Your job contains 1 sequence.
>045516
VDAAPVVATPTKSAKKGGKREAEDAIEKLVSAKKQKGNDGVAQAVKKAKVEAKTQKKNKN
DETSSSSSEEDSSDSEEEQKVKAVVTNKGGKAAKPPVKESSSEEEDSSSDEEPPKKQPVA
AKNGAVAATAKKSKPDSSSSDSSDDDSDEDEVPTSIKKLPVAAAKNGPSAPQKKKDDSSD
SSDEESDESSDEDDKSTKAIPQPKKLPASTAKKGTVAATKKSTGSSDDDSSSSEDSSESE
EDNGAPAKVTSEAKKLPAVKNVPAPAAKKKTESSDSSDEESEDSSDEDEEPTHVTKATPV
KKLSAVVTKNKVESSSSSDESESEEEKPPAKMDVDSSSEEESSDEEPQKKKDVKPNTKAL
KKESSSDEEDSDDEDEGEEEEASKTPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLF
VGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQM
LGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLE
EHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAKQ
RGDFGSGGGRSGGRGGRSGGRDFGRSGGRDGGRFGGRGRGGRDGGRGGRGRGRGTPNRPS
LAAAGTGKKTTFGDD
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045516
(675 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 586 7.6e-70 4
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 565 4.3e-66 4
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 239 1.3e-17 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 237 3.9e-17 2
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 223 2.4e-15 2
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 223 2.4e-15 2
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 223 2.4e-15 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 215 8.3e-15 2
TAIR|locus:2160437 - symbol:AT5G41690 species:3702 "Arabi... 210 3.9e-14 1
POMBASE|SPBC4F6.14 - symbol:SPBC4F6.14 "RNA-binding prote... 211 4.1e-14 1
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 205 9.2e-14 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 204 1.0e-13 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 203 1.3e-13 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 198 1.8e-13 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 201 2.1e-13 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 199 3.0e-13 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 199 3.0e-13 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 199 3.5e-13 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 199 5.8e-13 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 199 5.9e-13 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 199 5.9e-13 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 199 5.9e-13 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 199 6.0e-13 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 199 6.0e-13 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 199 6.0e-13 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 199 6.0e-13 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 185 1.4e-12 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 195 1.6e-12 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 187 1.7e-12 1
ASPGD|ASPL0000038712 - symbol:AN3427 species:162425 "Emer... 191 1.7e-12 1
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 201 2.0e-12 2
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 189 5.1e-12 1
UNIPROTKB|Q1JPH6 - symbol:EIF4H "Eukaryotic translation i... 168 5.9e-12 1
UNIPROTKB|I3L594 - symbol:EIF4H "Uncharacterized protein"... 168 5.9e-12 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 188 1.1e-11 1
TAIR|locus:2028205 - symbol:AT1G45100 species:3702 "Arabi... 187 1.2e-11 1
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 124 1.4e-11 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 186 1.8e-11 2
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 181 1.8e-11 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 149 1.9e-11 3
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 183 2.1e-11 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 186 2.3e-11 1
TAIR|locus:4010713942 - symbol:AT5G03495 species:3702 "Ar... 165 2.5e-11 1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 184 2.6e-11 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 183 4.3e-11 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 183 5.1e-11 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 183 5.1e-11 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 174 6.4e-11 2
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 177 8.1e-11 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 181 8.5e-11 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 180 9.9e-11 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 180 1.0e-10 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 180 1.1e-10 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 180 1.1e-10 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 180 1.1e-10 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 180 1.1e-10 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 180 1.1e-10 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 180 1.1e-10 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 180 1.1e-10 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 149 1.2e-10 3
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 178 1.7e-10 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 179 1.9e-10 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 175 1.9e-10 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 110 1.9e-10 2
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 154 2.0e-10 1
UNIPROTKB|F1NYA2 - symbol:LOC100859865 "Uncharacterized p... 154 2.0e-10 1
UNIPROTKB|Q15056 - symbol:EIF4H "Eukaryotic translation i... 166 2.1e-10 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 149 2.5e-10 3
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 174 2.5e-10 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 176 2.7e-10 1
UNIPROTKB|I3LRD5 - symbol:EIF4H "Uncharacterized protein"... 165 3.0e-10 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 176 3.1e-10 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 176 3.3e-10 1
UNIPROTKB|E2RQG8 - symbol:EIF4H "Uncharacterized protein"... 165 3.4e-10 1
UNIPROTKB|A7MBG9 - symbol:WBSCR1 "WBSCR1 protein" species... 159 3.4e-10 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 164 3.5e-10 3
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 175 3.9e-10 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 108 4.1e-10 2
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 108 4.1e-10 2
TAIR|locus:2142634 - symbol:AT5G03480 species:3702 "Arabi... 169 4.2e-10 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 171 4.3e-10 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 164 4.4e-10 3
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 175 4.6e-10 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 174 4.9e-10 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 174 5.2e-10 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 174 5.2e-10 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 174 5.3e-10 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 173 5.7e-10 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 160 6.6e-10 3
UNIPROTKB|F6XHX3 - symbol:RBM23 "Uncharacterized protein"... 170 6.9e-10 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 172 8.0e-10 1
UNIPROTKB|J9P448 - symbol:RBM23 "Uncharacterized protein"... 170 8.1e-10 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 172 8.5e-10 1
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 166 8.5e-10 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 171 8.8e-10 1
DICTYBASE|DDB_G0286395 - symbol:u2af2 "U2 snRNP auxiliary... 172 9.4e-10 1
TAIR|locus:2099488 - symbol:AT3G48840 species:3702 "Arabi... 147 1.2e-09 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 170 1.4e-09 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 167 1.4e-09 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 170 1.4e-09 1
WARNING: Descriptions of 710 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 586 (211.3 bits), Expect = 7.6e-70, Sum P(4) = 7.6e-70
Identities = 129/261 (49%), Positives = 170/261 (65%)
Query: 348 QKKKDVKPNTKALKKXXXXXXXXXXXXXXXXXXXXXKTPKKNVTDVKMVDAE-SGKKAAQ 406
+K K +TKA KK +TPKK +DV+MVDAE S K +
Sbjct: 230 EKPAQKKADTKASKKSSSDESSESEEDESEDEE---ETPKKKSSDVEMVDAEKSSAKQPK 286
Query: 407 TPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFA 465
TP TP +GGSKTLF NL F++E+ADV+NFF E EVVDVR S++ D G F+G+GHVEFA
Sbjct: 287 TPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFA 346
Query: 466 SVEDAHKAIELNGQMLGNRAIRLDFARERG------AYTPYSGGNESNSFQKGGRGQAAH 519
S E+A KA+E +G+ L R IRLD A+ERG A+TP SG +F+ GG G
Sbjct: 347 SSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSG-----NFRSGGDGGDEK 401
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
IF+KGFD+S+ ED ++ +L EHF SCGEI +SVP D DTG+ KGIAYL+F++ K
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE--K 459
Query: 580 ALEMSGTEIGG-YSLVVDEAK 599
ALE++G+++GG + LVVDE +
Sbjct: 460 ALELNGSDMGGGFYLVVDEPR 480
Score = 95 (38.5 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
RA +E F GE+ + + D GS +G +++F ++ KALE G + G + +
Sbjct: 310 RADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRL 369
Query: 596 DEAKQ 600
D A++
Sbjct: 370 DIAQE 374
Score = 70 (29.7 bits), Expect = 7.6e-70, Sum P(4) = 7.6e-70
Identities = 21/36 (58%), Positives = 22/36 (61%)
Query: 3 AAPVVAT--PTKSAKKGGKREAEDAIEKLVSAKKQK 36
A VVA TK KKG KRE ED I+ VS KKQK
Sbjct: 7 ATKVVAEIKATKPLKKG-KREPEDDIDTKVSLKKQK 41
Score = 49 (22.3 bits), Expect = 7.6e-70, Sum P(4) = 7.6e-70
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 658 RPSLAAAGTGKKTTFGDD 675
RPS G KKTTFGD+
Sbjct: 542 RPSFTPQG--KKTTFGDE 557
Score = 42 (19.8 bits), Expect = 7.6e-70, Sum P(4) = 7.6e-70
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 155 SIKKLPVAAAKNG 167
++ K P AAAKNG
Sbjct: 136 AVTKKPAAAAKNG 148
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 565 (203.9 bits), Expect = 4.3e-66, Sum P(4) = 4.3e-66
Identities = 112/217 (51%), Positives = 153/217 (70%)
Query: 385 TPKKNVTDVKMVDAE--SGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAE 442
TPKK +DV+MVDAE S K +TP GGSKTLF GNL + + ++D++NFF E E
Sbjct: 350 TPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGE 409
Query: 443 VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSG 502
VVDVRLSS DG FKGYGH+EFAS E+A KA+E+NG++L R +RLD A ERG TP
Sbjct: 410 VVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERG--TP--- 464
Query: 503 GNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
SN +KG G + TI+++GF SS+GED+++ L HF CGE+TR+ VP D +TG+
Sbjct: 465 -RNSNPGRKG-EGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGA 522
Query: 563 VKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAK 599
+G AY+D T F++AL++SG+EIGG ++ V+E++
Sbjct: 523 SRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEESR 557
Score = 106 (42.4 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 58/313 (18%), Positives = 106/313 (33%)
Query: 296 KATPVKKLSAVVTKNKVXXXXXXXXXXXXXXKPPAKMD--VXXXXXXXXXXXXPQKKKDV 353
+ PVKK AV+ K K+ P K V D
Sbjct: 162 ETVPVKKQPAVLEKAKIESSSSDDDSSSDEETVPMKKQTAVLEKAKAESSSSDDGSSSDE 221
Query: 354 KPNTKALKKXXXXXXXXXXXXXXXXXXXXXKTPKKNVTDVKMVDAESGKKAAQTPFTPQS 413
+P + K P V D K ++ S ++ + + P
Sbjct: 222 EPTPAKKEPIVVKKDSSDESSSDEETPVVKKKPTTVVKDAK-AESSSSEEESSSDDEPTP 280
Query: 414 GGSKTLFVGNLPF------SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASV 467
T+ P S E +D + E ++SS + S
Sbjct: 281 AKKPTVVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESD 340
Query: 468 EDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
++ K ++ + + +D ++ A P + N++ +GG + T+F
Sbjct: 341 KEESKDEKVTPKKKDSDVEMVDAEQKSNAKQPKTPTNQT----QGG----SKTLFAGNLS 392
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTE 587
+ R+ +E F GE+ + + +D GS KG +++F + KALEM+G
Sbjct: 393 YQIA----RSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALEMNGKL 447
Query: 588 IGGYSLVVDEAKQ 600
+ G + +D A +
Sbjct: 448 LLGRDVRLDLANE 460
Score = 56 (24.8 bits), Expect = 4.3e-66, Sum P(4) = 4.3e-66
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 8 ATPTKSAKKGGKREAEDAIEKLVSAKKQK 36
A+ TK KKG KR+AE+ ++ V+ KKQK
Sbjct: 16 ASMTKPLKKG-KRDAEEDLDMQVT-KKQK 42
Score = 49 (22.3 bits), Expect = 4.3e-66, Sum P(4) = 4.3e-66
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 656 PNRPSLAAAGTGKKTTFGDD 675
P++PS+ + G KT F D+
Sbjct: 616 PSKPSVMESSKGTKTVFNDE 635
Score = 41 (19.5 bits), Expect = 4.3e-66, Sum P(4) = 4.3e-66
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 296 KATPVKKLSAVVTKNKVXXXXXXXXXXXXXXKPPAK 331
+ PVKK AV+ K KV P K
Sbjct: 132 ETAPVKKQPAVLEKAKVESSSSDDDSSSDEETVPVK 167
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 239 (89.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 63/200 (31%), Positives = 98/200 (49%)
Query: 394 KMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD 453
K A + A T + S + T+FVG L ++V+ + F E +V R+ D
Sbjct: 240 KAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQ 299
Query: 454 -GRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLDFARERGAYT-PYSGGNESNSFQ 510
GR KGYG+V+F + E A A+ NG + + R + LD + R A PY+ N
Sbjct: 300 SGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGD 359
Query: 511 KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
+ + + T+F+ + ED + + FG CG+I I +P D +G +KG Y+
Sbjct: 360 Q--LSEPSDTVFVGNLSFNATEDDLSTA----FGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
Query: 571 FTDADSFNKALEMSGTEIGG 590
F+D DS K +EM+G I G
Sbjct: 414 FSDIDSAKKCVEMNGHFIAG 433
Score = 178 (67.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 46/136 (33%), Positives = 69/136 (50%)
Query: 392 DVKMV--DAESGKKAAQTPFTPQSGG---------SKTLFVGNLPFSVEQADVQNFFSEV 440
D +MV D + + A P+ Q G S T+FVGNL F+ + D+ F
Sbjct: 330 DGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGC 389
Query: 441 AEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTP 499
++ +RL +D GR KG+G+V F+ ++ A K +E+NG + R RLDF+ TP
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFS------TP 443
Query: 500 YSGGNESNSFQKGGRG 515
+GG +GGRG
Sbjct: 444 RTGGGS-----RGGRG 454
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 237 (88.5 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 68/212 (32%), Positives = 100/212 (47%)
Query: 392 DVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
D K AE AA + G S LFVGNL ++V + + F + E+ R+ ++
Sbjct: 252 DSKKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTE 310
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNE--SN 507
D GR +G+G+VEF + DA KA E + + R I LD+A R A G E N
Sbjct: 311 RDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQN 370
Query: 508 SFQKGG--RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKG 565
+ G + T+F+ S ED S+ E FG G + I +P D ++G KG
Sbjct: 371 RARSFGDQTSPESDTLFVGNLPFSANED----SVHEVFGPQGNVLGIRLPTDMESGRPKG 426
Query: 566 IAYLDFTDADSFNKAL-EMSGTEIGGYSLVVD 596
Y+ ++ D KA E+ G EI G + +D
Sbjct: 427 FGYVQYSSVDEARKAYNELQGAEIDGRPIRLD 458
Score = 193 (73.0 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 45/102 (44%), Positives = 60/102 (58%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI 474
S TLFVGNLPFS + V F V+ +RL +D + GR KG+G+V+++SV++A KA
Sbjct: 383 SDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAY 442
Query: 475 -ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
EL G + R IRLDF+ R A GG +GGRG
Sbjct: 443 NELQGAEIDGRPIRLDFSTPR-ANNGGGGGGRGGFGGRGGRG 483
Score = 37 (18.1 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 11 TKSAKKGGKREAEDAIEKLVSAKKQKG 37
TKS K G A +K +S K G
Sbjct: 4 TKSVVKKGAESAGKLADKALSKVKDAG 30
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 223 (83.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 70/210 (33%), Positives = 105/210 (50%)
Query: 395 MVDAESGKKAAQTPFTPQSGG---SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
MV +G+K+ Q + + GG SKTL V NL ++ + +Q F + + ++ +
Sbjct: 436 MVIDYTGEKSQQE--SQKGGGERESKTLIVNNLSYAASEETLQELFKKATSI---KMPQN 490
Query: 452 ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ 510
GR KGY VEF + EDA +A+ N + RAIRL+F+ + GN N+
Sbjct: 491 NQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPS-----WQKGN-MNA-- 542
Query: 511 KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
+GG Q + T+F++G E+ +R S E GS RI D DTGS KG ++D
Sbjct: 543 RGGFNQQSKTLFVRGLSEDTTEETLRESFE---GSIS--ARIVT--DRDTGSSKGFGFVD 595
Query: 571 FTDADSFNKALE-MSGTEIGGYSLVVDEAK 599
F+ + A E M EI G + +D AK
Sbjct: 596 FSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 625
Score = 176 (67.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 55/200 (27%), Positives = 95/200 (47%)
Query: 396 VDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR 455
+ E K + ++TLFV NLP+ V + +++N F EV RL + +G
Sbjct: 348 IKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGS 404
Query: 456 FKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
KG ++EF + +A KA+E G + RA+ +D Y+G QKGG
Sbjct: 405 SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID----------YTGEKSQQESQKGGG 454
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
+ + T+ + + E+ +L+E F T I +P++ + G KG A+++F A
Sbjct: 455 ERESKTLIVNNLSYAASEE----TLQELFKKA---TSIKMPQN-NQGRPKGYAFVEFPTA 506
Query: 575 DSFNKALEM-SGTEIGGYSL 593
+ +AL + TEI G ++
Sbjct: 507 EDAKEALNSCNNTEIEGRAI 526
Score = 41 (19.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 10 PTKSAKKGGKREAEDAIEKLVSAKKQK 36
P K A GKR+ E A + AKK+K
Sbjct: 245 PVKEAP--GKRKKEMANKSAPEAKKKK 269
Score = 40 (19.1 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 9 TPTKSAKKGGKREAEDAIEKLVSAKK 34
TP K A K+ A A + + AKK
Sbjct: 52 TPAKKAATPAKKAATPAKKAVTPAKK 77
Score = 38 (18.4 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 4 APVVA-TPTKSAKKGGKREAED 24
APV TP K+ K E+ED
Sbjct: 195 APVKKPTPAKATPAKAKAESED 216
Score = 37 (18.1 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 4 APVVATPTKSAKKGGKREAEDAIEKLVSAKKQK 36
A ATP K A K+ +K V+ +K
Sbjct: 61 AKKAATPAKKAVTPAKKAVATPAKKAVAPSPKK 93
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 223 (83.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 70/210 (33%), Positives = 105/210 (50%)
Query: 395 MVDAESGKKAAQTPFTPQSGG---SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
MV +G+K+ Q + + GG SKTL V NL ++ + +Q F + + ++ +
Sbjct: 438 MVIDYTGEKSQQE--SQKGGGERESKTLIVNNLSYAASEETLQELFKKATSI---KMPQN 492
Query: 452 ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ 510
GR KGY VEF + EDA +A+ N + RAIRL+F+ + GN N+
Sbjct: 493 NQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPS-----WQKGN-MNA-- 544
Query: 511 KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
+GG Q + T+F++G E+ +R S E GS RI D DTGS KG ++D
Sbjct: 545 RGGFNQQSKTLFVRGLSEDTTEETLRESFE---GSIS--ARIVT--DRDTGSSKGFGFVD 597
Query: 571 FTDADSFNKALE-MSGTEIGGYSLVVDEAK 599
F+ + A E M EI G + +D AK
Sbjct: 598 FSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
Score = 176 (67.0 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 55/200 (27%), Positives = 95/200 (47%)
Query: 396 VDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR 455
+ E K + ++TLFV NLP+ V + +++N F EV RL + +G
Sbjct: 350 IKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGS 406
Query: 456 FKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
KG ++EF + +A KA+E G + RA+ +D Y+G QKGG
Sbjct: 407 SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID----------YTGEKSQQESQKGGG 456
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
+ + T+ + + E+ +L+E F T I +P++ + G KG A+++F A
Sbjct: 457 ERESKTLIVNNLSYAASEE----TLQELFKKA---TSIKMPQN-NQGRPKGYAFVEFPTA 508
Query: 575 DSFNKALEM-SGTEIGGYSL 593
+ +AL + TEI G ++
Sbjct: 509 EDAKEALNSCNNTEIEGRAI 528
Score = 122 (48.0 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 43/157 (27%), Positives = 75/157 (47%)
Query: 384 KTPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEV 443
+ P K ++ A KK +T TP S S LFV NL + + +++ E
Sbjct: 252 EAPGKRKKEMANKSAPEAKKK-KTE-TPASAFS--LFVKNLTPTKDYEELRTAIKEFFGK 307
Query: 444 VDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGG 503
++++S G K +G+V+F S ED KA++LNG+ L I+L+ A+ +
Sbjct: 308 KNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSK--------- 358
Query: 504 NESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLE 540
S ++ + + A T+F+K V ED+++ E
Sbjct: 359 ---ESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE 392
Score = 41 (19.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 10 PTKSAKKGGKREAEDAIEKLVSAKKQK 36
P K A GKR+ E A + AKK+K
Sbjct: 249 PVKEAP--GKRKKEMANKSAPEAKKKK 273
Score = 40 (19.1 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 9 TPTKSAKKGGKREAEDAIEKLVSAKK 34
TP K A K+ A A + + AKK
Sbjct: 56 TPAKKAATPAKKAATPAKKAVTPAKK 81
Score = 38 (18.4 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 4 APVVA-TPTKSAKKGGKREAED 24
APV TP K+ K E+ED
Sbjct: 199 APVKKPTPAKATPAKAKAESED 220
Score = 37 (18.1 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 4 APVVATPTKSAKKGGKREAEDAIEKLVSAKKQK 36
A ATP K A K+ +K V+ +K
Sbjct: 65 AKKAATPAKKAVTPAKKAVATPAKKAVAPSPKK 97
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 223 (83.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 70/210 (33%), Positives = 105/210 (50%)
Query: 395 MVDAESGKKAAQTPFTPQSGG---SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
MV +G+K+ Q + + GG SKTL V NL ++ + +Q F + + ++ +
Sbjct: 438 MVIDYTGEKSQQE--SQKGGGERESKTLIVNNLSYAASEETLQELFKKATSI---KMPQN 492
Query: 452 ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ 510
GR KGY VEF + EDA +A+ N + RAIRL+F+ + GN N+
Sbjct: 493 NQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPS-----WQKGN-MNA-- 544
Query: 511 KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
+GG Q + T+F++G E+ +R S E GS RI D DTGS KG ++D
Sbjct: 545 RGGFNQQSKTLFVRGLSEDTTEETLRESFE---GSIS--ARIVT--DRDTGSSKGFGFVD 597
Query: 571 FTDADSFNKALE-MSGTEIGGYSLVVDEAK 599
F+ + A E M EI G + +D AK
Sbjct: 598 FSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
Score = 176 (67.0 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 55/200 (27%), Positives = 95/200 (47%)
Query: 396 VDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR 455
+ E K + ++TLFV NLP+ V + +++N F EV RL + +G
Sbjct: 350 IKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGS 406
Query: 456 FKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
KG ++EF + +A KA+E G + RA+ +D Y+G QKGG
Sbjct: 407 SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID----------YTGEKSQQESQKGGG 456
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
+ + T+ + + E+ +L+E F T I +P++ + G KG A+++F A
Sbjct: 457 ERESKTLIVNNLSYAASEE----TLQELFKKA---TSIKMPQN-NQGRPKGYAFVEFPTA 508
Query: 575 DSFNKALEM-SGTEIGGYSL 593
+ +AL + TEI G ++
Sbjct: 509 EDAKEALNSCNNTEIEGRAI 528
Score = 122 (48.0 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 43/157 (27%), Positives = 75/157 (47%)
Query: 384 KTPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEV 443
+ P K ++ A KK +T TP S S LFV NL + + +++ E
Sbjct: 252 EAPGKRKKEMANKSAPEAKKK-KTE-TPASAFS--LFVKNLTPTKDYEELRTAIKEFFGK 307
Query: 444 VDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGG 503
++++S G K +G+V+F S ED KA++LNG+ L I+L+ A+ +
Sbjct: 308 KNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSK--------- 358
Query: 504 NESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLE 540
S ++ + + A T+F+K V ED+++ E
Sbjct: 359 ---ESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE 392
Score = 41 (19.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 10 PTKSAKKGGKREAEDAIEKLVSAKKQK 36
P K A GKR+ E A + AKK+K
Sbjct: 249 PVKEAP--GKRKKEMANKSAPEAKKKK 273
Score = 40 (19.1 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 9 TPTKSAKKGGKREAEDAIEKLVSAKK 34
TP K A K+ A A + + AKK
Sbjct: 56 TPAKKAATPAKKAATPAKKAVTPAKK 81
Score = 38 (18.4 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 4 APVVA-TPTKSAKKGGKREAED 24
APV TP K+ K E+ED
Sbjct: 199 APVKKPTPAKATPAKAKAESED 220
Score = 37 (18.1 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 4 APVVATPTKSAKKGGKREAEDAIEKLVSAKKQK 36
A ATP K A K+ +K V+ +K
Sbjct: 65 AKKAATPAKKAVTPAKKAVATPAKKAVAPSPKK 97
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 215 (80.7 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 52/107 (48%), Positives = 65/107 (60%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI 474
S TLFVGNLPF ++ V FFSEVAEV +RL ++ + GR KG+G+V F SVEDA A
Sbjct: 341 SDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAF 400
Query: 475 E-LNGQMLGNRAIRLDFA-----RERGAYTPYSGGNESNSFQKGGRG 515
E LNGQ + R RLD++ RE G + GG + GGRG
Sbjct: 401 EQLNGQSINGRNCRLDYSTPRPPREDGGFGGRGGGRGGFGGRGGGRG 447
Score = 215 (80.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 61/215 (28%), Positives = 102/215 (47%)
Query: 386 PKKNVTDVKMVDAESGKKA-AQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVV 444
P K K AE ++A A+ T +S TLFVGNL ++V+ A + F V
Sbjct: 207 PAKTEAPSKKRKAEEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVT 266
Query: 445 DVRLSSDAD-GRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSG 502
R+ +D + GR KG+G+V+FA+ E+A KA E G + R I++DF+ + + +
Sbjct: 267 SARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAA 326
Query: 503 GNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
G + + ++ T+F+ ED V A F E+ + +P + ++G
Sbjct: 327 GARAKKYGDTVSPES-DTLFVGNLPFDADEDSVGA----FFSEVAEVKSLRLPTEQESGR 381
Query: 563 VKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596
KG Y+ F + A E ++G I G + +D
Sbjct: 382 RKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLD 416
Score = 39 (18.8 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 10 PTKSAKKGGKREAEDAIEKLVSAKKQK 36
P K+ KR+AE+ E+ AKK K
Sbjct: 207 PAKTEAPSKKRKAEE--EEEAPAKKTK 231
Score = 37 (18.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 5 PVVATPTKSAKKGGKREAEDA 25
P A AKK K E+ D+
Sbjct: 83 PTKAATNGKAKKAAKAESSDS 103
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 210 (79.0 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 63/195 (32%), Positives = 100/195 (51%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIEL 476
KTLFV NLP+ + ++ +FF +V EVV V+L + G+ G G VEFASV +A +A++
Sbjct: 68 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQK 127
Query: 477 -NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFI-KGFDSSVGE-- 532
NG+ L N I LD A ++ Y P + + K R +H I + +SV E
Sbjct: 128 KNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVL 187
Query: 533 ------DQVRAS-LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS 584
Q + S + + F GE+ I + +++ G G +++F AD KALE +
Sbjct: 188 FVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENKN 246
Query: 585 GTEIGGYSLVVDEAK 599
G + + + +D AK
Sbjct: 247 GEYLHDHKIFIDVAK 261
Score = 157 (60.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 38/102 (37%), Positives = 58/102 (56%)
Query: 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDA 470
P + + LFV NL + +D+ +FF+ V EVV +RL + +G+ GYG VEFAS ++
Sbjct: 179 PPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADET 238
Query: 471 HKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQK 511
KA+E NG+ L + I +D A+ PY G + N +K
Sbjct: 239 KKALENKNGEYLHDHKIFIDVAKT----APYPPGPKYNLVEK 276
Score = 146 (56.5 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE- 475
KTLFV NL + + + FF +VAEVV VRL + G G G VEFASV +A KA++
Sbjct: 436 KTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQK 495
Query: 476 LNGQMLGNRAIRLD 489
+NG+ L +R I LD
Sbjct: 496 MNGENLRSREIFLD 509
Score = 127 (49.8 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIEL 476
KTLFV +L E + NFF +V EVV VRL + G+ G VEF S +A A+E
Sbjct: 308 KTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFVEFGSANEAKMALET 367
Query: 477 -NGQMLGNRAIRLDFAR 492
NG+ L + I L+ A+
Sbjct: 368 KNGEYLNDCKIFLEVAK 384
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 211 (79.3 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 61/186 (32%), Positives = 95/186 (51%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVD-VRLSSDADGRFKGYGHVEFASVEDAHKAI 474
+ TLFV NL F +Q D+ NFFS+V + V +++ G +GYG V F+ +EDA +A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 475 -ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
EL + L R +RLDFA R + N++ +K R + I+ S+ +
Sbjct: 64 KELKNKKLHGRILRLDFATPRKRSEVDTDQNKA--VKKTIRQDNRPRLIIRNLPWSIKKP 121
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
Q LE HF G++ I +P G + G A++ D + +A+ ++GTEI G
Sbjct: 122 Q---HLEPHFSKFGKVREIKIPTK-GGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRP 177
Query: 593 LVVDEA 598
+ VD A
Sbjct: 178 IAVDWA 183
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 205 (77.2 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 57/184 (30%), Positives = 94/184 (51%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF ++
Sbjct: 174 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 233
Query: 469 DAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ +LG I E+ + N+ QKG G +++
Sbjct: 234 SVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGSGGPVR--LYVGSLH 286
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R LE G+I I + KD +TG KG ++ F+D++ +ALE ++G
Sbjct: 287 CNITEDMLRGILEPF----GKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLNGF 342
Query: 587 EIGG 590
E+ G
Sbjct: 343 ELAG 346
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 33/105 (31%), Positives = 55/105 (52%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + SGG L+VG+L ++ + ++ ++ ++ L D
Sbjct: 253 VQASQAEKNRLAAMANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKD 312
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494
++ GR KGYG + F+ E A +A+E LNG L R +R+ ER
Sbjct: 313 SETGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRIGHVTER 357
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 204 (76.9 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 57/184 (30%), Positives = 93/184 (50%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF ++
Sbjct: 160 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 219
Query: 469 DAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ +LG I E+ + N+ QKG G +++
Sbjct: 220 SVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGSSGPMR--LYVGSLH 272
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R E G+I I + KD DTG KG ++ F+D++ +ALE ++G
Sbjct: 273 FNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 328
Query: 587 EIGG 590
E+ G
Sbjct: 329 ELAG 332
Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 41/131 (31%), Positives = 64/131 (48%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F ++ ++ L D
Sbjct: 239 VQASQAEKNRLAAMANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 298
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER---GAYTPYSGGNES 506
+D GR KGYG + F+ E A +A+E LNG L R +R+ ER G + G +
Sbjct: 299 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGEQE 358
Query: 507 NSF-QKGGRGQ 516
GGR Q
Sbjct: 359 LDLGSAGGRLQ 369
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 203 (76.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 57/184 (30%), Positives = 93/184 (50%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF ++
Sbjct: 159 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 218
Query: 469 DAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ +LG I E+ + N+ QKG G +++
Sbjct: 219 SVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGNGGPMR--LYVGSLH 271
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R E G+I I + KD DTG KG ++ F+D++ +ALE ++G
Sbjct: 272 FNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 327
Query: 587 EIGG 590
E+ G
Sbjct: 328 ELAG 331
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/131 (31%), Positives = 66/131 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + +GG L+VG+L F++ + ++ F ++ ++ L D
Sbjct: 238 VQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 297
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER---GAYTPYSGGNES 506
+D GR KGYG + F+ E A +A+E LNG L R +R+ ER G + G++
Sbjct: 298 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE 357
Query: 507 NSF-QKGGRGQ 516
GGR Q
Sbjct: 358 LDLGSAGGRFQ 368
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 198 (74.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 55/209 (26%), Positives = 102/209 (48%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFK 457
E ++ QT T SG L+VGNLP+++ +++ F E VVDV++ D R +
Sbjct: 100 EEVEEEKQT--TQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSR 157
Query: 458 GYGHVEFASVEDAHKAIEL-NGQMLGNRAIRLDFARERGAYTPYSGGNE--SNSFQKGGR 514
G+G V S+E+A +A+++ N +G R ++++F P G NE + R
Sbjct: 158 GFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPE-----VPRGGENEVMRTKIRDNNR 212
Query: 515 G--QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572
+ H ++ ++G + L++ FG + V + +TG +G ++ F
Sbjct: 213 SYVDSPHKVYA----GNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFE 268
Query: 573 DADSFNKALE-MSGTEIGGYSLVVDEAKQ 600
A++ AL M+G E+ G +L ++ A +
Sbjct: 269 SAENVQSALATMNGVEVEGRALRLNLASE 297
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 201 (75.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 57/184 (30%), Positives = 93/184 (50%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF ++
Sbjct: 150 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 209
Query: 469 DAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ +LG I E+ + N+ QKG G +++
Sbjct: 210 SVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGTGGPMR--LYVGSLH 262
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R E G+I I + KD DTG KG ++ F+D++ +ALE ++G
Sbjct: 263 FNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 318
Query: 587 EIGG 590
E+ G
Sbjct: 319 ELAG 322
Score = 141 (54.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/131 (32%), Positives = 67/131 (51%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + +GG L+VG+L F++ + ++ F ++ ++ L D
Sbjct: 229 VQASQAEKNRLAAMANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 288
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER--GA--YTPYSGGNE 505
+D GR KGYG + F+ E A +A+E LNG L R +R+ ER G+ T G E
Sbjct: 289 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRIGHVTERLDGSTDITFPDGDQE 348
Query: 506 SNSFQKGGRGQ 516
+ GGR Q
Sbjct: 349 LDLGSAGGRLQ 359
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 199 (75.1 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 59/209 (28%), Positives = 101/209 (48%)
Query: 387 KKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDV 446
K+ + K ++ KK+ T + TLFVG L ++++ A ++ F + V+
Sbjct: 141 KRKAEESKEEESAPVKKSKPAASTEEPA---TLFVGRLSWNIDDAWLKREFEHIGGVIGA 197
Query: 447 RLSSD-ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGN 504
R+ + A G+ +GYG+V+F S A KA+E + G+ + R I LD + + P++ +
Sbjct: 198 RVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK----PHASKS 253
Query: 505 ESNSFQKGGRGQA--AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
++ ++ G Q+ + T+FI + D +L FG G + VP DT
Sbjct: 254 NNDRAKQYGDSQSPPSDTLFIGNLSFNANRD----NLFNVFGEYGNVISCRVPTHPDTQQ 309
Query: 563 VKGIAYLDFTDADSFNKALE-MSGTEIGG 590
KG Y+ F+ D ALE M+G I G
Sbjct: 310 PKGFGYVQFSSVDEAKAALEAMNGEYIEG 338
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF-KGYGHVEFASVEDA 470
QS S TLF+GNL F+ + ++ N F E V+ R+ + D + KG+G+V+F+SV++A
Sbjct: 265 QSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEA 324
Query: 471 HKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
A+E +NG+ + R RLDF+ R + N +N+ ++GG G
Sbjct: 325 KAALEAMNGEYIEGRPCRLDFSTPRD-----NTNNNNNNNRRGGFG 365
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 199 (75.1 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 59/209 (28%), Positives = 101/209 (48%)
Query: 387 KKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDV 446
K+ + K ++ KK+ T + TLFVG L ++++ A ++ F + V+
Sbjct: 141 KRKAEESKEEESAPVKKSKPAASTEEPA---TLFVGRLSWNIDDAWLKREFEHIGGVIGA 197
Query: 447 RLSSD-ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGN 504
R+ + A G+ +GYG+V+F S A KA+E + G+ + R I LD + + P++ +
Sbjct: 198 RVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK----PHASKS 253
Query: 505 ESNSFQKGGRGQA--AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
++ ++ G Q+ + T+FI + D +L FG G + VP DT
Sbjct: 254 NNDRAKQYGDSQSPPSDTLFIGNLSFNANRD----NLFNVFGEYGNVISCRVPTHPDTQQ 309
Query: 563 VKGIAYLDFTDADSFNKALE-MSGTEIGG 590
KG Y+ F+ D ALE M+G I G
Sbjct: 310 PKGFGYVQFSSVDEAKAALEAMNGEYIEG 338
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF-KGYGHVEFASVEDA 470
QS S TLF+GNL F+ + ++ N F E V+ R+ + D + KG+G+V+F+SV++A
Sbjct: 265 QSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEA 324
Query: 471 HKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
A+E +NG+ + R RLDF+ R + N +N+ ++GG G
Sbjct: 325 KAALEAMNGEYIEGRPCRLDFSTPRD-----NTNNNNNNNRRGGFG 365
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 199 (75.1 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 199 (75.1 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 199 (75.1 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 199 (75.1 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 199 (75.1 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 199 (75.1 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 199 (75.1 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 199 (75.1 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 199 (75.1 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 56/188 (29%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + +N+ QKG G +++
Sbjct: 206 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHF 259
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G E
Sbjct: 260 NITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 316 LAGRPMKV 323
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 225 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Query: 510 QKGG 513
++ G
Sbjct: 345 ERTG 348
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 185 (70.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 53/166 (31%), Positives = 84/166 (50%)
Query: 428 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQ-MLGNRA 485
+ D+++FFS V +V DVR+ SD + R KG +VEF ++ AI L GQ +LG
Sbjct: 7 IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI 66
Query: 486 IRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGS 545
I E+ + N+ QKG G +++ ++ ED +R E
Sbjct: 67 IVQASQAEKNRLAAMA-----NNLQKGNGGPMR--LYVGSLHFNITEDMLRGIFEPF--- 116
Query: 546 CGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590
G+I I + KD DTG KG ++ F+D++ +ALE ++G E+ G
Sbjct: 117 -GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 161
Score = 141 (54.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 41/131 (31%), Positives = 66/131 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + +GG L+VG+L F++ + ++ F ++ ++ L D
Sbjct: 68 VQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 127
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER---GAYTPYSGGNES 506
+D GR KGYG + F+ E A +A+E LNG L R +R+ ER G + G++
Sbjct: 128 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE 187
Query: 507 NSF-QKGGRGQ 516
GGR Q
Sbjct: 188 LDLGSAGGRFQ 198
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 195 (73.7 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 58/189 (30%), Positives = 91/189 (48%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG ++EF
Sbjct: 142 TPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDST 201
Query: 469 DAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L+GQ +LG I E+ + N+ QKG G +++
Sbjct: 202 SVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALA-----NNLQKGSAGPMR--LYVGSLH 254
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R E G I I + D +TG KG ++ F+DA+ KALE ++G
Sbjct: 255 FNITEDMLRGIFEPF----GRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGF 310
Query: 587 EIGGYSLVV 595
E+ G + V
Sbjct: 311 ELAGRPMKV 319
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 187 (70.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 64/225 (28%), Positives = 99/225 (44%)
Query: 388 KNVTDVKMVDAESGKKAAQTPFTPQS-GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDV 446
+NV + E A P QS LFVGNLPF+V+ A + F V V
Sbjct: 61 RNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120
Query: 447 RLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA-----RERG-AYT 498
+ D GR +G+G V +SV + A + NG L R +R++ RE G +
Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRG 180
Query: 499 PYSGGNESNSFQKGGRGQAA---HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVP 555
P S S S GG G A + +++ S G D + +LE F G++ V
Sbjct: 181 PRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL--SWGVDDM--ALESLFSEQGKVVEARVI 236
Query: 556 KDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 599
D D+G KG ++ + + A++ + G ++ G + V EA+
Sbjct: 237 YDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281
Score = 132 (51.5 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAH 471
+G ++VGNL + V+ +++ FSE +VV+ R+ D D GR KG+G V + S ++
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 472 KAIE-LNGQMLGNRAIRLDFARER 494
AI+ L+G L R IR+ A R
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEAR 283
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 191 (72.3 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 58/224 (25%), Positives = 101/224 (45%)
Query: 384 KTPKK-NVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAE 442
K KK V D K D + T PQ +++GNL FSV + D++ F +
Sbjct: 37 KAKKKATVADAK-ADTHPKSENGGTETAPQKRSDYGIWIGNLAFSVTKEDIRRFLTTNCS 95
Query: 443 VVDVRLS-------SDADGRF--KGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493
D ++ SD R KG+ +V+F++ + +A+ L+ Q++ R + + A+
Sbjct: 96 FTDATITRVHLPKPSDKSSRAQNKGFAYVDFSTPKALEEALGLSEQLVSGRRVLIKDAKN 155
Query: 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRIS 553
S + +N+ GR + +F+ ++ D + LEEHF CG +T +
Sbjct: 156 YKGRPEKSQDDGNNAPTSSGRPPSKR-LFV----GNLSFDTTKEFLEEHFSQCGTVTNVH 210
Query: 554 VPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597
V D+G KG A+++F D LE + T GY + ++
Sbjct: 211 VATFQDSGKCKGYAWVEFED-------LEAAKTAERGYKYITED 247
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 201 (75.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 66/189 (34%), Positives = 96/189 (50%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
SK L V NL FS + +Q+ F + V +R+ + +GR KGY VEF +VED+ +A+E
Sbjct: 467 SKVLVVNNLAFSASEDSLQSVFEKA---VSIRIPQN-NGRPKGYAFVEFENVEDSKEALE 522
Query: 476 -LNGQMLGNRAIRLDFA---RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
N + R+IRL+++ RERG GG NS G T+F+KG +
Sbjct: 523 NCNNTDIEGRSIRLEYSQNDRERG------GGGRGNS------GPTK-TLFVKG----LS 565
Query: 532 EDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590
+D +L++ F G I + D DTGS KG ++DF + A E M EI G
Sbjct: 566 DDTTDQTLKDSFD--GAIAA-RIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDG 622
Query: 591 YSLVVDEAK 599
+ +D AK
Sbjct: 623 NKVTLDYAK 631
Score = 156 (60.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 54/162 (33%), Positives = 81/162 (50%)
Query: 385 TPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNL----PFSVEQADVQNFFS-E 439
TP K + K E G A+ T G S LF+GNL F ++ + FFS E
Sbjct: 263 TPAKRKAETKK---EKGTPPAKKAKTDGEGFS--LFLGNLNNNKDFDELKSAISKFFSKE 317
Query: 440 VAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTP 499
E+ DVRL G K +G+V+FAS E+ KA+ELNG+ L + ++LD AR +
Sbjct: 318 GLEIQDVRL-----GGTKKFGYVDFASEEELQKALELNGKKLLGQPVKLDKARSK----- 367
Query: 500 YSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEE 541
NS Q+ + + A T+F+K S+ +D +R ++
Sbjct: 368 ------ENS-QENKKERDARTLFVKNLPYSITQDDLREIFDQ 402
Score = 128 (50.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA 452
VK+ A S K+ +Q + ++TLFV NLP+S+ Q D++ F + VD+R+
Sbjct: 359 VKLDKARS-KENSQE--NKKERDARTLFVKNLPYSITQDDLREIFDQA---VDIRVPMGN 412
Query: 453 DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQK 511
G +G ++EF + A KA+E G + R+I +DF G++S ++
Sbjct: 413 TGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFT-----------GDKS---RQ 458
Query: 512 GGRG--QAAHTIFIKGFDSSVGEDQVRASLEE 541
GGRG A+ + + S ED +++ E+
Sbjct: 459 GGRGAPSASKVLVVNNLAFSASEDSLQSVFEK 490
Score = 38 (18.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 9 TPTKSAKKGGKREAEDAIEK 28
TP AKK G +A++ E+
Sbjct: 225 TPAPKAKKAGMVKAKEESEE 244
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 189 (71.6 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 60/183 (32%), Positives = 91/183 (49%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSE-VAEVVDVRLSSDAD-GRFKGYGHVEFASVEDA 470
+G ++FVG+L V A + FSE V ++ DA+ GR KGYG V F +
Sbjct: 195 NGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 254
Query: 471 HKAI-ELNGQMLGNRAIRLDFA--RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
KA+ E+NG +RA+R+ A R+ Y G S +F + TIF+ G D
Sbjct: 255 TKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLD 314
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
SSV ++ L++ F GEI + +P G KG ++ F + + +ALE ++GT
Sbjct: 315 SSVTDED----LKQPFSEFGEIVSVKIP----VG--KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 587 EIG 589
IG
Sbjct: 365 VIG 367
Score = 127 (49.8 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFS--EVAEVVDVR-LSSDADGRFKGYGHVEFASVED 469
+G +KT++VG+L +++A + + F+ E E+V ++ + + +G +GYG VEF S +
Sbjct: 99 NGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDV 158
Query: 470 AHKAI-ELNGQMLGN--RAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGF 526
A K + E NG + N + RL++A +S G + + G + IF+
Sbjct: 159 ADKVLQEFNGAPMPNTDQPFRLNWAS-------FSTGEKR--LENNGPDLS---IFVGDL 206
Query: 527 DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSG 585
V + + + E + S + V D +TG KG ++ F D + KA+ EM+G
Sbjct: 207 APDVSDALLHETFSEKYPS---VKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263
Query: 586 TEIGGYSLVVDEA 598
+ ++ + A
Sbjct: 264 VKCSSRAMRIGPA 276
Score = 125 (49.1 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 409 FTPQSGGS--KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFAS 466
FT G + T+FVG L SV D++ FSE E+V V++ KG G V+F +
Sbjct: 296 FTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-----KGCGFVQFVN 350
Query: 467 VEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSG-GNE 505
+A +A+E LNG ++G + +RL + R P GN+
Sbjct: 351 RPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQ 391
>UNIPROTKB|Q1JPH6 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:BT025377 EMBL:BT030478 IPI:IPI00691331 RefSeq:NP_001069220.1
UniGene:Bt.57927 UniGene:Bt.89526 ProteinModelPortal:Q1JPH6
SMR:Q1JPH6 PRIDE:Q1JPH6 GeneID:517409 KEGG:bta:517409 CTD:7458
HOVERGEN:HBG018193 NextBio:20872431 ArrayExpress:Q1JPH6
Uniprot:Q1JPH6
Length = 228
Score = 168 (64.2 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 38/106 (35%), Positives = 63/106 (59%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFA----RERGAYTPYSGGNESNSFQK---GGRG 515
+G +LG+R++R+D A +++G + GG + F+ GGRG
Sbjct: 102 DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRG 147
>UNIPROTKB|I3L594 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 CTD:7458 EMBL:FP340223
RefSeq:NP_001230377.1 UniGene:Ssc.54702 Ensembl:ENSSSCT00000029656
GeneID:100627717 KEGG:ssc:100627717 Uniprot:I3L594
Length = 228
Score = 168 (64.2 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 38/106 (35%), Positives = 63/106 (59%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFA----RERGAYTPYSGGNESNSFQK---GGRG 515
+G +LG+R++R+D A +++G + GG + F+ GGRG
Sbjct: 102 DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRG 147
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 54/188 (28%), Positives = 89/188 (47%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF
Sbjct: 160 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDST 219
Query: 469 DAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS 528
AI L GQ R + + + ++ Q+GG G +++
Sbjct: 220 SVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMASMLQRGGAGPMR--LYVGSLHF 273
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
++ ED +R E G+I I + D +TG KG ++ F DA+ KALE ++G E
Sbjct: 274 NITEDMLRGIFEPF----GKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFE 329
Query: 588 IGGYSLVV 595
+ G + V
Sbjct: 330 LAGRPMKV 337
Score = 148 (57.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 393 VKMVDAESGKKAAQTPFTPQSG-GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + G G L+VG+L F++ + ++ F ++ ++L D
Sbjct: 239 VQASQAEKNRAAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMD 298
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + FA E A KA+E LNG L R +++ ER + S +++
Sbjct: 299 SETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDEL 358
Query: 510 QKGG 513
++ G
Sbjct: 359 ERTG 362
>TAIR|locus:2028205 [details] [associations]
symbol:AT1G45100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00546918 RefSeq:NP_175125.1 UniGene:At.52038
ProteinModelPortal:F4HPM6 SMR:F4HPM6 PRIDE:F4HPM6
EnsemblPlants:AT1G45100.1 GeneID:841077 KEGG:ath:AT1G45100
OMA:SAYGANK ArrayExpress:F4HPM6 Uniprot:F4HPM6
Length = 497
Score = 187 (70.9 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 403 KAAQTP-FTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGH 461
K ++P F ++ +KTLFV NL S++ +D+ NFF +V EVV VRL ++ G+ G+G
Sbjct: 232 KGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGF 291
Query: 462 VEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492
VEFAS +A KA+ NG+ L N I LD A+
Sbjct: 292 VEFASANEAEKALVKNGEYLHNYKISLDGAK 322
Score = 137 (53.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVED 469
TP + + V NL + A ++ FF+ VA+VV VRL + +G+ GYG VEFAS
Sbjct: 151 TPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYG 210
Query: 470 AHKAIE-LNGQMLGNRAIRL 488
A+KA+E NG+ L N I L
Sbjct: 211 ANKALEEKNGEYLHNHKILL 230
Score = 116 (45.9 bits), Expect = 0.00091, P = 0.00091
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 393 VKMVDAESGKKAAQTP-FTPQSGGSK-TLFVGNLPFSVEQA--DVQNFFSEVAEVVDVRL 448
+K V+ G +TP F + K T+FV NLP++ + NFFS+V E+V +R+
Sbjct: 350 IKEVEGVEGLD--ETPDFLEEVAARKNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRI 407
Query: 449 SSDADGRFKGYGHVEFASVEDAHKAIE 475
D G G G VEF S +A KA++
Sbjct: 408 IVDHMGEPVGCGFVEFNSSNEAEKALQ 434
Score = 72 (30.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 23/97 (23%), Positives = 43/97 (44%)
Query: 503 GNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
G+ES F + T+F+ S+ Q+ + + F GE+ + + + G
Sbjct: 233 GHESPGFAE--EAAITKTLFVANLRDSI---QI-SDIINFFKDVGEVVHVRLIVN-SQGK 285
Query: 563 VKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAK 599
G +++F A+ KAL +G + Y + +D AK
Sbjct: 286 HAGWGFVEFASANEAEKALVKNGEYLHNYKISLDGAK 322
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 124 (48.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ SSV E R+ HF GEIT + +PKDY++ +GI ++ F+ ADS
Sbjct: 93 IFVARIPSSVSESDFRS----HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDL 148
Query: 581 LEMSGTEIGGYSLVVDEA 598
+E + ++GG ++ VD A
Sbjct: 149 MEDTH-DLGGTTVAVDRA 165
Score = 106 (42.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ L V +P+ ++ ++++ S+ ++ D + D + GR +G+G+V FAS EDA A++
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 476 LNGQMLGNRAIRLDFA 491
LGNR + + A
Sbjct: 63 -GEHFLGNRILEVKVA 77
Score = 89 (36.4 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELN 477
+FV +P SV ++D ++ F E+ D+ + D + + +G G + F+S + +E +
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-D 151
Query: 478 GQMLGNRAIRLDFA 491
LG + +D A
Sbjct: 152 THDLGGTTVAVDRA 165
Score = 69 (29.3 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 513 GRGQ-AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571
GRG+ I K F + ++ L ++FG G I +PKD +G ++ F
Sbjct: 229 GRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
Query: 572 TDADSFNKALEMSGTEIGGYSLVVDEA 598
+ ++ S EI G + +D A
Sbjct: 289 AENGVADRVARRSH-EICGQEVAIDSA 314
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 186 (70.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 44/119 (36%), Positives = 69/119 (57%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF-K 457
+ KK TP P S TLF+GNL F+ ++ + F++ EVV VR+ + + K
Sbjct: 253 DRAKKFGDTPSEP----SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPK 308
Query: 458 GYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
G+G+V+F+++EDA KA++ L G+ + NR +RLDF+ R GG+ + GGRG
Sbjct: 309 GFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRG 367
Score = 170 (64.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 52/204 (25%), Positives = 94/204 (46%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGR 455
D ES K + T + T+FVG L +S++ ++ F + V+ R+ + R
Sbjct: 151 DEESSNKKQKNEETEEPA---TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR 207
Query: 456 FKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
+GYG+V+F + A KAI E+ G+ + R I D + + A GN + + G
Sbjct: 208 SRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPA------GNNDRAKKFGDT 261
Query: 515 -GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
+ + T+F+ + D ++ E F GE+ + +P +T KG Y+ F++
Sbjct: 262 PSEPSDTLFLGNLSFNADRD----AIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSN 317
Query: 574 ADSFNKALE-MSGTEIGGYSLVVD 596
+ KAL+ + G I + +D
Sbjct: 318 MEDAKKALDALQGEYIDNRPVRLD 341
Score = 37 (18.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 15 KKGGKREAEDAIEKLVSAKKQKGND 39
KK +AE+ ++ S KKQK +
Sbjct: 139 KKRKSEDAEEEEDEESSNKKQKNEE 163
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 181 (68.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 55/183 (30%), Positives = 87/183 (47%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIEL 476
+T++V ++ SV + + FS +VVD R+ D + + VEFA + AH+A+ L
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR-FAFVEFADDQGAHEALSL 199
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G MLG +R+ + A P + S + R TI+ D V + VR
Sbjct: 200 GGTMLGFYPVRV--LPSKTAILPVNPTFLPRSEDE--REMCTRTIYCTNIDKKVSQADVR 255
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596
E +CGE+TR+ + D S + IA+++F ADS AL SG +G + V
Sbjct: 256 NFFES---ACGEVTRLRLLGD-QLHSTR-IAFVEFALADSALSALNCSGMVVGSQPIRVS 310
Query: 597 EAK 599
+K
Sbjct: 311 PSK 313
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 149 (57.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 402 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 458
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 459 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 504
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 505 EETLKESFD 513
Score = 114 (45.2 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + V++RL S DG+ KG ++EF + DA K +E
Sbjct: 319 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK-DGKSKGIAYIEFKTEADAEKTLE 374
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNES 506
+ +D+ E+G + GG S
Sbjct: 375 ------EKQGTEIDYTGEKGQSQDHRGGKNS 399
Score = 110 (43.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 36/109 (33%), Positives = 56/109 (51%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDA 470
+S SKTLFV L + ++ F + R+ +D + G KG+G V+F S EDA
Sbjct: 487 RSQPSKTLFVKGLSEDTTEETLKESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDA 543
Query: 471 HKAIEL--NGQMLGNRAIRLDFARERG--AYTPYSGGNESNSFQKGGRG 515
A E +G++ GN+ + LD+A+ +G + GG + GGRG
Sbjct: 544 KAAKEAMEDGEIDGNK-VTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRG 591
Score = 109 (43.4 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G I R + D +TGS KG ++DF
Sbjct: 487 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 539
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 540 EEDAKAAKEAMEDGEIDGNKVTLDWAK 566
Score = 103 (41.3 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 33/108 (30%), Positives = 54/108 (50%)
Query: 384 KTPKKNVTDV-KMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAE 442
+ P K ++ K A KK P + S LFVGNL F+ +++ S++
Sbjct: 202 EAPGKRKKEMAKQKAAPEAKKQKVEGTEPTT--SFNLFVGNLNFNKSAPELKTGISDLFA 259
Query: 443 VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLD 489
D+ + G + +G+V+F S ED KA+EL G ++ GN I+L+
Sbjct: 260 KNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLE 306
Score = 82 (33.9 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF-TDADS 576
A T+ K V +D+ L+E F EI +S KD G KGIAY++F T+AD+
Sbjct: 319 ARTLLAKNLPYKVTQDE----LKEVFEDAVEIRLVS--KD---GKSKGIAYIEFKTEADA 369
Query: 577 FNKALEMSGTEI 588
E GTEI
Sbjct: 370 EKTLEEKQGTEI 381
Score = 53 (23.7 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 385 TP-KKNVTDVKMVDAESGKKAAQTP 408
TP KK T K V A SGKK A +P
Sbjct: 61 TPGKKRATPGKAVVATSGKKGAASP 85
Score = 43 (20.2 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 8 ATPTKSAKKGGKREAEDAIEKLVSAKKQKGND 39
A+P K AK G ED+ E+ +++ +D
Sbjct: 83 ASPGKGAKNGKNARKEDSDEEDEDDSEEEDDD 114
Score = 40 (19.1 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 386 PKKNVTDVKMVDAESGKKAAQTP 408
P+K VT K V GKK A TP
Sbjct: 49 PQKKVTPAKAV-VTPGKKRA-TP 69
Score = 37 (18.1 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 82 KAVVTNKGGKAAKPPVK 98
KAVV G K A P K
Sbjct: 71 KAVVATSGKKGAASPGK 87
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 183 (69.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 54/176 (30%), Positives = 93/176 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE-L 476
+FVG+L V+ ++ F +V D ++ D + + KGYG V + E+A +AIE +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 477 NGQMLGNRAIRLDFA-RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
NGQ LG R IR ++A R+ G S NE + + + +T G +S+ ED++
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 256
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGG 590
R + F S G IT + + K ++G A++ F + D+ KA+ +M+ ++GG
Sbjct: 257 R----QGFASFGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQMNNQDVGG 302
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 186 (70.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 55/202 (27%), Positives = 93/202 (46%)
Query: 402 KKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGH 461
KK ++ F ++V N+ + + + FS ++ + L D DG+ KG+G
Sbjct: 218 KKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGF 277
Query: 462 VEFASVEDAHKAIE-LNGQMLGNRAIRLDFA-RERGAYTPYSGGNESNSFQKGGRGQAAH 519
V F E A KA+E LN + + + I + A ++R E+ +K + Q +
Sbjct: 278 VNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVN 337
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+F+K D ++ ++ LEE F G IT V D + G KG ++ FT + K
Sbjct: 338 -LFVKNLDDTIDSEK----LEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATK 391
Query: 580 AL-EMSGTEIGGYSLVVDEAKQ 600
A+ EM+ I G L V A++
Sbjct: 392 AITEMNTRMINGKPLYVALAQR 413
Score = 172 (65.6 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 54/189 (28%), Positives = 99/189 (52%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G +F+ NL +++ + + FS +++ ++++D G+ K +G V + + E A AI
Sbjct: 138 GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAI 197
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHT-IFIKGFDSSVGE 532
E +NG +L +R + F G + S + + F++ +A T I++K D + E
Sbjct: 198 ENVNGMLLNDREV---FV---GKHI--SKKDRESKFEEM---KANFTNIYVKNIDLNYSE 246
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGY 591
+ S E+ F G+IT I + KD D G KG +++F D +S KA+E ++ EI G
Sbjct: 247 E----SFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQ 301
Query: 592 SLVVDEAKQ 600
+ V A++
Sbjct: 302 KIYVGRAQK 310
>TAIR|locus:4010713942 [details] [associations]
symbol:AT5G03495 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR012677 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
HOGENOM:HOG000137610 EMBL:AK176568 IPI:IPI00517023
RefSeq:NP_001078524.1 UniGene:At.71317 ProteinModelPortal:Q67YA0
SMR:Q67YA0 PaxDb:Q67YA0 PRIDE:Q67YA0 EnsemblPlants:AT5G03495.1
GeneID:5008197 KEGG:ath:AT5G03495 TAIR:At5g03495 eggNOG:NOG282630
OMA:RCEDKAL PhylomeDB:Q67YA0 ProtClustDB:CLSN2920194
Genevestigator:Q67YA0 Uniprot:Q67YA0
Length = 226
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
I ++G+D+ + E V+ LE+HF SCG+IT I VP+D++ G +K +A++ KA
Sbjct: 31 ISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVAFMCIKGEGGEEKA 90
Query: 581 LEMSGTEIGGYSLVVDEA 598
L +SGT+ GG++ +V A
Sbjct: 91 LLLSGTDAGGWTAIVKPA 108
Score = 121 (47.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578
H + + G+D+ V + ++ +L EHF SCGE+T++ V +GS G YL + +
Sbjct: 128 HRVRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVV---LPSGS--GSIYLQGERCE--D 180
Query: 579 KALEMSGTEIGGYSLVVD 596
KAL+++G ++GG +LVV+
Sbjct: 181 KALQLNGCKMGGMNLVVE 198
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 184 (69.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 54/183 (29%), Positives = 88/183 (48%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIE 475
+T+F +P + DV FFS+ +V DVRL D + R KG G++EF V AI
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 476 LNGQM-LGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
L+GQ+ LG + E+ +SNS GG G A +++ ++ E Q
Sbjct: 228 LSGQLFLGQPVMVKPSEAEKNLA-------QSNSTTVGGTGPADRKLYVGNLHFNMSELQ 280
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA-LEMSGT-EIGGYS 592
+R + F + G + + +P D +TG KG ++ F + A + ++G EI G +
Sbjct: 281 LR----QIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRT 336
Query: 593 LVV 595
+ V
Sbjct: 337 IKV 339
Score = 42 (19.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 15 KKGGKREAEDA-IEKLVSAKKQKGN-DG 40
++GG+R+ E+ E+ VS++ +K DG
Sbjct: 38 REGGERQGEEGGEEERVSSRSKKSRGDG 65
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 183 (69.5 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 53/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 30 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 88
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 89 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 134
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L+E FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 135 GEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 193
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 194 GKQIYVGRAQK 204
Score = 146 (56.5 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 45/185 (24%), Positives = 88/185 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ ++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 188
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 189 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 247
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 248 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
Query: 596 DEAKQ 600
A++
Sbjct: 302 ALAQR 306
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 183 (69.5 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 53/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L+E FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 146 (56.5 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 45/185 (24%), Positives = 88/185 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ ++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 183 (69.5 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 53/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L+E FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 146 (56.5 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 45/185 (24%), Positives = 88/185 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ ++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 174 (66.3 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 53/156 (33%), Positives = 78/156 (50%)
Query: 394 KMVDAESGKKAAQTPFTP---QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSS 450
++ +AE ++A + + S L+VGN+ FS+++ D+Q+ F E+ V+L
Sbjct: 247 QLTEAEKNRQARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQK 306
Query: 451 DADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD-----FARERGAYTPYSGGN 504
D GR +GYG V+F A +A+E +NG LG RAIR+ F E T N
Sbjct: 307 DETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSAN 366
Query: 505 ESNSFQ------KGGRG-QAAHTIFIKGFDSSVGED 533
+SN FQ GGRG QA T FD + G +
Sbjct: 367 QSN-FQGSMFSGSGGRGVQAGGT---SNFDRAGGRE 398
Score = 163 (62.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 53/182 (29%), Positives = 90/182 (49%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+T+FV L + ++ FF +V V + ++ D GR KG G+VEF AI+
Sbjct: 174 RTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQ 233
Query: 476 LNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
L GQ +LG I E+ S E++S K H +++ S+ E+
Sbjct: 234 LTGQKLLGIPIIAQLTEAEKNRQARNS---EASSGNK--HSAPFHRLYVGNIHFSIDEND 288
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593
++ S+ E FG E+ + + KD +TG +G ++ F D + +ALE M+G ++GG ++
Sbjct: 289 LQ-SVFEPFG---ELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAI 343
Query: 594 VV 595
V
Sbjct: 344 RV 345
Score = 50 (22.7 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 532 EDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590
ED VRA EE +G + I++ D S +G YL F A++ ++G GG
Sbjct: 478 EDDVRAECEEKYG---HVVHIAL----DPNS-QGDIYLKFDRVQGGENAIKGLNGRFFGG 529
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 177 (67.4 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 51/170 (30%), Positives = 80/170 (47%)
Query: 428 VEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486
+ D++ FFS V +V DVR+ SD + R KG +VEF V AI L GQ R +
Sbjct: 7 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ----RVL 62
Query: 487 RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSC 546
+ + +N+ QKG G +++ ++ ED +R E
Sbjct: 63 GVPIIVQASQAEKNRAAAMANNLQKGSAGPMR--LYVGSLHFNITEDMLRGIFEPF---- 116
Query: 547 GEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595
G I I + D +TG KG ++ F+D++ KALE ++G E+ G + V
Sbjct: 117 GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 166
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 393 VKMVDAESGKKAAQTPFTPQ-SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
V+ AE + AA + S G L+VG+L F++ + ++ F + ++L D
Sbjct: 68 VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 127
Query: 452 AD-GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
++ GR KGYG + F+ E A KA+E LNG L R +++ ER + S +S+
Sbjct: 128 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 187
Query: 510 QKGG 513
++ G
Sbjct: 188 ERTG 191
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 181 (68.8 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIDKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
G+D L+E FG G + V D D G KG ++ F + KA+ EM+G ++
Sbjct: 199 GDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMN 257
Query: 590 GYSLVVDEAKQ 600
G S+ V A++
Sbjct: 258 GKSMFVGRAQK 268
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 43/185 (23%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N + ++ F + + V++ +D +G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + +++ + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 180 (68.4 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 49 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 107
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 108 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 153
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 154 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 212
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 213 GKQIYVGRAQK 223
Score = 147 (56.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 207
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 208 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 266
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 267 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 320
Query: 596 DEAKQ 600
A++
Sbjct: 321 ALAQR 325
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 180 (68.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 128 (50.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 37/156 (23%), Positives = 75/156 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572
+ F G IT V + G KG ++ F+
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFS 341
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/188 (27%), Positives = 96/188 (51%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G+ +F+ NL S++ + + FS +V +++ D+ G+ KGYG V++A+ E A KAI
Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAI 181
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
E LNG +L ++ + + P+ E +S + + + +++K S +D
Sbjct: 182 EKLNGMLLNDKQVYVG---------PFLRRQERDS--TANKTKFTN-VYVKNLAESTTDD 229
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
L+ FG G+IT V KD + G KG +++F +AD +A+E ++G +
Sbjct: 230 D----LKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE 284
Query: 593 LVVDEAKQ 600
V A++
Sbjct: 285 WYVGRAQK 292
Score = 128 (50.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 51/164 (31%), Positives = 77/164 (46%)
Query: 384 KTPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEV 443
+TP + V A SG A T F G+ +L+VG+L F+V + + + F ++ V
Sbjct: 9 QTPNGSTAAVTSAPATSGGATA-TQF-----GNTSLYVGDLDFNVTDSQLFDAFGQMGTV 62
Query: 444 VDVRLSSD-ADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYS 501
V VR+ D R GYG+V F + +DA +AI ELN L + IR+ YS
Sbjct: 63 VTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV----------MYS 112
Query: 502 GGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGS 545
+ S ++ G G IFIK D S+ + + FG+
Sbjct: 113 --HRDPSVRRSGAGN----IFIKNLDESIDHKALHDTFSS-FGN 149
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 147 (56.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 147 (56.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 147 (56.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 147 (56.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 147 (56.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 52/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 147 (56.8 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 149 (57.5 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 397 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 453
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 454 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 499
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 500 EETLKESFD 508
Score = 114 (45.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + V++RL S DG+ KG ++EF + DA K +E
Sbjct: 314 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK-DGKSKGIAYIEFKTEADAEKTLE 369
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNES 506
+ +D+ E+G + GG S
Sbjct: 370 ------EKQGTEIDYTGEKGQSQDHRGGKNS 394
Score = 109 (43.4 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G I R + D +TGS KG ++DF
Sbjct: 482 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 534
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 535 EEDAKAAKEAMEDGEIDGNKVTLDWAK 561
Score = 103 (41.3 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 33/108 (30%), Positives = 54/108 (50%)
Query: 384 KTPKKNVTDV-KMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAE 442
+ P K ++ K A KK P + S LFVGNL F+ +++ S++
Sbjct: 197 EAPGKRKKEMAKQKAAPEAKKQKVEGTEPTT--SFNLFVGNLNFNKSAPELKTGISDLFA 254
Query: 443 VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLD 489
D+ + G + +G+V+F S ED KA+EL G ++ GN I+L+
Sbjct: 255 KNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLE 301
Score = 82 (33.9 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF-TDADS 576
A T+ K V +D+ L+E F EI +S KD G KGIAY++F T+AD+
Sbjct: 314 ARTLLAKNLPYKVTQDE----LKEVFEDAVEIRLVS--KD---GKSKGIAYIEFKTEADA 364
Query: 577 FNKALEMSGTEI 588
E GTEI
Sbjct: 365 EKTLEEKQGTEI 376
Score = 45 (20.9 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 388 KNVTDVKMVDAESGKKAAQTP 408
K T K V A SGKK A +P
Sbjct: 34 KRATPGKAVVATSGKKGAASP 54
Score = 41 (19.5 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 8 ATPTKSAKKGGKREAEDAIEK 28
A+P K AK G ED+ E+
Sbjct: 52 ASPGKGAKNGKNARKEDSDEE 72
Score = 37 (18.1 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 82 KAVVTNKGGKAAKPPVK 98
KAVV G K A P K
Sbjct: 40 KAVVATSGKKGAASPGK 56
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 178 (67.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 56/192 (29%), Positives = 92/192 (47%)
Query: 403 KAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRL-SSDADGRFKGYGH 461
+ T +P+ ++T+F L V D++ FFS V +V DVRL + + RFKG +
Sbjct: 223 RTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAY 282
Query: 462 VEFASVEDAHKAIELNGQMLGNRAIRLDFAR-ERGAYTPYSGGNESNSFQ-KGGRGQAAH 519
+EF E A+ L+GQ L I + + E+ N + +FQ K G
Sbjct: 283 IEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQ-----NAAPAFQPKSHTGPMR- 336
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+++ ++ ED +R E G+I I + D +TG KG ++ + +AD K
Sbjct: 337 -LYVGSLHFNITEDMLRGIFEPF----GKIDAIQLIMDTETGRSKGYGFITYHNADDAKK 391
Query: 580 ALE-MSGTEIGG 590
ALE ++G E+ G
Sbjct: 392 ALEQLNGFELAG 403
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 47/189 (24%), Positives = 99/189 (52%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G +F+ NL +++ + + F+ ++ +++ D +G KGYG V + + E A +AI
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAI 206
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHT-IFIKGFDSSVGE 532
+ +NG +L + + + G + P + + F + +A T I++K + V +
Sbjct: 207 KHVNGMLLNEKKVYV------GHHIPKK--DRQSKFDEM---KANFTNIYVKNINPEVTD 255
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
D+ R E++ G++T S+ +D +TG +G +++FT + +KA+ E++ E G
Sbjct: 256 DEFRTLFEKY----GDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQ 311
Query: 592 SLVVDEAKQ 600
+L V A++
Sbjct: 312 NLYVGRAQK 320
Score = 129 (50.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 45/172 (26%), Positives = 76/172 (44%)
Query: 402 KKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYG 460
KK Q+ F ++V N+ V + + F + +V L+ D + G+ +G+G
Sbjct: 227 KKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFG 286
Query: 461 HVEFASVEDAHKAI-ELN-----GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
V F S EDA KA+ ELN GQ L + RE Y + +K +
Sbjct: 287 FVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQ----EKASK 342
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFG--SCGEITRISVPKDYDTGSVK 564
Q + ++IK D V ++++R E FG + ++ R S+ + + G K
Sbjct: 343 YQGVN-LYIKNLDDEVDDEKLRQLFSE-FGPITSAKVMRDSITEPGEEGESK 392
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 561 GSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
G KG ++ F + D KA+ EM+ + L V A++
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQR 470
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 175 (66.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 62/207 (29%), Positives = 103/207 (49%)
Query: 400 SGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFF-SEVAEVVDVRLSSDAD-GRFK 457
+G+K A+T G ++FVG+L V +++ F S + ++ DA+ G K
Sbjct: 166 TGEKRAET------GSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSK 219
Query: 458 GYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFA--RERGAYTPYS-------GGNESN 507
GYG V F + +A+ E+NG +RA+R+ A ++ A+ YS GG SN
Sbjct: 220 GYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASN 279
Query: 508 SFQKGGR---GQAAHT-IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSV 563
G G +++T IF+ G DS V ++++R S F GE+ + +P G
Sbjct: 280 GAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQS----FNQFGEVVSVKIP----AG-- 329
Query: 564 KGIAYLDFTDADSFNKALE-MSGTEIG 589
KG ++ F+D S +A++ +SG IG
Sbjct: 330 KGCGFVQFSDRSSAQEAIQKLSGAIIG 356
Score = 133 (51.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 51/191 (26%), Positives = 95/191 (49%)
Query: 402 KKAAQTPFTPQSGG--SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKG 458
+K Q+P QS +KT+++G+L ++++ + + FS+ EV+ V++ + G+ +
Sbjct: 67 QKMQQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSER 126
Query: 459 YGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
YG VEF + A K ++ NG M+ N + RL++A G +S G +K
Sbjct: 127 YGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWA---G----FSTG------EKRAET 173
Query: 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575
+ +IF+ S V + +R + + S + V D +TG KG ++ F D
Sbjct: 174 GSDFSIFVGDLASDVTDTMLRDTFASRYPS---LKGAKVVVDANTGHSKGYGFVRFGDES 230
Query: 576 SFNKAL-EMSG 585
++A+ EM+G
Sbjct: 231 ERSRAMTEMNG 241
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 110 (43.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/108 (27%), Positives = 54/108 (50%)
Query: 384 KTPK-KNVTDVKMVDAESGKKAAQTPF---TPQSGGSKTLFVGNLPFSVEQADVQNFFSE 439
K P +N + + ++A G++ A +P + G K +FVG L + + D++++F++
Sbjct: 28 KAPAGQNGAEGEQINASKGEEDAGCVADISSPLTEGVK-MFVGGLSWDTSKKDLKDYFAK 86
Query: 440 VAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486
EV D + D + GR +G+G + F E K +E L R I
Sbjct: 87 FGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLI 134
Score = 108 (43.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + GEDQ+R E+F + GEI I +P D T +G ++ F + D K
Sbjct: 150 IFVGGLNPEAGEDQIR----EYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKI 205
Query: 581 LEMSGTEIGG 590
LE + G
Sbjct: 206 LEKKFHNVSG 215
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 409 FTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASV 467
FT + G + LF+G L F + + FS+ +VV+ ++ D R KG+G V FAS
Sbjct: 26 FTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA 85
Query: 468 EDAHKAI-ELNGQMLGNRAIRLDFARER 494
++A KA+ E NGQ L R I +D+A+ +
Sbjct: 86 DEAQKALMEFNGQQLNGRTIFVDYAKAK 113
Score = 106 (42.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 32/98 (32%), Positives = 45/98 (45%)
Query: 504 NESNS-FQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
N S S F RG A+ +FI G E L E F CG++ + D +
Sbjct: 19 NSSASCFFTQRRGVASK-LFIGGLSFCTTEQ----GLSEAFSKCGQVVEAQIVMDRVSDR 73
Query: 563 VKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVVDEAK 599
KG ++ F AD KAL E +G ++ G ++ VD AK
Sbjct: 74 SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAK 111
>UNIPROTKB|F1NYA2 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
Length = 146
Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ V VRL D + +FKG+ +VEF VE +A+
Sbjct: 41 TAYVGNLPFNTVQGDIDAIFKDLS-VRSVRLVRDKETDKFKGFCYVEFDEVESLKEALTY 99
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG 513
+G +LG+R++R+D A R GG F+KGG
Sbjct: 100 DGALLGDRSLRVDIAEGR---KQDKGGF---GFRKGG 130
>UNIPROTKB|Q15056 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=TAS] [GO:0016281 "eukaryotic translation
initiation factor 4F complex" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0048471 GO:GO:0019048 GO:GO:0000166
GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:CH471200 Orphanet:904 eggNOG:COG0724 Reactome:REACT_1762
CTD:7458 HOVERGEN:HBG018193 EMBL:AF045555 EMBL:D26068 EMBL:AK290676
EMBL:BC010021 EMBL:BC021214 EMBL:BC066928 IPI:IPI00014263
IPI:IPI00375127 RefSeq:NP_071496.1 RefSeq:NP_114381.1
UniGene:Hs.520943 ProteinModelPortal:Q15056 SMR:Q15056
IntAct:Q15056 STRING:Q15056 PhosphoSite:Q15056 DMDM:18276665
PaxDb:Q15056 PRIDE:Q15056 DNASU:7458 Ensembl:ENST00000265753
Ensembl:ENST00000353999 Ensembl:ENST00000575843
Ensembl:ENST00000575925 GeneID:7458 KEGG:hsa:7458 UCSC:uc003uad.1
UCSC:uc003uae.1 GeneCards:GC07P073588 HGNC:HGNC:12741 HPA:HPA030542
MIM:603431 neXtProt:NX_Q15056 PharmGKB:PA162384997
HOGENOM:HOG000013063 InParanoid:Q15056 OMA:PRTVSEP
OrthoDB:EOG46DM3S PhylomeDB:Q15056 ChEMBL:CHEMBL1293274
ChiTaRS:EIF4H GenomeRNAi:7458 NextBio:29206 ArrayExpress:Q15056
Bgee:Q15056 CleanEx:HS_EIF4H Genevestigator:Q15056 Uniprot:Q15056
Length = 248
Score = 166 (63.5 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 53/158 (33%), Positives = 78/158 (49%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG---RGQAAHTIFIKGFDSSVGED 533
+G +LG+R++R+D A R GG F+KGG RG + G+DS D
Sbjct: 102 DGALLGDRSLRVDIAEGR---KQDKGGF---GFRKGGPDDRGMGSSRESRGGWDS---RD 152
Query: 534 QVRASLEEHF-GSCGEITRISVPKDYDTGSVKGIAYLD 570
+ + F G G S P D TG G + D
Sbjct: 153 DFNSGFRDDFLGGRGG----SRPGDRRTGPPMGSRFRD 186
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 149 (57.5 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 402 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 458
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 459 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 504
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 505 EETLKESFD 513
Score = 114 (45.2 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + V++RL S DG+ KG ++EF + DA K +E
Sbjct: 319 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK-DGKSKGIAYIEFKTEADAEKTLE 374
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNES 506
+ +D+ E+G + GG S
Sbjct: 375 ------EKQGTEIDYTGEKGQSQDHRGGKNS 399
Score = 109 (43.4 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G I R + D +TGS KG ++DF
Sbjct: 487 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 539
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 540 EEDAKAAKEAMEDGEIDGNKVTLDWAK 566
Score = 103 (41.3 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 33/108 (30%), Positives = 54/108 (50%)
Query: 384 KTPKKNVTDV-KMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAE 442
+ P K ++ K A KK P + S LFVGNL F+ +++ S++
Sbjct: 202 EAPGKRKKEMAKQKAAPEAKKQKVEGTEPTT--SFNLFVGNLNFNKSAPELKTGISDLFA 259
Query: 443 VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLD 489
D+ + G + +G+V+F S ED KA+EL G ++ GN I+L+
Sbjct: 260 KNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLE 306
Score = 82 (33.9 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF-TDADS 576
A T+ K V +D+ L+E F EI +S KD G KGIAY++F T+AD+
Sbjct: 319 ARTLLAKNLPYKVTQDE----LKEVFEDAVEIRLVS--KD---GKSKGIAYIEFKTEADA 369
Query: 577 FNKALEMSGTEI 588
E GTEI
Sbjct: 370 EKTLEEKQGTEI 381
Score = 42 (19.8 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 392 DVKMVDAESGKKAAQTP 408
D K V A SGKK A +P
Sbjct: 38 DGKAVVATSGKKGAASP 54
Score = 41 (19.5 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 8 ATPTKSAKKGGKREAEDAIEK 28
A+P K AK G ED+ E+
Sbjct: 52 ASPGKGAKNGKNARKEDSDEE 72
Score = 37 (18.1 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 82 KAVVTNKGGKAAKPPVK 98
KAVV G K A P K
Sbjct: 40 KAVVATSGKKGAASPGK 56
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 174 (66.3 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 60/184 (32%), Positives = 90/184 (48%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSE-VAEVVDVRLSSDAD-GRFKGYGHVEFASVEDA 470
+G ++FVG+L V + FSE V ++ DA+ GR KGYG V F +
Sbjct: 193 NGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 252
Query: 471 HKAI-ELNGQMLGNRAIRLDFA--RERGAYTPYSGGNESNSFQKGGRGQAAHT-IFIKGF 526
KA+ E+NG +RA+R+ A R+ Y GG N G +T IF+ G
Sbjct: 253 TKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ-QGGYMPNGTLTRPEGDIMNTTIFVGGL 311
Query: 527 DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSG 585
DSSV ++ L++ F GEI + +P G KG ++ F + + +ALE ++G
Sbjct: 312 DSSVTDED----LKQPFNEFGEIVSVKIP----VG--KGCGFVQFVNRPNAEEALEKLNG 361
Query: 586 TEIG 589
T IG
Sbjct: 362 TVIG 365
Score = 133 (51.9 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 50/193 (25%), Positives = 95/193 (49%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFS--EVAEVVDVR-LSSDADGRFKGYGHVEFASVED 469
+G +KT++VG+L +++A + + F+ + E+V V+ + + +G +GYG VEF S +
Sbjct: 97 NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDV 156
Query: 470 AHKAI-ELNGQMLGN--RAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGF 526
A K + E NG + N + RL++A +S G + + G + IF+
Sbjct: 157 ADKVLREFNGTTMPNTDQPFRLNWAS-------FSTGEKR--LENNGPDLS---IFVGDL 204
Query: 527 DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSG 585
V ++ + + E + S + V D +TG KG ++ F D + KA+ EM+G
Sbjct: 205 SPDVSDNLLHETFSEKYPS---VKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Query: 586 TEIGGYSLVVDEA 598
+ ++ + A
Sbjct: 262 VKCSSRAMRIGPA 274
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-L 476
T+FVG L SV D++ F+E E+V V++ KG G V+F + +A +A+E L
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-----KGCGFVQFVNRPNAEEALEKL 359
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSG-GNE 505
NG ++G + +RL + R P GN+
Sbjct: 360 NGTVIGKQTVRLSWGRNPANKQPRDKYGNQ 389
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 176 (67.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 50/191 (26%), Positives = 93/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A+
Sbjct: 23 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAN 81
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 82 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 131
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ +R E F G+ + V +D +G KG ++ + + NKA+E M+G E+
Sbjct: 132 DDENLR----ELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMS 186
Query: 590 GYSLVVDEAKQ 600
G S+ V A++
Sbjct: 187 GKSIFVGRAQK 197
Score = 169 (64.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 53/207 (25%), Positives = 103/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ +++ FS+ + + V++ D G+
Sbjct: 109 EAELGAKAKE--FT-------NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKS 159
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + ++I + A+++ E ++ R
Sbjct: 160 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 219
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 220 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 272
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 273 EEATKAVTEMNGRIVGSKPLYVALAQR 299
>UNIPROTKB|I3LRD5 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048589 "developmental growth" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
CTD:7458 OMA:PRTVSEP EMBL:FP340223 UniGene:Ssc.54702
GeneID:100627717 KEGG:ssc:100627717 RefSeq:NP_001230376.1
Ensembl:ENSSSCT00000024462 Uniprot:I3LRD5
Length = 248
Score = 165 (63.1 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 53/158 (33%), Positives = 77/158 (48%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG---RGQAAHTIFIKGFDSSVGED 533
+G +LG+R++R+D A R GG F+KGG RG G+DS D
Sbjct: 102 DGALLGDRSLRVDIAEGR---KQDKGGF---GFRKGGPDDRGMGGSRESRGGWDS---RD 152
Query: 534 QVRASLEEHF-GSCGEITRISVPKDYDTGSVKGIAYLD 570
+ + F G G S P D TG G + D
Sbjct: 153 DFNSGFRDDFLGGRGG----SRPGDRRTGPPMGSRFRD 186
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 176 (67.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 50/191 (26%), Positives = 93/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A+
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAN 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ +R E F G+ + V +D +G KG ++ + + NKA+E M+G E+
Sbjct: 203 DDENLR----ELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMS 257
Query: 590 GYSLVVDEAKQ 600
G S+ V A++
Sbjct: 258 GKSIFVGRAQK 268
Score = 169 (64.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 53/207 (25%), Positives = 103/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ +++ FS+ + + V++ D G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + ++I + A+++ E ++ R
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 176 (67.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 50/191 (26%), Positives = 93/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A+
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAN 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ +R E F G+ + V +D +G KG ++ + + NKA+E M+G E+
Sbjct: 203 DDENLR----ELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMS 257
Query: 590 GYSLVVDEAKQ 600
G S+ V A++
Sbjct: 258 GKSIFVGRAQK 268
Score = 169 (64.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 53/207 (25%), Positives = 103/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ +++ FS+ + + V++ D G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + ++I + A+++ E ++ R
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>UNIPROTKB|E2RQG8 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:PNMDFRE EMBL:AAEX03004233
Ensembl:ENSCAFT00000019083 Uniprot:E2RQG8
Length = 251
Score = 165 (63.1 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 50/159 (31%), Positives = 80/159 (50%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 46 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 104
Query: 477 NGQMLGNRAIRLDFA----RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGE 532
+G +LG+R++R+D A +++G + GG + GG G++ G+DS
Sbjct: 105 DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGM--GGPGESRG-----GWDS---R 154
Query: 533 DQVRASLEEHF-GSCGEITRISVPKDYDTGSVKGIAYLD 570
D + + F G G S P D TG G + D
Sbjct: 155 DDFNSGFRDDFLGGRGG----SRPGDRRTGPPMGSRFRD 189
>UNIPROTKB|A7MBG9 [details] [associations]
symbol:WBSCR1 "WBSCR1 protein" species:9913 "Bos taurus"
[GO:0048589 "developmental growth" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063406 IPI:IPI00691331
UniGene:Bt.57927 UniGene:Bt.89526 HOVERGEN:HBG018193
EMBL:DAAA02058194 EMBL:BC151552 SMR:A7MBG9
Ensembl:ENSBTAT00000064159 OMA:PNMDFRE Uniprot:A7MBG9
Length = 222
Score = 159 (61.0 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 38/103 (36%), Positives = 62/103 (60%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFA----RERGAYTPYSGGNESNSFQKGGRG 515
+G +LG+R++R+D A +++G + GG + F GGRG
Sbjct: 102 DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD--FL-GGRG 141
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 164 (62.8 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 53/180 (29%), Positives = 88/180 (48%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + V++RL S DG+ KG ++EF + DA K +E
Sbjct: 402 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK-DGKSKGIAYIEFKTEADAEKTLE 457
Query: 476 -LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
G + R+I L + E+G + GG NS G + T+ + S E+
Sbjct: 458 EKQGTEIDGRSISLYYTGEKGQSQDHRGGK--NSTWSG----ESKTLVLSNLSYSATEE- 510
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGT-EIGGYSL 593
+L+E F T I VP++ + G KG A+++F + +AL EI G ++
Sbjct: 511 ---TLQEVFEKA---THIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 563
Score = 149 (57.5 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 492 SGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGKSKGYAFIEFASFEDAKE 548
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 549 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 594
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 595 EETLKESFD 603
Score = 110 (43.8 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 36/109 (33%), Positives = 56/109 (51%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDA 470
+S SKTLFV L + ++ F + R+ +D + G KG+G V+F S EDA
Sbjct: 577 RSQPSKTLFVKGLSEDTTEETLKESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDA 633
Query: 471 HKAIEL--NGQMLGNRAIRLDFARERG--AYTPYSGGNESNSFQKGGRG 515
A E +G++ GN+ + LD+A+ +G + GG + GGRG
Sbjct: 634 KAAKEAMEDGEIDGNK-VTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRG 681
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G I R + D +TGS KG ++DF
Sbjct: 577 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 629
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 630 EEDAKAAKEAMEDGEIDGNKVTLDWAK 656
Score = 103 (41.3 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 33/108 (30%), Positives = 54/108 (50%)
Query: 384 KTPKKNVTDV-KMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAE 442
+ P K ++ K A KK P + S LFVGNL F+ +++ S++
Sbjct: 285 EAPGKRKKEMAKQKAAPEAKKQKVEGTEPTT--SFNLFVGNLNFNKSAPELKTGISDLFA 342
Query: 443 VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLD 489
D+ + G + +G+V+F S ED KA+EL G ++ GN I+L+
Sbjct: 343 KNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLE 389
Score = 57 (25.1 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 385 TP-KKNVTDVKMVDAESGKKAAQTP 408
TP KK T K V A SGKK A TP
Sbjct: 106 TPGKKGATPGKAVVATSGKKGAATP 130
Score = 48 (22.0 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 8 ATPTKSAKKGGKREAEDAIEKLVSAKKQKGND 39
ATP K AK G + ED+ E+ +++ +D
Sbjct: 128 ATPGKGAKNGKNAKKEDSDEEDEDDSEEEDDD 159
Score = 39 (18.8 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 11/32 (34%), Positives = 11/32 (34%)
Query: 88 KGGKAAKPPVKXXXXXXXXXXXXXXPPKKQPV 119
KG KAA P K P KK V
Sbjct: 52 KGKKAATTPAKKMVVSPTKKVAVATPAKKAVV 83
Score = 38 (18.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 395 MVDAESGKKAAQTP 408
++ + GKKAA TP
Sbjct: 47 VIPQKKGKKAATTP 60
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 82 KAVVTNKGGKAAKPPVK 98
KAVV G K A P K
Sbjct: 116 KAVVATSGKKGAATPGK 132
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 4 APVVATPTKSAKKGGKREAED 24
APV A P K+ + ED
Sbjct: 225 APVKAVPVKAKSTAEDEDEED 245
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 175 (66.7 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 51/191 (26%), Positives = 92/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAD 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ SL+E F G+ + V +D +G KG ++ + + NKA+E M+G EI
Sbjct: 203 DDE----SLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKVIFVGRAQK 268
Score = 166 (63.5 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 53/207 (25%), Positives = 101/207 (48%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ ++ FS+ + + V++ D G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + + I + A+++ E ++ R
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 108 (43.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 138 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 193
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 194 LESRYHQIG 202
Score = 107 (42.7 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 400 SGKKAAQTPFTPQS---GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGR 455
S + + P P S G+K +F+G L + + D+ + S EVVD + +D GR
Sbjct: 32 SPSRFSACPLDPSSFPTSGNK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 90
Query: 456 FKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486
+G+G V F K +EL L + I
Sbjct: 91 SRGFGFVLFKDAASVDKVLELKEHKLDGKLI 121
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 108 (43.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 138 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 193
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 194 LESRYHQIG 202
Score = 107 (42.7 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 400 SGKKAAQTPFTPQS---GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGR 455
S + + P P S G+K +F+G L + + D+ + S EVVD + +D GR
Sbjct: 32 SPSRFSACPLDPSSFPTSGNK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 90
Query: 456 FKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486
+G+G V F K +EL L + I
Sbjct: 91 SRGFGFVLFKDAASVDKVLELKEHKLDGKLI 121
>TAIR|locus:2142634 [details] [associations]
symbol:AT5G03480 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AL162751 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000137610
IPI:IPI00537085 PIR:T48373 RefSeq:NP_195968.1 UniGene:At.54706
ProteinModelPortal:Q9LZD9 SMR:Q9LZD9 EnsemblPlants:AT5G03480.1
GeneID:831825 KEGG:ath:AT5G03480 TAIR:At5g03480 eggNOG:NOG251611
OMA:GWTVIVK PhylomeDB:Q9LZD9 Genevestigator:Q9LZD9 Uniprot:Q9LZD9
Length = 321
Score = 169 (64.5 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 31/81 (38%), Positives = 58/81 (71%)
Query: 516 QAAHT-IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q+ T I ++G+D+S+ E +R +L +HF SCGEIT+I VP+D+ +K ++++
Sbjct: 20 QSTSTAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGE 79
Query: 575 DSFNKALEMSGTEIGGYSLVV 595
+ +KAL++SGT++GG++++V
Sbjct: 80 GAEDKALQLSGTDVGGWTVIV 100
Score = 167 (63.8 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 30/76 (39%), Positives = 53/76 (69%)
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
TI ++G+D+S+ + + LE+HF SCGEI + VP DY+ G +K +A+L + +K
Sbjct: 114 TISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDK 173
Query: 580 ALEMSGTEIGGYSLVV 595
AL++SGT++ G++++V
Sbjct: 174 ALQLSGTDVVGWTVIV 189
Score = 113 (44.8 bits), Expect = 0.00095, P = 0.00095
Identities = 46/169 (27%), Positives = 79/169 (46%)
Query: 433 VQNFFSEVAEVVDVRLSSDAD-GRFKGYG--HVEFASVEDAHKAIELNG-QMLGNRAIRL 488
++ F E+ V + +D + G K +E ED KA++L+G ++G I
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAED--KALQLSGTDVVGWTVI-- 188
Query: 489 DFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE 548
+ + Y N S + H + G+D+S+ E ++ +L +HF SCGE
Sbjct: 189 --VKPSEIF--YD--NSSRAPATTPEASKIHRFRVTGYDASLPEIDIQMALCKHFSSCGE 242
Query: 549 ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597
I +++V S++G +D KALE+SG +G +LVV+E
Sbjct: 243 IWQVTVLSSTAFVSLRGERCVD--------KALELSGCNMGERTLVVNE 283
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 56/201 (27%), Positives = 94/201 (46%)
Query: 398 AESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEV-AEVVDVRLSSD-ADGR 455
A +G+K QT G T+FVG+L V + + F V V ++ D GR
Sbjct: 140 AGAGEKRFQT-----EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGR 194
Query: 456 FKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
KGYG V FA + +A+ E+NGQ R +R+ A + A ++ G
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGD 254
Query: 515 GQAAHT-IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
+T IF+ G D++V +D++++ FG GE+ + +P K ++ + +
Sbjct: 255 NDPNNTTIFVGGLDANVTDDELKSI----FGQFGELLHVKIPPG------KRCGFVQYAN 304
Query: 574 ADSFNKALE-MSGTEIGGYSL 593
S AL ++GT++GG S+
Sbjct: 305 KASAEHALSVLNGTQLGGQSI 325
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 43/174 (24%), Positives = 83/174 (47%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVR-LSSDADGRFKGYGHVEFASVEDAHKAIE 475
K+L++G+L +++ + + F++ E + + + G+ +GYG +EF S A + ++
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 476 L-NGQMLGN--RAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGE 532
NG + + + RL++A+ +G E FQ G HTIF+ V +
Sbjct: 120 TYNGAPMPSTEQTFRLNWAQ--------AGAGEKR-FQTEGPD---HTIFVGDLAPEVTD 167
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSG 585
+ + + +GS + V D TG KG ++ F D + +A+ EM+G
Sbjct: 168 YMLSDTFKNVYGS---VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 164 (62.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 54/180 (30%), Positives = 87/180 (48%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + V++RL S DG+ KG ++EF + DA K E
Sbjct: 397 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK-DGKSKGIAYIEFKTEADAEKTFE 452
Query: 476 -LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
G + R+I L + E+G Y GG NS G + T+ + S E+
Sbjct: 453 EKQGTEIDGRSISLYYTGEKGQSQDYRGGK--NSTWSG----ESKTLVLSNLSYSATEE- 505
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGT-EIGGYSL 593
+L+E F T I VP++ + G KG A+++F + +AL EI G ++
Sbjct: 506 ---TLQEVFEKA---TFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 558
Score = 146 (56.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 487 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 543
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 544 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 589
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 590 EETLKESFD 598
Score = 109 (43.4 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 387 KKNVTDVKMV-DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD 445
KK + K +A+ K A P T S LFVGNL FS +++ S++ D
Sbjct: 286 KKEMAKQKAAPEAKKQKVEATEPTT-----SFNLFVGNLNFSKSAPELKTGISDLFAKND 340
Query: 446 VRLSSDADGRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLD 489
+ + G + +G+V+F S ED KA+EL G ++ GN I+L+
Sbjct: 341 LAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLE 384
Score = 108 (43.1 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G + R + D +TGS KG ++DF
Sbjct: 572 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNS 624
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 625 EEDAKAAKEAMEDGEIDGNKVTLDWAK 651
Score = 49 (22.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 385 TP-KKNVTDVKMVDAESGKKAAQTP 408
TP KK T K + A GKK A TP
Sbjct: 106 TPGKKGTTPGKALVATPGKKGAATP 130
Score = 48 (22.0 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 8 ATPTKSAKKGGKREAEDAIEK 28
ATP K AK G + ED+ E+
Sbjct: 128 ATPAKGAKNGKNAKKEDSDEE 148
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 175 (66.7 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 51/191 (26%), Positives = 92/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A
Sbjct: 134 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAD 192
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 193 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 242
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ SL+E F G+ + V +D +G KG ++ + + NKA+E M+G EI
Sbjct: 243 DDE----SLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 297
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 298 GKVIFVGRAQK 308
Score = 166 (63.5 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 53/207 (25%), Positives = 101/207 (48%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ ++ FS+ + + V++ D G+
Sbjct: 220 EAELGAKAKE--FT-------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS 270
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + + I + A+++ E ++ R
Sbjct: 271 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 330
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 331 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 383
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 384 EEATKAVTEMNGRIVGSKPLYVALAQR 410
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 174 (66.3 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 51/191 (26%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAD 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ SL+E F G+ + V +D G KG ++ + + NKA+E M+G EI
Sbjct: 203 DDE----SLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKIIFVGRAQK 268
Score = 166 (63.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 53/207 (25%), Positives = 102/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ ++ FS+ + + V++ D +G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + + I + A+++ E ++ R
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 174 (66.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 50/191 (26%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIDKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
GED L+E FG G + V D D G +G ++ F + KA++ M+G ++
Sbjct: 199 GEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLN 257
Query: 590 GYSLVVDEAKQ 600
G ++ V A++
Sbjct: 258 GKAIFVGRAQK 268
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 44/185 (23%), Positives = 90/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
+++ N ++ ++ +F + + V++ +D G+ +G+G V F EDA KA++ +N
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L +AI + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 174 (66.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 53/191 (27%), Positives = 90/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAEMGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L+E F G I V D D+G KG ++ F + +A+ EM+G E+
Sbjct: 199 GEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQVYVGRAQK 268
Score = 149 (57.5 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 49/207 (23%), Positives = 98/207 (47%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G +A + FT +++ N ++ ++ F + + +R+ +D G+
Sbjct: 180 EAEMGARAKE--FT-------NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKS 230
Query: 457 KGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGA-YTPYSGGNESNSFQKGGR 514
KG+G V F EDA +A+ E+NG+ + + + + A+++G T E + R
Sbjct: 231 KGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + +++K D + ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYVKNLDDGLDDERLR----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G + L V A++
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQR 370
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 174 (66.3 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 51/191 (26%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAD 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ SL+E F G+ + V +D G KG ++ + + NKA+E M+G EI
Sbjct: 203 DDE----SLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKIIFVGRAQK 268
Score = 166 (63.5 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 53/207 (25%), Positives = 102/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ ++ FS+ + + V++ D +G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + + I + A+++ E ++ R
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 173 (66.0 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 52/185 (28%), Positives = 85/185 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
L+V N+ Q F++ +V L DADG+ KG+G V + EDA KA+E LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGN-ESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
L + + A+++ E+ +K + Q + +F+K D SV +++
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN-LFVKNLDDSVDDEK-- 337
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEI-GGYSLVV 595
LEE F G IT V + + G KG ++ F+ + KA+ +I G L V
Sbjct: 338 --LEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 596 DEAKQ 600
A++
Sbjct: 395 AIAQR 399
Score = 162 (62.1 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 47/188 (25%), Positives = 94/188 (50%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
GS +F+ NL ++ + + FS +++ ++++D +G+ KG+G V F A +AI
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ LNG +L + I + P+ E +S + + + +++K +S ++
Sbjct: 184 DALNGMLLNGQEIYV---------APHLSRKERDSQLEETKAHYTN-LYVKNINSETTDE 233
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
Q +E F G I S+ KD D G +KG ++++ + KA+E ++ +E+ G
Sbjct: 234 Q----FQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK 288
Query: 593 LVVDEAKQ 600
L V A++
Sbjct: 289 LYVGRAQK 296
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 160 (61.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 53/180 (29%), Positives = 88/180 (48%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + V++RL S DG+ KG ++EF + DA K +E
Sbjct: 405 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK-DGKSKGIAYIEFKTEADAEKTLE 460
Query: 476 -LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
G + R+I L + E+G + GG NS G + T+ + S E+
Sbjct: 461 EKQGTEIDGRSISLYYTGEKGQNQDFRGGK--NSTWSG----ESKTLVLSNLAYSATEE- 513
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGT-EIGGYSL 593
+L+E F T I VP++ + G KG A+++F + +AL EI G ++
Sbjct: 514 ---TLQEVFEKA---TFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 566
Score = 146 (56.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 39/120 (32%), Positives = 62/120 (51%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 495 SGESKTLVLSNLAYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 551
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNS-FQKGGRGQAAHTIFIKGFDSSV 530
A+ N + + RAIRL+ RG+ P + S + F KG + + FD S+
Sbjct: 552 ALNSCNKREIEGRAIRLELQGPRGS--PNARSQPSKTLFVKGLSEETTEETLKESFDGSI 609
Score = 114 (45.2 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 387 KKNVTDVKMV-DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD 445
KK + K +A+ K A P T S LFVGNL FS ++++ S+V D
Sbjct: 294 KKEMAKQKAAPEAKKQKVEATEPTT-----SFNLFVGNLNFSKSASELKTGISDVFAKND 348
Query: 446 VRLSSDADGRFKGYGHVEFASVEDAHKAIELNG-QMLGNRAIRLD 489
+ + G + +G+V+F S ED KA+EL G ++ GN I+L+
Sbjct: 349 LAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLE 392
Score = 105 (42.0 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + E+ +L+E F G I R + D +TGS KG ++DF
Sbjct: 580 RSQPSKTLFVKG----LSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 632
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 633 EEDAKAAKEAMEDGEIDGNKVTLDWAK 659
Score = 52 (23.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 385 TP-KKNVTDVKMVDAESGKKAAQTP 408
TP KK T K + A SGKK A P
Sbjct: 106 TPGKKGATPAKALVATSGKKGAAAP 130
Score = 44 (20.5 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 23/96 (23%), Positives = 28/96 (29%)
Query: 82 KAVVTNKGGKAAKP-PVKXXXXXXXXXXXXXXPPKKQPVXXXXXXXXXXXXXS-KPXXXX 139
+ ++ K GK A P P K P KK V + P
Sbjct: 45 EVIIPQKKGKKATPTPAKKVMVSPTKKVAAATPAKKAVVTPGKKAAATPAKKTVTPAKAV 104
Query: 140 XX--XXXXXXXXXXVPTSIKK---LPVAAAKNGPSA 170
V TS KK P AKNG +A
Sbjct: 105 ATPGKKGATPAKALVATSGKKGAAAPAKGAKNGKNA 140
Score = 43 (20.2 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 8 ATPTKSAKKGGKREAEDAIEK 28
A P K AK G + ED+ E+
Sbjct: 128 AAPAKGAKNGKNAKKEDSDEE 148
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 170 (64.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 53/186 (28%), Positives = 94/186 (50%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF ++
Sbjct: 144 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 203
Query: 469 DAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ +LG I E+ + N+ QKG G +++
Sbjct: 204 SVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGSSGPMR--LYVGSLH 256
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGI--AYLDFTDADSFNKALE-MS 584
++ ED +R E G+++R +V ++G++K A+ F+D++ +ALE ++
Sbjct: 257 FNITEDMLRGIFEPF----GKVSR-NVQYTNESGTIKSNNRAHTKFSDSECARRALEQLN 311
Query: 585 GTEIGG 590
G E+ G
Sbjct: 312 GFELAG 317
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 172 (65.6 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 47/189 (24%), Positives = 97/189 (51%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G ++V NL +++ +Q+ FS+ + V++ D++G+ +G+G + F E+A KA+
Sbjct: 189 GFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAV 248
Query: 475 E-LNGQMLGNRAIRLDFARERGA-YTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGE 532
+ +NG+ + + + + A++R E ++ R Q + +++K D S+ +
Sbjct: 249 DHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVN-LYVKNLDDSIND 307
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
D+ L+E F + G IT V + + KG ++ F+ + KA+ EM+G +G
Sbjct: 308 DR----LKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 592 SLVVDEAKQ 600
L V A++
Sbjct: 362 PLYVALAQR 370
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 44/188 (23%), Positives = 85/188 (45%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G +F+ NL S++ + + FS ++ ++ + G +G+G V F + E A KAI
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAI 155
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+NG +L +R + + + R + + G R I++K + E
Sbjct: 156 NTMNGMLLNDRKVFVGHFKSR----------QKREAELGARALGFTNIYVKNLRVDMDEQ 205
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
L++ F G+ + V +D G +G +++F + KA++ M+G E+ G
Sbjct: 206 ----GLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQL 260
Query: 593 LVVDEAKQ 600
L V A++
Sbjct: 261 LYVGRAQK 268
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 170 (64.9 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 53/186 (28%), Positives = 94/186 (50%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR-FKGYGHVEFASVE 468
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF ++
Sbjct: 172 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 231
Query: 469 DAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ +LG I E+ + N+ QKG G +++
Sbjct: 232 SVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMA-----NNLQKGSSGPMR--LYVGSLH 284
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGI--AYLDFTDADSFNKALE-MS 584
++ ED +R E G+++R +V ++G++K A+ F+D++ +ALE ++
Sbjct: 285 FNITEDMLRGIFEPF----GKVSR-NVQYTNESGTIKSNNRAHTKFSDSECARRALEQLN 339
Query: 585 GTEIGG 590
G E+ G
Sbjct: 340 GFELAG 345
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 172 (65.6 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 50/191 (26%), Positives = 92/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAD 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ +L+E F G+ + V +D +G KG ++ + + NKA+E M+G EI
Sbjct: 203 DDE----NLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKVIFVGRAQK 268
Score = 167 (63.8 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 53/207 (25%), Positives = 102/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ +++ FS+ + + V++ D G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + + I + A+++ E ++ R
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 166 (63.5 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 50/183 (27%), Positives = 87/183 (47%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIEL 476
+T++V ++ SV + + FS +VVD R+ D + + + VEF+ + A A+ L
Sbjct: 128 RTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEFSDDQGARSALSL 186
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G M+G +R+ + A P + S + R + TI+ D + ED V
Sbjct: 187 GGTMIGYYPVRV--LPSKTAILPVNPTFLPRSEDE--REMCSRTIYCTNVDKNATEDDVN 242
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596
+ +CGE+TR+ + D S + IA+++F A+S AL SG +G + V
Sbjct: 243 TFFQS---ACGEVTRLRLLGD-QVHSTR-IAFVEFAMAESAVAALNCSGIVLGSQPIRVS 297
Query: 597 EAK 599
+K
Sbjct: 298 PSK 300
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 171 (65.3 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 50/184 (27%), Positives = 89/184 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
+F+ NL S++ + + FS ++ ++ D +G KGY V F + E A KAIE +N
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN 61
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
G +L +R + + + R + + G + + ++IK F V ++
Sbjct: 62 GMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEVDDE---- 107
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596
SL+E F G+ + V +D G KG ++ + + NKA+E M+G EI G + V
Sbjct: 108 SLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 166
Query: 597 EAKQ 600
A++
Sbjct: 167 RAQK 170
Score = 166 (63.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 53/207 (25%), Positives = 102/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ ++ FS+ + + V++ D +G+
Sbjct: 82 EAELGAKAKE--FT-------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS 132
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + + I + A+++ E ++ R
Sbjct: 133 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 192
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 193 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 245
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 246 EEATKAVTEMNGRIVGSKPLYVALAQR 272
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 172 (65.6 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 48/198 (24%), Positives = 98/198 (49%)
Query: 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF------KGYGHVE 463
TPQ S+ ++VGN+P + +++ FF+ ++ F K + +E
Sbjct: 261 TPQKKQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFCQINAPKCFAFIE 320
Query: 464 FASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNES--NSFQKGGRGQAAHTI 521
F S E+A A+ +G L N +++ ++ + + +GGN S S + + I
Sbjct: 321 FRSPEEATNAMRFDGISLKNFTLKIRRPKDYQSTSDNTGGNASLLPSIVPTNVPDSENKI 380
Query: 522 FIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL 581
++ G S++ E+QV++ L + G++ ++ KD +TG KG A+ ++ D++ + A
Sbjct: 381 YVGGLPSNLSEEQVKSLLSAY----GKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVAC 436
Query: 582 -EMSGTEIGGYSLVVDEA 598
+++G + +LVV A
Sbjct: 437 SKLNGIPLADKTLVVQRA 454
>TAIR|locus:2099488 [details] [associations]
symbol:AT3G48840 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00533441 RefSeq:NP_190453.4 UniGene:At.53840
ProteinModelPortal:F4JF59 SMR:F4JF59 EnsemblPlants:AT3G48840.1
GeneID:824045 KEGG:ath:AT3G48840 Uniprot:F4JF59
Length = 189
Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 38/77 (49%), Positives = 45/77 (58%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKA-IE 475
KTLF+ NLP E + NFF +V EVV VRL D G+ G G VEFAS A KA +E
Sbjct: 40 KTLFIANLPLKSEMPHIINFFRDVGEVVSVRLIVDHRGKHVGCGFVEFASAYKAKKAPLE 99
Query: 476 L-NGQMLGNRAIRLDFA 491
N + L NR + LD A
Sbjct: 100 KKNLRRLRNRYVVLDVA 116
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/191 (25%), Positives = 90/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D G +GYG V F + E A+
Sbjct: 94 RKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETQEAAN 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L +R + + + R + G + ++IK F
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSR----------RERELEYGAKVMEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L E F + G + V D DTG +G ++++ + + KA+ EM+G E+
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GRMIYVGRAQK 268
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/185 (24%), Positives = 88/185 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ ++ FS + V++ D GR +G+G V + + E+A KA+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + R I + A++R E ++ R Q + +++K D + +D++R
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN-LYVKNLDDGIDDDRLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 167 (63.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 51/184 (27%), Positives = 86/184 (46%)
Query: 414 GGSKTLFVGNL-PFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAH 471
G T+FVG+L P + + F + + V ++ +D GR KGYG V FA +
Sbjct: 170 GPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQI 229
Query: 472 KAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+A+ E+NGQ +R +R A + T ++ G TIF+ D SV
Sbjct: 230 RAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSV 289
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
ED +++ FG GE+ + +P G K ++ + + +AL ++GT++G
Sbjct: 290 TEDDLKSV----FGQFGELVHVKIP----AG--KRCGFVQYANRACAEQALSVLNGTQLG 339
Query: 590 GYSL 593
G S+
Sbjct: 340 GQSI 343
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/191 (25%), Positives = 92/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + + A
Sbjct: 95 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQDAAD 153
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G + + ++IK F
Sbjct: 154 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAEMGAKAKEFTNVYIKNF---- 199
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
G+D L+E F G+ + V D TG +G ++ + + NKA+E M+GTE+
Sbjct: 200 GDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEMNGTELN 258
Query: 590 GYSLVVDEAKQ 600
G ++ V A++
Sbjct: 259 GKTVFVGRAQK 269
Score = 154 (59.3 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 50/207 (24%), Positives = 100/207 (48%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N ++ ++ F + + + V++ +D G+
Sbjct: 181 EAEMGAKAKE--FT-------NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS 231
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
+G+G V + EDA+KA+E +NG L + + + A+++ E ++ R
Sbjct: 232 RGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISR 291
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 292 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSP 344
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 345 EEATKAVTEMNGRIVGSKPLYVALAQR 371
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 50/191 (26%), Positives = 90/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +FV NL S++ + + FS ++ ++ D +G KGYG V F + E+A
Sbjct: 94 RKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEEAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG L +R + + + R + G R + ++IK ++
Sbjct: 153 RAIEKMNGMFLNDRKVFVGRFKSR----------RDRQAELGARAKEFTNVYIK----NL 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ F G + V D ++G KG ++ F + KA+ EM+G ++
Sbjct: 199 GEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 146 (56.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 50/195 (25%), Positives = 91/195 (46%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ NL ++ +Q+ FS + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 478 GQMLGNRAIRLDFAR---ERGAYTPYSGGN--------ESNSFQKGGRGQAAHTIFIKGF 526
G+ L + I + A+ ER + G E + R Q + +++K
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVN-LYVKNL 311
Query: 527 DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSG 585
D + ++++R + F G IT V + G KG ++ F+ + KA+ EM+G
Sbjct: 312 DDGIDDERLR----KEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 586 TEIGGYSLVVDEAKQ 600
+ L V A++
Sbjct: 366 RIVATKPLYVALAQR 380
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 50/191 (26%), Positives = 92/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + E A
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAAD 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
KAIE +NG +L +R + + + R + + G + + ++IK F V
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
++ +L+E F G+ + V +D +G KG ++ + + NKA+E M+G EI
Sbjct: 203 DDE----NLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEIT 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKVIFVGRAQK 268
Score = 165 (63.1 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 53/207 (25%), Positives = 102/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ +++ FS+ + + V++ D G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V + EDA+KA+E +NG+ + + I + A+++ E ++ R
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 172 (65.6 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 56/196 (28%), Positives = 97/196 (49%)
Query: 410 TPQSGG---SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFAS 466
TP+SG + L+V N+ F V + DV+ FF + +V VR+ + + KG+G+V +
Sbjct: 747 TPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN-QHKGFGYVVMTT 805
Query: 467 VEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYS-GGNESNSFQKGGRGQAAHTIFI-- 523
+DA A+ G+ LGNR + + ++ R + N++ + K ++ +
Sbjct: 806 NQDAENALSAAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPK 865
Query: 524 KGFDS----SVGEDQV-----RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
K F+ S+G V A L F S G++ R+ + +++ G+V + +LD DA
Sbjct: 866 KSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHE-GAV--VEFLDIHDA 922
Query: 575 DSFNKALEMSGTEIGG 590
+ ALE G EIGG
Sbjct: 923 GKASLALE--GHEIGG 936
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 108 (43.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 117 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 172
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 173 LESRYHQIG 181
Score = 100 (40.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 32 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 91
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 92 EHKLDGKLI 100
>MGI|MGI:1341822 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0019953 "sexual
reproduction" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1341822 GO:GO:0048471
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048589 GO:GO:0003743
GO:GO:0019953 eggNOG:COG0724 EMBL:AF289664
GeneTree:ENSGT00530000063406 CTD:7458 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OMA:PRTVSEP OrthoDB:EOG46DM3S ChiTaRS:EIF4H
EMBL:AF139987 EMBL:BC014796 IPI:IPI00124742 IPI:IPI00222560
RefSeq:NP_291039.1 UniGene:Mm.27955 PDB:2DNG PDBsum:2DNG
ProteinModelPortal:Q9WUK2 SMR:Q9WUK2 STRING:Q9WUK2
PhosphoSite:Q9WUK2 PaxDb:Q9WUK2 PRIDE:Q9WUK2
Ensembl:ENSMUST00000036125 GeneID:22384 KEGG:mmu:22384
InParanoid:Q9WUK2 EvolutionaryTrace:Q9WUK2 NextBio:302749
PMAP-CutDB:Q9WUK2 Bgee:Q9WUK2 CleanEx:MM_EIF4H
Genevestigator:Q9WUK2 GermOnline:ENSMUSG00000040731 Uniprot:Q9WUK2
Length = 248
Score = 159 (61.0 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 52/158 (32%), Positives = 76/158 (48%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG---RGQAAHTIFIKGFDSSVGED 533
+G +LG+R++R+D A R GG F+KGG RG G+DS D
Sbjct: 102 DGALLGDRSLRVDIAEGR---KQDKGGF---GFRKGGPDDRGMGGSRESRGGWDS---RD 152
Query: 534 QVRASLEEHF-GSCGEITRISVPKDYDTGSVKGIAYLD 570
+ + F G G S P D G G + D
Sbjct: 153 DFNSGYRDDFLGGRGG----SRPGDRRAGPPMGSRFRD 186
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 164 (62.8 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +FV NL S+ + + S ++ + D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L R + + + R + + G R + ++IK F
Sbjct: 153 RAIKKMNGMLLNGRKVFVGQFKSR----------KEREAELGARAKEFPNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 42/181 (23%), Positives = 84/181 (46%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G +A + P +++ N ++ +++ F + + V++ +D G+
Sbjct: 180 EAELGARAKEFP---------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 230
Query: 457 KGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V F EDA KA+ E+NG+ L + I + A+++ T E + R
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + +++K D + ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQVVN-LYVKNLDDGIDDERLRKA----FSPFGTITSAKVMME--GGRSKGFGFVCFSSP 343
Query: 575 D 575
+
Sbjct: 344 E 344
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 108 (43.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 116 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 171
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 172 LESRYHQIG 180
Score = 99 (39.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 91 EHKLDGKLI 99
>UNIPROTKB|E1BZH4 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0048589 "developmental
growth" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
OMA:PRTVSEP EMBL:AADN02026007 IPI:IPI00604206 RefSeq:XP_003642445.1
Ensembl:ENSGALT00000001998 GeneID:100859865 KEGG:gga:100859865
Uniprot:E1BZH4
Length = 254
Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 36/102 (35%), Positives = 59/102 (57%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ V VRL D + +FKG+ +VEF VE +A+
Sbjct: 41 TAYVGNLPFNTVQGDIDAIFKDLS-VRSVRLVRDKETDKFKGFCYVEFDEVESLKEALTY 99
Query: 477 NGQMLGNRAIRLDFA----RERGAYTPYSGGNESNSFQKGGR 514
+G +LG+R++R+D A +++G + GG + G R
Sbjct: 100 DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGMGGGSR 141
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 168 (64.2 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 49/185 (26%), Positives = 93/185 (50%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
++V NL V++ +Q+ FS+ +++ V++ D G +G+G V F EDA KA+ ++N
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + R + + A++R E + R Q + +++K D S+ ++++R
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN-LYVKNLDDSIDDEKLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G +G L V
Sbjct: 312 ----KEFAPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
Score = 151 (58.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 47/191 (24%), Positives = 87/191 (45%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D G +G+G V F + E A
Sbjct: 94 RKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQ 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
AI +NG +L +R + + + R + G R I++K V
Sbjct: 153 NAIRTMNGMLLNDRKVFVGHFKSR----------REREAELGARALEFTNIYVKNLHVDV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
E L++ F G+I + V +D D+G +G +++F + KA+ +M+G E+
Sbjct: 203 DE----RCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVS 257
Query: 590 GYSLVVDEAKQ 600
G L V A++
Sbjct: 258 GRLLYVGRAQK 268
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 165 (63.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 48/184 (26%), Positives = 88/184 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
++V NL + AD++ F E E+ + D +G+ + +G V F E A AIE +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 478 GQMLGNRAIRLDFARERGAYTP-YSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G ++ + + + A+ + T E + + + +++K D SV D +
Sbjct: 181 GVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSV--DNTK 238
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA-LEMSGTEIGGYSLVV 595
LEE F G IT V + G KG+ +++F+ ++ +KA L+M+G +G + V
Sbjct: 239 --LEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Query: 596 DEAK 599
A+
Sbjct: 296 SLAQ 299
Score = 101 (40.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G +FV NL S++ + + FS +V+ +++ DA G KGYG V+F S + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTAC 88
Query: 475 EL-NGQMLGNRAIRL 488
NG ++ N+ I +
Sbjct: 89 NFHNGTLIRNQHIHV 103
Score = 76 (31.8 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 514 RGQAAHT-IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572
RGQ + +F + ++ E A L+ FG GEIT V KD + G + +++F
Sbjct: 109 RGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFE 167
Query: 573 DADSFNKALE-MSGTEIGGYSLVVDEAKQ 600
A++ A+E M+G + L V A++
Sbjct: 168 KAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
>POMBASE|SPAC3G6.04 [details] [associations]
symbol:rnp24 "RNA-binding protein Rnp24" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC3G6.04 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 HOGENOM:HOG000193653
OrthoDB:EOG47DDRF EMBL:U24430 EMBL:AB027862 PIR:T38723
RefSeq:NP_594970.1 ProteinModelPortal:Q09100 STRING:Q09100
EnsemblFungi:SPAC3G6.04.1 GeneID:2542965 KEGG:spo:SPAC3G6.04
NextBio:20804000 Uniprot:Q09100
Length = 369
Score = 148 (57.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 44/161 (27%), Positives = 83/161 (51%)
Query: 428 VEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK-AIELNGQMLGNRAI 486
V + +++ +E + + +S + + KG+ +V+FA+ EDA K A++ + + L R I
Sbjct: 136 VSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFAT-EDALKLALQCSEKALNGRNI 194
Query: 487 RL----DFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEH 542
+ DF+ P + +++ S Q + + + +F+ D + A L+EH
Sbjct: 195 LIKSNTDFSGRPSK--PANTLSKTASIQSSKK-EPSSILFVGNLDFETTD----ADLKEH 247
Query: 543 FGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEM 583
FG G+I R+ + DTG KG ++DF D D+ KA+E+
Sbjct: 248 FGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMEL 288
Score = 132 (51.5 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI 474
S LFVGNL F AD++ F +V ++ VRL + D G+ KG+G V+F ++ KA+
Sbjct: 227 SSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
Query: 475 ELNGQMLGNRAIRLDFARER 494
EL G+ + RL++ +R
Sbjct: 287 EL-----GHNSWRLEYGEDR 301
Score = 57 (25.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 22/95 (23%), Positives = 37/95 (38%)
Query: 351 KDVKPNTKALKKXXXXXXXXXXXXXXXXXXXXXKTPKKNVTDVKMVDAESGKKAAQTPFT 410
K V P+ K ++K K KK +K +DA+ G+K
Sbjct: 41 KPVPPSKKLMRKLRKAGKIDKDGNWTPEALEEAK--KKEEKRLKRLDAKYGRKEEGESQE 98
Query: 411 PQSGGSKTLFVGNLPFSVEQADVQNFF-SEVAEVV 444
++VGNL F + + +FF E +E++
Sbjct: 99 ESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMI 133
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 108 (43.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 153 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 208
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 209 LESRYHQIG 217
Score = 100 (40.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 68 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 127
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 128 EHKLDGKLI 136
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 169 (64.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 52/185 (28%), Positives = 87/185 (47%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE 475
T+ V NL ++ D+ FFSEVA +V D++ D G+ KG +VEF + E KA+
Sbjct: 488 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALA 547
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
NG ML NR I++ + + + ++ Q ++I G + +
Sbjct: 548 ANGMMLKNRPIKI-----QSSQAEKNRAAKAAKHQPIDPNDIPLKLYIGGLLGPLS-NIT 601
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594
L++ F G+I + + +D TG KG ++ F A +AL M+G E+ G +
Sbjct: 602 EQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIK 661
Query: 595 VDEAK 599
V A+
Sbjct: 662 VGYAQ 666
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 169 (64.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 52/185 (28%), Positives = 87/185 (47%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE 475
T+ V NL ++ D+ FFSEVA +V D++ D G+ KG +VEF + E KA+
Sbjct: 488 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALA 547
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
NG ML NR I++ + + + ++ Q ++I G + +
Sbjct: 548 ANGMMLKNRPIKI-----QSSQAEKNRAAKAAKHQPIDPNDIPLKLYIGGLLGPLS-NIT 601
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594
L++ F G+I + + +D TG KG ++ F A +AL M+G E+ G +
Sbjct: 602 EQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIK 661
Query: 595 VDEAK 599
V A+
Sbjct: 662 VGYAQ 666
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 167 (63.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 50/191 (26%), Positives = 90/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGY V F + + A
Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQDAAD 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G + + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGAKAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589
G+D L+E F G+ + V D TG KG ++ F + NKA+E M+G +I
Sbjct: 199 GDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKDIN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKMVFVGRAQK 268
Score = 161 (61.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 52/207 (25%), Positives = 102/207 (49%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N ++ ++ FS+ + + V++ +D G+
Sbjct: 180 EAELGAKAKE--FT-------NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS 230
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V F EDA+KA+E +NG+ + + + + A+++ E ++ R
Sbjct: 231 KGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + ++IK D ++ ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQGVN-LYIKNLDDTIDDEKLR----KEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G +G L V A++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQR 370
>UNIPROTKB|F8VYE9 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021378
ProteinModelPortal:F8VYE9 SMR:F8VYE9 Ensembl:ENST00000550390
ArrayExpress:F8VYE9 Bgee:F8VYE9 Uniprot:F8VYE9
Length = 185
Score = 143 (55.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG--RFKGYGHVEFASVEDAHKAIE 475
T F+GNLP+ V + ++ FF + + VRL + R KG+G+ EF ++ A+
Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGL-NISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 155
Query: 476 LNGQMLGNRAIRLDFA---RERGAYTPY 500
LN + LGNR IR+D A +++G PY
Sbjct: 156 LNEESLGNRRIRVDVADQAQDKGTPGPY 183
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 143 (55.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 50/178 (28%), Positives = 82/178 (46%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQAAHTIFIKGFDSS 529
NG+ + R IR+D A R RG Y GG+ F +GGRG+ +GF
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSSGGRGFFRGGRGRG------RGFSRG 117
Query: 530 VGEDQVRAS-LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGT 586
G+ S E G G +DY + +G +Y D + S+ + + T
Sbjct: 118 GGDRGYGGSRFESRSGGYGG------SRDYYSSRSQGGSYGDRSSGGSYRDSYDSYAT 169
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 167 (63.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 51/191 (26%), Positives = 95/191 (49%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G+ +F+ NL +++ + + FS +++ +++ D G KGYG V F SVE A+ AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 475 E-LNGQMLGNRAIRLDF---ARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
E +NG +L ++ + + RER + N +N ++IK D+ +
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTN-------------VYIKNLDTEI 272
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
E + + FG GEIT +S+ KD + +G ++++ + + KA+ E++ E
Sbjct: 273 TEQE----FSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYK 327
Query: 590 GYSLVVDEAKQ 600
G L V A++
Sbjct: 328 GKKLYVGRAQK 338
Score = 146 (56.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 44/185 (23%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ NL + + + + F + E+ + L D + + +G+G V +A+ E A KA+ ELN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGN-ESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
+ + + + A+++ E +K + Q + +FIK V +++++
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN-LFIKNLQDEVDDERLK 381
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
A F + G IT + D + G KG ++ +T + NKA+ EM+ + G L V
Sbjct: 382 AE----FSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Query: 596 DEAKQ 600
A++
Sbjct: 437 ALAQR 441
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 146 (56.5 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 538
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 539 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 584
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 585 EETLKESFD 593
Score = 143 (55.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 56/180 (31%), Positives = 84/180 (46%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + AE+ RL S DG+ KG ++EF + DA K E
Sbjct: 392 ARTLLAKNLPYKVTQDELKEVFEDAAEI---RLVSK-DGKSKGIAYIEFKTEADAEKTFE 447
Query: 476 -LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
G + R+I L + E+G Y GG NS G + T+ + S E+
Sbjct: 448 EKQGTEIDGRSISLYYTGEKGQNQDYRGGK--NSTWSG----ESKTLVLSNLSYSATEE- 500
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGS--VKGIAYLDFTDA----DSFNKALEMSGTEI 588
+L+E F T I VP++ + S I + F DA +S NK E+ G I
Sbjct: 501 ---TLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR-EIEGRAI 553
Score = 108 (43.1 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G + R + D +TGS KG ++DF
Sbjct: 567 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNS 619
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 620 EEDAKAAKEAMEDGEIDGNKVTLDWAK 646
Score = 105 (42.0 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG 478
LFVGNL F+ +++ S+V D+ + G + +G+V+F S ED KA+EL G
Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTG 368
Query: 479 -QMLGNRAIRLD 489
++ GN I+L+
Sbjct: 369 LKVFGNE-IKLE 379
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF-TDADS 576
A T+ K V +D+ L+E F EI +S KD G KGIAY++F T+AD+
Sbjct: 392 ARTLLAKNLPYKVTQDE----LKEVFEDAAEIRLVS--KD---GKSKGIAYIEFKTEADA 442
Query: 577 FNKALEMSGTEIGGYSL 593
E GTEI G S+
Sbjct: 443 EKTFEEKQGTEIDGRSI 459
Score = 43 (20.2 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 385 TP-KKNVTDVKMVDAESGKKAAQTP 408
TP KK T K + A GKK A P
Sbjct: 106 TPGKKGATPGKALVATPGKKGAAIP 130
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 8 ATPTKSAKKGGKREAEDAIEK 28
A P K AK G + ED+ E+
Sbjct: 128 AIPAKGAKNGKNAKKEDSDEE 148
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 385 TPKKNV---TDVKMVDAESGKKAAQTP 408
+P K V T K GKKAA TP
Sbjct: 67 SPTKKVAVATPAKKAAVTPGKKAAATP 93
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 146 (56.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 483 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 539
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 540 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 585
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 586 EETLKESFD 594
Score = 143 (55.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 56/180 (31%), Positives = 84/180 (46%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + AE+ RL S DG+ KG ++EF + DA K E
Sbjct: 393 ARTLLAKNLPYKVTQDELKEVFEDAAEI---RLVSK-DGKSKGIAYIEFKTEADAEKTFE 448
Query: 476 -LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
G + R+I L + E+G Y GG NS G + T+ + S E+
Sbjct: 449 EKQGTEIDGRSISLYYTGEKGQNQDYRGGK--NSTWSG----ESKTLVLSNLSYSATEE- 501
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGS--VKGIAYLDFTDA----DSFNKALEMSGTEI 588
+L+E F T I VP++ + S I + F DA +S NK E+ G I
Sbjct: 502 ---TLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR-EIEGRAI 554
Score = 108 (43.1 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G + R + D +TGS KG ++DF
Sbjct: 568 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNS 620
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 621 EEDAKAAKEAMEDGEIDGNKVTLDWAK 647
Score = 105 (42.0 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG 478
LFVGNL F+ +++ S+V D+ + G + +G+V+F S ED KA+EL G
Sbjct: 310 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTG 369
Query: 479 -QMLGNRAIRLD 489
++ GN I+L+
Sbjct: 370 LKVFGNE-IKLE 380
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF-TDADS 576
A T+ K V +D+ L+E F EI +S KD G KGIAY++F T+AD+
Sbjct: 393 ARTLLAKNLPYKVTQDE----LKEVFEDAAEIRLVS--KD---GKSKGIAYIEFKTEADA 443
Query: 577 FNKALEMSGTEIGGYSL 593
E GTEI G S+
Sbjct: 444 EKTFEEKQGTEIDGRSI 460
Score = 43 (20.2 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 385 TP-KKNVTDVKMVDAESGKKAAQTP 408
TP KK T K + A GKK A P
Sbjct: 106 TPGKKGATPGKALVATPGKKGAAIP 130
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 8 ATPTKSAKKGGKREAEDAIEK 28
A P K AK G + ED+ E+
Sbjct: 128 AIPAKGAKNGKNAKKEDSDEE 148
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 385 TPKKNV---TDVKMVDAESGKKAAQTP 408
+P K V T K GKKAA TP
Sbjct: 67 SPTKKVAVATPAKKAAVTPGKKAAATP 93
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 146 (56.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 484 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 540
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531
A+ N + + RAIRL+ RG+ P R Q + T+F+KG
Sbjct: 541 ALNSCNKREIEGRAIRLELQGPRGS--P------------NARSQPSKTLFVKGLSEDTT 586
Query: 532 EDQVRASLE 540
E+ ++ S +
Sbjct: 587 EETLKESFD 595
Score = 143 (55.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 56/180 (31%), Positives = 84/180 (46%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + AE+ RL S DG+ KG ++EF + DA K E
Sbjct: 394 ARTLLAKNLPYKVTQDELKEVFEDAAEI---RLVSK-DGKSKGIAYIEFKTEADAEKTFE 449
Query: 476 -LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
G + R+I L + E+G Y GG NS G + T+ + S E+
Sbjct: 450 EKQGTEIDGRSISLYYTGEKGQNQDYRGGK--NSTWSG----ESKTLVLSNLSYSATEE- 502
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGS--VKGIAYLDFTDA----DSFNKALEMSGTEI 588
+L+E F T I VP++ + S I + F DA +S NK E+ G I
Sbjct: 503 ---TLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR-EIEGRAI 555
Score = 108 (43.1 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + ED +L+E F G + R + D +TGS KG ++DF
Sbjct: 569 RSQPSKTLFVKG----LSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNS 621
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 622 EEDAKAAKEAMEDGEIDGNKVTLDWAK 648
Score = 105 (42.0 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG 478
LFVGNL F+ +++ S+V D+ + G + +G+V+F S ED KA+EL G
Sbjct: 311 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTG 370
Query: 479 -QMLGNRAIRLD 489
++ GN I+L+
Sbjct: 371 LKVFGNE-IKLE 381
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF-TDADS 576
A T+ K V +D+ L+E F EI +S KD G KGIAY++F T+AD+
Sbjct: 394 ARTLLAKNLPYKVTQDE----LKEVFEDAAEIRLVS--KD---GKSKGIAYIEFKTEADA 444
Query: 577 FNKALEMSGTEIGGYSL 593
E GTEI G S+
Sbjct: 445 EKTFEEKQGTEIDGRSI 461
Score = 43 (20.2 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 385 TP-KKNVTDVKMVDAESGKKAAQTP 408
TP KK T K + A GKK A P
Sbjct: 106 TPGKKGATPGKALVATPGKKGAAIP 130
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 8 ATPTKSAKKGGKREAEDAIEK 28
A P K AK G + ED+ E+
Sbjct: 128 AIPAKGAKNGKNAKKEDSDEE 148
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 385 TPKKNV---TDVKMVDAESGKKAAQTP 408
+P K V T K GKKAA TP
Sbjct: 67 SPTKKVAVATPAKKAAVTPGKKAAATP 93
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 142 (55.0 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 50/177 (28%), Positives = 81/177 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQAAHTIFIKGFDSS 529
NG+ + R IR+D A R RG Y GG+ F +GGRG+ +GF
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGRG------RGFSRG 117
Query: 530 VGEDQVRAS-LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSG 585
G+ S E G G +DY + +G Y D + S+ + + G
Sbjct: 118 GGDRGYGGSRFESRSGGYGG------SRDYYSSRSQGGGYGDRSSGGSYRDSYDSYG 168
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 159 (61.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI 474
S +FVG + +S ++ ++ FS+ EVVD ++ D + GR +G+ V F S E+A A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 475 ELNGQMLGNRAIRLDFARERGA 496
+L+GQ L R IR+++A ERG+
Sbjct: 93 QLDGQDLHGRRIRVNYATERGS 114
>RGD|1359222 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA;ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 156 (60.0 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 51/157 (32%), Positives = 76/157 (48%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG---RGQAAHTIFIKGFDSSVGED 533
+G +LG+R++R+D A R GG F+KGG RG G+DS +D
Sbjct: 102 DGALLGDRSLRVDIAEGR---KQDKGGF---GFRKGGPDDRGMGGSREPRGGWDSR--DD 153
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
++ G G S P D G G + D
Sbjct: 154 FSSGYRDDFLGGRGG----SRPGDRRAGPPMGSRFRD 186
>UNIPROTKB|Q5XI72 [details] [associations]
symbol:Eif4h "Eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0048589 "developmental growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 156 (60.0 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 51/157 (32%), Positives = 76/157 (48%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ + VRL D D +FKG+ +VEF V+ +A+
Sbjct: 43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG---RGQAAHTIFIKGFDSSVGED 533
+G +LG+R++R+D A R GG F+KGG RG G+DS +D
Sbjct: 102 DGALLGDRSLRVDIAEGR---KQDKGGF---GFRKGGPDDRGMGGSREPRGGWDSR--DD 153
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
++ G G S P D G G + D
Sbjct: 154 FSSGYRDDFLGGRGG----SRPGDRRAGPPMGSRFRD 186
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 166 (63.5 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 54/212 (25%), Positives = 102/212 (48%)
Query: 391 TDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSS 450
T + + ++ P + +T+FV L ++ + D+ + FS+ V++VRL +
Sbjct: 240 TSTPPTSSSTTSSSSTLPEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLIT 299
Query: 451 D-ADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
D R KG G+VEF+ E KAI L+G +L + I + + P +SNS
Sbjct: 300 DKVTKRMKGVGYVEFSQKEMVDKAIALSGSVLDGQQILVH------SIQPEKKVIKSNST 353
Query: 510 QKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYL 569
G G++ I++ SV E+Q+R + + G+I I++ + + A++
Sbjct: 354 GSSG-GESR--IYVGYIHLSVAEEQIRVIFQPY----GDIDFINI---HTKPGISKYAFI 403
Query: 570 DFTDADSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
F +S +A+ E++G E+ G +L ++ Q
Sbjct: 404 QFKTQESAKRAITELNGYELMGKNLKLNMVSQ 435
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 165 (63.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 48/191 (25%), Positives = 90/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D G +GYG V F + E A+
Sbjct: 94 RKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAAN 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L +R + + + R + G + ++IK F
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSR----------RERELEYGAKVMEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L E F + G + V D D+G +G ++++ + + KA+ EM+G E+
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GRMIYVGRAQK 268
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ ++ FS + V++ D GR +G+G V + + E+A KA+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + R I + A++R + E ++ R Q + +++K D + +D++R
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN-LYVKNLDDGIDDDRLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 165 (63.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 50/191 (26%), Positives = 89/191 (46%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G R + ++IK F
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSR----------KEREAELGARAKEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ F G I V D + G +G ++ F + +A+ EM+G E+
Sbjct: 199 GEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKLIYVGRAQK 268
Score = 152 (58.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 44/185 (23%), Positives = 91/185 (49%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ FS+ + +R+ +D +G+ +G+G V F EDA +A+ E+N
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 253 GKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVN-LYVKNLDDGIDDERLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V D G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 141 (54.7 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 50/178 (28%), Positives = 81/178 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQAAHTIFIKGFDSS 529
NG+ + R IR+D A R RG Y GG+ F +GGRG+ +GF
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGRG------RGFSRG 117
Query: 530 VGEDQVRAS-LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGT 586
G+ S E G G +DY + +G Y D + S+ + + T
Sbjct: 118 GGDRGYGGSRFESRSGGYGG------SRDYYSSRSQGGGYGDRSSGGSYRDSYDSYAT 169
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 141 (54.7 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 420 FVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-LN 477
FVG L ++ + +QN FS+ +V+D ++ +D + GR +G+G V FAS E +AIE +N
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 478 GQMLGNRAIRLDFARER----GAYTPYSGGNESNSFQKGGRG 515
GQ L R I ++ A+ R G GG ++GG G
Sbjct: 69 GQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGG 110
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 141 (54.7 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAI 474
S LF+G L +SV++ +++ FS EV +VR++ D GR +G+G V+FA DA A
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 475 E-LNGQMLGNRAIRLDFARER 494
+ ++G+ L R +R+ FA ER
Sbjct: 100 DAMDGKGLLGRPLRISFALER 120
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 164 (62.8 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 49/185 (26%), Positives = 91/185 (49%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
++V NLP V++ +Q+ FS+ +++ V++ D G + +G V F E+A KA+ +N
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + R + A++R E + R Q + +++K D S+ +D++R
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN-LYVKNLDDSIDDDKLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G +G L V
Sbjct: 312 ----KEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
Score = 136 (52.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 43/191 (22%), Positives = 86/191 (45%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ +++ D G +G+G V F + E A
Sbjct: 94 RKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQ 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI +NG +L +R + + + R + G R I++K V
Sbjct: 153 QAINTMNGMLLNDRKVFVGHFKSR----------REREAELGARALEFTNIYVKNLPVDV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
E L++ F G++ + V +D ++G + +++F + KA+ M+G E+
Sbjct: 203 DEQ----GLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVS 257
Query: 590 GYSLVVDEAKQ 600
G L A++
Sbjct: 258 GRLLYAGRAQK 268
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 108 (43.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 235 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 291 LESRYHQIG 299
Score = 99 (39.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 210 EHKLDGKLI 218
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 108 (43.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 235 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 291 LESRYHQIG 299
Score = 99 (39.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 210 EHKLDGKLI 218
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 108 (43.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD + K
Sbjct: 235 VFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 581 LEMSGTEIG 589
LE +IG
Sbjct: 291 LESRYHQIG 299
Score = 99 (39.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 210 EHKLDGKLI 218
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 160 (61.4 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 53/180 (29%), Positives = 88/180 (48%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475
++TL NLP+ V Q +++ F + V++RL S DG+ KG ++EF + DA K +E
Sbjct: 46 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK-DGKSKGIAYIEFKTEADAEKTLE 101
Query: 476 -LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQ 534
G + R+I L + E+G + GG NS G + T+ + S E+
Sbjct: 102 EKQGTEIDGRSISLYYTGEKGQNQDFRGGK--NSTWSG----ESKTLVLSNLAYSATEE- 154
Query: 535 VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGT-EIGGYSL 593
+L+E F T I VP++ + G KG A+++F + +AL EI G ++
Sbjct: 155 ---TLQEVFEKA---TFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 207
Score = 146 (56.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 39/120 (32%), Positives = 62/120 (51%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHK 472
SG SKTL + NL +S + +Q F + + ++ + +G+ KGY +EFAS EDA +
Sbjct: 136 SGESKTLVLSNLAYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKE 192
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNS-FQKGGRGQAAHTIFIKGFDSSV 530
A+ N + + RAIRL+ RG+ P + S + F KG + + FD S+
Sbjct: 193 ALNSCNKREIEGRAIRLELQGPRGS--PNARSQPSKTLFVKGLSEETTEETLKESFDGSI 250
Score = 105 (42.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573
R Q + T+F+KG + E+ +L+E F G I R + D +TGS KG ++DF
Sbjct: 221 RSQPSKTLFVKG----LSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 273
Query: 574 ADSFNKALE-MSGTEIGGYSLVVDEAK 599
+ A E M EI G + +D AK
Sbjct: 274 EEDAKAAKEAMEDGEIDGNKVTLDWAK 300
Score = 70 (29.7 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 459 YGHVEFASVEDAHKAIELNG-QMLGNRAIRLD 489
+G+V+F S ED KA+EL G ++ GN I+L+
Sbjct: 3 FGYVDFESAEDLEKALELTGLKVFGNE-IKLE 33
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 164 (62.8 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +FV NL S+ + + S ++ + D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L R + + + R + + G R + ++IK F
Sbjct: 153 RAIKKMNGMLLNGRKVFVGQFKSR----------KEREAELGARAKEFPNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E+
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GKQIYVGRAQK 268
Score = 147 (56.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 50/207 (24%), Positives = 97/207 (46%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G +A + P +++ N ++ +++ F + + V++ +D G+
Sbjct: 180 EAELGARAKEFP---------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 230
Query: 457 KGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
KG+G V F EDA KA+ E+NG+ L + I + A+++ T E + R
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + +++K D + ++++R + F G IT V + G KG ++ F+
Sbjct: 291 YQVVN-LYVKNLDDGIDDERLRKA----FSPFGTITSAKVMME--GGRSKGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G + L V A++
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQR 370
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 140 (54.3 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 420 FVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-LN 477
FVG L ++ D+Q FS+ +V+D ++ +D + GR +G+G V F + AIE +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 478 GQMLGNRAIRLDFARERGAYTPYSG-GNESNSFQKGGRG 515
G+ L R I ++ A+ RG+ G G ++ GG G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGG 107
>TAIR|locus:2030160 [details] [associations]
symbol:AT1G72800 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010926 EMBL:BT000952
IPI:IPI00547783 PIR:H96752 RefSeq:NP_565046.1 UniGene:At.26565
ProteinModelPortal:Q9CAJ2 SMR:Q9CAJ2 DNASU:843611
EnsemblPlants:AT1G72800.1 GeneID:843611 KEGG:ath:AT1G72800
TAIR:At1g72800 eggNOG:NOG267748 HOGENOM:HOG000152241 OMA:FSAGFKP
PhylomeDB:Q9CAJ2 ProtClustDB:CLSN2917434 ArrayExpress:Q9CAJ2
Genevestigator:Q9CAJ2 Uniprot:Q9CAJ2
Length = 335
Score = 159 (61.0 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
G + + GFD+S+ D ++++L ++F S GEITR+ VP + TG G AY+D +
Sbjct: 230 GVNGRSFSVTGFDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEG 289
Query: 575 DSFNKALEMSGTEIGGYSLVVDEAK 599
KALE+ ++GG+ LVV +A+
Sbjct: 290 AE--KALELGRHDVGGWDLVVGKAE 312
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 100 (40.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D T +G ++ F + D K
Sbjct: 86 IFVGGLNPEATEEKIR----EYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Query: 581 LEMSGTEIGG 590
LE + G
Sbjct: 142 LEKKFHNVSG 151
Score = 96 (38.9 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIELN 477
+FVG L + + D++++F++ EV D + D + GR +G+G + F K +E
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 478 GQMLGNRAI 486
L R I
Sbjct: 62 EHRLDGRLI 70
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 160 (61.4 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 52/181 (28%), Positives = 88/181 (48%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEV-AEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAI- 474
T+FVG+L V +Q F V + V ++ +D GR KGYG V+FA + +A+
Sbjct: 177 TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMT 236
Query: 475 ELNGQMLGNRAIRLD-FARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
E+NG + R +R+ A ++ TP ++ +G TIF+ G D +V E+
Sbjct: 237 EMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEE 296
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
+R + F GE+ + + G K ++ F S +AL ++GT++GG S
Sbjct: 297 HLR----QVFSPYGELVHVKIV----AG--KRCGFVQFGTRASAEQALSSLNGTQLGGQS 346
Query: 593 L 593
+
Sbjct: 347 I 347
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 139 (54.0 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI 474
S LFVG L + + + ++ F+ EV + + +D + GR +G+G V F+ + A+ AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 475 -ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
E++G+ L R IR++ A ER + P S + GG G
Sbjct: 94 KEMDGKELNGRQIRVNLATERSS-APRSSFGGGGGYGGGGGG 134
Score = 112 (44.5 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G S G D +SL++ F S GE+T +V D +TG +G ++ F+ DS N A
Sbjct: 37 LFVGGL--SWGTDD--SSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 581 L-EMSGTEIGGYSLVVDEAKQ 600
+ EM G E+ G + V+ A +
Sbjct: 93 IKEMDGKELNGRQIRVNLATE 113
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 159 (61.0 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 45/184 (24%), Positives = 94/184 (51%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
+++ N ++ +++ FS+ + + V++ +D+ G+ KG+G V F S E A KA+E +N
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
G+ + + I + A+++ ++ RG ++IK D ++ ++++R
Sbjct: 252 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR- 310
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVVD 596
F S G I+R+ V ++ G KG + F+ + KA+ EM+G +G L +
Sbjct: 311 ---NEFSSFGSISRVKVMQE--EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Query: 597 EAKQ 600
A++
Sbjct: 366 LAQR 369
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 44/188 (23%), Positives = 87/188 (46%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G +F+ NL S++ + FS +++ ++ SD G KGY V F + A +AI
Sbjct: 96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS-KGYAFVHFQNQSAADRAI 154
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
E +NG++L + ++ R + + + + ++IK F + ++
Sbjct: 155 EEMNGKLL--KGCKVFVGRFKN--------RKDREAELRSKASEFTNVYIKNFGGDMDDE 204
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
+ L++ F G+ + V D +G KG ++ F ++ KA+E M+G +I G
Sbjct: 205 R----LKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQL 259
Query: 593 LVVDEAKQ 600
+ V A++
Sbjct: 260 IFVGRAQK 267
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 120 (47.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKA 473
SKT L V LP ++ Q ++++ FS + EV +L D G GYG V + + DA +A
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERA 91
Query: 474 IE-LNGQMLGNRAIRLDFAR 492
I LNG L ++ I++ +AR
Sbjct: 92 ISTLNGLRLQSKTIKVSYAR 111
Score = 88 (36.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 411 PQSGGSK--TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASV 467
P S K L++ LP ++ Q DV+ F +++ R+ D A G +G + F
Sbjct: 112 PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKR 171
Query: 468 EDAHKAI-ELNGQ 479
+A AI +LNGQ
Sbjct: 172 AEAEDAIKDLNGQ 184
Score = 81 (33.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 493 ERGAYTPYSGGNES--NSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEIT 550
+R ++P S + S + G + IFI ++G+D L + FG G +T
Sbjct: 230 QRFRFSPMSVDHMSGMSGVNVPGNSSSGWCIFIY----NLGQDADEGILWQMFGPFGAVT 285
Query: 551 RISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ V +D++T KG ++ T + A+ ++G +G L V
Sbjct: 286 NVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQV 331
Score = 58 (25.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD-ADSFNKALEMSGT 586
S + + + +EE FG G I V D +G +G+A++ F A++ + +++G
Sbjct: 125 SGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
Query: 587 EIGG 590
+ G
Sbjct: 185 KPPG 188
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 102 (41.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D++++FS+ EVVD L D GR +G+G V F E K ++
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 62
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 63 EHKLNGKVI 71
Score = 92 (37.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G E+++R E+FG GE+ I +P D T +G ++ F + + K
Sbjct: 88 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 143
Query: 581 LEMSGTEIG 589
+E +G
Sbjct: 144 MEKKYHNVG 152
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKA 473
G +++VGN PF + ++ NFFS + ++ +VR+ D + GR +G+ +EFA A +A
Sbjct: 3 GIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRA 62
Query: 474 IE-LNGQMLGNRAIRLDFARE 493
+E +NG R +R++ A +
Sbjct: 63 VEQMNGAEFNGRPLRVNLANK 83
Score = 96 (38.9 bits), Expect = 0.00040, P = 0.00040
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 526 FDSSVGEDQVRASLEE---HFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE 582
F VG + + EE F S G+I + + D +TG +G A+++F + S +A+E
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 583 -MSGTEIGGYSLVVDEAKQ 600
M+G E G L V+ A +
Sbjct: 65 QMNGAEFNGRPLRVNLANK 83
>TAIR|locus:2164062 [details] [associations]
symbol:AT5G53700 "AT5G53700" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR012677 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
EMBL:AY924860 IPI:IPI00541754 RefSeq:NP_200181.2 UniGene:At.51093
ProteinModelPortal:Q5BPG8 EnsemblPlants:AT5G53700.1 GeneID:835451
KEGG:ath:AT5G53700 TAIR:At5g53700 eggNOG:NOG284821
HOGENOM:HOG000137610 OMA:CCHESKA PhylomeDB:Q5BPG8
ProtClustDB:CLSN2687563 Genevestigator:Q5BPG8 Uniprot:Q5BPG8
Length = 251
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/78 (39%), Positives = 54/78 (69%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF--TDADS-F 577
I ++G+D+SV E ++ +L +HF SCG+I I VP+D+ +K ++ F + +S
Sbjct: 23 ISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFKKRILKSPLFIIFHAKEGESPV 82
Query: 578 NKALEMSGTEIGGYSLVV 595
+KALE+SGT++GG+++VV
Sbjct: 83 DKALELSGTDVGGWNVVV 100
Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
Identities = 47/165 (28%), Positives = 78/165 (47%)
Query: 437 FSEVAEVVDVRLSSDADGRF-KGYGHVEFASVED---AHKAIELNGQMLGNRAIRLDFAR 492
F+ ++VD+ + D R K + F + E KA+EL+G +G + +
Sbjct: 45 FASCGKIVDIDVPRDFKKRILKSPLFIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLP 104
Query: 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD--SSVGEDQVRASLEEHFGSCGEIT 550
+ Y GG + F KG R T+ +K +D S++ + ++ L +HF SCGE+T
Sbjct: 105 GQQMYRD-PGGVDR--F-KGER-----TLIVKVYDTPSTLSKIDLQIGLCKHFSSCGEVT 155
Query: 551 RISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
ISV + + A +D +KALE+SG G+ +VV
Sbjct: 156 GISVLVHGNLCCHESKARVDIMGKGCVDKALELSGRTADGWKIVV 200
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 45/184 (24%), Positives = 94/184 (51%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
+++ N ++ +++ FS+ + + V++ +D+ G+ KG+G V F S E A KA+E +N
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
G+ + + I + A+++ ++ RG ++IK D ++ ++++R
Sbjct: 310 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR- 368
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVVD 596
F S G I+R+ V ++ G KG + F+ + KA+ EM+G +G L +
Sbjct: 369 ---NEFSSFGSISRVKVMQE--EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 423
Query: 597 EAKQ 600
A++
Sbjct: 424 LAQR 427
Score = 139 (54.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 44/188 (23%), Positives = 87/188 (46%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G +F+ NL S++ + FS +++ ++ SD G KGY V F + A +AI
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS-KGYAFVHFQNQSAADRAI 212
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
E +NG++L + ++ R + + + + ++IK F + ++
Sbjct: 213 EEMNGKLL--KGCKVFVGRFKN--------RKDREAELRSKASEFTNVYIKNFGGDMDDE 262
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
+ L++ F G+ + V D +G KG ++ F ++ KA+E M+G +I G
Sbjct: 263 R----LKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQL 317
Query: 593 LVVDEAKQ 600
+ V A++
Sbjct: 318 IFVGRAQK 325
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 45/173 (26%), Positives = 87/173 (50%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
++V NL S+ ++ F E + D +G+ KG+G V F + +DA +A++ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 478 GQMLGNRAIRLDFARERGAY-TPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ ++ + A+++ T E + + + Q ++ +++K D SV +D++R
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN-LYVKNLDESVTDDKLR 344
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEI 588
EHF G IT V +D +G +G ++ F+ + +A+ EM+G I
Sbjct: 345 ----EHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Score = 134 (52.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 42/193 (21%), Positives = 91/193 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + FS ++ +++ D G+ KGYG V++ + E A
Sbjct: 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAH--TIFIKGFDS 528
AI+ LNG +L ++ + + G + + Q+ G+ +++K
Sbjct: 188 GAIDKLNGMLLNDKQVYV------GPFV--------HKLQRDPSGEKVKFTNVYVKNLSE 233
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587
S+ +++ L + FG G T + +D + G KG +++F ++D +A++ ++G
Sbjct: 234 SLSDEE----LNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKT 288
Query: 588 IGGYSLVVDEAKQ 600
V +A++
Sbjct: 289 FDDKEWFVGKAQK 301
Score = 131 (51.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 45/135 (33%), Positives = 68/135 (50%)
Query: 398 AESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFK 457
A +G AA Q G+ +L+VG+L +V + + F++ +VV VR+ D R
Sbjct: 28 AAAGAAAAAAGAAQQ--GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRS 85
Query: 458 -GYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
GYG+V +A+ +DA +A+ ELN L RAIR+ ++ P S +K G G
Sbjct: 86 LGYGYVNYATPQDASRALNELNFMALNGRAIRVMYS----VRDP--------SLRKSGVG 133
Query: 516 QAAHTIFIKGFDSSV 530
IFIK D S+
Sbjct: 134 N----IFIKNLDKSI 144
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 57/196 (29%), Positives = 94/196 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSE-VAEVVDVRLSSDAD-GRFKGYGHVEFASVED 469
++G ++FVG+L V + FS+ V ++ D++ GR KGYG V F +
Sbjct: 197 ENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENE 256
Query: 470 AHKAI-ELNGQMLGNRAIRLDFARERGAYTPY----------SGGNESN-SFQKGGR--G 515
+A+ E+NG NR +R+ A + A +GG+ SN S G + G
Sbjct: 257 RSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDG 316
Query: 516 QAAH-TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
++ + TIF+ G D V ++ +R + F GE+ + +P G KG ++ F D
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLR----QPFSQFGEVVSVKIP----VG--KGCGFVQFADR 366
Query: 575 DSFNKALE-MSGTEIG 589
S A+E ++GT IG
Sbjct: 367 KSAEDAIESLNGTVIG 382
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/119 (34%), Positives = 60/119 (50%)
Query: 412 QSGGSKT---LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVE 468
QS G T +FVG + V D++ FS+ EVV V++ KG G V+FA +
Sbjct: 313 QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG-----KGCGFVQFADRK 367
Query: 469 DAHKAIE-LNGQMLGNRAIRLDFARE-----RG-AYTPYSGG-NESNSFQKGGRGQAAH 519
A AIE LNG ++G +RL + R RG + ++GG + + + GG G A H
Sbjct: 368 SAEDAIESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGYSRGHGYNNGG-GYANH 425
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 158 (60.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 49/184 (26%), Positives = 83/184 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
LFVG L +S Q ++++FS+ EVVD + D + +G+G V+F +
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 61
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQ--AAHTIFIKGFDSSVGEDQV 535
L R I RG + E +QKG R ++ IF+ G + GE ++
Sbjct: 62 PHTLDGRNIDPKPCTPRGMQPERTRPKEG--WQKGSRSDNNKSNKIFVGGIPHNCGETEL 119
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
R E+F G +T + + D + +G ++ F D S ++A+ M +I G + V
Sbjct: 120 R----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 175
Query: 596 DEAK 599
A+
Sbjct: 176 KRAE 179
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 161 (61.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 48/185 (25%), Positives = 92/185 (49%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
++V NL V++ +Q+ FS+ +++ V++ D G +G+G V F E+A KA+ +N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + R + + A++R E + R Q + +++K D S+ ++++R
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN-LYVKNLDDSIDDEKLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G +G L V
Sbjct: 312 ----KEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
Score = 154 (59.3 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 46/191 (24%), Positives = 87/191 (45%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D G +G+G V F + E A
Sbjct: 94 RKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQ 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
AI +NG +L +R + + + R + G R I++K V
Sbjct: 153 NAISTMNGMLLNDRKVFVGHFKSR----------REREVELGARAMEFTNIYVKNLHVDV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
E + L++ F G++ + V +D D+G +G +++F + KA+ M+G E+
Sbjct: 203 DEQR----LQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVS 257
Query: 590 GYSLVVDEAKQ 600
G L V A++
Sbjct: 258 GRLLYVGRAQK 268
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 158 (60.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 49/184 (26%), Positives = 84/184 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
LFVG L +S Q ++++FS+ EVVD + D + +G+G V+F +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHT--IFIKGFDSSVGEDQV 535
L R I RG + E +QKG R ++ + IF+ G + GE ++
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEG--WQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
R E+F G +T + + D + +G ++ F D S ++A+ M +I G + V
Sbjct: 130 R----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185
Query: 596 DEAK 599
A+
Sbjct: 186 KRAE 189
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 158 (60.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 49/184 (26%), Positives = 84/184 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
LFVG L +S Q ++++FS+ EVVD + D + +G+G V+F +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHT--IFIKGFDSSVGEDQV 535
L R I RG + E +QKG R ++ + IF+ G + GE ++
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEG--WQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
R E+F G +T + + D + +G ++ F D S ++A+ M +I G + V
Sbjct: 130 R----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185
Query: 596 DEAK 599
A+
Sbjct: 186 KRAE 189
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 161 (61.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 47/191 (24%), Positives = 92/191 (48%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS +++ ++ D G +GYG V F + E A+
Sbjct: 94 RKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAAN 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L +R + + + R + G + ++IK F
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSR----------RERELEYGAKVMEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L+E F + G + V D ++G +G ++++ + + KA+ EM+G E+
Sbjct: 199 GEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GRMVYVGRAQK 268
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/185 (23%), Positives = 88/185 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ ++ FS + V++ D GR +G+G V + + E+A KA+ E+N
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + R + + A++R E ++ R Q + +++K D + +D++R
Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN-LYVKNLDDGIDDDRLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 312 ----KEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
>ZFIN|ZDB-GENE-010328-19 [details] [associations]
symbol:eif4h "eukaryotic translation initiation
factor 4h" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-010328-19 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OrthoDB:EOG46DM3S eggNOG:NOG240551
EMBL:BC065640 IPI:IPI00481882 UniGene:Dr.76638
ProteinModelPortal:Q6P0F5 SMR:Q6P0F5 STRING:Q6P0F5 PRIDE:Q6P0F5
InParanoid:Q6P0F5 NextBio:20816803 ArrayExpress:Q6P0F5 Bgee:Q6P0F5
Uniprot:Q6P0F5
Length = 263
Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 37/100 (37%), Positives = 58/100 (58%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIEL 476
T +VGNLPF+ Q D+ F +++ V VRL D + +FKG+ +VEF +E +A+
Sbjct: 45 TAYVGNLPFNTVQGDIDAIFRDLS-VRSVRLVRDKETDKFKGFCYVEFDDLESLKEALTY 103
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQ 516
+G +LG+R++R+D A G GG F+K RG+
Sbjct: 104 DGALLGDRSLRVDIAE--GRRQERGGGGFG--FRKDDRGR 139
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 161 (61.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 49/191 (25%), Positives = 90/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D +G +G+G V F + E A
Sbjct: 94 RKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGS-RGHGFVHFETQEAAT 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L +R + + + R + + G R ++IK F
Sbjct: 153 RAIQTMNGMLLNDRKVFVGHFKSR----------KEREAEFGARAMEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
G+D L E F G+ + V D+ TG KG +++F + KA+ +M+G EI
Sbjct: 199 GDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEIN 257
Query: 590 GYSLVVDEAKQ 600
G + V A++
Sbjct: 258 GRMVYVGRAQK 268
Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 46/202 (22%), Positives = 95/202 (47%)
Query: 402 KKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGH 461
+K + F ++ +++ N ++ ++ FS + + V++ D GR KG+G
Sbjct: 176 RKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGF 235
Query: 462 VEFASVEDAHKAI-ELNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAH 519
V F E+A KA+ ++NG+ + R + + A++R + E ++ R Q +
Sbjct: 236 VNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVN 295
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+++K D + ++++R + F G IT V + G KG ++ F+ + K
Sbjct: 296 -LYVKNLDDGIDDERLR----KEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATK 348
Query: 580 AL-EMSGTEIGGYSLVVDEAKQ 600
A+ EM+G + L V A++
Sbjct: 349 AVTEMNGRIVSTKPLYVALAQR 370
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ +V +V + D + R +G+G V F + EDA A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFARE-----RGAYTPYSGGNESNSFQKGGRGQ 516
NG+ + R IR+D A + RG Y S G F +GGRG+
Sbjct: 68 NGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRG--FFRGGRGR 110
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 161 (61.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/185 (25%), Positives = 93/185 (50%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
++V NL V++ +Q+ FS +++ V++ D G +G+G V F E+A KA+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + R + + A++R + E + R Q + +++K D S+ ++++R
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVN-LYVKNLDDSIDDEKLR 311
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G +G L V
Sbjct: 312 ----KEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
Query: 596 DEAKQ 600
A++
Sbjct: 366 ALAQR 370
Score = 154 (59.3 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 46/191 (24%), Positives = 88/191 (46%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + + FS ++ ++ D G +G+G V F + E A
Sbjct: 94 RKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQ 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI +NG +L +R + + + R + G R I++K V
Sbjct: 153 QAITTMNGMLLNDRKVFVGHFKSR----------REREVELGARAMEFTNIYVKNLHVDV 202
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA-LEMSGTEIG 589
E L++ F G++ + V +D D+G +G +++F + KA ++M+G E+
Sbjct: 203 DEQ----GLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVS 257
Query: 590 GYSLVVDEAKQ 600
G L V A++
Sbjct: 258 GRLLYVGRAQK 268
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 123 (48.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT L V LP S+ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKA 124
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 125 INTLNGLRLQTKTIKVSYARPSSA 148
Score = 86 (35.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 477 NGQ 479
NGQ
Sbjct: 215 NGQ 217
Score = 78 (32.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 308 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 367
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 368 GYRLGDRVLQV 378
Score = 48 (22.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571
S + + + LE+ F G I + D TG +G+ ++ F
Sbjct: 158 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRF 201
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 157 (60.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 57/207 (27%), Positives = 97/207 (46%)
Query: 394 KMVDAESGKKAAQTPFTPQSGGSKT--LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
K++ E A TP + + S +FVG+L + D++ F+ + D R+ D
Sbjct: 70 KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 129
Query: 452 -ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER--GAYTPYSGGNESN 507
A G+ KGYG V F + DA AI+ + GQ LG R IR ++A + + Y +
Sbjct: 130 MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL 189
Query: 508 SFQKG-GRGQAAH-TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKG 565
S+ + + + T++ G S + E +R + F G+I I V D KG
Sbjct: 190 SYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQT----FSPFGQIMEIRVFPD------KG 239
Query: 566 IAYLDFTDADSFNKAL-EMSGTEIGGY 591
+++ F+ +S A+ ++GT I G+
Sbjct: 240 YSFIRFSSHESAAHAIVSVNGTTIEGH 266
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 46/180 (25%), Positives = 86/180 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+FV N+ ++ ++ F E V++ DA G+ KG+G V + + E A KA+ +L+
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 96
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + + + + A+++ E ++ R I+IK D ++ +++
Sbjct: 97 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDETINDEK-- 153
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
L+E F S G I+R V + G KG + F+ + KA+ EM+G +G L V
Sbjct: 154 --LKEEFSSFGSISRAKVMMEVGQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 55/211 (26%), Positives = 102/211 (48%)
Query: 393 VKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVA--EVVDVRLSS 450
VK+ + E A+ P + +K L+ GNLP++V+ A + + A E+V+V +
Sbjct: 62 VKLEEEEKDDGASAVLDPPAAVNTK-LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNR 120
Query: 451 DADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
D G+ +G+ V ++VED + I+ L+G RA++++FA + P N+ +
Sbjct: 121 DT-GQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKP---KP----NKEPLY 172
Query: 510 QKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYL 569
+ H +F+ +V + SL F CG++ V D DTG +G ++
Sbjct: 173 P-----ETEHKLFVGNLSWTVTSE----SLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Query: 570 DFTDADSFNKALE-MSGTEIGGYSLVVDEAK 599
++ ALE + G E+ G ++ V+ A+
Sbjct: 224 CYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 158 (60.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI- 474
S ++FVGNL + D+ FFS++ +VV + + G +G G VEF + +D +AI
Sbjct: 160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIR 218
Query: 475 ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG--RGQAAHTIFIKGFDSSVGE 532
+ +G +R I F R+ P + E + +G + H + +K +SV
Sbjct: 219 QYDGAFFMDRKI---FVRQDNP-PPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNW 274
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYS 592
+L++ F CG + V D D G G + F D ++A+E + GYS
Sbjct: 275 Q----ALKDIFKECGNVAHADVELDGD-GVSTGSGTVSFYDIKDLHRAIE----KYNGYS 325
Query: 593 L 593
+
Sbjct: 326 I 326
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 47/198 (23%), Positives = 81/198 (40%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
+ V NLP SV +++ F E V + D DG G G V F ++D H+AIE N
Sbjct: 263 VIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYN 322
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGN------------ESNSFQKG--GRGQAAHTIFI 523
G + LD + + G + E+ F + G G+ I+
Sbjct: 323 GYSIEGNV--LDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGERNRLIYC 380
Query: 524 KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE- 582
S ++ L + F + G++ + D G+ GIA +++ + D + +E
Sbjct: 381 SNLPFSTA----KSDLYDLFETIGKVNNAELRYD-SKGAPTGIAVVEYDNVDDADVCIER 435
Query: 583 MSGTEIGGYSLVVDEAKQ 600
++ GG L + AK+
Sbjct: 436 LNNYNYGGCDLDISYAKR 453
>UNIPROTKB|F8W0K0 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021052
ProteinModelPortal:F8W0K0 SMR:F8W0K0 Ensembl:ENST00000551002
ArrayExpress:F8W0K0 Bgee:F8W0K0 Uniprot:F8W0K0
Length = 170
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG--RFKGYGHVEFASVEDAHKAIE 475
T F+GNLP+ V + ++ FF + + VRL + R KG+G+ EF ++ A+
Sbjct: 51 TAFLGNLPYDVTEESIKEFFRGL-NISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 109
Query: 476 LNGQMLGNRAIRLDFA 491
LN + LGNR IR+D A
Sbjct: 110 LNEESLGNRRIRVDVA 125
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQAAHTIFIKGF-DS 528
NG+ + R IR+D A R RG Y GG+ F +GGRG+ F +G D
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGRGRG--FSRGGGDR 121
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
G ++ + + GS + S Y S G +Y D D+
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG-SYRDSYDS 166
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQAAHTIFIKGF-DS 528
NG+ + R IR+D A R RG Y GG+ F +GGRG+ F +G D
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGRGRG--FSRGGGDR 121
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
G ++ + + GS + S Y S G +Y D D+
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG-SYRDSYDS 166
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQAAHTIFIKGF-DS 528
NG+ + R IR+D A R RG Y GG+ F +GGRG+ F +G D
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGRGRG--FSRGGGDR 121
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
G ++ + + GS + S Y S G +Y D D+
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG-SYRDSYDS 166
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE-L 476
LFVG L F ++ ++ FS+ ++ +V + D + R +G+G V F + EDA A+ +
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 477 NGQMLGNRAIRLDFARE-----RGAYTPYSGGNESNSFQKGGRGQ 516
NG+ + R IR+D A + RG Y S G F +GGRG+
Sbjct: 68 NGKTVDGRQIRVDQAGKSSNDRRGGYRGGSSGG-GRGFFRGGRGR 111
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 160 (61.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 46/184 (25%), Positives = 88/184 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477
++V NL + +++ F + + + D DG+ + +G V F + EDA +A+E LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
G+ ++ + A+++ GG +++K D +V ++++R
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR- 345
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVVD 596
E F G IT V +D +G+ KG ++ F+ A ++ L EM+G +GG L V
Sbjct: 346 ---ELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVA 401
Query: 597 EAKQ 600
A++
Sbjct: 402 LAQR 405
Score = 140 (54.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFK-GYGHVEFASVEDAHK 472
G +L+VG+L F+V + + ++F+EV +VV VR+ DA GYG+V +++ +DA K
Sbjct: 43 GALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
Query: 473 AIE-LNGQMLGNRAIRLDFARERGAYTPYSG-GN 504
A++ LN L + IR+ ++ R + SG GN
Sbjct: 103 AMQKLNYSYLNGKMIRITYS-SRDSSARRSGVGN 135
Score = 138 (53.6 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 48/188 (25%), Positives = 90/188 (47%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G LFV NL SV+ + FS +V ++++D G+ +GYG V+F + + A AI
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAI 191
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
E LNG++L ++ I F G P+ E S +++K + +D
Sbjct: 192 EKLNGKVLNDKQI---FV---G---PFLRKEERES---AADKMKFTNVYVKNLSEATTDD 239
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592
+++ + FG G I+ V +D D G + +++F + + +A+E ++G +
Sbjct: 240 ELKTT----FGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKE 294
Query: 593 LVVDEAKQ 600
V +A++
Sbjct: 295 WYVGKAQK 302
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 160 (61.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 45/169 (26%), Positives = 80/169 (47%)
Query: 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474
G+ +F+ NL ++ V + FS ++ ++++D +G KGYG V F + A AI
Sbjct: 143 GNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Query: 475 E-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
E +NG +L ++ + + G + P + + G G +F+K F + ++
Sbjct: 203 EKVNGMLLSDKKVYV------GKFQPRA----QRMKELGESGLKYTNVFVKNFGEHLDQE 252
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE 582
++ A F GEIT V D G KG ++ F D D+ +A+E
Sbjct: 253 KLSAM----FSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVE 296
Score = 153 (58.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 58/219 (26%), Positives = 101/219 (46%)
Query: 390 VTDVKMVDAESGKKAAQTPFTPQSGGSKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRL 448
++D K+ + +A + +SG T +FV N ++Q + FS+ E+ +
Sbjct: 210 LSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVV 269
Query: 449 SSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR-----ERGAYTPYSG 502
+DA G+ KG+G V FA + A +A+E LN +L +L R ER A
Sbjct: 270 MTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRK- 328
Query: 503 GNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
E+ ++ R Q + +++K + + +D +R +HF S G IT V D + G
Sbjct: 329 -YEALKQERVQRYQGVN-LYVKNIEEDLNDDGLR----DHFSSFGTITSAKVMVD-ENGR 381
Query: 563 VKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
KG ++ F + A+ +M+ IG L V A++
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQR 420
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 100 (40.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D T +G ++ F + D K
Sbjct: 86 IFVGGLNPEATEEKIR----EYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Query: 581 LEMSGTEIGG 590
LE + G
Sbjct: 142 LEKKFHNVSG 151
Score = 96 (38.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIELN 477
+FVG L + + D++++F++ EV D + D + GR +G+G + F K +E
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 478 GQMLGNRAI 486
L R I
Sbjct: 62 EHRLDGRLI 70
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 157 (60.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 53/191 (27%), Positives = 91/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADV-QNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVED 469
++G ++FVG+L V A + + F V ++ D++ GR KGYG V F +
Sbjct: 208 ENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENE 267
Query: 470 AHKAI-ELNGQMLGNRAIRLDFAR-ERGAYTPYSGGNESNSFQ--KGGRGQAAH------ 519
+A+ E+NG +R +R+ A +R A G+++ + GG G +
Sbjct: 268 RSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNS 327
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
TIF+ G D+ V E+ L + F GE+ + +P G KG ++ F + S +
Sbjct: 328 TIFVGGLDADVTEED----LMQPFSDFGEVVSVKIP----VG--KGCGFVQFANRQSAEE 377
Query: 580 AL-EMSGTEIG 589
A+ ++GT IG
Sbjct: 378 AIGNLNGTVIG 388
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/101 (33%), Positives = 51/101 (50%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI- 474
+ T+FVG L V + D+ FS+ EVV V++ KG G V+FA+ + A +AI
Sbjct: 326 NSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-----KGCGFVQFANRQSAEEAIG 380
Query: 475 ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
LNG ++G +RL + R GN+ N G+G
Sbjct: 381 NLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWNGGYSRGQG 421
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 156 (60.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 49/184 (26%), Positives = 83/184 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
LFVG L +S Q ++++FS+ EVVD + D + +G+G V+F +
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 61
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQ--AAHTIFIKGFDSSVGEDQV 535
L R I RG + E +QKG R ++ IF+ G + GE ++
Sbjct: 62 PHTLDGRNIDPKPCTPRGMQPERTRPKEG--WQKGPRSDNSKSNKIFVGGIPHNCGETEL 119
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
R E+F G +T + + D + +G ++ F D S ++A+ M +I G + V
Sbjct: 120 R----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 175
Query: 596 DEAK 599
A+
Sbjct: 176 KRAE 179
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 159 (61.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 48/191 (25%), Positives = 90/191 (47%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ N+ S++ + + FS ++ ++ D +G KGYG V F + E A+
Sbjct: 94 RKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAN 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AIE +NG +L +R + + + R + + G + ++IK F
Sbjct: 153 RAIETMNGMLLNDRKVFVGHFKSR----------KEREAEMGAKAVEFTNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIG 589
GED L+ F G+ + V D + G +G +++F + +A+ EM+G E+
Sbjct: 199 GEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELN 257
Query: 590 GYSLVVDEAKQ 600
G L V A++
Sbjct: 258 GRVLYVGRAQK 268
Score = 157 (60.3 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 53/207 (25%), Positives = 100/207 (48%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N ++ ++N F+E + + V + +D GR
Sbjct: 180 EAEMGAKAVE--FT-------NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRS 230
Query: 457 KGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGR 514
+G+G V F + DA +A+ E+NG+ L R + + A++R E ++ R
Sbjct: 231 RGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQR 290
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
Q + +++K D S+ ++++R + F G IT V D G +G ++ F+
Sbjct: 291 YQGVN-LYVKNLDDSIDDEKLR----KEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSP 343
Query: 575 DSFNKAL-EMSGTEIGGYSLVVDEAKQ 600
+ KA+ EM+G + L V A++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQR 370
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 49/185 (26%), Positives = 86/185 (46%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE- 475
+L+VG+L V +A + FS +++ +R+ D R GY ++ F DA A++
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+N +++ R IR+ +++ P +K G G IFIK D S+
Sbjct: 72 MNYEVIKGRPIRIMWSQR----DP--------GLRKSGVGN----IFIKNMDESIDNK-- 113
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594
+L + F + G I V D + GS KG ++ F ++ N+A+E M+G + +
Sbjct: 114 --ALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAANRAIETMNGMLLNDRKVF 169
Query: 595 VDEAK 599
V K
Sbjct: 170 VGHFK 174
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 102 (41.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D++++FS+ EVVD L D GR +G+G V F E K ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 61 EHKLNGKVI 69
Score = 93 (37.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G E+++R E+FG+ GE+ I +P D T +G ++ F + + K
Sbjct: 86 IFVGGLSPDTPEEKIR----EYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 141
Query: 581 LEMSGTEIG 589
+E +G
Sbjct: 142 MEKKYHNVG 150
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 156 (60.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 49/184 (26%), Positives = 83/184 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
LFVG L +S Q ++++FS+ EVVD + D + +G+G V+F +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQ--AAHTIFIKGFDSSVGEDQV 535
L R I RG + E +QKG R ++ IF+ G + GE ++
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEG--WQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
R E+F G +T + + D + +G ++ F D S ++A+ M +I G + V
Sbjct: 130 R----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185
Query: 596 DEAK 599
A+
Sbjct: 186 KRAE 189
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAI 474
+KTL+VGNLP+ + +Q SE EV+ R+ + + GR +GYG +E EDA K +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFM 60
Query: 475 E-LNGQMLGNRAIRLDFARER 494
LNG+ + R + + ARER
Sbjct: 61 TGLNGKEVEGRQLVVSEARER 81
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAI 474
+KTL+VGNLP+ + +Q SE EV+ R+ + + GR +GYG +E EDA K +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFM 60
Query: 475 E-LNGQMLGNRAIRLDFARER 494
LNG+ + R + + ARER
Sbjct: 61 TGLNGKEVEGRQLVVSEARER 81
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE- 475
+++VGN PF + D+ N+FS+ V +VR+ D + GR +G+ VEF A +A++
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 476 LNGQMLGNRAIRLDFARER 494
NG RA+R++ A+ R
Sbjct: 65 FNGVDFNGRALRVNLAQNR 83
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE- 475
+++VGN PF + D+ N+FS+ V +VR+ D + GR +G+ VEF A +A++
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 476 LNGQMLGNRAIRLDFARER 494
NG RA+R++ A+ R
Sbjct: 65 FNGVDFNGRALRVNLAQNR 83
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 102 (41.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D++++FS+ EVVD L D GR +G+G V F E K ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 62 EHKLNGKVI 70
Score = 93 (37.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G E+++R E+FG+ GE+ I +P D T +G ++ F + + K
Sbjct: 87 IFVGGLSPDTPEEKIR----EYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 142
Query: 581 LEMSGTEIG 589
+E +G
Sbjct: 143 MEKKYHNVG 151
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 156 (60.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 49/184 (26%), Positives = 83/184 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
LFVG L +S Q ++++FS+ EVVD + D + +G+G V+F +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQ--AAHTIFIKGFDSSVGEDQV 535
L R I RG + E +QKG R ++ IF+ G + GE ++
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEG--WQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
R E+F G +T + + D + +G ++ F D S ++A+ M +I G + V
Sbjct: 130 R----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185
Query: 596 DEAK 599
A+
Sbjct: 186 KRAE 189
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 156 (60.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 49/184 (26%), Positives = 83/184 (45%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
LFVG L +S Q ++++FS+ EVVD + D + +G+G V+F +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQ--AAHTIFIKGFDSSVGEDQV 535
L R I RG + E +QKG R ++ IF+ G + GE ++
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEG--WQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
R E+F G +T + + D + +G ++ F D S ++A+ M +I G + V
Sbjct: 130 R----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185
Query: 596 DEAK 599
A+
Sbjct: 186 KRAE 189
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 121 (47.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD--ADGRFKGYGHVEFASVEDAHK 472
SKT L V LP ++ Q ++++ F + E+ +L D +G+ GYG V + +DA K
Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEK 123
Query: 473 AIE-LNGQMLGNRAIRLDFARERGA 496
AI LNG L + I++ +AR A
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPSSA 148
Score = 84 (34.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 477 NGQ 479
NGQ
Sbjct: 215 NGQ 217
Score = 78 (32.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 309 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 368
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 369 GYRLGDRVLQV 379
Score = 48 (22.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 158 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Query: 587 EIGG 590
+ G
Sbjct: 218 KPPG 221
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 141 (54.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 44/152 (28%), Positives = 73/152 (48%)
Query: 451 DADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSF 509
D +G KGY V F + E A KAIE +NG +L +R + + + R +
Sbjct: 46 DENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR----------KEREA 94
Query: 510 QKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYL 569
+ G + + ++IK F V ++ SL+E F G+ + V +D G KG ++
Sbjct: 95 ELGAKAKEFTNVYIKNFGEEVDDE----SLKELFSQFGKTLSVKVMRD-PNGKSKGFGFV 149
Query: 570 DFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600
+ + NKA+E M+G EI G + V A++
Sbjct: 150 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 181
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 28/99 (28%), Positives = 55/99 (55%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF 456
+AE G KA + FT +++ N V+ ++ FS+ + + V++ D +G+
Sbjct: 93 EAELGAKAKE--FT-------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS 143
Query: 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494
KG+G V + EDA+KA+E +NG+ + + I + A+++
Sbjct: 144 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 182
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 60/208 (28%), Positives = 90/208 (43%)
Query: 384 KTPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEV 443
K KK + D E G K + P S T+FVGNLP + ++ + F V
Sbjct: 127 KVSKKAKANANNKD-EEGVKRIRNPAEEAS----TVFVGNLPINTKRVQLVKLFQPYGLV 181
Query: 444 VDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRL---DFARERGAYTPY 500
+RL + A G+ + + H + + + L + +A+ L +F TP
Sbjct: 182 QSIRLRT-AGGK-QLFKHKQRKVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLRVTPA 239
Query: 501 SGGNESNSF--QKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDY 558
S + Q+ A TIF+ S E+Q+R E F SCGEI I +D
Sbjct: 240 SMAEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEEQLR----EIFSSCGEIDYIRCLQDG 295
Query: 559 DTGSVKGIAYLDFTDADSFNKALEMSGT 586
D G KG+AY+ F D+ ALE++ T
Sbjct: 296 DKGC-KGVAYVCFQKPDAVGLALELNQT 322
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 119 (46.9 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT L V LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSA 120
Score = 84 (34.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 477 NGQ 479
NGQ
Sbjct: 187 NGQ 189
Score = 78 (32.5 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 266 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 325
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 326 GYRLGDRVLQV 336
Score = 48 (22.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 587 EIGG 590
+ G
Sbjct: 190 KPPG 193
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 134 (52.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQ 516
NG+ + R IR+D A R RG Y GG+ F +GGRG+
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGR 110
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 134 (52.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQ 516
NG+ + R IR+D A R RG Y GG+ F +GGRG+
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGR 110
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 134 (52.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE 475
+TL+VGNLP+ + V+ FSE V VRL D G+ +G+G VE AS +D KAI
Sbjct: 71 RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAIS 129
Query: 476 -LNGQMLGNRAIRLDFARER 494
LN R +++ A+ER
Sbjct: 130 ALNDTEFQQRTLKVREAKER 149
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 134 (52.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE 475
+TL+VGNLP+ + V+ FSE V VRL D G+ +G+G VE AS +D KAI
Sbjct: 71 RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAIS 129
Query: 476 -LNGQMLGNRAIRLDFARER 494
LN R +++ A+ER
Sbjct: 130 ALNDTEFQQRTLKVREAKER 149
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 102 (41.0 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D++++FS+ EVVD L D GR +G+G V F E K ++
Sbjct: 32 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 91
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 92 EHKLNGKVI 100
Score = 92 (37.4 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G E+++R E+FG GE+ I +P D T +G ++ F + + K
Sbjct: 117 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 172
Query: 581 LEMSGTEIG 589
+E +G
Sbjct: 173 MEKKYHNVG 181
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 155 (59.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 60/199 (30%), Positives = 92/199 (46%)
Query: 406 QTP-FTPQSGGS-KTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHV 462
QTP PQ S KTL++G L +++ ++ +S V E V+V++ D GY V
Sbjct: 34 QTPPVVPQGNDSAKTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNAGYCFV 93
Query: 463 EFASVEDAHKAIELNGQMLGN--RAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHT 520
EF S E A KA+ LNG + N R +L++A SGG + ++ RG ++
Sbjct: 94 EFPSSEAATKALGLNGSPVPNSQRVFKLNWA---------SGGGLVD--RRDERGPE-YS 141
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ V E + + + F SC + D TG +G ++ FTD +A
Sbjct: 142 IFVGDLGPEVNEFVLVSLFQARFPSCKSA---KIMTDAMTGQSRGYGFVRFTDESDQQRA 198
Query: 581 L-EMSGTEIGGYSLVVDEA 598
L EM G G + + A
Sbjct: 199 LVEMQGVYCGNRPMRISTA 217
>FB|FBgn0005411 [details] [associations]
symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
Uniprot:Q24562
Length = 416
Score = 155 (59.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 55/231 (23%), Positives = 109/231 (47%)
Query: 394 KMVDAESGKKAAQTPFTPQSG----GS------KTLFVGNLPFSVEQADVQNFFSEVAEV 443
K + A A+ P TPQ+ GS + L+VGN+PF V + ++ FF++ +
Sbjct: 60 KAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHL 119
Query: 444 VDVRLSSDAD------GRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAY 497
V + ++ + K + +EF S+++ +A+ +G L +++++ R Y
Sbjct: 120 VGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKI---RRPHDY 176
Query: 498 TPYSGGNESNSFQKG--GRG-------QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE 548
P G ++ + + G + H IFI G + + +DQV+ L S G+
Sbjct: 177 QPMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLL----SFGK 232
Query: 549 ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEA 598
+ ++ KD TG KG A+ ++ D ++++ ++G ++G L+V A
Sbjct: 233 LRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRA 283
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 119 (46.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT L V LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSA 120
Score = 84 (34.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 477 NGQ 479
NGQ
Sbjct: 187 NGQ 189
Score = 78 (32.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 339 GYRLGDRVLQV 349
Score = 48 (22.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 587 EIGG 590
+ G
Sbjct: 190 KPPG 193
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 57/207 (27%), Positives = 96/207 (46%)
Query: 394 KMVDAESGKKAAQTPFTPQSGGSKT--LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD 451
K++ E A TP + + S +FVG+L + D++ F+ + D R+ D
Sbjct: 70 KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 129
Query: 452 -ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER--GAYTPYSGGNESN 507
A G+ KGYG V F + DA AI+ + GQ LG R IR ++A + + Y +
Sbjct: 130 MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL 189
Query: 508 SFQKG-GRGQAAH-TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKG 565
S+ + ++ T++ G S + E +R + F G+I I V D KG
Sbjct: 190 SYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQT----FSPFGQIMEIRVFPD------KG 239
Query: 566 IAYLDFTDADSFNKAL-EMSGTEIGGY 591
+++ F +S A+ ++GT I G+
Sbjct: 240 YSFVRFNSHESAAHAIVSVNGTTIEGH 266
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 119 (46.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT L V LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSA 120
Score = 84 (34.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 477 NGQ 479
NGQ
Sbjct: 187 NGQ 189
Score = 78 (32.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 280 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 340 GYRLGDRVLQV 350
Score = 48 (22.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 587 EIGG 590
+ G
Sbjct: 190 KPPG 193
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 103 (41.3 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFK 457
++G + Q + + +FVG L + + D++++F++ EVVD + D + GR +
Sbjct: 52 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 111
Query: 458 GYGHVEFASVEDAHKAIELNGQMLGNRAI 486
G+G + F K ++ L R I
Sbjct: 112 GFGFILFKDATSVEKVLDQKEHRLDGRVI 140
Score = 92 (37.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D + +G ++ F + + K
Sbjct: 156 IFVGGLNPEATEEKIR----EYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKV 211
Query: 581 LEMSGTEIGG 590
LE I G
Sbjct: 212 LEKKFHTISG 221
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 154 (59.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
+FVG+L + D++ F+ + D R+ D A G+ KGYG V F + DA AI+ +
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 477 NGQMLGNRAIRLDFARER--GAYTPYSGGNESNSFQKG-GRGQAAH-TIFIKGFDSSVGE 532
GQ LG R IR ++A + + Y + S+ + + + T++ G S + E
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 223
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
+R + F G+I I V D KG +++ F+ +S A+ ++GT I G+
Sbjct: 224 QLMRQT----FSPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNGTTIEGH 273
Score = 141 (54.7 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 47/178 (26%), Positives = 82/178 (46%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE- 475
KTL+VGNL V +A + FS++ + ++ D G Y VEF A A+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 61
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ--KGGRGQAAHTIFIKGFDSSVGED 533
+NG+ + + +++++A TP S +++S R Q +F+ + +
Sbjct: 62 MNGRKIMGKEVKVNWAT-----TPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 116
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA-DSFNKALEMSGTEIGG 590
++A+ F G I+ V KD TG KG ++ F + D+ N +M G +GG
Sbjct: 117 DIKAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 170
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 154 (59.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
+FVG+L + D++ F+ + D R+ D A G+ KGYG V F + DA AI+ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 477 NGQMLGNRAIRLDFARER--GAYTPYSGGNESNSFQKGGRGQAAH--TIFIKGFDSSVGE 532
GQ LG R IR ++A + + Y + S+ + + + T++ G S + E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
+R + F G+I I V D KG +++ F+ +S A+ ++GT I G+
Sbjct: 228 QLMRQT----FSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGTTIEGH 277
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 47/178 (26%), Positives = 82/178 (46%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE- 475
KTL+VGNL V +A + FS++ + ++ D G Y VEF A A+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 65
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ--KGGRGQAAHTIFIKGFDSSVGED 533
+NG+ + + +++++A TP S +++S R Q +F+ + +
Sbjct: 66 MNGRKIMGKEVKVNWAT-----TPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA-DSFNKALEMSGTEIGG 590
++A+ F G I+ V KD TG KG ++ F + D+ N +M G +GG
Sbjct: 121 DIKAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 174
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 133 (51.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 34/107 (31%), Positives = 54/107 (50%)
Query: 400 SGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKG 458
S + +QTP PQ+ S LFV L ++ F++ EV D ++ +D G KG
Sbjct: 39 SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98
Query: 459 YGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGN 504
+G V +A++ED+ K I ++G+ L I ++AR R Y N
Sbjct: 99 FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQN 145
>UNIPROTKB|E2R0G3 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
Length = 471
Score = 155 (59.6 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 50/200 (25%), Positives = 99/200 (49%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAE-----------VVDVRLSSDADGRFKGYGHVEF 464
++ L+VGN+PF + + + +FF+ V+ V+++ D K + +EF
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEF 202
Query: 465 ASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR-----GQAAH 519
SV++ +A+ +G + +++++ R Y P G +E+ S G +AH
Sbjct: 203 RSVDETTQAMAFDGIIFQGQSLKI---RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAH 259
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+FI G + + +DQV+ L S G + ++ KD TG KG A+ ++ D + ++
Sbjct: 260 KLFIGGLPNYLNDDQVKELLT----SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
Query: 580 ALE-MSGTEIGGYSLVVDEA 598
A+ ++G ++G L+V A
Sbjct: 316 AIAGLNGMQLGDKKLLVQRA 335
>UNIPROTKB|Q24JZ8 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
Length = 475
Score = 155 (59.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 50/200 (25%), Positives = 99/200 (49%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAE-----------VVDVRLSSDADGRFKGYGHVEF 464
++ L+VGN+PF + + + +FF+ V+ V+++ D K + +EF
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEF 202
Query: 465 ASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR-----GQAAH 519
SV++ +A+ +G + +++++ R Y P G +E+ S G +AH
Sbjct: 203 RSVDETTQAMAFDGIIFQGQSLKI---RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAH 259
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+FI G + + +DQV+ L S G + ++ KD TG KG A+ ++ D + ++
Sbjct: 260 KLFIGGLPNYLNDDQVKELLT----SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
Query: 580 ALE-MSGTEIGGYSLVVDEA 598
A+ ++G ++G L+V A
Sbjct: 316 AIAGLNGMQLGDKKLLVQRA 335
>UNIPROTKB|P26368 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
"C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
Uniprot:P26368
Length = 475
Score = 155 (59.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 50/200 (25%), Positives = 99/200 (49%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAE-----------VVDVRLSSDADGRFKGYGHVEF 464
++ L+VGN+PF + + + +FF+ V+ V+++ D K + +EF
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEF 202
Query: 465 ASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR-----GQAAH 519
SV++ +A+ +G + +++++ R Y P G +E+ S G +AH
Sbjct: 203 RSVDETTQAMAFDGIIFQGQSLKI---RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAH 259
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+FI G + + +DQV+ L S G + ++ KD TG KG A+ ++ D + ++
Sbjct: 260 KLFIGGLPNYLNDDQVKELLT----SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
Query: 580 ALE-MSGTEIGGYSLVVDEA 598
A+ ++G ++G L+V A
Sbjct: 316 AIAGLNGMQLGDKKLLVQRA 335
>MGI|MGI:98886 [details] [associations]
symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
Uniprot:P26369
Length = 475
Score = 155 (59.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 50/200 (25%), Positives = 99/200 (49%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAE-----------VVDVRLSSDADGRFKGYGHVEF 464
++ L+VGN+PF + + + +FF+ V+ V+++ D K + +EF
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEF 202
Query: 465 ASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR-----GQAAH 519
SV++ +A+ +G + +++++ R Y P G +E+ S G +AH
Sbjct: 203 RSVDETTQAMAFDGIIFQGQSLKI---RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAH 259
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+FI G + + +DQV+ L S G + ++ KD TG KG A+ ++ D + ++
Sbjct: 260 KLFIGGLPNYLNDDQVKELLT----SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
Query: 580 ALE-MSGTEIGGYSLVVDEA 598
A+ ++G ++G L+V A
Sbjct: 316 AIAGLNGMQLGDKKLLVQRA 335
>RGD|1597319 [details] [associations]
symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
finger domain binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
Length = 475
Score = 155 (59.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 50/200 (25%), Positives = 99/200 (49%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAE-----------VVDVRLSSDADGRFKGYGHVEF 464
++ L+VGN+PF + + + +FF+ V+ V+++ D K + +EF
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEF 202
Query: 465 ASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR-----GQAAH 519
SV++ +A+ +G + +++++ R Y P G +E+ S G +AH
Sbjct: 203 RSVDETTQAMAFDGIIFQGQSLKI---RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAH 259
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
+FI G + + +DQV+ L S G + ++ KD TG KG A+ ++ D + ++
Sbjct: 260 KLFIGGLPNYLNDDQVKELLT----SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
Query: 580 ALE-MSGTEIGGYSLVVDEA 598
A+ ++G ++G L+V A
Sbjct: 316 AIAGLNGMQLGDKKLLVQRA 335
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 119 (46.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT L V LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 124
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 125 INTLNGLRLQTKTIKVSYARPSSA 148
Score = 84 (34.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 477 NGQ 479
NGQ
Sbjct: 215 NGQ 217
Score = 78 (32.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 307 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 366
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 367 GYRLGDRVLQV 377
Score = 48 (22.0 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 158 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Query: 587 EIGG 590
+ G
Sbjct: 218 KPPG 221
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 119 (46.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT L V LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 125
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 126 INTLNGLRLQTKTIKVSYARPSSA 149
Score = 84 (34.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 477 NGQ 479
NGQ
Sbjct: 216 NGQ 218
Score = 78 (32.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 309 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 368
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 369 GYRLGDRVLQV 379
Score = 48 (22.0 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 159 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Query: 587 EIGG 590
+ G
Sbjct: 219 KPPG 222
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 119 (46.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 416 SKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT L V LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 125
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 126 INTLNGLRLQTKTIKVSYARPSSA 149
Score = 84 (34.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 477 NGQ 479
NGQ
Sbjct: 216 NGQ 218
Score = 78 (32.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 308 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 367
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 368 GYRLGDRVLQV 378
Score = 48 (22.0 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 159 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Query: 587 EIGG 590
+ G
Sbjct: 219 KPPG 222
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 137 (53.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 36/110 (32%), Positives = 58/110 (52%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAH 471
+GG L+VG+L F++ + ++ F ++ ++ L D+D GR KGYG + F+ E A
Sbjct: 9 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 68
Query: 472 KAIE-LNGQMLGNRAIRLDFARER---GAYTPYSGGNESNSF-QKGGRGQ 516
+A+E LNG L R +R+ ER G + G++ GGR Q
Sbjct: 69 RALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQ 118
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 506 SNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKG 565
+N+ QKG G +++ ++ ED +R E G+I I + KD DTG KG
Sbjct: 2 ANNLQKGNGGPMR--LYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKG 55
Query: 566 IAYLDFTDADSFNKALE-MSGTEIGG 590
++ F+D++ +ALE ++G E+ G
Sbjct: 56 YGFITFSDSECARRALEQLNGFELAG 81
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 118 (46.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 416 SKTLFVGN-LPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT + N LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSA 120
Score = 84 (34.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 477 NGQ 479
NGQ
Sbjct: 187 NGQ 189
Score = 78 (32.5 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 339 GYRLGDRVLQV 349
Score = 48 (22.0 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 587 EIGG 590
+ G
Sbjct: 190 KPPG 193
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 118 (46.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 416 SKTLFVGN-LPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKA 473
SKT + N LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA KA
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 474 IE-LNGQMLGNRAIRLDFARERGA 496
I LNG L + I++ +AR A
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSA 120
Score = 84 (34.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 477 NGQ 479
NGQ
Sbjct: 187 NGQ 189
Score = 78 (32.5 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G +T + V +D++T KG ++ T+ D A+ ++
Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 339 GYRLGDRVLQV 349
Score = 48 (22.0 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 130 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 587 EIGG 590
+ G
Sbjct: 190 KPPG 193
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 101 (40.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIELN 477
+FVG L + + D++++F++ EVVD + D + GR +G+G + F K ++
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 61
Query: 478 GQMLGNRAI 486
L R I
Sbjct: 62 EHRLDGRVI 70
Score = 92 (37.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D + +G ++ F + + K
Sbjct: 86 IFVGGLNPEATEEKIR----EYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKV 141
Query: 581 LEMSGTEIGG 590
LE I G
Sbjct: 142 LEKKFHTISG 151
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 152 (58.6 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 57/199 (28%), Positives = 100/199 (50%)
Query: 405 AQTPFTPQSGGSKT--LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGH 461
A TP + + S +FVG+L + DV+ F+ ++ D R+ D A G+ KGYG
Sbjct: 83 ASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGF 142
Query: 462 VEFASVEDAHKAIE-LNGQMLGNRAIRLDFA-RERGAYTPYSGGNESN--SFQKG-GRGQ 516
+ F + DA AI+ +NGQ LG R IR ++A R+ A + G S S+++ +
Sbjct: 143 ISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSS 202
Query: 517 AAH-TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575
++ T++ G S + DQ+ + + F G+I I V + KG +++ F +
Sbjct: 203 PSNCTVYCGGIASGLS-DQL---MRQTFSPFGQIMEIRVFPE------KGYSFVRFDSHE 252
Query: 576 SFNKAL-EMSGTEIGGYSL 593
A+ ++GT I G+++
Sbjct: 253 GAAHAIVSVNGTCIEGHTV 271
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 156 (60.0 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 52/194 (26%), Positives = 86/194 (44%)
Query: 400 SGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKG 458
S K A+ T + +TL + + D++ FFS V V DVR+ +D+ GR KG
Sbjct: 153 SPPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKG 212
Query: 459 YGHVEFASVEDAHKAIELNGQMLGNRAIRLD-FARERGAYTPYSGGNESNSFQKGGRGQA 517
+VEF E + LNGQ L +++ ER S + G +G
Sbjct: 213 ICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPT 272
Query: 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSF 577
H + ++ + E +R + F S G I +I + D + + +G A + F +AD
Sbjct: 273 -H-VLVENLHPKIDEKMIR----DIFESFGRIEKIDLEVDSNREN-RGFATITFRNADDA 325
Query: 578 NKALE-MSGTEIGG 590
K+ E ++ E+ G
Sbjct: 326 QKSCEQLNNFELAG 339
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 153 (58.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 54/195 (27%), Positives = 91/195 (46%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + FS ++ ++ D +G KGY +V F S+ A+
Sbjct: 101 RKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGS-KGYAYVHFDSLAAAN 159
Query: 472 KAI-ELNGQMLGNRAI---RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHT-IFIKGF 526
+AI +NG L NR + R F ER A E + R +A T +F+K F
Sbjct: 160 RAIWHMNGVRLNNRQVYVGRFKFPEERAA--------EVRT-----RDKATFTNVFVKNF 206
Query: 527 DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA-LEMSG 585
+ +D+ L+E F G + V +D +G KG ++ + ++ KA L++ G
Sbjct: 207 GDDMDDDK----LKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 586 TEIGGYSLVVDEAKQ 600
I G L V A++
Sbjct: 262 KSIDGKVLYVGRAQK 276
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 46/180 (25%), Positives = 86/180 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+FV N ++ ++ FSE V++ D+ G+ KG+G V + + E A KA+ +L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ + + + + A+++ E ++ R I+IK D ++ +++
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDETIDDEK-- 317
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
L+E F S G I+R V + G KG + F+ + KA+ EM+G +G L V
Sbjct: 318 --LKEEFSSFGSISRAKVM--VEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQV 373
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 153 (58.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
+FVG+L + D++ F+ + D R+ D A G+ KGYG V F + DA AI+ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 477 NGQMLGNRAIRLDFARER--GAYTPYSGGNESNSFQKG-GRGQAAH-TIFIKGFDSSVGE 532
GQ LG R IR ++A + + Y + S+ + + ++ T++ G S + E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
+R + F G+I I V D KG +++ F +S A+ ++GT I G+
Sbjct: 228 QLMRQT----FSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 47/178 (26%), Positives = 82/178 (46%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE- 475
KTL+VGNL V +A + FS++ + ++ D G Y VEF A A+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFYEHRHAAAALAA 65
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ--KGGRGQAAHTIFIKGFDSSVGED 533
+NG+ + + +++++A TP S +++S R Q +F+ + +
Sbjct: 66 MNGRKIMGKEVKVNWAT-----TPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA-DSFNKALEMSGTEIGG 590
++A+ F G I+ V KD TG KG ++ F + D+ N +M G +GG
Sbjct: 121 DIKAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 174
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 153 (58.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
+FVG+L + D++ F+ + D R+ D A G+ KGYG V F + DA AI+ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 477 NGQMLGNRAIRLDFARER--GAYTPYSGGNESNSFQKG-GRGQAAH-TIFIKGFDSSVGE 532
GQ LG R IR ++A + + Y + S+ + + ++ T++ G S + E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
+R + F G+I I V D KG +++ F +S A+ ++GT I G+
Sbjct: 228 QLMRQT----FSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 47/178 (26%), Positives = 82/178 (46%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE- 475
KTL+VGNL V +A + FS++ + ++ D G Y VEF A A+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 65
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ--KGGRGQAAHTIFIKGFDSSVGED 533
+NG+ + + +++++A TP S +++S R Q +F+ + +
Sbjct: 66 MNGRKIMGKEVKVNWAT-----TPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA-DSFNKALEMSGTEIGG 590
++A+ F G I+ V KD TG KG ++ F + D+ N +M G +GG
Sbjct: 121 DIKAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 174
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 153 (58.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
+FVG+L + D++ F+ + D R+ D A G+ KGYG V F + DA AI+ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 477 NGQMLGNRAIRLDFARER--GAYTPYSGGNESNSFQKG-GRGQAAH-TIFIKGFDSSVGE 532
GQ LG R IR ++A + + Y + S+ + + ++ T++ G S + E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
+R + F G+I I V D KG +++ F +S A+ ++GT I G+
Sbjct: 228 QLMRQT----FSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 47/178 (26%), Positives = 82/178 (46%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE- 475
KTL+VGNL V +A + FS++ + ++ D G Y VEF A A+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 65
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ--KGGRGQAAHTIFIKGFDSSVGED 533
+NG+ + + +++++A TP S +++S R Q +F+ + +
Sbjct: 66 MNGRKIMGKEVKVNWAT-----TPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA-DSFNKALEMSGTEIGG 590
++A+ F G I+ V KD TG KG ++ F + D+ N +M G +GG
Sbjct: 121 DIKAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 174
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 153 (58.9 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
+FVG+L + D++ F+ + D R+ D A G+ KGYG V F + DA AI+ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 477 NGQMLGNRAIRLDFARER--GAYTPYSGGNESNSFQKG-GRGQAAH-TIFIKGFDSSVGE 532
GQ LG R IR ++A + + Y + S+ + + ++ T++ G S + E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGY 591
+R + F G+I I V D KG +++ F +S A+ ++GT I G+
Sbjct: 228 QLMRQT----FSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 47/178 (26%), Positives = 82/178 (46%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE- 475
KTL+VGNL V +A + FS++ + ++ D G Y VEF A A+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFYEHRHAAAALAA 65
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQ--KGGRGQAAHTIFIKGFDSSVGED 533
+NG+ + + +++++A TP S +++S R Q +F+ + +
Sbjct: 66 MNGRKIMGKEVKVNWAT-----TPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA-DSFNKALEMSGTEIGG 590
++A+ F G I+ V KD TG KG ++ F + D+ N +M G +GG
Sbjct: 121 DIKAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 174
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 148 (57.2 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 48/178 (26%), Positives = 80/178 (44%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +FV NL S+ + + S ++ + D +G KGYG V F + E A
Sbjct: 94 RKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAE 152
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+AI+ +NG +L R + + + R + + G R + ++IK F
Sbjct: 153 RAIKKMNGMLLNGRKVFVGQFKSR----------KEREAELGARAKEFPNVYIKNF---- 198
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTE 587
GED L++ FG G + V D ++G KG ++ F + KA+ EM+G E
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 151 (58.2 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 52/211 (24%), Positives = 93/211 (44%)
Query: 397 DAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVA--EVVDVRLSSDADG 454
D G + + F P+ LFVGNL + V + F + E+ +V + + D
Sbjct: 131 DVSEGAVSERAEF-PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETD- 188
Query: 455 RFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGG 513
+ +G+G V +SV++A A+E N L R + ++ A RG+
Sbjct: 189 QSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGS----------------- 231
Query: 514 RGQAAHTIFIKGFDSSVGE---DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
R + A ++ F VG D LE+ F G++ V D +TG +G ++
Sbjct: 232 RPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291
Query: 571 FTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600
+D D N+A+ + G + G ++ V+ A++
Sbjct: 292 MSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
Score = 148 (57.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-L 476
++VGNLP+ V+ ++ FSE +VV+ R+ D + GR +G+G V + V++ ++AI L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 477 NGQMLGNRAIRLDFARER 494
+GQ L RAIR++ A ER
Sbjct: 306 DGQNLEGRAIRVNVAEER 323
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 149 (57.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 53/188 (28%), Positives = 83/188 (44%)
Query: 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDA 470
P+ +FV NL F + FS+ VVD +++ DA G KG+G + F + E A
Sbjct: 67 PRQEQPNGIFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYFETPEAA 126
Query: 471 HKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSS 529
KA E N R R++ A A P GN Q+ +++I +
Sbjct: 127 QKACEEANNTFWHGR--RINVAPRIKASKP---GNRDAMNQE--ERTPTSSLYI----GN 175
Query: 530 VGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI 588
+ + A+L F + + + D TG +G A+ DF D +S KA+E + E+
Sbjct: 176 IPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLMEL 235
Query: 589 GGYSLVVD 596
G +L VD
Sbjct: 236 MGRTLRVD 243
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 156 (60.0 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 408 PFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASV 467
P T SG +F+ NL S++ + FS ++ +++ D GR KGYG V+F
Sbjct: 128 PSTRLSGKGN-IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186
Query: 468 EDAHKAIE-LNGQMLGNRAIRLD-FARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKG 525
E A AI+ LNG ++ ++ + + F R + + N+ +++K
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQ------ERARDENT-----PTPRFTNVYVKN 235
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS 584
+GED++R + FG G I+ V +D +G+ + +++F ++ A+E M+
Sbjct: 236 LPKEIGEDELRKT----FGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 585 GTEIGGYSLVVDEAKQ 600
G +G L V A++
Sbjct: 291 GISLGDDVLYVGRAQK 306
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
Q+ + +L+ G+L V +A + + F VA VV VR+ D + R GY ++ F++ DA+
Sbjct: 44 QTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAY 103
Query: 472 KAIE-LNGQMLGNRAIRLDFARERGAYTPYSG-GN 504
+A+E LN L +R IR+ + R T SG GN
Sbjct: 104 RAMEALNYTPLFDRPIRIMLSN-RDPSTRLSGKGN 137
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 102 (41.0 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D++++FS+ EVVD L D GR +G+G V F E K ++
Sbjct: 47 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 106
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 107 EHKLNGKVI 115
Score = 92 (37.4 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G E+++R E+FG GE+ I +P D T +G ++ F + + K
Sbjct: 132 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 187
Query: 581 LEMSGTEIG 589
+E +G
Sbjct: 188 MEKKYHNVG 196
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 102 (41.0 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFK 457
++G + Q + + +FVG L + + D++++F++ EVVD + D + GR +
Sbjct: 57 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 116
Query: 458 GYGHVEFASVEDAHKAIELNGQMLGNRAI 486
G+G + F K ++ L R I
Sbjct: 117 GFGFILFKDSSSVEKVLDQKEHRLDGRVI 145
Score = 91 (37.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D +G ++ F + D K
Sbjct: 161 IFVGGLNPEATEEKIR----EYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Query: 581 LEMSGTEIGG 590
LE + G
Sbjct: 217 LEKKFHTVSG 226
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 102 (41.0 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFK 457
++G + Q + + +FVG L + + D++++F++ EVVD + D + GR +
Sbjct: 57 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 116
Query: 458 GYGHVEFASVEDAHKAIELNGQMLGNRAI 486
G+G + F K ++ L R I
Sbjct: 117 GFGFILFKDSSSVEKVLDQKEHRLDGRVI 145
Score = 91 (37.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D +G ++ F + D K
Sbjct: 161 IFVGGLNPEATEEKIR----EYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Query: 581 LEMSGTEIGG 590
LE + G
Sbjct: 217 LEKKFHTVSG 226
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 153 (58.9 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 55/210 (26%), Positives = 92/210 (43%)
Query: 392 DVKMVDAESGKKAAQTPFTPQSG---GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRL 448
DV + E G++ + P P+ +T+FVGNLP + + +++FF E +V VR
Sbjct: 155 DVALSLNEDGRQRTKVPLNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRF 214
Query: 449 SS--DADGRF-KGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNE 505
S A+G K ++ D K+I RA R GA G
Sbjct: 215 RSVMPAEGTLSKKLAAIKRKFHPD-QKSINAYVVFKEERAAAKALQRN-GAQIA-EGFRI 271
Query: 506 SNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKG 565
+ ++F+ V E ++LEEHF CG I + + ++ TG +G
Sbjct: 272 RVDLASETASRDKRSVFVGNLPYRVDE----SALEEHFLDCGSIVAVRIVRNPLTGVGRG 327
Query: 566 IAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
Y+ F + D+ + AL+++ +E+ G L V
Sbjct: 328 FGYVLFENTDAVHLALKLNNSELMGRKLRV 357
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 102 (41.0 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D++++FS+ EVVD L D GR +G+G V F E K ++
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 478 GQMLGNRAI 486
L + I
Sbjct: 159 EHKLNGKVI 167
Score = 92 (37.4 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G E+++R E+FG GE+ I +P D T +G ++ F + + K
Sbjct: 184 IFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Query: 581 LEMSGTEIG 589
+E +G
Sbjct: 240 MEKKYHNVG 248
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 152 (58.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 53/195 (27%), Positives = 91/195 (46%)
Query: 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAH 471
+ G +F+ NL S++ + FS ++ ++ D +G KGY +V F S+ A+
Sbjct: 101 RKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAAN 159
Query: 472 KAI-ELNGQMLGNRAI---RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHT-IFIKGF 526
+AI +NG L NR + R F ER A E + R +A T +F+K F
Sbjct: 160 RAIWHMNGVRLNNRQVYVGRFKFPEERAA--------EVRT-----RDRATFTNVFVKNF 206
Query: 527 DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA-LEMSG 585
+ +++++ E+ G + V +D TG KG ++ + ++ KA LE+ G
Sbjct: 207 GDDIDDEKLKKLFSEY----GPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHG 261
Query: 586 TEIGGYSLVVDEAKQ 600
I G L V A++
Sbjct: 262 KSIDGKVLCVGRAQK 276
Score = 147 (56.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 46/179 (25%), Positives = 84/179 (46%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+FV N ++ ++ FSE V++ DA G+ KG+G V + + E A KA+ EL+
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
G+ + + + + A+++ K I+IK D ++ +++
Sbjct: 261 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEK--- 317
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
L+E F G I+R V + G KG + F+ + +KA+ EM+G +G +L V
Sbjct: 318 -LKEEFSLFGSISRAKVMMEVGQG--KGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHV 373
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 156 (60.0 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 56/189 (29%), Positives = 85/189 (44%)
Query: 399 ESGKKAAQTPFTPQSGGSKTL--FVGNLPFSVEQADVQNFFSE-VAEVVDVRLSSDADGR 455
E K F P + +K F+ N+PF V+ +++ E V EV V L DA+G+
Sbjct: 50 EKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK 109
Query: 456 FKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
+G VEF E KA E LN L R +++ +E P G + + QK GR
Sbjct: 110 SRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KE----DP-DGEHARRAMQKAGR 161
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
T+F+ D VG + L+E F G + R + +D D G +GI + F +
Sbjct: 162 --LGSTVFVANLDYKVGWKK----LKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQS 214
Query: 575 DSFNKALEM 583
+A+ M
Sbjct: 215 IEAVQAISM 223
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 156 (60.0 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 56/189 (29%), Positives = 85/189 (44%)
Query: 399 ESGKKAAQTPFTPQSGGSKTL--FVGNLPFSVEQADVQNFFSE-VAEVVDVRLSSDADGR 455
E K F P + +K F+ N+PF V+ +++ E V EV V L DA+G+
Sbjct: 50 EKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK 109
Query: 456 FKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGR 514
+G VEF E KA E LN L R +++ +E P G + + QK GR
Sbjct: 110 SRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KE----DP-DGEHARRAMQKAGR 161
Query: 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574
T+F+ D VG + L+E F G + R + +D D G +GI + F +
Sbjct: 162 --LGSTVFVANLDYKVGWKK----LKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQS 214
Query: 575 DSFNKALEM 583
+A+ M
Sbjct: 215 IEAVQAISM 223
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 153 (58.9 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 48/193 (24%), Positives = 90/193 (46%)
Query: 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVED 469
P++ +FVG+L ++ ++ F + EV + ++ D + + KGYG V + ED
Sbjct: 126 PETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRED 185
Query: 470 AHKAI-ELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAA-HTIFIKGFD 527
A +AI E+NG LG R IR ++A + GG+ + GG G+ H K +D
Sbjct: 186 AERAIDEMNGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYD 245
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYD---------TGSVKGIAYLDFTDADSFN 578
+ + + G+ + + + +D T ++G A++ F +S
Sbjct: 246 E-IFNQAAADNTSVYVGNIANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAA 304
Query: 579 KAL-EMSGTEIGG 590
+A+ +M+ +IGG
Sbjct: 305 RAIVQMNNADIGG 317
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 123 (48.4 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 400 SGKKAAQTPFTPQSGGS----KT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-D 453
S ++ +P Q+GGS KT L V LP ++ Q + ++ F + E+ +L D
Sbjct: 68 SNSRSCPSPM--QTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT 125
Query: 454 GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGA 496
G+ GYG V + +DA KAI LNG L + I++ +AR A
Sbjct: 126 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 169
Score = 86 (35.3 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 477 NGQMLGNRA--IRLDFA 491
NGQ A I + FA
Sbjct: 236 NGQKPSGAAEPITVKFA 252
Score = 73 (30.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMS 584
F ++ D + L + FG G + + V +D++T KG ++ T+ D A+ ++
Sbjct: 328 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 387
Query: 585 GTEIGGYSLVV 595
G +G L V
Sbjct: 388 GYRLGDRVLQV 398
Score = 52 (23.4 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
S + + + LE+ F G I + D TG +G+ ++ F +A++ ++G
Sbjct: 179 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
Query: 587 EIGG 590
+ G
Sbjct: 239 KPSG 242
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 97 (39.2 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFK 457
++G + Q + + +FVG L + + D++++F++ EVVD + + GR K
Sbjct: 46 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSK 105
Query: 458 GYGHVEFASVEDAHKAIELNGQMLGNRAI 486
G+G + F K ++ L R I
Sbjct: 106 GFGFILFKDAASVEKVLDQKEHRLDGRVI 134
Score = 96 (38.9 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D T +G ++ F + + K
Sbjct: 150 IFVGGLNPEATEEKIR----EYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKV 205
Query: 581 LEMSGTEIGG 590
LE I G
Sbjct: 206 LEKKFHTISG 215
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 149 (57.5 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-L 476
++VGNLP+ V+ ++ FSE +VVD R+ SD + GR +G+G V+ ++ + + AI L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 477 NGQMLGNRAIRLDFARER 494
+GQ L RAI+++ A ER
Sbjct: 269 DGQNLEGRAIKVNVAEER 286
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 47/194 (24%), Positives = 90/194 (46%)
Query: 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVA--EVVDVRLSSDADGRFKGYGHVEFASVE 468
P+ LFVGNLP+ V+ + F + E+ +V + D D + +G+G V ++VE
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTD-QSRGFGFVTMSTVE 165
Query: 469 DAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
+A KA+E N + R + ++ A RG+ P + + AA I++
Sbjct: 166 EAEKAVEKFNSFEVNGRRLTVNRAAPRGS-RPE---RQPRVYD------AAFRIYVGNLP 215
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
V ++ EH G++ V D +TG +G ++ ++ + N A+ + G
Sbjct: 216 WDVDSGRLERLFSEH----GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 271
Query: 587 EIGGYSLVVDEAKQ 600
+ G ++ V+ A++
Sbjct: 272 NLEGRAIKVNVAEE 285
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 131 (51.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 37/118 (31%), Positives = 61/118 (51%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LF+G L F + ++ FS+ ++ +V + D + R +G+G V F + +DA A+ +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 477 NGQMLGNRAIRLDFARE-----RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSS 529
NG+ + R IR+D A + RG Y S G F +GGRG+ +G+ SS
Sbjct: 67 NGKAVDGRQIRVDQAGKSSGDRRGGYRGGSSGGRG--FFRGGRGRGGGD---RGYGSS 119
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 103 (41.3 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFK 457
++G + Q + + +FVG L + + D++++F++ EVVD + D + GR +
Sbjct: 52 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 111
Query: 458 GYGHVEFASVEDAHKAIELNGQMLGNRAI 486
G+G + F K ++ L R I
Sbjct: 112 GFGFILFKDAASVEKVLDQKEHRLDGRVI 140
Score = 89 (36.4 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D +G ++ F + + K
Sbjct: 156 IFVGGLNPEATEEKIR----EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 581 LEMSGTEIGG 590
LE + G
Sbjct: 212 LEKKFHTVSG 221
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 147 (56.8 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 45/185 (24%), Positives = 89/185 (48%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELN 477
+++ N ++ +++ F + + V++ +D G+ KG+G V F EDA KA+ E+N
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 85
Query: 478 GQMLGNRAIRLDFARER-GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536
G+ L + I + A+++ T E + R Q + +++K D + ++++R
Sbjct: 86 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLR 144
Query: 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
+ F G IT V + G KG ++ F+ + KA+ EM+G + L V
Sbjct: 145 ----KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 198
Query: 596 DEAKQ 600
A++
Sbjct: 199 ALAQR 203
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 103 (41.3 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 399 ESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFK 457
++G + Q + + +FVG L + + D++++F++ EVVD + D + GR +
Sbjct: 52 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 111
Query: 458 GYGHVEFASVEDAHKAIELNGQMLGNRAI 486
G+G + F K ++ L R I
Sbjct: 112 GFGFILFKDAASVEKVLDQKEHRLDGRVI 140
Score = 89 (36.4 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
IF+ G + E+++R E+FG GEI I +P D +G ++ F + + K
Sbjct: 156 IFVGGLNPEATEEKIR----EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 581 LEMSGTEIGG 590
LE + G
Sbjct: 212 LEKKFHTVSG 221
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 124 (48.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 35/113 (30%), Positives = 54/113 (47%)
Query: 385 TPKKNVTDVKMVDAE--SGKKAAQTPFTPQSGGSKT-LFVGNLPFSVEQADVQNFFSEVA 441
TP N V S ++ P G SKT L + LP + Q +V++ F+ +
Sbjct: 8 TPNNNNVPTSPVQTTYTSTQRYCSAP-NVDIGESKTNLIINYLPQGMTQEEVRSLFTSIG 66
Query: 442 EVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492
E+ +L D G+ GYG V + EDA +A+ NG L N+ I++ +AR
Sbjct: 67 EIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYAR 119
Score = 90 (36.7 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 408 PFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFAS 466
P Q GS L+V +P S+ ++++ F +++ R+ SD G KG G V F
Sbjct: 120 PSNDQIKGSN-LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDK 178
Query: 467 VEDAHKAIE-LNGQMLG--NRAIRLDFARERGAYTP 499
++A AI+ LNG + + I + FA + P
Sbjct: 179 KDEADVAIKTLNGSIPSGCSEQITVKFANNPASNNP 214
Score = 72 (30.4 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD-AD 575
A + +F+ S +D + L FG+ I + + +D T KG A++ ++ +
Sbjct: 372 AGYCLFVYNLSSDT-DDTLLWQLFSQFGA---IVNVKILRDL-TQQCKGYAFVSMSNYTE 426
Query: 576 SFNKALEMSGTEIGGYSLVV 595
++N L ++GT + G +L V
Sbjct: 427 AYNAMLSLNGTNLAGKTLQV 446
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 142 (55.0 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 52/171 (30%), Positives = 81/171 (47%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAI-EL 476
LFVG L F + ++ FS+ ++ +V + D + R +G+G V F +++DA A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 477 NGQMLGNRAIRLDFA------RERGAYTPYSGGNESN-SFQKGGRGQAAHTIFIKGF-DS 528
NG+ + R IR+D A R RG Y GG+ F +GGRG+ F +G D
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG----YRGGSAGGRGFFRGGRGRGRG--FSRGGGDR 121
Query: 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNK 579
G + + + GS + S YD S G +Y D DS+ K
Sbjct: 122 GYGGSRFESRSGGYGGSRDYYSSRSQGGGYDRSS--GGSYRD--SYDSYGK 168
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 130 (50.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 31/99 (31%), Positives = 55/99 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI-EL 476
++VG+L + V ++Q+FF + E+ + +L D + GR KG+ + + + + A +A+ +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
NG L R IR++ ARE GG+ +GGRG
Sbjct: 80 NGIDLQGRKIRVNIARENTGDRRRDGGSGG----RGGRG 114
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 130 (50.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 31/99 (31%), Positives = 55/99 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI-EL 476
++VG+L + V ++Q+FF + E+ + +L D + GR KG+ + + + + A +A+ +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRG 515
NG L R IR++ ARE GG+ +GGRG
Sbjct: 80 NGIDLQGRKIRVNIARENTGDRRRDGGSGG----RGGRG 114
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 130 (50.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 33/86 (38%), Positives = 47/86 (54%)
Query: 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKA- 473
S LFV L +Q+ F+ ++VD R+ +D D GR KG+G V +A++EDA KA
Sbjct: 33 SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92
Query: 474 IELNGQMLGNRAIRLDFARERGAYTP 499
E+N + L I +D AR R P
Sbjct: 93 AEMNAKFLDGWVIFVDPARPREPRRP 118
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 120 (47.3 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 413 SGGSKT-LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDA 470
S SKT L V LP ++ Q ++++ F + E+ +L D G+ GYG V + +DA
Sbjct: 63 SEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDA 122
Query: 471 HKAIE-LNGQMLGNRAIRLDFARERGA 496
KAI LNG L + I++ +AR A
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYARPSSA 149
Score = 84 (34.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE-L 476
L+V LP ++ Q +++ FS+ ++ R+ D G +G G + F +A +AI+ L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 477 NGQ 479
NGQ
Sbjct: 216 NGQ 218
Score = 74 (31.1 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 539 LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595
L + FG G +T + V +D++T KG ++ T+ D A+ ++G +G L V
Sbjct: 321 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQV 378
Score = 47 (21.6 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571
S + + + LE+ F G I + D TG +G+ ++ F
Sbjct: 159 SGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRF 202
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 151 (58.2 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE 475
+++FVGNLP+ + + +QN F E + VRL D D G KG+G+V F S + A++
Sbjct: 252 RSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALK 311
Query: 476 LNGQMLGNRAIRL--DFARERGAYTPYSGGNESNSFQKGG 513
LNG L R IR+ +E+ TP G ++ + GG
Sbjct: 312 LNGSTLQQRKIRVKRSVKKEKEKKTP--PGRKAEGQRTGG 349
Score = 95 (38.5 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 539 LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEI 588
L+ HF CG I + + +D D+G KG Y+ F DS AL+++G+ +
Sbjct: 268 LQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALKLNGSTL 317
Score = 64 (27.6 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSS 450
+T+FVGNLP S ++ D+ + F + + VR S
Sbjct: 149 RTVFVGNLPSSCKKKDLLSVFKKSGVIESVRFRS 182
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 134 (52.2 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 34/112 (30%), Positives = 60/112 (53%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-L 476
LF+G L F + +++ FS+ + +V ++ + + R +G+G V F + +DA A+E +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 477 NGQMLGNRAIRLDFARERGAYTPYSGGNESN---SFQKGGRGQAAHTIFIKG 525
NG+ + R IR+D A + G GG S S++ GG G+ F +G
Sbjct: 67 NGKSVDGRTIRVDEAGKGGG----GGGGRSGGGGSYRGGGGGRGGGGGFFRG 114
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 156 (60.0 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 47/179 (26%), Positives = 90/179 (50%)
Query: 413 SGGSKTLFVGNLPFSVEQADVQ--NFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDA 470
S S T+FV NLP+S+E+ +V+ F EVV +R G F+GY +VEF + A
Sbjct: 700 SKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSA 759
Query: 471 HKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV 530
+A+EL+ +++ R + + ++ + S + +K H +FI G S
Sbjct: 760 QQALELDRKIVEGRPMFVSPCVDKSKNPDFKVFRYSTTLEK-------HKLFISGLPFSC 812
Query: 531 GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA-LEMSGTEI 588
++++ + H G+ ++ R+ + G KG+AY+++ + ++A ++M G I
Sbjct: 813 TKEELEDICKAH-GTVKDL-RLVTNR---AGKPKGLAYVEYENESQASQAVMKMDGMTI 866
WARNING: HSPs involving 560 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.308 0.127 0.353 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 675 397 0.00097 117 3 11 23 0.38 35
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 810
No. of states in DFA: 569 (61 KB)
Total size of DFA: 190 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.50u 0.08s 26.58t Elapsed: 00:00:21
Total cpu time: 26.57u 0.08s 26.65t Elapsed: 00:00:21
Start: Thu May 9 16:01:10 2013 End: Thu May 9 16:01:31 2013
WARNINGS ISSUED: 2