BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045516
(675 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 174/247 (70%), Gaps = 15/247 (6%)
Query: 383 SKTPKKNVTDVKMVDAESGKKAAQT-PFTP-----QSGGSKTLFVGNLPFSVEQADVQNF 436
+KTP+K T V + +S K Q P TP Q+ GSKTLFVGNLP++VEQ V+ F
Sbjct: 409 AKTPQKKETAVSVGSNKSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYNVEQEQVKQF 468
Query: 437 FSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGA 496
F E EVVD+R S+ DG F+G+GHVEFA+ E A KA+EL G L R +RLD ARERGA
Sbjct: 469 FQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALELAGHDLMGRPVRLDLARERGA 528
Query: 497 YTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPK 556
YTP SG + S SF+K + + +TIFIKGFD+S+ Q+R SLEEHFGSCGEITR+S+PK
Sbjct: 529 YTPGSGRDNS-SFKKPAQS-SGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPK 586
Query: 557 DYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAKQRGDFGSGGGRSGGRGG 616
DY+TG+ KG+AY+DF D S +KA E++G+++GGYSL VDEA+ R D + GG
Sbjct: 587 DYETGASKGMAYMDFADNGSLSKAYELNGSDLGGYSLYVDEARPRPD-------NNREGG 639
Query: 617 RSGGRDF 623
SGGRDF
Sbjct: 640 FSGGRDF 646
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 256 bits (654), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 193/299 (64%), Gaps = 21/299 (7%)
Query: 385 TPKKNVTDVKMVDAE--SGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAE 442
TPKK +DV+MVDAE S K +TP GGSKTLF GNL + + ++D++NFF E E
Sbjct: 350 TPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGE 409
Query: 443 VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSG 502
VVDVRLSS DG FKGYGH+EFAS E+A KA+E+NG++L R +RLD A ERG TP +
Sbjct: 410 VVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERG--TPRN- 466
Query: 503 GNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS 562
SN +K G G + TI+++GF SS+GED+++ L HF CGE+TR+ VP D +TG+
Sbjct: 467 ---SNPGRK-GEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGA 522
Query: 563 VKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAKQR-GDFGSGGGRSGGRGGRSGGR 621
+G AY+D T F++AL++SG+EIGG ++ V+E++ R D G R+ RG GR
Sbjct: 523 SRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEESRPRDSDEGRSSNRAPARGA-PRGR 579
Query: 622 DFGRSGGRDGGRFGGRGRGGRDGGRGG-RG----RGRGTPNRPSLAAAGTGKKTTFGDD 675
R+ GGRF R GR RG RG RGRG P++PS+ + G KT F D+
Sbjct: 580 HSDRAP--RGGRFSDRAPRGRHSDRGAPRGRFSTRGRG-PSKPSVMESSKGTKTVFNDE 635
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 149/196 (76%), Gaps = 4/196 (2%)
Query: 406 QTPFTPQSGG--SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVE 463
+TP + QS G S TLF+GNL F++ Q V+ FF EV EV+ VRL++ DG +G+GHV+
Sbjct: 298 KTPASNQSQGTESATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQ 357
Query: 464 FASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFI 523
FAS E+A KA+EL+G L R +RLD A ERGAYTP+S N++ SFQK RG ++ +IF+
Sbjct: 358 FASSEEAKKALELHGCDLDGRPVRLDLAHERGAYTPHSR-NDTGSFQKQNRG-SSQSIFV 415
Query: 524 KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEM 583
KGFDSS+ E ++R SLE HF CGEITR+SVP D +TG+ KGIAY+DF D SF+KALE+
Sbjct: 416 KGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALEL 475
Query: 584 SGTEIGGYSLVVDEAK 599
SG+++GGY+L VDEAK
Sbjct: 476 SGSDLGGYNLYVDEAK 491
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 233 bits (593), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/224 (54%), Positives = 160/224 (71%), Gaps = 16/224 (7%)
Query: 385 TPKKNVTDVKMVDAE-SGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEV 443
TPKK +DV+MVDAE S K +TP TP +GGSKTLF NL F++E+ADV+NFF E EV
Sbjct: 264 TPKKKSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEV 323
Query: 444 VDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERG------A 496
VDVR S++ DG F+G+GHVEFAS E+A KA+E +G+ L R IRLD A+ERG A
Sbjct: 324 VDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPA 383
Query: 497 YTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPK 556
+TP SG +F+ GG G IF+KGFD+S+ ED ++ +L EHF SCGEI +SVP
Sbjct: 384 FTPQSG-----NFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPI 438
Query: 557 DYDTGSVKGIAYLDFTDADSFNKALEMSGTEI-GGYSLVVDEAK 599
D DTG+ KGIAYL+F++ KALE++G+++ GG+ LVVDE +
Sbjct: 439 DRDTGNSKGIAYLEFSEGK--EKALELNGSDMGGGFYLVVDEPR 480
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 14/201 (6%)
Query: 409 FTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF-KGYGHVEFASV 467
+P+ ++T+F L + D+++FFS V +V DVR+ SD + R KG +VEF +
Sbjct: 158 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 217
Query: 468 EDAHKAIELNGQ-MLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGF 526
+ AI L GQ +LG I E+ +N+ QKG G +++
Sbjct: 218 QSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAM-----ANNLQKGNGGPM--RLYVGSL 270
Query: 527 DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSG 585
++ ED +R E G+I I + KD DTG KG ++ F+D++ +ALE ++G
Sbjct: 271 HFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 326
Query: 586 TEIGGYSLVVDEAKQRGDFGS 606
E+ G + V +R D G+
Sbjct: 327 FELAGRPMRVGHVTERLDGGT 347
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 409 FTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF-KGYGHVEFASV 467
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 145 LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDV 204
Query: 468 EDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ R + + + +N+ QKG G +++
Sbjct: 205 SSVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM--RLYVGSLH 258
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G
Sbjct: 259 FNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
Query: 587 EIGGYSLVVDEAKQRGD 603
E+ G + V +R D
Sbjct: 315 ELAGRPMKVGHVTERTD 331
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 409 FTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF-KGYGHVEFASV 467
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 145 LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDV 204
Query: 468 EDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ R + + + +N+ QKG G +++
Sbjct: 205 SSVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM--RLYVGSLH 258
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G
Sbjct: 259 FNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
Query: 587 EIGGYSLVVDEAKQRGD 603
E+ G + V +R D
Sbjct: 315 ELAGRPMKVGHVTERTD 331
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 409 FTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRF-KGYGHVEFASV 467
TP+ ++T+F L + D++ FFS V +V DVR+ SD + R KG +VEF V
Sbjct: 145 LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDV 204
Query: 468 EDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527
AI L GQ R + + + +N+ QKG G +++
Sbjct: 205 SSVPLAIGLTGQ----RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM--RLYVGSLH 258
Query: 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586
++ ED +R E G I I + D +TG KG ++ F+D++ KALE ++G
Sbjct: 259 FNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
Query: 587 EIGGYSLVVDEAKQRGD 603
E+ G + V +R D
Sbjct: 315 ELAGRPMKVGHVTERTD 331
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 39/240 (16%)
Query: 370 DSDDEDEGEEEEASKTPKKNVTDVKMVDAESGKKAAQTPFT-PQSGGSKTLFVGNLPFSV 428
++D E EE++ ++ ++V+ E G++ +T T SG SKTL + NL +S
Sbjct: 441 EADAEKNLEEKQGAEIDGRSVSL--YYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSA 498
Query: 429 EQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQM-LGNRAIR 487
+ ++ F + +++ + G+ KGY +EFAS EDA +A+ +M + R IR
Sbjct: 499 TKETLEEVFE---KATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR 555
Query: 488 LDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHF-GSC 546
L+ SNS R Q + T+F+KG + ED +L+E F GS
Sbjct: 556 LEL-------------QGSNS-----RSQPSKTLFVKG----LSEDTTEETLKESFEGSV 593
Query: 547 GEITRISVPKDYDTGSVKGIAYLDFT---DADSFNKALEMSGTEIGGYSLVVDEAKQRGD 603
R + D +TGS KG ++DF DA + +A+E EI G + +D AK +G+
Sbjct: 594 ----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME--DGEIDGNKVTLDWAKPKGE 647
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578
+FI + + ++++ ++ E F ++ + D TG+ + Y+DF A+
Sbjct: 309 FNLFIGNLNPNKSVNELKFAISELFAK-NDLAVV----DVRTGTNRKFGYVDFESAEDLE 363
Query: 579 KALEMSGTEIGGYSLVVDEAKQR 601
KALE++G ++ G + +++ K R
Sbjct: 364 KALELTGLKVFGNEIKLEKPKGR 386
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 31/206 (15%)
Query: 419 LFVGNLPFSVEQADVQNFF-----SEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKA 473
LFVGNLPFSV+ A + F E+ EV+ +LS GR +G+G V ++ E+ A
Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLS----GRSRGFGFVTMSTKEEVEAA 145
Query: 474 -IELNGQMLGNRAIRLD------------FARERGAYTPYSGGNESNSFQKGGRG----Q 516
+ NG + RAIR++ F RG + Y GG + NS G RG
Sbjct: 146 EQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVD 205
Query: 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADS 576
+++ +++ + S G D + +L+E F G + V D D+G +G ++ ++ A
Sbjct: 206 SSNRVYVG--NLSWGVDDL--ALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKE 261
Query: 577 FNKALE-MSGTEIGGYSLVVDEAKQR 601
N A++ ++G ++ G S+ V A++R
Sbjct: 262 VNDAIDSLNGIDLDGRSIRVSAAEER 287
>sp|Q09100|RNP24_SCHPO RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnp24 PE=4 SV=2
Length = 369
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 39/193 (20%)
Query: 419 LFVGNLPFSVEQADVQNFF--------SEVAE----------VVDVRLSSDADGRF--KG 458
++VGNL F + + +FF EV+E + + + + RF KG
Sbjct: 107 IWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKG 166
Query: 459 YGHVEFASVEDAHK-AIELNGQMLGNRAIRLDFARERGAYTPYSG--GNESNSFQKGGRG 515
+ +V+FA+ EDA K A++ + + L R I + + T +SG +N+ K
Sbjct: 167 FAYVDFAT-EDALKLALQCSEKALNGRNILIK------SNTDFSGRPSKPANTLSKTASI 219
Query: 516 QAAH-----TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
Q++ +F+ D + A L+EHFG G+I R+ + DTG KG ++D
Sbjct: 220 QSSKKEPSSILFVGNLDFETTD----ADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVD 275
Query: 571 FTDADSFNKALEM 583
F D D+ KA+E+
Sbjct: 276 FPDIDTCMKAMEL 288
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 57/211 (27%)
Query: 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI-- 474
T+FVG L ++V+ + F E +V R+ D GR KGYG+V+F + E A A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 475 ----ELNGQML--------------------GNRAIRLDFARERGAYTPYSGGNESNSFQ 510
E++G+M+ GN +L
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLS--------------------- 362
Query: 511 KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570
+ + T+F+ + ED L FG CG+I I +P D +G +KG Y+
Sbjct: 363 -----EPSDTVFVGNLSFNATEDD----LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
Query: 571 FTDADSFNKALEMSGTEIGGYSLVVDEAKQR 601
F+D DS K +EM+G I G +D + R
Sbjct: 414 FSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
L + I D R + KG + +F+ G E+Q++
Sbjct: 210 EHKLDGKLI--DPKRAKAL--------------KGK--EPPKKVFVGGLSPDTSEEQIK- 250
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIG 589
E+FG+ GEI I +P D T +G ++ +TD + K LE +IG
Sbjct: 251 ---EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIG 299
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 524 KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEM 583
K F + D + L E+ GE+ ++ D TG +G ++ F DA S +K LE+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 584 SGTEIGG 590
++ G
Sbjct: 209 KEHKLDG 215
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 403 KAAQTPFTPQS---GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKG 458
+ + P P S G+K +F+G L + + D+ + S EVVD + +D GR +G
Sbjct: 35 RFSACPLDPSSFPTSGNK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRG 93
Query: 459 YGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAA 518
+G V F K +EL L + I D R + KG +
Sbjct: 94 FGFVLFKDAASVDKVLELKEHKLDGKLI--DPKRAKAL--------------KG--KEPP 135
Query: 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578
+F+ G E+Q++ E+FG+ GEI I +P D T +G ++ +TD +
Sbjct: 136 KKVFVGGLSPDTSEEQIK----EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVK 191
Query: 579 KALEMSGTEIG 589
K LE +IG
Sbjct: 192 KLLESRYHQIG 202
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 32 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 91
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
L + I A+ P +F+ G E+Q++
Sbjct: 92 EHKLDGKLIDPKRAKALKGKEP------------------PKKVFVGGLSPDTSEEQIK- 132
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIG 589
E+FG+ GEI I +P D T +G ++ +TD + K LE +IG
Sbjct: 133 ---EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIG 181
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 524 KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEM 583
K F + D + L E+ GE+ ++ D TG +G ++ F DA S K LE+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 118/269 (43%), Gaps = 62/269 (23%)
Query: 372 DDEDEGEEEEA-----SKTPK-KNVTDVKM---VDAE--------------------SGK 402
D+ E E+ A SK K K + ++ DAE +G+
Sbjct: 408 DELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGE 467
Query: 403 KAAQTPF-----TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFK 457
K + + SG SKTL + NL +S + +Q F + +++ + +G+ K
Sbjct: 468 KGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSK 524
Query: 458 GYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQ 516
GY +EFAS EDA +A+ N + + RAIRL+ RG+ R Q
Sbjct: 525 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS--------------PNARSQ 570
Query: 517 AAHTIFIKGFDSSVGEDQVRASLEEHF-GSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575
+ T+F+KG + ED +L+E F GS R + D +TGS KG ++DF +
Sbjct: 571 PSKTLFVKG----LSEDTTEETLKESFDGSV----RARIVTDRETGSSKGFGFVDFNSEE 622
Query: 576 SFNKALE-MSGTEIGGYSLVVDEAKQRGD 603
A E M EI G + +D AK +G+
Sbjct: 623 DAKAAKEAMEDGEIDGNKVTLDWAKPKGE 651
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 82/214 (38%), Gaps = 84/214 (39%)
Query: 419 LFVGNLPFSVEQADVQNFFSEV-----AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKA 473
LFVGNL F+ +++ S+V VVDVR+ G + +G+V+F S ED KA
Sbjct: 310 LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRI-----GMTRKFGYVDFESAEDLEKA 364
Query: 474 IELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV--- 530
+EL G +K F + +
Sbjct: 365 LELTG--------------------------------------------LKVFGNEIKLE 380
Query: 531 ---GEDQ------------------VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYL 569
G+D + L+E F EI +S KD G KGIAY+
Sbjct: 381 KPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS--KD---GKSKGIAYI 435
Query: 570 DF-TDADSFNKALEMSGTEIGGYSLVVDEAKQRG 602
+F T+AD+ E GTEI G S+ + ++G
Sbjct: 436 EFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKG 469
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIELN 477
+F+G L + + D+ + S EVVD + +D GR +G+G V F K +EL
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 478 GQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537
L + I A+ P +F+ G E+Q++
Sbjct: 91 EHKLDGKLIDPKRAKALKGKEP------------------PKKVFVGGLSPDTSEEQIK- 131
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIG 589
E+FG+ GEI I +P D T +G ++ +TD + K LE +IG
Sbjct: 132 ---EYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIG 180
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 524 KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEM 583
K F + D + L E+ GE+ ++ D TG +G ++ F DA S +K LE+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 36/255 (14%)
Query: 367 DEEDSDDEDEGEEEEASKTPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPF 426
D ++D D+ + K ++K+ A+S + + + ++TLFV NLP+
Sbjct: 327 DFLSAEDMDKALQLNGKKLMG---LEIKLEKAKSKESLKE---NKKERDARTLFVKNLPY 380
Query: 427 SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFAS-VEDAHKAIELNGQMLGNRA 485
V + +++N F E VRL + +G KG ++EF + E E G + RA
Sbjct: 381 RVTEDEMKNVFENALE---VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRA 437
Query: 486 IRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGS 545
+ +D Y+G QKGG + + T+ + + E+ +L+E F
Sbjct: 438 MVID----------YTGEKSQQESQKGGGERESKTLIVNNLSYAASEE----TLQELFKK 483
Query: 546 CGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604
T I +P++ + G KG A+++F A+ +AL + TEI G ++ R +F
Sbjct: 484 A---TSIKMPQN-NQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAI-------RLEF 532
Query: 605 GSGGGRSGGRGGRSG 619
S + G R G
Sbjct: 533 SSPSWQKGNMNARGG 547
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 314 SSSSSDESESEEEKPPAKMDVDSSSEEESSDEEPQKKKDVKPNTKALKKESSSDEEDSDD 373
S S DE +E + + E +D + E+ S E +
Sbjct: 176 SWSIDDEWLKKEFEHIGGVIGARVIYERGTDRS--------RGYGYVDFENKSYAEKAIQ 227
Query: 374 EDEGEEEEASKTPKKNVTDVKMVDAESGKKAAQTPFTPQSGGSKTLFVGNLPFSVEQADV 433
E +G+E + T + + KK TP P S TLF+GNL F+ ++ +
Sbjct: 228 EMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP----SDTLFLGNLSFNADRDAI 283
Query: 434 QNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491
F++ EVV VR+ + + + KG+G+V+F+++EDA KA++ L G+ + NR +RLDF+
Sbjct: 284 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343
Query: 492 RER 494
R
Sbjct: 344 SPR 346
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 115/274 (41%), Gaps = 66/274 (24%)
Query: 351 KDVKPNTKALKKESSSDEEDSDDEDEGEEEEASKTPKKNVTDVKMVDAESGKKAAQTPFT 410
+ VKP KKE + +E + + + K+ +ES TPF
Sbjct: 272 EPVKPAPGKRKKEMTKQKEVPEAKKQ-----------------KVEGSES-----TTPF- 308
Query: 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEV-----AEVVDVRLSSDADGRFKGYGHVEFA 465
LF+GNL + A+++ SE VVDVR ++ + +G+V+F
Sbjct: 309 -------NLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTN-----RKFGYVDFE 356
Query: 466 SVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKG 525
S ED KA+EL G + I+L+ + R + + +AA T+ K
Sbjct: 357 SAEDLEKALELTGLKVFGNEIKLEKPKGRDS----------------KKVRAARTLLAKN 400
Query: 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF-TDADSFNKALEMS 584
++ ED+ L+E F EI +S G KGIAY++F ++AD+ E
Sbjct: 401 LSFNITEDE----LKEVFEDALEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQ 451
Query: 585 GTEIGGYSLVVDEAKQRGDFGSGGGRSGGRGGRS 618
G EI G S+ + ++G G++ G S
Sbjct: 452 GAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGES 485
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 21/206 (10%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++N++ + + D + D A R +G+G V F+ + + A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE A P AH K F + ED
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESA-KP-----------------GAHVTVKKLFVGGIKED 110
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L E+F G+I I + D +G +G A++ F D D +K + I G++
Sbjct: 111 TEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNA 170
Query: 594 VVDEAKQRGDFGSGGGRSGGRGGRSG 619
V +A + + RGG G
Sbjct: 171 EVRKALSKQEMQDVQNTRNNRGGNFG 196
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 21/185 (11%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++NF+ + ++ D + D A R +G+G V F+ + + A+
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE A P AH K F + ED
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESA-KP-----------------GAHVTVKKLFVGGIKED 110
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L E+F G+I + D +G +G ++ F D D +K + I G++
Sbjct: 111 TEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNA 170
Query: 594 VVDEA 598
V +A
Sbjct: 171 EVRKA 175
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F ++ F + + D + D R +G+G V ++ VE+ A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S + G AH K F + ED
Sbjct: 95 ARPHKVDGRVVE-----------PKRAVSREDSVKPG-----AHLTVKKIFVGGIKEDTE 138
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
+L ++F G+I I V +D +G +G A++ F D D+ +K + I G++ V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 596 DEA 598
+A
Sbjct: 199 KKA 201
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F ++ F + + D + D R +G+G V ++ VE+ A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S + G AH K F + ED
Sbjct: 95 ARPHKVDGRVVE-----------PKRAVSREDSVKPG-----AHLTVKKIFVGGIKEDTE 138
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
+L ++F G+I I V +D +G +G A++ F D D+ +K + I G++ V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 596 DEA 598
+A
Sbjct: 199 KKA 201
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F ++ F + + D + D R +G+G V ++ VE+ A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S + G AH K F + ED
Sbjct: 95 ARPHKVDGRVVE-----------PKRAVSREDSVKPG-----AHLTVKKIFVGGIKEDTE 138
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
+L ++F G+I I V +D +G +G A++ F D D+ +K + I G++ V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 596 DEA 598
+A
Sbjct: 199 KKA 201
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F +++ F + + D + D + R +G+G V +A+VE+ A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S Q+ G IF+ G + ED
Sbjct: 74 ARPHKVDGRVVE-----------PKRAVSREDS-QRPGAHLTVKKIFVGG----IKEDTE 117
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++F G+I I + D +G +G A++ F D DS +K + + G++ V
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 596 DEA 598
+A
Sbjct: 178 RKA 180
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F +++ F + + D + D + R +G+G V +A+VE+ A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S Q+ G IF+ G + ED
Sbjct: 74 TTPHKVDGRVVE-----------PKRAVSREDS-QRPGAHLTVKKIFVGG----IKEDTE 117
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++F G+I I + D +G +G A++ F D DS +K + + G++ V
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEV 177
Query: 596 DEA 598
+A
Sbjct: 178 RKA 180
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F +++ F + + D + D + R +G+G V +A+VE+ A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S Q+ G IF+ G + ED
Sbjct: 74 ARPHKVDGRVVE-----------PKRAVSREDS-QRPGAHLTVKKIFVGG----IKEDTE 117
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++F G+I I + D +G +G A++ F D DS +K + + G++ V
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 596 DEA 598
+A
Sbjct: 178 RKA 180
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F +++ F + + D + D + R +G+G V +A+VE+ A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S Q+ G IF+ G + ED
Sbjct: 74 ARPHKVDGRVVE-----------PKRAVSREDS-QRPGAHLTVKKIFVGG----IKEDTE 117
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++F G+I I + D +G +G A++ F D DS +K + + G++ V
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 596 DEA 598
+A
Sbjct: 178 RKA 180
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F +++ F + + D + D + R +G+G V +A+VE+ A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S Q+ G IF+ G + ED
Sbjct: 74 ARPHKVDGRVVE-----------PKRAVSREDS-QRPGAHLTVKKIFVGG----IKEDTE 117
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++F G+I I + D +G +G A++ F D DS +K + + G++ V
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 596 DEA 598
+A
Sbjct: 178 RKA 180
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F +++ F + + D + D + R +G+G V +A+VE+ A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S Q+ G IF+ G + ED
Sbjct: 74 ARPHKVDGRVVE-----------PKRAVSREDS-QRPGAHLTVKKIFVGG----IKEDTE 117
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++F G+I I + D +G +G A++ F D DS +K + + G++ V
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 596 DEA 598
+A
Sbjct: 178 RKA 180
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++N++ + ++ D + D A R +G+G V F+S+ + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE ES AH K F + ED
Sbjct: 81 ARPHSIDGRVVEPKRAVARE-----------ESGK-------PGAHVTVKKLFVGGIKED 122
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L ++F G+I I + D +G +G ++ F D D +K + I G++
Sbjct: 123 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNA 182
Query: 594 VVDEAKQRGDFGSGGGRSGGRGGRSGGRDFGRSGGRDGGRFGGRGRGGRDGGRGGR 649
V +A R + GRGG G D GG G G RGG DG GR
Sbjct: 183 EVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR 238
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F ++ F + ++ D + D R +G+G V ++ VE+ ++
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S + G AH K F + ED
Sbjct: 87 ARPHKVDGRVVE-----------PKRAVSREDSARPG-----AHLTVKKIFVGGIKEDTE 130
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++ S G+I I V +D +G +G A++ F D D+ +K + I G++ V
Sbjct: 131 EYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 190
Query: 596 DEAKQRGDFGSGGGRSGGRGGRSGGRDF 623
+A + + + + GRGG GG +F
Sbjct: 191 KKALSKQEMQTASAQR-GRGG--GGSNF 215
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++N++ + ++ D + D A R +G+G V F+S+ + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE ES AH K F + ED
Sbjct: 81 ARPHSIDGRVVEPKRAVARE-----------ESGK-------PGAHVTVKKLFVGGIKED 122
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L ++F G+I I + D +G +G ++ F D D +K + I G++
Sbjct: 123 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 182
Query: 594 VVDEAKQRGDFGSGGGRSGGRGGRSGGRDFGRSGGRDGGRFGGRGRGGRDGGRGGR 649
V +A R + GRGG G D GG G G RGG DG GR
Sbjct: 183 EVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR 238
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++N++ + ++ D + D A R +G+G V F+S+ + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE ES AH K F + ED
Sbjct: 81 ARPHSIDGRVVEPKRAVARE-----------ESGK-------PGAHVTVKKLFVGGIKED 122
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L ++F G+I I + D +G +G ++ F D D +K + I G++
Sbjct: 123 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 182
Query: 594 VVDEAKQRGDFGSGGGRSGGRGGRSGGRDFGRSGGRDGGRFGGRGRGGRDGGRGGR 649
V +A R + GRGG G D GG G G RGG DG GR
Sbjct: 183 EVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR 238
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 21/236 (8%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++N++ + ++ D + D A R +G+G V F+S+ + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE ES AH K F + ED
Sbjct: 81 ARPHSIDGRVVEPKRAVARE-----------ESGK-------PGAHVTVKKLFVGGIKED 122
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L ++F G+I I + D +G +G ++ F D D +K I G++
Sbjct: 123 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNA 182
Query: 594 VVDEAKQRGDFGSGGGRSGGRGGRSGGRDFGRSGGRDGGRFGGRGRGGRDGGRGGR 649
V +A R + GRGG G D GG G G RGG DG GR
Sbjct: 183 EVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR 238
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F ++ F + ++ D + D R +G+G V ++ VE+ ++
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + P + +S + G AH K F + ED
Sbjct: 87 ARPHKVDGRVVE-----------PKRAVSREDSARPG-----AHLTVKKIFVGGIKEDTE 130
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L ++F G+I I V +D +G +G A++ F D D+ +K + I ++ V
Sbjct: 131 EYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEV 190
Query: 596 DEAKQRGDFGSGGGRSGGRGGRSGGRDF 623
+A + + + + GRGG GG +F
Sbjct: 191 KKALSKQEMQTASAQR-GRGG--GGSNF 215
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++N++ + ++ D + D A R +G+G V F+S+ + A+
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE ES AH K F + ED
Sbjct: 69 ARPHSIDGRVVEPKRAVARE-----------ESGK-------PGAHVTVKKLFVGGIKED 110
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L ++F G+I I + D +G +G ++ F D D +K + I G++
Sbjct: 111 TEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 170
Query: 594 VVDEAKQRGDFGSGGGRSGGRGGRSGGRDFGRSGGRDGGRFGGRGRGGRDGGRGGR 649
V +A R + GRGG G D GG G G RGG DG GR
Sbjct: 171 EVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR 226
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-ADGRFKGYGHVEFASVEDAHKAIE 475
+ LF+G L F + ++N++ + ++ D + D A R +G+G V F+S+ + A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 476 LNGQMLGNRAI--RLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533
+ R + + ARE ES AH K F + ED
Sbjct: 69 ARPHSIDGRVVEPKRAVARE-----------ESGK-------PGAHVTVKKLFVGGIKED 110
Query: 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593
L ++F G+I I + D +G +G ++ F D D +K + I G++
Sbjct: 111 TEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 170
Query: 594 VVDEAKQRGDFGSGGGRSGGRGGRSGGRDFGRSGGRDGGRFGGRGRGGRDGGRGGR 649
V +A R + GRGG G D GG G G RGG DG GR
Sbjct: 171 EVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGR 226
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 405 AQTPFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVE 463
+++P P+ + LF+G L F +++ F + + D + D + R +G+G V
Sbjct: 4 SESPKEPEQ--LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 464 FASVEDAHKAIELNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFI 523
+A+VE A+ + R + P + +S Q+ G IF+
Sbjct: 62 YATVEKVDAAMNARPHKVDGRVVE-----------PKRAVSREDS-QRPGAHLTVKKIFV 109
Query: 524 KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEM 583
G + ED L ++F G+I I + D +G +G A++ F D +S +K +
Sbjct: 110 GG----IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 165
Query: 584 SGTEIGGYSLVVDEA 598
+ G++ V +A
Sbjct: 166 KYHTVNGHNCEVRKA 180
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 420 FVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-LN 477
FVG L ++ ++ ++ FS+ E+VD ++ +D + GR +G+G V F + AIE +N
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 478 GQMLGNRAIRLD 489
GQ L R+I ++
Sbjct: 71 GQDLDGRSITVN 82
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596
SLE F GE+ + D +TG +G ++ F D S A+E M+G ++ G S+ V+
Sbjct: 23 SLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82
Query: 597 EAK 599
EA+
Sbjct: 83 EAQ 85
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 17/189 (8%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFASVEDAHKAIE 475
+ LF+G L + ++ F + +VDV + D R +G+G + ++ A
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ R + E P + N+ G +F+ G + +D
Sbjct: 84 ARPHKIDGRTV------EPKRAVPRQEIDSPNA------GATVKKLFVGG----LRDDHD 127
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595
L E+F G+I +++ D DTG +G A+++F D D +K + I +L V
Sbjct: 128 EECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDV 187
Query: 596 DEAKQRGDF 604
+A + D
Sbjct: 188 KKAIAKQDM 196
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/156 (17%), Positives = 64/156 (41%), Gaps = 28/156 (17%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE 475
+ LFVG L + + ++++ F + E+ + + +D GR +G+ + F + E K
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 476 LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535
+ ++ ++ + A+ R IF+ G + + ++++
Sbjct: 116 ADEHIINSKKVDPKKAKARHG-----------------------KIFVGGLTTEISDEEI 152
Query: 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571
+ +FG G I + +P D KG ++ F
Sbjct: 153 KT----YFGQFGNIVEVEMPFDKQKSQRKGFCFITF 184
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKA 580
+F+ G E ++R +HFG GEI I+V D TG +G A++ FT+ ++ +K
Sbjct: 58 LFVGGLSWETTEKELR----DHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 420 FVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI-ELN 477
FVG L ++ A+++ FS+ EV+D ++ +D + GR +G+G V F + AI E+N
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 478 GQMLGNRAIRLD 489
G+ L R I ++
Sbjct: 69 GKELDGRTITVN 80
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578
+ F+ G + G+ A LE F GE+ + D +TG +G ++ F D S
Sbjct: 6 YRCFVGGLAWATGD----AELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 579 KAL-EMSGTEIGGYSLVVDEAK 599
A+ EM+G E+ G ++ V+EA+
Sbjct: 62 DAIDEMNGKELDGRTITVNEAQ 83
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 420 FVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAI-ELN 477
FVG L ++ D+Q FS+ +V+D ++ +D + GR +G+G V F + AI E+N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 478 GQMLGNRAI 486
G+ L R I
Sbjct: 69 GKELDGRVI 77
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596
SLE+ F G+IT + D +TG +G ++ F D S A+E M+G E+ G ++ V+
Sbjct: 21 SLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVN 80
Query: 597 EAK 599
EA+
Sbjct: 81 EAQ 83
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-L 476
FVG L ++ ++ FS+ ++ D ++ +D + GR +G+G V F + AIE +
Sbjct: 8 CFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGM 67
Query: 477 NGQMLGNRAIRLD 489
NGQ L R I ++
Sbjct: 68 NGQELDGRNITVN 80
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 40.0 bits (92), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 420 FVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-LN 477
FVG L ++ + ++ FS+ EV+D ++ +D + GR +G+G V F + AIE +N
Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 478 GQMLGNRAIRLD 489
GQ L R+I ++
Sbjct: 71 GQDLDGRSITVN 82
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596
+LE F GE+ + D +TG +G ++ F D S A+E M+G ++ G S+ V+
Sbjct: 23 ALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82
Query: 597 EAK 599
EA+
Sbjct: 83 EAQ 85
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 38.5 bits (88), Expect = 0.20, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 420 FVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-GRFKGYGHVEFASVEDAHKAIE-LN 477
FVG L ++ ++N F+ E++D ++ +D + GR +G+G V F+S AIE +N
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 478 GQMLGNRAIRLDFAR 492
G+ L R I ++ A+
Sbjct: 71 GKELDGRNITVNQAQ 85
Score = 37.4 bits (85), Expect = 0.42, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 538 SLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596
SLE F S GEI V D +TG +G ++ F+ +S A+E M+G E+ G ++ V+
Sbjct: 23 SLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVN 82
Query: 597 EAK 599
+A+
Sbjct: 83 QAQ 85
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 83/181 (45%), Gaps = 29/181 (16%)
Query: 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG-RFKGYGHVEFAS---VEDAHK 472
+ LF+G L + +++ F + +VDV + D R +G+G + ++ +++A K
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 473 A--IELNGQML-GNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSS 529
+ +++G+++ RA+ P + N+ G +F+ +
Sbjct: 91 SRPHKIDGRVVEPKRAV------------PRQDIDSPNA------GATVKKLFV----GA 128
Query: 530 VGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIG 589
+ +D S+ ++F G I I++ D +TG +G A+++F D D +K + ++
Sbjct: 129 LKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLN 188
Query: 590 G 590
G
Sbjct: 189 G 189
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2
SV=2
Length = 399
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEIT--------RISVPKDYDTGSVKGIAYLDF 571
TIF+ G D S E + E HFG+ G I +I + K+ +TG+ KG A + +
Sbjct: 121 TIFVSGMDPSTTEQDI----ETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTY 176
Query: 572 TDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604
D ++ A+E G + G ++ V A+++ ++
Sbjct: 177 DDTNAAQSAIEWFDGRDFNGNAIKVSLAQRQNNW 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.298 0.120 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,872,179
Number of Sequences: 539616
Number of extensions: 14162003
Number of successful extensions: 289712
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3483
Number of HSP's successfully gapped in prelim test: 7394
Number of HSP's that attempted gapping in prelim test: 85435
Number of HSP's gapped (non-prelim): 82195
length of query: 675
length of database: 191,569,459
effective HSP length: 124
effective length of query: 551
effective length of database: 124,657,075
effective search space: 68686048325
effective search space used: 68686048325
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 65 (29.6 bits)