-164 1-118 (119)
44 cd08387 C2A_Synaptotagmin-8 C2 99.8 4.9E-18 1.1E-22 155.7 13.7 116 24-146 2-123 (124)
45 cd08681 C2_fungal_Inn1p-like C 99.8 3E-18 6.5E-23 155.7 12.2 115 367-495 1-118 (118)
46 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 7.5E-18 1.6E-22 154.2 14.7 117 41-162 1-122 (123)
47 cd04050 C2B_Synaptotagmin-like 99.8 3.7E-18 7.9E-23 151.4 12.2 102 42-148 2-103 (105)
48 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.1E-18 1.3E-22 155.1 14.1 116 24-146 2-123 (124)
49 cd04031 C2A_RIM1alpha C2 domai 99.8 5.3E-18 1.2E-22 155.8 13.4 115 24-146 2-125 (125)
50 cd08388 C2A_Synaptotagmin-4-11 99.8 6.5E-18 1.4E-22 155.1 13.6 118 24-146 2-127 (128)
51 cd04024 C2A_Synaptotagmin-like 99.8 8.2E-18 1.8E-22 155.3 14.4 121 367-494 1-127 (128)
52 cd04036 C2_cPLA2 C2 domain pre 99.8 8.2E-18 1.8E-22 152.9 14.0 113 42-164 2-117 (119)
53 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.8E-17 3.9E-22 151.9 16.1 118 39-165 3-123 (126)
54 cd08678 C2_C21orf25-like C2 do 99.8 1.1E-17 2.4E-22 153.6 14.7 118 369-497 1-121 (126)
55 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.1E-17 2.3E-22 152.9 14.6 113 40-162 1-119 (121)
56 cd04017 C2D_Ferlin C2 domain f 99.8 1.5E-17 3.2E-22 154.6 15.5 121 40-165 1-132 (135)
57 cd08680 C2_Kibra C2 domain fou 99.8 7.5E-18 1.6E-22 152.7 12.8 113 27-145 3-124 (124)
58 cd04011 C2B_Ferlin C2 domain s 99.8 6.6E-18 1.4E-22 151.4 12.2 106 37-148 1-111 (111)
59 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.2E-17 2.6E-22 153.7 14.2 119 368-495 1-125 (127)
60 cd04015 C2_plant_PLD C2 domain 99.8 2.2E-17 4.9E-22 156.9 15.9 119 40-164 7-157 (158)
61 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.3E-17 2.9E-22 152.3 13.8 105 364-476 12-125 (125)
62 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.4E-17 3.1E-22 152.1 14.0 116 367-495 1-121 (121)
63 cd04028 C2B_RIM1alpha C2 domai 99.8 1.6E-17 3.5E-22 154.0 14.5 104 367-478 29-139 (146)
64 cd08685 C2_RGS-like C2 domain 99.8 8E-18 1.7E-22 152.1 12.1 110 26-145 2-119 (119)
65 cd04010 C2B_RasA3 C2 domain se 99.8 8.6E-18 1.9E-22 157.0 12.7 104 41-150 1-125 (148)
66 cd08677 C2A_Synaptotagmin-13 C 99.7 1.2E-17 2.7E-22 147.4 12.9 102 363-475 10-118 (118)
67 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.3E-17 5.1E-22 150.2 15.0 117 42-163 2-120 (121)
68 cd08381 C2B_PI3K_class_II C2 d 99.7 1.5E-17 3.3E-22 151.2 13.6 99 367-475 13-121 (122)
69 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.9E-17 4.1E-22 152.1 13.7 116 24-146 2-124 (125)
70 cd04030 C2C_KIAA1228 C2 domain 99.7 2.1E-17 4.6E-22 152.3 14.1 115 25-146 3-127 (127)
71 cd08389 C2A_Synaptotagmin-14_1 99.7 2.1E-17 4.6E-22 150.9 13.4 115 24-146 2-123 (124)
72 cd04027 C2B_Munc13 C2 domain s 99.7 3E-17 6.5E-22 150.8 14.4 114 41-162 2-127 (127)
73 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.4E-17 5.1E-22 150.9 13.3 117 368-493 1-122 (123)
74 cd08678 C2_C21orf25-like C2 do 99.7 3.8E-17 8.2E-22 150.1 14.7 116 42-166 1-121 (126)
75 cd04036 C2_cPLA2 C2 domain pre 99.7 3.5E-17 7.5E-22 148.8 14.1 111 369-495 2-117 (119)
76 cd08521 C2A_SLP C2 domain firs 99.7 2.6E-17 5.6E-22 150.8 13.2 114 25-145 1-123 (123)
77 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.4E-17 7.4E-22 152.1 13.9 118 368-495 1-132 (133)
78 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 4.5E-17 9.7E-22 148.3 14.3 116 369-494 2-120 (121)
79 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 3.2E-17 7E-22 156.4 13.6 118 25-147 2-138 (162)
80 cd08393 C2A_SLP-1_2 C2 domain 99.7 3E-17 6.4E-22 150.2 12.7 104 365-476 13-125 (125)
81 cd04046 C2_Calpain C2 domain p 99.7 1.3E-16 2.7E-21 146.4 16.4 118 366-495 2-121 (126)
82 cd04046 C2_Calpain C2 domain p 99.7 1.3E-16 2.7E-21 146.5 16.1 118 40-165 3-122 (126)
83 cd08394 C2A_Munc13 C2 domain f 99.7 3.8E-17 8.2E-22 145.7 12.1 99 367-478 2-102 (127)
84 cd08407 C2B_Synaptotagmin-13 C 99.7 4.4E-17 9.5E-22 150.2 12.7 102 24-127 1-112 (138)
85 cd08688 C2_KIAA0528-like C2 do 99.7 4.5E-17 9.7E-22 145.7 12.1 104 42-147 1-109 (110)
86 cd08378 C2B_MCTP_PRT_plant C2 99.7 8.4E-17 1.8E-21 146.1 13.9 119 203-337 1-119 (121)
87 cd04051 C2_SRC2_like C2 domain 99.7 4.8E-17 1E-21 149.4 12.3 118 41-160 1-125 (125)
88 cd04039 C2_PSD C2 domain prese 99.7 5.8E-17 1.3E-21 143.7 12.2 94 40-133 1-100 (108)
89 cd08373 C2A_Ferlin C2 domain f 99.7 1.4E-16 2.9E-21 146.7 14.8 114 46-167 2-118 (127)
90 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.1E-16 2.4E-21 146.7 13.8 104 364-476 13-123 (124)
91 cd08406 C2B_Synaptotagmin-12 C 99.7 7.4E-17 1.6E-21 148.9 12.6 101 25-127 2-110 (136)
92 cd08382 C2_Smurf-like C2 domai 99.7 1.7E-16 3.7E-21 144.9 14.4 115 42-162 2-122 (123)
93 cd04041 C2A_fungal C2 domain f 99.7 5E-17 1.1E-21 145.6 10.5 99 40-146 1-107 (111)
94 cd08390 C2A_Synaptotagmin-15-1 99.7 1.4E-16 3.1E-21 145.8 13.7 116 25-147 1-123 (123)
95 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.9E-16 4.1E-21 144.9 14.2 106 202-310 15-128 (128)
96 cd08395 C2C_Munc13 C2 domain t 99.7 1E-16 2.2E-21 143.9 12.0 100 368-477 1-112 (120)
97 cd04013 C2_SynGAP_like C2 doma 99.7 2.8E-16 6.1E-21 145.2 14.9 124 366-498 10-141 (146)
98 cd04014 C2_PKC_epsilon C2 doma 99.7 3.3E-16 7.1E-21 145.2 15.5 115 40-166 4-130 (132)
99 cd04039 C2_PSD C2 domain prese 99.7 1.2E-16 2.7E-21 141.6 12.1 95 367-467 1-99 (108)
100 cd04044 C2A_Tricalbin-like C2 99.7 1.4E-16 3E-21 146.2 12.8 118 366-495 1-122 (124)
101 cd08685 C2_RGS-like C2 domain 99.7 1.4E-16 3.1E-21 144.0 12.3 100 367-475 12-119 (119)
102 cd04010 C2B_RasA3 C2 domain se 99.7 1.2E-16 2.6E-21 149.3 11.8 115 368-493 1-147 (148)
103 cd08688 C2_KIAA0528-like C2 do 99.7 1.1E-16 2.4E-21 143.1 11.1 101 369-477 1-109 (110)
104 cd04043 C2_Munc13_fungal C2 do 99.7 4.4E-16 9.5E-21 143.2 15.4 119 40-167 1-123 (126)
105 cd04014 C2_PKC_epsilon C2 doma 99.7 4.1E-16 9E-21 144.5 15.3 117 366-497 3-130 (132)
106 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.9E-16 6.4E-21 143.9 14.0 104 364-476 13-123 (124)
107 cd04027 C2B_Munc13 C2 domain s 99.7 3.8E-16 8.3E-21 143.5 14.4 120 368-493 2-127 (127)
108 cd04044 C2A_Tricalbin-like C2 99.7 4.3E-16 9.4E-21 142.9 13.7 119 39-165 1-123 (124)
109 cd04018 C2C_Ferlin C2 domain t 99.7 3.9E-16 8.5E-21 146.0 13.4 108 42-149 2-127 (151)
110 cd08676 C2A_Munc13-like C2 dom 99.7 3E-16 6.6E-21 146.9 12.1 101 36-145 24-153 (153)
111 cd04030 C2C_KIAA1228 C2 domain 99.7 5E-16 1.1E-20 143.1 13.5 106 364-476 13-127 (127)
112 cd08410 C2B_Synaptotagmin-17 C 99.7 1.4E-16 3E-21 147.9 9.6 119 25-151 1-127 (135)
113 cd04009 C2B_Munc13-like C2 dom 99.7 3.7E-16 8.1E-21 144.8 12.4 106 24-131 2-119 (133)
114 cd04011 C2B_Ferlin C2 domain s 99.7 4.2E-16 9.2E-21 139.7 12.2 107 199-312 1-111 (111)
115 cd08373 C2A_Ferlin C2 domain f 99.7 9.3E-16 2E-20 141.1 14.8 113 373-498 2-118 (127)
116 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.9E-16 4.1E-21 147.5 10.1 119 24-151 1-127 (136)
117 cd04050 C2B_Synaptotagmin-like 99.7 4.1E-16 8.9E-21 138.2 11.7 102 204-312 2-103 (105)
118 cd08408 C2B_Synaptotagmin-14_1 99.7 4.2E-16 9.1E-21 144.6 12.2 118 25-150 2-128 (138)
119 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.2E-16 4.9E-21 146.6 10.0 115 28-151 3-125 (133)
120 cd04031 C2A_RIM1alpha C2 domai 99.7 1.1E-15 2.4E-20 140.4 14.4 103 201-310 15-125 (125)
121 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.2E-15 2.6E-20 140.1 14.0 104 364-476 13-124 (125)
122 cd08382 C2_Smurf-like C2 domai 99.7 9E-16 2E-20 140.1 13.1 117 369-493 2-122 (123)
123 cd08521 C2A_SLP C2 domain firs 99.7 1.2E-15 2.6E-20 139.7 13.8 104 364-475 11-123 (123)
124 cd04032 C2_Perforin C2 domain 99.7 5.5E-16 1.2E-20 140.7 11.4 94 36-130 24-119 (127)
125 cd04038 C2_ArfGAP C2 domain pr 99.7 6.2E-16 1.4E-20 144.1 12.0 92 39-132 1-93 (145)
126 cd08409 C2B_Synaptotagmin-15 C 99.7 9.6E-16 2.1E-20 142.5 12.8 102 25-129 2-111 (137)
127 PF04842 DUF639: Plant protein 99.7 7.4E-16 1.6E-20 169.2 13.9 178 569-776 485-673 (683)
128 cd08405 C2B_Synaptotagmin-7 C2 99.7 1.1E-15 2.5E-20 142.3 13.2 117 25-150 2-126 (136)
129 cd08402 C2B_Synaptotagmin-1 C2 99.7 3.2E-16 6.9E-21 146.0 9.4 117 25-150 2-126 (136)
130 cd04026 C2_PKC_alpha_gamma C2 99.7 1.3E-15 2.9E-20 141.0 13.4 115 25-149 2-123 (131)
131 cd04018 C2C_Ferlin C2 domain t 99.7 9.4E-16 2E-20 143.5 12.4 103 369-477 2-125 (151)
132 cd08690 C2_Freud-1 C2 domain f 99.6 2.8E-15 6.2E-20 140.0 15.2 117 42-165 4-137 (155)
133 cd08389 C2A_Synaptotagmin-14_1 99.6 1.9E-15 4E-20 138.0 13.2 102 365-476 14-123 (124)
134 cd04049 C2_putative_Elicitor-r 99.6 1.5E-15 3.2E-20 139.2 12.6 104 40-148 1-109 (124)
135 cd08675 C2B_RasGAP C2 domain s 99.6 1.2E-15 2.5E-20 141.7 11.9 102 42-149 1-122 (137)
136 cd08690 C2_Freud-1 C2 domain f 99.6 3.6E-15 7.9E-20 139.3 15.2 116 369-495 4-136 (155)
137 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.7E-15 3.8E-20 140.7 13.0 117 25-150 1-125 (134)
138 cd04017 C2D_Ferlin C2 domain f 99.6 2.9E-15 6.3E-20 139.2 14.4 120 203-337 2-131 (135)
139 cd08388 C2A_Synaptotagmin-4-11 99.6 2.3E-15 5E-20 138.2 13.6 106 202-311 16-128 (128)
140 cd08691 C2_NEDL1-like C2 domai 99.6 3.4E-15 7.4E-20 137.6 14.6 117 41-162 2-136 (137)
141 cd08407 C2B_Synaptotagmin-13 C 99.6 1.8E-15 4E-20 139.4 12.7 91 200-291 13-112 (138)
142 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.1E-15 4.6E-20 143.9 13.6 104 364-476 24-137 (162)
143 cd04040 C2D_Tricalbin-like C2 99.6 2.1E-15 4.6E-20 136.3 12.8 112 42-160 1-114 (115)
144 cd04043 C2_Munc13_fungal C2 do 99.6 4.6E-15 1E-19 136.4 14.9 119 203-340 2-123 (126)
145 cd08680 C2_Kibra C2 domain fou 99.6 2.9E-15 6.2E-20 135.8 13.1 106 199-309 11-124 (124)
146 cd04021 C2_E3_ubiquitin_ligase 99.6 4.3E-15 9.3E-20 135.9 14.3 118 41-162 3-124 (125)
147 cd04045 C2C_Tricalbin-like C2 99.6 3.7E-15 8E-20 135.2 13.0 104 40-150 1-106 (120)
148 cd08390 C2A_Synaptotagmin-15-1 99.6 4.6E-15 1E-19 135.8 13.8 105 364-476 11-122 (123)
149 cd04037 C2E_Ferlin C2 domain f 99.6 2.1E-15 4.5E-20 137.8 11.1 90 41-130 1-93 (124)
150 cd00276 C2B_Synaptotagmin C2 d 99.6 1E-15 2.2E-20 142.5 9.1 118 25-151 1-126 (134)
151 cd08692 C2B_Tac2-N C2 domain s 99.6 3.8E-15 8.2E-20 135.0 12.4 98 29-128 5-110 (135)
152 cd04051 C2_SRC2_like C2 domain 99.6 2.5E-15 5.4E-20 138.0 11.5 112 368-491 1-125 (125)
153 cd04038 C2_ArfGAP C2 domain pr 99.6 5E-15 1.1E-19 138.1 13.5 91 366-466 1-92 (145)
154 cd08406 C2B_Synaptotagmin-12 C 99.6 4.2E-15 9.2E-20 137.2 12.6 89 202-291 15-110 (136)
155 cd04049 C2_putative_Elicitor-r 99.6 3.3E-15 7.2E-20 136.9 11.8 102 367-477 1-108 (124)
156 cd04032 C2_Perforin C2 domain 99.6 3.9E-15 8.5E-20 135.1 11.9 94 363-466 24-120 (127)
157 PLN03008 Phospholipase D delta 99.6 3.2E-15 6.9E-20 169.0 13.8 104 389-499 75-180 (868)
158 cd08383 C2A_RasGAP C2 domain ( 99.6 7.7E-15 1.7E-19 133.1 13.6 112 42-164 2-117 (117)
159 cd04045 C2C_Tricalbin-like C2 99.6 4.5E-15 9.7E-20 134.6 11.8 102 367-478 1-104 (120)
160 cd04035 C2A_Rabphilin_Doc2 C2 99.6 8.6E-15 1.9E-19 133.9 13.0 106 25-132 2-115 (123)
161 cd04040 C2D_Tricalbin-like C2 99.6 1E-14 2.2E-19 131.9 13.0 111 369-491 1-114 (115)
162 cd04041 C2A_fungal C2 domain f 99.6 4.3E-15 9.3E-20 133.1 9.9 102 202-312 1-109 (111)
163 cd04026 C2_PKC_alpha_gamma C2 99.6 1.1E-14 2.4E-19 134.9 12.7 102 367-478 13-122 (131)
164 cd00275 C2_PLC_like C2 domain 99.6 2.5E-14 5.4E-19 132.0 14.9 117 40-164 2-127 (128)
165 cd08383 C2A_RasGAP C2 domain ( 99.6 1.6E-14 3.5E-19 131.0 13.3 111 369-495 2-117 (117)
166 cd08675 C2B_RasGAP C2 domain s 99.6 6.7E-15 1.4E-19 136.6 10.7 102 369-480 1-123 (137)
167 cd08692 C2B_Tac2-N C2 domain s 99.6 2E-14 4.3E-19 130.4 12.9 93 199-292 11-110 (135)
168 cd04013 C2_SynGAP_like C2 doma 99.6 3.4E-14 7.4E-19 131.4 14.6 117 39-166 10-140 (146)
169 cd08404 C2B_Synaptotagmin-4 C2 99.6 7.8E-15 1.7E-19 136.6 10.0 102 365-477 13-123 (136)
170 cd08402 C2B_Synaptotagmin-1 C2 99.6 2E-14 4.3E-19 134.0 12.6 105 200-312 13-124 (136)
171 KOG1013 Synaptic vesicle prote 99.6 1.8E-15 3.9E-20 151.0 5.3 227 26-291 81-328 (362)
172 cd04052 C2B_Tricalbin-like C2 99.6 1.7E-14 3.7E-19 129.1 11.2 100 57-165 9-109 (111)
173 cd04021 C2_E3_ubiquitin_ligase 99.6 4.2E-14 9.2E-19 129.4 13.9 115 368-493 3-124 (125)
174 cd08405 C2B_Synaptotagmin-7 C2 99.6 4.1E-14 8.8E-19 131.9 13.9 91 201-292 14-111 (136)
175 cd08410 C2B_Synaptotagmin-17 C 99.6 3.2E-14 7E-19 132.0 12.8 106 200-312 12-124 (135)
176 cd08676 C2A_Munc13-like C2 dom 99.6 2.3E-14 5.1E-19 134.2 11.7 102 197-309 23-153 (153)
177 KOG0696 Serine/threonine prote 99.6 2.6E-15 5.7E-20 153.9 5.2 106 38-149 178-290 (683)
178 cd04048 C2A_Copine C2 domain f 99.5 3.1E-14 6.7E-19 129.5 11.3 98 45-147 5-114 (120)
179 cd04052 C2B_Tricalbin-like C2 99.5 4.2E-14 9E-19 126.6 11.6 98 387-497 9-110 (111)
180 cd04009 C2B_Munc13-like C2 dom 99.5 5.9E-14 1.3E-18 130.0 12.7 92 202-294 16-118 (133)
181 cd08403 C2B_Synaptotagmin-3-5- 99.5 6.8E-14 1.5E-18 130.0 12.7 105 200-312 12-123 (134)
182 cd08408 C2B_Synaptotagmin-14_1 99.5 6.7E-14 1.5E-18 129.9 12.5 104 201-311 14-125 (138)
183 cd08409 C2B_Synaptotagmin-15 C 99.5 1.1E-13 2.3E-18 128.8 13.4 89 202-292 15-110 (137)
184 PLN03008 Phospholipase D delta 99.5 6.8E-14 1.5E-18 158.4 14.0 124 40-169 14-181 (868)
185 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.1E-13 2.4E-18 128.4 12.8 105 200-312 11-122 (133)
186 PLN03200 cellulose synthase-in 99.5 3.3E-14 7.1E-19 175.6 11.5 117 364-496 1977-2100(2102)
187 KOG0696 Serine/threonine prote 99.5 1.4E-14 3E-19 148.6 6.4 104 203-313 181-290 (683)
188 cd08686 C2_ABR C2 domain in th 99.5 1.1E-13 2.3E-18 122.0 10.3 79 42-127 1-92 (118)
189 cd08686 C2_ABR C2 domain in th 99.5 2.5E-13 5.5E-18 119.6 12.6 85 369-462 1-92 (118)
190 cd08691 C2_NEDL1-like C2 domai 99.5 3.4E-13 7.4E-18 124.3 13.6 118 203-335 2-136 (137)
191 cd00275 C2_PLC_like C2 domain 99.5 5E-13 1.1E-17 123.3 14.8 116 368-495 3-127 (128)
192 cd04035 C2A_Rabphilin_Doc2 C2 99.5 4.4E-13 9.6E-18 122.6 14.0 98 366-473 14-121 (123)
193 cd04048 C2A_Copine C2 domain f 99.5 1.5E-13 3.3E-18 125.0 10.6 97 372-477 5-114 (120)
194 cd00276 C2B_Synaptotagmin C2 d 99.5 3.1E-13 6.6E-18 125.8 12.6 103 202-312 14-123 (134)
195 cd04037 C2E_Ferlin C2 domain f 99.5 3E-13 6.6E-18 123.5 11.8 89 204-293 2-92 (124)
196 PLN03200 cellulose synthase-in 99.5 1.8E-13 3.8E-18 169.3 11.5 118 35-162 1975-2097(2102)
197 cd04047 C2B_Copine C2 domain s 99.4 3.6E-13 7.7E-18 120.6 9.3 88 43-131 3-101 (110)
198 KOG1011 Neurotransmitter relea 99.4 2.2E-13 4.9E-18 145.3 8.6 120 41-168 296-427 (1283)
199 PF00168 C2: C2 domain; Inter 99.4 8.9E-13 1.9E-17 111.8 9.9 81 42-122 1-85 (85)
200 cd04047 C2B_Copine C2 domain s 99.4 2.4E-12 5.2E-17 115.2 9.7 92 372-475 5-108 (110)
201 KOG1013 Synaptic vesicle prote 99.3 1.2E-12 2.6E-17 131.0 5.8 228 203-474 94-338 (362)
202 KOG1326 Membrane-associated pr 99.3 5.2E-12 1.1E-16 142.3 10.2 257 37-294 610-969 (1105)
203 PF06398 Pex24p: Integral pero 99.3 1.9E-11 4.2E-16 133.2 13.9 175 563-761 2-194 (359)
204 KOG1011 Neurotransmitter relea 99.2 1.3E-11 2.8E-16 132.0 8.3 124 366-495 294-423 (1283)
205 PF00168 C2: C2 domain; Inter 99.2 3.1E-11 6.7E-16 102.2 8.7 82 204-286 1-85 (85)
206 cd00030 C2 C2 domain. The C2 d 99.2 8E-11 1.7E-15 102.7 11.3 99 42-145 1-102 (102)
207 cd08374 C2F_Ferlin C2 domain s 99.2 8.1E-11 1.8E-15 106.9 10.1 93 369-467 2-125 (133)
208 PLN02270 phospholipase D alpha 99.2 1.4E-10 3E-15 132.0 14.0 126 367-499 8-151 (808)
209 smart00239 C2 Protein kinase C 99.2 1.7E-10 3.7E-15 100.7 11.2 91 42-132 2-96 (101)
210 PLN02223 phosphoinositide phos 99.2 2.8E-10 6E-15 124.6 14.1 116 40-163 409-535 (537)
211 cd00030 C2 C2 domain. The C2 d 99.2 2.3E-10 5E-15 99.7 10.6 98 369-475 1-102 (102)
212 cd08374 C2F_Ferlin C2 domain s 99.1 2.2E-10 4.8E-15 104.1 10.2 91 42-132 2-125 (133)
213 smart00239 C2 Protein kinase C 99.1 4.4E-10 9.6E-15 98.1 10.3 90 369-467 2-96 (101)
214 PF11696 DUF3292: Protein of u 99.1 7.9E-10 1.7E-14 122.2 13.6 220 559-780 83-391 (642)
215 PLN02952 phosphoinositide phos 99.1 1.2E-09 2.6E-14 122.4 14.3 116 40-163 470-597 (599)
216 KOG1327 Copine [Signal transdu 99.1 1.7E-09 3.7E-14 117.3 14.6 249 234-539 41-327 (529)
217 PLN02270 phospholipase D alpha 99.1 1.5E-09 3.2E-14 123.7 14.0 122 40-167 8-150 (808)
218 KOG1328 Synaptic vesicle prote 99.0 5.9E-11 1.3E-15 129.0 1.2 126 37-168 111-304 (1103)
219 PLN02223 phosphoinositide phos 99.0 2.8E-09 6.1E-14 116.9 14.1 119 366-494 408-535 (537)
220 PLN02230 phosphoinositide phos 99.0 3.2E-09 6.9E-14 118.8 12.9 117 40-164 469-597 (598)
221 PLN02952 phosphoinositide phos 99.0 6.1E-09 1.3E-13 116.9 14.6 119 366-496 469-597 (599)
222 PLN02222 phosphoinositide phos 99.0 6.6E-09 1.4E-13 116.2 13.9 116 40-163 452-579 (581)
223 KOG1031 Predicted Ca2+-depende 98.9 4.5E-09 9.8E-14 111.7 10.8 119 367-496 3-136 (1169)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.9E-09 8.5E-14 89.6 8.2 84 42-130 1-88 (109)
225 PLN02228 Phosphoinositide phos 98.9 1.2E-08 2.6E-13 113.9 13.7 118 40-165 431-561 (567)
226 KOG0169 Phosphoinositide-speci 98.9 7.7E-09 1.7E-13 115.4 11.4 118 40-165 616-744 (746)
227 KOG1327 Copine [Signal transdu 98.9 2.5E-08 5.4E-13 108.4 14.3 199 54-294 4-236 (529)
228 cd08689 C2_fungal_Pkc1p C2 dom 98.9 1E-08 2.2E-13 87.1 8.4 85 369-464 1-87 (109)
229 PLN02230 phosphoinositide phos 98.8 2.6E-08 5.5E-13 111.7 13.8 120 366-495 468-597 (598)
230 PLN02222 phosphoinositide phos 98.8 3.3E-08 7.2E-13 110.6 14.4 120 366-495 451-580 (581)
231 KOG0169 Phosphoinositide-speci 98.8 2.1E-08 4.5E-13 112.0 11.9 118 368-495 617-743 (746)
232 PLN02228 Phosphoinositide phos 98.8 4.3E-08 9.2E-13 109.5 14.3 122 366-497 430-562 (567)
233 KOG1031 Predicted Ca2+-depende 98.8 1.4E-08 3.1E-13 108.0 8.9 124 40-165 3-136 (1169)
234 KOG1328 Synaptic vesicle prote 98.8 2.9E-09 6.2E-14 116.1 3.7 101 28-130 937-1049(1103)
235 KOG1264 Phospholipase C [Lipid 98.7 5.8E-08 1.3E-12 107.3 10.3 117 40-165 1065-1189(1267)
236 KOG0905 Phosphoinositide 3-kin 98.6 4.6E-08 9.9E-13 112.2 7.2 119 19-147 1508-1635(1639)
237 PLN02352 phospholipase D epsil 98.6 3.8E-07 8.2E-12 104.2 12.9 119 366-499 9-133 (758)
238 PF12416 DUF3668: Cep120 prote 98.6 3.5E-05 7.5E-10 81.4 25.8 243 42-294 2-295 (340)
239 KOG1264 Phospholipase C [Lipid 98.6 3.3E-07 7.2E-12 101.5 11.0 98 367-477 1065-1171(1267)
240 cd08683 C2_C2cd3 C2 domain fou 98.5 1.3E-07 2.8E-12 82.7 4.5 107 369-475 1-143 (143)
241 PLN02352 phospholipase D epsil 98.3 3.8E-06 8.3E-11 96.2 13.1 118 40-168 10-133 (758)
242 KOG0905 Phosphoinositide 3-kin 98.3 9E-07 1.9E-11 102.0 6.1 104 366-477 1523-1635(1639)
243 PF12416 DUF3668: Cep120 prote 97.8 0.0036 7.7E-08 66.4 22.1 236 204-465 2-295 (340)
244 cd08683 C2_C2cd3 C2 domain fou 97.8 3.4E-05 7.3E-10 67.8 5.0 100 42-145 1-143 (143)
245 cd08684 C2A_Tac2-N C2 domain f 97.6 6.5E-05 1.4E-09 61.1 4.2 88 42-131 1-95 (103)
246 PLN02964 phosphatidylserine de 97.6 9.2E-05 2E-09 84.6 6.4 88 38-132 52-141 (644)
247 PLN02964 phosphatidylserine de 97.5 0.00014 3.1E-09 83.1 6.4 89 364-467 51-141 (644)
248 cd08684 C2A_Tac2-N C2 domain f 97.5 0.00018 3.9E-09 58.7 4.6 95 205-308 2-102 (103)
249 KOG3837 Uncharacterized conser 97.3 0.00016 3.5E-09 75.3 3.8 119 40-165 367-503 (523)
250 KOG3837 Uncharacterized conser 97.3 0.00021 4.6E-09 74.4 4.0 119 365-495 365-502 (523)
251 KOG2060 Rab3 effector RIM1 and 97.0 0.00048 1E-08 71.4 3.3 108 364-479 266-381 (405)
252 KOG2060 Rab3 effector RIM1 and 96.8 0.00097 2.1E-08 69.2 3.3 112 34-150 263-382 (405)
253 KOG1265 Phospholipase C [Lipid 96.5 0.013 2.8E-07 67.1 10.0 110 40-164 703-822 (1189)
254 PF15627 CEP76-C2: CEP76 C2 do 96.0 0.078 1.7E-06 49.4 10.7 125 38-165 7-150 (156)
255 cd08398 C2_PI3K_class_I_alpha 95.6 0.084 1.8E-06 49.9 9.6 101 41-166 9-123 (158)
256 cd08693 C2_PI3K_class_I_beta_d 95.5 0.092 2E-06 50.6 9.6 70 41-112 9-87 (173)
257 cd08398 C2_PI3K_class_I_alpha 95.3 0.18 4E-06 47.7 10.8 88 367-462 8-105 (158)
258 PF08372 PRT_C: Plant phosphor 95.3 0.074 1.6E-06 49.6 7.8 39 582-621 80-118 (156)
259 PF15627 CEP76-C2: CEP76 C2 do 95.2 0.25 5.5E-06 46.1 11.2 96 199-295 6-118 (156)
260 cd08397 C2_PI3K_class_III C2 d 95.2 0.19 4.1E-06 47.7 10.4 94 58-172 27-130 (159)
261 cd08380 C2_PI3K_like C2 domain 95.0 0.24 5.2E-06 47.0 10.7 107 41-169 9-127 (156)
262 PF02453 Reticulon: Reticulon; 94.9 0.0082 1.8E-07 57.9 0.3 62 701-762 90-151 (169)
263 cd08693 C2_PI3K_class_I_beta_d 94.9 0.19 4.1E-06 48.4 9.7 91 367-462 8-119 (173)
264 PF10358 NT-C2: N-terminal C2 94.8 0.7 1.5E-05 43.0 13.2 117 40-166 7-136 (143)
265 KOG1265 Phospholipase C [Lipid 94.6 0.17 3.8E-06 58.3 9.9 85 202-294 703-796 (1189)
266 KOG1452 Predicted Rho GTPase-a 93.9 0.13 2.8E-06 52.3 6.2 114 364-495 48-166 (442)
267 PF10358 NT-C2: N-terminal C2 93.6 0.96 2.1E-05 42.1 11.5 105 201-312 6-121 (143)
268 cd08397 C2_PI3K_class_III C2 d 93.1 0.3 6.6E-06 46.3 7.2 67 391-463 31-107 (159)
269 cd08399 C2_PI3K_class_I_gamma 92.7 0.94 2E-05 43.7 10.0 91 368-462 11-121 (178)
270 cd08399 C2_PI3K_class_I_gamma 92.3 1.5 3.2E-05 42.3 10.7 76 33-112 6-89 (178)
271 cd04012 C2A_PI3K_class_II C2 d 92.0 1 2.2E-05 43.5 9.3 105 41-166 9-136 (171)
272 cd08687 C2_PKN-like C2 domain 91.9 1.6 3.4E-05 36.5 8.8 63 61-128 9-72 (98)
273 cd08380 C2_PI3K_like C2 domain 91.7 1.2 2.6E-05 42.3 9.4 87 204-292 10-107 (156)
274 cd04012 C2A_PI3K_class_II C2 d 91.0 1.1 2.4E-05 43.1 8.6 90 203-292 9-119 (171)
275 PF00792 PI3K_C2: Phosphoinosi 90.8 2.3 5E-05 39.5 10.2 75 75-170 23-106 (142)
276 KOG1452 Predicted Rho GTPase-a 89.7 0.73 1.6E-05 47.1 6.1 77 35-113 46-125 (442)
277 PF00792 PI3K_C2: Phosphoinosi 88.3 3 6.6E-05 38.7 9.0 54 404-463 23-85 (142)
278 KOG1329 Phospholipase D1 [Lipi 88.2 0.2 4.3E-06 58.5 1.1 102 391-498 139-242 (887)
279 smart00142 PI3K_C2 Phosphoinos 88.1 2.8 6E-05 36.4 8.0 71 42-112 13-92 (100)
280 cd08687 C2_PKN-like C2 domain 86.9 6.7 0.00014 33.0 8.8 82 391-495 10-92 (98)
281 PF11696 DUF3292: Protein of u 85.1 2.7 5.8E-05 48.1 7.7 64 703-769 107-171 (642)
282 cd08694 C2_Dock-A C2 domains f 84.2 9.5 0.00021 37.2 10.0 41 73-113 54-96 (196)
283 cd08695 C2_Dock-B C2 domains f 83.3 9.8 0.00021 37.0 9.8 40 73-112 54-95 (189)
284 PF14429 DOCK-C2: C2 domain in 83.0 3.7 8.1E-05 40.1 7.0 58 402-462 60-120 (184)
285 PF11618 DUF3250: Protein of u 82.4 9.2 0.0002 33.6 8.4 94 393-496 2-105 (107)
286 PF15625 CC2D2AN-C2: CC2D2A N- 80.1 36 0.00077 32.6 12.5 87 223-312 37-125 (168)
287 cd08696 C2_Dock-C C2 domains f 79.3 7.2 0.00016 37.7 7.3 62 401-462 54-118 (179)
288 cd08694 C2_Dock-A C2 domains f 78.6 6.8 0.00015 38.2 6.9 59 401-461 53-114 (196)
289 smart00142 PI3K_C2 Phosphoinos 78.3 13 0.00029 32.1 8.1 70 204-274 13-91 (100)
290 cd08695 C2_Dock-B C2 domains f 77.0 6.3 0.00014 38.3 6.2 56 402-461 54-112 (189)
291 PF06398 Pex24p: Integral pero 75.6 6.2 0.00013 43.1 6.6 46 697-742 15-63 (359)
292 PF14429 DOCK-C2: C2 domain in 75.6 7.8 0.00017 37.8 6.6 55 73-127 60-120 (184)
293 PF15625 CC2D2AN-C2: CC2D2A N- 74.3 16 0.00034 35.1 8.2 68 391-465 38-108 (168)
294 PTZ00447 apical membrane antig 73.3 32 0.00068 36.1 10.3 109 366-493 57-170 (508)
295 PF11618 DUF3250: Protein of u 72.5 11 0.00025 33.0 6.1 95 64-164 2-104 (107)
296 KOG3543 Ca2+-dependent activat 72.2 22 0.00047 40.1 9.4 103 367-480 341-444 (1218)
297 PF09726 Macoilin: Transmembra 71.5 9.8 0.00021 45.0 7.2 30 723-752 76-106 (697)
298 cd08697 C2_Dock-D C2 domains f 71.3 16 0.00035 35.4 7.5 62 401-462 56-123 (185)
299 PTZ00447 apical membrane antig 66.2 62 0.0013 34.1 10.6 120 199-342 55-177 (508)
300 cd08679 C2_DOCK180_related C2 65.7 35 0.00076 33.0 8.7 52 74-126 55-114 (178)
301 PF06219 DUF1005: Protein of u 63.4 46 0.00099 36.2 9.4 108 391-498 37-169 (460)
302 PF08151 FerI: FerI (NUC094) d 60.1 17 0.00036 29.3 4.3 48 125-175 3-52 (72)
303 KOG1329 Phospholipase D1 [Lipi 56.7 24 0.00051 42.1 6.5 86 61-152 138-226 (887)
304 cd08679 C2_DOCK180_related C2 56.5 30 0.00066 33.4 6.4 57 405-462 56-115 (178)
305 cd05137 RasGAP_CLA2_BUD2 CLA2/ 53.3 16 0.00034 40.2 4.2 44 452-497 1-45 (395)
306 KOG3543 Ca2+-dependent activat 52.4 1.3E+02 0.0029 34.2 10.9 121 33-164 334-458 (1218)
307 KOG0904 Phosphatidylinositol 3 50.4 75 0.0016 37.9 9.0 104 367-476 343-473 (1076)
308 PF06219 DUF1005: Protein of u 48.5 1.3E+02 0.0029 32.8 9.8 104 61-165 36-167 (460)
309 cd08696 C2_Dock-C C2 domains f 47.9 49 0.0011 32.0 6.2 40 73-112 55-96 (179)
310 PF07162 B9-C2: Ciliary basal 47.9 1.8E+02 0.0039 27.8 10.2 82 204-291 4-103 (168)
311 PF08151 FerI: FerI (NUC094) d 47.8 22 0.00048 28.6 3.2 43 288-340 2-44 (72)
312 cd08697 C2_Dock-D C2 domains f 44.1 64 0.0014 31.4 6.4 39 73-111 57-97 (185)
313 PF07162 B9-C2: Ciliary basal 42.5 2.7E+02 0.0059 26.5 10.5 79 42-126 4-102 (168)
314 PF14909 SPATA6: Spermatogenes 42.4 1.5E+02 0.0032 27.4 7.9 86 42-130 4-101 (140)
315 KOG1792 Reticulon [Intracellul 40.4 86 0.0019 31.7 6.8 39 703-741 132-170 (230)
316 PF00957 Synaptobrevin: Synapt 40.2 99 0.0022 25.9 6.3 35 690-724 36-70 (89)
317 KOG2419 Phosphatidylserine dec 38.5 8.3 0.00018 43.5 -0.7 50 391-440 412-463 (975)
318 PF02453 Reticulon: Reticulon; 38.4 10 0.00023 36.1 0.0 27 711-737 1-27 (169)
319 PF15086 UPF0542: Uncharacteri 35.1 62 0.0013 25.8 3.7 34 583-620 4-39 (74)
320 PF04842 DUF639: Plant protein 35.0 53 0.0012 38.1 4.8 61 697-757 492-555 (683)
321 KOG0904 Phosphatidylinositol 3 34.6 66 0.0014 38.3 5.5 67 41-110 344-421 (1076)
322 PF04281 Tom22: Mitochondrial 34.6 1.8E+02 0.0038 26.8 7.2 57 681-743 51-109 (137)
323 KOG0860 Synaptobrevin/VAMP-lik 33.7 1.3E+02 0.0028 26.7 5.9 36 690-725 62-97 (116)
324 KOG4269 Rac GTPase-activating 33.2 19 0.00041 42.6 0.9 68 38-112 757-829 (1112)
325 PF14924 DUF4497: Protein of u 32.9 1E+02 0.0022 27.2 5.5 63 429-497 29-105 (112)
326 KOG0694 Serine/threonine prote 31.8 18 0.00038 41.8 0.4 49 391-440 29-78 (694)
327 PF10409 PTEN_C2: C2 domain of 31.7 3.9E+02 0.0084 24.1 10.9 89 41-129 5-98 (134)
328 PHA01159 hypothetical protein 31.5 1.4E+02 0.003 26.3 5.7 78 687-777 5-82 (114)
329 KOG4269 Rac GTPase-activating 31.3 21 0.00046 42.1 1.0 91 365-463 757-856 (1112)
330 PF01544 CorA: CorA-like Mg2+ 31.1 1.6E+02 0.0036 30.5 7.7 65 683-753 194-258 (292)
331 KOG4111 Translocase of outer m 30.7 1.3E+02 0.0028 27.2 5.5 46 681-727 42-89 (136)
332 KOG3142 Prenylated rab accepto 30.7 2.6E+02 0.0056 27.2 8.0 74 525-616 18-92 (187)
333 KOG0694 Serine/threonine prote 29.4 43 0.00093 38.8 2.9 94 59-165 26-121 (694)
334 PF14909 SPATA6: Spermatogenes 29.3 2.5E+02 0.0054 25.9 7.2 71 222-294 19-101 (140)
335 PF10779 XhlA: Haemolysin XhlA 29.3 3E+02 0.0064 22.0 7.2 37 683-719 18-54 (71)
336 PHA02650 hypothetical protein; 28.1 1.7E+02 0.0038 23.8 5.2 16 702-717 18-33 (81)
337 COG4920 Predicted membrane pro 27.1 2.7E+02 0.0058 27.3 7.2 24 592-615 6-30 (249)
338 PF08653 DASH_Dam1: DASH compl 27.1 2.5E+02 0.0055 21.6 5.8 49 683-734 3-51 (58)
339 PF08060 NOSIC: NOSIC (NUC001) 25.7 1.3E+02 0.0028 22.5 4.1 30 697-726 9-38 (53)
340 PHA02975 hypothetical protein; 23.8 1.9E+02 0.0042 22.8 4.6 16 702-717 18-33 (69)
341 KOG2419 Phosphatidylserine dec 23.7 23 0.00049 40.2 -0.5 80 37-127 277-361 (975)
342 PHA02844 putative transmembran 22.9 2.1E+02 0.0045 23.1 4.7 17 702-718 18-34 (75)
343 PF10409 PTEN_C2: C2 domain of 21.5 6E+02 0.013 22.8 10.1 88 204-293 6-98 (134)
344 KOG4027 Uncharacterized conser 21.4 3.7E+02 0.008 25.2 6.7 69 389-463 25-111 (187)
345 PF14963 CAML: Calcium signal- 20.6 4.2E+02 0.009 26.9 7.5 34 601-634 170-203 (263)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=1.1e-45 Score=336.83 Aligned_cols=156 Identities=63% Similarity=1.185 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcccccccccccccccccCCCcccccccCCCCCCCChHHHHHHHHHHHHhHhh
Q 045512 617 LPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQ 696 (782)
Q Consensus 617 ~p~~~l~l~~~~~~~~~~~~~~p~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 696 (782)
+|++|++++++++|||++||++|+|+|.++|++++++ +||+|||+|++|++++.+.+++||++||+++++
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~----------~deldEEfD~~ps~~~~~~lr~Rydrlr~va~r 70 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAH----------PDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGR 70 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCC----------cchhhhhhcccccccccHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhccCCCCCCCCCCcchhhhccCCC
Q 045512 697 LQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776 (782)
Q Consensus 697 vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~lr~P~~~~~~~~~~~~~~~r~ps 776 (782)
|||++|++|+++||++|+|+|+||++|++++++|+++|+++|++|+|+++++||+|++|||+||+++|+.++|||+||||
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs 150 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPS 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q 045512 777 KSDMLI 782 (782)
Q Consensus 777 ~~d~~~ 782 (782)
++|+||
T Consensus 151 ~~d~~l 156 (156)
T PF08372_consen 151 RSDSML 156 (156)
T ss_pred chhhcC
Confidence 999986
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-29 Score=270.80 Aligned_cols=228 Identities=30% Similarity=0.417 Sum_probs=195.1
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEec--c
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~--~ 97 (782)
+.|...+++.|+. +...|.|+|++|++|+.+|..|.+||||++++.+ .+.+|++.++|+||+|||+|.|.+. +
T Consensus 152 ~~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~ 229 (421)
T KOG1028|consen 152 AVGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEE 229 (421)
T ss_pred eeeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHH
Confidence 5678999999999 5679999999999999999778999999999985 4789999999999999999999953 4
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEEEEEEcccCCcccccc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIMLAVWIGTQADESFSEA 175 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~~~~d~~~~~~ 175 (782)
+....|.+.|||+|++ ++++||++.++|..+..... ...|.+|....... ...|+|.++++|.
T Consensus 230 l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~---------- 294 (421)
T KOG1028|consen 230 LSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYL---------- 294 (421)
T ss_pred hccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEee----------
Confidence 5678999999999999 99999999999998877542 56899998764221 1227999999886
Q ss_pred ccccccccccccccccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcc
Q 045512 176 WHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVW 250 (782)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~w 250 (782)
|..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+|
T Consensus 295 -----------------------p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~ 350 (421)
T KOG1028|consen 295 -----------------------PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVF 350 (421)
T ss_pred -----------------------cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcc
Confidence 34567999999999999999999999999999853 3566777775 999999
Q ss_pred cceeEEEecC--CCCCeEEEEEEEccCCCCCceeEEEEEeCCC
Q 045512 251 NEEHMFVASE--PFEDLIIVTVEDRIGPGKDEILGREFIPVRN 291 (782)
Q Consensus 251 ne~f~f~v~~--~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 291 (782)
||+|.|.+.. ..+..|.|+|||+|..+.+++||++.+....
T Consensus 351 nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 351 NETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999998763 3345799999999999999999999998774
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.95 E-value=4.6e-26 Score=258.42 Aligned_cols=398 Identities=19% Similarity=0.228 Sum_probs=296.1
Q ss_pred ccccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCC
Q 045512 35 LVEQMHYLFVNVVKARNLPVMD--VSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKD 111 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d 111 (782)
.....|.|.|+|.+|++|...+ .+++.|||+.+.+.+ ...+|++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 3457899999999999999888 689999999999876 467999999999999999999999875 688999999988
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCccccccccccccccccccccc
Q 045512 112 IG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLAN 190 (782)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 190 (782)
.. +|+.+|+..++|..|..+.... .+-+.+.. +.... |+|...+.+.+............ +
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~--~~k~v-GrL~yDl~ffp~~e~k~~~~~s~-------e---- 571 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR--NTKNV-GRLTYDLRFFPVIEDKKELKGSV-------E---- 571 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccccc----cceeeeec--cCccc-eEEEEeeeeecccCCcccccccc-------C----
Confidence 88 9999999999999998865433 23344433 22223 99999996664332211110000 0
Q ss_pred cccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eecccccCCCCCCcccceeEEEecCCCCCeEEEE
Q 045512 191 TISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV-RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVT 269 (782)
Q Consensus 191 ~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~-~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~ 269 (782)
.......|++.+++.++++|..... .....++.+++..+. +.|+..+. +.+|.||+++...+.+.....+.+.
T Consensus 572 ----~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 572 ----PLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ----CcccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 0011236889999999999965332 223334888887755 44566665 9999999999999988888889999
Q ss_pred EEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCC
Q 045512 270 VEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTH 349 (782)
Q Consensus 270 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~ 349 (782)
++|.. ..+.+|+...+|.++.. .......||++..+. |+|.++.++.+.|...+
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~----~t~dt~~~f~~~~~k---------------g~I~~t~~W~Pi~~~~~---- 699 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLID----RTLDTFLVFPLRNPK---------------GRIFITNYWKPIYNAGG---- 699 (1227)
T ss_pred ecccc---cCceeccccccchHhhh----ccccceEEEEcCCCc---------------ceEEEEeccceeecccc----
Confidence 98864 56788998888888873 344567899998764 99999887765442211
Q ss_pred CCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCC
Q 045512 350 FSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDP 427 (782)
Q Consensus 350 ~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~ 427 (782)
.+++.....++|.++|.|..|.+|.+. ...+. |||++|.+++ .++||-....++||.||+....++..+
T Consensus 700 ------~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk 770 (1227)
T COG5038 700 ------SSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK 770 (1227)
T ss_pred ------ccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC
Confidence 112223457889999999999999843 23455 9999999987 568999999999999999999999999
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccC---CcEEEEEEE---cee-eCCCCCccccEEEEEEEEEEC
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET---DRLYTHYYP---LLV-LTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~---L~~-~~~~g~~~~G~i~l~~~~~~~ 498 (782)
.+.+.++++|....+ .|..||.+.|+++++.. +..+...+. ... ...+|.+..|.+.+.++|-+.
T Consensus 771 ~~r~~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 771 NQRLTLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred ccEEeeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999999999876 89999999999999865 111111111 000 111233446889988888554
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=237.51 Aligned_cols=215 Identities=24% Similarity=0.352 Sum_probs=176.9
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecC--CCCCeEEEEEEEcc
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~d 274 (782)
+...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||+|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3446999999999999999777899999999974 5788999986 9999999999999643 34567999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDL 354 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~ 354 (782)
.++++++||++.++|..+.... ....|.+|...... .....|+|.+.+|.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~-----~~~~w~~l~~~~~~--------~~~~~gel~~sL~Y----------------- 293 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLS-----TTLFWKDLQPSSTD--------SEELAGELLLSLCY----------------- 293 (421)
T ss_pred CcccccEEEEEEecCccccccc-----cceeeeccccccCC--------cccccceEEEEEEe-----------------
Confidence 9999999999999998876421 25679999876411 11112899998874
Q ss_pred CccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeC--
Q 045512 355 QPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLDPRWNEQYTWEVYD-- 426 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~~T~~~~~t~nP~wne~~~f~v~~-- 426 (782)
.+..|.|+|.|++|++|..++. .+. ||||++.+- . .+.+|.++++++||+|||.|.|.|..
T Consensus 294 --------~p~~g~ltv~v~kar~L~~~~~---~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~ 362 (421)
T KOG1028|consen 294 --------LPTAGRLTVVVIKARNLKSMDV---GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQ 362 (421)
T ss_pred --------ecCCCeEEEEEEEecCCCcccC---CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHH
Confidence 3445999999999999998764 355 999999882 2 45799999999999999999998873
Q ss_pred C-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 427 P-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 427 ~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
. ...|.|+|||+|.++ .+++||.+.+....
T Consensus 363 l~~~~l~l~V~d~d~~~------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 363 LAEVSLELTVWDHDTLG------SNDLIGRCILGSDS 393 (421)
T ss_pred hheeEEEEEEEEccccc------ccceeeEEEecCCC
Confidence 2 347999999999987 77899999998875
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=229.81 Aligned_cols=412 Identities=22% Similarity=0.244 Sum_probs=286.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCce
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDF 117 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~ 117 (782)
.|.+.+++.++++|.... .....-++++++.++ .+.|+.++.+.+|.||+.+.-.+.+.....+.+.++|.. ..+.
T Consensus 578 ~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~ 654 (1227)
T COG5038 578 TGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV 654 (1227)
T ss_pred cceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence 488999999999998643 222233488999875 667799999999999999999998887888999999976 5678
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc-cCCccccccccccccccccccccccccccc
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT-QADESFSEAWHSDAHNISQTNLANTISKVY 196 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (782)
+|+...+|.++..... ....||++..++ |+|.++....+ .... ...+..+
T Consensus 655 i~~~~~~l~~li~~t~----dt~~~f~~~~~k------g~I~~t~~W~Pi~~~~-------------------~~~s~~~ 705 (1227)
T COG5038 655 IATEGSTLPDLIDRTL----DTFLVFPLRNPK------GRIFITNYWKPIYNAG-------------------GSSSKTV 705 (1227)
T ss_pred eccccccchHhhhccc----cceEEEEcCCCc------ceEEEEeccceeeccc-------------------cccceee
Confidence 9999999998887543 256899997443 88888873321 1111 1112233
Q ss_pred cCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccC
Q 045512 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIG 275 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~ 275 (782)
.....|.++|.|..|.++......+++|||+++.+++ .++||-.... +.||.|++.....+..+ .+++.+++.|+..
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~ 783 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEE 783 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchh
Confidence 4567889999999999999888899999999999987 5677776665 99999999998888765 5668899999999
Q ss_pred CCCCceeEEEEEeCCCcccccCCCC--------C-----CC------------CeeEEccCCCCC---------------
Q 045512 276 PGKDEILGREFIPVRNVPQRHETTK--------L-----PD------------PRWFNLHKPSLS--------------- 315 (782)
Q Consensus 276 ~~~d~~lG~~~i~l~~l~~~~~~~~--------~-----~~------------~~w~~L~~~~~~--------------- 315 (782)
.+.|..+|++.++++++..+.++.. . .. .+.|+.......
T Consensus 784 sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~ 863 (1227)
T COG5038 784 SGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRK 863 (1227)
T ss_pred ccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHH
Confidence 9999999999999999876431100 0 00 001110000000
Q ss_pred ------cccc--------c----------cccc--------------ceecce--------------EEEEEEecc-ccc
Q 045512 316 ------AEEG--------A----------EKKK--------------EKFSSK--------------ILIRFCLEA-GYH 342 (782)
Q Consensus 316 ------~~~g--------~----------~~~~--------------~~~~G~--------------l~l~v~~~~-~~~ 342 (782)
+... + ...+ ....|- +.+.+.++. +|+
T Consensus 864 ~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~ 943 (1227)
T COG5038 864 SEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHP 943 (1227)
T ss_pred hhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCc
Confidence 0000 0 0000 001111 122233333 222
Q ss_pred cCCCCC-------------------------------CCCCC-------C-----------Ccc-------ccc----cc
Q 045512 343 VLDEST-------------------------------HFSSD-------L-----------QPS-------SMS----LR 362 (782)
Q Consensus 343 ~~~~~~-------------------------------~~~~d-------~-----------~~~-------~~~----~~ 362 (782)
..-.+. +..+| + +|. ++. .+
T Consensus 944 ~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~ 1023 (1227)
T COG5038 944 QIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSY 1023 (1227)
T ss_pred eeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEE
Confidence 110000 00000 0 000 000 00
Q ss_pred ------------cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeC-C
Q 045512 363 ------------KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYD-P 427 (782)
Q Consensus 363 ------------~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~-~ 427 (782)
-.+.|.|.|.+..|.||+.. +.+|. ||||++.+.++ .++|+++++++||+|||.++.+|.. .
T Consensus 1024 tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~ 1100 (1227)
T COG5038 1024 TPVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100 (1227)
T ss_pred eecccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccc
Confidence 02589999999999999965 45685 99999999887 7999999999999999999999984 5
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
...++|.|+|||. +++++.||++.|+|+.|..+..++...+|.++. .+ ...|.++....|
T Consensus 1101 ~D~~~i~v~Dwd~------~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~ 1160 (1227)
T COG5038 1101 KDVLTINVNDWDS------GEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNF 1160 (1227)
T ss_pred cceEEEEEeeccc------CCCccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceec
Confidence 6799999999997 348999999999999999999888889987643 11 234777766544
No 6
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.91 E-value=2.6e-24 Score=239.53 Aligned_cols=287 Identities=20% Similarity=0.267 Sum_probs=184.4
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee--eecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCC
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGP 276 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~ 276 (782)
|....++|+|++|.+|...|.+|.+||||++.+|++. -+...+.+ |+||+|++.|.+....+.+..+.++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 5566799999999999999999999999999999876 44556776 99999999999999888888999999999999
Q ss_pred CCCceeEEEEEeCCC-cccccCCCCCCCCeeEEccCCCCC--c-ccccccc---------cceecceEEEEEEecccccc
Q 045512 277 GKDEILGREFIPVRN-VPQRHETTKLPDPRWFNLHKPSLS--A-EEGAEKK---------KEKFSSKILIRFCLEAGYHV 343 (782)
Q Consensus 277 ~~d~~lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~--~-~~g~~~~---------~~~~~G~l~l~v~~~~~~~~ 343 (782)
+.|+.||+..++|.. ...++ ..+....+-|...+...- . ..+...+ .--+.+.. ..+.+.|....
T Consensus 689 ~~d~~iget~iDLEnR~~T~~-~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRH-RARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDI 766 (1105)
T ss_pred cccchhhceehhhhhcccCcC-CcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhh
Confidence 999999999999975 33333 333344443433332100 0 0000000 00000110 11111111000
Q ss_pred -------------------------------CCCCC---CCCCC---------------CCcc-------ccccccCcce
Q 045512 344 -------------------------------LDEST---HFSSD---------------LQPS-------SMSLRKGSIG 367 (782)
Q Consensus 344 -------------------------------~~~~~---~~~~d---------------~~~~-------~~~~~~~~~g 367 (782)
..+.. ...+. +.|. ...-.++...
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~ 846 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY 846 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence 00000 00000 0000 0011235678
Q ss_pred EEEEEEEEeeCCCCCCCCCCCC--C-CcEEEEEECC---EEEeeccccCCC----CCccccEEEEEEe------------
Q 045512 368 ILELGILSAKNLMPMTSKDGKL--T-DAYCVAKYGN---KWIRTRTILDTL----DPRWNEQYTWEVY------------ 425 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~--~-dpyv~v~~~~---~~~~T~~~~~t~----nP~wne~~~f~v~------------ 425 (782)
.++|.|..-.+....|.. +.| . |.||+-.+-+ ++++|.+.++++ |-.|.-.|.|.-.
T Consensus 847 ~lrviiWnt~~v~l~dd~-~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke 925 (1105)
T KOG1326|consen 847 ELRVIIWNTDKVRLNDDE-ITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKE 925 (1105)
T ss_pred eEEEEEeeccceeecCcc-ceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhh
Confidence 999999998888765532 222 3 9999998853 468888888754 6666544444210
Q ss_pred -----C-----CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccccc----------------------CCcEEEEEE
Q 045512 426 -----D-----PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE----------------------TDRLYTHYY 473 (782)
Q Consensus 426 -----~-----~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~----------------------~~~~~~~~~ 473 (782)
+ .-..|.|+|||+|.++ +|++||..+++|+++. ..+.+..|+
T Consensus 926 ~~ws~dete~k~p~rl~iqiWD~d~fs------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWw 999 (1105)
T KOG1326|consen 926 YSWSLDETEFKIPARLIIQIWDNDKFS------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWW 999 (1105)
T ss_pred hccccccccccCchheEEEecccCccC------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccc
Confidence 1 0126999999999998 9999999999999962 233467899
Q ss_pred EceeeCCCCCccccEEEEEEEE
Q 045512 474 PLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 474 ~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|+........--+|++++++.+
T Consensus 1000 P~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1000 PCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred eeeecCCCcceecceeeeehhh
Confidence 9998643222338999988765
No 7
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.88 E-value=6.5e-22 Score=213.36 Aligned_cols=252 Identities=21% Similarity=0.282 Sum_probs=196.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
..|.|+|.+|+||++.+..|.+||||.|.++.+ .++|.++.+++.|-|.|.|+|.+.... ..|.|-|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF-RYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce-eeEEEEEecccccccccc
Confidence 479999999999999999999999999999974 789999999999999999999987753 679999999993399999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCccccccccccccccccccccccccccccC
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFS 198 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (782)
|.+.|.-.+|..... .+.|+.|......+...|+|++++.+......
T Consensus 84 GKvai~re~l~~~~~-----~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~---------------------------- 130 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPG-----KDTWFSLQPVDPDSEVQGKVHLELALTEAIQS---------------------------- 130 (800)
T ss_pred ceeeeeHHHHhhCCC-----CccceeccccCCChhhceeEEEEEEeccccCC----------------------------
Confidence 999999999977542 56899998776544345999999866421110
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe----eeecccccCCCCCCcccceeEEEecCC-------------
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNL----VRVTRPSHVRSVNPVWNEEHMFVASEP------------- 261 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~----~~kT~~~~~~t~nP~wne~f~f~v~~~------------- 261 (782)
.-+...+++++++.+... +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 131 ---~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 ---SGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred ---CcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 013444555556555443 44999999999753 458888887 99999999999987644
Q ss_pred --CCCeEEEEEEE-ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEec
Q 045512 262 --FEDLIIVTVED-RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLE 338 (782)
Q Consensus 262 --~~~~L~i~V~d-~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~ 338 (782)
....|++.+|+ ++....++|+|++.+++..+... .....||-|.+.. +|++...+...|.+.++++..
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~-----s~p~~W~~Lqp~~----~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQK-----SSPAAWYYLQPRP----NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhc-----cCccceEEEecCC----CcccCCCCCCccceeeeEEee
Confidence 12257888888 55566799999999999887632 2367899999875 455445566678888888764
Q ss_pred c
Q 045512 339 A 339 (782)
Q Consensus 339 ~ 339 (782)
.
T Consensus 277 ~ 277 (800)
T KOG2059|consen 277 E 277 (800)
T ss_pred e
Confidence 3
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=1.3e-21 Score=177.08 Aligned_cols=120 Identities=64% Similarity=1.092 Sum_probs=104.7
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 369 LELGILSAKN---LMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 369 l~v~v~~a~~---L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
|+|+|++|+| |..+ +..|+ ||||++++++++.||+++++++||+|||+|.|.+.++...|.|+|||++.++.+
T Consensus 2 L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 7899999999 5544 45577 999999999999999999999999999999999998878999999999875211
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEE
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHL 491 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 491 (782)
+...+|++||++.|+|+++..+..+.+||+|...++++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 12237999999999999999999999999999887777778899886
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=1.9e-21 Score=182.81 Aligned_cols=150 Identities=59% Similarity=1.003 Sum_probs=128.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCcee
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEIL 282 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~l 282 (782)
+|+|+|++|++|+..+..|.+||||++.++++..+|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999865469999999999999877677899999999988899999
Q ss_pred EEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCCCc
Q 045512 283 GREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQP 356 (782)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~ 356 (782)
|++.++|+++.... +.+....+||+|.+.... ..+++..+..|+|++++++.++|++.+++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~---~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRV-DDRPVPSRWFSLERPGGA---MEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccC-CCCccCCceEECcCCCCc---ccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 99999999987542 344568999999976410 01223346689999999999999999999999998865
No 10
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.6e-21 Score=208.73 Aligned_cols=247 Identities=20% Similarity=0.298 Sum_probs=192.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEI 281 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~ 281 (782)
.|.|.|.+|+||+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+...+ ..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999997 5789999997 999999999999996554 45999999999 999999
Q ss_pred eEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCCCcccccc
Q 045512 282 LGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSL 361 (782)
Q Consensus 282 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 361 (782)
||.+.|.=.+|... ...+.|+.|.+-+. +....|++++.+.+..+..
T Consensus 83 IGKvai~re~l~~~-----~~~d~W~~L~~VD~---------dsEVQG~v~l~l~~~e~~~------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMY-----PGKDTWFSLQPVDP---------DSEVQGKVHLELALTEAIQ------------------- 129 (800)
T ss_pred cceeeeeHHHHhhC-----CCCccceeccccCC---------ChhhceeEEEEEEeccccC-------------------
Confidence 99999998888742 25889999998752 4567899999998754321
Q ss_pred ccCcceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCEE----EeeccccCCCCCccccEEEEEEeCC----------
Q 045512 362 RKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKW----IRTRTILDTLDPRWNEQYTWEVYDP---------- 427 (782)
Q Consensus 362 ~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~nP~wne~~~f~v~~~---------- 427 (782)
..-+...++.++++.|.. +++.||||++...+.. .+|+++++|.+|.|+|.|.|.+...
T Consensus 130 ----~~~~~c~~L~~r~~~P~~---~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 130 ----SSGLVCHVLKTRQGLPII---NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFM 202 (800)
T ss_pred ----CCcchhhhhhhcccCcee---CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcC
Confidence 012333455566666532 2234999999986644 5999999999999999999998632
Q ss_pred ------CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCC----ccccEEEEEEEEEE
Q 045512 428 ------CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGL----KKNGELHLALRFTC 497 (782)
Q Consensus 428 ------~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~----~~~G~i~l~~~~~~ 497 (782)
-..|.+.+||+.... ..++|+|++++++..+........||-|.....+.. .--|.+.+.+.+.-
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cccCCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 226899999944322 269999999999999986667789999987644211 12478888877754
No 11
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=3.2e-21 Score=175.09 Aligned_cols=121 Identities=69% Similarity=1.167 Sum_probs=107.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~ 120 (782)
+|.|+|++|+||+.+ .+||||++.+++++.+|+++++|.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999987 7899999999999999999999999999999999988766789999999999888999999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
+.+++.++..+...++...++||+|.+..+.... |+|++++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~-G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVG-GELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccc-eEEEEEEEecC
Confidence 9999999987655555667899999988764444 99999999974
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=5.7e-21 Score=171.90 Aligned_cols=117 Identities=19% Similarity=0.296 Sum_probs=101.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|.|+|++|++|+..+ .|++||||++++++++.+|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 68999999999988777 799999999999999999999876 78999999999998763 46799999999999 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 118 VGRVTFDLF-EVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 118 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
||++.+++. .+..+. ..++||+|.+.++.... |+|+|+++|
T Consensus 80 iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~~~-g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGE-----TLDDWYSLSGKQGEDKE-GMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCC-----CccccEeCcCccCCCCc-eEEEEEEeC
Confidence 999999996 455443 26899999987766554 999999865
No 13
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=5.8e-21 Score=171.82 Aligned_cols=117 Identities=24% Similarity=0.434 Sum_probs=101.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~-t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
|.|+|+|++|++|+..+ .|+ ||||++.++++++||+++++ +.||+|||+|.|.+.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~~----~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG----LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcCC----CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 89999999999987543 356 99999999999999999876 79999999999999876678999999999887
Q ss_pred CCCcCCCccEEEEEecc-cccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 445 KDDAIDQRIGKVRIRLS-TLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.|++. .+..++..+.||+|.... |..+.|+|+|.++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 578888889999998643 44567999999864
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=3.7e-20 Score=170.17 Aligned_cols=118 Identities=28% Similarity=0.480 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEecc-----CCCCeEEEEEEeCCCC-CC
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER-----LQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~-----~~~~~L~v~V~d~d~~-~d 115 (782)
++|+|++|+||+.++..|.+||||+|++++++++|+++++++||+|||+|.|.+.. .....|.|.|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999989999999999999999999999999999999999999866 3567899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEEEE
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIMLAV 162 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~ 162 (782)
++||++.|+|.++..... ....+||+|.+..+.. ...|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~---~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKG---RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCC---CcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999974221 2367999998755431 2249999986
No 15
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=4.8e-20 Score=169.37 Aligned_cols=116 Identities=23% Similarity=0.405 Sum_probs=99.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC------CCceEEEEEEeCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD------PCTVITIGVFDNCHV 441 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~------~~~~l~i~V~d~~~~ 441 (782)
++|+|++|+||++++. .|. ||||+|+++++++||+++++++||+|||.|.|.+.+ ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~---~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGK---SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCC---CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 5799999999997653 356 999999999999999999999999999999999986 356899999999987
Q ss_pred CCCCCCcCCCccEEEEEeccccc--CCcEEEEEEEceeeCCCCCccccEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLE--TDRLYTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+ +|++||++.|+|+++. .+.....||+|.....+..+..|+|+|++
T Consensus 78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 6 7999999999999987 66677899999865443334579999986
No 16
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.83 E-value=6e-20 Score=167.02 Aligned_cols=111 Identities=33% Similarity=0.544 Sum_probs=98.5
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEe---c
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSK---E 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~---~ 96 (782)
|.+.++++|+ .+.|.|+|++|+||+.++ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 5688999999 468999999999999999 89999999999973 478999999999999999999986 3
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
++....|.|+|||++.+ ++++||++.++|.++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 45678999999999998 8999999999999998653 25789987
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.1e-19 Score=168.87 Aligned_cols=125 Identities=27% Similarity=0.458 Sum_probs=107.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
+|+|+|++|+||+.++..|.+||||+++++++..+|+++.+ |.||+|||.|.|.+.++....|.|+|+|++.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 48999999999999999999999999999999999999976 69999999999999776667999999999988 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC-----C-cccceEEEEEEEEcc
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG-----D-KITQGEIMLAVWIGT 166 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~-~~~~G~l~l~~~~~~ 166 (782)
|++.++|.++..+.. ......+||+|.+..+ + ....|+|++.+++..
T Consensus 81 G~v~i~L~~l~~~~~-~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVD-DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCC-CCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 999999999976421 2345789999998754 1 122499999998874
No 18
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.9e-19 Score=163.10 Aligned_cols=113 Identities=24% Similarity=0.319 Sum_probs=97.8
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-----
Q 045512 42 LFVNVVKARN---LPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG----- 113 (782)
Q Consensus 42 L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~----- 113 (782)
|.|+|++|+| |+.+|..|++||||++++++++.+|+++++++||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 7899999999 88899999999999999999999999999999999999999999774 46899999999885
Q ss_pred --CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEE
Q 045512 114 --KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIML 160 (782)
Q Consensus 114 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l 160 (782)
+|++||++.+++..+..+.. ...||+|...++.. ...|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRV-----YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCE-----EeeEEEeEeCCCCCccCCcEEEe
Confidence 89999999999999987542 57899999765222 12377764
No 19
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.4e-19 Score=165.03 Aligned_cols=121 Identities=32% Similarity=0.406 Sum_probs=103.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC---CCCeEEEEEEeCCCC--CC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL---QSNLVEVTVKDKDIG--KD 115 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~---~~~~L~v~V~d~d~~--~d 115 (782)
.|+|+|++|++|+..+..|.+||||++.+++++++|++++++.||+|||.|.|.+... ....|.|.|||++.. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3899999999999999889999999999999999999999999999999999998653 246899999999877 79
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
++||++.+++.++... .....+||+|+.+.......|+|++++|+.
T Consensus 81 ~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999999832 234689999987542222249999999875
No 20
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=6.5e-20 Score=167.43 Aligned_cols=116 Identities=29% Similarity=0.470 Sum_probs=97.1
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNG 443 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~ 443 (782)
..|.|+|.|.+|.||...|. .++ ||||++++|+++.||+++++++||+|||.|+|.+.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~---~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDF---LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeeecc---ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 46999999999999997654 255 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+||+||.++|+|..+...+. .++ |....+.|... |++.++.
T Consensus 80 -----~dD~mG~A~I~l~p~~~~~~--~~~-l~~~~~~gt~~-~~v~~s~ 120 (168)
T KOG1030|consen 80 -----SDDFMGEATIPLKPLLEAQK--MDY-LKLELLTGTAI-GKVLLSR 120 (168)
T ss_pred -----cccccceeeeccHHHHHHhh--hhc-cccccCCCcEe-eEEEecc
Confidence 99999999999999987763 344 44433334333 6555553
No 21
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.81 E-value=1.7e-19 Score=159.30 Aligned_cols=110 Identities=19% Similarity=0.268 Sum_probs=92.9
Q ss_pred CceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeccccCCCCCeeccEEEEEec--cCC
Q 045512 26 GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN----YKGIAKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~i~~t~nP~wne~f~f~~~--~~~ 99 (782)
...+++.|+. ..+.|.|+|++|+||+ . .|.+||||++++.. .+.+|+++++|+||+|||+|.|.+. ++.
T Consensus 2 ~l~fsL~Y~~--~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 2 KLHYSLSYDK--QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred eEEEEEEEcC--cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 4578888888 5679999999999999 3 46799999999964 4779999999999999999999875 456
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 100 SNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 100 ~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
...|.|.|||+|.+ ++++||++.+++.++..... ..+|..|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~-----~~~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLG-----AAQWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCcc-----ccchhcC
Confidence 78899999999999 99999999999998755432 4467543
No 22
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=4.1e-19 Score=162.02 Aligned_cols=118 Identities=34% Similarity=0.491 Sum_probs=104.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
+|+|+|++|++|+..+..|.+||||++++++ ..++|+++.+|.||+|||+|.|.+... ...|.|+|||++.. ++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999899999999999998 578999999999999999999998765 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
|++.+++.++..+.. ...|++|.+.++... .|+|++.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~-~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDED-LGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccC-ceEEEEEEEEC
Confidence 999999999987543 568999987765433 49999998764
No 23
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.81 E-value=4.2e-19 Score=168.77 Aligned_cols=122 Identities=28% Similarity=0.398 Sum_probs=106.3
Q ss_pred eEEEEEEEEeeCCCCCCCC---------------------------CCCCC-CcEEEEEECCEE-EeeccccCCCCCccc
Q 045512 367 GILELGILSAKNLMPMTSK---------------------------DGKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWN 417 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wn 417 (782)
|.|.|+|++|++|++||.. .+.|. ||||+|++++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998731 24566 999999999865 699999999999999
Q ss_pred cEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 418 EQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 418 e~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|.|.|.+.++.+.|.|+|+|++.++ +++||++.|+++++..+...+.||+|.....++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~-------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG-------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC-------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999999888889999999998763 6899999999999998888899999987655555557899999987
No 24
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=4.9e-19 Score=164.14 Aligned_cols=120 Identities=23% Similarity=0.208 Sum_probs=102.2
Q ss_pred ccccCCceeEEEecccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEE
Q 045512 21 LRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFS 94 (782)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~ 94 (782)
.+..|..++++.|. .+.|.|+|++|+||+..+ ..|.+||||++++.+ .++||+++++|+||+|||+|.|.
T Consensus 14 ~~~~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~ 89 (146)
T cd04028 14 SPSMGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD 89 (146)
T ss_pred CCCcceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE
Confidence 33578899999994 478999999999999864 568899999999954 27799999999999999999999
Q ss_pred eccCCCCeEEEEEE-eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 95 KERLQSNLVEVTVK-DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 95 ~~~~~~~~L~v~V~-d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
+. +....|.|+|| |++.+ ++++||++.|+|.++..+.. ...||+|.+...
T Consensus 90 v~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~Wy~L~~~~~ 141 (146)
T cd04028 90 VS-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNL-----VIGWYKLFPTSS 141 (146)
T ss_pred Ec-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCC-----ceeEEecCCccc
Confidence 98 56789999999 57777 89999999999999865432 578999987643
No 25
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=6e-19 Score=160.91 Aligned_cols=117 Identities=27% Similarity=0.377 Sum_probs=103.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|+|+|++|+||+..+. .|. ||||++.+++ ..++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~d~---~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAARDR---GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCcCC---CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 7899999999997653 356 9999999987 678999999999999999999999887789999999999876
Q ss_pred CcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++++++..+.....|++|.+.. +.++.|+|++++++.
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 --TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred --CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999888889999997643 235679999998874
No 26
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=3.4e-19 Score=161.94 Aligned_cols=117 Identities=28% Similarity=0.434 Sum_probs=101.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
|.|+|+|++|++|+..+..+.+||||++++++++.+|+++.+ +.||+|||.|.|.+.......|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 579999999999999998999999999999999999998864 7899999999999887656889999999988789999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+.. ..+|++|.... . . .|+|++++.|
T Consensus 81 G~~~~~l~~~~~~~~-----~~~w~~L~~~~-~-~-~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEGE-----FDDWYELTLKG-R-Y-AGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcCC-----CCCcEEeccCC-c-E-eeEEEEEEEC
Confidence 999999999876432 57999998643 2 3 3999999864
No 27
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=6.2e-19 Score=163.26 Aligned_cols=124 Identities=25% Similarity=0.437 Sum_probs=104.8
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
....|.|+|+|++|++|+..+..|.+||||++.++++.++|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 456789999999999999999899999999999999999999999999999999999999877778999999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++||++.+++.++............+|..+... . .|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~----~-~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEV----P-TGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEeccccc----c-ceeEEEEEEe
Confidence 9999999999999986332222223456666422 1 3999998865
No 28
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.80 E-value=3.7e-19 Score=162.82 Aligned_cols=115 Identities=29% Similarity=0.455 Sum_probs=100.1
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~-- 96 (782)
|.+.+++.|+.. .+.|.|+|++|+||++++.. |.+||||++++.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~--~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPK--LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECC--CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 678999999885 46899999999999999875 8999999999953 3579999999999999999999975
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 34567899999999988 8999999999999997653 257899983
No 29
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.3e-19 Score=165.44 Aligned_cols=95 Identities=37% Similarity=0.505 Sum_probs=89.8
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
....|.|+|+|++|.||..+|..+++||||.+++|+++.||+++++++||+|||.|.|.+.++ ...|.+.|||+|.+ +
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 346789999999999999999889999999999999999999999999999999999999996 68899999999999 9
Q ss_pred CceeEEEEEEccccCCC
Q 045512 115 DDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~ 131 (782)
||+||+|.|++..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 99999999999999865
No 30
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.80 E-value=5.1e-19 Score=161.85 Aligned_cols=119 Identities=25% Similarity=0.314 Sum_probs=102.2
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
+|.+++++.|+... +.|.|+|++|+||+.++.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 1 ~G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~ 78 (128)
T cd08392 1 TGEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78 (128)
T ss_pred CcEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH
Confidence 37789999999854 5999999999999999875 9999999999963 36799999999999999999999754
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||.+.+ ++++||++.|+|.++..... .+....||+|.
T Consensus 79 ~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 79 DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 3467999999999988 99999999999999976532 23478999983
No 31
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=6.4e-19 Score=160.01 Aligned_cols=118 Identities=27% Similarity=0.455 Sum_probs=101.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|.|.|++|+||++++. .+|. ||||+|.++++ ..+|+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6789999999998652 2356 99999999875 58999999999999999999999876679999999999876
Q ss_pred CcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++++++..++..+.||+|......+ +..|+|||+++|
T Consensus 76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 8999999999999998888889999998654433 346999998764
No 32
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.79 E-value=1.8e-18 Score=156.68 Aligned_cols=112 Identities=38% Similarity=0.585 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeEE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVGR 120 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG~ 120 (782)
|+|+|++|+||+..+..|.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. ++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 789999999999999889999999999999999999999999999999999998876678999999999998 9999999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+.+++.++..+.. ...|++|.+. . |+|++.+.+
T Consensus 82 ~~~~l~~l~~~~~-----~~~w~~L~~~-----~-G~~~~~~~~ 114 (116)
T cd08376 82 CEIDLSALPREQT-----HSLELELEDG-----E-GSLLLLLTL 114 (116)
T ss_pred EEEeHHHCCCCCc-----eEEEEEccCC-----C-cEEEEEEEe
Confidence 9999999986542 6799999864 1 899888755
No 33
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=1.2e-18 Score=155.33 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=89.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
|+.|.|+|++|++|+.. +..||||++++++++.+|+++++ .||+|||+|.|.+.+.+ ..|.|+|||++.++|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~---~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP---DKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCC---CCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 57899999999999754 45699999999999999999987 59999999999998764 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
|++.|+|.++..+. ..+.++||+|...
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4677999999854
No 34
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.78 E-value=4.1e-18 Score=157.80 Aligned_cols=118 Identities=29% Similarity=0.463 Sum_probs=100.7
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCH 440 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~ 440 (782)
....|.|+|+|++|+||++++. .|. ||||++.++++.++|++++++.||.|||.|+|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~---~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNS---NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCC---CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 4677999999999999997753 366 9999999999999999999999999999999999875 4689999999998
Q ss_pred CCCCCCCcCCCccEEEEEecccccC-----CcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLET-----DRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++ +|++||++.++++++.. ......|.++. + +..|+|+|++.|
T Consensus 88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 76 78999999999999975 34455677763 2 345999999876
No 35
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=2.4e-18 Score=157.25 Aligned_cols=115 Identities=25% Similarity=0.305 Sum_probs=99.1
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
|.+.+++.|+. ..+.|.|+|++|+||+.++. .|.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDY--KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEEC--CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 67889999976 55699999999999998875 48999999999963 36799999999999999999999754
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 -LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 -~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||++.. ++++||++.+++.++..... ...||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~-----~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQ-----HEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCC-----cccEEECc
Confidence 4467899999999988 99999999999999987643 67899983
No 36
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.77 E-value=7.8e-18 Score=154.28 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=99.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVFDNCHVNG 443 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V~d~~~~~~ 443 (782)
..|+|.|++|+||++. +. ||||+|.+++.. .||++ +++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4699999999999852 34 999999998854 68887 46899999999999876543 57999999999866
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.|+|+++..+...+.||+|......+.+..|+|+|+++|..
T Consensus 76 -----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998765434456799999999853
No 37
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=2.4e-18 Score=154.41 Aligned_cols=103 Identities=28% Similarity=0.387 Sum_probs=88.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEecc---CCCCeEEEEEEeC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGIAKHLEKNQNPVWNQIFAFSKER---LQSNLVEVTVKDK 110 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~i~~t~nP~wne~f~f~~~~---~~~~~L~v~V~d~ 110 (782)
.|+|+|++|++|+..+ .|.+||||+|++-+ ++++|+++.+|+||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 59999999999832 35689999999999999999999863 3456799999999
Q ss_pred CCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 111 DIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 111 d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+.. ++++||++.+++.++..+.. ...|++|+...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~-----~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGS-----CACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCc-----EEEEEECcCcc
Confidence 977 79999999999999987542 67899997643
No 38
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=5.2e-18 Score=157.65 Aligned_cols=123 Identities=28% Similarity=0.411 Sum_probs=103.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
.|+|+|++|++|+.++..|.+||||++++++. +++|+++++|.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 38999999999999998899999999999764 57999999999999999999998653 46899999999998
Q ss_pred -CCceeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPD-SPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
++++||++.+++.++....+.+ .....+||+|++..+.....|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999998764422 34577999999764332224999999865
No 39
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=6.4e-18 Score=153.03 Aligned_cols=112 Identities=28% Similarity=0.467 Sum_probs=99.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~~~ 445 (782)
.++|.|++|+||++.+. .+. ||||+++++++..+|++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD---NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCCCC---CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 37899999999997754 356 9999999999999999999999999999999999875 679999999999876
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|+++..+.....|++|.. ..|+|++++.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 ---KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred ---CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 89999999999999998888999999974 14999998765
No 40
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=6.8e-18 Score=153.29 Aligned_cols=116 Identities=23% Similarity=0.354 Sum_probs=98.2
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 42 LFVNVVKARNLPVMD-VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
|.|+|++|+||+..+ ..|.+||||+|.++++ .++|+++++|+||+|||+|.|.+.+. ...|.|.|||.+.+ ++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4678999999999875 68999999999999999999998763 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
|++.++++++..+.. ...||+|..........|+|++++.
T Consensus 81 G~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYYG-----KDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCCC-----cEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999999986432 5789999875422222499999874
No 41
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=6.8e-18 Score=155.83 Aligned_cols=122 Identities=27% Similarity=0.406 Sum_probs=104.5
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 045512 40 HYLFVNVVKARNLPVMDV--SGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~ 116 (782)
|.|+|+|++|+||+..+. .+.+||||++.+++++++|+++++|.||+|||+|.|.+.......|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999988 88999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--cccceEEEEEEE
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD--KITQGEIMLAVW 163 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~ 163 (782)
+||++.+++.++.... ......+||+|.+.... ....|+|++.+.
T Consensus 81 ~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhccc--ccCccceeEEccCcccCccccccceEEEEEE
Confidence 9999999999997532 12236799999876422 122499999873
No 42
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=9.1e-18 Score=152.84 Aligned_cols=117 Identities=26% Similarity=0.474 Sum_probs=101.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
|.|+|+|++|+||+.++. .+. ||||++++++...+|++++++.||.|||+|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~---~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADI---GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCC---CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 689999999999997653 355 9999999999999999999999999999999999876789999999998765
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++++||++.+++.++..+. ..||+|......+ +..|+|+++++|
T Consensus 75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998765 6899998643322 346999999876
No 43
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=1.1e-17 Score=152.36 Aligned_cols=117 Identities=32% Similarity=0.624 Sum_probs=102.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
|.|.|+|++|++|+..+..+.+||||++++++..++|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999999889999999999999889999999999999999999998764 47899999999987 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+ ..+||+|.+..+.....|+|++++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998653 35899998765443234999998754
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=4.9e-18 Score=155.69 Aligned_cols=116 Identities=32% Similarity=0.455 Sum_probs=101.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
+|.+.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++. ...++|++++++.||+|||+|.|.+.. +
T Consensus 2 ~G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 2 RGELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 467888888877 567999999999999999989999999999995 247899999999999999999998754 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
....|.|+|||++.+ ++++||++.+++.++..+.. ...||+|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~-----~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEK-----LDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCC-----cceEEECc
Confidence 356899999999988 89999999999999987542 67899985
No 45
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=3e-18 Score=155.68 Aligned_cols=115 Identities=28% Similarity=0.505 Sum_probs=98.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNG 443 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~-t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~ 443 (782)
|.|+|.|++|+||++.+. .+. ||||++++++...+|+++++ +.||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~---~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRK---LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCc---CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 689999999999997653 356 99999999999999999865 79999999999999864 56899999998863
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|++||++.++++++..+....+||+|.. +| +..|+|+|++.|
T Consensus 76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -----CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 38899999999999877766789999974 23 456999998865
No 46
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.77 E-value=7.5e-18 Score=154.19 Aligned_cols=117 Identities=28% Similarity=0.448 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
.|+|+|++|++|+..+..+.+||||++++++.+++|+++++|.||+|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3899999999999999889999999999999999999999999999999999998876667899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCc----ccceEEEEEE
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK----ITQGEIMLAV 162 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~----~~~G~l~l~~ 162 (782)
++.+++.++..... ...||.|.+....+ ...|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999976432 56899998643221 2248888765
No 47
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=3.7e-18 Score=151.37 Aligned_cols=102 Identities=29% Similarity=0.477 Sum_probs=92.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRV 121 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~ 121 (782)
|.|+|++|++|+..+..+.+||||+++++++.++|+++.+|.||+|||+|.|.+..+....|.|+|+|.+. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 79999999999999888999999999999999999999999999999999999988767899999999986 8999999
Q ss_pred EEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 122 TFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 122 ~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
.++|.++.... ....++||+|.+.
T Consensus 80 ~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccc---cceeeeeEecCCC
Confidence 99999998653 2347899999764
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=6.1e-18 Score=155.08 Aligned_cols=116 Identities=34% Similarity=0.473 Sum_probs=100.8
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
.|...+++.|+.. .+.|.|+|++|+||+.++..|.+||||++++.+ .+++|++++++.||+|||+|.|.+.. .
T Consensus 2 ~G~l~~~l~y~~~--~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQ--SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCC--CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 4678888888884 459999999999999999889999999999964 46799999999999999999999754 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
....|.|+|||++.+ ++++||++.+++.++..+. ...+|++|+
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 457899999999988 8999999999999987643 367999986
No 49
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=5.3e-18 Score=155.83 Aligned_cols=115 Identities=39% Similarity=0.584 Sum_probs=97.9
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
+|...+++.|+.. .+.|.|+|++|+||+..+..+.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 2 ~G~l~~~l~~~~~--~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 79 (125)
T cd04031 2 TGRIQIQLWYDKV--TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79 (125)
T ss_pred cEEEEEEEEEeCC--CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCH
Confidence 5778888888884 458999999999999999889999999999975 57799999999999999999998532
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 80 ~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 80 ETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 3457899999999988 899999999999993322 146899985
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=6.5e-18 Score=155.07 Aligned_cols=118 Identities=28% Similarity=0.356 Sum_probs=98.8
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-ec--
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~-~~-- 96 (782)
.|..++++.|+.. .+.|.|+|++|+||+..+.. |.+||||++.+.+ ++.||+++++|.||+|||+|.|. +.
T Consensus 2 ~G~l~~~l~y~~~--~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSE--KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECC--CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 4678999999985 46999999999999998875 8999999999963 46799999999999999999993 43
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+.....|.|+|||++.+ ++++||++.++|.++...... ....|.+|.
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 33456899999999988 999999999999999775321 156787774
No 51
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=8.2e-18 Score=155.31 Aligned_cols=121 Identities=23% Similarity=0.437 Sum_probs=101.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~~~~ 444 (782)
|.|+|.|++|+||++.+.. +.+. ||||++.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 6899999999999976531 1466 999999999999999999999999999999999997 4679999999999765
Q ss_pred CCCcCCCccEEEEEeccccc---CCcEEEEEEEceeeCCC-CCccccEEEEEEE
Q 045512 445 KDDAIDQRIGKVRIRLSTLE---TDRLYTHYYPLLVLTPS-GLKKNGELHLALR 494 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~ 494 (782)
.+++||++.|++.++. .......||+|...... .....|+|+|++.
T Consensus 78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 7899999999999987 33446899999875332 2235799999875
No 52
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.76 E-value=8.2e-18 Score=152.91 Aligned_cols=113 Identities=30% Similarity=0.443 Sum_probs=98.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
|.|+|++|++|+..+..+.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999998889999999999964 57899999999999999999999876556789999999998889999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+.. ...|++|.+.. .|+|.+.+.+
T Consensus 82 G~~~~~l~~l~~g~~-----~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEK-----VRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCc-----EEEEEECCCCC-----CceEEEEEEe
Confidence 999999999987543 67899997642 2888888754
No 53
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.8e-17 Score=151.91 Aligned_cols=118 Identities=24% Similarity=0.380 Sum_probs=97.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~ 116 (782)
...|.|+|++|+||+.+ +.+||||+|.+++. ..+|++. ++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999874 57899999999985 4689874 689999999999986554446799999999988 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC-CcccceEEEEEEEEc
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG-DKITQGEIMLAVWIG 165 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~ 165 (782)
+||++.++|.++..+. ....||+|....+ .....|+|+++++|.
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999987753 2679999987653 122349999999885
No 54
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=1.1e-17 Score=153.58 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=100.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--NKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
|.|+|++|+||+. ..|. ||||+++++ .++.||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5689999999985 2356 999999997 3678999999999999999999999765678999999999865
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999998877778999998653333445799999998843
No 55
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=1.1e-17 Score=152.89 Aligned_cols=113 Identities=33% Similarity=0.585 Sum_probs=99.6
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 40 HYLFVNVVKARNLPVMDV------SGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
|.|+|+|++|+||+..+. .|.+||||+++++++.++|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998874 36899999999999999999999999999999999998876678999999999888
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEE
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAV 162 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 162 (782)
++++||++.+++.++..+. ...+||+|.+.. .|+|++.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~-----~G~~~~~~ 119 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDVK-----SGRLHLKL 119 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCCC-----CceEEEEE
Confidence 8999999999999998643 367999998642 29998876
No 56
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=1.5e-17 Score=154.63 Aligned_cols=121 Identities=28% Similarity=0.432 Sum_probs=98.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC---------CCCeEEEEEEeC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL---------QSNLVEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~---------~~~~L~v~V~d~ 110 (782)
++|+|+|++|++|+.+|..|.+||||+|.+++++++|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999975322 125799999999
Q ss_pred CCC-CCceeEEEEE-EccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 111 DIG-KDDFVGRVTF-DLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 111 d~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+.. +|++||++.+ ++..+... ......++|++|....+ . .|+|++++.+.
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~~--~-~Geil~~~~~~ 132 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGGQ--S-AGELLAAFELI 132 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCCC--c-hhheeEEeEEE
Confidence 998 8999999997 44444332 12345789999975432 2 39999998664
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=7.5e-18 Score=152.70 Aligned_cols=113 Identities=23% Similarity=0.380 Sum_probs=97.6
Q ss_pred ceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEec--cC
Q 045512 27 DKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wne~f~f~~~--~~ 98 (782)
+.++++|+. ..+.|.|+|++|+||+..+..|.+||||++++-+ .+++|++++++.||+|||+|.|++. ++
T Consensus 3 i~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L 80 (124)
T cd08680 3 VQIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL 80 (124)
T ss_pred EEEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh
Confidence 568888888 4569999999999999998889999999999853 3689999999999999999999975 34
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
....|.|.|||++.. ++++||++.|+|.++..... ....||+|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 678999999999988 89999999999999966432 26789876
No 58
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=6.6e-18 Score=151.44 Aligned_cols=106 Identities=25% Similarity=0.422 Sum_probs=93.6
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC----CCCeEEEEEEeCCC
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL----QSNLVEVTVKDKDI 112 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~----~~~~L~v~V~d~d~ 112 (782)
++.+.|+|+|++|++|+ .|.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35789999999999998 57899999999999999999999999999999999987542 35689999999998
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
. ++++||++.++|+++..+. ++.+..+|++|.++
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred cccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8 8999999999999998753 45678999999763
No 59
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.2e-17 Score=153.72 Aligned_cols=119 Identities=26% Similarity=0.424 Sum_probs=99.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITIGVFDNCHVN 442 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V~d~~~~~ 442 (782)
.|.|+|++|+||.+.+. .|. ||||++.+++++.||++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~d~---~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG---QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCC---CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 37899999999997653 356 9999999999999999999999999999999999864 247999999988652
Q ss_pred CCCCCcCCCccEEEEEeccccc-CCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLE-TDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.+|++||++.|+++++. .+.....||+|......+ +..|+|+|++.+
T Consensus 78 -----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 125 (127)
T cd04022 78 -----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYI 125 (127)
T ss_pred -----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEE
Confidence 15899999999999997 566778999998643222 346999998866
No 60
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.75 E-value=2.2e-17 Score=156.94 Aligned_cols=119 Identities=28% Similarity=0.440 Sum_probs=101.4
Q ss_pred cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeccccCCCCCeec
Q 045512 40 HYLFVNVVKARNLPVMD------------------------------VSGSLDPYVEVKLGNYK-GIAKHLEKNQNPVWN 88 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wn 88 (782)
|.|.|+|.+|++|+.+| ..|++||||+|.+++.+ .+|++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 68999999999999987 35779999999999854 699999999999999
Q ss_pred cEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEEEEEE
Q 045512 89 QIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIMLAVWI 164 (782)
Q Consensus 89 e~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 164 (782)
|+|.|.+... ...|.|.|+|.+..++++||++.+++.++..+. ...+|++|.+..+.. ...|.|++++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999998664 468999999999887899999999999998643 267999998875543 223899999876
No 61
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.75 E-value=1.3e-17 Score=152.35 Aligned_cols=105 Identities=17% Similarity=0.217 Sum_probs=90.0
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC---CCceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~ 434 (782)
+..|.|.|.|++|+||++.+. ..|. ||||++++. ..+.||++++++.||+|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 445889999999999997653 2356 999999984 235799999999999999999999874 24589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|||++.++ ++++||++.|+|.++...+..+.||||.
T Consensus 90 V~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999876 8999999999999998888899999983
No 62
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=1.4e-17 Score=152.07 Aligned_cols=116 Identities=28% Similarity=0.548 Sum_probs=99.8
Q ss_pred eEEEEEEEEeeCCCCCCCCC---CCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCC
Q 045512 367 GILELGILSAKNLMPMTSKD---GKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~---~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~ 441 (782)
|.|+|+|++|+||++++... ..|. ||||+++++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999876421 1356 999999999999999999999999999999999986 467999999999853
Q ss_pred CCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++++++..+.....||+|.+. ..|+|+++++|
T Consensus 81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred -------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 688999999999999888778999999742 45999998764
No 63
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.6e-17 Score=154.01 Aligned_cols=104 Identities=22% Similarity=0.347 Sum_probs=89.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVF-DNC 439 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~-d~~ 439 (782)
|.|.|.|++|+||.+.+ +..|. ||||++++.+ .+.||+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998764 22355 9999999943 368999999999999999999999855679999999 566
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 654 789999999999999878778899999864
No 64
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=8e-18 Score=152.13 Aligned_cols=110 Identities=22% Similarity=0.374 Sum_probs=91.5
Q ss_pred CceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC-C
Q 045512 26 GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL-Q 99 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~-~ 99 (782)
..++++.| ..+.|.|+|++|+||+.++ .|.+||||++++.+ .+.+|++++++.||+|||+|.|.+... .
T Consensus 2 ~l~l~~~~----~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~ 76 (119)
T cd08685 2 QLKLSIEG----QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY 76 (119)
T ss_pred EEEEEEEE----cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh
Confidence 35566555 3468999999999999998 88999999999974 366899999999999999999997532 2
Q ss_pred CCeEEEEEEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 100 SNLVEVTVKDKDIG--KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 100 ~~~L~v~V~d~d~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
...|.|.|||++.. ++++||++.|++.++..+. ...+||.|
T Consensus 77 ~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 77 QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 35789999999987 4799999999999997543 25799986
No 65
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=8.6e-18 Score=156.98 Aligned_cols=104 Identities=26% Similarity=0.405 Sum_probs=89.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec---------------cCCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE---------------RLQS 100 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~---------------~~~~ 100 (782)
.|.|+|++|+||+. .+|.+||||+|++.+ .+.+|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 579999999999986 5779999999999999999999984 2234
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 101 NLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 101 ~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
..|.|.|||++.. +|++||++.|++.++.... .....||+|.+.++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCccc
Confidence 6799999999988 9999999999999998751 12578999987653
No 66
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=1.2e-17 Score=147.44 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=85.6
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEE
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN----KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGV 435 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V 435 (782)
.+..+.|.|+|++|+||+ . + +++||||++++.. .+.+|+++++|+||+|||+|.|.|.. +...|.|+|
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 455689999999999998 2 1 2359999999964 57899999999999999999999874 356899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
||+|.++ ++++||++.++++++..+....+|..|
T Consensus 85 ~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence 9999987 899999999999988555555677654
No 67
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=2.3e-17 Score=150.15 Aligned_cols=117 Identities=29% Similarity=0.445 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|+.++..|.+||||+++++++ ..+|+++.+|.||+|||.|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999886 47999999999999999999998653 47899999999998 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
++.+++.++..... ...+|++|.+..+.....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999988864321 25789999865432222399998864
No 68
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.75 E-value=1.5e-17 Score=151.25 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=87.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEE-e--C-CCceEEEEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEV-Y--D-PCTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v-~--~-~~~~l~i~V~ 436 (782)
+.|.|.|++|+||++++ .+. ||||++++.+ .+.||++++++.||.|||+|.|++ . + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~~----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCCC----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 78999999999999775 356 9999999963 468999999999999999999998 3 2 3568999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
|++.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 899999999999999988778999997
No 69
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=1.9e-17 Score=152.07 Aligned_cols=116 Identities=34% Similarity=0.464 Sum_probs=100.1
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEec---c
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKE---R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~---~ 97 (782)
.|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+. +++.+|++++++.||+|||+|.|... .
T Consensus 2 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 467889999977 456999999999999999988999999999994 45789999999999999999999742 2
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||++.. ++++||++.+++.++..... ...|+.|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~-----~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEE-----QTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCC-----cceEEecC
Confidence 3456899999999988 89999999999999986432 67899885
No 70
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=2.1e-17 Score=152.26 Aligned_cols=115 Identities=31% Similarity=0.445 Sum_probs=99.8
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 56788999887 5579999999999999999889999999999963 57899999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 LQSNLVEVTVKDKDIG---KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||.+.. ++++||++.+++.++..+. ...+||+|.
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4457899999999873 8999999999999997653 267999984
No 71
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=2.1e-17 Score=150.86 Aligned_cols=115 Identities=25% Similarity=0.338 Sum_probs=99.6
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-ec--c
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFS-KE--R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~-~~--~ 97 (782)
.|...+++.|+... ..|.|+|++|+||+..+..|.+||||++.+.+ ++++|+++++ .||+|||+|.|. +. +
T Consensus 2 ~G~l~~sl~Y~~~~--~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSA--RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCC--CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 46788999999854 58999999999999999889999999988853 5789999887 999999999998 54 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||++.+ ++++||++.|+|.++.... ....|++|+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 4568899999999988 8999999999999997643 367999986
No 72
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=3e-17 Score=150.81 Aligned_cols=114 Identities=34% Similarity=0.583 Sum_probs=98.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC--------
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-------- 112 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~-------- 112 (782)
.|.|+|++|++|+..|..|.+||||+++++++.++|+++.+|.||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999999999999999999999999999988654 4689999999985
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEE
Q 045512 113 ----GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAV 162 (782)
Q Consensus 113 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 162 (782)
.++++||++.+++.++... .++||.|++..+.....|+|++++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2689999999999987432 569999998765543359998864
No 73
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=2.4e-17 Score=150.91 Aligned_cols=117 Identities=24% Similarity=0.389 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~~~ 445 (782)
+|+|+|++|++|.+++. .+. ||||+|++++...+|++++++.||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~---~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDR---NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCCCC---CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 48899999999997753 356 9999999999999999999999999999999999875 468999999999876
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCC---CCccccEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPS---GLKKNGELHLAL 493 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~ 493 (782)
++++||++.++|+++..+.....||.|.....+ ..+..|.|++.|
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999877667889999864332 123468888876
No 74
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=3.8e-17 Score=150.05 Aligned_cols=116 Identities=23% Similarity=0.380 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN--YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
|.|+|++|+||+. ..|.+||||++++++ ++++|+++.+|.||+|||.|.|.+.. ....|.|+|||++.. ++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999998 679999999999984 57899999999999999999999865 357899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CcccceEEEEEEEEcc
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG--DKITQGEIMLAVWIGT 166 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~ 166 (782)
|++.+++.++..... ..+|++|....+ ... .|+|.+.+.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~-~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSV-SGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCc-ceEEEEEEEEec
Confidence 999999999987543 468999987643 223 399999998753
No 75
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=3.5e-17 Score=148.81 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=95.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~ 443 (782)
|.|+|++|+||++.+. .+. ||||++++++ ...||++++++.||+|||.|.|.+... ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~~---~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDL---LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCC---CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 7899999999997653 356 9999999963 678999999999999999999999864 45799999999864
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++++++..+.....|++|.. +..|+|++++.+
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~ 117 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLL 117 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEe
Confidence 58899999999999999999999999964 235999998876
No 76
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=2.6e-17 Score=150.81 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=97.9
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
|.+.++++|+- ..+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 56788889976 4569999999999999988 778999999999853 36799999999999999999998754
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 98 -LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 98 -~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3457899999999988 8999999999999997543 25789987
No 77
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=3.4e-17 Score=152.15 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~ 439 (782)
.|+|+|++|+||+..+. .|. ||||++++++. ..+|++++++.||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~---~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDI---FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcccC---CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 37899999999997653 356 99999999764 57999999999999999999999765678999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcE------EEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRL------YTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.++ +|++||++.++++++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 876 79999999999999875532 45899998644333 446999999876
No 78
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=4.5e-17 Score=148.28 Aligned_cols=116 Identities=31% Similarity=0.488 Sum_probs=98.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|.|+|++|+||.+++. .|. ||||++.++++. .||+++++++||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~---~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDI---TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCCCC---CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 7899999999998764 356 999999998764 6999999999999999999999876689999999999876
Q ss_pred CcCCCccEEEEEecccccCC-cEEEEEEEceeeCCCCCccccEEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETD-RLYTHYYPLLVLTPSGLKKNGELHLALR 494 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+|++||++.++++++..+ ...+.|++|......+ ...|+|+++++
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988754 3468899998754333 34699998864
No 79
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.73 E-value=3.2e-17 Score=156.41 Aligned_cols=118 Identities=31% Similarity=0.407 Sum_probs=100.6
Q ss_pred CCceeEEEecccc----------cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeecc
Q 045512 25 GGDKTASSYDLVE----------QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGIAKHLEKNQNPVWNQ 89 (782)
Q Consensus 25 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~i~~t~nP~wne 89 (782)
|...+++.|.... ..+.|.|+|++|+||+..+..|.+||||+|++. ..+++|+++++|.||+|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 6788999998855 568999999999999999988999999999983 2578999999999999999
Q ss_pred EEEEEec---cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 90 IFAFSKE---RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 90 ~f~f~~~---~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+|.|... +.....|.|+|||++.+ ++++||++.+++.++..... ...|+.+.+
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 9999742 33456899999999998 89999999999999876542 567887753
No 80
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.73 E-value=3e-17 Score=150.22 Aligned_cols=104 Identities=20% Similarity=0.349 Sum_probs=88.4
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V 435 (782)
..+.|.|+|++|+||++++. ..|. ||||++++.+ .+.||+++++++||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~--~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADP--KKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCC--CCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34789999999999998753 2255 9999999942 35799999999999999999999874 245899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
||++.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999876 8999999999999998777778999983
No 81
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=1.3e-16 Score=146.43 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=98.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
...|+|+|++|++|...+. .|. ||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~---~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS---GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC---CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 3689999999999987653 466 999999999999999999999999999999999988888999999999865
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCC-CCCccccEEEEEEEE
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP-SGLKKNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.++++.+..+. .++|+|..... ...+..|+|.+++..
T Consensus 76 ----~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 76 ----CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ----CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 5899999999999875433 67899964321 122457999998765
No 82
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.3e-16 Score=146.47 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=99.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeE
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVG 119 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG 119 (782)
..|+|+|++|++|+..+..|.+||||++.+++++.+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++||
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~lG 81 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFLG 81 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCceE
Confidence 57999999999999999889999999999999999999999999999999999988764 67899999999888899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCC--cccceEEEEEEEEc
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD--KITQGEIMLAVWIG 165 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~ 165 (782)
++.+++.++.. ...+|++|...... ....|+|.+++.+.
T Consensus 82 ~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 82 QATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 99999987532 24588899643211 12249999988553
No 83
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=3.8e-17 Score=145.70 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
+.|.|.|++|++|+.++ +.||||+|++++++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~----- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI----- 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-----
Confidence 68999999999997422 2399999999999999999988 499999999999998877899999999854
Q ss_pred CcCCCccEEEEEecccccCCcEE--EEEEEceee
Q 045512 447 DAIDQRIGKVRIRLSTLETDRLY--THYYPLLVL 478 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 478 (782)
+|++||++.|+|+++..+... ..||+|...
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 799999999999999766554 789999853
No 84
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.72 E-value=4.4e-17 Score=150.16 Aligned_cols=102 Identities=29% Similarity=0.379 Sum_probs=88.6
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDV--SGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~ 96 (782)
+|.+.+++.|... .+.|.|+|++|+||+.++. .+.+||||+|++.+ .++||++++++.||+|||+|.|.+.
T Consensus 1 ~Gel~~sL~Y~~~--~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~ 78 (138)
T cd08407 1 TGEVLLSISYLPA--ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELP 78 (138)
T ss_pred CCEEEEEEEEeCC--CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECC
Confidence 4778899999874 4689999999999999883 35699999999975 2568999999999999999999985
Q ss_pred c--CCCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 045512 97 R--LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 97 ~--~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~ 127 (782)
. +....|.|+|||+|.+ ++++||++.+.+..
T Consensus 79 ~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 79 SELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 3 4567899999999998 99999999999864
No 85
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=4.5e-17 Score=145.66 Aligned_cols=104 Identities=35% Similarity=0.544 Sum_probs=91.4
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeccccCCCCCee-ccEEEEEeccC--CCCeEEEEEEeCCCC-CCc
Q 045512 42 LFVNVVKARNLPVMDV-SGSLDPYVEVKLGNYKGIAKHLEKNQNPVW-NQIFAFSKERL--QSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~i~~t~nP~w-ne~f~f~~~~~--~~~~L~v~V~d~d~~-~d~ 116 (782)
|.|+|++|++|+.++. .|.+||||++++++++++|++++++.||+| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5899999999999884 689999999999999999999999999999 99999998653 357899999999998 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 2234789999975
No 86
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=8.4e-17 Score=146.15 Aligned_cols=119 Identities=25% Similarity=0.441 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCcee
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEIL 282 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~l 282 (782)
+|+|+|++|++|+.. .+||||++.++++..+|+++++ +.||.|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 489999999999887 6899999999999999999986 99999999999998776678899999999876 78999
Q ss_pred EEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEe
Q 045512 283 GREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCL 337 (782)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~ 337 (782)
|++.++++++..+...++....+||+|.... ..+..|+|.+++.|
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----------~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----------GGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCC----------CCccceEEEEEEEe
Confidence 9999999998754312344578999998764 13567999998876
No 87
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.72 E-value=4.8e-17 Score=149.35 Aligned_cols=118 Identities=20% Similarity=0.316 Sum_probs=101.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeecccc-CCCCCeeccEEEEEeccCC----CCeEEEEEEeCCCC-
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLE-KNQNPVWNQIFAFSKERLQ----SNLVEVTVKDKDIG- 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~-~t~nP~wne~f~f~~~~~~----~~~L~v~V~d~d~~- 113 (782)
.|.|+|++|++|+..+..+.+||||+|++++ ++.+|+++. ++.||+|||+|.|.+.... ...|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3799999999999998889999999999998 889999986 5889999999999987653 58899999999987
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEE
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIML 160 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 160 (782)
++++||++.+++.++......+......||+|..++|+. .|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~--~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP--QGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc--CeEEeC
Confidence 899999999999999987654334567999999877654 388864
No 88
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.72 E-value=5.8e-17 Score=143.68 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=83.0
Q ss_pred cEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC-CCCeEEEEEEeCCCC-
Q 045512 40 HYLFVNVVKARNLPVMDVS----GSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL-QSNLVEVTVKDKDIG- 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~-~~~~L~v~V~d~d~~- 113 (782)
|.|.|+|++|++|+..+.. +.+||||+|+++++++||++++++.||+|||.|.|.+... ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 3589999999999999999999999999999999998653 345899999999998
Q ss_pred CCceeEEEEEEccccCCCCC
Q 045512 114 KDDFVGRVTFDLFEVPHRVP 133 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~ 133 (782)
+|++||++.++|.+|..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987653
No 89
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.4e-16 Score=146.72 Aligned_cols=114 Identities=27% Similarity=0.368 Sum_probs=100.2
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC--CCCeEEEEEEeCCCC-CCceeEEEE
Q 045512 46 VVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL--QSNLVEVTVKDKDIG-KDDFVGRVT 122 (782)
Q Consensus 46 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~--~~~~L~v~V~d~d~~-~d~~lG~~~ 122 (782)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 578999999999999999999999999999999999998653 468899999999988 899999999
Q ss_pred EEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEccc
Q 045512 123 FDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQ 167 (782)
Q Consensus 123 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (782)
+++.++..+. ....|++|.+.++.... |+|+++++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~-~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTG-ATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCccc-EEEEEEEEEeCC
Confidence 9999998643 26789999877766555 999999988743
No 90
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.71 E-value=1.1e-16 Score=146.72 Aligned_cols=104 Identities=22% Similarity=0.398 Sum_probs=90.2
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~ 436 (782)
+..|.|.|+|++|+||++++. .|. ||||++.+. ....||++++++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDF---SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCC---CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 345899999999999997653 356 999999983 3568999999999999999999998742 458999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++.++ +|++||++.|+|+++..++..+.||+|.
T Consensus 90 d~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999876 7999999999999998777889999985
No 91
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.71 E-value=7.4e-17 Score=148.86 Aligned_cols=101 Identities=32% Similarity=0.305 Sum_probs=88.5
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|.+.+++.|+.. ...|.|+|++|+||+..+..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+..
T Consensus 2 G~i~~sL~Y~~~--~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLPT--AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcCC--CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 678899999875 458999999999999999889999999999953 26689999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~ 127 (782)
+....|.|.|||+|.. ++++||++.+....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 5678899999999988 99999999997653
No 92
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=1.7e-16 Score=144.91 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=97.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C--Cce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLG-NYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K--DDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~--d~~ 117 (782)
|+|+|++|++|+..+..+.+||||+++++ .+.++|++++++.||+|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578899999999999999999999876 57999999999987 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--cccceEEEEEE
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD--KITQGEIMLAV 162 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~ 162 (782)
||++.+++.++..... ...+|++|...... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999976432 24679999766531 22238888764
No 93
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.71 E-value=5e-17 Score=145.61 Aligned_cols=99 Identities=28% Similarity=0.425 Sum_probs=86.5
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccC---CCCeEEEEEEeCCC
Q 045512 40 HYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERL---QSNLVEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~---~~~~L~v~V~d~d~ 112 (782)
|.|+|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++|+||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5899999999999999987 8999999999953 467999999999999999999987543 34689999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
. +|++||++.+++.++.. .+.|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~--------~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE--------DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc--------CCCCCccc
Confidence 8 89999999999999984 34677764
No 94
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.71 E-value=1.4e-16 Score=145.83 Aligned_cols=116 Identities=31% Similarity=0.370 Sum_probs=99.0
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
|...++++|+-. .+.|.|+|++|+||+..+ ..+.+||||++++. .+.++|++++++.||+|||+|.|.+.. .
T Consensus 1 G~l~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLE--EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCC--CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 456788888874 559999999999999998 68899999999985 346789999999999999999999754 2
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
....|.|.|||++.. ++++||++.++|.++..... ...|++|++
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~~ 123 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLEP 123 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCC-----ceEEEeCCC
Confidence 346899999999988 89999999999999987653 468999863
No 95
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.70 E-value=1.9e-16 Score=144.93 Aligned_cols=106 Identities=24% Similarity=0.294 Sum_probs=89.6
Q ss_pred EEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 045512 202 YYLRVFVFEAQDLVPSEEG-RAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 273 (782)
+.|.|+|++|+||+..+.. |.+||||++++.. .+.||+++++ +.||+|||+|.|.+... ....|.++|||+
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 3699999999999998875 8899999999962 3678999886 99999999999998543 245799999999
Q ss_pred cCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEcc
Q 045512 274 IGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 274 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
+..+++++||++.|+|+++.-. +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~--~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE--DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC--CCCccccceEECc
Confidence 9989999999999999998643 3345678999874
No 96
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1e-16 Score=143.94 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=85.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-C----C--EEEeeccccCCCCCccccEEEEEEeCC----CceEEEEE
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-G----N--KWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITIGV 435 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-~----~--~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V 435 (782)
.|+|+|++|+||+..+ .|. ||||+|++ | . ++++|+++.+++||+|||.|+|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 3889999999998754 266 99999998 3 2 357899999999999999999999742 34699999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
||++..+ +|++||++.++|+++..++....|++|..
T Consensus 77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 78999999999999999888899999964
No 97
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.70 E-value=2.8e-16 Score=145.19 Aligned_cols=124 Identities=24% Similarity=0.427 Sum_probs=102.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
...|.|.|++|+||++++ ||||.|.++++. .||+++.++.||.|||.|.|.+..+...+.|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC-------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 467999999999998532 799999999987 5999999999999999999987766678999998765321
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCC-------CccccEEEEEEEEEEC
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSG-------LKKNGELHLALRFTCT 498 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~~~~~ 498 (782)
++..++++||++.|++.++..+...++||||.....+. ....++|+++++|...
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 01226899999999999999999999999999876543 2335799999999654
No 98
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.70 E-value=3.3e-16 Score=145.17 Aligned_cols=115 Identities=28% Similarity=0.408 Sum_probs=98.5
Q ss_pred cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLPVMDVS----------GSLDPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
|.|+|+|++|++|+..+.. |.+||||++.+++++ .+|+++.+|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999988752 689999999999864 699999999999999999999874 578999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
|++.. ++++||++.++|.++..+. ......|++|+. .|+|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC-------CcEEEEEEEEec
Confidence 99887 8899999999999998741 123689999972 299999987753
No 99
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=1.2e-16 Score=141.55 Aligned_cols=95 Identities=22% Similarity=0.386 Sum_probs=82.7
Q ss_pred eEEEEEEEEeeCCCCCCCCC-CCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKD-GKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIGVFDNCHVN 442 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~-~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~V~d~~~~~ 442 (782)
|.|.|+|++|+||++.+... .++. ||||+++++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999876432 2234 9999999999999999999999999999999999753 347999999999876
Q ss_pred CCCCCcCCCccEEEEEecccccCCc
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+|++||++.++|++|..+.
T Consensus 81 ------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
No 100
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.4e-16 Score=146.19 Aligned_cols=118 Identities=31% Similarity=0.348 Sum_probs=98.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC--EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~ 442 (782)
.|.|+|+|++|+||+..+. ..+. ||||++++++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 4889999999999985432 2355 9999999987 789999999999999999999999866789999999998765
Q ss_pred CCCCCcCCCccEEEEEecccccCCcEEEE-EEEceeeCCCCCccccEEEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLETDRLYTH-YYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|.++..+..... ++++.. +.+..|+|+++++|
T Consensus 79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~----~~k~~G~i~~~l~~ 122 (124)
T cd04044 79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLLR----NGKPVGELNYDLRF 122 (124)
T ss_pred ------CCceeEEEEEEHHHhccCccccCcchhhhc----CCccceEEEEEEEe
Confidence 79999999999999987766543 444531 23456999999987
No 101
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.70 E-value=1.4e-16 Score=143.98 Aligned_cols=100 Identities=18% Similarity=0.295 Sum_probs=85.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYD--PCTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~--~~~~l~i~V~d~ 438 (782)
+.|.|+|++|+||++++ .|. ||||++++.+ .+.||++++++.||.|||+|.|.+.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCCC----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 68999999999999764 255 9999999953 36799999999999999999999874 245799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
+..+ ..+++||.+.|+|.++..+..++.||.|
T Consensus 88 ~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8643 1468999999999999888878999986
No 102
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.2e-16 Score=149.30 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=92.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEe---------------C
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVY---------------D 426 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~---------------~ 426 (782)
.|.|+|++|+||.. ..|. ||||+|.+.+ .+.+|++++++.||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999985 2356 9999999976 5789999999999999999999995 1
Q ss_pred C-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCC-cEEEEEEEceeeCCCC---------CccccEEEEEE
Q 045512 427 P-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETD-RLYTHYYPLLVLTPSG---------LKKNGELHLAL 493 (782)
Q Consensus 427 ~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~i~l~~ 493 (782)
. ...|.|.|||++.++ .|++||++.|+|..+..+ .....||+|.....+. ..+.|.|+|++
T Consensus 76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1 247999999998765 799999999999999876 5678999998654322 12357777654
No 103
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.1e-16 Score=143.14 Aligned_cols=101 Identities=27% Similarity=0.457 Sum_probs=88.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCcc-ccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRW-NEQYTWEVYDP---CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~w-ne~~~f~v~~~---~~~l~i~V~d~~~~~~ 443 (782)
|.|+|++|+||++++. ..+. ||||+++++++.+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999997752 2355 99999999999999999999999999 99999999863 368999999999876
Q ss_pred CCCCcCCCccEEEEEecccccC---CcEEEEEEEcee
Q 045512 444 SKDDAIDQRIGKVRIRLSTLET---DRLYTHYYPLLV 477 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 477 (782)
+|++||++.+++.++.. +..++.||+|.+
T Consensus 78 -----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -----CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999976 456889999964
No 104
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=4.4e-16 Score=143.24 Aligned_cols=119 Identities=25% Similarity=0.397 Sum_probs=100.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d 115 (782)
+.|.|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.......|.|+|||++.. ++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999889999999999875 367999999999999999999998775567899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEccc
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQ 167 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (782)
++||++.++|.++.... +......|++|.. .|+|++.+.+...
T Consensus 81 ~~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGD--DGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCC--CCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 99999999999875432 1223578999964 1899988877643
No 105
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=4.1e-16 Score=144.47 Aligned_cols=117 Identities=24% Similarity=0.381 Sum_probs=98.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCC-------CCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKD-------GKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~-------~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~ 436 (782)
.|.|+|+|++|+||.+.+... +.+. ||||++.++++. .+|++++++.||.|||.|+|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 488999999999999776410 1256 999999999865 699999999999999999999974 578999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccC--CcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLET--DRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|++.++ ++++||++.++|+++.. +.....|++|. +.|+|++++.+..
T Consensus 82 d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998765 78999999999999987 56678999995 2599999988753
No 106
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.69 E-value=2.9e-16 Score=143.90 Aligned_cols=104 Identities=26% Similarity=0.323 Sum_probs=89.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~ 436 (782)
...+.|.|+|++|+||++.+. .+. ||||++.+.+ ..+||++++++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~---~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDM---GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccC---CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 344789999999999997653 356 9999999843 468999999999999999999998742 458999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++.++ +|++||++.++|+++..+...++|++|.
T Consensus 90 d~d~~~------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 90 DFDRFS------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eCCCCC------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999876 7899999999999998888889999985
No 107
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.69 E-value=3.8e-16 Score=143.46 Aligned_cols=120 Identities=25% Similarity=0.403 Sum_probs=96.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC--
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS-- 444 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~-- 444 (782)
.|+|+|++|++|+..|. .|. ||||++.++++..+|++++++.||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~d~---~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDK---TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCC---CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 58999999999997653 356 999999999999999999999999999999999977667899999999852100
Q ss_pred ---CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEE
Q 045512 445 ---KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 445 ---~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
-..+++++||++.+++.++.... ..||+|......+ ...|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 00137999999999999986443 7899998654322 2368888763
No 108
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=4.3e-16 Score=142.90 Aligned_cols=119 Identities=27% Similarity=0.363 Sum_probs=97.8
Q ss_pred ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 39 MHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGN--YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
+|.|.|+|++|++|+..+ ..+.+||||++++++ ..++|+++.++.||+|||.|.|.+.. ....|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999755 356799999999998 78999999999999999999999884 468999999999988 9
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
|++||++.+++.++..+... ...|+.+. .+++ . .|+|++++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~-~~~k-~-~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLL-RNGK-P-VGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhh-cCCc-c-ceEEEEEEEeC
Confidence 99999999999999876431 12344444 2333 2 39999999764
No 109
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.9e-16 Score=146.05 Aligned_cols=108 Identities=24% Similarity=0.422 Sum_probs=91.4
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC-CCCeEEEE
Q 045512 42 LFVNVVKARNLPVMDVS--------------GSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL-QSNLVEVT 106 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~-~~~~L~v~ 106 (782)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998844 3789999999999999999999999999999999987533 35689999
Q ss_pred EEeCCCC-CCceeEEEEEEccccCCCCCCC--CCCCCeEEEeecCC
Q 045512 107 VKDKDIG-KDDFVGRVTFDLFEVPHRVPPD--SPLAPQWYRLEDRK 149 (782)
Q Consensus 107 V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 149 (782)
|||+|.. +|++||++.+++.++....... ....++|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987643210 12467999997654
No 110
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.68 E-value=3e-16 Score=146.94 Aligned_cols=101 Identities=30% Similarity=0.541 Sum_probs=89.5
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeccccCCCCCe
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----------------------------KGIAKHLEKNQNPV 86 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-----------------------------~~~T~~i~~t~nP~ 86 (782)
.++.+.|.|+|++|+||+.+|..|.+||||+|.+++. .++|+++.+|+||+
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 4577899999999999999999999999999999641 36899999999999
Q ss_pred eccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 87 WNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 87 wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
|||+|.|.+..+....|.|+|||++ +++||++.+++.++... ..+.||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 9999999998766789999999998 89999999999999832 25899987
No 111
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.68 E-value=5e-16 Score=143.08 Aligned_cols=106 Identities=22% Similarity=0.288 Sum_probs=89.3
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~ 434 (782)
+..+.|.|+|++|+||++.+. .+. ||||++.+. ....||++++++.||+|||.|.|.+... ...|.|.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDS---SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCCEEEEEEEEEECCCCccC---CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 334789999999999997753 355 999999985 4678999999999999999999998642 4689999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|||++.+. .++|++||.+.|+|.++..+.....||+|.
T Consensus 90 v~~~~~~~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 90 VKNSKSFL----SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEECCccc----CCCCceEEEEEEecccccccCCccceEECc
Confidence 99998641 127899999999999998888889999984
No 112
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.67 E-value=1.4e-16 Score=147.91 Aligned_cols=119 Identities=21% Similarity=0.392 Sum_probs=95.6
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|.+.+++.|.. ..+.|.|+|++|++|+..|..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 1 GELLLSLNYLP--SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CcEEEEEEECC--CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH
Confidence 56788888886 4579999999999999999889999999999832 35789999999999999999999843
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
.....|.|+|||++.. ++++||++.+........ ...+|+.|....+.
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~~~ 127 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQRT 127 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCCCC
Confidence 3445799999999988 999999998664332221 14678888766544
No 113
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.67 E-value=3.7e-16 Score=144.78 Aligned_cols=106 Identities=29% Similarity=0.396 Sum_probs=92.7
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEec
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGIAKHLEKNQNPVWNQIFAFSKE 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~i~~t~nP~wne~f~f~~~ 96 (782)
+|...+++.|+. ....|.|+|++|++|+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 79 (133)
T cd04009 2 YGVLTVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79 (133)
T ss_pred ceEEEEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEec
Confidence 466778888877 5569999999999999998889999999999963 4789999999999999999999976
Q ss_pred cC----CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCC
Q 045512 97 RL----QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 97 ~~----~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~ 131 (782)
.. ....|.|+|||++.. ++++||++.++|.++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 42 356899999999998 799999999999999853
No 114
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=4.2e-16 Score=139.70 Aligned_cols=107 Identities=27% Similarity=0.389 Sum_probs=93.5
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCC----CCeEEEEEEEcc
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF----EDLIIVTVEDRI 274 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~V~d~d 274 (782)
|+.+.|+|+|++|++|+ .+.+||||+++++++..+|+++++ +.||.|||+|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46788999999999998 577999999999999999999886 999999999999975443 457999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..+++++||++.++++++... ..+....+|++|..+
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 888899999999999999865 456678999999753
No 115
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=9.3e-16 Score=141.14 Aligned_cols=113 Identities=25% Similarity=0.357 Sum_probs=97.2
Q ss_pred EEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCc
Q 045512 373 ILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDA 448 (782)
Q Consensus 373 v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~ 448 (782)
|++|++|+. ..|. ||||++.+++..++|++++++.||+|||.|.|++.++ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 689999985 2356 9999999999999999999999999999999999753 568999999999865
Q ss_pred CCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEEC
Q 045512 449 IDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 449 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
+|++||++.++++++..+.....|++|.... +....|+|+++++|.+.
T Consensus 71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 7899999999999999888889999997543 22235899999988654
No 116
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.67 E-value=1.9e-16 Score=147.52 Aligned_cols=119 Identities=33% Similarity=0.413 Sum_probs=99.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
+|.+.++++|+. ..+.|.|+|++|+||+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 1 ~G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~ 78 (136)
T cd08404 1 RGELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE 78 (136)
T ss_pred CCeEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH
Confidence 367889999976 4568999999999999999899999999999953 25789999999999999999999753
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 98 -LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 98 -~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
.....|.|+|||++.+ ++++||++.+++.. . .. ...+|+.|....++
T Consensus 79 ~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~~-----~~~~w~~l~~~~~~ 127 (136)
T cd08404 79 ELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-GS-----GGHHWKEVCNPPRR 127 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-Cc-----hHHHHHHHHhCCCC
Confidence 3456799999999998 99999999999988 2 11 25789888765544
No 117
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=4.1e-16 Score=138.21 Aligned_cols=102 Identities=23% Similarity=0.423 Sum_probs=91.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeE
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILG 283 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG 283 (782)
|.|+|++|++|+..+..+.+||||+++++++..+|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999886 9999999999999988777889999999875 88999
Q ss_pred EEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 284 REFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 284 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++.++|.++... .....++||+|.+.
T Consensus 78 ~~~i~l~~l~~~---~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE---PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc---ccceeeeeEecCCC
Confidence 999999998853 24457899999865
No 118
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=4.2e-16 Score=144.64 Aligned_cols=118 Identities=19% Similarity=0.317 Sum_probs=96.8
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEec--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wne~f~f~~~-- 96 (782)
|++.+++.|+.. .+.|.|+|++|+||+..+..|.+||||++.+.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 ~ei~~sL~Y~~~--~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNAL--TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCC--CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 467888898884 469999999999999999899999999999953 2569999999999999999999986
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
++....|.|.|||.+.+ ++++||++.+++...-.. ...+|+.+....+
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~ 128 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG 128 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence 35567999999999988 999999999987644321 1346777755443
No 119
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=2.2e-16 Score=146.57 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=95.4
Q ss_pred eeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--CCC
Q 045512 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER--LQS 100 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~--~~~ 100 (782)
.+++.|+. ..+.|.|+|++|+||+..+..|.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.. +..
T Consensus 3 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYNT--QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 46677766 5679999999999999999889999999999963 36799999999999999999999754 345
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 101 NLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 101 ~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
..|.|+|||++.. ++++||++.+++..... ...+|+++....+.
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~-------~~~~W~~~l~~~~~ 125 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGE-------RLRHWLDCLKNPDK 125 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCc-------hHHHHHHHHhCCCC
Confidence 7899999999988 89999999999975211 24678888665443
No 120
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=1.1e-15 Score=140.35 Aligned_cols=103 Identities=29% Similarity=0.472 Sum_probs=87.1
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC---CCCeEEEEEEE
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP---FEDLIIVTVED 272 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d 272 (782)
.+.|+|+|++|++|+..+..+.+||||++.+.+ +..+|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 346999999999999999889999999999974 5778999886 99999999999986432 35679999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEcc
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
++..+++++||++.++|++... + ....||+|+
T Consensus 94 ~~~~~~~~~iG~~~i~l~~~~~---~---~~~~W~~L~ 125 (125)
T cd04031 94 YDRDGENDFLGEVVIDLADALL---D---DEPHWYPLQ 125 (125)
T ss_pred CCCCCCCcEeeEEEEecccccc---c---CCcceEECc
Confidence 9998899999999999998332 1 246899985
No 121
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=1.2e-15 Score=140.14 Aligned_cols=104 Identities=23% Similarity=0.312 Sum_probs=88.7
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE---CCEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY---GNKWIRTRTILDTLDPRWNEQYTWEVYD----PCTVITIGV 435 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~~~~T~~~~~t~nP~wne~~~f~v~~----~~~~l~i~V 435 (782)
+..+.|.|+|++|+||+.++. .+. ||||++.+ ++...+|++++++.||.|||.|.|.+.. ....|.++|
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~---~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDF---SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred CCCCEEEEEEEEecCCCCccC---CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 334789999999999987653 356 99999998 3467899999999999999999998532 235799999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
||++.++ ++++||++.++++++..+...+.|++|.
T Consensus 90 ~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFS------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCc------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999876 7899999999999999888889999985
No 122
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.66 E-value=9e-16 Score=140.13 Aligned_cols=117 Identities=27% Similarity=0.349 Sum_probs=92.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-NKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|+|+|++|+||+.++. .+. ||||++.++ .+.+||+++++++||.|||.|+|.+.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~~---~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKRDL---FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCccCC---CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 7899999999997653 356 999999996 678999999999999999999999975 679999999998764
Q ss_pred CcCCCccEEEEEecccccCCc-EEEEEEEceeeCCCC-CccccEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETDR-LYTHYYPLLVLTPSG-LKKNGELHLAL 493 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g-~~~~G~i~l~~ 493 (782)
...|++||++.++++++.... ....||+|....... ..-.|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 112689999999999986543 236699997654421 12257777654
No 123
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=1.2e-15 Score=139.74 Aligned_cols=104 Identities=21% Similarity=0.326 Sum_probs=88.2
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC---CceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~ 434 (782)
+..+.|.|+|++|+||++++. ..+. ||||++.+.+ ...+|++++++.||+|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 345889999999999998751 2356 9999998832 468999999999999999999998752 4589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
|||++.++ ++++||++.++|+++..+...+.||+|
T Consensus 89 v~d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999776 789999999999999777777999987
No 124
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.66 E-value=5.5e-16 Score=140.68 Aligned_cols=94 Identities=29% Similarity=0.361 Sum_probs=83.4
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEecc-CCCCeEEEEEEeCCCC-
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER-LQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~-~~~~~L~v~V~d~d~~- 113 (782)
...++.|.|+|++|++|+. +..+.+||||+|++++++++|++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3456899999999999985 667899999999999999999999999999999999997433 3468999999999998
Q ss_pred CCceeEEEEEEccccCC
Q 045512 114 KDDFVGRVTFDLFEVPH 130 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~ 130 (782)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997664
No 125
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=6.2e-16 Score=144.11 Aligned_cols=92 Identities=38% Similarity=0.506 Sum_probs=85.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
.|.|+|+|++|+||+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999999887 8999999999999999999999999999999999999876 68899999999998 8999
Q ss_pred eEEEEEEccccCCCC
Q 045512 118 VGRVTFDLFEVPHRV 132 (782)
Q Consensus 118 lG~~~i~l~~l~~~~ 132 (782)
||++.+++.++....
T Consensus 79 iG~a~i~l~~l~~~~ 93 (145)
T cd04038 79 MGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEHHHhhhhh
Confidence 999999999998653
No 126
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.66 E-value=9.6e-16 Score=142.48 Aligned_cols=102 Identities=24% Similarity=0.365 Sum_probs=88.4
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec--c
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~--~ 97 (782)
|.+.+++.|+.. .+.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~~--~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNPT--LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECCC--CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 667899999874 469999999999999988 88899999999864 3668999999999999999999985 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVP 129 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~ 129 (782)
+....|.|+|||.+.. ++++||++.+......
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 4557899999999988 9999999999865444
No 127
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.65 E-value=7.4e-16 Score=169.23 Aligned_cols=178 Identities=19% Similarity=0.308 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHH---HHHHHhhhccccCCchhhHHHHHHHHHHHHcCch--hHHHHHHHHHHHHhhcccc-CCCCCCCC
Q 045512 569 SKANFQRIMELFS---AICRWFNDICTWRNPVETVLLHVLFLILVFYPEL--ILPTIFLYLFLIGMWNYRF-RPRHPPQV 642 (782)
Q Consensus 569 ~~~n~~rl~~~~~---~~~~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~~p~~~ 642 (782)
.-+|+..+++++. .++.+++.+.+|++|.+|+.+++++.+++|..|+ ++|+++++++++|+|.... +.+.
T Consensus 485 I~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~---- 560 (683)
T PF04842_consen 485 IDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGK---- 560 (683)
T ss_pred CccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC----
Confidence 4589999999999 9999999999999999999999999999999887 8999999999999996554 3221
Q ss_pred CCcccccccccccccccccCCCcccccccCCCCCCCChHHHHHHHHHHHHhHhhHHHHHHHHhhHHHHHhhhhcccCchh
Q 045512 643 DAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRA 722 (782)
Q Consensus 643 ~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~ 722 (782)
.-++.....++... .++++-++|+.+.++++.|+.++.++.|+|.++.|..|.+
T Consensus 561 ------------------------~~~~v~V~~pP~~n--TvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~Pqa 614 (683)
T PF04842_consen 561 ------------------------SFGEVTVRDPPPKN--TVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQA 614 (683)
T ss_pred ------------------------ccceEEecCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 12222222233333 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhhhh-hccCCCCCCCCCC----cchhhhccCCC
Q 045512 723 TFIFLIFSFIWAVFSYVTPFQVVAVLIGLY-MLRHPRFRSKMPS----VPVNFFKSFPS 776 (782)
Q Consensus 723 s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~-~lr~P~~~~~~~~----~~~~~~~r~ps 776 (782)
|..++++++++|+++.++|+||++++..+. +-|+=.+|+.+.. .+-.+|-++|.
T Consensus 615 T~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 615 TNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999998877 3333335553322 34555666663
No 128
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.1e-15 Score=142.34 Aligned_cols=117 Identities=30% Similarity=0.454 Sum_probs=96.4
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeccccCCCCCeeccEEEEEec--c
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG--N---YKGIAKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~i~~t~nP~wne~f~f~~~--~ 97 (782)
|+..+++.|+.. .+.|.|+|++|+||+..+..|.+||||+|++. + .+++|++++++.||+|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~~--~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNPT--ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcCC--CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 677889999874 56899999999999999888999999999983 2 3578999999999999999999875 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
.....|.|+|||++.. ++++||++.+++.+... ....|+++....+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 3456899999999988 89999999999987521 1456666655443
No 129
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.65 E-value=3.2e-16 Score=146.03 Aligned_cols=117 Identities=28% Similarity=0.333 Sum_probs=96.3
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|+..+++.|+. ..+.|.|+|++|++|+.++..|.+||||+|++++ .+++|++++++.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 56788888887 5579999999999999999899999999999953 35789999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
.....|.|+|||++.+ ++++||++.+++..... ...+|+++....+
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~~~ 126 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLASPR 126 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhCCC
Confidence 3345899999999998 89999999999975321 1457777765443
No 130
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.65 E-value=1.3e-15 Score=140.99 Aligned_cols=115 Identities=33% Similarity=0.501 Sum_probs=100.3
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~- 98 (782)
|.+.++++|+. +.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|+++.++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 56778887777 68999999999999988889999999999964 578999999999999999999997653
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|.|||++.. ++++||++.+++.++... ....||+|.+.+
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 346899999999988 899999999999999854 257899998765
No 131
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=9.4e-16 Score=143.48 Aligned_cols=103 Identities=26% Similarity=0.341 Sum_probs=86.8
Q ss_pred EEEEEEEeeCCCCCCCCC-----------CCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEE
Q 045512 369 LELGILSAKNLMPMTSKD-----------GKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIG 434 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~-----------~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~ 434 (782)
|.|+|++|++|+++|... ..+. ||||+|.+++++.||++++++.||+|||+|.|++..+ ...|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999987431 1245 9999999999999999999999999999999998654 5689999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcE-------EEEEEEcee
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL-------YTHYYPLLV 477 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~ 477 (782)
|||+|..+ +|++||++.|+++++..... -.+|+.|.+
T Consensus 82 v~D~d~~~------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 82 IRDWDRVG------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEECCCCC------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999876 89999999999999865442 246777764
No 132
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=2.8e-15 Score=140.02 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=95.0
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeccccCCCCCeeccEEEEEeccC--------CCCeEEEE
Q 045512 42 LFVNVVKARN--LPVMDVSGSLDPYVEVKL--G---NYKGIAKHLEKNQNPVWNQIFAFSKERL--------QSNLVEVT 106 (782)
Q Consensus 42 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~--~---~~~~~T~~i~~t~nP~wne~f~f~~~~~--------~~~~L~v~ 106 (782)
..++|+.|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 677777889999999997 2 3689999999999999999999998643 24679999
Q ss_pred EEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 107 VKDKDIG--KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 107 V~d~d~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
|||++.+ +|++||++.++|..+..+.. ...|++|.+ |.+...|+|.+.+...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~--~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCE-----IHESVDLMD--GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCc-----ceEEEEhhh--CCCCcCCEEEEEEEec
Confidence 9999986 79999999999999977542 557999975 3333349999998765
No 133
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=1.9e-15 Score=138.04 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLDPRWNEQYTWE-VYD---PCTVITIGVF 436 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~~T~~~~~t~nP~wne~~~f~-v~~---~~~~l~i~V~ 436 (782)
..+.|.|+|++|+||++.+. .|. ||||++.+. .++.||+++++ .||+|||.|.|+ +.. ....|.|.||
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~---~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDR---GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred CCCEEEEEEEEecCCCchhc---CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 34789999999999997753 356 999998773 35789999888 999999999998 542 2558999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 90 ~~~~~~------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMR------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcc------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999876 8999999999999998888889999985
No 134
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=1.5e-15 Score=139.19 Aligned_cols=104 Identities=28% Similarity=0.369 Sum_probs=92.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccC---CCCeEEEEEEeCCCC-C
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERL---QSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~---~~~~L~v~V~d~d~~-~ 114 (782)
|.|.|+|++|++|+..+..+.+||||+|+++++.++|+++.+ +.||+|||+|.|.+... ....|.|+|||.+.+ +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888899999999999999889999885 89999999999998875 257899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+++||++.+++.++..+.. .+.|++|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~-----~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGV-----EPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCC-----CcCceEeecc
Confidence 9999999999999987432 5788888764
No 135
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=1.2e-15 Score=141.74 Aligned_cols=102 Identities=26% Similarity=0.430 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEeccC---------------CCCe
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLG----NYKGIAKHLEKNQNPVWNQIFAFSKERL---------------QSNL 102 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~i~~t~nP~wne~f~f~~~~~---------------~~~~ 102 (782)
|.|+|++|++|+.+ ..|.+||||+|+++ +++++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 6789999999999999999999997664 4578
Q ss_pred EEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 103 VEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 103 L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|.|+|||++.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999998 9999999999999988543 257999998876
No 136
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.64 E-value=3.6e-15 Score=139.31 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=90.9
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC---------CceE
Q 045512 369 LELGILSAKN--LMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEVYDP---------CTVI 431 (782)
Q Consensus 369 l~v~v~~a~~--L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v~~~---------~~~l 431 (782)
..++|..|+| |+..+ ..+. ||||++++ +.++.||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~~---~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSGW---NPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCCc---CCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455666666 55443 3456 99999987 34689999999999999999999999654 3469
Q ss_pred EEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 432 TIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 432 ~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|+|||++.+. .+|++||++.++|+.+..+.....|++|...+ ...+|+|+++++.
T Consensus 81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEe
Confidence 99999998763 17999999999999998877778899987421 1236999999986
No 137
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.64 E-value=1.7e-15 Score=140.69 Aligned_cols=117 Identities=23% Similarity=0.304 Sum_probs=95.0
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|...+++.|+. ..+.|+|+|++|++|+..+..|.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 1 g~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (134)
T cd08403 1 GELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN 78 (134)
T ss_pred CeEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH
Confidence 56788999987 5679999999999999999899999999999852 36789999999999999999998753
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
.....|.|+|||++.. ++++||++.+++..... ....|+.+....+
T Consensus 79 ~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~-------~~~~w~~~~~~~~ 125 (134)
T cd08403 79 VDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQ-------GREHWNEMLANPR 125 (134)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEECCCCCCc-------hHHHHHHHHHCCC
Confidence 3345799999999998 89999999998763221 1346666655444
No 138
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=2.9e-15 Score=139.19 Aligned_cols=120 Identities=24% Similarity=0.470 Sum_probs=98.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCC---------CCCeEEEEEEEc
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEP---------FEDLIIVTVEDR 273 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~d~ 273 (782)
+|+|+|++|++|+..+..|.+||||++.++++..+|+++++ +.||.|||.|.|.+... ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 68999999999999999999999999999999999999987 99999999999975322 124699999999
Q ss_pred cCCCCCceeEEEEEe-CCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEe
Q 045512 274 IGPGKDEILGREFIP-VRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCL 337 (782)
Q Consensus 274 d~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~ 337 (782)
+..++|++||++.+. +..+... .......+|++|.... ...|+|.+.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~------------~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG------------QSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC------------CchhheeEEeEE
Confidence 999999999999974 4334322 3455788999997543 356888887754
No 139
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=2.3e-15 Score=138.16 Aligned_cols=106 Identities=22% Similarity=0.190 Sum_probs=87.2
Q ss_pred EEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeeeecccccCCCCCCcccceeEEE-ecC--CCCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEG-RAPDAYVKIQLG---NLVRVTRPSHVRSVNPVWNEEHMFV-ASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg---~~~~kT~~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~V~d~d 274 (782)
..|+|+|++|++|+..+.. +.+||||++.+. .+..||+++++ +.||.|||+|.|. +.. .....|.++|||++
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 3699999999999998876 889999999986 35678999887 9999999999993 432 22346999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
..+++++||++.++|+++... +......|++|++
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~~~~~~ 128 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL---NEGELLVSREIQP 128 (128)
T ss_pred CCCCCceeEEEEEeccccCCC---CCceEEEEEeccC
Confidence 999999999999999998653 1234778888763
No 140
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.64 E-value=3.4e-15 Score=137.60 Aligned_cols=117 Identities=23% Similarity=0.370 Sum_probs=95.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeccccCCCCCee-ccEEEEEeccCCCCeEEEE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------YKGIAKHLEKNQNPVW-NQIFAFSKERLQSNLVEVT 106 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~i~~t~nP~w-ne~f~f~~~~~~~~~L~v~ 106 (782)
...|++++|+||+ ++..|++||||++.+.+ ++++|+++++|+||+| ||+|.|.+.. ...|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 3579999999998 67789999999999953 3689999999999999 9999999854 4689999
Q ss_pred EEeCCCC-C---CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEE
Q 045512 107 VKDKDIG-K---DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAV 162 (782)
Q Consensus 107 V~d~d~~-~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 162 (782)
|||++.. + +++||++.+++.++..... .....+||+|+.........|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998754 2 7999999999999976532 223678999987664443449998865
No 141
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.64 E-value=1.8e-15 Score=139.39 Aligned_cols=91 Identities=26% Similarity=0.333 Sum_probs=77.0
Q ss_pred ceEEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEE--GRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTV 270 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~--~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V 270 (782)
..+.|.|.|++|+||..++. .+.+||||++++.. .+.||+++++ +.||+|||.|.|.+... .+..|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEE
Confidence 34469999999999999883 34589999999974 2457888876 99999999999998643 256799999
Q ss_pred EEccCCCCCceeEEEEEeCCC
Q 045512 271 EDRIGPGKDEILGREFIPVRN 291 (782)
Q Consensus 271 ~d~d~~~~d~~lG~~~i~l~~ 291 (782)
||+|.++++++||++.+++..
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCCcCcceeceEEecCcC
Confidence 999999999999999999965
No 142
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.64 E-value=2.1e-15 Score=143.89 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=88.6
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC----CceEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITI 433 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i 433 (782)
...|.|.|+|++|+||++.+. .+. ||||++.+. ...+||++++++.||.|||.|.|.+..+ ...|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~---~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKS---GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCC---CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 467999999999999997753 366 999999882 3578999999999999999999986432 357999
Q ss_pred EEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 434 GVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 434 ~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
+|||++.++ +|++||++.+++.++.......+|+++.
T Consensus 101 ~V~d~d~~~------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 101 TVWDHDKLS------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEeCCCCC------CCceEEEEEEeCCccccCCCccccccCC
Confidence 999999876 7999999999999997766678899885
No 143
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=2.1e-15 Score=136.30 Aligned_cols=112 Identities=33% Similarity=0.505 Sum_probs=96.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
|+|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||.|||+|.|.+.......+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999998888999999999986 457999999999999999999998775568899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEE
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIML 160 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 160 (782)
++.+++.++..+.. ...|++|.+.++.. .|.|.+
T Consensus 81 ~~~~~l~~l~~~~~-----~~~~~~L~~~g~~~--~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEET-----TELTLPLDGQGGGK--LGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCCc-----EEEEEECcCCCCcc--CceEEc
Confidence 99999999987532 57899998765433 277653
No 144
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.63 E-value=4.6e-15 Score=136.41 Aligned_cols=119 Identities=24% Similarity=0.367 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCC
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKD 279 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d 279 (782)
.|+|+|++|++|+..+..+.+||||++.+++ +..+|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999989999999999864 4679999886 99999999999999876567899999999988899
Q ss_pred ceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccc
Q 045512 280 EILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAG 340 (782)
Q Consensus 280 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~ 340 (782)
++||++.++++.+... ++......|++|.+. |++++++++++.
T Consensus 81 ~~iG~~~i~l~~~~~~--~~~~~~~~w~~l~~~----------------g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFG--DDGLPREIWLDLDTQ----------------GRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcC--CCCCCceEEEEcCCC----------------CeEEEEEEEeee
Confidence 9999999999876532 214456789999753 889998887653
No 145
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.63 E-value=2.9e-15 Score=135.82 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=89.4
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEE
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN------LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTV 270 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V 270 (782)
+..+.|.|+|++|+||+..+..+.+||||++++.. ...+|+++++ +.||+|||+|.|.+... ....|.|+|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 34457999999999999998888999999999852 3688998886 99999999999998643 356899999
Q ss_pred EEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEc
Q 045512 271 EDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 271 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
||++..+++++||.+.|+|+++... .....+||+|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~----~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESS----EEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCC----CccccccccC
Confidence 9999889999999999999998632 2247789876
No 146
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=4.3e-15 Score=135.94 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=95.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
+|.|+|++|+ |...+..+.+||||+|+++++ .++|+++.+|.||+|||+|.|.+.. ...|.|+|||++.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555789999999999987 8999999999999999999999865 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC--CCcccceEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK--GDKITQGEIMLAV 162 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~ 162 (782)
|++.++|.++.............|++|..++ +.... |+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKV-GELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceee-eeEEEEe
Confidence 9999999999875432222233589997554 11233 9988764
No 147
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=3.7e-15 Score=135.16 Aligned_cols=104 Identities=23% Similarity=0.377 Sum_probs=92.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||+|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 478999999999999999999988764 47899999999998 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
||++.+++.++.... ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998762 367888887653
No 148
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.63 E-value=4.6e-15 Score=135.80 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=89.3
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~ 436 (782)
+..+.|.|.|++|+||++++. ..+. ||||++++. ....+|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 445789999999999998752 2355 999999983 3567999999999999999999998752 358999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++..+ .+++||++.++|+++........|++|.
T Consensus 89 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 7899999999999998888788999985
No 149
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=2.1e-15 Score=137.80 Aligned_cols=90 Identities=31% Similarity=0.519 Sum_probs=82.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
.|+|+|++|++|+..|..|.+||||+++++++. .+|+++++|.||+|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 379999999999999988999999999999864 5788899999999999999998766678999999999998 9999
Q ss_pred eEEEEEEccccCC
Q 045512 118 VGRVTFDLFEVPH 130 (782)
Q Consensus 118 lG~~~i~l~~l~~ 130 (782)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998875
No 150
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=1e-15 Score=142.55 Aligned_cols=118 Identities=30% Similarity=0.345 Sum_probs=100.0
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEeccC-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGIAKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~i~~t~nP~wne~f~f~~~~~- 98 (782)
|.+.+++.|+... +.|.|+|++|+||+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPTA--ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCCC--CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 4578888888754 689999999999999988899999999999652 66999999999999999999998653
Q ss_pred -CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 99 -QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 99 -~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
....|.|+|||.+.. ++++||++.+++.+ .+. ...+|++|....++
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~-----~~~~W~~l~~~~~~ 126 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGE-----ELEHWNEMLASPRK 126 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCc-----HHHHHHHHHhCCCC
Confidence 357899999999987 99999999999999 221 26789999876543
No 151
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=3.8e-15 Score=135.04 Aligned_cols=98 Identities=14% Similarity=0.264 Sum_probs=81.3
Q ss_pred eEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCC-CCeeccEEEEEeccC-CCC
Q 045512 29 TASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQ-NPVWNQIFAFSKERL-QSN 101 (782)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~-nP~wne~f~f~~~~~-~~~ 101 (782)
+++.| .+..+.|.|+|++|+||++.+..+.+||||+|++-+ .++||+++++|+ ||+|||+|.|++... ..-
T Consensus 5 ~sL~Y--~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 5 LGTCF--QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEeee--cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 44455 446779999999999999886677889999999842 378999999996 699999999998642 245
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEcccc
Q 045512 102 LVEVTVKDKDIG-KDDFVGRVTFDLFEV 128 (782)
Q Consensus 102 ~L~v~V~d~d~~-~d~~lG~~~i~l~~l 128 (782)
.|.|+|||++.. ++++||++.+.....
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 788999999988 999999999998763
No 152
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=2.5e-15 Score=137.97 Aligned_cols=112 Identities=26% Similarity=0.291 Sum_probs=93.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeecccc-CCCCCccccEEEEEEeCC-----CceEEEEEEeCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTIL-DTLDPRWNEQYTWEVYDP-----CTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~-~t~nP~wne~~~f~v~~~-----~~~l~i~V~d~~ 439 (782)
.|+|+|++|++|+..+. .+. ||||+|++++ ++.+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~---~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNL---FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCc---ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 37899999999997653 356 9999999988 889999986 589999999999999876 578999999998
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcE-----EEEEEEceeeCCCCCccccEEEE
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRL-----YTHYYPLLVLTPSGLKKNGELHL 491 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 491 (782)
.++ +|++||++.|+|.++..+.. ...||+|.... | +..|.|++
T Consensus 78 ~~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 765 79999999999999976543 46899998643 3 44688874
No 153
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.62 E-value=5e-15 Score=138.06 Aligned_cols=91 Identities=31% Similarity=0.545 Sum_probs=82.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
.|.|+|+|++|+||+..+ . +. ||||+++++++..+|++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d---~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD---F-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC---C-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 388999999999998654 2 45 9999999999999999999999999999999999998889999999999876
Q ss_pred CCCcCCCccEEEEEecccccCC
Q 045512 445 KDDAIDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
+|++||++.+++.++...
T Consensus 75 ----~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ----KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ----CCCEEEEEEEEHHHhhhh
Confidence 899999999999997543
No 154
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.62 E-value=4.2e-15 Score=137.19 Aligned_cols=89 Identities=26% Similarity=0.301 Sum_probs=77.2
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecC--CCCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~d 274 (782)
..|.|+|++|+||+..+..+.+||||++++.. .+.+|+++++ +.||+|||+|.|.+.. ..+..|.|+|||+|
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 36999999999999999889999999999952 2567888876 9999999999999864 33567999999999
Q ss_pred CCCCCceeEEEEEeCCC
Q 045512 275 GPGKDEILGREFIPVRN 291 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~ 291 (782)
..+++++||++.++...
T Consensus 94 ~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 EDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCeeEEEEECCCC
Confidence 99999999999998764
No 155
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=3.3e-15 Score=136.87 Aligned_cols=102 Identities=24% Similarity=0.340 Sum_probs=90.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC----CceEEEEEEeCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLDPRWNEQYTWEVYDP----CTVITIGVFDNCH 440 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~-t~nP~wne~~~f~v~~~----~~~l~i~V~d~~~ 440 (782)
|.|+|.|++|+||++.+. .+. ||||+++++++..+|+++++ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~---~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF---LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCC---CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 689999999999997653 356 99999999999999999875 89999999999999876 4689999999998
Q ss_pred CCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
++ +|++||++.+++.++..+.....|++|..
T Consensus 78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999987777789999875
No 156
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.62 E-value=3.9e-15 Score=135.12 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=81.8
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeCC
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD--PCTVITIGVFDNC 439 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~--~~~~l~i~V~d~~ 439 (782)
....|.|+|+|++|+||+. + ..+. ||||+|+++++.+||++++++.||+|||+|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d---~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-D---YFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-C---cCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4567999999999999973 2 3456 999999999999999999999999999999998543 3679999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCC
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
.++ +|++||++.++|.....+
T Consensus 100 ~~s------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC------CCCeeEEEEEEecCCcee
Confidence 876 899999999999977654
No 157
>PLN03008 Phospholipase D delta
Probab=99.61 E-value=3.2e-15 Score=169.02 Aligned_cols=104 Identities=20% Similarity=0.402 Sum_probs=92.1
Q ss_pred CC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCC
Q 045512 389 LT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 389 ~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
++ ||||+|.++++ ..||++++++.||+|||+|.|.+.++...|+|+|+|+|.++ +++||++.|+|.++..|
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-------aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-------AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-------CceeEEEEEEHHHcCCC
Confidence 35 99999999876 56999999999999999999999998889999999999884 58999999999999999
Q ss_pred cEEEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 467 RLYTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 467 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
+..+.|++|.....+-.+..|+|+++++|.+..
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 999999999986554444568999999997753
No 158
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=7.7e-15 Score=133.08 Aligned_cols=112 Identities=28% Similarity=0.443 Sum_probs=88.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccC--CCCeEEEEEEeCCCC-CCce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERL--QSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~--~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|++|+||+.. |.+||||+++++++ .++|+++.+ .||+|||+|.|.+... ....|.|.+||.+.. ++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 579999999 9999999999998653 235688888888876 6777
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+|.+.++. +..+. ...+||+|.+.++.....|+|++.++|
T Consensus 78 ~g~v~l~~--~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDLGQ-----GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCCCC-----cceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766554 33322 267999998766543335999998864
No 159
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=4.5e-15 Score=134.60 Aligned_cols=102 Identities=30% Similarity=0.328 Sum_probs=89.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
|.|+|.|++|+||++.+. .+. ||||++++++ ...+|++++++.||.|||.|.|++..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~---~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG---VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCccC---CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 689999999999997653 356 9999999977 568999999999999999999999887789999999999876
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
+|++||++.+++.++..+ ..+.||-|.+.
T Consensus 76 ----~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ----KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ----CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999876 45789988763
No 160
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=8.6e-15 Score=133.93 Aligned_cols=106 Identities=26% Similarity=0.392 Sum_probs=91.4
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEE-ec--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~-~~-- 96 (782)
|...+++.|+.. .+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|. +.
T Consensus 2 G~~~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDPA--NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 567888888885 468999999999999998889999999999842 46899999999999999999996 32
Q ss_pred cCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCC
Q 045512 97 RLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRV 132 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~ 132 (782)
+.....|.|+|||++..++++||++.+++.++..+.
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 233578999999998778899999999999998754
No 161
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=1e-14 Score=131.86 Aligned_cols=111 Identities=30% Similarity=0.383 Sum_probs=93.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~~~~~ 445 (782)
|+|+|++|++|+..+. .+. ||||++.+++ +.++|+++.++.||.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~---~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSADR---NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCCCC---CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 5789999999997653 356 9999999975 45899999999999999999999986 4678999999999765
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHL 491 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 491 (782)
++++||++.+++.++..+.....|++|.. +|..+.|.+.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred ---CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 79999999999999998888899999975 34445577654
No 162
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.59 E-value=4.3e-15 Score=133.06 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=87.7
Q ss_pred EEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCC---CCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEG-RAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEP---FEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~d 274 (782)
|.|+|+|++|++|+..+.. +.+||||++.+.+ ...+|+++++ +.||.|||.|.|.+... ....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 4799999999999999987 8999999999853 4679999887 99999999999987654 3467999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..++|++||++.++++++.. ...|+++...
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~--------~~~~~~~~~~ 109 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE--------DRNWMGRRED 109 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc--------CCCCCccccc
Confidence 99999999999999999873 4567777643
No 163
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=1.1e-14 Score=134.86 Aligned_cols=102 Identities=28% Similarity=0.398 Sum_probs=87.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~V~d~ 438 (782)
+.|+|+|++|++|+..+. .+. ||||+|.+.+ ...+|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~~---~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMDP---NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCcCC---CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 689999999999997643 356 9999999963 678999999999999999999998753 46899999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
+..+ ++++||++.++|+++... ....||+|.+.
T Consensus 90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8765 789999999999999755 56789999864
No 164
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.59 E-value=2.5e-14 Score=131.98 Aligned_cols=117 Identities=28% Similarity=0.477 Sum_probs=98.5
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeccccCCC-CCeeccEEEEEeccCCCCeEEEEEEeC
Q 045512 40 HYLFVNVVKARNLPVMD--VSGSLDPYVEVKLG------NYKGIAKHLEKNQ-NPVWNQIFAFSKERLQSNLVEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~i~~t~-nP~wne~f~f~~~~~~~~~L~v~V~d~ 110 (782)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 57899999999994 4568999988776 999999999998766567899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 111 DIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 111 d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+..++++||++.+++.++..+ ..|++|.+..|.....|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 887899999999999999542 3689998887764334899888764
No 165
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.6e-14 Score=130.95 Aligned_cols=111 Identities=30% Similarity=0.487 Sum_probs=86.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~ 443 (782)
|+|+|++|+||+.. +. ||||+++++++ ..+|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 45 99999999885 479999999 9999999999999863 346888888877543
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++..+|++.|. .+..+.....||+|...+.. .+..|+|+|+++|
T Consensus 74 -----~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 74 -----RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred -----CeeEEEEEEec--CcCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 56667765554 45556677999999875542 3457999999865
No 166
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=6.7e-15 Score=136.63 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=88.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC----CEEEeeccccCCCCCccccEEEEEEeCC----------------
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYG----NKWIRTRTILDTLDPRWNEQYTWEVYDP---------------- 427 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~----~~~~~T~~~~~t~nP~wne~~~f~v~~~---------------- 427 (782)
|+|.|++|+||+.+ . .+. ||||+++++ +...+|++++++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999865 2 356 999999998 7789999999999999999999998864
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCC
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 480 (782)
...|.|+|||++..+ ++++||++.+++.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 348999999999765 79999999999999987777899999987654
No 167
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.58 E-value=2e-14 Score=130.39 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=77.3
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCC-CCcccceeEEEecCCCC-CeEEEEEE
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSV-NPVWNEEHMFVASEPFE-DLIIVTVE 271 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~-nP~wne~f~f~v~~~~~-~~L~i~V~ 271 (782)
|..+.|+|+|++|+||+.+...+.+||||+|.+.. .+.||+++++ +. ||.|||+|.|.+..... -.+.|+||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 45567999999999999987667789999998852 4678888876 74 69999999999975433 35888999
Q ss_pred EccCCCCCceeEEEEEeCCCc
Q 045512 272 DRIGPGKDEILGREFIPVRNV 292 (782)
Q Consensus 272 d~d~~~~d~~lG~~~i~l~~l 292 (782)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 999888999999999999764
No 168
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.58 E-value=3.4e-14 Score=131.37 Aligned_cols=117 Identities=20% Similarity=0.330 Sum_probs=96.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC-C---
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-G--- 113 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~-~--- 113 (782)
...|.|.|++|++|++++ +|||++.+++++ .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccccc
Confidence 347999999999999876 899999999986 5999999999999999999975443 4679999976543 2
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc--------ccceEEEEEEEEcc
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK--------ITQGEIMLAVWIGT 166 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~ 166 (782)
++++||.+.|++.++..+. ..+.||+|.+.++.. ...+.|++++.|..
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 5799999999999998643 378999999877553 33379999998863
No 169
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.57 E-value=7.8e-15 Score=136.63 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=85.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V 435 (782)
..+.|.|.|++|+||+..+. .|. ||||++.+. + .+.||++++++.||.|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~---~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDV---SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc---CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34789999999999997653 366 999999983 2 25789999999999999999999874 345799999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
||++.++ ++++||++.+++... +....+|++|..
T Consensus 90 ~d~d~~~------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 90 LDSDRVT------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EECCCCC------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 9999876 899999999999983 445688998864
No 170
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.57 E-value=2e-14 Score=133.96 Aligned_cols=105 Identities=26% Similarity=0.323 Sum_probs=85.1
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d 272 (782)
..+.|+|+|++|++|+..+..+.+||||++.+++ ...+|+++++ +.||.|||+|.|.+.... ...|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 4457999999999999999999999999999952 3567888776 999999999999985432 3479999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.+++..... ...+|+++...
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~ 124 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLAS 124 (136)
T ss_pred CCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhC
Confidence 9999999999999999976421 24566665443
No 171
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.8e-15 Score=150.96 Aligned_cols=227 Identities=18% Similarity=0.226 Sum_probs=174.0
Q ss_pred CceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEe---cc
Q 045512 26 GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSK---ER 97 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~---~~ 97 (782)
.-++...|+-.. ..+..+|.+|++|.+++.++..|||++..++. .+.+|++..+++||+|||+-.+.- ++
T Consensus 81 ~~~~~~~y~~~~--~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~ 158 (362)
T KOG1013|consen 81 ALEFELLYDSES--RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDD 158 (362)
T ss_pred chhhhhhhhhhh--hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccch
Confidence 345666666544 47899999999999999999999999999975 367899999999999999977652 22
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC----c-ccceEEEEEEEEcccCCcc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD----K-ITQGEIMLAVWIGTQADES 171 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~----~-~~~G~l~l~~~~~~~~d~~ 171 (782)
.....+++.|.|.+.+ .++++|+..+++..|...... ....|+.-..+.+. . ...|+|.+++-+.++
T Consensus 159 ~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k---~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~---- 231 (362)
T KOG1013|consen 159 THLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRK---SFNICLEKSLPSERADRDEDEERGAILISLAYSST---- 231 (362)
T ss_pred hhhhhhheeeccCcccccccCcccchhhhhccChhhcc---hhhhhhhccCCcccccccchhhccceeeeeccCcC----
Confidence 3356789999999998 899999999999988765431 23444443333111 0 223777777644321
Q ss_pred ccccccccccccccccccccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCC
Q 045512 172 FSEAWHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSV 246 (782)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~ 246 (782)
...+.|+++.|.+|..+|.++.+||||..++.. .+.+|.+.++ +.
T Consensus 232 -----------------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~ 281 (362)
T KOG1013|consen 232 -----------------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TL 281 (362)
T ss_pred -----------------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cC
Confidence 124789999999999999999999999999863 3567777776 99
Q ss_pred CCcccceeEEEecCC--CCCeEEEEEEEccCCCCCceeEEEEEeCCC
Q 045512 247 NPVWNEEHMFVASEP--FEDLIIVTVEDRIGPGKDEILGREFIPVRN 291 (782)
Q Consensus 247 nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 291 (782)
+|.|++.|.|.+... ....+.|+|||++..+..+++|-+...+..
T Consensus 282 ~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 282 NPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred CccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 999999999987532 345799999999988899999987776543
No 172
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.7e-14 Score=129.11 Aligned_cols=100 Identities=27% Similarity=0.434 Sum_probs=85.5
Q ss_pred CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCC
Q 045512 57 VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPD 135 (782)
Q Consensus 57 ~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~ 135 (782)
.+|.+||||+|+++++ ..+|+++.++.||+|||.|.|.+.+.....|.|.|+|.+..++++||++.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4789999999999985 679999999999999999999998766788999999999888999999999999996532
Q ss_pred CCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 136 SPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 136 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
....+||+|.+. . .|+|++++.|.
T Consensus 86 -~~~~~w~~L~~~--~---~G~i~~~~~~~ 109 (111)
T cd04052 86 -SVGQQWFPLSGN--G---QGRIRISALWK 109 (111)
T ss_pred -hccceeEECCCC--C---CCEEEEEEEEe
Confidence 125799999852 2 29999998765
No 173
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=4.2e-14 Score=129.36 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=91.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
.|+|+|++|+ |...+ ..+. ||||+++++++ ..+|++++++.||.|||.|.|.+.. ...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~~---~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSNS---KSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCCC---cCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCC---
Confidence 5899999998 54433 2355 99999999987 8999999999999999999999864 578999999999876
Q ss_pred CCcCCCccEEEEEecccccCCc---E--EEEEEEceeeCCCCCccccEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDR---L--YTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
.|++||++.++|+++..+. . ...|++|........+..|+|++++
T Consensus 75 ---~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ---ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 8999999999999986432 1 3458888754321224569998874
No 174
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.56 E-value=4.1e-14 Score=131.86 Aligned_cols=91 Identities=23% Similarity=0.358 Sum_probs=78.5
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--N---LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 273 (782)
.+.|.|+|++|++|+..+..+.+||||++.+. + ...+|+++++ +.||.|||.|.|.+... .+..|.|+|||+
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 34699999999999999988999999999983 2 3568888886 99999999999987532 345799999999
Q ss_pred cCCCCCceeEEEEEeCCCc
Q 045512 274 IGPGKDEILGREFIPVRNV 292 (782)
Q Consensus 274 d~~~~d~~lG~~~i~l~~l 292 (782)
+..+++++||++.+++.+.
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9999999999999999875
No 175
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.56 E-value=3.2e-14 Score=132.02 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=84.3
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 272 (782)
..+.|+|+|++|++|+..+..|.+||||++.+.. +..+|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 3457999999999999999889999999999832 3568888876 99999999999998532 23469999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.++...... ....+|+.+...
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~ 124 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNS 124 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhC
Confidence 9999999999999877643331 124667776654
No 176
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.56 E-value=2.3e-14 Score=134.25 Aligned_cols=102 Identities=28% Similarity=0.519 Sum_probs=88.8
Q ss_pred cCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eeeecccccCCCCC
Q 045512 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----------------------------LVRVTRPSHVRSVN 247 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----------------------------~~~kT~~~~~~t~n 247 (782)
..|..+.|+|+|++|++|...|..|.+||||++.++. +.++|+++++ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 4578999999999999999999999999999999863 2367888876 999
Q ss_pred CcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEc
Q 045512 248 PVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 248 P~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
|.|||+|.|.+.......|.|+|||++ +++||++.++++++... ..+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 999999999997766778999999997 88999999999998732 36899986
No 177
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.55 E-value=2.6e-15 Score=153.90 Aligned_cols=106 Identities=32% Similarity=0.557 Sum_probs=93.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC-CCCeEEEEEEeCC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL-QSNLVEVTVKDKD 111 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~-~~~~L~v~V~d~d 111 (782)
....|.|+|.+|+||.++|.+|.|||||++++-+ .+.+|++++.|+||+|||+|.|.+... ....|.|+|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 3458999999999999999999999999999953 377999999999999999999997543 3578999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 112 IG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+. ++||+|+.++.+++|.... ..-||.|....
T Consensus 258 rTsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred ccccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 99 9999999999999998754 67899997654
No 178
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=3.1e-14 Score=129.54 Aligned_cols=98 Identities=23% Similarity=0.227 Sum_probs=83.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC----C
Q 045512 45 NVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI----G 113 (782)
Q Consensus 45 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~----~ 113 (782)
-.++|++|+..+..|.+||||+|++.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3488999999998899999999999765 4899999999999999999998654446789999999996 6
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
++++||++.+++.++..... ...|++|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG-----QKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC-----cEEEEEccC
Confidence 99999999999999986542 456788843
No 179
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=4.2e-14 Score=126.61 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=82.4
Q ss_pred CCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccc
Q 045512 387 GKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL 463 (782)
Q Consensus 387 ~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
..|. ||||+|+++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ +|++||++.++|+++
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-------~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-------HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-------CCCeEEEEEecHHHH
Confidence 3466 99999999885 57999999999999999999999875 56899999999864 589999999999998
Q ss_pred cC-CcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 464 ET-DRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 464 ~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
.. +.....||+|.+ ++.|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 54 344578999974 34699999988754
No 180
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.54 E-value=5.9e-14 Score=130.05 Aligned_cols=92 Identities=25% Similarity=0.439 Sum_probs=81.5
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeeeecccccCCCCCCcccceeEEEecCC----CCCeEEEEE
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG-------NLVRVTRPSHVRSVNPVWNEEHMFVASEP----FEDLIIVTV 270 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-------~~~~kT~~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V 270 (782)
..|+|+|++|++|+..+..+.+||||++.+. ...++|+++++ +.||.|||+|.|.+... ....|.|+|
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 3699999999999999888999999999996 34789999987 99999999999998653 245799999
Q ss_pred EEccCCCCCceeEEEEEeCCCccc
Q 045512 271 EDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 271 ~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
||++..+++++||++.++|+++..
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999999999999999998874
No 181
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.53 E-value=6.8e-14 Score=129.97 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=83.9
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d 272 (782)
..+.|+|+|++|++|+..+..|.+||||++.+.. ...+|+++++ +.||.|||.|.|.+.... ...|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 3457999999999999999999999999999852 3567888775 999999999999875432 3469999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.+++.... .....|+++...
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~ 123 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNADG-------QGREHWNEMLAN 123 (134)
T ss_pred CCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHC
Confidence 999999999999999987322 124567665443
No 182
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=6.7e-14 Score=129.89 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=84.9
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN------LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 272 (782)
.+.|.|+|++|+||+..+..+.+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 346999999999999999989999999999952 2468888876 99999999999998643 34589999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
++..+++++||++.+++...... ...+|+.+..
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~ 125 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKE 125 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHh
Confidence 99999999999999998754321 2356766644
No 183
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.53 E-value=1.1e-13 Score=128.76 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=75.9
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 274 (782)
+.|.|+|++|+||+..+ .+.+||||++.+.. .+.+|+++++ +.||.|||.|.|.+... ....|.|+|||.+
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 46999999999999888 77899999999863 3568888776 99999999999998532 3457999999999
Q ss_pred CCCCCceeEEEEEeCCCc
Q 045512 275 GPGKDEILGREFIPVRNV 292 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l 292 (782)
..+++++||++.++....
T Consensus 93 ~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCCcceEEEEEECCccc
Confidence 989999999999996543
No 184
>PLN03008 Phospholipase D delta
Probab=99.52 E-value=6.8e-14 Score=158.36 Aligned_cols=124 Identities=23% Similarity=0.391 Sum_probs=104.8
Q ss_pred cEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeee
Q 045512 40 HYLFVNVVKARNLPVMDV------------------------------------------SGSLDPYVEVKLGNY-KGIA 76 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~T 76 (782)
|.|.|+|.+|++|+.+|. .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 688999999999986321 247899999999886 5699
Q ss_pred ccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcc-cc
Q 045512 77 KHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI-TQ 155 (782)
Q Consensus 77 ~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~~ 155 (782)
++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.|++.++..+.. ...|++|.+..++.. ..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~-----vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER-----ISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc-----eEEEEEccccCCCCCCCC
Confidence 9999999999999999999885 4689999999999988999999999999988653 679999998876643 23
Q ss_pred eEEEEEEEEcccCC
Q 045512 156 GEIMLAVWIGTQAD 169 (782)
Q Consensus 156 G~l~l~~~~~~~~d 169 (782)
|+|++++.|.....
T Consensus 168 ~kl~v~lqf~pv~~ 181 (868)
T PLN03008 168 TAIFIDMKFTPFDQ 181 (868)
T ss_pred cEEEEEEEEEEccc
Confidence 79999999876543
No 185
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.52 E-value=1.1e-13 Score=128.40 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 272 (782)
..+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 4457999999999999999889999999999963 4678998886 99999999999998643 34579999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.++++... ....+|+++...
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKN 122 (133)
T ss_pred CCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhC
Confidence 998889999999999997522 125678876543
No 186
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=3.3e-14 Score=175.61 Aligned_cols=117 Identities=23% Similarity=0.427 Sum_probs=100.5
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC--ceEEEEEEeCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPC--TVITIGVFDNC 439 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~--~~l~i~V~d~~ 439 (782)
.-.|.|.|+|++|+||. . + .++ ||||++.+|++ +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-~---~-~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-Q---S-MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-c---c-cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 45799999999999997 2 2 245 99999999965 889999999999999999999999864 67999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccE---EEEEEEEE
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGE---LHLALRFT 496 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~~~ 496 (782)
.++ ++.||++.|++.++..++.++.||+|... | +|.|+ |+++++|+
T Consensus 2052 ~f~-------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG-------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC-------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 874 55999999999999999999999999842 2 45577 88887763
No 187
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.51 E-value=1.4e-14 Score=148.63 Aligned_cols=104 Identities=24% Similarity=0.430 Sum_probs=92.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC-CCeEEEEEEEccCC
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF-EDLIIVTVEDRIGP 276 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~V~d~d~~ 276 (782)
.|+|+|.+|+||.++|.+|.+||||++.+-. .+++|++++. ++||+|||+|.|.+.... +.+|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 5999999999999999999999999999952 4788999997 999999999999986543 55799999999999
Q ss_pred CCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCC
Q 045512 277 GKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313 (782)
Q Consensus 277 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 313 (782)
++++++|..++.+++|++. ..+.||.|-.+.
T Consensus 260 sRNDFMGslSFgisEl~K~------p~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA------PVDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhc------chhhHHHHhhhh
Confidence 9999999999999999965 378899887764
No 188
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=1.1e-13 Score=122.00 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=68.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeC------
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDK------ 110 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~------ 110 (782)
|.|+|++|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999996 5589999999964 35899999999999999999999874 67999999998
Q ss_pred -CCC-CCceeEEEEEEccc
Q 045512 111 -DIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 111 -d~~-~d~~lG~~~i~l~~ 127 (782)
|.. +|+++|++.+.|..
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 345 89999888887653
No 189
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=2.5e-13 Score=119.59 Aligned_cols=85 Identities=26% Similarity=0.475 Sum_probs=66.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC-C
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCH-V 441 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~-~ 441 (782)
|.|+|++|+||+ +. ||||++.+.+ .+.||+++++|+||+|||+|+|++.. ...|.+.|||++. .
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 578999999996 34 9999999853 46899999999999999999999975 6799999999831 0
Q ss_pred CCCCCCcCCCccEEEEEeccc
Q 045512 442 NGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~ 462 (782)
...+..++|+++|++.|.|+.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccCcccEEEEEEEEECH
Confidence 000112389999888777654
No 190
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.49 E-value=3.4e-13 Score=124.31 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=93.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eeeecccccCCCCCCcc-cceeEEEecCCCCCeEEE
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-------------LVRVTRPSHVRSVNPVW-NEEHMFVASEPFEDLIIV 268 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-------------~~~kT~~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i 268 (782)
.+.|++++|++|+ .+..|++||||++.+.. +.++|+++++ +.||.| ||.|.|.+. ..+.|.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~--~~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGL--PTDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcC--CCCEEEE
Confidence 3679999999998 67789999999999952 3689999986 999999 999999985 3568999
Q ss_pred EEEEccCCCC---CceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEE
Q 045512 269 TVEDRIGPGK---DEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRF 335 (782)
Q Consensus 269 ~V~d~d~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v 335 (782)
+|||++..++ +++||++.++++++... ........||+|.... .....+|+|.+++
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~--~~~~~~~~~~~l~k~~---------~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLER--HAIGDQELSYTLGRRT---------PTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhccc--ccCCceEEEEECCcCC---------CCCcEEEEEEEEe
Confidence 9999875433 79999999999999864 2333467899988653 2345567777654
No 191
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=5e-13 Score=123.25 Aligned_cols=116 Identities=21% Similarity=0.325 Sum_probs=92.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE------CCEEEeeccccCCC-CCccccEEEEEEeCCC-ceEEEEEEeC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKY------GNKWIRTRTILDTL-DPRWNEQYTWEVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~------~~~~~~T~~~~~t~-nP~wne~~~f~v~~~~-~~l~i~V~d~ 438 (782)
.|+|+|++|+||+.++. +..+. ||||++++ .....||+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999997652 12355 99999999 34668999988776 9999999999998654 4799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+.. +|++||++.++++++..+. +|++|....... ...|.|.+.+++
T Consensus 82 ~~~-------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCC-------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 853 6899999999999997663 688987654321 234888888765
No 192
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=4.4e-13 Score=122.59 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=80.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V 435 (782)
.+.|+|+|++|++|++.+. .+. ||||++.+. ....||++++++.||.|||.|.|..... ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~---~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDA---NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCCCC---CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 4789999999999997653 356 999999983 2468999999999999999999974432 45899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYY 473 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 473 (782)
||++.+ .+++||++.++|++|..++....|+
T Consensus 91 ~d~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRF-------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCc-------CCeeEEEEEEEcccCCCCcceEeec
Confidence 999864 5889999999999998877444444
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.49 E-value=1.5e-13 Score=124.99 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=81.6
Q ss_pred EEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC--
Q 045512 372 GILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCH-- 440 (782)
Q Consensus 372 ~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~-- 440 (782)
..++|++|++.+. .|. ||||++++.+. ..||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~---~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDV---LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCC---CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 3478999997754 356 99999999654 4899999999999999999998653 45689999999996
Q ss_pred --CCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 441 --VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 441 --~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
.+ +|++||++.+++++|..+.....|++|..
T Consensus 82 ~~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 54 89999999999999987776778999853
No 194
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.48 E-value=3.1e-13 Score=125.79 Aligned_cols=103 Identities=26% Similarity=0.383 Sum_probs=87.8
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~d 274 (782)
+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|+++.+ +.||.|||+|.|.+.... ...|.|+|||.+
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 46999999999999998888999999999864 2568888886 999999999999986543 567999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..+++++||++.+++++ .. ...++|++|...
T Consensus 93 ~~~~~~~lG~~~i~l~~-~~------~~~~~W~~l~~~ 123 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS-GG------EELEHWNEMLAS 123 (134)
T ss_pred CCCCCceeEEEEECCCC-CC------cHHHHHHHHHhC
Confidence 88899999999999998 32 236788888765
No 195
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=3e-13 Score=123.52 Aligned_cols=89 Identities=26% Similarity=0.421 Sum_probs=80.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCee--eecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEI 281 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~ 281 (782)
|+|.|++|++|+..+..+.+||||++.++++. .+|+++++ +.||.|||+|.|.+..+....|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 78999999999999999999999999999865 46777776 9999999999999877767889999999999999999
Q ss_pred eEEEEEeCCCcc
Q 045512 282 LGREFIPVRNVP 293 (782)
Q Consensus 282 lG~~~i~l~~l~ 293 (782)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998765
No 196
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.46 E-value=1.8e-13 Score=169.27 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=99.9
Q ss_pred ccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCC-CCeEEEEEEeCCC
Q 045512 35 LVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQ-SNLVEVTVKDKDI 112 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~-~~~L~v~V~d~d~ 112 (782)
+..-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||.|.|.++++. +..|+|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3446799999999999998 33799999999999965 889999999999999999999988864 4679999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceE---EEEEE
Q 045512 113 GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGE---IMLAV 162 (782)
Q Consensus 113 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~ 162 (782)
++++.||++.|++.++..++. ...||+|.+..++. |. |.+.+
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k~---G~~~~~~~e~ 2097 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNKD---GSSRTLEIEF 2097 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCce-----eeeeeecCcccccC---CCcceEEEEE
Confidence 966699999999999987653 67899998643222 66 77776
No 197
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=3.6e-13 Score=120.60 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=76.1
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeccccCCCCCeeccEEEEEeccCC----CCeEEEEEEeCCC
Q 045512 43 FVNVVKARNLPVMDVSGSLDPYVEVKLGNY------KGIAKHLEKNQNPVWNQIFAFSKERLQ----SNLVEVTVKDKDI 112 (782)
Q Consensus 43 ~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~i~~t~nP~wne~f~f~~~~~~----~~~L~v~V~d~d~ 112 (782)
.+-.++|++|+..|..|.+||||+|++.+. .++|+++++++||+|| +|.|....+. ...|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998653 5899999999999999 7888765432 5789999999999
Q ss_pred C-CCceeEEEEEEccccCCC
Q 045512 113 G-KDDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~ 131 (782)
. +|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 8 999999999999999854
No 198
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.2e-13 Score=145.26 Aligned_cols=120 Identities=28% Similarity=0.522 Sum_probs=105.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC--------
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-------- 112 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~-------- 112 (782)
.+.++|+.|.+|.++|..|++||||.+.+|..+.+|++|...+||+|||.|.|..+.. +..+.+.|||.|.
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999884 6889999999985
Q ss_pred -C---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccC
Q 045512 113 -G---KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQA 168 (782)
Q Consensus 113 -~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (782)
. +|||+|+..|.+..|... .+.||.|+....++...|.|++.+.+...+
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 1 789999999999888643 678999998876665568888887665433
No 199
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.42 E-value=8.9e-13 Score=111.80 Aligned_cols=81 Identities=38% Similarity=0.578 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|++|+||+..+..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.......|.|+|||++.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 569999999999999999999998776677799999999999 7999
Q ss_pred eEEEE
Q 045512 118 VGRVT 122 (782)
Q Consensus 118 lG~~~ 122 (782)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.37 E-value=2.4e-12 Score=115.19 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=74.1
Q ss_pred EEEEeeCCCCCCCCCCCCC-CcEEEEEECCE------EEeeccccCCCCCccccEEEEEEeC-----CCceEEEEEEeCC
Q 045512 372 GILSAKNLMPMTSKDGKLT-DAYCVAKYGNK------WIRTRTILDTLDPRWNEQYTWEVYD-----PCTVITIGVFDNC 439 (782)
Q Consensus 372 ~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~------~~~T~~~~~t~nP~wne~~~f~v~~-----~~~~l~i~V~d~~ 439 (782)
..++|++|+.++. .|. ||||++++.+. .++|+++++++||+|| .|.|++.+ +...|.|+|||++
T Consensus 5 ~~i~a~~L~~~d~---~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 5 LQFSGKKLDKKDF---FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEeCCCCCCCC---CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 4579999997764 356 99999998542 5899999999999999 78887642 2568999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
..+ +|++||++.+++++|..++ .+++.+
T Consensus 81 ~~~------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 81 SSG------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCC------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 876 8999999999999998554 344443
No 201
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.2e-12 Score=131.02 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=164.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEe--cCC-CCCeEEEEEEEcc
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVA--SEP-FEDLIIVTVEDRI 274 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v--~~~-~~~~L~i~V~d~d 274 (782)
.+..+|..|++|..++.++..|||++..++. .+++|++..+ +.||.|+|...+.. .+. ....+++.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 5789999999999999999999999999973 4578888876 99999999865543 222 2345888999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDL 354 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~ 354 (782)
.+...+++|+..+.+..+..++ +.....|+.-.-+.. .....+.+..|.+.+++.++
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q---~k~f~~cl~~~lp~~----rad~~~~E~rg~i~isl~~~---------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQ---RKSFNICLEKSLPSE----RADRDEDEERGAILISLAYS---------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhh---cchhhhhhhccCCcc----cccccchhhccceeeeeccC----------------
Confidence 9989999999999888877543 223445544333310 00011134557766665322
Q ss_pred CccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC-
Q 045512 355 QPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDP- 427 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~- 427 (782)
....-+.|.+++|..|..+|+ +|- ||||..++.. .+.+|.+.+++++|.||++|.|.+...
T Consensus 230 ---------s~~~~l~vt~iRc~~l~ssDs---ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgd 297 (362)
T KOG1013|consen 230 ---------STTPGLIVTIIRCSHLASSDS---NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGD 297 (362)
T ss_pred ---------cCCCceEEEEEEeeeeecccc---CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccc
Confidence 223457889999999998765 355 9999999853 247999999999999999999998742
Q ss_pred --CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEE
Q 045512 428 --CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYP 474 (782)
Q Consensus 428 --~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 474 (782)
...+.|.|+|.+.- .+.+++|-+...+... +....+|+.
T Consensus 298 La~~kv~lsvgd~~~G------~s~d~~GG~~~g~~rr--~~v~~h~gr 338 (362)
T KOG1013|consen 298 LAYKKVALSVGDYDIG------KSNDSIGGSMLGGYRR--GEVHKHWGR 338 (362)
T ss_pred hhcceEEEeecccCCC------cCccCCCccccccccc--chhhcCccc
Confidence 44899999998852 3678888877665443 333455554
No 202
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.31 E-value=5.2e-12 Score=142.33 Aligned_cols=257 Identities=23% Similarity=0.260 Sum_probs=165.9
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~- 113 (782)
+....++|.|++|-+|.+.|.+|.+||||++.+|++. -++..+.+|+||+|++.|.+....+....+.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 3455778999999999999999999999999999875 6788999999999999999998888888999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC-------------------CCc--ccceEEEEEEEEcccCC---
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK-------------------GDK--ITQGEIMLAVWIGTQAD--- 169 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-------------------~~~--~~~G~l~l~~~~~~~~d--- 169 (782)
+|+.||+..++|.+-............+-|.....+ +.+ .-.++. ..+.+....+
T Consensus 690 ~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d 768 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYD 768 (1105)
T ss_pred ccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhc
Confidence 899999999999865432221122233333332221 100 001111 1222221111
Q ss_pred ---------cccccccc----------------ccc--------ccccccc------------ccccccccccCCceEEE
Q 045512 170 ---------ESFSEAWH----------------SDA--------HNISQTN------------LANTISKVYFSPKLYYL 204 (782)
Q Consensus 170 ---------~~~~~~~~----------------~~~--------~~~~~~~------------~~~~~~~~~~~p~~~~L 204 (782)
......|. ... ++..... -+..-..-.++|..+.+
T Consensus 769 ~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~l 848 (1105)
T KOG1326|consen 769 EKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYEL 848 (1105)
T ss_pred ccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeE
Confidence 00000000 000 0000000 00000112345677889
Q ss_pred EEEEEEeeCCCCCCCC----CCCCcEEEEEECC---eeeecccccC---CCCCCcccceeEEEecC--------------
Q 045512 205 RVFVFEAQDLVPSEEG----RAPDAYVKIQLGN---LVRVTRPSHV---RSVNPVWNEEHMFVASE-------------- 260 (782)
Q Consensus 205 ~V~V~~a~~L~~~d~~----g~~dpyv~v~lg~---~~~kT~~~~~---~t~nP~wne~f~f~v~~-------------- 260 (782)
+|.|..-.++...|.. ..+|.||+-.+-+ ++++|.+.++ +-.|-.|.-.|.|....
T Consensus 849 rviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~w 928 (1105)
T KOG1326|consen 849 RVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSW 928 (1105)
T ss_pred EEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcc
Confidence 9999988887765543 3589999987753 4566665443 24456676555553210
Q ss_pred -------CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 045512 261 -------PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 261 -------~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
.....|.|+|||.|.+++|++||..+++|+++..
T Consensus 929 s~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~ 969 (1105)
T KOG1326|consen 929 SLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPA 969 (1105)
T ss_pred ccccccccCchheEEEecccCccChhhhhhheeechhhCcC
Confidence 0023699999999999999999999999998874
No 203
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.30 E-value=1.9e-11 Score=133.19 Aligned_cols=175 Identities=24% Similarity=0.364 Sum_probs=119.2
Q ss_pred eeeecchhhHHHHHHHHHH---HHH---HHhhhccccCCchhhHHHHHHHHHHHHcCch--h-HHHHHHHHHHHHhhccc
Q 045512 563 MWSLRKSKANFQRIMELFS---AIC---RWFNDICTWRNPVETVLLHVLFLILVFYPEL--I-LPTIFLYLFLIGMWNYR 633 (782)
Q Consensus 563 ~~s~~~~~~n~~rl~~~~~---~~~---~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~-~p~~~l~l~~~~~~~~~ 633 (782)
.+|+..+..|+.|+...+. .++ +.+.++++|++|..|+.++++|+++|++|.+ + +|++++ ++++++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3577788999999999888 566 9999999999999999999999999999988 3 565554 3445555555
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCCcccccccCCCCCCCChHHHHHHHHHHHHhHhhHHHHHHHHhhHHHHHhh
Q 045512 634 FRPRHPPQVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQA 713 (782)
Q Consensus 634 ~~~~~p~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~ 713 (782)
.++..+.. .... . ..+.+.+.+..|+-.+. -++-+.+|++ +||.|+.+.+.++.+..
T Consensus 81 ~~~p~~~~--~~~~-----~----------~~~~~~~~~~~ptl~~~--s~e~~~nL~d----lQn~m~~~~~~~d~~~~ 137 (359)
T PF06398_consen 81 YRHPSPTS--SLPK-----S----------YEDHNPEPSEGPTLDKP--SREIVMNLRD----LQNKMEDLSDPYDFLSS 137 (359)
T ss_pred eecCCCcc--cccc-----c----------ccccCCCcCCCCCcchh--HHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 55422111 0000 0 00111111111111100 2344555555 88888888888888875
Q ss_pred ----hhcccCchhHHHHHHHHHHHHHHH----hhhhhhhhHhhhhhh-hccCCCCCC
Q 045512 714 ----ILCWRDLRATFIFLIFSFIWAVFS----YVTPFQVVAVLIGLY-MLRHPRFRS 761 (782)
Q Consensus 714 ----l~~w~~p~~s~~~~~~l~~~~~~~----~~vP~r~i~l~~g~~-~lr~P~~~~ 761 (782)
+++|+++..|.+++++|+++.+.+ ++||+|++++++|.. ++.||..++
T Consensus 138 ~~~~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 138 FLYPYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred hhcccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 457999999998887777666654 468999999999843 678998764
No 204
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.3e-11 Score=132.00 Aligned_cols=124 Identities=26% Similarity=0.381 Sum_probs=99.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC--
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN-- 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~-- 442 (782)
...+.++|+.|+||.+.| ..|+ ||||.+.+|..+.||+++...+||+|||.|.|.+.+....|.+.|||+|.--
T Consensus 294 sakitltvlcaqgl~akd---ktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKD---KTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ceeeEEeeeecccceecc---cCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHH
Confidence 367899999999999765 3477 9999999999999999999999999999999999998889999999998411
Q ss_pred ---CCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 443 ---GSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 443 ---~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
-+-...+|+|||+..|.+..|.. ..+-||+|.....+.. -+|.|.|.|.+
T Consensus 371 klrqkl~resddflgqtvievrtlsg--emdvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhh-ccceEEEEEEE
Confidence 00015689999999999999854 3478999987654432 25766666554
No 205
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.23 E-value=3.1e-11 Score=102.24 Aligned_cols=82 Identities=32% Similarity=0.493 Sum_probs=74.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCc
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDE 280 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~ 280 (782)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.+ +.+|.|+|.|.|.+.....+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987776777999999999998899
Q ss_pred eeEEEE
Q 045512 281 ILGREF 286 (782)
Q Consensus 281 ~lG~~~ 286 (782)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.23 E-value=8e-11 Score=102.67 Aligned_cols=99 Identities=42% Similarity=0.626 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+||+.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 479999999999876678899999999998 889999999999999999999998875568899999999988 789999
Q ss_pred EEEEEccccC-CCCCCCCCCCCeEEEe
Q 045512 120 RVTFDLFEVP-HRVPPDSPLAPQWYRL 145 (782)
Q Consensus 120 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 145 (782)
.+.+++.++. ... ...+|++|
T Consensus 81 ~~~~~l~~l~~~~~-----~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGK-----EGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCC-----cCcceecC
Confidence 9999999998 322 25677764
No 207
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.20 E-value=8.1e-11 Score=106.90 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=76.9
Q ss_pred EEEEEEEeeCCCCCCCCCC-CCC-CcEEEEEECC---EEEeeccccCCCC--CccccEEEEEEeCC--------------
Q 045512 369 LELGILSAKNLMPMTSKDG-KLT-DAYCVAKYGN---KWIRTRTILDTLD--PRWNEQYTWEVYDP-------------- 427 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~-~~~-dpyv~v~~~~---~~~~T~~~~~t~n--P~wne~~~f~v~~~-------------- 427 (782)
|+|.|++|+|++..+.... ... ||||++.+.+ .+.+|.++++++| |.||+.|.|++.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7999999999775443212 223 9999999964 5689999999999 99999999987641
Q ss_pred ----------CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCc
Q 045512 428 ----------CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 428 ----------~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
...|.|+|||+|.++ +|++||.++++|+.+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence 247999999999987 8999999999999997765
No 208
>PLN02270 phospholipase D alpha
Probab=99.20 E-value=1.4e-10 Score=132.00 Aligned_cols=126 Identities=19% Similarity=0.266 Sum_probs=105.0
Q ss_pred eEEEEEEEEeeCCCCCCC---------------CCCCCC-CcEEEEEECCEE-EeeccccCC-CCCccccEEEEEEeCCC
Q 045512 367 GILELGILSAKNLMPMTS---------------KDGKLT-DAYCVAKYGNKW-IRTRTILDT-LDPRWNEQYTWEVYDPC 428 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~---------------~~~~~~-dpyv~v~~~~~~-~~T~~~~~t-~nP~wne~~~f~v~~~~ 428 (782)
|.|.++|++|++|++++. ..+.+. ||||.|.+++.+ .||+++.+. .||.|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 889999999999986421 012344 999999998865 699999884 69999999999999988
Q ss_pred ceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 429 TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 429 ~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
+.++|+|.|.|.++ ..+||++.||+.+|..|..+++|+++.+...+-.+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g-------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG-------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC-------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999885 56999999999999999999999999986543333345899999997743
No 209
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.18 E-value=1.7e-10 Score=100.74 Aligned_cols=91 Identities=40% Similarity=0.592 Sum_probs=81.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY---KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|......+..+|||++++.+. .++|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999998876578999999999875 79999999999999999999998876578999999999987 7999
Q ss_pred eEEEEEEccccCCCC
Q 045512 118 VGRVTFDLFEVPHRV 132 (782)
Q Consensus 118 lG~~~i~l~~l~~~~ 132 (782)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
No 210
>PLN02223 phosphoinositide phospholipase C
Probab=99.17 E-value=2.8e-10 Score=124.61 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=94.6
Q ss_pred cEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEe
Q 045512 40 HYLFVNVVKARNLPVM-----DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d 109 (782)
..|.|+|+.|.+++.. +.....||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999998521 2234679999999976 35678877788899999999999988887889999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 110 KDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 110 ~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
+|.. +++|+|++.+++..|..+- ++.+|.+..|.....-.|.+.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEE
Confidence 9987 8999999999999998753 56799988887654456666654
No 211
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=2.3e-10 Score=99.69 Aligned_cols=98 Identities=29% Similarity=0.503 Sum_probs=83.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~~~~~ 445 (782)
|.|.|++|++|.... ..+. +|||.+.+.+ ...+|+++.++.||.|||.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~---~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAKD---LNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCcC---CCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 468999999998542 2345 9999999988 88999999999999999999999997 5678999999998754
Q ss_pred CCcCCCccEEEEEeccccc-CCcEEEEEEEc
Q 045512 446 DDAIDQRIGKVRIRLSTLE-TDRLYTHYYPL 475 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 475 (782)
.+.+||++.+++.++. .......|++|
T Consensus 75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999998 66656677764
No 212
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.15 E-value=2.2e-10 Score=104.05 Aligned_cols=91 Identities=26% Similarity=0.279 Sum_probs=77.9
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeccccCCCC--CeeccEEEEEecc---------------
Q 045512 42 LFVNVVKARNLPVMD--VSG--SLDPYVEVKLGN---YKGIAKHLEKNQN--PVWNQIFAFSKER--------------- 97 (782)
Q Consensus 42 L~V~v~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~i~~t~n--P~wne~f~f~~~~--------------- 97 (782)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+.+|.|.++++| |+||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976543 356 499999999986 4789999999999 9999999997543
Q ss_pred --------CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCC
Q 045512 98 --------LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRV 132 (782)
Q Consensus 98 --------~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~ 132 (782)
.....|.++|||.|.+ +|+++|++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999999 9999999999999988754
No 213
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.11 E-value=4.4e-10 Score=98.13 Aligned_cols=90 Identities=33% Similarity=0.493 Sum_probs=77.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE---EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK---WIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~---~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~ 443 (782)
+.|.|++|++|..... .+. +|||++++.+. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~---~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKDK---KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCCC---CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 6789999999986432 134 99999999874 79999999999999999999999987 789999999998653
Q ss_pred CCCCcCCCccEEEEEecccccCCc
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
.+.++|.+.+++.++..+.
T Consensus 78 -----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -----CCceeEEEEEEHHHcccCc
Confidence 6899999999999987665
No 214
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.09 E-value=7.9e-10 Score=122.18 Aligned_cols=220 Identities=19% Similarity=0.293 Sum_probs=130.7
Q ss_pred CCCceeeecchhhHHHHHHHHHH----HHHHHhhhccccCCchhhHHHHHHHHHHHHcCchhHHHHHHHHHHHHh----h
Q 045512 559 VDYHMWSLRKSKANFQRIMELFS----AICRWFNDICTWRNPVETVLLHVLFLILVFYPELILPTIFLYLFLIGM----W 630 (782)
Q Consensus 559 ~~~~~~s~~~~~~n~~rl~~~~~----~~~~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~----~ 630 (782)
++...||..++++|+.|+..-+- .+.+.+.++.+|++|.+|+.++++|.+ +|+.++++|+++..++.+.+ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67888999999999999976433 889999999999999999999999988 78889999999876665555 5
Q ss_pred ccccCCCCCCCCCCccccc-----------ccccc-------c---c----------------ccccc--CCCccccccc
Q 045512 631 NYRFRPRHPPQVDAKLSQA-----------INAHL-------D---E----------------LVKEF--DTSDELDEEF 671 (782)
Q Consensus 631 ~~~~~~~~p~~~~~~~s~~-----------~~~~~-------~---~----------------~~~~~--~~~~~~~~e~ 671 (782)
.+.+.|.+++.++....+. +++.. | + ..+.. .++++ +++.
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~-~~~~ 240 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDD-DPEE 240 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc-CCcc
Confidence 5566555544444322211 11110 0 0 00000 00111 0000
Q ss_pred CCCC--------------------CCCChHHHHHHH-HHHHHhHhhHHHHHHHHhhHHHHHhhhhcccCchhHH----HH
Q 045512 672 DSFP--------------------TSRPSDTVRMRY-ERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATF----IF 726 (782)
Q Consensus 672 ~~~~--------------------~~~~~~~~~~~~-~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~s~----~~ 726 (782)
+..| .....+..++-+ ..+-+.+..++..++++++..||+-|.|+=+-|+-.. .+
T Consensus 241 ~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRL 320 (642)
T PF11696_consen 241 DSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRL 320 (642)
T ss_pred CCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHH
Confidence 0000 000112222222 2344556679999999999999999999877776431 11
Q ss_pred HHHHHHHHHHHhhh----hhhhhHhhhhhhhccCCCCC-------CCCCC-----cc-hhhhccCCCCcCC
Q 045512 727 LIFSFIWAVFSYVT----PFQVVAVLIGLYMLRHPRFR-------SKMPS-----VP-VNFFKSFPSKSDM 780 (782)
Q Consensus 727 ~~~l~~~~~~~~~v----P~r~i~l~~g~~~lr~P~~~-------~~~~~-----~~-~~~~~r~ps~~d~ 780 (782)
..+++-++++.+|+ =.|.+-++.|+-++..|-++ .++|+ ++ .-.|+.||+|+.+
T Consensus 321 a~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 321 AAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 12222222233333 34545555666666665533 23344 12 3468999999864
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=99.08 E-value=1.2e-09 Score=122.40 Aligned_cols=116 Identities=25% Similarity=0.386 Sum_probs=94.0
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
..|.|+|+.|.+|+.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999997532 1113359999999965 4779999999999999999999988877788999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
|+|.. +++++|++++++..|..+. +|++|.+..|.....-.|.+.++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 99988 8999999999999998753 58999988887643345555554
No 216
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.07 E-value=1.7e-09 Score=117.27 Aligned_cols=249 Identities=20% Similarity=0.206 Sum_probs=160.0
Q ss_pred eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccC----CCCCceeEEEEEeCCCcccccCCCCCCCCeeEEc
Q 045512 234 LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIG----PGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 234 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
+..+|..+.+ .+||.|.+.|.........+.++++++|.+. ....+++|++...++++.... ....-+.+
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~-----~~~~~l~~ 114 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS-----GLTGPLLL 114 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh-----hhhhhhhc
Confidence 3457888886 9999999999988887778899999999775 356789999999999987532 11111222
Q ss_pred cCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCC
Q 045512 310 HKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKL 389 (782)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~ 389 (782)
++.. ....|.|.+.+. .. .......+ -.++|.+|.+.|.. +
T Consensus 115 ~~~~-----------~~~~g~iti~ae--e~----------------------~~~~~~~~-~~~~~~~ld~kd~f---~ 155 (529)
T KOG1327|consen 115 KPGK-----------NAGSGTITISAE--ED----------------------ESDNDVVQ-FSFRAKNLDPKDFF---S 155 (529)
T ss_pred ccCc-----------cCCcccEEEEee--cc----------------------cccCceee-eeeeeeecCccccc---c
Confidence 2211 112355555442 21 01112222 33568899876543 6
Q ss_pred C-CcEEEEEEC---C---EEEeeccccCCCCCccccEEEEEEe-----CCCceEEEEEEeCCCCCCCCCCcCCCccEEEE
Q 045512 390 T-DAYCVAKYG---N---KWIRTRTILDTLDPRWNEQYTWEVY-----DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVR 457 (782)
Q Consensus 390 ~-dpyv~v~~~---~---~~~~T~~~~~t~nP~wne~~~f~v~-----~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~ 457 (782)
+ |||..+.-. + ..++|.+++++++|.|. .|.++.. ++...+.|.|||++.-+ ++++||++.
T Consensus 156 ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~ 228 (529)
T KOG1327|consen 156 KSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQ 228 (529)
T ss_pred cCCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC------CcCceeEec
Confidence 6 999988652 2 24799999999999998 4444443 34568999999999754 789999999
Q ss_pred EecccccCCcEEEEEEEceeeCCCCCc----cccEEEEE-----------------EEEEECchhhHHhhcCCCCCCcc-
Q 045512 458 IRLSTLETDRLYTHYYPLLVLTPSGLK----KNGELHLA-----------------LRFTCTAWVSMVTKYGMPLLPKM- 515 (782)
Q Consensus 458 i~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l~-----------------~~~~~~~~~~~~~~~~~p~~p~~- 515 (782)
.+++++... .....+++...+.+..+ ..|.+.+. .+.+.....++..+++.|..|.+
T Consensus 229 tt~~~~~~~-~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSL 307 (529)
T KOG1327|consen 229 TTLSELQEP-GSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSL 307 (529)
T ss_pred ccHHHhccc-CCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcc
Confidence 999998641 11223444433221111 13544433 01122335566777888888777
Q ss_pred CcCcccchhhHHHHHHHHHHHHHH
Q 045512 516 HYVQPIPVILIDRLRHQAMQIVAA 539 (782)
Q Consensus 516 ~~~~p~~~~~~~~~~~~~~~~~~~ 539 (782)
||..|-...+.+ +|++.+..
T Consensus 308 Hyi~p~~~N~Y~----~Ai~~vG~ 327 (529)
T KOG1327|consen 308 HYIDPHQPNPYE----QAIRSVGE 327 (529)
T ss_pred eecCCCCCCHHH----HHHHHHhh
Confidence 999886655554 55555543
No 217
>PLN02270 phospholipase D alpha
Probab=99.05 E-value=1.5e-09 Score=123.73 Aligned_cols=122 Identities=18% Similarity=0.283 Sum_probs=103.1
Q ss_pred cEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeeeccccCC-CCCeeccEEEEEeccCC
Q 045512 40 HYLFVNVVKARNLPVMD------------------VSGSLDPYVEVKLGNY-KGIAKHLEKN-QNPVWNQIFAFSKERLQ 99 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~~T~~i~~t-~nP~wne~f~f~~~~~~ 99 (782)
|.|.|+|.+|++|+.++ ..+++||||.|.+++. ..||+++.+. .||.|||.|...+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998631 1357899999999985 6799999885 5999999999998775
Q ss_pred CCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccc-ceEEEEEEEEccc
Q 045512 100 SNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKIT-QGEIMLAVWIGTQ 167 (782)
Q Consensus 100 ~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-~G~l~l~~~~~~~ 167 (782)
...+.|.|+|.|.++..+||.+.+++.++..+.. .+.|+++.+.+|+... ...|+++++|...
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-----VDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-----cccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4789999999999988899999999999988653 7899999998877643 2488899988753
No 218
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.03 E-value=5.9e-11 Score=129.00 Aligned_cols=126 Identities=28% Similarity=0.525 Sum_probs=107.7
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeccccCCCCC
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------Y------------------KGIAKHLEKNQNP 85 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~------------------~~~T~~i~~t~nP 85 (782)
.|...+.|.+.+|+||.++|.+|-+|||+...+-. + .+-|++.++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 35667889999999999999999999999887721 0 1347899999999
Q ss_pred eeccEEEEEeccCCCCeEEEEEEeCCC---------------------------------C----CCceeEEEEEEcccc
Q 045512 86 VWNQIFAFSKERLQSNLVEVTVKDKDI---------------------------------G----KDDFVGRVTFDLFEV 128 (782)
Q Consensus 86 ~wne~f~f~~~~~~~~~L~v~V~d~d~---------------------------------~----~d~~lG~~~i~l~~l 128 (782)
.|+|.|.|.+++.+...+++.+||+|. . .|||+|...|+|.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999999999999999999872 1 489999999999999
Q ss_pred CCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccC
Q 045512 129 PHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQA 168 (782)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (782)
.... .++||.|+..+.++...|.+++.+|+.+..
T Consensus 271 P~~G------ld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 271 PPDG------LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred Ccch------HHHHhccCcccccccccceEEEEEEEeeec
Confidence 8753 689999999987776569999999997643
No 219
>PLN02223 phosphoinositide phospholipase C
Probab=99.02 E-value=2.8e-09 Score=116.87 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeeCCCCC--CCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEEE
Q 045512 366 IGILELGILSAKNLMPM--TSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~--~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V~ 436 (782)
...|.|+|+.++++... ...+.... ||||+|.+.| ...+|++..++.||.|||+|+|.+..|. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999998521 11112234 9999999955 3467877778999999999999998774 47999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEE
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALR 494 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
|+|..+ .|+++|+..+|++.|..|- ++++|.+.+.... ..-+|.++++
T Consensus 488 D~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l-~~~~Ll~~f~ 535 (537)
T PLN02223 488 DYEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKAC-SSTMLLTRFK 535 (537)
T ss_pred ecCCCC------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCC-CCceEEEEEE
Confidence 999755 7999999999999999985 6789876543222 2245555544
No 220
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.98 E-value=3.2e-09 Score=118.83 Aligned_cols=117 Identities=25% Similarity=0.339 Sum_probs=95.3
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..++-..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5799999999987522 2223579999999954 3578999889999999999999988877889999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|+|.. +|+|+|++++++..|..+- +..+|.+..|.....-.|.+.+++
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 99997 9999999999999998753 356898888876444567666654
No 221
>PLN02952 phosphoinositide phospholipase C
Probab=98.97 E-value=6.1e-09 Score=116.85 Aligned_cols=119 Identities=22% Similarity=0.243 Sum_probs=92.0
Q ss_pred ceEEEEEEEEeeCCCCCCC---CCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTS---KDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V 435 (782)
...|.|+|+.|++++.... .+.... ||||+|.+-| .+.+|+++.++.||.|||+|.|++..|. ..++|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 4679999999999853111 122234 9999999844 5679999999999999999999998763 5799999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|+|..+ .++++|+..||++.|..|. +|++|.+.. | ..-+..+|-++|.
T Consensus 549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--G-EKLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--C-CCCCCEEEEEEEE
Confidence 9998765 7999999999999999986 589997643 3 2235556666653
No 222
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.95 E-value=6.6e-09 Score=116.17 Aligned_cols=116 Identities=25% Similarity=0.418 Sum_probs=93.8
Q ss_pred cEEEEEEEEeecCC--CC----CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLP--VM----DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~--~~----d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
..|.|+|+.|.+++ .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998853 11 1234579999999964 4679999999899999999999988777789999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
|+|.. +++|+|++.+++..|..+- +..+|.+..|.....-.|.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEE
Confidence 99987 8999999999999998753 45689888887654356666654
No 223
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.93 E-value=4.5e-09 Score=111.68 Aligned_cols=119 Identities=26% Similarity=0.489 Sum_probs=99.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCcccc-EEEEEEeCC---CceEEEEEEeCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNE-QYTWEVYDP---CTVITIGVFDNCHV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne-~~~f~v~~~---~~~l~i~V~d~~~~ 441 (782)
|.|.|+|..|++|+-||.. ... |.||.|++++..+||.+..+++||.||- -|.|.|.|. ...|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999998743 233 9999999999999999999999999994 689999863 55899999999998
Q ss_pred CCCCCCcCCCccEEEEEecccc----------cCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTL----------ETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l----------~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+ .++-||++.|+++.| -+|..+..|+|+.+.-. | -.|+|.+-+++.
T Consensus 81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 7 889999999999987 23567889999986432 3 258888877764
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.92 E-value=3.9e-09 Score=89.58 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=72.5
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCce
Q 045512 42 LFVNVVKARNLPVMD---VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~ 117 (782)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+.+.|||...-..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 579999999998776 5788999999999986 889988 4899999999999964 688999999997656677
Q ss_pred eEEEEEEccccCC
Q 045512 118 VGRVTFDLFEVPH 130 (782)
Q Consensus 118 lG~~~i~l~~l~~ 130 (782)
||...+.+++|..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 8998888888754
No 225
>PLN02228 Phosphoinositide phospholipase C
Probab=98.91 E-value=1.2e-08 Score=113.86 Aligned_cols=118 Identities=21% Similarity=0.331 Sum_probs=96.6
Q ss_pred cEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeccccCCCCCee-ccEEEEEeccCCCCeEEEEE
Q 045512 40 HYLFVNVVKARNLPV---M---DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVW-NQIFAFSKERLQSNLVEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~---~---d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~w-ne~f~f~~~~~~~~~L~v~V 107 (782)
..|.|+|+.|.+|+. . +.....||||+|.+-| .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998742 1 1223479999999965 3679999988899999 99999998887778999999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 108 KDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|+|.. .++++|++.+++..|..+- +..+|.+..|.......|.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 999977 8999999999999997653 4579998888875547788887664
No 226
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.89 E-value=7.7e-09 Score=115.41 Aligned_cols=118 Identities=22% Similarity=0.374 Sum_probs=95.6
Q ss_pred cEEEEEEEEeecCCCC-C---CCCCCCcEEEEEECC-----eeeeecccc-CCCCCeeccEEEEEeccCCCCeEEEEEEe
Q 045512 40 HYLFVNVVKARNLPVM-D---VSGSLDPYVEVKLGN-----YKGIAKHLE-KNQNPVWNQIFAFSKERLQSNLVEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-d---~~g~~dPyv~v~~~~-----~~~~T~~i~-~t~nP~wne~f~f~~~~~~~~~L~v~V~d 109 (782)
-.|.|+|+.+.+++.. + .+..+||||.|++-| ...+|+++. ++-||.|+|+|.|.+..++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999977643 2 235689999999976 367899666 55599999999999998888999999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 110 KDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 110 ~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|.. +|+|+|+.++|+..|..+- +-.+|.+..|.......|.+.+++.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9999 8999999999999998764 3358888887764446777777653
No 227
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.87 E-value=2.5e-08 Score=108.43 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=140.2
Q ss_pred CCCCCCCCCcEEEEEEC-------------------CeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-
Q 045512 54 VMDVSGSLDPYVEVKLG-------------------NYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 54 ~~d~~g~~dPyv~v~~~-------------------~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~- 113 (782)
..|..++.||.|.+... .+..+|.++.+.+||.|-+.|.+.......+.|++.++|.+..
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~ 83 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT 83 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc
Confidence 34445666777776652 1345899999999999999998876554568899999998764
Q ss_pred ----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCcccccccccccccccccccc
Q 045512 114 ----KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLA 189 (782)
Q Consensus 114 ----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 189 (782)
..+|+|++...+..+....... ..|....+.....|+|.+.+.-....
T Consensus 84 ~~l~~~dflg~~~c~l~~ivs~~~~~-------~~l~~~~~~~~~~g~iti~aee~~~~--------------------- 135 (529)
T KOG1327|consen 84 PDLSSADFLGTAECTLSQIVSSSGLT-------GPLLLKPGKNAGSGTITISAEEDESD--------------------- 135 (529)
T ss_pred CCcchhcccceeeeehhhhhhhhhhh-------hhhhcccCccCCcccEEEEeeccccc---------------------
Confidence 7799999999999988654211 12222222222237777765211000
Q ss_pred ccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C----eeeecccccCCCCCCcccceeEEEecC---
Q 045512 190 NTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--N----LVRVTRPSHVRSVNPVWNEEHMFVASE--- 260 (782)
Q Consensus 190 ~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~----~~~kT~~~~~~t~nP~wne~f~f~v~~--- 260 (782)
.....-.++|++|...|..+++|||..+.-- . ..++|+++++ +++|.|.. |......
T Consensus 136 ------------~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~ 201 (529)
T KOG1327|consen 136 ------------NDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCS 201 (529)
T ss_pred ------------CceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcc
Confidence 0122334558999999999999999988653 2 4688999987 99999987 3333222
Q ss_pred -CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 045512 261 -PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 261 -~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
..+..+.+.+||++..++++++|.+..+++++..
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 2245799999999999999999999999998863
No 228
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.86 E-value=1e-08 Score=87.06 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=69.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|.|+|..|+|+....+....+. ||||.|++++. +.||++ +.||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999987653212344 99999999886 899988 58999999999999 557899999999852
Q ss_pred CcCCCccEEEEEeccccc
Q 045512 447 DAIDQRIGKVRIRLSTLE 464 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~ 464 (782)
+..-.||-.-|.+++|.
T Consensus 71 -~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred -CeecceeeehhhHHHHH
Confidence 35668999999999984
No 229
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=2.6e-08 Score=111.67 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=90.2
Q ss_pred ceEEEEEEEEeeCCCCCCC---CCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTS---KDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V 435 (782)
...|.|+|+.+++++.... .+.... ||||+|.+-| ...+|+++.++.||.|||+|+|++.-|. ..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4679999999998753211 122234 9999999843 3478998899999999999999998763 5899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ..-+|.+++.|
T Consensus 548 ~d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l-~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKY-SSTRLLMRFEF 597 (598)
T ss_pred EECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCC-CCCeeEEEEEe
Confidence 9998754 8999999999999999985 4678876433221 22456655543
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.84 E-value=3.3e-08 Score=110.64 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeeCCC--C-CCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 045512 366 IGILELGILSAKNLM--P-MTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~--~-~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V 435 (782)
...|.|+|+.+++++ . ....+.... ||||+|.+.| .+.||+++.++.||.|||.|+|.+..|. ..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999999853 1 111122234 9999999843 4579999999999999999999998764 5899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ...+|.+++.|
T Consensus 531 ~d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l-~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKY-KSVKLLVKVEF 580 (581)
T ss_pred EECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCC-CCeeEEEEEEe
Confidence 9998754 7899999999999999985 5678876433221 22455555443
No 231
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.82 E-value=2.1e-08 Score=112.02 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=91.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC--CcEEEEEECCE-----EEeecc-ccCCCCCccccEEEEEEeCCC-ceEEEEEEeC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT--DAYCVAKYGNK-----WIRTRT-ILDTLDPRWNEQYTWEVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~--dpyv~v~~~~~-----~~~T~~-~~~t~nP~wne~~~f~v~~~~-~~l~i~V~d~ 438 (782)
.|.|+|+.++|+.+.......|. ||||.|++-|. ..+|++ ..++-||.|+|+|+|++..|. .-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999998775432222233 99999998653 479995 456889999999999999874 5799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|..+ +|+|+|+..||++.|..|- +.+||.+..... -...+|.+++.+
T Consensus 697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~-~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEA-LSSASLFVRIAI 743 (746)
T ss_pred CCCC------cccccceeeccHHHhhCce---eeeeecCCCCcc-ccceeEEEEEEE
Confidence 9876 8999999999999999985 457887653211 124667776665
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.82 E-value=4.3e-08 Score=109.46 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=92.7
Q ss_pred ceEEEEEEEEeeCCCC---CCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCcc-ccEEEEEEeCCC-ceEEEE
Q 045512 366 IGILELGILSAKNLMP---MTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRW-NEQYTWEVYDPC-TVITIG 434 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~---~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~w-ne~~~f~v~~~~-~~l~i~ 434 (782)
...|+|+|+.+++|+. .+..+.... ||||+|.+-+ ..+||+++.++.||.| ||.|+|.+..|. ..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999998731 111122334 9999999843 3579999999999999 999999998763 589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ...+|.+++.+..
T Consensus 510 V~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 99998755 7899999999999999885 5678876433221 2467888777644
No 233
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.79 E-value=1.4e-08 Score=107.99 Aligned_cols=124 Identities=29% Similarity=0.454 Sum_probs=102.4
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeeeeeccccCCCCCeec-cEEEEEec--cCCCCeEEEEEEeCCCC-C
Q 045512 40 HYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGNYKGIAKHLEKNQNPVWN-QIFAFSKE--RLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~~~~~T~~i~~t~nP~wn-e~f~f~~~--~~~~~~L~v~V~d~d~~-~ 114 (782)
|.|.|+|+.|++||.+|+. ...|.||++++++..++|.+..+++||.|| +.|.|.++ +++...|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 6789999999999999864 567999999999999999999999999999 56889886 46788999999999999 9
Q ss_pred CceeEEEEEEccccCCCCC-----CCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 115 DDFVGRVTFDLFEVPHRVP-----PDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~-----~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|-||.+.|++..|..... ...++..-|+++.+.-.. . .|+|.+-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg-i-rgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG-I-RGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-c-cceeEEEEEEe
Confidence 9999999999998865321 124566789999875422 2 39998877654
No 234
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.79 E-value=2.9e-09 Score=116.15 Aligned_cols=101 Identities=29% Similarity=0.453 Sum_probs=89.4
Q ss_pred eeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEeccC--
Q 045512 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGIAKHLEKNQNPVWNQIFAFSKERL-- 98 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~i~~t~nP~wne~f~f~~~~~-- 98 (782)
.+++.|+.-.+ .|.|.|+.|+++.+-|.+|.+||||+|.+++. ..+|+|+.+|+||+|+|.|+|.+...
T Consensus 937 svr~~y~~n~q--~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c 1014 (1103)
T KOG1328|consen 937 SVRAYYNGNAQ--TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPC 1014 (1103)
T ss_pred EEEEEeecccc--chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcccc
Confidence 46777777555 89999999999999999999999999999973 46999999999999999999998532
Q ss_pred --CCCeEEEEEEeCCCC-CCceeEEEEEEccccCC
Q 045512 99 --QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPH 130 (782)
Q Consensus 99 --~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~ 130 (782)
....|.|+|.|+|-. .+||-|++.+.|.++..
T Consensus 1015 ~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1015 STETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred ccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 357899999999999 99999999999998864
No 235
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.70 E-value=5.8e-08 Score=107.34 Aligned_cols=117 Identities=19% Similarity=0.328 Sum_probs=91.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeec-cEEEEEeccCCCCeEEEEEEeCCC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWN-QIFAFSKERLQSNLVEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wn-e~f~f~~~~~~~~~L~v~V~d~d~ 112 (782)
-.|.|+|+.|++|+... .|-+.|||+|.+-| ..++|.++.+++||+|| |.|.|.+..++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 47899999999999544 46677999999965 34566777899999999 999999999988999999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+ ...|||++.+|+..+..+- +-.+|.+.-++...+..|.+.+.+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEec
Confidence 9 5679999999999998753 2236655433333335666665443
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.63 E-value=4.6e-08 Score=112.23 Aligned_cols=119 Identities=28% Similarity=0.394 Sum_probs=98.7
Q ss_pred ccccccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEE
Q 045512 19 ARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAF 93 (782)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f 93 (782)
.|+ +.|.++++++|. .+.|+|.|.-|++|+--..+..+||||+.++.+ .++||+++++|.||.|||...+
T Consensus 1508 p~~-iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY 1582 (1639)
T KOG0905|consen 1508 PGE-IGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVY 1582 (1639)
T ss_pred ccc-cCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheee
Confidence 344 245778888887 479999999999996554467899999999975 2789999999999999999988
Q ss_pred E---eccCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 94 S---KERLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 94 ~---~~~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
. .+.++...|.+.||..+.. .+.++|.+.++|.++...+. ...||+|..
T Consensus 1583 ~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1583 DGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGA 1635 (1639)
T ss_pred cCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeeccc
Confidence 6 4455568899999999998 99999999999999987653 458999964
No 237
>PLN02352 phospholipase D epsilon
Probab=98.58 E-value=3.8e-07 Score=104.25 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=91.6
Q ss_pred ceEEEEEEEEeeCCCCCCC---CCCCCCCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCC
Q 045512 366 IGILELGILSAKNLMPMTS---KDGKLTDAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVFDNCH 440 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V~d~~~ 440 (782)
-|.|.++|++|+-+...-. .-+.++||||.|.+++.+ .|| .+..||.|||.|.+++..+. ..++|+|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC--
Confidence 3889999999974332100 012334999999998865 588 55669999999999999876 6899999882
Q ss_pred CCCCCCCcCCCccEEEEEecccccCCcE-EEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLETDRL-YTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
-.+||++.||+.+|..|.. +++|+++.+...+-. +..+|+++++|.+..
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAE 133 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhh
Confidence 4699999999999999866 899999998654332 225999999997754
No 238
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.56 E-value=3.5e-05 Score=81.42 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=157.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEec-------cCCCCeEEEEEEeCCCC-
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKE-------RLQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~-------~~~~~~L~v~V~d~d~~- 113 (782)
+.|+|++|+|.+... ...-.|..+++++...|..+..+..|.||..+.|.++ ..+...|++++|..|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999999763 3466899999999999999999999999999999864 34578899999999843
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CcccceEEEEEEEEcccCCccccccc--c-cccccccc--
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG--DKITQGEIMLAVWIGTQADESFSEAW--H-SDAHNISQ-- 185 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~~~d~~~~~~~--~-~~~~~~~~-- 185 (782)
+.+.||.+.++|.........+....+.||+|...++ +... -+|.+.+.+.........+.. . ...+....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~K-PEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~ 157 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHK-PELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHV 157 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCC-ccEEEEEEEeccccccCCccccccccCCCcccCCC
Confidence 8899999999999882222222346789999988733 2223 688888877654332100000 0 00000000
Q ss_pred ----ccccc-------cc-------cccccCCceEEEEEEEEEeeCCCCCC----CC--CCCCcEEEEEECCeeeecccc
Q 045512 186 ----TNLAN-------TI-------SKVYFSPKLYYLRVFVFEAQDLVPSE----EG--RAPDAYVKIQLGNLVRVTRPS 241 (782)
Q Consensus 186 ----~~~~~-------~~-------~~~~~~p~~~~L~V~V~~a~~L~~~d----~~--g~~dpyv~v~lg~~~~kT~~~ 241 (782)
..... .. ......-....|.|++..|++|...- .. +....|....+-+....|..-
T Consensus 158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 158 PPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred cccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 00000 00 00011224668999999999987652 11 235666777776666666655
Q ss_pred cCCCCCCccc--ceeEEEecC---------CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 045512 242 HVRSVNPVWN--EEHMFVASE---------PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 242 ~~~t~nP~wn--e~f~f~v~~---------~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
.. ..+|.|. +.-.+.+.. .....|.|.++. .+..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 54 6677653 222244321 123467777775 36789999999999874
No 239
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.56 E-value=3.3e-07 Score=101.53 Aligned_cols=98 Identities=18% Similarity=0.326 Sum_probs=80.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEee-ccccCCCCCccc-cEEEEEEeCC-CceEEEEEEe
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRT-RTILDTLDPRWN-EQYTWEVYDP-CTVITIGVFD 437 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T-~~~~~t~nP~wn-e~~~f~v~~~-~~~l~i~V~d 437 (782)
-.|.|.|+.|++|+. .++|- .|||.|++-| .+++| .++.+.+||+|| |.|+|.|.+| ..-|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 688999999999983 34555 7999999844 34444 456678999999 9999999998 4589999999
Q ss_pred CCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 438 NCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
+|.++ ...|||++..|+..+..|- +.+||.+
T Consensus 1141 eDmfs------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99987 5679999999999998874 5678865
No 240
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.49 E-value=1.3e-07 Score=82.72 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=79.9
Q ss_pred EEEEEEEeeCCCCCCCC-----------CCCCCCcEEEEEE----CCEEEeeccccCCCCCccccEEEEEEe--------
Q 045512 369 LELGILSAKNLMPMTSK-----------DGKLTDAYCVAKY----GNKWIRTRTILDTLDPRWNEQYTWEVY-------- 425 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~-----------~~~~~dpyv~v~~----~~~~~~T~~~~~t~nP~wne~~~f~v~-------- 425 (782)
|.|.|++|.||+.+... ..-|.++||.+.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46788999998753211 1224499999985 457799999999999999999999986
Q ss_pred CC--------CceEEEEEEeCCCCCCCC----CCcCCCccEEEEEecccccC-CcEEEEEEEc
Q 045512 426 DP--------CTVITIGVFDNCHVNGSK----DDAIDQRIGKVRIRLSTLET-DRLYTHYYPL 475 (782)
Q Consensus 426 ~~--------~~~l~i~V~d~~~~~~~~----~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L 475 (782)
+. ..++.++||+...-+.++ ...+|-.||.+.||+.+|.. ...++.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 347999999987644222 13466789999999999854 3456889985
No 241
>PLN02352 phospholipase D epsilon
Probab=98.35 E-value=3.8e-06 Score=96.22 Aligned_cols=118 Identities=17% Similarity=0.288 Sum_probs=91.3
Q ss_pred cEEEEEEEEeecCCCC----C-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 40 HYLFVNVVKARNLPVM----D-VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~----d-~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
|.|.++|.+|+-+... + .....||||.|.+++. ..|| .+..||.|||.|...+...-...+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 6899999999843221 1 1122399999999985 5688 556699999999999877544679999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccC
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQA 168 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (782)
+..+||.+.+++.++..+.. ....|+++.+.+|+......|+++++|....
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 46899999999999988632 2789999999888775424889999887543
No 242
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.28 E-value=9e-07 Score=101.96 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=84.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC-----EEEeeccccCCCCCccccEEEEE-Ee--CC-CceEEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWE-VY--DP-CTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~-v~--~~-~~~l~i~V~ 436 (782)
.|.|.|.|..|+||+-.- +|...||||+.++-. .+.||+++++|.||.|||..... .. .. ...|.+.||
T Consensus 1523 ~~~LtImV~H~K~L~~Lq--dg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQ--DGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred CceEEEEhhhhccccccc--CCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 489999999999996432 444449999999954 35899999999999999988766 22 22 358999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
.++.+. .+.++|.+.|+|.++.-.+...+||+|..
T Consensus 1601 s~~~~~------en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1601 SNGGLL------ENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ccccee------eeeeeeeeecchhhcchhhhhcceeeccc
Confidence 998876 78899999999999987776779999953
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.82 E-value=0.0036 Score=66.41 Aligned_cols=236 Identities=14% Similarity=0.208 Sum_probs=156.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEec-------CCCCCeEEEEEEEcc-C
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVAS-------EPFEDLIIVTVEDRI-G 275 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~-------~~~~~~L~i~V~d~d-~ 275 (782)
+.|.|+++++.+... .....|..++.++...|..+.. +..|.||..+.+.+. ......|++++|-.| .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 568999999998763 2467888999999999998886 999999999999763 233567999999888 5
Q ss_pred CCCCceeEEEEEeCCCc---ccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCC------
Q 045512 276 PGKDEILGREFIPVRNV---PQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDE------ 346 (782)
Q Consensus 276 ~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~------ 346 (782)
.+..+.+|.+.++|... .. .......+||.|-+... + -.+..-++.+.++++........
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~---~~~~~~~~W~~LL~~~~------~--y~~~KPEl~l~l~ie~~~~~~~~~~~~~~ 146 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE---KNQKQKPKWYKLLSSSS------K--YKKHKPELLLSLSIEDDSKPQTPDFESFK 146 (340)
T ss_pred CCcceeccEEEEEccccccccc---cccccCCCeeEcccccc------c--cccCCccEEEEEEEeccccccCCcccccc
Confidence 67888999999999988 33 22346789999987631 1 11223456666666543221000
Q ss_pred ---CCCCCC-------CCCcccc-----------cc----ccCcceEEEEEEEEeeCCCCCCCC---CCCCC-CcEEEEE
Q 045512 347 ---STHFSS-------DLQPSSM-----------SL----RKGSIGILELGILSAKNLMPMTSK---DGKLT-DAYCVAK 397 (782)
Q Consensus 347 ---~~~~~~-------d~~~~~~-----------~~----~~~~~g~l~v~v~~a~~L~~~~~~---~~~~~-dpyv~v~ 397 (782)
.+.... ...+... +. .....-.|.|++-.|+||...... +..+. ..|....
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ys 226 (340)
T PF12416_consen 147 AKPAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYS 226 (340)
T ss_pred ccCCCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEE
Confidence 000111 0001000 00 012356788899999998765211 12233 6677777
Q ss_pred ECCEEEeeccccCCCCCcc--ccEEEEEEeC----------CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccC
Q 045512 398 YGNKWIRTRTILDTLDPRW--NEQYTWEVYD----------PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET 465 (782)
Q Consensus 398 ~~~~~~~T~~~~~t~nP~w--ne~~~f~v~~----------~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
+-|....|...+...+|.| ++...+.+.. ....|.|.++.. +..||.+.|++..+.+
T Consensus 227 llGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 227 LLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred ecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----------CcEEEEEEEEhhhccC
Confidence 8777888888888888877 3333366652 134688888773 5689999999999853
No 244
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.78 E-value=3.4e-05 Score=67.85 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=77.7
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEec--------
Q 045512 42 LFVNVVKARNLPVMDV-------------SGSLDPYVEVKLG----NYKGIAKHLEKNQNPVWNQIFAFSKE-------- 96 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-------------~g~~dPyv~v~~~----~~~~~T~~i~~t~nP~wne~f~f~~~-------- 96 (782)
|.|.|++|.+|....+ .-.-|+||++.+. ++..+|+++.++--|+|+-.+.|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999975421 1235899999964 46889999999999999999999754
Q ss_pred -------cCCCCeEEEEEEeCCCC-----------CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 97 -------RLQSNLVEVTVKDKDIG-----------KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 97 -------~~~~~~L~v~V~d~d~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.++...+.++||++... +|-.+|.+.||+.+|..+.. ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs----GitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS----GITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc----CccccccC
Confidence 13457899999998642 56789999999999987653 36789875
No 245
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.62 E-value=6.5e-05 Score=61.15 Aligned_cols=88 Identities=14% Similarity=0.230 Sum_probs=65.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEE--C-CeeeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCCC-C
Q 045512 42 LFVNVVKARNLPVMDV-SGSLDPYVEVKL--G-NYKGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~--~-~~~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~~-~ 114 (782)
+.|+|++|+||..... ...+.-|++=-+ . +..+||....+..||+|+|+|.|.+. .++.-.|.|.|+. .. +
T Consensus 1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 3689999999976542 223333544333 2 24789999999999999999999865 4456678888888 44 8
Q ss_pred CceeEEEEEEccccCCC
Q 045512 115 DDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~ 131 (782)
.+.||.|++.+.++-..
T Consensus 79 Ke~iG~~sL~l~s~gee 95 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ 95 (103)
T ss_pred cceeeEEEeecccCCHH
Confidence 89999999999988654
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.59 E-value=9.2e-05 Score=84.59 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=75.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPY-VEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPy-v~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d 115 (782)
=.|...++|++|+ ++. .||| +.+++|.+.++|.+.++|.||+||+...|.+........+|.|||.+.+ ++
T Consensus 52 ~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n 124 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN 124 (644)
T ss_pred ccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence 4578999999997 332 4886 5667788999999999999999999999998877667789999999999 99
Q ss_pred ceeEEEEEEccccCCCC
Q 045512 116 DFVGRVTFDLFEVPHRV 132 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~ 132 (782)
+++|.|++++.++..++
T Consensus 125 ~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 125 TLVGYCELDLFDFVTQE 141 (644)
T ss_pred HhhhheeecHhhccHHH
Confidence 99999999998887653
No 247
>PLN02964 phosphatidylserine decarboxylase
Probab=97.50 E-value=0.00014 Score=83.10 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=73.3
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCCCcEEEE-EECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLTDAYCVA-KYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHV 441 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v-~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~ 441 (782)
.-.|.+.+++++|+ |+. +|+|+.+ .+|.+.+||.+.++|.||+||+...|.|... ....+|.|||++.+
T Consensus 51 ~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 51 DFSGIALLTLVGAE----MKF-----KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccCeEEEEeehhh----hcc-----CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 34689999999987 322 3888655 6688999999999999999999999998852 23479999999998
Q ss_pred CCCCCCcCCCccEEEEEecccccCCc
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+ +++++|.++++|.++...+
T Consensus 122 s------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 S------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred C------HHHhhhheeecHhhccHHH
Confidence 7 8999999999998886543
No 248
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.46 E-value=0.00018 Score=58.66 Aligned_cols=95 Identities=15% Similarity=0.273 Sum_probs=68.9
Q ss_pred EEEEEEeeCCCCCCC-CCCCCcEEEEEEC--C-eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEEccCCCC
Q 045512 205 RVFVFEAQDLVPSEE-GRAPDAYVKIQLG--N-LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRIGPGK 278 (782)
Q Consensus 205 ~V~V~~a~~L~~~d~-~g~~dpyv~v~lg--~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~d~~~~ 278 (782)
.++++.|+||.-... ...+..|++-.+. . ...||.... +..||.|+|+|.|.+.... .-.|.|+|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 578999999975443 3346667776554 2 356666666 4999999999999875433 4468888887 4678
Q ss_pred CceeEEEEEeCCCcccccCCCCCCCCeeEE
Q 045512 279 DEILGREFIPVRNVPQRHETTKLPDPRWFN 308 (782)
Q Consensus 279 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~ 308 (782)
...||.|.++++++-.+ ...+|.+
T Consensus 79 Ke~iG~~sL~l~s~gee------E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ------ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH------Hhhhhhc
Confidence 88999999999988753 2556654
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.33 E-value=0.00016 Score=75.31 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=91.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEeccC-----------CCCeE
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGIAKHLEKNQNPVWNQIFAFSKERL-----------QSNLV 103 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~i~~t~nP~wne~f~f~~~~~-----------~~~~L 103 (782)
..|.+.|+++.+++........|-||++.+- .++.+|.++++|.+|.|+|.|.+++... ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3578889999988865433456889998873 2578999999999999999999998651 13569
Q ss_pred EEEEEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 104 EVTVKDKDIG--KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 104 ~v~V~d~d~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
.|++|.+..+ +|.++|.|.+.|.-|...-. ....++|.+ |.+...|.|.+.+.+.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~ce-----i~e~~~l~D--GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCE-----ICEYLPLKD--GRKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccc-----hhhceeccc--cccccCCeeEEEEEEe
Confidence 9999999888 99999999999998876432 345567765 4443348888888664
No 250
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.29 E-value=0.00021 Score=74.45 Aligned_cols=119 Identities=23% Similarity=0.332 Sum_probs=92.6
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC-C----------
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYD-P---------- 427 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~-~---------- 427 (782)
....|++.|.++.+++.. .+... |.|+++++- .++.+|.+++.|.+|.|+|.|.+.+.. +
T Consensus 365 ~d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~f 441 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRF 441 (523)
T ss_pred chhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHH
Confidence 345678888899888742 22223 999999872 356789999999999999999999975 2
Q ss_pred -CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCc-cccEEEEEEEE
Q 045512 428 -CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLK-KNGELHLALRF 495 (782)
Q Consensus 428 -~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~ 495 (782)
...+.|++|+...+ ..+|.++|.+.|.|..|++.-.....|+|.+ |.+ -+|+|.+.+++
T Consensus 442 kr~g~kfeifhkggf-----~rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 442 KRLGKKFEIFHKGGF-----NRSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred HhcCeeEEEeecccc-----ccccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 12589999998766 3489999999999999998877788899976 322 26888888876
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.00048 Score=71.39 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=85.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-C----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEe
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-N----KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFD 437 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-~----~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d 437 (782)
...|.+.|.|++|++|....- .+.. +|||+|++- + .+.+|+...+|++|-+.++..|.-.-+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~--~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPG--SKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCC--cccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 457899999999999986432 1223 999999983 2 3578999999999999988888877778899999995
Q ss_pred C-CCCCCCCCCcCCCccEEEEEecccccCCc-EEEEEEEceeeC
Q 045512 438 N-CHVNGSKDDAIDQRIGKVRIRLSTLETDR-LYTHYYPLLVLT 479 (782)
Q Consensus 438 ~-~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~ 479 (782)
. ..+ ..+.|+|.++|-+.+|.-.. ....||+|....
T Consensus 344 dygRm------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGRM------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccc------chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 3 333 37889999999999997655 778999997643
No 252
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.00097 Score=69.20 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=89.4
Q ss_pred cccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEE
Q 045512 34 DLVEQMHYLFVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTV 107 (782)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V 107 (782)
.+....|.+.|.|++|++|..+.. ...++|||+|++-+ .+.+|+...+|..|-+-+...|.-.. +...|.+.|
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv 341 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTV 341 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEE
Confidence 355678899999999999987643 23789999999964 26789999999999999988887555 468999999
Q ss_pred EeC-CCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 108 KDK-DIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 108 ~d~-d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
|.. ... .+.|+|.+.+-+.+|.... ...-.||+|-....
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgsss 382 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSSS 382 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCcc
Confidence 865 445 8899999999999998753 13568999976543
No 253
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.50 E-value=0.013 Score=67.08 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=82.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeccccCC-CCCeeccE-EEEE-eccCCCCeEEEEEEe
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGIAKHLEKN-QNPVWNQI-FAFS-KERLQSNLVEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~i~~t-~nP~wne~-f~f~-~~~~~~~~L~v~V~d 109 (782)
+.+.|+|++|.-|..++. ..||.|.+=| ..++|+++.++ .||+|+|. |.|. +-.+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 578999999999987653 4899999844 46789988855 49999965 8886 334456789999999
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 110 KDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 110 ~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
.. ..+||+--+++..|..+- +...|....+.......|.+.+-+
T Consensus 779 Eg---gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 779 EG---GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred cC---CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEe
Confidence 84 579999999999998753 345777766665444556555543
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.98 E-value=0.078 Score=49.43 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=84.4
Q ss_pred cccEEEEEEEEeecCCCCCC--CCCCC--cEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCC-------------C
Q 045512 38 QMHYLFVNVVKARNLPVMDV--SGSLD--PYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQ-------------S 100 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~--~g~~d--Pyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~-------------~ 100 (782)
...+|.|+|..++.....-. .+..+ -.+-+.+++|+++|+.+..+.+|.|+|.|-|.++... .
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 34589999999987653321 13333 3456666899999999999999999999999875321 3
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-cccceEEEEEEEEc
Q 045512 101 NLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD-KITQGEIMLAVWIG 165 (782)
Q Consensus 101 ~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~ 165 (782)
..|++.|.--|.. ...++|+..++...+....... ...-..|.+..+. +...|-|.+++.+.
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~---~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS---TSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccCCCc---cceeEEEeccCCCCccceeEEEEEEEee
Confidence 5788888887776 6689999999988877654310 1112234333322 12238888887554
No 255
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.62 E-value=0.084 Score=49.93 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=70.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d 111 (782)
.++|+|++|.++...+ .+|-||.+.+ |++ ...|+.+.. .++.|||.+.|++. + +.+..|.|.||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5889999999998643 4688888855 554 235655554 68999999999863 3 34688999999976
Q ss_pred CC-----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 112 IG-----KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 112 ~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
.. ....+|.+.++|-+... .| . .|...+.+|...
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~-------------~L-------r-~G~~~L~lW~~~ 123 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD-------------TL-------V-SGKMALNLWPVP 123 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC-------------hh-------h-CCCEEEEEEcCC
Confidence 42 22468888887766321 11 1 388888988753
No 256
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.48 E-value=0.092 Score=50.64 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=52.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d 111 (782)
.++|+|+.+.++... ....+-||++.+ |++ ...|+.+..+.++.|||.+.|++. + +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 589999999999872 244667777644 664 346776666678999999999753 3 34688999999975
Q ss_pred C
Q 045512 112 I 112 (782)
Q Consensus 112 ~ 112 (782)
.
T Consensus 87 ~ 87 (173)
T cd08693 87 K 87 (173)
T ss_pred c
Confidence 4
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.32 E-value=0.18 Score=47.66 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=60.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEE--CCEEE----eeccccCCCCCccccEEEEEEe--C-C-CceEEEEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKY--GNKWI----RTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V~ 436 (782)
..++|+|++++++...+ ..|-||.+.+ |++.. .|+.+. ..++.|||-.+|++. + | ...|.|+||
T Consensus 8 ~~~~v~i~~~~~~~~~~-----~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 8 SNLRIKILCATYVNVND-----IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCeEEEEEeeccCCCCC-----cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 36889999999986321 2388888855 66543 454444 368999999999876 3 2 668999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
+...-. +++.....||.+.++|-+
T Consensus 82 ~~~~~~--~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 82 SVKGRK--GAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEeccc--CCCCceEEEEEEEEEEEC
Confidence 975311 011133579999999987
No 258
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.27 E-value=0.074 Score=49.62 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=29.9
Q ss_pred HHHHHhhhccccCCchhhHHHHHHHHHHHHcCchhHHHHH
Q 045512 582 AICRWFNDICTWRNPVETVLLHVLFLILVFYPELILPTIF 621 (782)
Q Consensus 582 ~~~~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l~~p~~~ 621 (782)
..+..++.+++|++|..|.++.+++++++.- -+++|+=.
T Consensus 80 t~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r~ 118 (156)
T PF08372_consen 80 TQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFRV 118 (156)
T ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHHH
Confidence 6789999999999999999988887776543 23456543
No 259
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.25 E-value=0.25 Score=46.07 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=70.4
Q ss_pred CceEEEEEEEEEeeCCCCCCCC--CCCC--cEEEEEECCeeeecccccCCCCCCcccceeEEEecCCC------------
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEG--RAPD--AYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF------------ 262 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~--g~~d--pyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~------------ 262 (782)
|...+|.+.|..++-....... +..+ -.+-+.+++|.++|+.+.. +.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4556899999998764322110 2333 3455566799999999987 999999999999986442
Q ss_pred -CCeEEEEEEEccCCCCCceeEEEEEeCCCcccc
Q 045512 263 -EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQR 295 (782)
Q Consensus 263 -~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~ 295 (782)
.+.+.+.|.-.|..+...++|+..++...+...
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 246778887777666668999999998887753
No 260
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.17 E-value=0.19 Score=47.68 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=68.5
Q ss_pred CCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 045512 58 SGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 58 ~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~ 127 (782)
...+|-||.+.+ +++ ..+|+.+.-+..+.|||...|++. + +.+..|.|.|||.+.. +...+|.+.++|-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 345788888865 554 346777776778999999999864 3 3468899999998766 67789999988776
Q ss_pred cCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCccc
Q 045512 128 VPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESF 172 (782)
Q Consensus 128 l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~ 172 (782)
-.. .|. .|...+.+|....+|...
T Consensus 107 ~~g-------------~Lr--------~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 107 KDG-------------TLR--------RGRQKLRVWPDVEADGSI 130 (159)
T ss_pred CCC-------------cEe--------cCCEEEEEEeCCCCCCcc
Confidence 421 121 288899999887776544
No 261
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.99 E-value=0.24 Score=47.00 Aligned_cols=107 Identities=25% Similarity=0.399 Sum_probs=72.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d 111 (782)
.++|++....++...+ ....+-||.+.+ |++ ...|.......++.|||.+.|++. + +.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5788888888887622 234566777754 554 234444444478999999999853 3 34678999999986
Q ss_pred CC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCC
Q 045512 112 IG---KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQAD 169 (782)
Q Consensus 112 ~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d 169 (782)
.. ++..||.+.++|-+... .| . .|...+.+|.....+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~-------------~L-------~-~G~~~l~lW~~~~~~ 127 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG-------------KL-------R-QGMITLNLWPGKKTD 127 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC-------------cE-------e-cCCEEEeccCCcccC
Confidence 54 35789999888776422 12 1 288888888665444
No 262
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=94.87 E-value=0.0082 Score=57.92 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=18.4
Q ss_pred HHHHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhccCCCCCCC
Q 045512 701 VGDLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSK 762 (782)
Q Consensus 701 ~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~lr~P~~~~~ 762 (782)
...++..+..++.++.|+||..|..++++|.+++.+..+++...++.+..+..+-=|.+-..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 33455567888999999999999999999999999999888887777655554455555443
No 263
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.87 E-value=0.19 Score=48.44 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=62.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKY--GNKW----IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGV 435 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~~----~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V 435 (782)
..++|+|+.+.+|... ... +-||.+.+ |++. ..|+.+.-+.++.|||.++|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 3688999999999741 123 77877644 6664 35655554578999999999876 3 3 66899999
Q ss_pred EeCCCCCCC----------CCCcCCCccEEEEEeccc
Q 045512 436 FDNCHVNGS----------KDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 436 ~d~~~~~~~----------~~~~~d~~lG~~~i~l~~ 462 (782)
|+......+ +..+.+..||.+.++|-+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 997542210 012235689999888876
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.79 E-value=0.7 Score=43.02 Aligned_cols=117 Identities=20% Similarity=0.300 Sum_probs=78.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeecccc-CCCCCeeccEEEEEec--------cCCCCeEEEEE
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK---GIAKHLE-KNQNPVWNQIFAFSKE--------RLQSNLVEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~i~-~t~nP~wne~f~f~~~--------~~~~~~L~v~V 107 (782)
..+.|+|++..+++. ....-||+..-++.. .+|.... .+..-.|||.|.+.+. ..+...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467899999999986 334556777666653 4555444 3446899999998752 13456799999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 108 KDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
+..... +...+|.+.|+|+++..... .....-++|..... .. ..|.+++.+..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~~--~~-a~L~isi~~~~ 136 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCKK--SN-ATLSISISLSE 136 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCCC--CC-cEEEEEEEEEE
Confidence 998543 33699999999999987531 11334566665522 22 67777776553
No 265
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.63 E-value=0.17 Score=58.30 Aligned_cols=85 Identities=25% Similarity=0.312 Sum_probs=67.8
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeecccccCCCCCCcccce-eEEE-ecCCCCCeEEEEEEE
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-------LVRVTRPSHVRSVNPVWNEE-HMFV-ASEPFEDLIIVTVED 272 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-------~~~kT~~~~~~t~nP~wne~-f~f~-v~~~~~~~L~i~V~d 272 (782)
+.+.|+|++++=|..++. ..||.|.+-+ ..++|+++..++.||+|+|. |.|. +--+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 468999999998876554 5799999864 56889998888999999975 7774 333445679999998
Q ss_pred ccCCCCCceeEEEEEeCCCccc
Q 045512 273 RIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
.. ..+||+-.+++..|..
T Consensus 779 Eg----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred cC----CceeeeeccchhcccC
Confidence 63 5699999999988874
No 266
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.86 E-value=0.13 Score=52.29 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=75.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC--CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT--DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCH 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~--dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~ 440 (782)
...|.|.+++++++||.-... .+|. +-||++++.. .+.||.+......-.|.|.|+.++... .++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~--~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ--QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh--ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCc
Confidence 345999999999999985432 2233 9999999975 456777776777778999999998863 689999999986
Q ss_pred CCCCCCCcCCCc--cEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 441 VNGSKDDAIDQR--IGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~--lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.. .+++ +| -|.+..+.. +.-.+.+.|.. ...|++.+++.+
T Consensus 125 q~------RHKLC~~g--~l~~~~v~r-qspd~~~Al~l------ePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR------RHKLCHLG--LLEAFVVDR-QSPDRVVALYL------EPRGQPPLRLPL 166 (442)
T ss_pred hh------hccccccc--hhhhhhhhh-cCCcceeeeec------ccCCCCceeccc
Confidence 43 3333 44 233332221 11133444432 234888888765
No 267
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.61 E-value=0.96 Score=42.08 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=68.1
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee---eecccccCCCCCCcccceeEEEecC--------CCCCeEEEE
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV---RVTRPSHVRSVNPVWNEEHMFVASE--------PFEDLIIVT 269 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~---~kT~~~~~~t~nP~wne~f~f~v~~--------~~~~~L~i~ 269 (782)
...+.+.|++..+++. .....||+..-++.. ..|......+..-.|++.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3468899999999877 224556666666543 4555544336667999999887631 123358888
Q ss_pred EEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 270 VEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 270 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
|+.....++...+|.+.++|+++... .......-++|...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~---~~~~~~~~~~l~~~ 121 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANE---DEEPITVRLLLKKC 121 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCc---CCCcEEEEEeCccC
Confidence 88774333337999999999998853 11223344566554
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.12 E-value=0.3 Score=46.31 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=50.5
Q ss_pred CcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEec
Q 045512 391 DAYCVAKY--GNKW----IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRL 460 (782)
Q Consensus 391 dpyv~v~~--~~~~----~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l 460 (782)
|-||.+.+ +++. ..|+.+.-+..+.|||-.+|+|. + | ...|.|+|||.+.-+ ....||.+.++|
T Consensus 31 ~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~------~~~~vg~~~~~l 104 (159)
T cd08397 31 DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG------KAVPFGGTTLSL 104 (159)
T ss_pred CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC------CceEEEEEEEee
Confidence 77877755 5554 36666665678899999999986 3 3 668999999986422 567899999999
Q ss_pred ccc
Q 045512 461 STL 463 (782)
Q Consensus 461 ~~l 463 (782)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 874
No 269
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.73 E-value=0.94 Score=43.66 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=56.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE--CCEE---EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEe
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKY--GNKW---IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGVFD 437 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~~---~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V~d 437 (782)
.++|+|+.+..+. .+ .... .-||.+.+ |++. .+|..+.-+.++.|||-++|++. | | ...|.|+||+
T Consensus 11 ~friki~~~~~~~-~~---~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIPV-LP---RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecccC-cC---CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 5777887776432 21 1112 35555533 5543 36666666778999999999876 3 2 6689999999
Q ss_pred CCCCCC----------CCCCcCCCccEEEEEeccc
Q 045512 438 NCHVNG----------SKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 438 ~~~~~~----------~~~~~~d~~lG~~~i~l~~ 462 (782)
...-.. ...+..+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 742110 0112246778888888876
No 270
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.31 E-value=1.5 Score=42.30 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=49.8
Q ss_pred ecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---eeeeccccCCCCCeeccEEEEEec--c-CCCCeEE
Q 045512 33 YDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY---KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVE 104 (782)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~ 104 (782)
+++.. .++|+|.++.++.. +......-||++.+ |++ ..+|.....+.++.|||.+.|++. + +....|.
T Consensus 6 wdi~~---~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc 81 (178)
T cd08399 6 WDCDR---KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLN 81 (178)
T ss_pred EecCC---CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEE
Confidence 44543 47888888874432 22333345666533 554 236777777778999999999863 3 3468899
Q ss_pred EEEEeCCC
Q 045512 105 VTVKDKDI 112 (782)
Q Consensus 105 v~V~d~d~ 112 (782)
|.||+...
T Consensus 82 ~ti~~~~~ 89 (178)
T cd08399 82 LQIYCGKA 89 (178)
T ss_pred EEEEEEec
Confidence 99999743
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.99 E-value=1 Score=43.46 Aligned_cols=105 Identities=22% Similarity=0.316 Sum_probs=70.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeecccc----CCCCCeeccEEEEEec---cCCCCeEEEEE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNYK----GIAKHLE----KNQNPVWNQIFAFSKE---RLQSNLVEVTV 107 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~i~----~t~nP~wne~f~f~~~---~~~~~~L~v~V 107 (782)
.+.|+|..+.+++........|-||.+.+ |++. ..|+... -...+.|||.+.|++. -+.+..|.|.+
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68899999999998765456788888855 6542 3454322 1236789999999863 23467899999
Q ss_pred EeCCCC----------CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 108 KDKDIG----------KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 108 ~d~d~~----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
|+.... ++..||.+.++|-+.. |.-. .|...+.+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~L~-~G~~~L~lW~~~ 136 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GVLR-QGSLLLGLWPPS 136 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcch--------------------hhhc-cCCEEEEeccCC
Confidence 997654 2357777777665532 2111 388888888654
No 272
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.95 E-value=1.6 Score=36.53 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=49.6
Q ss_pred CCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEcccc
Q 045512 61 LDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEV 128 (782)
Q Consensus 61 ~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l 128 (782)
++-.+.+++++ ...+|.... ..+..|++.|.+.++. +..|+|.||=+|. ..+-|-..+-|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 57789999998 477887665 3689999999999887 5789999988764 34667777777774
No 273
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.73 E-value=1.2 Score=42.26 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=58.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eecccccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLV----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~----~kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 274 (782)
++|.+....++... .....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 67888888777541 1223566777644 4442 23333321 368999999999753 244678999999987
Q ss_pred CCC--CCceeEEEEEeCCCc
Q 045512 275 GPG--KDEILGREFIPVRNV 292 (782)
Q Consensus 275 ~~~--~d~~lG~~~i~l~~l 292 (782)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 568999999998764
No 274
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.04 E-value=1.1 Score=43.13 Aligned_cols=90 Identities=23% Similarity=0.271 Sum_probs=62.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeee----ecccc---cCCCCCCcccceeEEEec---CCCCCeEEEEE
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVR----VTRPS---HVRSVNPVWNEEHMFVAS---EPFEDLIIVTV 270 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~~----kT~~~---~~~t~nP~wne~f~f~v~---~~~~~~L~i~V 270 (782)
.+.|+|.++.+++........|-||.+.+ |++.. .|+.. +.-...+.|||...|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999987665556788888855 55433 33321 111235779999998764 24467899999
Q ss_pred EEccCCC---------CCceeEEEEEeCCCc
Q 045512 271 EDRIGPG---------KDEILGREFIPVRNV 292 (782)
Q Consensus 271 ~d~d~~~---------~d~~lG~~~i~l~~l 292 (782)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 457899999998664
No 275
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.83 E-value=2.3 Score=39.54 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=51.4
Q ss_pred eeccccCC-CCCeeccEEEEEec--c-CCCCeEEEEEEeCCCC-CC----ceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 75 IAKHLEKN-QNPVWNQIFAFSKE--R-LQSNLVEVTVKDKDIG-KD----DFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 75 ~T~~i~~t-~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.|+...-+ .++.|||.+.|++. + +....|.|.||+.+.. .+ ..||.+.++|-+... .|
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~-------------~L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG-------------QL 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS-------------BB
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC-------------cc
Confidence 66666666 79999999999863 3 4568899999998876 43 689999988776522 12
Q ss_pred ecCCCCcccceEEEEEEEEcccCCc
Q 045512 146 EDRKGDKITQGEIMLAVWIGTQADE 170 (782)
Q Consensus 146 ~~~~~~~~~~G~l~l~~~~~~~~d~ 170 (782)
. .|...+.+|-....+.
T Consensus 90 -------~-~G~~~L~lW~~~~~~~ 106 (142)
T PF00792_consen 90 -------R-QGPQKLSLWPDEEPDP 106 (142)
T ss_dssp -------E-EEEEEEE-EET-TTSS
T ss_pred -------c-CCCEEEEEEcCCCCcc
Confidence 1 3999999988755443
No 276
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=89.71 E-value=0.73 Score=47.05 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=61.7
Q ss_pred ccccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCC
Q 045512 35 LVEQMHYLFVNVVKARNLPVMD--VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKD 111 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d 111 (782)
++...|.|.++++.+++|.... .+-+-+-||++....+ +.+|.+.....-=.|.|+|..++.. ...+.+-||.++
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~ 123 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWP 123 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecC
Confidence 4446789999999999997543 3557789999999875 7788888777778999999998766 467889998886
Q ss_pred CC
Q 045512 112 IG 113 (782)
Q Consensus 112 ~~ 113 (782)
.-
T Consensus 124 pq 125 (442)
T KOG1452|consen 124 PQ 125 (442)
T ss_pred ch
Confidence 54
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.35 E-value=3 Score=38.74 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=39.2
Q ss_pred eeccccCC-CCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCcCC----CccEEEEEecccc
Q 045512 404 RTRTILDT-LDPRWNEQYTWEVY--D-P-CTVITIGVFDNCHVNGSKDDAID----QRIGKVRIRLSTL 463 (782)
Q Consensus 404 ~T~~~~~t-~nP~wne~~~f~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~d----~~lG~~~i~l~~l 463 (782)
.|..+.-+ .++.|||.++|++. + | ...|.|+||+.+... .. ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEEEEEEeECC
Confidence 56555555 79999999999976 3 3 668999999876532 22 6899999999875
No 278
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=88.23 E-value=0.2 Score=58.53 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=81.3
Q ss_pred CcEEEEEECCE-EEeeccccCC-CCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcE
Q 045512 391 DAYCVAKYGNK-WIRTRTILDT-LDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL 468 (782)
Q Consensus 391 dpyv~v~~~~~-~~~T~~~~~t-~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 468 (782)
++|+.+.+... ..+|..+++. .+|.|.+.|+..+......+++.|-+.+..| .-..+|.+.++...+..+..
T Consensus 139 e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 139 ENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred cchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhcccc
Confidence 89999999764 4688888877 7999999998888888889999998888764 57899999999999999888
Q ss_pred EEEEEEceeeCCCCCccccEEEEEEEEEEC
Q 045512 469 YTHYYPLLVLTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 469 ~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
...|+++.....+..++.-.+.+.+.|.+.
T Consensus 213 ~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 213 IGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred ccceeeeeccCCccccCCcccceEEeeEee
Confidence 899999987655433333355666666554
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.14 E-value=2.8 Score=36.38 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=49.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCCC
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKDI 112 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d~ 112 (782)
+.+.+..+.+.........++-||.+.+ |++ ...|+.+.....+.|||...|++. + +....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5677888888776543333578888855 554 335666665667999999999753 2 346789999998643
No 280
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=86.95 E-value=6.7 Score=32.95 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=56.9
Q ss_pred CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEE
Q 045512 391 DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLY 469 (782)
Q Consensus 391 dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~ 469 (782)
+..|++++.|. ..+|.-.. ..+..|++.|++.+.. +..|+|.||=.|. -.+=|-..+.|.+...
T Consensus 10 eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---------RslCav~~lrLEd~~~---- 74 (98)
T cd08687 10 EVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---------RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred ceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---------hhhhhheeeEhhhhcc----
Confidence 77899999885 45666543 3578899999999875 5789999997763 2355666777777322
Q ss_pred EEEEEceeeCCCCCccccEEEEEEEE
Q 045512 470 THYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 470 ~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
....+|. .+|.+..++.|
T Consensus 75 ~~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 75 EVQLDME--------PQLCLVAELTF 92 (98)
T ss_pred cceeccc--------cccEEEEEEEe
Confidence 2233443 35888887776
No 281
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=85.05 E-value=2.7 Score=48.07 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=46.3
Q ss_pred HHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhccCCCCCCC-CCCcchh
Q 045512 703 DLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSK-MPSVPVN 769 (782)
Q Consensus 703 ~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~lr~P~~~~~-~~~~~~~ 769 (782)
.++.+.-.|.-|-+|++|+.|..|+++-+++.++=+++|.-+++|+ ..+.+|..|.- +|+.+..
T Consensus 107 ~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~---~li~~P~~r~~lFPpap~a 171 (642)
T PF11696_consen 107 GLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLI---ALILSPPARSILFPPAPPA 171 (642)
T ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcccccccCCCCCcc
Confidence 3445556677788999999999999988888888888898555544 33456777764 4665543
No 282
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.18 E-value=9.5 Score=37.21 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=33.3
Q ss_pred eeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCCC
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~~ 113 (782)
.++|.+.+...+|.|+|++.+.+. ......|.|.+++....
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~ 96 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN 96 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccc
Confidence 578889899999999999998764 44577899999887543
No 283
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=83.26 E-value=9.8 Score=37.00 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=32.3
Q ss_pred eeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCC
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDI 112 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~ 112 (782)
.++|.+.+.+.+|.|||++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 568999999999999999998764 3456789998887643
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=83.01 E-value=3.7 Score=40.06 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=34.8
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 402 WIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 402 ~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
.+.|.+.+++.+|.|+|+|.+.++. +...|.|++++-..-. +..++..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence 4688889999999999999999984 3558999999976432 11122789999999987
No 285
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=82.37 E-value=9.2 Score=33.56 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=50.2
Q ss_pred EEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--------CceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccccc
Q 045512 393 YCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--------CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE 464 (782)
Q Consensus 393 yv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--------~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 464 (782)
||.+.+-.....|..+....+|.+|-+-.|.|... ...+.|+++..-. .....||.++|++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-------~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-------SDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-------S-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-------CCeEEEEEEEeechhhh
Confidence 66666655444444444588999999888887632 3479999988542 24679999999999985
Q ss_pred C--CcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 465 T--DRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 465 ~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
. +........|.+.. | ..-|.|...+++.
T Consensus 75 ~~~~~~i~~~~~l~g~~--~-~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 75 ESNGERIHGSATLVGVS--G-EDFGTLEYWIRLR 105 (107)
T ss_dssp H--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred cCCCceEEEEEEEeccC--C-CeEEEEEEEEEec
Confidence 2 33456666776543 2 2459998888763
No 286
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=80.13 E-value=36 Score=32.62 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCcEEEEEECCee-eecccccC-CCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCC
Q 045512 223 PDAYVKIQLGNLV-RVTRPSHV-RSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300 (782)
Q Consensus 223 ~dpyv~v~lg~~~-~kT~~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~ 300 (782)
..-|+++.++++. .+|+...- ..-.-.|||.|.+.+.. ..+.|.++||.... ..+..|+.+.+++-...... ...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~-~~~ 113 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHT-STD 113 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccc-ccc
Confidence 5678999998864 44444321 12234578999998866 46789999998765 78899999999986654321 111
Q ss_pred CCCCeeEEccCC
Q 045512 301 LPDPRWFNLHKP 312 (782)
Q Consensus 301 ~~~~~w~~L~~~ 312 (782)
.....|+.....
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114456655544
No 287
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=79.27 E-value=7.2 Score=37.68 Aligned_cols=62 Identities=8% Similarity=0.107 Sum_probs=43.5
Q ss_pred EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 401 KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 401 ~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
..+.|.|.+++.+|.|+|++.+.++- ....|.|++++-+.-....+......+|.+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 46788899999999999999998873 345799999986542100011234568888777754
No 288
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.56 E-value=6.8 Score=38.19 Aligned_cols=59 Identities=8% Similarity=0.144 Sum_probs=42.7
Q ss_pred EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecc
Q 045512 401 KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLS 461 (782)
Q Consensus 401 ~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~ 461 (782)
..++|.+.++..+|.|+|++.+.++- ....|.+++++...-..+ +.....+|.+-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~k--d~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAK--DKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccccc--CCCCCceEEEEEeee
Confidence 46889999999999999999999873 356899999886532111 113356888777774
No 289
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=78.31 E-value=13 Score=32.10 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=44.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeee----ecccccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVR----VTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 274 (782)
+.+.+....+.........++-||++.+ |++.. .|+.+. ....+.|||-..|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556666666654433333578888754 55432 344333 2556899999999764 234678999999864
No 290
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=76.98 E-value=6.3 Score=38.30 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=40.6
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecc
Q 045512 402 WIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLS 461 (782)
Q Consensus 402 ~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~ 461 (782)
.++|.+.+++.+|.|||++.+.++- ....|.+++++...-. + .....+|.+-++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~---k-~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD---K-GEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc---C-CCCCceEEEEEeec
Confidence 4689999999999999999999873 3557999888754321 1 11256777777764
No 291
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=75.56 E-value=6.2 Score=43.11 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=32.1
Q ss_pred HHHHHHHHhhHH---HHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhh
Q 045512 697 LQTVVGDLASQC---ERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPF 742 (782)
Q Consensus 697 vQ~~~~~~a~~~---e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~ 742 (782)
+=..|+.+-.++ +++.++++|++|..|..++++++.+++..++..+
T Consensus 15 l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~ 63 (359)
T PF06398_consen 15 LSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLL 63 (359)
T ss_pred HHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 334455555555 7888889999999888777777777766665433
No 292
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=75.55 E-value=7.8 Score=37.78 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=32.7
Q ss_pred eeeeccccCCCCCeeccEEEEEecc--CCCCeEEEEEEeCCCC--C--CceeEEEEEEccc
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKER--LQSNLVEVTVKDKDIG--K--DDFVGRVTFDLFE 127 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~~--~~~~~L~v~V~d~d~~--~--d~~lG~~~i~l~~ 127 (782)
.+.|.+...+.+|.|+|+|.+.+.. .....|.|++++...- + +..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4567888889999999999988753 3457899999997654 2 2678888777666
No 293
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=74.31 E-value=16 Score=35.12 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=52.0
Q ss_pred CcEEEEEECCEE-Eeecccc--CCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccC
Q 045512 391 DAYCVAKYGNKW-IRTRTIL--DTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET 465 (782)
Q Consensus 391 dpyv~v~~~~~~-~~T~~~~--~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
.-|+++.++++. .+|+... ....-.|||.|.+.+...-..|.|+||..... .+..|+++.|++-....
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~-------~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL-------SDRLLAEVFVPVPGSTV 108 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc-------cceEEEEEEeeCCCCcc
Confidence 569999998865 4555432 23344669999999987668999999998753 68999999999887643
No 294
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=73.26 E-value=32 Score=36.11 Aligned_cols=109 Identities=9% Similarity=0.104 Sum_probs=74.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCC--ccccEEEEEEeCCCceEEEEEEeCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDP--RWNEQYTWEVYDPCTVITIGVFDNCHVN 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP--~wne~~~f~v~~~~~~l~i~V~d~~~~~ 442 (782)
.-.|-|.|.+..++. .+ ..|+.++.|...++|..+.-+..= .-.+.....+..-...|+|.||-....
T Consensus 57 kF~LLVeI~EI~~i~--------k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv- 127 (508)
T PTZ00447 57 TFYLLVKINEIFNIN--------KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT- 127 (508)
T ss_pred eeeEEEEehhhhccc--------cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-
Confidence 356777777776664 23 789999999999988766433322 234555566666667899999987654
Q ss_pred CCCCCcCCCccEEEEEeccc--ccCCcEEEEEEEceeeCCCCCccccEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLST--LETDRLYTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+..-||.+.|++.. +...-+.+.||-+.. .+...++|.|++
T Consensus 128 ------kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k----DGq~~cRIqLSF 170 (508)
T PTZ00447 128 ------KKVHIGQIKIDINASVISKSFPKNEWFVCFK----DGQEICKVQMSF 170 (508)
T ss_pred ------ceeEEEEEEecccHHHHhccCCccceEEEec----CCceeeeEEEEe
Confidence 57899999999887 334444578999952 223457777764
No 295
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=72.50 E-value=11 Score=32.99 Aligned_cols=95 Identities=8% Similarity=0.079 Sum_probs=49.7
Q ss_pred EEEEEECCe-eeeeccccCCCCCeeccEEEEEecc-------CCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCC
Q 045512 64 YVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKER-------LQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPD 135 (782)
Q Consensus 64 yv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~-------~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~ 135 (782)
||.+.+-.. ...|.++. +.||.+|-+-.|.+.. ++...+.|+++..-...-..+|.+.+++.++..+..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~-- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG-- 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC--
Confidence 555666554 45566665 8999999999888642 346789999999874477899999999999985432
Q ss_pred CCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 136 SPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 136 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
...-.-..|.+.+|.. .|.|...+.+
T Consensus 79 -~~i~~~~~l~g~~~~~--~g~l~y~~rl 104 (107)
T PF11618_consen 79 -ERIHGSATLVGVSGED--FGTLEYWIRL 104 (107)
T ss_dssp ---EEEEEEE-BSSS-T--SEEEEEEEEE
T ss_pred -ceEEEEEEEeccCCCe--EEEEEEEEEe
Confidence 1123334565655552 3887766543
No 296
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=72.15 E-value=22 Score=40.06 Aligned_cols=103 Identities=15% Similarity=0.266 Sum_probs=73.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
-.++|.|.+.+||+... .. -.||..++.|++.+|.... ...|.|.-+-.|.-..|-..+.|.+|.+..- -
T Consensus 341 ~smevvvmevqglksva-----pnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestg---v 411 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVA-----PNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTG---V 411 (1218)
T ss_pred eeeeEEEeeeccccccC-----CCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecce---e
Confidence 35778899999998432 23 7899999999999887653 4579999888888888878899999987530 0
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCC
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 480 (782)
-.-.|.-||++.+.-..- ......|+.+...+.
T Consensus 412 laledkelgrvil~ptpn--s~ks~ewh~mtvpkn 444 (1218)
T KOG3543|consen 412 LALEDKELGRVILQPTPN--SAKSPEWHTMTVPKN 444 (1218)
T ss_pred EEeechhhCeEEEecCCC--CcCCccceeeecCCC
Confidence 023678899998765432 222356887765443
No 297
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.47 E-value=9.8 Score=45.04 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHH-HhhhhhhhhHhhhhhh
Q 045512 723 TFIFLIFSFIWAVF-SYVTPFQVVAVLIGLY 752 (782)
Q Consensus 723 s~~~~~~l~~~~~~-~~~vP~r~i~l~~g~~ 752 (782)
|-+|+++.+.+-++ ++|||.+||+++...|
T Consensus 76 ~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 76 SVFFVCIAFTSDLICLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333344 4568999999885443
No 298
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=71.27 E-value=16 Score=35.44 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=44.1
Q ss_pred EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCC---CCCcCCCccEEEEEeccc
Q 045512 401 KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGS---KDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 401 ~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~---~~~~~d~~lG~~~i~l~~ 462 (782)
....|.|..++.+|.|+|++.+.++- +..-|.|+.++-+-...+ ........+|.+.+||-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46788899999999999999988873 355799999997532111 111234568888877765
No 299
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=66.19 E-value=62 Score=34.06 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=79.3
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCC--cccceeEEEecCCCCCeEEEEEEEccCC
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNP--VWNEEHMFVASEPFEDLIIVTVEDRIGP 276 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP--~wne~f~f~v~~~~~~~L~i~V~d~d~~ 276 (782)
.+...|-|.|.+..++.. ....|+.+..|.....|..+.. +..- .-.+.....+. .++..|++.++-. ++
T Consensus 55 HRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpT-sKK~RI~IqqRV~IkIR-QcDnTLkI~lfKK-kL 126 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPT-NKKNRIHIDQRVDIKIR-QCDETLRVDLFTT-KL 126 (508)
T ss_pred cceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEcccccc-CcCceEEEeeeeeeeee-ecCceEEEEEEec-cc
Confidence 455678888888766543 3578999999998888866543 2211 22334444443 3467899999876 45
Q ss_pred CCCceeEEEEEeCCC-cccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccc
Q 045512 277 GKDEILGREFIPVRN-VPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYH 342 (782)
Q Consensus 277 ~~d~~lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~ 342 (782)
-+...||.+.+++.. +. +...+..+||.+...+ ...+++.++..--..|.
T Consensus 127 vkk~hIgdI~InIn~dII----dk~FPKnkWy~c~kDG------------q~~cRIqLSFhKL~kya 177 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVI----SKSFPKNEWFVCFKDG------------QEICKVQMSFYKIQKYA 177 (508)
T ss_pred cceeEEEEEEecccHHHH----hccCCccceEEEecCC------------ceeeeEEEEehhhhhcc
Confidence 577899999999875 44 4456788999996542 44577777665434443
No 300
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=65.67 E-value=35 Score=33.01 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=34.8
Q ss_pred eeeccccCCCCCeeccEEEEEecc--CCCCeEEEEEEeCCCC------CCceeEEEEEEcc
Q 045512 74 GIAKHLEKNQNPVWNQIFAFSKER--LQSNLVEVTVKDKDIG------KDDFVGRVTFDLF 126 (782)
Q Consensus 74 ~~T~~i~~t~nP~wne~f~f~~~~--~~~~~L~v~V~d~d~~------~d~~lG~~~i~l~ 126 (782)
++|.+..+ .+|.|+|+|.+.+.. .....|.|++++...- ....+|.+.++|-
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 34444444 999999999998743 2467899999997643 2445555555543
No 301
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=63.40 E-value=46 Score=36.15 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=62.9
Q ss_pred CcEEEEEECCEEEeeccccC----CCCC-cc-ccEEEEEEe--------CC------CceEEEEEEeCCCCCCCCCCcCC
Q 045512 391 DAYCVAKYGNKWIRTRTILD----TLDP-RW-NEQYTWEVY--------DP------CTVITIGVFDNCHVNGSKDDAID 450 (782)
Q Consensus 391 dpyv~v~~~~~~~~T~~~~~----t~nP-~w-ne~~~f~v~--------~~------~~~l~i~V~d~~~~~~~~~~~~d 450 (782)
..||+|++.+-..+|..+.= +.+| .= +-.-.|.+. .+ ...|+|.||--..=..-+-+.+.
T Consensus 37 pCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~~ 116 (460)
T PF06219_consen 37 PCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNSG 116 (460)
T ss_pred CeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccccc
Confidence 78999999998777776531 1121 11 112233332 11 24799999985431100002467
Q ss_pred CccEEEEEeccccc----CCcEEEEEEEceeeCCCCCc-cccEEEEEEEEEEC
Q 045512 451 QRIGKVRIRLSTLE----TDRLYTHYYPLLVLTPSGLK-KNGELHLALRFTCT 498 (782)
Q Consensus 451 ~~lG~~~i~l~~l~----~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~~~ 498 (782)
.+||+++|+|.-=- ....++.|..+-..+.++.+ ...+|||.++.++.
T Consensus 117 klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 117 KLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred eEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 89999999997321 12335789988654332222 24689999887654
No 302
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=60.05 E-value=17 Score=29.32 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=34.2
Q ss_pred ccccCCCCCCCCCCCCeEEEeecCCCCc--ccceEEEEEEEEcccCCcccccc
Q 045512 125 LFEVPHRVPPDSPLAPQWYRLEDRKGDK--ITQGEIMLAVWIGTQADESFSEA 175 (782)
Q Consensus 125 l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~~G~l~l~~~~~~~~d~~~~~~ 175 (782)
+..+..+ +++...++|..|.++.... .. |.|.+++.+..++|+.....
T Consensus 3 lgtVY~q--P~H~~~~KW~~L~dP~D~~~G~k-GYlKv~i~Vlg~GD~~~~~~ 52 (72)
T PF08151_consen 3 LGTVYNQ--PDHQFYRKWALLTDPDDTSAGVK-GYLKVDISVLGPGDEPPVEK 52 (72)
T ss_pred eeeeecC--CCCeeEeceEEecCCCCCccCCc-eEEEEEEEEEcCCCcCCCCC
Confidence 4444443 3567889999999887432 33 99999999998888765433
No 303
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=56.69 E-value=24 Score=42.08 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=68.8
Q ss_pred CCcEEEEEECCe-eeeeccccCC-CCCeeccEEEEEeccCCCCeEEEEEEeCCCCC-CceeEEEEEEccccCCCCCCCCC
Q 045512 61 LDPYVEVKLGNY-KGIAKHLEKN-QNPVWNQIFAFSKERLQSNLVEVTVKDKDIGK-DDFVGRVTFDLFEVPHRVPPDSP 137 (782)
Q Consensus 61 ~dPyv~v~~~~~-~~~T~~i~~t-~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~-d~~lG~~~i~l~~l~~~~~~~~~ 137 (782)
.++|+.+.+... ..+|..+.+. .+|.|.+.|....... ...+.+.|.+.+... ...+|.+.++...+..+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~----- 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH----- 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccc-----
Confidence 488999999874 5578877777 5999999998877664 467899998888775 889999999999998853
Q ss_pred CCCeEEEeecCCCCc
Q 045512 138 LAPQWYRLEDRKGDK 152 (782)
Q Consensus 138 ~~~~w~~L~~~~~~~ 152 (782)
....|+++.+.++..
T Consensus 212 ~~~~~~~Il~~d~~~ 226 (887)
T KOG1329|consen 212 RIGGWFPILDNDGKP 226 (887)
T ss_pred cccceeeeeccCCcc
Confidence 367899998776543
No 304
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=56.49 E-value=30 Score=33.45 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=39.4
Q ss_pred eccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 405 TRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 405 T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
|.++....+|.|+|+|.+.++. +...|.|++++-..-... +......+|.+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~-~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQ-GDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEcccccccc-CCCccceEEEEEEeccc
Confidence 3344444999999999998873 356899999997642100 12346788988888875
No 305
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=53.33 E-value=16 Score=40.20 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=33.3
Q ss_pred ccEEEEEeccc-ccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 452 RIGKVRIRLST-LETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 452 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
.+|.+.|++.. +..+.....|||+.+...++. ..|.+ ++++++-
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeee
Confidence 48999999999 777788899999998655443 34777 6666643
No 306
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=52.42 E-value=1.3e+02 Score=34.15 Aligned_cols=121 Identities=22% Similarity=0.288 Sum_probs=81.2
Q ss_pred ecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC
Q 045512 33 YDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI 112 (782)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~ 112 (782)
...+.-...+.|.|.+..+|..... .-=.||...+.|++.+|.... ..-|.|+..-.|....+ .+.+.+.+|-...
T Consensus 334 ksdv~la~smevvvmevqglksvap--nrivyctmevegeklqtdqae-askp~wgtqgdfstthp-lpvvkvklftest 409 (1218)
T KOG3543|consen 334 KSDVSLALSMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP-LPVVKVKLFTEST 409 (1218)
T ss_pred ccceeEEeeeeEEEeeeccccccCC--CeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC-CceeEEEEEeecc
Confidence 3333333456888899999986542 234699999999988887654 56799999888876664 4788999988765
Q ss_pred C----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 113 G----KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 113 ~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
. .|.-+|++-+. +.+.+...+.|+.+.-+++.....=.|.+.+..
T Consensus 410 gvlaledkelgrvil~-------ptpns~ks~ewh~mtvpknsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 410 GVLALEDKELGRVILQ-------PTPNSAKSPEWHTMTVPKNSQDQDLKIKLAVRM 458 (1218)
T ss_pred eeEEeechhhCeEEEe-------cCCCCcCCccceeeecCCCCcCccceEEEEEec
Confidence 4 77788887654 223344567899998776543211344444433
No 307
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=50.42 E-value=75 Score=37.88 Aligned_cols=104 Identities=17% Similarity=0.273 Sum_probs=67.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE----CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKY----GNKW----IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITI 433 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~----~~~~----~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i 433 (782)
..++|+++.+.++-- ... |-+|.|+. |++. ..|.-+..+.+|.||+..+|++. | | ...|-|
T Consensus 343 ~~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 467888888887642 123 77777765 4543 34555566889999999999887 3 2 457778
Q ss_pred EEEeCCCC----------CCCCCCcCCCccEEEEEeccc----ccCCcEEEEEEEce
Q 045512 434 GVFDNCHV----------NGSKDDAIDQRIGKVRIRLST----LETDRLYTHYYPLL 476 (782)
Q Consensus 434 ~V~d~~~~----------~~~~~~~~d~~lG~~~i~l~~----l~~~~~~~~~~~L~ 476 (782)
.||--... +.++.++.+-.||.|.+.|-+ |..|+..-+-|+..
T Consensus 417 ~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~ 473 (1076)
T KOG0904|consen 417 AIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSV 473 (1076)
T ss_pred eeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCC
Confidence 77765211 111224566789999988877 46677665655543
No 308
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=48.53 E-value=1.3e+02 Score=32.79 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=61.2
Q ss_pred CCcEEEEEECCeeeeeccccCCC----CC-e---eccEEEEEecc---CC--------CCeEEEEEEeCCC-------CC
Q 045512 61 LDPYVEVKLGNYKGIAKHLEKNQ----NP-V---WNQIFAFSKER---LQ--------SNLVEVTVKDKDI-------GK 114 (782)
Q Consensus 61 ~dPyv~v~~~~~~~~T~~i~~t~----nP-~---wne~f~f~~~~---~~--------~~~L~v~V~d~d~-------~~ 114 (782)
+..||+|++.+...+|..+.--. +| . ---.|+++-.+ +. ...|+|.||.-.. .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 45699999999877777555211 21 1 12345554221 11 1569999999543 16
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc--ccceEEEEEEEEc
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK--ITQGEIMLAVWIG 165 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~~G~l~l~~~~~ 165 (782)
..+||.+.++|. +.........+..-|..+-..++.. ....+|++.+...
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~E 167 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAE 167 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEecc
Confidence 689999999987 3322211123456798886654211 1126788877543
No 309
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=47.92 E-value=49 Score=32.02 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=31.7
Q ss_pred eeeeccccCCCCCeeccEEEEEecc--CCCCeEEEEEEeCCC
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKER--LQSNLVEVTVKDKDI 112 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~~--~~~~~L~v~V~d~d~ 112 (782)
...|.|...+.+|.|+|++...+.. ....-|.|+.++.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 5678899999999999999887643 345789999988643
No 310
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=47.89 E-value=1.8e+02 Score=27.76 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=54.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----------Ce-eeecccccCC----CCCCcccceeEEEecC--CC-CCe
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLG----------NL-VRVTRPSHVR----SVNPVWNEEHMFVASE--PF-EDL 265 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg----------~~-~~kT~~~~~~----t~nP~wne~f~f~v~~--~~-~~~ 265 (782)
+.=.|..|.+... .+-||+..+. .. ...|...... +..-.||..|++.+.. +. -..
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 3446778876532 4678887763 23 4566555431 3345799888776643 32 257
Q ss_pred EEEEEEEccCCCCCceeEEEEEeCCC
Q 045512 266 IIVTVEDRIGPGKDEILGREFIPVRN 291 (782)
Q Consensus 266 L~i~V~d~d~~~~d~~lG~~~i~l~~ 291 (782)
|.++||..|..+++.+.|...+.|-.
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeCC
Confidence 99999999999999999887776643
No 311
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=47.77 E-value=22 Score=28.62 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=31.1
Q ss_pred eCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccc
Q 045512 288 PVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAG 340 (782)
Q Consensus 288 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~ 340 (782)
++..+..+ +++....+|..|..+.+. .....|++.+++++.|.
T Consensus 2 DlgtVY~q--P~H~~~~KW~~L~dP~D~--------~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYNQ--PDHQFYRKWALLTDPDDT--------SAGVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeecC--CCCeeEeceEEecCCCCC--------ccCCceEEEEEEEEEcC
Confidence 44555554 678889999999988632 23456999999998764
No 312
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=44.11 E-value=64 Score=31.38 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.6
Q ss_pred eeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCC
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKD 111 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d 111 (782)
...|.|...+.+|.|+|++-+.+. .....-|.|+.|+.+
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 567889999999999999988754 334678999999875
No 313
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=42.48 E-value=2.7e+02 Score=26.51 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=54.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----------Ce-eeeeccccC-----CCCCeeccEEEEEec--cCC-CCe
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLG----------NY-KGIAKHLEK-----NQNPVWNQIFAFSKE--RLQ-SNL 102 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----------~~-~~~T~~i~~-----t~nP~wne~f~f~~~--~~~-~~~ 102 (782)
+.=.|..|.+... .+-||+..+. .. ..+|.+... +..-.||--|.+... .+. -+.
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 4556788886653 2568887772 12 455655543 335689988877653 333 378
Q ss_pred EEEEEEeCCCC-CCceeEEEEEEcc
Q 045512 103 VEVTVKDKDIG-KDDFVGRVTFDLF 126 (782)
Q Consensus 103 L~v~V~d~d~~-~d~~lG~~~i~l~ 126 (782)
|.|+||..|.. ++.+.|...+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 99999999999 8899998877763
No 314
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=42.44 E-value=1.5e+02 Score=27.39 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEe------------ccCCCCeEEEEEEe
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSK------------ERLQSNLVEVTVKD 109 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~------------~~~~~~~L~v~V~d 109 (782)
|.|+-+.|=|.--. ..-|-|..|++-|+-++|+.....-==.++|.|.|.. +.++...+.|+++.
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 55666666543322 2348999999999999998766444446799999962 23456789999988
Q ss_pred CCCCCCceeEEEEEEccccCC
Q 045512 110 KDIGKDDFVGRVTFDLFEVPH 130 (782)
Q Consensus 110 ~d~~~d~~lG~~~i~l~~l~~ 130 (782)
...-....++..+-++.|+..
T Consensus 81 l~~~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFLF 101 (140)
T ss_pred EeCCCCcEEEEEeccccceEc
Confidence 665557889998888888865
No 315
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.45 E-value=86 Score=31.69 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhh
Q 045512 703 DLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTP 741 (782)
Q Consensus 703 ~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP 741 (782)
.++..+-.++.++.=+|+..+..+.+.+++++.+.-+.-
T Consensus 132 ~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn 170 (230)
T KOG1792|consen 132 EINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFN 170 (230)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555667777788888888888888888877764433
No 316
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=40.17 E-value=99 Score=25.87 Aligned_cols=35 Identities=11% Similarity=0.342 Sum_probs=18.4
Q ss_pred HHHhHhhHHHHHHHHhhHHHHHhhhhcccCchhHH
Q 045512 690 LRSVGGQLQTVVGDLASQCERVQAILCWRDLRATF 724 (782)
Q Consensus 690 l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~s~ 724 (782)
|.+-+..++..-..+...-.+++.-..|+.-+...
T Consensus 36 L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~ 70 (89)
T PF00957_consen 36 LEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYI 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555666667777754433
No 317
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=38.48 E-value=8.3 Score=43.50 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=36.1
Q ss_pred CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeCCC
Q 045512 391 DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIGVFDNCH 440 (782)
Q Consensus 391 dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~V~d~~~ 440 (782)
||+.++.+|...+.+.......+|.+++.-.+.+.+- .-.+.|.+++...
T Consensus 412 ~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~ 463 (975)
T KOG2419|consen 412 DPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLS 463 (975)
T ss_pred CchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHH
Confidence 9999999988777777777788888887766666653 3356666665443
No 318
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=38.41 E-value=10 Score=36.10 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=0.0
Q ss_pred HhhhhcccCchhHHHHHHHHHHHHHHH
Q 045512 711 VQAILCWRDLRATFIFLIFSFIWAVFS 737 (782)
Q Consensus 711 ~~~l~~w~~p~~s~~~~~~l~~~~~~~ 737 (782)
+++++.|+||..|..++.++.++-.++
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~ 27 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLF 27 (169)
T ss_dssp ---------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHH
Confidence 467899999999998776666533333
No 319
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=35.12 E-value=62 Score=25.84 Aligned_cols=34 Identities=24% Similarity=0.691 Sum_probs=21.0
Q ss_pred HHHHhhhcccc--CCchhhHHHHHHHHHHHHcCchhHHHH
Q 045512 583 ICRWFNDICTW--RNPVETVLLHVLFLILVFYPELILPTI 620 (782)
Q Consensus 583 ~~~~~~~~~~W--~~p~~s~~~~~~~~~~~~~~~l~~p~~ 620 (782)
+-.|+..+..| ++|.- |+.++++|+-|-+++..+
T Consensus 4 ~k~w~~~~v~~vAkdP~~----Fl~~vll~LtPlfiisa~ 39 (74)
T PF15086_consen 4 VKAWASYIVEWVAKDPYE----FLTTVLLILTPLFIISAV 39 (74)
T ss_pred hHHHHHHHHHHHHcChHH----HHHHHHHHHhHHHHHHHH
Confidence 34677777888 88954 445777776654444333
No 320
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=35.03 E-value=53 Score=38.15 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=40.5
Q ss_pred HHHHHHHHhhHHHHHhhhhcccCchhHHHHHHHHHHH---HHHHhhhhhhhhHhhhhhhhccCC
Q 045512 697 LQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIW---AVFSYVTPFQVVAVLIGLYMLRHP 757 (782)
Q Consensus 697 vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~---~~~~~~vP~r~i~l~~g~~~lr~P 757 (782)
.+.+|-=+...+..++.+..|.+|..|..|+++.+.+ .-+-|++|.-+++++.+...+||-
T Consensus 492 ~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 492 MKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445566778888999999999998766554432 234677887766666555555553
No 321
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=34.62 E-value=66 Score=38.29 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=46.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC----Ce----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEe
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLG----NY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKD 109 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d 109 (782)
.++|+++++.++... .+-|-+|.|..+ ++ ...|.-+..+.+|.||+...|++. + +....|.|.||.
T Consensus 344 ~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 578888888776532 234677777764 32 245666667889999999999864 3 345678888776
Q ss_pred C
Q 045512 110 K 110 (782)
Q Consensus 110 ~ 110 (782)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 4
No 322
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=34.57 E-value=1.8e+02 Score=26.85 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhHhh-HHHHHHHHh-hHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhh
Q 045512 681 DTVRMRYERLRSVGGQ-LQTVVGDLA-SQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQ 743 (782)
Q Consensus 681 ~~~~~~~~~l~~~~~~-vQ~~~~~~a-~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r 743 (782)
+.+.+|+-+|++|.-- +.+.+...+ .....+++++++.- .+.|.+ ..+.+++++|+-
T Consensus 51 ETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g-~a~Wi~-----tTSallLgvPl~ 109 (137)
T PF04281_consen 51 ETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSG-KALWIV-----TTSALLLGVPLA 109 (137)
T ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHH-----HHHHHHHHHHHH
Confidence 3499999999998765 333333332 33344566665543 233332 234455566764
No 323
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.67 E-value=1.3e+02 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=20.3
Q ss_pred HHHhHhhHHHHHHHHhhHHHHHhhhhcccCchhHHH
Q 045512 690 LRSVGGQLQTVVGDLASQCERVQAILCWRDLRATFI 725 (782)
Q Consensus 690 l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~ 725 (782)
|++=+..+|..-..+-..--+++--+-|.+-+...+
T Consensus 62 L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 62 LDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444556666788988665543
No 324
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=33.23 E-value=19 Score=42.57 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=52.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI 112 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~ 112 (782)
-+|.+.+.+.+|..|... .+-||...+.. .+.+|.++.+|..|.||+.|..++..- +.+++..++++.
T Consensus 757 ~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s--qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES--QSSRLEKTEKST 829 (1112)
T ss_pred cccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc--cccchhhhcccc
Confidence 356789999999988753 36788887753 367899999999999999999887763 445566666653
No 325
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=32.92 E-value=1e+02 Score=27.18 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=41.6
Q ss_pred ceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccccc--------------CCcEEEEEEEceeeCCCCCccccEEEEEEE
Q 045512 429 TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE--------------TDRLYTHYYPLLVLTPSGLKKNGELHLALR 494 (782)
Q Consensus 429 ~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
..|.+.+++-..- ........||.+.|++.+.. ........|+|.+.. | ...|.|.+.++
T Consensus 29 ~pl~i~~~~~~~~---~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~-~~~G~I~l~iR 102 (112)
T PF14924_consen 29 FPLYIVVKKVPPG---FPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--G-NPVGEISLYIR 102 (112)
T ss_pred CceEEEEEecCCC---CCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--C-ceeeeEEEEEE
Confidence 4677877664320 00125678999999998862 123456789998642 3 35699999998
Q ss_pred EEE
Q 045512 495 FTC 497 (782)
Q Consensus 495 ~~~ 497 (782)
+++
T Consensus 103 Lsc 105 (112)
T PF14924_consen 103 LSC 105 (112)
T ss_pred Eec
Confidence 854
No 326
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.76 E-value=18 Score=41.83 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=39.4
Q ss_pred CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 045512 391 DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCH 440 (782)
Q Consensus 391 dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~ 440 (782)
|||+-|.+.-+. ..+.+.+.+..|.|++.|...+.. ...+.|.|+....
T Consensus 29 ~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 29 QPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSP 78 (694)
T ss_pred hhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCC
Confidence 899999886544 466678889999999999999664 4678899998754
No 327
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=31.73 E-value=3.9e+02 Score=24.10 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=54.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeee-eeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCC--CCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-IAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDI--GKD 115 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~-~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~--~~d 115 (782)
.|.++=+.-.++|.-+..+.|.||++|.-++... .|........-.=...+.+.+. -+-..-+.|++|+... ..+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4555556667777666678999999999988754 3333222211111222333322 1113568999999874 377
Q ss_pred ceeEEEEEEccccC
Q 045512 116 DFVGRVTFDLFEVP 129 (782)
Q Consensus 116 ~~lG~~~i~l~~l~ 129 (782)
+.+.++.+.-.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 88888888766665
No 328
>PHA01159 hypothetical protein
Probab=31.47 E-value=1.4e+02 Score=26.32 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHHHhHhhHHHHHHHHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhccCCCCCCCCCCc
Q 045512 687 YERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSV 766 (782)
Q Consensus 687 ~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~lr~P~~~~~~~~~ 766 (782)
|..++.++...|..++.+++..+-+++.|-|-.-+.-..-+...+ ..+=+.+---|.++--.|++ .-
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~~~~i~~~l~~~I-~~i~~sY~~A~~Ll~~iG~~------------s~ 71 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGAMWLISVWLDILI-ASIQIAYKIAQLLLEEYGVY------------TM 71 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHH------------HH
Confidence 567788888889999999999888888887654443322222221 12222222334344344554 55
Q ss_pred chhhhccCCCC
Q 045512 767 PVNFFKSFPSK 777 (782)
Q Consensus 767 ~~~~~~r~ps~ 777 (782)
+.+.+++|||+
T Consensus 72 i~s~fnaLPse 82 (114)
T PHA01159 72 VESRFNALPSD 82 (114)
T ss_pred HHHHHHhCCHH
Confidence 66777777775
No 329
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=31.25 E-value=21 Score=42.10 Aligned_cols=91 Identities=21% Similarity=0.284 Sum_probs=62.6
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLTDAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNC 439 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~ 439 (782)
..|.+.+.+++|.+|.. ...-||.... ...+.+|+++.+|.-|.||+.++.++... +..+|..++.+
T Consensus 757 ~ygflh~~vhsat~lkq-------s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-------SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES-QSSRLEKTEKS 828 (1112)
T ss_pred cccceeeeecccccccc-------ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc-cccchhhhccc
Confidence 46899999999999973 1267888754 23568999999999999999999988753 45667777665
Q ss_pred CCCC----CCCCcCCCccEEEEEecccc
Q 045512 440 HVNG----SKDDAIDQRIGKVRIRLSTL 463 (782)
Q Consensus 440 ~~~~----~~~~~~d~~lG~~~i~l~~l 463 (782)
.-.. ...-.++...|+.++.+.--
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~~~ 856 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLDPQ 856 (1112)
T ss_pred chHHHhhhccchhhcccccccccccCcc
Confidence 3110 00023556667766665543
No 330
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=31.11 E-value=1.6e+02 Score=30.49 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhh
Q 045512 683 VRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYM 753 (782)
Q Consensus 683 ~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~ 753 (782)
+.+-++.+..+..+++...+.+.+..+-..+..+-+ ....+-.+.+++++ |+|+-+|.-+||.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~n~~m~~LT~~t~i--flPlt~i~g~fGMN~ 258 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNR----QNRVMKVLTIVTAI--FLPLTFITGIFGMNF 258 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHH--HHHHHHHTTSTTS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHhhCCc
Confidence 444455555555555555555555555555555554 23334444444444 489988888888874
No 331
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.74 E-value=1.3e+02 Score=27.24 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhHhh-HHHHHHHHhh-HHHHHhhhhcccCchhHHHHH
Q 045512 681 DTVRMRYERLRSVGGQ-LQTVVGDLAS-QCERVQAILCWRDLRATFIFL 727 (782)
Q Consensus 681 ~~~~~~~~~l~~~~~~-vQ~~~~~~a~-~~e~~~~l~~w~~p~~s~~~~ 727 (782)
+.+.+|+..+++|... .-+.++..+. .+.-++++|.++- .+.|++.
T Consensus 42 ETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fsg-~a~Wi~t 89 (136)
T KOG4111|consen 42 ETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFSG-KAAWIAT 89 (136)
T ss_pred hhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhcc-chhHHHH
Confidence 4499999999888765 4444444333 3344666766654 3444433
No 332
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.73 E-value=2.6e+02 Score=27.22 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCChHhHHHhhccCCCceeeecc-hhhHHHHHHHHHHHHHHHhhhccccCCchhhHHHH
Q 045512 525 LIDRLRHQAMQIVAARLGRAEPPLRREVVEYMLDVDYHMWSLRK-SKANFQRIMELFSAICRWFNDICTWRNPVETVLLH 603 (782)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ld~~~~~~s~~~-~~~n~~rl~~~~~~~~~~~~~~~~W~~p~~s~~~~ 603 (782)
..+..-.++.+.+...+...-| .+|++ |...||... +..=..|++..+. ..+.-...+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~lst~Rp--W~ef~------d~~~fs~P~s~s~a~sRi~~Nl~----------yF~~NY~~iv~~ 79 (187)
T KOG3142|consen 18 SVESISSRAKQTIQSGLSTRRP--WSEFF------DRSAFSRPRSLSDATSRIKRNLS----------YFRVNYVIIVAI 79 (187)
T ss_pred chhhHHHHHHHHHHHHHhccCC--HHHHH------cccccCCCccHHHHHHHHHHHHH----------HHHHhHHHHHHH
Confidence 3445555666666666655544 44444 555565533 3333444444443 111222344555
Q ss_pred HHHHHHHHcCchh
Q 045512 604 VLFLILVFYPELI 616 (782)
Q Consensus 604 ~~~~~~~~~~~l~ 616 (782)
+++..++++|-.+
T Consensus 80 ~~~~sLi~~P~~L 92 (187)
T KOG3142|consen 80 LLFLSLITHPLSL 92 (187)
T ss_pred HHHHHHHHhHHHH
Confidence 5555567876543
No 333
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.35 E-value=43 Score=38.81 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=61.4
Q ss_pred CCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCC
Q 045512 59 GSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDS 136 (782)
Q Consensus 59 g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~ 136 (782)
...+||+.|.+.-. ...+.+...+.+|.|+++|...+.. ...+.|.|+..... .+.+...+++-.+++... .
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~----~ 99 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL----A 99 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHH----h
Confidence 34689999988753 4466667889999999999999766 56788999888644 555555555444444331 1
Q ss_pred CCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 137 PLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 137 ~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
....-|..++.. |.+...+.+.
T Consensus 100 ~~~~~w~~~~~~-------g~~~~~~~~~ 121 (694)
T KOG0694|consen 100 LEQRLWVLIEEL-------GTLLKPAALT 121 (694)
T ss_pred hhhhhccccccc-------cceeeeeccc
Confidence 123456664331 6666666544
No 334
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=29.28 E-value=2.5e+02 Score=25.93 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCcEEEEEECCeeeecccccCCCCCCcccceeEEEec------------CCCCCeEEEEEEEccCCCCCceeEEEEEeC
Q 045512 222 APDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVAS------------EPFEDLIIVTVEDRIGPGKDEILGREFIPV 289 (782)
Q Consensus 222 ~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~------------~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l 289 (782)
+.|.|..|++-++..+|+.... .---.++|.|.|.-. ....+.+.|+++...... ...|+..+-++
T Consensus 19 ~~~vyL~v~~lg~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~ 96 (140)
T PF14909_consen 19 KGDVYLSVCILGQYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENT 96 (140)
T ss_pred CCCEEEEEEEcccEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEeccc
Confidence 4689999999999999998753 333357899988522 123457889998765433 77888888888
Q ss_pred CCccc
Q 045512 290 RNVPQ 294 (782)
Q Consensus 290 ~~l~~ 294 (782)
+++..
T Consensus 97 rDfLf 101 (140)
T PF14909_consen 97 RDFLF 101 (140)
T ss_pred cceEc
Confidence 88763
No 335
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.26 E-value=3e+02 Score=22.00 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHhhHHHHHhhhhcccC
Q 045512 683 VRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRD 719 (782)
Q Consensus 683 ~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~ 719 (782)
..++.+.+.......+..+..++.-++++.+...|--
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677778899999999999988843
No 336
>PHA02650 hypothetical protein; Provisional
Probab=28.10 E-value=1.7e+02 Score=23.78 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=9.3
Q ss_pred HHHhhHHHHHhhhhcc
Q 045512 702 GDLASQCERVQAILCW 717 (782)
Q Consensus 702 ~~~a~~~e~~~~l~~w 717 (782)
+|..+++|-++.+++=
T Consensus 18 dDFnnFI~VVkSVLtD 33 (81)
T PHA02650 18 DDFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4555666666666643
No 337
>COG4920 Predicted membrane protein [Function unknown]
Probab=27.10 E-value=2.7e+02 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=10.9
Q ss_pred ccCCchhhHHHHHHHHHH-HHcCch
Q 045512 592 TWRNPVETVLLHVLFLIL-VFYPEL 615 (782)
Q Consensus 592 ~W~~p~~s~~~~~~~~~~-~~~~~l 615 (782)
.|+.-.-|-+..++|.++ .++|..
T Consensus 6 n~~rvL~sq~~iilfSlvlsffp~~ 30 (249)
T COG4920 6 NMRRVLISQLSIILFSLVLSFFPAE 30 (249)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444444455555555443 344443
No 338
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.09 E-value=2.5e+02 Score=21.61 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHhhHHHHHhhhhcccCchhHHHHHHHHHHHH
Q 045512 683 VRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIWA 734 (782)
Q Consensus 683 ~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~ 734 (782)
+..++..|-+-+..++..+..+..++|.+.+ +...++|.+.-+.+-..|
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~---FNESFasfLYGl~mna~c 51 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQLNQIHESLSD---FNESFASFLYGLNMNAWC 51 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556677777777789999999998888776 566677776555544433
No 339
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=25.74 E-value=1.3e+02 Score=22.54 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHHHHHhhhhcccCchhHHHH
Q 045512 697 LQTVVGDLASQCERVQAILCWRDLRATFIF 726 (782)
Q Consensus 697 vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~~ 726 (782)
+...=.+++.+.+++|...+|+-|.+..++
T Consensus 9 ~~~id~ei~~~~~~lre~Y~~~FPEL~~lv 38 (53)
T PF08060_consen 9 LDDIDKEINLLHMRLREWYSWHFPELESLV 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHc
Confidence 455667889999999999999999998753
No 340
>PHA02975 hypothetical protein; Provisional
Probab=23.82 E-value=1.9e+02 Score=22.85 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=10.0
Q ss_pred HHHhhHHHHHhhhhcc
Q 045512 702 GDLASQCERVQAILCW 717 (782)
Q Consensus 702 ~~~a~~~e~~~~l~~w 717 (782)
+|..+++|-++.+++=
T Consensus 18 dDF~nFI~vVksVLtd 33 (69)
T PHA02975 18 SDFEDFIDTIMHVLTG 33 (69)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4566666667766644
No 341
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.66 E-value=23 Score=40.24 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=54.0
Q ss_pred ccccEEEEEEEEeecCCCC--C--CCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCC-CeEEEEEEeCC
Q 045512 37 EQMHYLFVNVVKARNLPVM--D--VSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQS-NLVEVTVKDKD 111 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~--d--~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~-~~L~v~V~d~d 111 (782)
+-.|....+++.|.+++.- + ..-..++++.+.++.+.++|+.-..+.+|+|||. .+...+.++ ..|
T Consensus 277 d~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l-------- 347 (975)
T KOG2419|consen 277 DFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYL-------- 347 (975)
T ss_pred hhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHH--------
Confidence 3345556677777777432 1 1234589999999999999999999999999998 665554332 122
Q ss_pred CCCCceeEEEEEEccc
Q 045512 112 IGKDDFVGRVTFDLFE 127 (782)
Q Consensus 112 ~~~d~~lG~~~i~l~~ 127 (782)
...++|.|..++.+
T Consensus 348 --~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 348 --GNKIVGYCELDLND 361 (975)
T ss_pred --hhhccccccccccc
Confidence 34556666666655
No 342
>PHA02844 putative transmembrane protein; Provisional
Probab=22.94 E-value=2.1e+02 Score=23.08 Aligned_cols=17 Identities=18% Similarity=0.222 Sum_probs=10.8
Q ss_pred HHHhhHHHHHhhhhccc
Q 045512 702 GDLASQCERVQAILCWR 718 (782)
Q Consensus 702 ~~~a~~~e~~~~l~~w~ 718 (782)
+|..+++|-++.+++=.
T Consensus 18 dDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 18 EDFNNFIDVVKSVLSDD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 56666677777776543
No 343
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=21.48 E-value=6e+02 Score=22.83 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=51.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeee-ecccccCCCCCCcc-cceeEEEec--CCCCCeEEEEEEEccC-CCC
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVR-VTRPSHVRSVNPVW-NEEHMFVAS--EPFEDLIIVTVEDRIG-PGK 278 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~-kT~~~~~~t~nP~w-ne~f~f~v~--~~~~~~L~i~V~d~d~-~~~ 278 (782)
|.+.=+.-.++|..+..+.+.||+++.-+++.. .+..... . .... ...+.+.+. -+-..-+.|.+++... ...
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYE-D-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCC-C-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecccee-c-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 444444456677666667799999999988765 3333221 1 1111 122333332 1224568899998763 456
Q ss_pred CceeEEEEEeCCCcc
Q 045512 279 DEILGREFIPVRNVP 293 (782)
Q Consensus 279 d~~lG~~~i~l~~l~ 293 (782)
++.+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 778888888876665
No 344
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.40 E-value=3.7e+02 Score=25.23 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=43.0
Q ss_pred CCCcEEEEEE--CCEEEeecc-----------ccCCCCC-ccccEEEEEEeC--CC--ceEEEEEEeCCCCCCCCCCcCC
Q 045512 389 LTDAYCVAKY--GNKWIRTRT-----------ILDTLDP-RWNEQYTWEVYD--PC--TVITIGVFDNCHVNGSKDDAID 450 (782)
Q Consensus 389 ~~dpyv~v~~--~~~~~~T~~-----------~~~t~nP-~wne~~~f~v~~--~~--~~l~i~V~d~~~~~~~~~~~~d 450 (782)
++|.||+.+. |+.|.-|.- .++-.|| +||-.++..... |. ..|.+.||-.|.+| +|
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G------~d 98 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG------KD 98 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC------cc
Confidence 3488888865 555532221 1122233 455545444443 32 27999999999887 89
Q ss_pred CccEEEEEecccc
Q 045512 451 QRIGKVRIRLSTL 463 (782)
Q Consensus 451 ~~lG~~~i~l~~l 463 (782)
...|...|++..-
T Consensus 99 ~v~GYg~~hiP~~ 111 (187)
T KOG4027|consen 99 CVTGYGMLHIPTE 111 (187)
T ss_pred eeeeeeeEecCcC
Confidence 9999999887643
No 345
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=20.61 E-value=4.2e+02 Score=26.89 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHhhcccc
Q 045512 601 LLHVLFLILVFYPELILPTIFLYLFLIGMWNYRF 634 (782)
Q Consensus 601 ~~~~~~~~~~~~~~l~~p~~~l~l~~~~~~~~~~ 634 (782)
+++++=+++|-|-.++.|++.+-+++.++..|+-
T Consensus 170 lAv~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~~ 203 (263)
T PF14963_consen 170 LAVFVRLFVCKYLSIFAPFLTLQLAYMGLSKYFP 203 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 5555556667766667888888777777777764
Done!