Query 045516
Match_columns 675
No_of_seqs 599 out of 2761
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.9E-34 1.3E-38 302.7 26.3 170 414-605 105-279 (346)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 9E-29 2E-33 275.6 28.4 179 414-604 56-310 (578)
3 TIGR01645 half-pint poly-U bin 100.0 5.1E-29 1.1E-33 277.8 21.8 180 414-604 105-287 (612)
4 KOG0148 Apoptosis-promoting RN 100.0 4E-28 8.6E-33 236.1 21.0 181 410-604 56-241 (321)
5 TIGR01622 SF-CC1 splicing fact 100.0 4.7E-27 1E-31 262.8 22.1 180 411-600 84-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.2E-26 2.5E-31 250.7 22.6 185 415-603 88-351 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.4E-27 1.8E-31 251.8 21.0 165 416-602 3-172 (352)
8 KOG0117 Heterogeneous nuclear 99.9 8.5E-26 1.8E-30 233.4 21.7 178 413-602 80-332 (506)
9 TIGR01628 PABP-1234 polyadenyl 99.9 2.5E-25 5.4E-30 255.0 24.8 183 414-601 176-364 (562)
10 KOG0131 Splicing factor 3b, su 99.9 4.6E-26 1E-30 210.3 12.1 171 414-605 7-181 (203)
11 TIGR01628 PABP-1234 polyadenyl 99.9 3.7E-25 8.1E-30 253.5 19.5 163 418-601 2-167 (562)
12 KOG0127 Nucleolar protein fibr 99.9 9.1E-25 2E-29 230.2 17.0 185 417-606 6-201 (678)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.9E-24 6.4E-29 243.4 21.2 180 413-601 172-375 (509)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.8E-24 1.5E-28 240.5 23.4 187 414-600 293-501 (509)
15 KOG0127 Nucleolar protein fibr 99.9 3.2E-24 7E-29 226.1 17.8 183 416-602 117-379 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.1E-22 4.7E-27 225.7 26.7 167 416-601 2-174 (481)
17 KOG0144 RNA-binding protein CU 99.9 6.9E-24 1.5E-28 218.3 13.0 169 414-604 32-209 (510)
18 KOG4205 RNA-binding protein mu 99.9 2E-23 4.4E-28 215.7 16.5 176 415-606 5-181 (311)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.7E-23 1.7E-27 229.2 21.6 178 414-601 273-480 (481)
20 KOG0145 RNA-binding protein EL 99.9 2.2E-23 4.8E-28 201.5 12.8 164 416-601 41-209 (360)
21 KOG0109 RNA-binding protein LA 99.9 8.9E-23 1.9E-27 200.8 14.9 152 417-607 3-156 (346)
22 TIGR01622 SF-CC1 splicing fact 99.9 6.6E-22 1.4E-26 221.2 22.4 181 416-600 186-447 (457)
23 KOG0145 RNA-binding protein EL 99.9 3.7E-22 8E-27 193.1 15.9 182 415-600 126-357 (360)
24 KOG0124 Polypyrimidine tract-b 99.9 1.1E-22 2.3E-27 204.8 11.0 176 415-601 112-290 (544)
25 KOG0110 RNA-binding protein (R 99.9 1.2E-21 2.7E-26 213.3 13.6 172 418-602 517-694 (725)
26 KOG0147 Transcriptional coacti 99.8 8.2E-22 1.8E-26 209.7 7.2 185 411-603 174-360 (549)
27 KOG0105 Alternative splicing f 99.8 4.5E-19 9.7E-24 164.0 18.0 163 414-589 4-176 (241)
28 KOG0123 Polyadenylate-binding 99.8 1.6E-19 3.4E-24 193.4 15.7 154 417-605 2-157 (369)
29 TIGR01645 half-pint poly-U bin 99.8 1.2E-18 2.6E-23 195.0 21.6 79 415-493 203-283 (612)
30 KOG0146 RNA-binding protein ET 99.8 3.4E-19 7.4E-24 173.3 7.8 189 413-605 16-369 (371)
31 KOG4211 Splicing factor hnRNP- 99.8 2.9E-17 6.3E-22 173.0 21.3 172 414-599 8-180 (510)
32 KOG0148 Apoptosis-promoting RN 99.8 2E-18 4.2E-23 168.8 11.3 141 414-604 4-145 (321)
33 KOG0123 Polyadenylate-binding 99.8 5.8E-18 1.3E-22 181.4 14.4 168 416-600 76-245 (369)
34 KOG0147 Transcriptional coacti 99.8 3.7E-18 8.1E-23 182.0 12.6 183 413-600 275-527 (549)
35 PLN03134 glycine-rich RNA-bind 99.8 1.8E-17 4E-22 155.1 15.8 84 517-604 33-117 (144)
36 KOG4206 Spliceosomal protein s 99.7 3.3E-17 7.1E-22 158.0 16.8 173 415-599 8-220 (221)
37 PLN03134 glycine-rich RNA-bind 99.7 2.3E-17 4.9E-22 154.5 14.6 82 413-494 31-114 (144)
38 KOG0144 RNA-binding protein CU 99.7 1.6E-17 3.4E-22 171.7 10.8 185 415-603 123-506 (510)
39 TIGR01648 hnRNP-R-Q heterogene 99.7 3E-16 6.5E-21 175.7 18.4 123 415-548 232-367 (578)
40 KOG0106 Alternative splicing f 99.7 1E-16 2.2E-21 156.2 11.2 160 417-595 2-165 (216)
41 KOG1548 Transcription elongati 99.7 1.5E-15 3.3E-20 153.6 18.5 184 413-600 131-351 (382)
42 KOG4212 RNA-binding protein hn 99.7 3.5E-15 7.6E-20 154.2 18.2 180 415-599 43-292 (608)
43 TIGR01659 sex-lethal sex-letha 99.6 5.6E-15 1.2E-19 157.6 16.9 80 415-494 192-275 (346)
44 COG0724 RNA-binding proteins ( 99.6 1.2E-14 2.6E-19 149.5 15.0 162 416-581 115-284 (306)
45 KOG4211 Splicing factor hnRNP- 99.6 9.6E-14 2.1E-18 146.7 20.8 179 415-599 102-356 (510)
46 KOG4207 Predicted splicing fac 99.6 2.6E-14 5.7E-19 134.9 12.1 81 518-602 13-94 (256)
47 PF00076 RRM_1: RNA recognitio 99.6 1.4E-14 3.1E-19 117.8 8.7 69 419-487 1-70 (70)
48 KOG0121 Nuclear cap-binding pr 99.6 7.6E-15 1.6E-19 128.5 7.3 79 414-492 34-114 (153)
49 KOG4210 Nuclear localization s 99.5 2.7E-14 5.8E-19 147.8 10.4 180 414-604 86-267 (285)
50 KOG0113 U1 small nuclear ribon 99.5 2.2E-13 4.7E-18 135.6 15.6 84 413-496 98-183 (335)
51 KOG0120 Splicing factor U2AF, 99.5 5.9E-14 1.3E-18 152.3 12.6 187 414-600 287-491 (500)
52 PLN03120 nucleic acid binding 99.5 4.5E-14 9.7E-19 141.4 10.6 77 416-494 4-80 (260)
53 KOG0107 Alternative splicing f 99.5 3E-13 6.4E-18 125.1 14.6 77 415-495 9-86 (195)
54 KOG0110 RNA-binding protein (R 99.5 1.3E-13 2.8E-18 151.2 13.6 178 413-599 382-596 (725)
55 KOG0117 Heterogeneous nuclear 99.5 1.3E-13 2.9E-18 143.7 11.7 76 415-497 258-334 (506)
56 KOG0124 Polypyrimidine tract-b 99.5 4.3E-13 9.3E-18 136.0 14.9 185 415-599 209-533 (544)
57 KOG0113 U1 small nuclear ribon 99.5 3.3E-13 7.1E-18 134.3 13.8 89 514-606 97-186 (335)
58 KOG1457 RNA binding protein (c 99.5 3.7E-13 8E-18 128.6 13.5 169 413-589 31-274 (284)
59 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 3.1E-18 112.4 8.8 69 419-487 1-70 (70)
60 KOG0149 Predicted RNA-binding 99.5 8.6E-14 1.9E-18 134.6 7.6 77 417-493 13-90 (247)
61 KOG0122 Translation initiation 99.5 1.8E-13 3.9E-18 132.8 9.5 81 414-494 187-269 (270)
62 KOG0107 Alternative splicing f 99.5 6.5E-13 1.4E-17 122.9 12.7 79 518-605 10-89 (195)
63 KOG4207 Predicted splicing fac 99.5 8.2E-14 1.8E-18 131.6 6.8 84 410-493 7-92 (256)
64 PLN03121 nucleic acid binding 99.5 2.8E-13 6.1E-18 133.5 10.4 77 415-493 4-80 (243)
65 KOG0126 Predicted RNA-binding 99.4 1.7E-14 3.7E-19 133.6 0.2 81 414-494 33-115 (219)
66 KOG0121 Nuclear cap-binding pr 99.4 3E-13 6.6E-18 118.5 7.4 79 517-599 35-114 (153)
67 KOG0105 Alternative splicing f 99.4 6E-13 1.3E-17 123.6 9.3 76 518-600 6-82 (241)
68 KOG0114 Predicted RNA-binding 99.4 1.8E-12 4E-17 109.5 9.5 80 413-494 15-95 (124)
69 PLN03213 repressor of silencin 99.4 8.9E-13 1.9E-17 138.3 9.4 76 415-493 9-87 (759)
70 KOG0125 Ataxin 2-binding prote 99.4 9.4E-13 2E-17 132.5 8.5 80 414-494 94-174 (376)
71 KOG1190 Polypyrimidine tract-b 99.4 1.1E-11 2.3E-16 128.1 16.3 173 416-600 297-490 (492)
72 KOG0130 RNA-binding protein RB 99.4 8.1E-13 1.7E-17 116.8 6.9 86 410-495 66-153 (170)
73 smart00362 RRM_2 RNA recogniti 99.4 3.2E-12 7E-17 103.3 9.4 71 418-489 1-72 (72)
74 KOG0116 RasGAP SH3 binding pro 99.4 4.9E-12 1.1E-16 136.1 13.1 76 416-491 288-364 (419)
75 KOG0129 Predicted RNA-binding 99.3 1.3E-11 2.8E-16 131.7 14.6 182 414-598 257-451 (520)
76 KOG1365 RNA-binding protein Fu 99.3 4.2E-12 9.1E-17 129.8 9.7 181 415-599 160-360 (508)
77 KOG0122 Translation initiation 99.3 3E-12 6.5E-17 124.4 8.2 80 518-601 189-269 (270)
78 PF00076 RRM_1: RNA recognitio 99.3 8E-12 1.7E-16 101.5 9.3 69 521-594 1-70 (70)
79 KOG0116 RasGAP SH3 binding pro 99.3 1.1E-11 2.5E-16 133.3 11.7 82 518-603 288-369 (419)
80 KOG1456 Heterogeneous nuclear 99.3 1.9E-10 4.1E-15 117.5 19.6 164 414-602 29-200 (494)
81 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4.1E-16 99.3 10.1 73 418-490 1-74 (74)
82 PF03546 Treacle: Treacher Col 99.3 7.4E-11 1.6E-15 125.7 17.0 35 209-244 199-233 (519)
83 KOG0120 Splicing factor U2AF, 99.3 8.6E-12 1.9E-16 135.6 9.7 183 413-604 172-372 (500)
84 smart00360 RRM RNA recognition 99.3 2.1E-11 4.5E-16 98.1 8.7 69 421-489 1-71 (71)
85 PLN03120 nucleic acid binding 99.3 1.5E-11 3.2E-16 123.5 9.2 76 518-600 4-79 (260)
86 KOG0111 Cyclophilin-type pepti 99.3 3.9E-12 8.4E-17 121.2 4.7 83 413-495 7-91 (298)
87 KOG0149 Predicted RNA-binding 99.2 2.5E-11 5.5E-16 117.7 9.2 79 518-600 12-90 (247)
88 KOG0108 mRNA cleavage and poly 99.2 2E-11 4.3E-16 132.2 8.5 78 417-494 19-98 (435)
89 PF14259 RRM_6: RNA recognitio 99.2 8.1E-11 1.8E-15 96.1 9.9 69 521-594 1-70 (70)
90 KOG0130 RNA-binding protein RB 99.2 3.3E-11 7.1E-16 106.7 7.7 87 515-605 69-156 (170)
91 KOG0114 Predicted RNA-binding 99.2 8.8E-11 1.9E-15 99.4 8.2 77 518-601 18-95 (124)
92 KOG4454 RNA binding protein (R 99.2 6.2E-12 1.4E-16 120.0 1.5 147 413-592 6-154 (267)
93 PF03546 Treacle: Treacher Col 99.2 2.5E-10 5.5E-15 121.7 13.6 37 119-155 4-40 (519)
94 KOG0111 Cyclophilin-type pepti 99.2 1.7E-11 3.6E-16 116.9 4.2 82 518-603 10-92 (298)
95 PLN03213 repressor of silencin 99.2 7E-11 1.5E-15 124.3 8.9 75 518-600 10-87 (759)
96 KOG0126 Predicted RNA-binding 99.2 7.9E-12 1.7E-16 116.2 1.3 77 518-598 35-112 (219)
97 PLN03121 nucleic acid binding 99.1 1.6E-10 3.4E-15 114.2 9.8 75 518-599 5-79 (243)
98 KOG1190 Polypyrimidine tract-b 99.1 6.8E-10 1.5E-14 114.9 14.9 172 416-600 150-372 (492)
99 KOG0125 Ataxin 2-binding prote 99.1 7.5E-11 1.6E-15 119.0 7.7 81 517-603 95-176 (376)
100 KOG4212 RNA-binding protein hn 99.1 3.6E-10 7.9E-15 117.5 12.5 80 517-600 43-123 (608)
101 KOG4208 Nucleolar RNA-binding 99.1 3E-10 6.4E-15 108.3 8.4 81 414-494 47-130 (214)
102 KOG4205 RNA-binding protein mu 99.1 6.2E-10 1.3E-14 115.8 10.6 85 415-499 96-181 (311)
103 PF13893 RRM_5: RNA recognitio 99.1 6.4E-10 1.4E-14 86.7 7.7 55 433-491 1-56 (56)
104 smart00362 RRM_2 RNA recogniti 99.0 7.9E-10 1.7E-14 89.2 8.6 71 520-596 1-72 (72)
105 COG0724 RNA-binding proteins ( 99.0 4.3E-10 9.3E-15 115.5 8.0 79 518-600 115-194 (306)
106 smart00361 RRM_1 RNA recogniti 99.0 8.9E-10 1.9E-14 90.1 8.0 59 430-488 2-69 (70)
107 KOG0146 RNA-binding protein ET 99.0 2.6E-10 5.7E-15 111.8 5.5 83 414-496 283-367 (371)
108 KOG0112 Large RNA-binding prot 99.0 2.2E-10 4.8E-15 128.8 4.6 159 413-601 369-531 (975)
109 smart00361 RRM_1 RNA recogniti 99.0 1.5E-09 3.2E-14 88.9 7.9 65 532-596 2-70 (70)
110 KOG0131 Splicing factor 3b, su 99.0 4E-10 8.7E-15 105.2 4.9 80 518-601 9-89 (203)
111 smart00360 RRM RNA recognition 99.0 1.4E-09 3E-14 87.3 7.5 70 523-596 1-71 (71)
112 KOG0128 RNA-binding protein SA 99.0 8E-11 1.7E-15 131.9 -0.3 148 414-600 665-814 (881)
113 KOG0108 mRNA cleavage and poly 99.0 9.1E-10 2E-14 119.4 7.7 84 519-606 19-103 (435)
114 KOG0109 RNA-binding protein LA 98.9 1.2E-09 2.6E-14 108.8 6.5 80 414-500 76-156 (346)
115 KOG1456 Heterogeneous nuclear 98.9 3.9E-08 8.4E-13 100.9 17.6 169 413-590 284-474 (494)
116 cd00590 RRM RRM (RNA recogniti 98.9 5.9E-09 1.3E-13 84.5 9.1 73 520-597 1-74 (74)
117 PF13893 RRM_5: RNA recognitio 98.9 4.1E-09 8.9E-14 82.1 7.4 55 539-598 1-56 (56)
118 KOG1365 RNA-binding protein Fu 98.9 4.9E-09 1.1E-13 107.7 9.3 183 413-598 57-240 (508)
119 KOG0415 Predicted peptidyl pro 98.9 2.4E-09 5.1E-14 108.9 6.7 82 415-496 238-321 (479)
120 KOG4206 Spliceosomal protein s 98.9 4.2E-09 9.1E-14 102.3 7.5 84 518-604 9-93 (221)
121 KOG0153 Predicted RNA-binding 98.9 5.2E-09 1.1E-13 106.8 8.0 76 413-493 225-302 (377)
122 KOG0132 RNA polymerase II C-te 98.9 5.3E-09 1.1E-13 116.1 8.4 80 414-498 419-499 (894)
123 KOG0533 RRM motif-containing p 98.8 1.4E-08 2.9E-13 101.9 8.7 79 416-494 83-162 (243)
124 KOG4209 Splicing factor RNPS1, 98.7 3.9E-08 8.4E-13 98.9 9.4 81 517-601 100-180 (231)
125 KOG0415 Predicted peptidyl pro 98.7 2.1E-08 4.7E-13 102.1 6.6 83 514-600 235-318 (479)
126 KOG4208 Nucleolar RNA-binding 98.7 3.6E-08 7.8E-13 94.3 7.1 81 517-601 48-130 (214)
127 KOG0226 RNA-binding proteins [ 98.7 1.6E-08 3.5E-13 99.2 4.5 168 415-598 95-267 (290)
128 KOG4661 Hsp27-ERE-TATA-binding 98.7 4E-08 8.6E-13 105.3 7.6 81 413-493 402-484 (940)
129 KOG4676 Splicing factor, argin 98.7 1.3E-08 2.8E-13 105.0 3.9 166 416-589 7-214 (479)
130 KOG2193 IGF-II mRNA-binding pr 98.6 5.3E-09 1.2E-13 108.6 0.3 154 417-603 2-159 (584)
131 KOG4209 Splicing factor RNPS1, 98.6 1E-07 2.2E-12 95.9 8.0 82 413-494 98-180 (231)
132 KOG1995 Conserved Zn-finger pr 98.6 1.6E-07 3.6E-12 96.9 9.0 84 517-604 65-157 (351)
133 KOG0153 Predicted RNA-binding 98.6 1.4E-07 3.1E-12 96.4 7.6 75 516-600 226-302 (377)
134 KOG0533 RRM motif-containing p 98.6 4.4E-07 9.6E-12 91.1 11.0 81 518-603 83-164 (243)
135 KOG4660 Protein Mei2, essentia 98.5 3.8E-08 8.2E-13 106.5 3.5 172 413-600 72-249 (549)
136 KOG1995 Conserved Zn-finger pr 98.5 6.4E-07 1.4E-11 92.6 10.2 83 413-495 63-155 (351)
137 KOG4307 RNA binding protein RB 98.4 5.3E-07 1.1E-11 99.2 8.3 179 413-597 308-510 (944)
138 KOG0132 RNA polymerase II C-te 98.4 4.6E-07 9.9E-12 101.1 6.8 76 517-602 420-496 (894)
139 KOG0151 Predicted splicing reg 98.4 3.8E-07 8.2E-12 100.7 6.0 79 415-493 173-256 (877)
140 KOG2202 U2 snRNP splicing fact 98.4 1E-06 2.2E-11 87.2 8.3 62 431-492 83-146 (260)
141 KOG4307 RNA binding protein RB 98.3 5.5E-06 1.2E-10 91.4 13.7 80 413-492 431-512 (944)
142 PF04059 RRM_2: RNA recognitio 98.3 4.2E-06 9.1E-11 72.3 9.3 78 417-494 2-87 (97)
143 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.1E-06 2.5E-11 94.4 6.7 82 516-601 403-485 (940)
144 KOG0226 RNA-binding proteins [ 98.2 1.3E-06 2.8E-11 86.0 4.4 80 414-493 188-269 (290)
145 PF04059 RRM_2: RNA recognitio 98.2 1E-05 2.3E-10 69.9 9.3 81 519-601 2-87 (97)
146 PF11608 Limkain-b1: Limkain b 98.2 9.4E-06 2E-10 66.9 8.0 74 518-601 2-77 (90)
147 KOG1548 Transcription elongati 98.1 4.7E-06 1E-10 85.5 6.9 78 518-600 134-220 (382)
148 KOG4849 mRNA cleavage factor I 98.1 1.7E-05 3.7E-10 81.0 10.7 82 408-489 72-157 (498)
149 KOG1457 RNA binding protein (c 98.0 2.4E-05 5.2E-10 75.7 9.1 83 518-604 34-121 (284)
150 KOG0106 Alternative splicing f 98.0 7.3E-06 1.6E-10 80.7 4.9 72 519-602 2-74 (216)
151 KOG2202 U2 snRNP splicing fact 98.0 2.1E-05 4.6E-10 78.0 7.9 53 545-598 92-145 (260)
152 PF11608 Limkain-b1: Limkain b 97.9 3E-05 6.4E-10 64.0 7.0 69 417-494 3-77 (90)
153 KOG4210 Nuclear localization s 97.9 8.6E-06 1.9E-10 84.8 4.5 82 414-495 182-265 (285)
154 KOG4660 Protein Mei2, essentia 97.9 7.8E-06 1.7E-10 88.9 3.8 69 517-594 74-143 (549)
155 KOG3973 Uncharacterized conser 97.9 3.1E-05 6.6E-10 79.3 7.3 10 421-430 154-163 (465)
156 KOG0151 Predicted splicing reg 97.8 3.4E-05 7.4E-10 85.7 6.1 79 517-599 173-255 (877)
157 KOG0128 RNA-binding protein SA 97.8 2.1E-06 4.5E-11 97.2 -3.4 165 414-590 569-735 (881)
158 KOG1855 Predicted RNA-binding 97.7 0.00011 2.5E-09 77.4 8.6 78 414-491 229-321 (484)
159 COG5175 MOT2 Transcriptional r 97.7 3.8E-05 8.3E-10 78.3 4.8 79 416-494 114-203 (480)
160 PF08777 RRM_3: RNA binding mo 97.6 0.00014 3.1E-09 64.2 7.0 68 417-489 2-75 (105)
161 KOG4454 RNA binding protein (R 97.6 2.3E-05 5E-10 75.7 1.9 76 518-599 9-85 (267)
162 PRK11634 ATP-dependent RNA hel 97.6 0.00029 6.3E-09 81.9 10.5 74 519-601 487-563 (629)
163 KOG1855 Predicted RNA-binding 97.6 0.00018 3.9E-09 76.0 7.7 65 516-584 229-306 (484)
164 KOG4849 mRNA cleavage factor I 97.5 0.0002 4.3E-09 73.5 6.5 77 518-596 80-157 (498)
165 COG5175 MOT2 Transcriptional r 97.3 0.00037 8E-09 71.3 6.0 83 518-600 114-202 (480)
166 KOG3152 TBP-binding protein, a 97.3 0.00028 6E-09 70.0 4.8 71 415-485 73-157 (278)
167 PF08952 DUF1866: Domain of un 97.3 0.0013 2.8E-08 60.8 8.7 79 514-600 23-106 (146)
168 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0008 1.7E-08 58.7 6.9 76 415-491 5-89 (100)
169 KOG2314 Translation initiation 97.2 0.00072 1.6E-08 73.7 7.3 79 414-492 56-142 (698)
170 PF08777 RRM_3: RNA binding mo 97.2 0.0012 2.6E-08 58.4 7.2 69 519-597 2-76 (105)
171 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00076 1.6E-08 51.8 5.1 52 417-474 2-53 (53)
172 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0012 2.7E-08 57.4 6.6 76 518-598 6-89 (100)
173 KOG2416 Acinus (induces apopto 97.0 0.00047 1E-08 75.5 3.9 77 412-493 440-521 (718)
174 KOG2314 Translation initiation 97.0 0.0021 4.5E-08 70.2 8.0 79 518-597 58-140 (698)
175 KOG0115 RNA-binding protein p5 96.9 0.0022 4.8E-08 63.8 7.2 101 470-600 7-113 (275)
176 PF08952 DUF1866: Domain of un 96.9 0.0026 5.6E-08 58.8 6.7 71 416-493 27-106 (146)
177 PRK11634 ATP-dependent RNA hel 96.9 0.011 2.3E-07 69.0 13.3 60 425-492 496-561 (629)
178 KOG0129 Predicted RNA-binding 96.8 0.004 8.7E-08 67.8 8.2 63 413-475 367-431 (520)
179 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0038 8.3E-08 47.9 5.0 52 519-581 2-53 (53)
180 KOG1996 mRNA splicing factor [ 96.6 0.0041 9E-08 62.8 6.1 82 518-599 281-365 (378)
181 KOG4676 Splicing factor, argin 96.4 0.0047 1E-07 64.8 5.7 77 518-598 7-86 (479)
182 PF05918 API5: Apoptosis inhib 96.3 0.0011 2.3E-08 74.6 0.0 7 593-599 457-463 (556)
183 KOG2416 Acinus (induces apopto 96.2 0.0038 8.1E-08 68.7 3.6 77 514-599 440-520 (718)
184 KOG1996 mRNA splicing factor [ 96.2 0.012 2.5E-07 59.6 6.8 76 417-492 282-365 (378)
185 KOG0112 Large RNA-binding prot 96.1 0.0061 1.3E-07 70.2 5.1 79 413-496 452-533 (975)
186 KOG3152 TBP-binding protein, a 96.1 0.003 6.5E-08 62.9 2.2 71 518-592 74-157 (278)
187 KOG2253 U1 snRNP complex, subu 95.2 0.013 2.9E-07 65.6 3.3 118 411-536 35-153 (668)
188 KOG3262 H/ACA small nucleolar 95.1 0.1 2.3E-06 49.5 8.2 8 547-554 99-106 (215)
189 PRK10590 ATP-dependent RNA hel 94.9 0.23 4.9E-06 55.9 12.2 9 520-528 316-324 (456)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 94.9 0.023 4.9E-07 55.2 3.5 68 415-482 6-81 (176)
191 KOG0115 RNA-binding protein p5 94.9 0.027 6E-07 56.3 4.0 75 417-491 32-111 (275)
192 KOG4285 Mitotic phosphoprotein 94.6 0.047 1E-06 55.8 5.0 73 416-494 197-270 (350)
193 KOG2068 MOT2 transcription fac 94.5 0.015 3.2E-07 60.5 1.2 79 416-494 77-163 (327)
194 KOG4285 Mitotic phosphoprotein 94.3 0.095 2.1E-06 53.6 6.4 72 518-600 197-269 (350)
195 KOG2135 Proteins containing th 94.3 0.021 4.6E-07 61.5 1.8 77 414-495 370-447 (526)
196 KOG2318 Uncharacterized conser 94.3 0.26 5.5E-06 54.8 9.9 126 413-597 171-302 (650)
197 PF08675 RNA_bind: RNA binding 94.0 0.19 4E-06 42.0 6.4 53 417-477 10-63 (87)
198 PF15023 DUF4523: Protein of u 93.5 0.37 8E-06 44.2 7.8 79 513-599 81-160 (166)
199 PRK06958 single-stranded DNA-b 93.4 0.22 4.7E-06 48.4 6.8 8 417-424 6-13 (182)
200 PF07576 BRAP2: BRCA1-associat 93.0 0.69 1.5E-05 41.2 8.9 68 414-482 11-80 (110)
201 KOG2295 C2H2 Zn-finger protein 92.9 0.14 3.1E-06 56.3 5.2 70 415-484 230-301 (648)
202 PF05918 API5: Apoptosis inhib 92.8 0.031 6.6E-07 63.1 0.0 9 465-473 331-339 (556)
203 PF10567 Nab6_mRNP_bdg: RNA-re 92.8 2.6 5.7E-05 43.4 13.6 166 415-582 14-209 (309)
204 PF10309 DUF2414: Protein of u 92.8 0.51 1.1E-05 37.3 6.8 52 417-475 6-60 (62)
205 KOG2135 Proteins containing th 92.6 0.082 1.8E-06 57.2 2.8 75 518-601 372-446 (526)
206 PF07292 NID: Nmi/IFP 35 domai 92.4 0.081 1.8E-06 44.9 2.0 76 460-544 1-78 (88)
207 PF15023 DUF4523: Protein of u 92.2 0.51 1.1E-05 43.3 7.0 72 415-492 85-160 (166)
208 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.42 9E-06 46.4 6.8 79 518-599 7-96 (176)
209 PF04847 Calcipressin: Calcipr 91.9 0.33 7.2E-06 47.4 5.9 60 429-493 8-70 (184)
210 KOG2591 c-Mpl binding protein, 91.0 0.41 8.9E-06 52.9 5.9 73 413-491 172-249 (684)
211 KOG3262 H/ACA small nucleolar 90.6 0.63 1.4E-05 44.3 6.0 13 461-473 82-94 (215)
212 KOG2068 MOT2 transcription fac 90.3 0.12 2.5E-06 54.1 1.0 82 518-600 77-162 (327)
213 PRK10590 ATP-dependent RNA hel 90.2 0.74 1.6E-05 51.7 7.5 8 564-571 342-349 (456)
214 PF04847 Calcipressin: Calcipr 89.8 0.65 1.4E-05 45.3 5.7 63 533-601 6-71 (184)
215 KOG0804 Cytoplasmic Zn-finger 89.6 0.81 1.8E-05 49.5 6.6 67 416-483 74-142 (493)
216 KOG4574 RNA-binding protein (c 87.9 0.56 1.2E-05 54.3 4.3 79 417-500 299-380 (1007)
217 PF10309 DUF2414: Protein of u 85.7 4.5 9.7E-05 32.0 7.1 56 518-582 5-60 (62)
218 PF03880 DbpA: DbpA RNA bindin 84.4 4.1 8.9E-05 33.4 6.8 58 426-491 11-74 (74)
219 KOG2193 IGF-II mRNA-binding pr 84.3 0.56 1.2E-05 50.1 1.9 75 519-603 2-78 (584)
220 KOG2253 U1 snRNP complex, subu 84.2 0.73 1.6E-05 52.2 2.8 69 516-597 38-107 (668)
221 KOG2591 c-Mpl binding protein, 82.9 2.7 5.9E-05 46.7 6.4 65 518-593 175-244 (684)
222 PHA00370 III attachment protei 82.9 5.9 0.00013 39.9 8.1 7 590-596 72-78 (297)
223 PF11767 SET_assoc: Histone ly 82.1 4.5 9.8E-05 32.5 5.8 54 427-488 11-65 (66)
224 PF07576 BRAP2: BRCA1-associat 81.6 7.9 0.00017 34.5 7.8 67 518-590 13-81 (110)
225 PF14111 DUF4283: Domain of un 81.0 1.3 2.8E-05 41.5 2.8 121 418-557 17-140 (153)
226 PF03880 DbpA: DbpA RNA bindin 79.3 8.6 0.00019 31.4 6.9 62 528-598 11-74 (74)
227 PF04094 DUF390: Protein of un 77.2 4.1 8.8E-05 46.8 5.6 19 526-544 7-25 (828)
228 KOG0804 Cytoplasmic Zn-finger 74.9 6.8 0.00015 42.7 6.3 68 518-590 74-142 (493)
229 PF08675 RNA_bind: RNA binding 73.3 18 0.00038 30.5 7.0 53 519-584 10-63 (87)
230 PRK04537 ATP-dependent RNA hel 73.2 33 0.00072 39.8 12.1 16 460-475 260-275 (572)
231 KOG4213 RNA-binding protein La 72.2 3.3 7.2E-05 39.5 2.9 68 416-487 111-180 (205)
232 COG4907 Predicted membrane pro 70.0 6.7 0.00015 42.8 4.9 10 548-557 505-514 (595)
233 KOG3293 Small nuclear ribonucl 69.6 8.4 0.00018 34.2 4.6 6 484-489 13-18 (134)
234 KOG4574 RNA-binding protein (c 69.1 3.3 7.1E-05 48.3 2.5 79 519-607 299-380 (1007)
235 COG5193 LHP1 La protein, small 68.6 2.1 4.6E-05 45.8 0.9 61 415-475 173-244 (438)
236 KOG1295 Nonsense-mediated deca 66.9 4.6 0.0001 43.2 2.9 67 416-482 7-78 (376)
237 KOG3293 Small nuclear ribonucl 65.3 11 0.00023 33.6 4.4 13 477-489 21-33 (134)
238 KOG4483 Uncharacterized conser 65.2 10 0.00022 40.7 4.9 65 415-485 390-455 (528)
239 KOG2044 5'-3' exonuclease HKE1 62.4 16 0.00034 42.8 6.2 25 414-440 665-689 (931)
240 KOG2295 C2H2 Zn-finger protein 60.6 25 0.00054 39.5 7.1 12 570-581 520-531 (648)
241 PF11767 SET_assoc: Histone ly 59.0 31 0.00067 27.7 5.7 54 529-595 11-65 (66)
242 PF15513 DUF4651: Domain of un 58.9 19 0.00041 28.4 4.3 20 431-450 9-28 (62)
243 KOG4019 Calcineurin-mediated s 58.7 9.9 0.00021 36.6 3.3 78 518-601 10-90 (193)
244 PF04959 ARS2: Arsenite-resist 54.2 4.4 9.6E-05 40.5 0.1 7 583-589 115-121 (214)
245 KOG2044 5'-3' exonuclease HKE1 53.8 36 0.00079 40.0 7.2 18 457-474 631-648 (931)
246 PF03276 Gag_spuma: Spumavirus 53.7 82 0.0018 35.6 9.7 14 581-594 423-436 (582)
247 PF12343 DEADboxA: Cold shock 53.0 54 0.0012 25.4 5.7 8 667-674 55-62 (63)
248 KOG4008 rRNA processing protei 52.7 14 0.00031 37.0 3.3 34 414-447 38-71 (261)
249 PTZ00071 40S ribosomal protein 51.7 1E+02 0.0022 28.4 8.4 49 529-578 35-85 (132)
250 PF07530 PRE_C2HC: Associated 48.9 41 0.00088 27.2 4.9 62 534-602 3-66 (68)
251 KOG1295 Nonsense-mediated deca 47.9 16 0.00036 39.1 3.2 69 518-589 7-78 (376)
252 COG5638 Uncharacterized conser 47.7 59 0.0013 35.2 7.1 40 413-452 143-187 (622)
253 KOG4410 5-formyltetrahydrofola 47.5 49 0.0011 34.1 6.3 49 415-468 329-378 (396)
254 PF03468 XS: XS domain; Inter 45.4 25 0.00053 31.7 3.5 58 418-477 10-77 (116)
255 PRK07772 single-stranded DNA-b 45.4 61 0.0013 31.7 6.5 13 415-427 4-16 (186)
256 KOG4019 Calcineurin-mediated s 42.2 18 0.00039 34.9 2.2 73 417-494 11-90 (193)
257 smart00596 PRE_C2HC PRE_C2HC d 41.9 34 0.00074 27.7 3.4 55 545-601 10-65 (69)
258 KOG2891 Surface glycoprotein [ 41.3 27 0.00059 35.6 3.4 66 416-481 149-247 (445)
259 COG1512 Beta-propeller domains 41.2 38 0.00081 35.2 4.5 6 434-439 84-89 (271)
260 COG0030 KsgA Dimethyladenosine 41.1 2.4E+02 0.0052 29.2 10.3 33 416-448 95-127 (259)
261 KOG0943 Predicted ubiquitin-pr 39.9 1.1E+02 0.0024 37.9 8.3 27 519-545 4-31 (3015)
262 TIGR02542 B_forsyth_147 Bacter 39.7 75 0.0016 28.3 5.4 116 424-574 11-129 (145)
263 smart00596 PRE_C2HC PRE_C2HC d 37.9 52 0.0011 26.6 3.8 61 431-493 2-64 (69)
264 PF07530 PRE_C2HC: Associated 37.3 68 0.0015 25.9 4.5 62 431-494 2-65 (68)
265 PF03468 XS: XS domain; Inter 37.2 32 0.0007 30.9 2.9 44 539-585 34-78 (116)
266 PF00398 RrnaAD: Ribosomal RNA 36.5 1.9E+02 0.0042 29.7 9.1 102 415-545 96-212 (262)
267 KOG4365 Uncharacterized conser 36.3 6.8 0.00015 42.4 -1.8 77 416-493 3-81 (572)
268 PF03276 Gag_spuma: Spumavirus 36.1 97 0.0021 35.0 6.9 10 478-487 427-436 (582)
269 PRK01178 rps24e 30S ribosomal 34.1 2.7E+02 0.0059 24.3 8.0 50 529-579 30-80 (99)
270 PRK06341 single-stranded DNA-b 33.7 75 0.0016 30.5 5.0 8 417-424 7-14 (166)
271 PF05110 AF-4: AF-4 proto-onco 33.7 64 0.0014 40.5 5.6 10 564-573 1029-1038(1191)
272 PHA03264 envelope glycoprotein 33.4 2.8E+02 0.006 30.1 9.4 25 557-581 218-242 (416)
273 PTZ00338 dimethyladenosine tra 31.8 3.1E+02 0.0067 28.9 9.8 49 418-481 103-151 (294)
274 PRK00274 ksgA 16S ribosomal RN 29.8 3.3E+02 0.0071 28.2 9.5 23 417-439 106-128 (272)
275 TIGR00755 ksgA dimethyladenosi 29.7 3.1E+02 0.0068 27.9 9.3 24 418-441 96-119 (253)
276 PF09707 Cas_Cas2CT1978: CRISP 29.5 1E+02 0.0022 26.2 4.5 47 417-465 26-72 (86)
277 PF14893 PNMA: PNMA 29.4 50 0.0011 35.4 3.3 56 517-574 17-72 (331)
278 PRK10864 putative methyltransf 29.0 1.5E+02 0.0033 32.0 6.9 6 593-598 12-17 (346)
279 COG5213 FIP1 Polyadenylation f 28.3 99 0.0021 30.8 4.8 10 566-575 144-153 (266)
280 KOG3580 Tight junction protein 28.3 3.3E+02 0.0072 31.3 9.3 37 518-557 61-97 (1027)
281 cd04908 ACT_Bt0572_1 N-termina 27.8 2.9E+02 0.0063 21.4 8.1 49 429-480 14-63 (66)
282 KOG3172 Small nuclear ribonucl 27.6 1.3E+02 0.0028 26.3 4.8 13 583-595 58-70 (119)
283 cd00874 RNA_Cyclase_Class_II R 26.5 3E+02 0.0066 29.5 8.7 51 519-572 187-238 (326)
284 COG5193 LHP1 La protein, small 26.4 30 0.00065 37.4 1.0 65 518-582 174-244 (438)
285 KOG0156 Cytochrome P450 CYP2 s 26.2 1.1E+02 0.0023 34.8 5.5 63 416-486 32-97 (489)
286 cd04908 ACT_Bt0572_1 N-termina 25.7 3E+02 0.0065 21.3 6.6 46 539-588 18-64 (66)
287 KOG4365 Uncharacterized conser 25.4 17 0.00037 39.5 -1.0 77 518-599 3-80 (572)
288 PF05189 RTC_insert: RNA 3'-te 25.2 1E+02 0.0022 26.8 4.0 48 418-465 12-65 (103)
289 PF14026 DUF4242: Protein of u 24.6 4E+02 0.0087 21.9 8.4 62 419-481 3-71 (77)
290 KOG3424 40S ribosomal protein 24.2 2.3E+02 0.0051 25.4 5.9 50 529-579 34-84 (132)
291 KOG3172 Small nuclear ribonucl 23.0 1E+02 0.0022 26.9 3.3 8 441-448 15-22 (119)
292 PF04285 DUF444: Protein of un 22.6 2.2E+02 0.0047 31.7 6.7 7 590-596 49-55 (421)
293 PF05110 AF-4: AF-4 proto-onco 22.2 1.4E+02 0.0031 37.5 5.8 17 567-583 999-1016(1191)
294 PF00403 HMA: Heavy-metal-asso 21.2 3.7E+02 0.0081 20.4 6.2 53 418-475 1-57 (62)
295 TIGR03399 RNA_3prim_cycl RNA 3 21.1 8.4E+02 0.018 26.1 10.7 52 519-572 189-240 (326)
296 PTZ00473 Plasmodium Vir superf 20.6 2.5E+02 0.0055 30.6 6.5 20 655-674 388-407 (420)
297 KOG4410 5-formyltetrahydrofola 20.4 1.2E+02 0.0025 31.5 3.7 48 518-574 330-377 (396)
298 cd00875 RNA_Cyclase_Class_I RN 20.2 6.8E+02 0.015 27.0 9.9 53 519-572 190-244 (341)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.9e-34 Score=302.68 Aligned_cols=170 Identities=25% Similarity=0.494 Sum_probs=153.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+++|+++|++||..||.|+.|+|+++. +++++|||||+|.+.++|.+||. ||++.|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 457899999999999999999999999999999999997 89999999999999999999997 9999999999999987
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
..... ....++|||.|||..+++++ |+++|..||.|..|.|+++..+|.++|||||+|
T Consensus 185 ~p~~~------------------~~~~~~lfV~nLp~~vtee~----L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F 242 (346)
T TIGR01659 185 RPGGE------------------SIKDTNLYVTNLPRTITDDQ----LDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRF 242 (346)
T ss_pred ccccc------------------ccccceeEEeCCCCcccHHH----HHHHHHhcCCEEEEEEeecCCCCccceEEEEEE
Confidence 64321 11256899999999999998 778999999999999999999999999999999
Q ss_pred CCHHHHHHHHH-hCCceeCC--eeeEEeccccCCCCC
Q 045516 572 TDADSFNKALE-MSGTEIGG--YSLVVDEAKQRGDFG 605 (675)
Q Consensus 572 ~~~e~A~~Al~-lng~~~~G--r~l~V~~a~~r~~~~ 605 (675)
.+.++|.+||. ||+..|.+ +.|+|.++..+....
T Consensus 243 ~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 243 NKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCHHHHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 99999999998 99999866 789999998765443
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=9e-29 Score=275.62 Aligned_cols=179 Identities=21% Similarity=0.413 Sum_probs=141.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC-CeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG-NRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~-gr~i~V~~a 491 (675)
...++|||+|||+++++++|+++|.+||.|..|+|+++.+|+++|||||+|.+.++|.+||+ ||+..|. |+.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 34689999999999999999999999999999999999999999999999999999999998 9998885 676655543
Q ss_pred cccCC---------------------C-----------CC----CCCCC------------------CCCC---------
Q 045516 492 RERGA---------------------Y-----------TP----YSGGN------------------ESNS--------- 508 (675)
Q Consensus 492 ~~~~~---------------------~-----------~~----~~~~~------------------~~~~--------- 508 (675)
..... . .+ ...+. ....
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 21100 0 00 00000 0000
Q ss_pred --ccC------CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhccc--CcEEEEEecccCCCCCeeeEEEEEeCCHHHHH
Q 045516 509 --FQK------GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSC--GEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578 (675)
Q Consensus 509 --~~~------~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~--G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~ 578 (675)
+.. .......++|||+||+..+++++ |+++|..| |.|.+|.+++ +||||+|.+.++|.
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~----L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~ 283 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEI----IEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAV 283 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHH----HHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHH
Confidence 000 00112357899999999999998 78889999 9999998754 59999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 579 KALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 579 ~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
+||. ||+..|+|+.|+|.|++++...
T Consensus 284 kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 284 KAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9998 9999999999999999886543
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=5.1e-29 Score=277.78 Aligned_cols=180 Identities=23% Similarity=0.434 Sum_probs=154.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+.+++++|+++|..||.|.+|+|++++ +|+++|||||+|.+.++|.+||. |||+.|.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999997 89999999999999999999997 9999999999999864
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
.......+.. ..+. ......++|||+||+..+++++ |+++|..||.|..|+|+++..+|.++|||||+|
T Consensus 185 ~~~p~a~~~~-----~~~~--~~~~~~~rLfVgnLp~~vteed----Lk~lFs~FG~I~svrl~~D~~tgksKGfGFVeF 253 (612)
T TIGR01645 185 SNMPQAQPII-----DMVQ--EEAKKFNRIYVASVHPDLSETD----IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEY 253 (612)
T ss_pred cccccccccc-----cccc--ccccccceEEeecCCCCCCHHH----HHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEE
Confidence 4321111100 0000 1112357999999999999998 778999999999999999999999999999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 572 TDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 572 ~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
.+.++|..||. ||+..|+|+.|+|.++......
T Consensus 254 e~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 254 NNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999998 9999999999999999865443
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4e-28 Score=236.13 Aligned_cols=181 Identities=30% Similarity=0.507 Sum_probs=156.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 410 ~~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
++..+.+..|||+.|...++.+.|++.|.+||+|.+++|++|. +++++||+||.|.+.++|++||. |||..|++|.|+
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 3345568899999999999999999999999999999999998 99999999999999999999997 999999999999
Q ss_pred EEeccccCCCCCCCCCCCCCCcc--CCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeee
Q 045516 488 LDFARERGAYTPYSGGNESNSFQ--KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKG 565 (675)
Q Consensus 488 V~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG 565 (675)
-.|+.++....... ...|. -....+..++|||+||+..++++. |+++|..||.|..|||+++ +|
T Consensus 136 TNWATRKp~e~n~~----~ltfdeV~NQssp~NtsVY~G~I~~~lte~~----mr~~Fs~fG~I~EVRvFk~------qG 201 (321)
T KOG0148|consen 136 TNWATRKPSEMNGK----PLTFDEVYNQSSPDNTSVYVGNIASGLTEDL----MRQTFSPFGPIQEVRVFKD------QG 201 (321)
T ss_pred ccccccCccccCCC----CccHHHHhccCCCCCceEEeCCcCccccHHH----HHHhcccCCcceEEEEecc------cc
Confidence 99998776211110 11111 111344589999999999999987 8899999999999999998 79
Q ss_pred EEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 566 IAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 566 ~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
|+||.|.+.+.|.+||. ||+..|.|+.++|.|.+.....
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999997 9999999999999999865443
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=4.7e-27 Score=262.77 Aligned_cols=180 Identities=29% Similarity=0.467 Sum_probs=155.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEE
Q 045516 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLD 489 (675)
Q Consensus 411 ~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~ 489 (675)
......++|||+|||+.+++++|++||..||.|..|+|+.+. +++++|||||+|.+.++|.+||.|||..|.|++|.|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 334567899999999999999999999999999999999997 8999999999999999999999999999999999998
Q ss_pred eccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEE
Q 045516 490 FARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYL 569 (675)
Q Consensus 490 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV 569 (675)
+............ .......+..++|||+||++.+++++ |+++|..||.|..|.|+++..+|.++|||||
T Consensus 164 ~~~~~~~~~~~~~------~~~~~~~p~~~~l~v~nl~~~~te~~----l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV 233 (457)
T TIGR01622 164 SSQAEKNRAAKAA------THQPGDIPNFLKLYVGNLHFNITEQE----LRQIFEPFGDIEDVQLHRDPETGRSKGFGFI 233 (457)
T ss_pred ecchhhhhhhhcc------cccCCCCCCCCEEEEcCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 8654322111100 00011122368999999999999998 7788999999999999999999999999999
Q ss_pred EeCCHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 570 DFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 570 ~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
+|.+.+.|..||. |||..|.|+.|.|.|+..
T Consensus 234 ~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 234 QFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999998 999999999999999863
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1.2e-26 Score=250.75 Aligned_cols=185 Identities=24% Similarity=0.416 Sum_probs=151.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~~ 490 (675)
..++|||+|||+.+++++|+.+|..||.|..++|+.+. ++.++|||||+|.+.++|..||. |||..+.| ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999887 78999999999999999999997 99999987 6688888
Q ss_pred ccccCCCCCC--------------CCCCCC--------------------------------------------C-----
Q 045516 491 ARERGAYTPY--------------SGGNES--------------------------------------------N----- 507 (675)
Q Consensus 491 a~~~~~~~~~--------------~~~~~~--------------------------------------------~----- 507 (675)
+......... ...... .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7543211000 000000 0
Q ss_pred -------Cc----cCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHH
Q 045516 508 -------SF----QKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADS 576 (675)
Q Consensus 508 -------~~----~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~ 576 (675)
.+ ..........+|||+|||+.+++++ |+++|++||.|.+|+|+++..||.++|||||+|.+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~----L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETV----LWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 00 0000011234799999999999998 77899999999999999999999999999999999999
Q ss_pred HHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 577 FNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 577 A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
|..||. |||..|+||.|+|.|...+..
T Consensus 324 A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 324 AAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999998 999999999999999987653
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=8.4e-27 Score=251.83 Aligned_cols=165 Identities=28% Similarity=0.541 Sum_probs=149.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
.++|||+|||+.+++++|++||..||+|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|.|+.|+|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5799999999999999999999999999999999997 89999999999999999999997 999999999999999865
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
.... ....+|||+|||..+++++ |+.+|..||.|..+.|+.+..++.++|||||+|.+
T Consensus 83 ~~~~------------------~~~~~l~v~~l~~~~~~~~----l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~ 140 (352)
T TIGR01661 83 SSDS------------------IKGANLYVSGLPKTMTQHE----LESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDK 140 (352)
T ss_pred cccc------------------cccceEEECCccccCCHHH----HHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECC
Confidence 3211 1256899999999999988 78899999999999999998889999999999999
Q ss_pred HHHHHHHHH-hCCceeCC--eeeEEeccccCC
Q 045516 574 ADSFNKALE-MSGTEIGG--YSLVVDEAKQRG 602 (675)
Q Consensus 574 ~e~A~~Al~-lng~~~~G--r~l~V~~a~~r~ 602 (675)
.++|..||. |||..+.| +.|.|.|+....
T Consensus 141 ~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 141 RDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 999999998 99999987 578888886544
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.5e-26 Score=233.43 Aligned_cols=178 Identities=22% Similarity=0.431 Sum_probs=145.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCccc-CCeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQML-GNRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~-~gr~i~V~ 489 (675)
..-.+-|||+.||.++.+++|.-||+..|+|-.+||++++ +|.++|||||.|.+.+.|+.||. ||++.| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4567999999999999999999999999999999999997 99999999999999999999998 999988 68888887
Q ss_pred eccccCCC-------------------------------------CCCCC----------------C-CCCCCcc-----
Q 045516 490 FARERGAY-------------------------------------TPYSG----------------G-NESNSFQ----- 510 (675)
Q Consensus 490 ~a~~~~~~-------------------------------------~~~~~----------------~-~~~~~~~----- 510 (675)
++...... ..+++ + .....++
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 76533110 00000 0 0000000
Q ss_pred ------C------CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHH
Q 045516 511 ------K------GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578 (675)
Q Consensus 511 ------~------~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~ 578 (675)
. ...+...+.|||+||+.++|++. |+.+|+.||.|.+|..++| ||||+|.+.++|.
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~----lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~dav 307 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEET----LKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAV 307 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHH----HHHHHHhccceEEeecccc--------eeEEeecchHHHH
Confidence 0 00122468999999999999998 7788888899999998876 8999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeccccCC
Q 045516 579 KALE-MSGTEIGGYSLVVDEAKQRG 602 (675)
Q Consensus 579 ~Al~-lng~~~~Gr~l~V~~a~~r~ 602 (675)
+||. +||..|+|..|.|.+|+|..
T Consensus 308 kAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred HHHHHhcCceecCceEEEEecCChh
Confidence 9998 99999999999999998753
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=2.5e-25 Score=254.96 Aligned_cols=183 Identities=28% Similarity=0.503 Sum_probs=153.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC----CeeEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG----NRAIRL 488 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~----gr~i~V 488 (675)
...++|||+|||+.+++++|+++|..||.|..|.|+++.+|+++|||||.|.+.++|.+||+ |||..|. |+.|.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34578999999999999999999999999999999999999999999999999999999997 9999999 999999
Q ss_pred EeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEE
Q 045516 489 DFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAY 568 (675)
Q Consensus 489 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~af 568 (675)
.++..+.........................+|||+||+..+++++ |+++|..||.|..|.|+.+ .+|.++||||
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~----L~~~F~~~G~i~~~~i~~d-~~g~~~g~gf 330 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEK----LRELFSECGEITSAKVMLD-EKGVSRGFGF 330 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHH----HHHHHHhcCCeEEEEEEEC-CCCCcCCeEE
Confidence 8876543221000000000000001122367899999999999988 7789999999999999999 7799999999
Q ss_pred EEeCCHHHHHHHHH-hCCceeCCeeeEEeccccC
Q 045516 569 LDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 569 V~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r 601 (675)
|+|.+.++|.+||. |||..|+|+.|.|.++..+
T Consensus 331 V~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 331 VCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred EEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 99999999999998 9999999999999998754
No 10
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=4.6e-26 Score=210.27 Aligned_cols=171 Identities=27% Similarity=0.447 Sum_probs=152.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....||||+||+..++++.|++||-++|+|++|+|++++ +...+|||||+|.++++|.-||. ||...|.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456899999999999999999999999999999999998 88899999999999999999999 9999999999999988
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEE-EecccCCCCCeeeEEEEE
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRI-SVPKDYDTGSVKGIAYLD 570 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v-~i~~d~~tG~~rG~afV~ 570 (675)
...... ...+..|||+||.+.+.+.. |+++|+.||.|... .|+++..||.++||+||.
T Consensus 87 s~~~~n-----------------l~vganlfvgNLd~~vDe~~----L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~ 145 (203)
T KOG0131|consen 87 SAHQKN-----------------LDVGANLFVGNLDPEVDEKL----LYDTFSAFGVLISPPKIMRDPDTGNPKGFGFIN 145 (203)
T ss_pred cccccc-----------------ccccccccccccCcchhHHH----HHHHHHhccccccCCcccccccCCCCCCCeEEe
Confidence 622211 12257899999999888876 88999999988764 688899999999999999
Q ss_pred eCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCCC
Q 045516 571 FTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDFG 605 (675)
Q Consensus 571 F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~~ 605 (675)
|.+.+.+.+||. |||..++.++|+|.++..+...+
T Consensus 146 ~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 146 YASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred chhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 999999999998 99999999999999998665443
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=3.7e-25 Score=253.48 Aligned_cols=163 Identities=28% Similarity=0.512 Sum_probs=145.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccC
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERG 495 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~ 495 (675)
+|||+|||+++|+++|++||..||.|.+|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999998 79999999999999999999997 99999999999999875432
Q ss_pred CCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHH
Q 045516 496 AYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e 575 (675)
... .....+|||+||+.++++.+ |+++|+.||.|..|.|+.+ .+|.++|||||+|.+.+
T Consensus 82 ~~~----------------~~~~~~vfV~nLp~~~~~~~----L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e 140 (562)
T TIGR01628 82 SLR----------------RSGVGNIFVKNLDKSVDNKA----LFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEE 140 (562)
T ss_pred ccc----------------ccCCCceEEcCCCccCCHHH----HHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHH
Confidence 111 11246899999999999998 7888999999999999988 46889999999999999
Q ss_pred HHHHHHH-hCCceeCCeeeEEeccccC
Q 045516 576 SFNKALE-MSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 576 ~A~~Al~-lng~~~~Gr~l~V~~a~~r 601 (675)
+|..||. |||..|+|+.|.|.....+
T Consensus 141 ~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 141 SAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred HHHHHHHHhcccEecCceEEEeccccc
Confidence 9999998 9999999999999765543
No 12
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=9.1e-25 Score=230.18 Aligned_cols=185 Identities=24% Similarity=0.460 Sum_probs=156.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecccc
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~ 494 (675)
.||||++|||.++.++|.+||+.+|+|..|.++.+. .+.++||+||.|.-.+++++||. +++..|.||.|+|.++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999999998 77899999999999999999997 9999999999999999876
Q ss_pred CCCCCCCCCCC---CCCccC-----CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeE
Q 045516 495 GAYTPYSGGNE---SNSFQK-----GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGI 566 (675)
Q Consensus 495 ~~~~~~~~~~~---~~~~~~-----~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~ 566 (675)
........+.. ...+.. .-...+--.|.|+|||+.+...+ |+.+|+.||.|..|.|++..+++.+ ||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~d----Lk~vFs~~G~V~Ei~IP~k~dgklc-GF 160 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPD----LKNVFSNFGKVVEIVIPRKKDGKLC-GF 160 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHH----HHHHHhhcceEEEEEcccCCCCCcc-ce
Confidence 54331111100 001111 11122357899999999999987 8999999999999999988776666 99
Q ss_pred EEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCCCC
Q 045516 567 AYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDFGS 606 (675)
Q Consensus 567 afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~~~ 606 (675)
|||+|.+..+|..||+ ||+..|+||+|-|+||.+...+..
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 9999999999999999 999999999999999998877654
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=2.9e-24 Score=243.45 Aligned_cols=180 Identities=23% Similarity=0.406 Sum_probs=143.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhC------------CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEV------------AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQM 480 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~------------G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~ 480 (675)
....++|||+|||+.+|+++|++||..| +.|..|++. ..+|||||+|.+.++|..||.|||+.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 5577999999999999999999999975 345555554 45899999999999999999999999
Q ss_pred cCCeeEEEEeccccCCCCCC---CCC-CCC---CCc----cCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcE
Q 045516 481 LGNRAIRLDFARERGAYTPY---SGG-NES---NSF----QKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEI 549 (675)
Q Consensus 481 ~~gr~i~V~~a~~~~~~~~~---~~~-~~~---~~~----~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I 549 (675)
|.|+.|.|............ ... ... ... .........++|||+|||+.+++++ |.++|..||.|
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i 322 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQ----IKELLESFGDL 322 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCe
Confidence 99999999754332210000 000 000 000 0011123468999999999999998 77888889999
Q ss_pred EEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccC
Q 045516 550 TRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 550 ~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r 601 (675)
..|.|+.+..+|.++|||||+|.+.+.|..||. |||..|+|+.|.|.++...
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999999999999999999999999999998 9999999999999998643
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=6.8e-24 Score=240.45 Aligned_cols=187 Identities=18% Similarity=0.357 Sum_probs=150.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+.+++++|++||..||.|..|.|+.+. +|.++|||||+|.+.+.|..||. |||+.|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999987 89999999999999999999997 9999999999999998
Q ss_pred cccCCCCCCCCCC-------CCCCcc---CCCCCCCceEEEEecCCCC------cCHHHHHHHHHhhhcccCcEEEEEec
Q 045516 492 RERGAYTPYSGGN-------ESNSFQ---KGGRGQAAHTIFIKGFDSS------VGEDQVRASLEEHFGSCGEITRISVP 555 (675)
Q Consensus 492 ~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~lfV~nLp~~------~te~~i~~~L~~~F~~~G~I~~v~i~ 555 (675)
............. ....+. ......+..+|+|.||... ....+|.+.|+++|.+||.|..|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 6432211110000 000000 0011335789999999642 23456778899999999999999998
Q ss_pred ccC---CCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 556 KDY---DTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 556 ~d~---~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
++. .++...||+||+|.+.+.|..||. |||..|+|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 753 345678999999999999999998 999999999999998754
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.2e-24 Score=226.07 Aligned_cols=183 Identities=31% Similarity=0.569 Sum_probs=154.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~ 494 (675)
-.+|+|+||||.|...+|..+|+.||.|+.|.|++...|+..|||||.|.+..+|..||+ ||+..|+||+|-|+|+..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 579999999999999999999999999999999988888888999999999999999998 9999999999999999887
Q ss_pred CCCCCCCC----------------------CC--------------C--CCC---cc-------------CC---C----
Q 045516 495 GAYTPYSG----------------------GN--------------E--SNS---FQ-------------KG---G---- 513 (675)
Q Consensus 495 ~~~~~~~~----------------------~~--------------~--~~~---~~-------------~~---~---- 513 (675)
..|..... +. . ... +. .. +
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 65543210 00 0 000 00 00 0
Q ss_pred -----------CCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH
Q 045516 514 -----------RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE 582 (675)
Q Consensus 514 -----------~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~ 582 (675)
......+|||+||||++++++ |.++|.+||.|.++.|+.+..||++.|.|||.|.+...|..||.
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEe----l~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEE----LKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHH----HHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 011248999999999999998 88999999999999999999999999999999999999999997
Q ss_pred -h-----CC-ceeCCeeeEEeccccCC
Q 045516 583 -M-----SG-TEIGGYSLVVDEAKQRG 602 (675)
Q Consensus 583 -l-----ng-~~~~Gr~l~V~~a~~r~ 602 (675)
. .| ..|.||.|.|..+..|.
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchH
Confidence 3 23 67899999999997654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=2.1e-22 Score=225.66 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=138.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH---hCCcccCCeeEEEEecc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE---LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~---l~g~~~~gr~i~V~~a~ 492 (675)
+++|||+|||+.+++++|+++|+.||.|..|.|+++ +|||||+|.+.++|.+||. +|+..|.|+.|+|.|+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 689999999999999999999999999999999853 7899999999999999997 47899999999999997
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
.+....... ..+. ........+|||.||++.+++++ |+++|+.||.|..|.|+++.. +++|||+|.
T Consensus 77 ~~~~~~~~~-----~~~~-~~~~~~~~~v~v~nl~~~vt~~~----L~~~F~~~G~V~~v~i~~~~~----~~~afVef~ 142 (481)
T TIGR01649 77 SQEIKRDGN-----SDFD-SAGPNKVLRVIVENPMYPITLDV----LYQIFNPYGKVLRIVTFTKNN----VFQALVEFE 142 (481)
T ss_pred CcccccCCC-----Cccc-CCCCCceEEEEEcCCCCCCCHHH----HHHHHhccCCEEEEEEEecCC----ceEEEEEEC
Confidence 543221110 0000 01112245899999999999987 889999999999999987643 479999999
Q ss_pred CHHHHHHHHH-hCCceeCC--eeeEEeccccC
Q 045516 573 DADSFNKALE-MSGTEIGG--YSLVVDEAKQR 601 (675)
Q Consensus 573 ~~e~A~~Al~-lng~~~~G--r~l~V~~a~~r 601 (675)
+.++|.+|+. |||..|.| +.|+|.|+++.
T Consensus 143 ~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 143 SVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred CHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 9999999998 99999964 58999998763
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.9e-24 Score=218.28 Aligned_cols=169 Identities=25% Similarity=0.475 Sum_probs=146.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCc-ccC--CeeEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQ-MLG--NRAIRL 488 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~-~~~--gr~i~V 488 (675)
.+.-.|||+-||..++|.+|++||++||.|..|.|++|+ ++.++|||||.|.+.++|.+|+. ||+. .|- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456789999999999999999999999999999999998 99999999999999999999997 7655 454 467888
Q ss_pred EeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEE
Q 045516 489 DFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAY 568 (675)
Q Consensus 489 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~af 568 (675)
.++....... ...+.|||+-|+..+++.+ ++.+|.+||.|++|+|+++.+ +.+|||||
T Consensus 112 k~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~e----vr~iFs~fG~Ied~~ilrd~~-~~sRGcaF 169 (510)
T KOG0144|consen 112 KYADGERERI-----------------VEERKLFVGMLSKQCTENE----VREIFSRFGHIEDCYILRDPD-GLSRGCAF 169 (510)
T ss_pred cccchhhhcc-----------------ccchhhhhhhccccccHHH----HHHHHHhhCccchhhheeccc-ccccceeE
Confidence 8875432211 2258899999999999998 778999999999999999954 99999999
Q ss_pred EEeCCHHHHHHHHH-hCCce-eCC--eeeEEeccccCCCC
Q 045516 569 LDFTDADSFNKALE-MSGTE-IGG--YSLVVDEAKQRGDF 604 (675)
Q Consensus 569 V~F~~~e~A~~Al~-lng~~-~~G--r~l~V~~a~~r~~~ 604 (675)
|.|.+.+.|..||. |||.. +.| .+|.|.|+.+..+.
T Consensus 170 V~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 170 VKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred EEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99999999999998 99865 555 58999999876654
No 18
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=2e-23 Score=215.69 Aligned_cols=176 Identities=24% Similarity=0.426 Sum_probs=160.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
+.++|||++|+|.++++.|+.+|.+||.|.+|.+++++ +++++||+||+|.+.+.+..+|....+.|.|+.|.+..+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999998 89999999999999999999999888999999999999887
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
+....... .......|||++|+.++++.+ |+++|.+||.|..+.|+.|..+.+++||+||.|.+
T Consensus 85 r~~~~~~~------------~~~~tkkiFvGG~~~~~~e~~----~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 85 REDQTKVG------------RHLRTKKIFVGGLPPDTTEED----FKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDS 148 (311)
T ss_pred cccccccc------------cccceeEEEecCcCCCCchHH----HhhhhhccceeEeeEEeecccccccccceeeEecc
Confidence 75433222 112478999999999999998 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeeEEeccccCCCCCC
Q 045516 574 ADSFNKALEMSGTEIGGYSLVVDEAKQRGDFGS 606 (675)
Q Consensus 574 ~e~A~~Al~lng~~~~Gr~l~V~~a~~r~~~~~ 606 (675)
.+.+.+++..+-+.|+|+.+.|..|.++.....
T Consensus 149 e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 149 EDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ccccceecccceeeecCceeeEeeccchhhccc
Confidence 999999999999999999999999999876553
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=7.7e-23 Score=229.22 Aligned_cols=178 Identities=21% Similarity=0.304 Sum_probs=143.8
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPF-SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
..+++|||+||++ .+++++|++||+.||.|..|+|+++. +|||||+|.+.++|..||. |||..|.|+.|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3568999999998 69999999999999999999999863 7999999999999999997 9999999999999998
Q ss_pred cccCCCCCCCC-------------CCCCCCccCC------CCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCc--EE
Q 045516 492 RERGAYTPYSG-------------GNESNSFQKG------GRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE--IT 550 (675)
Q Consensus 492 ~~~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~--I~ 550 (675)
.......+... ......+... ....++.+|||.|||..+++++ |+++|..||. |.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~----L~~lF~~~G~~~i~ 424 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED----LKELFAENGVHKVK 424 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH----HHHHHHhcCCccce
Confidence 65432111100 0000011110 1234678999999999999998 7788889998 88
Q ss_pred EEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee------eEEeccccC
Q 045516 551 RISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS------LVVDEAKQR 601 (675)
Q Consensus 551 ~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~------l~V~~a~~r 601 (675)
.|+|+... +..++||||+|.+.++|..||. ||++.|.|+. |+|.|+++|
T Consensus 425 ~ik~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 425 KFKFFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EEEEecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 88887643 2358999999999999999998 9999999985 999998875
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=201.55 Aligned_cols=164 Identities=26% Similarity=0.507 Sum_probs=150.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
.+.|.|.-||.++|+++|+.||...|+|..|+|++|+ +|++.||+||.|-++.+|.+||. |||..|....|+|.|+++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 3569999999999999999999999999999999999 99999999999999999999998 999999999999999986
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
.... .....|||.+||..++..+ |+++|.+||.|..-||..|..||.+||.+||.|..
T Consensus 121 Ss~~------------------Ik~aNLYvSGlPktMtqke----lE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 121 SSDS------------------IKDANLYVSGLPKTMTQKE----LEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred Chhh------------------hcccceEEecCCccchHHH----HHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 5432 1156899999999999988 88999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hCCceeCCe--eeEEeccccC
Q 045516 574 ADSFNKALE-MSGTEIGGY--SLVVDEAKQR 601 (675)
Q Consensus 574 ~e~A~~Al~-lng~~~~Gr--~l~V~~a~~r 601 (675)
..+|..||. |||+.--|. +|.|.|+...
T Consensus 179 r~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred hhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 999999998 999998775 7999998643
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=8.9e-23 Score=200.79 Aligned_cols=152 Identities=23% Similarity=0.454 Sum_probs=138.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERG 495 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~ 495 (675)
-.|||+|||..+++.+|+.||++||.|+.|.|+ +.||||...+...+.-||. ||+..|+|..|.|.-+..+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 479999999999999999999999999999999 6799999999999999998 99999999999999887652
Q ss_pred CCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHH
Q 045516 496 AYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e 575 (675)
....+|||+||-+.++.++ |+..|.+||.|..|.|.++ |+||.|...+
T Consensus 76 --------------------k~stkl~vgNis~tctn~E----lRa~fe~ygpviecdivkd--------y~fvh~d~~e 123 (346)
T KOG0109|consen 76 --------------------KASTKLHVGNISPTCTNQE----LRAKFEKYGPVIECDIVKD--------YAFVHFDRAE 123 (346)
T ss_pred --------------------CCccccccCCCCccccCHH----HhhhhcccCCceeeeeecc--------eeEEEEeecc
Confidence 1268999999999999998 7788999999999999875 7999999999
Q ss_pred HHHHHHH-hCCceeCCeeeEEeccccCCCCCCC
Q 045516 576 SFNKALE-MSGTEIGGYSLVVDEAKQRGDFGSG 607 (675)
Q Consensus 576 ~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~~~g 607 (675)
+|..||. |+|..|+|++|+|.....|-.-..|
T Consensus 124 da~~air~l~~~~~~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 124 DAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred chHHHHhcccccccccceeeeeeeccccccCCC
Confidence 9999998 9999999999999998876554433
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=6.6e-22 Score=221.24 Aligned_cols=181 Identities=24% Similarity=0.447 Sum_probs=144.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
.++|||+|||+.+++++|++||..||.|..|.|+++. +|+++|||||+|.+.++|.+||. |||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999998 67999999999999999999997 999999999999999642
Q ss_pred cCCCCC------------------------------------------CCCC------------CCC-------------
Q 045516 494 RGAYTP------------------------------------------YSGG------------NES------------- 506 (675)
Q Consensus 494 ~~~~~~------------------------------------------~~~~------------~~~------------- 506 (675)
...... .... ...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 110000 0000 000
Q ss_pred -----CCccCCCCCCCceEEEEecCCCCcCH------HHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHH
Q 045516 507 -----NSFQKGGRGQAAHTIFIKGFDSSVGE------DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575 (675)
Q Consensus 507 -----~~~~~~~~~~~~~~lfV~nLp~~~te------~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e 575 (675)
..........+..+|+|.||...... .+|.+.|.+.|.+||.|..|.|... ...|++||.|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 00000002245788999999654432 4667789999999999999999743 35799999999999
Q ss_pred HHHHHHH-hCCceeCCeeeEEecccc
Q 045516 576 SFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 576 ~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
.|..|+. |||.+|+|+.|.|.|...
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 9999998 999999999999998754
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.7e-22 Score=193.13 Aligned_cols=182 Identities=27% Similarity=0.473 Sum_probs=151.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~~ 490 (675)
..-.|||.+||..+|..+|..+|++||.|..-||+.|. +|.++|.+||.|....+|..||. |||+.-.| .+|.|.|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 45689999999999999999999999999999999987 99999999999999999999998 99998876 5799999
Q ss_pred ccccCCCC-----------C--CCCCCCCC------------------CccC--------------CCCCCCceEEEEec
Q 045516 491 ARERGAYT-----------P--YSGGNESN------------------SFQK--------------GGRGQAAHTIFIKG 525 (675)
Q Consensus 491 a~~~~~~~-----------~--~~~~~~~~------------------~~~~--------------~~~~~~~~~lfV~n 525 (675)
+....... + +.+++... .|.. .+......+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 87543211 0 00011000 0000 00112367999999
Q ss_pred CCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 526 FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 526 Lp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
|..+..+.. |+++|+.||-|..|.|++|+.|..++||+||.+.+.++|..||. |||..|++|.|.|.|-..
T Consensus 286 Lspd~de~~----LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 286 LSPDADESI----LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred cCCCchHhH----HHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 999988876 88999999999999999999999999999999999999999998 999999999999998654
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.1e-22 Score=204.85 Aligned_cols=176 Identities=23% Similarity=0.445 Sum_probs=150.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
-.|+||||.|.|.+.++.|+..|..||+|.+|.|..|+ +++++|||||+|.-++.|+.|++ |||..|+||.|+|.+..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 36899999999999999999999999999999999998 99999999999999999999998 99999999999997443
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
.-....+.. ...+. .....++|||..+..++++++ |+.+|..||.|.+|.+.++..++.++||+||+|.
T Consensus 192 NmpQAQpiI-----D~vqe--eAk~fnRiYVaSvHpDLSe~D----iKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~ 260 (544)
T KOG0124|consen 192 NMPQAQPII-----DMVQE--EAKKFNRIYVASVHPDLSETD----IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYN 260 (544)
T ss_pred CCcccchHH-----HHHHH--HHHhhheEEeeecCCCccHHH----HHHHHHhhcceeeEEeeccCCCCCccceeeEEec
Confidence 221111000 00000 011258999999999999999 6678888899999999999999999999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeeEEeccccC
Q 045516 573 DADSFNKALE-MSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 573 ~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r 601 (675)
+......||. ||-+.|+|+.|+|-.+...
T Consensus 261 n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 261 NLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cccchHHHhhhcchhhcccceEecccccCC
Confidence 9999999998 9999999999999877543
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=213.33 Aligned_cols=172 Identities=26% Similarity=0.487 Sum_probs=147.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCC----cccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGR----FKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~----~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
+|||.||+|.++.+.|..+|..+|.|+.|.|...++.. +.|||||+|.+.++|+.||. |+|+.|+|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999998877543 56999999999999999998 99999999999999997
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
.....+.. .........+.|+|+|||+..+-.+ ++.+|..||.|..|+|+.-...+.+||||||.|.
T Consensus 597 ~k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rE----Vr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 597 NKPASTVG---------KKKSKKKKGTKILVRNIPFEATKRE----VRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFL 663 (725)
T ss_pred Cccccccc---------cccccccccceeeeeccchHHHHHH----HHHHHhcccceeeeccchhhcchhhccceeeecc
Confidence 32211111 0111122268999999999999887 7899999999999999998777889999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeeEEeccccCC
Q 045516 573 DADSFNKALE-MSGTEIGGYSLVVDEAKQRG 602 (675)
Q Consensus 573 ~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~ 602 (675)
++..|.+|+. |....|.||+|.+.|+....
T Consensus 664 t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 664 TPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred CcHHHHHHHHhhcccceechhhheehhccch
Confidence 9999999998 99999999999999997543
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=8.2e-22 Score=209.67 Aligned_cols=185 Identities=29% Similarity=0.452 Sum_probs=158.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEE
Q 045516 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLD 489 (675)
Q Consensus 411 ~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~ 489 (675)
+...+.+|||+-.|...++..+|++||+.+|.|.+|+|+.++ +++++|.|||+|.+.+.+..||.|.|+.++|.+|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 335678999999999999999999999999999999999998 8999999999999999999999999999999999998
Q ss_pred eccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEE
Q 045516 490 FARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYL 569 (675)
Q Consensus 490 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV 569 (675)
+...-.... ......++..+...+...|||+||.+++++.+ |..+|..||.|..|.+++|..||+++||+||
T Consensus 254 ~sEaeknr~----a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~----lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi 325 (549)
T KOG0147|consen 254 LSEAEKNRA----ANASPALQGKGFTGPMRRLYVGNLHFNITEDM----LRGIFEPFGKIENVQLTKDSETGRSKGFGFI 325 (549)
T ss_pred ccHHHHHHH----HhccccccccccccchhhhhhcccccCchHHH----HhhhccCcccceeeeeccccccccccCcceE
Confidence 765322111 11122233222233344599999999999998 7799999999999999999999999999999
Q ss_pred EeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 570 DFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 570 ~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
+|.+.+.|.+|+. |||..|.||.|+|.....+-.
T Consensus 326 ~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 326 TFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred EEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 9999999999987 999999999999987765543
No 27
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.5e-19 Score=164.00 Aligned_cols=163 Identities=18% Similarity=0.379 Sum_probs=129.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
...++|||+|||.++.+.+|.+||.+||.|..|.|...+ ....||||+|.++.+|..||. -||..++|..|+|.|+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457999999999999999999999999999999987543 236899999999999999998 99999999999999998
Q ss_pred ccCCCCCCCCCCCCC--------CccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCee
Q 045516 493 ERGAYTPYSGGNESN--------SFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVK 564 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~r 564 (675)
.........+..... ....+........|.|.+||...+|++ |++|+...|.|.+..+.+|
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQD----LKDHmReaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQD----LKDHMREAGDVCFADVQRD------- 150 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHH----HHHHHHhhCCeeeeeeecc-------
Confidence 654222221111000 011111223467999999999999999 5566666699999999887
Q ss_pred eEEEEEeCCHHHHHHHHH-hCCceeC
Q 045516 565 GIAYLDFTDADSFNKALE-MSGTEIG 589 (675)
Q Consensus 565 G~afV~F~~~e~A~~Al~-lng~~~~ 589 (675)
|++.|.|...+++.-|+. |....|.
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccccc
Confidence 689999999999999997 8877664
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.6e-19 Score=193.43 Aligned_cols=154 Identities=29% Similarity=0.497 Sum_probs=141.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERG 495 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~ 495 (675)
..|||| +++|+..|+++|+.+|.|+.|+|+++. + +.|||||.|.++.+|.+||. ||...|.|++|+|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 479999 999999999999999999999999999 6 99999999999999999997 99999999999999986542
Q ss_pred CCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHH
Q 045516 496 AYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e 575 (675)
..|||.||+..++... |.++|+.||.|..|.+.++.. | ++|| ||+|.+.+
T Consensus 77 -----------------------~~~~i~nl~~~~~~~~----~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~ 126 (369)
T KOG0123|consen 77 -----------------------SLVFIKNLDESIDNKS----LYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEE 126 (369)
T ss_pred -----------------------ceeeecCCCcccCcHH----HHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHH
Confidence 2299999999999988 889999999999999999965 4 9999 99999999
Q ss_pred HHHHHHH-hCCceeCCeeeEEeccccCCCCC
Q 045516 576 SFNKALE-MSGTEIGGYSLVVDEAKQRGDFG 605 (675)
Q Consensus 576 ~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~~ 605 (675)
.|.+||. |||..+.|..|.|.....+..+.
T Consensus 127 ~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 127 SAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred HHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 9999998 99999999999998887665544
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=1.2e-18 Score=195.04 Aligned_cols=79 Identities=22% Similarity=0.437 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+++++++|+++|+.||.|..|+|.++. +++++|||||+|.+.++|.+||. ||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999997 78899999999999999999997 99999999999998876
Q ss_pred c
Q 045516 493 E 493 (675)
Q Consensus 493 ~ 493 (675)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 30
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=3.4e-19 Score=173.28 Aligned_cols=189 Identities=26% Similarity=0.431 Sum_probs=153.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCccc-CC--eeEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQML-GN--RAIRL 488 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~-~g--r~i~V 488 (675)
.++.|.||||-|...-.|++++.+|..||.|..|.+.+..+|.++||+||.|.+.-+|+.||. |||..- -| ..|.|
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 347899999999999999999999999999999999999999999999999999999999998 988654 33 44666
Q ss_pred EeccccC---------------CCCC------------------------------------------------------
Q 045516 489 DFARERG---------------AYTP------------------------------------------------------ 499 (675)
Q Consensus 489 ~~a~~~~---------------~~~~------------------------------------------------------ 499 (675)
.|+.... .+.+
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 6663210 0000
Q ss_pred ------CCCCCC-----------------CCCccC---------------------------------------------
Q 045516 500 ------YSGGNE-----------------SNSFQK--------------------------------------------- 511 (675)
Q Consensus 500 ------~~~~~~-----------------~~~~~~--------------------------------------------- 511 (675)
..+... .+.+..
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence 000000 000000
Q ss_pred -----------------------CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEE
Q 045516 512 -----------------------GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAY 568 (675)
Q Consensus 512 -----------------------~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~af 568 (675)
...++..+.|||-+||..+++.+ |.+.|-.||.|....++.|+-|+.++.|+|
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaE----liQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAE----LIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHH----HHHHhccccceeeeeeeehhccccccceee
Confidence 00134589999999999999998 778999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCCC
Q 045516 569 LDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDFG 605 (675)
Q Consensus 569 V~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~~ 605 (675)
|.|.++..+..||. |||..|+-++|+|.+-+|+..++
T Consensus 332 VSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred EecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999 99999999999999999887653
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=2.9e-17 Score=173.01 Aligned_cols=172 Identities=22% Similarity=0.303 Sum_probs=134.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
....-|-+++|||.+|+++|++||+.|+ |.++.|.+ .+|+..|-|||+|.+.+++++||+++...+..|.|.|..+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 3457899999999999999999999995 77755544 379999999999999999999999999999999999987754
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE-EEecccCCCCCeeeEEEEEeC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR-ISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~-v~i~~d~~tG~~rG~afV~F~ 572 (675)
......... . .........+|.|++||+.|++++|.++|..| -.|.. |.|+.+ ..+++.|-|||+|.
T Consensus 86 ~e~d~~~~~------~-g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL----~Iv~~gi~l~~d-~rgR~tGEAfVqF~ 153 (510)
T KOG4211|consen 86 AEADWVMRP------G-GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL----EIVPDGILLPMD-QRGRPTGEAFVQFE 153 (510)
T ss_pred ccccccccC------C-CCCCCCCCceEEecCCCccCcHHHHHHHhcCC----cccccceeeecc-CCCCcccceEEEec
Confidence 432111110 0 00111246899999999999999966554443 44444 334444 45889999999999
Q ss_pred CHHHHHHHHHhCCceeCCeeeEEeccc
Q 045516 573 DADSFNKALEMSGTEIGGYSLVVDEAK 599 (675)
Q Consensus 573 ~~e~A~~Al~lng~~~~Gr~l~V~~a~ 599 (675)
+.+.|+.||..|...|+.|.|.|..+.
T Consensus 154 sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 154 SQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CHHHHHHHHHHHHHhhccceEEeehhH
Confidence 999999999999999999999998764
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2e-18 Score=168.79 Aligned_cols=141 Identities=21% Similarity=0.462 Sum_probs=118.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
.+.|||||+||...+|++-|..||.+.|.|..++|+.+ .|+|.++..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATA 50 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccC
Confidence 45699999999999999999999999999999999864 344555443
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
....... .......|||+-|...+..+. |++.|.+||+|..++|++|..|++++||+||.|-+
T Consensus 51 p~nQsk~-------------t~~~hfhvfvgdls~eI~~e~----lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 51 PGNQSKP-------------TSNQHFHVFVGDLSPEIDNEK----LREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cccCCCC-------------ccccceeEEehhcchhcchHH----HHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 3111000 011156799999999999887 77899999999999999999999999999999999
Q ss_pred HHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 574 ADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 574 ~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
.++|..||. |||.+|++|.|+-.|+..+...
T Consensus 114 k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e 145 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGRRTIRTNWATRKPSE 145 (321)
T ss_pred hHHHHHHHHHhCCeeeccceeeccccccCccc
Confidence 999999998 9999999999999999876643
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.8e-18 Score=181.37 Aligned_cols=168 Identities=28% Similarity=0.532 Sum_probs=146.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~ 494 (675)
...|||.||+..++...|+++|+.||.|++|++..+.+| ++|| ||+|.+.+.|.+||. |||..+.|+.|.|.+...+
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 344999999999999999999999999999999999988 8999 999999999999998 9999999999999888765
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCH
Q 045516 495 GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~ 574 (675)
........ . .......++|.|++..++... |..+|..||.|..+.++.+.. |.++||+||.|.++
T Consensus 154 ~er~~~~~---------~-~~~~~t~v~vk~~~~~~~~~~----l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~ 218 (369)
T KOG0123|consen 154 EEREAPLG---------E-YKKRFTNVYVKNLEEDSTDEE----LKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENP 218 (369)
T ss_pred hhhccccc---------c-hhhhhhhhheeccccccchHH----HHHhhcccCcceEEEEeecCC-CCCCCccceeecCh
Confidence 43322110 1 122357889999998888887 788999999999999999854 66999999999999
Q ss_pred HHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 575 DSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 575 e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
+.|..|+. ||+..+.+..+.|..+..
T Consensus 219 e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 219 EDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred hHHHHHHHhccCCcCCccceeeccccc
Confidence 99999998 999999999999987765
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=3.7e-18 Score=181.95 Aligned_cols=183 Identities=26% Similarity=0.479 Sum_probs=141.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
.+..++|||+||+++++++.|+.+|+.||.|..|.++++. +|+++||+||+|.+.++|.+|+. |||.+|-||.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 3455569999999999999999999999999999999998 99999999999999999999997 999999999999976
Q ss_pred ccccCCCCCC------------------CCCCC------------------------------CCCcc------CCCCC-
Q 045516 491 ARERGAYTPY------------------SGGNE------------------------------SNSFQ------KGGRG- 515 (675)
Q Consensus 491 a~~~~~~~~~------------------~~~~~------------------------------~~~~~------~~~~~- 515 (675)
...+...... .++.. ...+. .....
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPAD 434 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccc
Confidence 6543211100 00000 00000 00011
Q ss_pred ------CCceEEEEecCCCCcC------HHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-
Q 045516 516 ------QAAHTIFIKGFDSSVG------EDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE- 582 (675)
Q Consensus 516 ------~~~~~lfV~nLp~~~t------e~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~- 582 (675)
.++.++.|.|+-...+ .++|++.+.+.+++||.|.+|.|..+ +-|+.||.|.+.+.|..|+.
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHH
Confidence 3355666677643222 26889999999999999999988665 23999999999999999998
Q ss_pred hCCceeCCeeeEEecccc
Q 045516 583 MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 583 lng~~~~Gr~l~V~~a~~ 600 (675)
|||.||.|+.|.+.|-..
T Consensus 510 lhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 510 LHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HhhhhhccceeEEEEeeh
Confidence 999999999999987653
No 35
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=1.8e-17 Score=155.09 Aligned_cols=84 Identities=25% Similarity=0.514 Sum_probs=78.5
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|||+||++.+++++ |+++|.+||.|..|.|+.+..+++++|||||+|.+.++|..||. ||+..|+|+.|+|
T Consensus 33 ~~~~lfVgnL~~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDAS----LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 378999999999999998 78899999999999999999999999999999999999999998 9999999999999
Q ss_pred eccccCCCC
Q 045516 596 DEAKQRGDF 604 (675)
Q Consensus 596 ~~a~~r~~~ 604 (675)
.++..+...
T Consensus 109 ~~a~~~~~~ 117 (144)
T PLN03134 109 NPANDRPSA 117 (144)
T ss_pred EeCCcCCCC
Confidence 999876553
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.75 E-value=3.3e-17 Score=157.99 Aligned_cols=173 Identities=19% Similarity=0.362 Sum_probs=140.6
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 415 GSKTLFVGNLPFSVEQADVQN----FFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~----~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
...||||.||+..+..++|+. ||++||.|++|.... +.+.+|.|||.|.+.+.|..|+. |+|..|.|.+|+|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 345999999999999999888 999999999998875 57889999999999999999997 99999999999999
Q ss_pred eccccCCCCCCCC-------------------------CC--------CCCCccCCCCCCCceEEEEecCCCCcCHHHHH
Q 045516 490 FARERGAYTPYSG-------------------------GN--------ESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536 (675)
Q Consensus 490 ~a~~~~~~~~~~~-------------------------~~--------~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~ 536 (675)
|+........... +. ....+. ....++..+||+.|||..++.+.
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~-~~~~ppn~ilf~~niP~es~~e~-- 162 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFL-AQMAPPNNILFLTNIPSESESEM-- 162 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCcc-ccCCCCceEEEEecCCcchhHHH--
Confidence 9976532211100 00 000010 22356789999999999999887
Q ss_pred HHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeccc
Q 045516 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG-GYSLVVDEAK 599 (675)
Q Consensus 537 ~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~-Gr~l~V~~a~ 599 (675)
|..+|.+|.....|+++... .++|||+|.+...+..|+. +.+..|- ...|.|.++.
T Consensus 163 --l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 --LSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred --HHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 88899999999999988764 6899999999999999998 9888886 8888887764
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.3e-17 Score=154.49 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
...+++|||+|||+++++++|+++|.+||.|.+|+|+.+. +++++|||||+|.+.++|+.||. ||++.|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999999997 89999999999999999999997 999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8643
No 38
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.6e-17 Score=171.70 Aligned_cols=185 Identities=26% Similarity=0.425 Sum_probs=151.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcc-cCC--eeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQM-LGN--RAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~-~~g--r~i~V~~ 490 (675)
+.+.|||+-|+..+|+.+|+++|.+||.|.+|+|+++..+.+||||||.|.+.+.|..||+ |||.. +.| .+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999998 99875 444 6789988
Q ss_pred ccccCCCC-------------------CCC----------------------------------C---------------
Q 045516 491 ARERGAYT-------------------PYS----------------------------------G--------------- 502 (675)
Q Consensus 491 a~~~~~~~-------------------~~~----------------------------------~--------------- 502 (675)
+....... ++. +
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 85321000 000 0
Q ss_pred -------------C--------------C------CCCC-----------------------ccCC--------------
Q 045516 503 -------------G--------------N------ESNS-----------------------FQKG-------------- 512 (675)
Q Consensus 503 -------------~--------------~------~~~~-----------------------~~~~-------------- 512 (675)
+ . .... +...
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 0 0 0000 0000
Q ss_pred --------------------------------------------------------CCCCCceEEEEecCCCCcCHHHHH
Q 045516 513 --------------------------------------------------------GRGQAAHTIFIKGFDSSVGEDQVR 536 (675)
Q Consensus 513 --------------------------------------------------------~~~~~~~~lfV~nLp~~~te~~i~ 536 (675)
..++....|||.+||..+.+.+
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~-- 440 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD-- 440 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH--
Confidence 0123467899999999999988
Q ss_pred HHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 537 ~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
|-..|..||.|....++.|..||.++.|+||.|++...|..||. |||..|++.+|+|...+.+.+
T Consensus 441 --l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 441 --LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred --HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 77889999999999999999999999999999999999999998 999999999999998876654
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=3e-16 Score=175.71 Aligned_cols=123 Identities=23% Similarity=0.257 Sum_probs=95.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhC--CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEV--AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
..++|||+||++.+++++|+++|..| |.|..|.++ ++||||+|.+.++|.+||. ||+..|.|+.|+|.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45899999999999999999999999 999999887 5799999999999999997 9999999999999999
Q ss_pred cccCCCCCC-----CCCC---CCC--CccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCc
Q 045516 492 RERGAYTPY-----SGGN---ESN--SFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE 548 (675)
Q Consensus 492 ~~~~~~~~~-----~~~~---~~~--~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~ 548 (675)
.+....... .++. ... ........+...++++.||+++.++.. ++.+|..+|.
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~----~~~~f~~~g~ 367 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAP----SLHFPRMPGP 367 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccc----hhhccccCcc
Confidence 765322100 0000 000 011112334589999999999998886 7778877764
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1e-16 Score=156.25 Aligned_cols=160 Identities=24% Similarity=0.525 Sum_probs=131.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERG 495 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~ 495 (675)
..|||++||+.+.+.+|..||..||.|.+|.|. .||+||+|.+.-+|.-||. ||+.+|.|..|.|.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 479999999999999999999999999999998 6899999999999999997 99999999999999988643
Q ss_pred CCCCCCCCCCCC--CccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 496 AYTPYSGGNESN--SFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 496 ~~~~~~~~~~~~--~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
.......+.... ...........+.|+|.||...+.|++ |.++|..+|.+....+ .++++||+|..
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qd----l~d~~~~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQD----LKDHFRPAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHH----HhhhhcccCCCchhhh--------hccccceeehh
Confidence 333111111000 111112234578899999999998888 8899999999955554 26799999999
Q ss_pred HHHHHHHHH-hCCceeCCeeeEE
Q 045516 574 ADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 574 ~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.+++..||. |++..|.++.|.+
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhhhhhcchhccchhhcCceeee
Confidence 999999999 9999999999999
No 41
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=1.5e-15 Score=153.55 Aligned_cols=184 Identities=17% Similarity=0.336 Sum_probs=145.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeE--------EEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCC
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVV--------DVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN 483 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g 483 (675)
..-...|||.|||.++|.+++.++|+.||.|. .|.|+++..|+.+|-|.|.|-..+++..||. |++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34456799999999999999999999999874 4889999999999999999999999999998 99999999
Q ss_pred eeEEEEecccc--CCCCCCCCCC------------------CCCCccCCCCCCCceEEEEecCCC----CcC---HHHHH
Q 045516 484 RAIRLDFARER--GAYTPYSGGN------------------ESNSFQKGGRGQAAHTIFIKGFDS----SVG---EDQVR 536 (675)
Q Consensus 484 r~i~V~~a~~~--~~~~~~~~~~------------------~~~~~~~~~~~~~~~~lfV~nLp~----~~t---e~~i~ 536 (675)
+.|+|..+.-. +.+.+..... ..............++|.|.||-. ..+ ..+|+
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999988642 2221111100 011111222344578999999753 233 34667
Q ss_pred HHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 537 ~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
+.|.+-+.+||.|..|.|.-. .+.|.+.|.|.+.+.|..||+ |+|++|+||.|+...-..
T Consensus 291 edl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 778888999999999988653 458999999999999999999 999999999999876543
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.66 E-value=3.5e-15 Score=154.18 Aligned_cols=180 Identities=23% Similarity=0.419 Sum_probs=143.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh-hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFS-EVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
-.|.+||.||||++.+++|++||. ..|.|..|.|+.|..|+.+|||.|+|.+++.+++|++ ||.+.+.||.|.|.-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356799999999999999999998 5899999999999999999999999999999999998 99999999999996554
Q ss_pred ccCC--CC-----------------------CCCC--------------------CC----CCCC---------------
Q 045516 493 ERGA--YT-----------------------PYSG--------------------GN----ESNS--------------- 508 (675)
Q Consensus 493 ~~~~--~~-----------------------~~~~--------------------~~----~~~~--------------- 508 (675)
.... +. .... +. ..+.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 3100 00 0000 00 0000
Q ss_pred ccC---CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC
Q 045516 509 FQK---GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS 584 (675)
Q Consensus 509 ~~~---~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln 584 (675)
|.. .-..+....+||.||.+.+.... |.+.|.-.|.|..|.+-.+.. |..+|||.|+|.++-.|..||. |+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~k----L~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKK----LKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHH----HHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhc
Confidence 000 00223467899999999999765 888998899999999999866 6899999999999999999998 78
Q ss_pred CceeCCeeeEEeccc
Q 045516 585 GTEIGGYSLVVDEAK 599 (675)
Q Consensus 585 g~~~~Gr~l~V~~a~ 599 (675)
+.-+..+++.+.+.+
T Consensus 278 ~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 278 RQGLFDRRMTVRLDR 292 (608)
T ss_pred cCCCccccceeeccc
Confidence 777778888777654
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=5.6e-15 Score=157.64 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~~ 490 (675)
..++|||+|||+.+++++|++||.+||.|..|+|+++. +++++|||||+|.+.++|.+||+ ||++.|.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999997 89999999999999999999998 99999876 6888888
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 7543
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=149.50 Aligned_cols=162 Identities=30% Similarity=0.462 Sum_probs=121.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
.++|||+|||+.+++++|+++|..||.|..|+|..+. ++.++|||||.|.+.+.|..||. |++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999997 99999999999999999999998 999999999999999653
Q ss_pred ----cCCCCCC--CCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEE
Q 045516 494 ----RGAYTPY--SGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIA 567 (675)
Q Consensus 494 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~a 567 (675)
+...... ....................+++.+++..+.... +..+|..+|.+..+.+...........+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEE----LADLFKSRGDIVRASLPPSKDGKIPKSRS 270 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhH----HHHhccccccceeeeccCCCCCccccccc
Confidence 1111100 0000001111222344578999999999999887 77888999999888777765544444444
Q ss_pred EEEeCCHHHHHHHH
Q 045516 568 YLDFTDADSFNKAL 581 (675)
Q Consensus 568 fV~F~~~e~A~~Al 581 (675)
++.+.....+...+
T Consensus 271 ~~~~~~~~~~~~~~ 284 (306)
T COG0724 271 FVGNEASKDALESN 284 (306)
T ss_pred ccchhHHHhhhhhh
Confidence 44444444444433
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.59 E-value=9.6e-14 Score=146.70 Aligned_cols=179 Identities=22% Similarity=0.358 Sum_probs=133.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVD-VRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
....|-+++|||.||+++|.+||+-.-.|.. |.|+.+..+++.|-|||.|.+.+.|++||..|...|..|.|.|..+..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 5679999999999999999999998766655 667888889999999999999999999999999999999999866532
Q ss_pred cC----------------CCCC---CCC--------CCCC-----------------------------------CCccC
Q 045516 494 RG----------------AYTP---YSG--------GNES-----------------------------------NSFQK 511 (675)
Q Consensus 494 ~~----------------~~~~---~~~--------~~~~-----------------------------------~~~~~ 511 (675)
.. .+.. .+. .... ..+..
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 10 0000 000 0000 00000
Q ss_pred ------------CCC-CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHH
Q 045516 512 ------------GGR-GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578 (675)
Q Consensus 512 ------------~~~-~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~ 578 (675)
... ......+++++||+..+..+ +..+|+..-.+ .|+|... .+|+..|-|+|+|.+.++|.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~d----i~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav 335 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATEND----IANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAV 335 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcc----hhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhH
Confidence 000 11237889999999999998 55667644333 5555554 34999999999999999999
Q ss_pred HHHHhCCceeCCeeeEEeccc
Q 045516 579 KALEMSGTEIGGYSLVVDEAK 599 (675)
Q Consensus 579 ~Al~lng~~~~Gr~l~V~~a~ 599 (675)
.||.-++..++.+.|.+....
T Consensus 336 ~Amskd~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 336 GAMGKDGANMGHRYVELFLNG 356 (510)
T ss_pred hhhccCCcccCcceeeecccC
Confidence 999999999999998887664
No 46
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=2.6e-14 Score=134.90 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=76.4
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
...|.|-||-+.++.++ |..+|.+||.|.+|.|++|..|+.++|||||.|....+|..||+ |+|..|+|+.|+|+
T Consensus 13 m~SLkVdNLTyRTspd~----LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDD----LRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred ceeEEecceeccCCHHH----HHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 68999999999999998 78899999999999999999999999999999999999999999 99999999999999
Q ss_pred ccccCC
Q 045516 597 EAKQRG 602 (675)
Q Consensus 597 ~a~~r~ 602 (675)
+++-..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 986543
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1.4e-14 Score=117.84 Aligned_cols=69 Identities=43% Similarity=0.814 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 419 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
|||+|||+++++++|+++|.+||.|..|.|..+..++.+|||||+|.+.++|..||. |||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998889999999999999999999998 999999999986
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=7.6e-15 Score=128.50 Aligned_cols=79 Identities=29% Similarity=0.526 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
..++||||+||++.+++++|++||+.||.|..|.|-.++ +..+.|||||+|.+.++|..||. +||+.|+.++|+|+|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 457999999999999999999999999999999999998 78899999999999999999999 9999999999999886
Q ss_pred c
Q 045516 492 R 492 (675)
Q Consensus 492 ~ 492 (675)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 49
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.53 E-value=2.7e-14 Score=147.84 Aligned_cols=180 Identities=34% Similarity=0.469 Sum_probs=148.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCc-ccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQ-MLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~-~~~gr~i~V~~a 491 (675)
+...++||++|.+++.+.++..+|..+|.+..+.+.... ...++||++|.|...+.+..||.+.+. .+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 567899999999999999999999999998888887755 788999999999999999999997774 677777777766
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
..+..+... .............++|.||++.++.++ |+.+|..||.|..|+++.+..++.+.||+||.|
T Consensus 166 ~~~~~~~~n-------~~~~~~~~~s~~~~~~~~~~f~~~~d~----~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~ 234 (285)
T KOG4210|consen 166 TRRGLRPKN-------KLSRLSSGPSDTIFFVGELDFSLTRDD----LKEHFVSSGEITSVRLPTDEESGDSKGFAYVDF 234 (285)
T ss_pred ccccccccc-------hhcccccCccccceeecccccccchHH----HhhhccCcCcceeeccCCCCCccchhhhhhhhh
Confidence 655421111 111122233344455999999999999 559999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCceeCCeeeEEeccccCCCC
Q 045516 572 TDADSFNKALEMSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 572 ~~~e~A~~Al~lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
.....+..+|..+...+.+++++|.+..++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 235 SAGNSKKLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhchhHHHHhhcccCcccCcccccccCCCCccc
Confidence 999999999877788899999999998877654
No 50
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.2e-13 Score=135.56 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
...-+||||+-|++.+++..|+..|..||.|..|+|+++. +|+++|||||+|.++-++..|+. .+|+.|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3567999999999999999999999999999999999997 99999999999999999999997 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
-..+..
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 876643
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=5.9e-14 Score=152.27 Aligned_cols=187 Identities=17% Similarity=0.363 Sum_probs=149.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
-..+.|||+|||..+++.+|.+++..||.+...+++.+. +|.++||||.+|.++.....|+. |||+.+++..|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 456899999999999999999999999999999999998 79999999999999999999998 9999999999999988
Q ss_pred cccCCCCCCCCCCCCCCcc------CCCCCCCceEEEEecCC------CCcCHHHHHHHHHhhhcccCcEEEEEecccCC
Q 045516 492 RERGAYTPYSGGNESNSFQ------KGGRGQAAHTIFIKGFD------SSVGEDQVRASLEEHFGSCGEITRISVPKDYD 559 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~lfV~nLp------~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~ 559 (675)
.................+. ....+.+..+|++.|+- .+....+|.+.|+.-+++||.|..|.|++.+.
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 6543322111110000111 12234456777777642 23344678888888899999999999999843
Q ss_pred C---CCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 560 T---GSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 560 t---G~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
. ....|-.||+|.+.+++++|+. |+|..|+||.|.+.|...
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 3 3356889999999999999998 999999999999988754
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=4.5e-14 Score=141.41 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=71.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~~ 494 (675)
.++|||+|||+.+++++|++||+.||.|.+|+|+++.. .+|||||+|.+.++|..||.|||..|.|+.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 58999999999999999999999999999999998753 579999999999999999999999999999999998643
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3e-13 Score=125.08 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
..+.|||+||+..++..+|..+|..||.|..|||..++ .|||||+|.++.+|..|+. |||..|.|..|+|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 36899999999999999999999999999999999864 8999999999999999998 999999999999999875
Q ss_pred cC
Q 045516 494 RG 495 (675)
Q Consensus 494 ~~ 495 (675)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 54
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=151.25 Aligned_cols=178 Identities=21% Similarity=0.328 Sum_probs=136.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....+.|+|+|||..+..++|..+|..||.|..|.|+. .| -.++|+|.++.+|..|+. |....|...+|++.++
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~--~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP--GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCc--cc---ceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 34568999999999999999999999999999996652 22 249999999999999998 9999999999999887
Q ss_pred cccCCC-----CCCCC--CCC-------C-CCccC-----C------------CCCCCceEEEEecCCCCcCHHHHHHHH
Q 045516 492 RERGAY-----TPYSG--GNE-------S-NSFQK-----G------------GRGQAAHTIFIKGFDSSVGEDQVRASL 539 (675)
Q Consensus 492 ~~~~~~-----~~~~~--~~~-------~-~~~~~-----~------------~~~~~~~~lfV~nLp~~~te~~i~~~L 539 (675)
....-. ..... ... . ..... . ......++|||.||++..+.+. |
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~----l 532 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED----L 532 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH----H
Confidence 542211 00000 000 0 00000 0 0111233499999999999988 7
Q ss_pred HhhhcccCcEEEEEecccCCCC---CeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccc
Q 045516 540 EEHFGSCGEITRISVPKDYDTG---SVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 599 (675)
Q Consensus 540 ~~~F~~~G~I~~v~i~~d~~tG---~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~ 599 (675)
..+|..+|.|..|.|....+.- .+.|||||+|.+.++|..||. |+|+.|+|+.|.|.+..
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 7888889999999888765421 245999999999999999998 99999999999999988
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.3e-13 Score=143.65 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
.-+.|||+||+.++|++.|+.+|.+||.|..|..++| ||||.|.+.++|-+||+ +||+.|.|..|.|.++.+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 3478999999999999999999999999999998854 99999999999999997 999999999999999987
Q ss_pred cCCC
Q 045516 494 RGAY 497 (675)
Q Consensus 494 ~~~~ 497 (675)
....
T Consensus 331 ~~k~ 334 (506)
T KOG0117|consen 331 VDKK 334 (506)
T ss_pred hhhh
Confidence 6543
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=4.3e-13 Score=135.98 Aligned_cols=185 Identities=18% Similarity=0.341 Sum_probs=138.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
.-++|||..++.++++++|+.+|+-||+|+.|.|.+.+ .+.++||+||+|.+......||. ||-+.|+|+.|+|..+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 34799999999999999999999999999999999998 56699999999999999999998 99999999999997664
Q ss_pred ccCCCC--CCC----------------------------------CC---------------------------------
Q 045516 493 ERGAYT--PYS----------------------------------GG--------------------------------- 503 (675)
Q Consensus 493 ~~~~~~--~~~----------------------------------~~--------------------------------- 503 (675)
...... +.. +.
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 321000 000 00
Q ss_pred -CCCC----CccC----------------------------------------------------------CCCCCCceE
Q 045516 504 -NESN----SFQK----------------------------------------------------------GGRGQAAHT 520 (675)
Q Consensus 504 -~~~~----~~~~----------------------------------------------------------~~~~~~~~~ 520 (675)
+... .... .-+...++.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 0000 0000 001234678
Q ss_pred EEEecCCCC-cCHHHHHHHHHhhhcccCcEEEEEecccCCCCC----eeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 521 IFIKGFDSS-VGEDQVRASLEEHFGSCGEITRISVPKDYDTGS----VKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 521 lfV~nLp~~-~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~----~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
|.++|+-.. --+++|...+++.+++||.|.+|.|.....++. .---.||+|.....+.+|++ |+|++|+||.+.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 888987332 223456667788999999999999987765542 12347999999999999998 999999999988
Q ss_pred Eeccc
Q 045516 595 VDEAK 599 (675)
Q Consensus 595 V~~a~ 599 (675)
.....
T Consensus 529 AE~YD 533 (544)
T KOG0124|consen 529 AEVYD 533 (544)
T ss_pred hhhhh
Confidence 76543
No 57
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.3e-13 Score=134.29 Aligned_cols=89 Identities=27% Similarity=0.484 Sum_probs=81.9
Q ss_pred CCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 514 ~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
...+-+||||.-|++.+++.. |+..|..||.|..|+|+++..||.++|||||+|.+.-++..|.. .+|..|+|+.
T Consensus 97 ~gDPy~TLFv~RLnydT~Esk----LrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESK----LRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred cCCccceeeeeeccccccHHH----HHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 446789999999999999998 88999999999999999999999999999999999999999998 9999999999
Q ss_pred eEEeccccCCCCCC
Q 045516 593 LVVDEAKQRGDFGS 606 (675)
Q Consensus 593 l~V~~a~~r~~~~~ 606 (675)
|.|++.+.+...+.
T Consensus 173 i~VDvERgRTvkgW 186 (335)
T KOG0113|consen 173 ILVDVERGRTVKGW 186 (335)
T ss_pred EEEEeccccccccc
Confidence 99999887655443
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=3.7e-13 Score=128.58 Aligned_cols=169 Identities=22% Similarity=0.386 Sum_probs=122.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC--CCCcccEEEEEecCHHHHHHHHH-hCCcccC---CeeE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA--DGRFKGYGHVEFASVEDAHKAIE-LNGQMLG---NRAI 486 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~---gr~i 486 (675)
.+.-|||||.+||.++.-.+|+.||..|---..+.|.+.. ..-.+-+|||.|.+...|..|+. |||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457999999999999999999999998777777666553 23366899999999999999997 9999995 7889
Q ss_pred EEEeccccCCCCCCCCCCC----------CCC--------------------ccC-------------------------
Q 045516 487 RLDFARERGAYTPYSGGNE----------SNS--------------------FQK------------------------- 511 (675)
Q Consensus 487 ~V~~a~~~~~~~~~~~~~~----------~~~--------------------~~~------------------------- 511 (675)
+|++++.........+... ..+ ++.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 9999875432211111000 000 000
Q ss_pred -------------CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHH
Q 045516 512 -------------GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFN 578 (675)
Q Consensus 512 -------------~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~ 578 (675)
........||||.||..+|++++ |+++|..|-....++|... .| ...|||.|.+.+.|.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~----l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at 262 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDE----LKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQAT 262 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHH----HHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHH
Confidence 00112357999999999999999 5566666666555555432 12 457999999999999
Q ss_pred HHHH-hCCceeC
Q 045516 579 KALE-MSGTEIG 589 (675)
Q Consensus 579 ~Al~-lng~~~~ 589 (675)
.||. |.|..|-
T Consensus 263 ~am~~lqg~~~s 274 (284)
T KOG1457|consen 263 DAMNHLQGNLLS 274 (284)
T ss_pred HHHHHhhcceec
Confidence 9998 9887763
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.4e-13 Score=112.43 Aligned_cols=69 Identities=43% Similarity=0.775 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 419 LFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 419 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
|||+|||+++++++|+++|..||.|..|+|..+..+.++|+|||+|.+.++|.+||. +++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 899999999999999999999999999999999888999999999999999999998 777999999885
No 60
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=8.6e-14 Score=134.65 Aligned_cols=77 Identities=27% Similarity=0.545 Sum_probs=73.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
+.||||||+|.+..+.|+++|++||+|+...|+.|+ +|+++||+||+|.+.+.|.+|+.--+-.|+||+..|.++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 589999999999999999999999999999999998 99999999999999999999999667789999999998865
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.8e-13 Score=132.78 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
.+.++|-|.||+.++++.+|++||..||.|..|+|.+++ +|.++|||||.|.+.++|.+||. |||+-++...|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 467899999999999999999999999999999999998 99999999999999999999998 9999999999999999
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
.++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 764
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6.5e-13 Score=122.86 Aligned_cols=79 Identities=20% Similarity=0.423 Sum_probs=71.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.+.|||+||+..++..+ |+.+|..||.|..|.|...+ .|||||+|.++-+|..|+. |+|..|+|..|+|.
T Consensus 10 ~~kVYVGnL~~~a~k~e----LE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRE----LERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CceEEeccCCCCcchHH----HHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 68999999999999998 88999999999999998864 7999999999999999998 99999999999999
Q ss_pred ccccCCCCC
Q 045516 597 EAKQRGDFG 605 (675)
Q Consensus 597 ~a~~r~~~~ 605 (675)
+...+....
T Consensus 81 ~S~G~~r~~ 89 (195)
T KOG0107|consen 81 LSTGRPRGS 89 (195)
T ss_pred eecCCcccc
Confidence 887655433
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=8.2e-14 Score=131.62 Aligned_cols=84 Identities=29% Similarity=0.542 Sum_probs=79.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 410 ~~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
.|...+..+|.|-||.|.++.++|+.+|++||.|.+|+|+.+. ++.++|||||.|....+|+.||+ |+|.+|+|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4567789999999999999999999999999999999999998 99999999999999999999998 999999999999
Q ss_pred EEeccc
Q 045516 488 LDFARE 493 (675)
Q Consensus 488 V~~a~~ 493 (675)
|+++.-
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 999863
No 64
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=2.8e-13 Score=133.50 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+||++.+|+++|++||+.||.|.+|+|+++ +...|||||+|.+++.+..||.|||..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 4689999999999999999999999999999999987 4556899999999999999999999999999999987654
No 65
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.7e-14 Score=133.63 Aligned_cols=81 Identities=28% Similarity=0.562 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
.++--||||||||.+|+.+|.-+|++||+|++|.|++|. ||+++||||+.|.+..+...|+. |||..|.||.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 356789999999999999999999999999999999998 99999999999999999999997 9999999999999877
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 543
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3e-13 Score=118.55 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.+++|||+||.+.+++++ |.++|++||.|..|.|-.|+.+-.+-|||||+|.+.++|..||. ++|..|+.+.|+|
T Consensus 35 ~S~tvyVgNlSfyttEEq----iyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQ----IYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHH----HHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 379999999999999998 78999999999999999999999999999999999999999999 9999999999999
Q ss_pred eccc
Q 045516 596 DEAK 599 (675)
Q Consensus 596 ~~a~ 599 (675)
+|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 9864
No 67
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=6e-13 Score=123.63 Aligned_cols=76 Identities=20% Similarity=0.386 Sum_probs=68.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|||+|||.++.+.+ |+++|-+||.|..|.|...+ .+-.||||+|.++-+|..||. -+|..|+|+.|+|.
T Consensus 6 ~~~iyvGNLP~diReke----ieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKE----IEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred cceEEecCCCcchhhcc----HHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 68999999999999988 78999999999999886542 346899999999999999998 99999999999999
Q ss_pred cccc
Q 045516 597 EAKQ 600 (675)
Q Consensus 597 ~a~~ 600 (675)
|++.
T Consensus 79 fprg 82 (241)
T KOG0105|consen 79 FPRG 82 (241)
T ss_pred eccC
Confidence 9863
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.8e-12 Score=109.54 Aligned_cols=80 Identities=21% Similarity=0.458 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++.|||+|||+.+|.+++.+||..||.|..|+|-.. ...+|.|||.|.+..+|.+|+. |+|..+.++.|.|-+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 356789999999999999999999999999999999764 3458999999999999999997 9999999999999887
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
+..
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 643
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=8.9e-13 Score=138.31 Aligned_cols=76 Identities=28% Similarity=0.450 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCH--HHHHHHHH-hCCcccCCeeEEEEec
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASV--EDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~--e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...+||||||+|.+++++|+.+|..||.|.+|.|++. +| +|||||+|.+. ..+.+||. |||..|+||.|+|..+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4579999999999999999999999999999999933 56 99999999987 78999998 9999999999999988
Q ss_pred cc
Q 045516 492 RE 493 (675)
Q Consensus 492 ~~ 493 (675)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 75
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=9.4e-13 Score=132.55 Aligned_cols=80 Identities=31% Similarity=0.571 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
...++|+|.||||...+-||+.+|.+||.|++|.|+.+..| +|||+||+|.+.++|.+|-+ |||..|.||.|.|..+.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45689999999999999999999999999999999987544 69999999999999999997 99999999999999998
Q ss_pred cc
Q 045516 493 ER 494 (675)
Q Consensus 493 ~~ 494 (675)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 76
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.38 E-value=1.1e-11 Score=128.09 Aligned_cols=173 Identities=20% Similarity=0.266 Sum_probs=135.4
Q ss_pred CceEEEcCCC-CCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLP-FSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
+..|.|.||. +.+|.+-|..+|.-||.|.+|.|++++ +-.|+|.|.+...|+.|+. |+|..|.|+.|+|.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6899999995 678999999999999999999999875 4789999999999999998 999999999999999986
Q ss_pred cCCCCCCCCCCC-----------CCCccC------CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecc
Q 045516 494 RGAYTPYSGGNE-----------SNSFQK------GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPK 556 (675)
Q Consensus 494 ~~~~~~~~~~~~-----------~~~~~~------~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~ 556 (675)
.....+..+... -..|.. ....+++.+|++.|+|..+++++ |+.+|..-|.......+.
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~----lk~~f~~~g~~vkafkff 448 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEED----LKNLFQEPGGQVKAFKFF 448 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhH----HHHhhhcCCceEEeeeec
Confidence 554433322111 011111 12346788999999999999999 566666657554433322
Q ss_pred cCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCe-eeEEecccc
Q 045516 557 DYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGY-SLVVDEAKQ 600 (675)
Q Consensus 557 d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr-~l~V~~a~~ 600 (675)
+..+-++++.|.+.+.|..|+- +|++.+++. .|+|.|.+.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 2237799999999999999987 999999865 899998764
No 72
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=8.1e-13 Score=116.78 Aligned_cols=86 Identities=27% Similarity=0.492 Sum_probs=80.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 410 TPQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 410 ~~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
++..-+...|||.|+...+++++|.+.|..||+|.+|+|-.++ +|..+|||+|+|.+...|+.||. |||..|+|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3345688999999999999999999999999999999999998 99999999999999999999997 999999999999
Q ss_pred EEeccccC
Q 045516 488 LDFARERG 495 (675)
Q Consensus 488 V~~a~~~~ 495 (675)
|+|+-..+
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99997654
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=3.2e-12 Score=103.34 Aligned_cols=71 Identities=49% Similarity=0.844 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
+|||+|||..++.++|+++|..||.|..|++..+. +.++|||||+|.+.+.|..|+. +++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 69999999999999999999999999999999877 7789999999999999999998 99999999999873
No 74
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.36 E-value=4.9e-12 Score=136.10 Aligned_cols=76 Identities=22% Similarity=0.424 Sum_probs=66.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
..+|||+|||++++..+|+++|..||.|...+|.... .+....||||+|.+...++.||..+-..|+++.|.|..-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 3459999999999999999999999999999987654 455559999999999999999998888888898888654
No 75
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-11 Score=131.72 Aligned_cols=182 Identities=15% Similarity=0.257 Sum_probs=124.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-C--CCccc---EEEEEecCHHHHHHHHHhCCcccCCeeEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-D--GRFKG---YGHVEFASVEDAHKAIELNGQMLGNRAIR 487 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~--g~~kG---~afV~F~~~e~A~~Al~l~g~~~~gr~i~ 487 (675)
.-++.||||+||+.++++.|...|..||.|.-=+-.+.. . -..+| |+|+.|.++..+...|.-.-..-.+..|.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 457899999999999999999999999987654443221 1 22466 99999999999998885111122223333
Q ss_pred EEeccccCC---CCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCee
Q 045516 488 LDFARERGA---YTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVK 564 (675)
Q Consensus 488 V~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~r 564 (675)
|...+-+.. ..++................+.+||||++||.-++..+|-.+|.++ ||.|.++-|-+|.+-..++
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l---yGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL---FGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh---cCceEEEEeccCcccCCCC
Confidence 332222211 1122211111111122344568999999999999999976666666 5899999999999899999
Q ss_pred eEEEEEeCCHHHHHHHHHhCCceeCC----eeeEEecc
Q 045516 565 GIAYLDFTDADSFNKALEMSGTEIGG----YSLVVDEA 598 (675)
Q Consensus 565 G~afV~F~~~e~A~~Al~lng~~~~G----r~l~V~~a 598 (675)
|-|-|.|.+.....+||...-..|+. .+|.|...
T Consensus 414 GaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred CcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 99999999999999999744444432 35555533
No 76
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=4.2e-12 Score=129.83 Aligned_cols=181 Identities=20% Similarity=0.231 Sum_probs=134.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhC----CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEV----AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~ 490 (675)
..-.|.+++|||+++..+|.+||..- |-+..|.|++..+|+..|-|||.|.++++|+.||..|...|+.|.|.|..
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34568899999999999999999742 35678888888899999999999999999999999888888888887754
Q ss_pred cccc--------CCCCCCCCCCCC-----CCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE--EEec
Q 045516 491 ARER--------GAYTPYSGGNES-----NSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR--ISVP 555 (675)
Q Consensus 491 a~~~--------~~~~~~~~~~~~-----~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~--v~i~ 555 (675)
++.. ....+..++... ....-........+|.+++||+..+.++|..+|.++-- .|.. |++.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~---~i~f~gVHmv 316 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFAT---DIRFQGVHMV 316 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhh---hcccceeEEE
Confidence 4321 110011110000 01111112233678999999999999998887776531 3333 7777
Q ss_pred ccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccc
Q 045516 556 KDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 599 (675)
Q Consensus 556 ~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~ 599 (675)
.+. .|++.|-|||+|.+.+.|..|+. .|.+.+..|.|.|..+.
T Consensus 317 ~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 317 LNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred EcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 764 49999999999999999999998 77777779999887664
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3e-12 Score=124.37 Aligned_cols=80 Identities=30% Similarity=0.494 Sum_probs=77.3
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|.|.||+.++++.+ |+++|..||.|.+|.|.+|..||.++|||||.|.+.++|.+||. |||+-+++-.|+|.
T Consensus 189 ~~tvRvtNLsed~~E~d----L~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDD----LEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cceeEEecCccccChhH----HHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 68999999999999999 78899999999999999999999999999999999999999999 99999999999999
Q ss_pred ccccC
Q 045516 597 EAKQR 601 (675)
Q Consensus 597 ~a~~r 601 (675)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99986
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.32 E-value=8e-12 Score=101.54 Aligned_cols=69 Identities=29% Similarity=0.633 Sum_probs=65.3
Q ss_pred EEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 521 lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
|||+|||..+++.+ |+++|..||.|..+.+..+ .++..++||||+|.+.++|..|+. |||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~----l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEE----LRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHH----HHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHH----HHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999998 7788999999999999998 779999999999999999999999 999999999986
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.30 E-value=1.1e-11 Score=133.27 Aligned_cols=82 Identities=27% Similarity=0.391 Sum_probs=69.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
..+|||.|||.+++..+ |+++|..||.|...+|......+...+||||+|.+...+..||+.+-..|++++|.|..
T Consensus 288 ~~~i~V~nlP~da~~~~----l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAE----LEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHH----HHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 34599999999999998 88899999999999888754233334999999999999999999889999999999998
Q ss_pred cccCCC
Q 045516 598 AKQRGD 603 (675)
Q Consensus 598 a~~r~~ 603 (675)
-+++..
T Consensus 364 k~~~~~ 369 (419)
T KOG0116|consen 364 KRPGFR 369 (419)
T ss_pred cccccc
Confidence 776444
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.30 E-value=1.9e-10 Score=117.55 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=128.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH---hCCcccCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE---LNGQMLGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~---l~g~~~~gr~i~V~~ 490 (675)
..+-.|.|+||-..+++.+|.+-++.||.|..|.++.. +..+.|+|.+.+.|..++. -|...+.|+...+.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 44568999999999999999999999999999887754 6789999999999999996 466778888888888
Q ss_pred ccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCC--CCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEE
Q 045516 491 ARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD--SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAY 568 (675)
Q Consensus 491 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp--~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~af 568 (675)
+.......+.. ....+...|.+.-|+ +.++-+- |..++..+|.|.+|.|++.. --.|.
T Consensus 104 Stsq~i~R~g~-----------es~~pN~VLl~TIlNp~YpItvDV----ly~Icnp~GkVlRIvIfkkn-----gVQAm 163 (494)
T KOG1456|consen 104 STSQCIERPGD-----------ESATPNKVLLFTILNPQYPITVDV----LYTICNPQGKVLRIVIFKKN-----GVQAM 163 (494)
T ss_pred chhhhhccCCC-----------CCCCCCeEEEEEeecCccccchhh----hhhhcCCCCceEEEEEEecc-----ceeeE
Confidence 76544322211 112235566655554 5566554 89999999999999998862 34699
Q ss_pred EEeCCHHHHHHHHH-hCCceeC-C-eeeEEeccccCC
Q 045516 569 LDFTDADSFNKALE-MSGTEIG-G-YSLVVDEAKQRG 602 (675)
Q Consensus 569 V~F~~~e~A~~Al~-lng~~~~-G-r~l~V~~a~~r~ 602 (675)
|+|.+.+.|++|.. |||..|. | +.|.|+|++|-+
T Consensus 164 VEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 164 VEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred EeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 99999999999998 9999885 3 578999998743
No 81
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=1.9e-11 Score=99.34 Aligned_cols=73 Identities=49% Similarity=0.836 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
+|||+|||+.+++++|+++|..||.|..+.|..+..+.++|+|||+|.+.+.|..|+. +++..|.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999998866889999999999999999998 999999999999864
No 82
>PF03546 Treacle: Treacher Collins syndrome protein Treacle; InterPro: IPR003993 Treacher Collins Syndrome (TCS) is an autosomal dominant disorder of craniofacial development, the features of which include conductive hearing loss and cleft palate [, ]; it is the most common of the human mandibulo-facial dysostosis disorders []. The TCS locus has been mapped to human chromosome 5q31.3-32 and the mutated gene identified (TCOF1) []. To date, 35 mutations have been reported in TCOF1, all but one of which result in the introduction of a premature-termination codon into the predicted protein, Treacle. The observed mutational spectrum supports the hypothesis that TCS results from haploinsufficiency. Treacle is a low complexity protein of 1,411 amino acids whose predicted protein structure contains a set of highly polar repeated motifs []. These motifs are common to nucleolar trafficking proteins in other species and are predicted to be phosphorylated by casein kinase. In concert with this observation, the full-length TCOF1 protein sequence also contains putative nuclear and nucleolar localisation signals []. Throughout the open reading frame are found mutations in TCS families and several polymorphisms. It has thus been suggested that TCS results from defects in a nucleolar trafficking protein that is critically required during human craniofacial development.
Probab=99.29 E-value=7.4e-11 Score=125.68 Aligned_cols=35 Identities=43% Similarity=0.558 Sum_probs=24.8
Q ss_pred CccccCcccccccCCCCCCCCCCCCCCCCCCccCCC
Q 045516 209 STAKKGTVAATKKSTGSSDDDSSSSEDSSESEEDNG 244 (675)
Q Consensus 209 ~~~k~~~~~~~~~~~~~~~~~sssse~~s~~e~~~~ 244 (675)
++.|.++++++.+.. ....+|+|||++|+++++..
T Consensus 199 ppqk~gpvatq~k~~-~~~~~SeSSEesS~SeeEa~ 233 (519)
T PF03546_consen 199 PPQKAGPVATQAKAE-RPKEDSESSEESSDSEEEAP 233 (519)
T ss_pred CccccCccccccccc-cccccccccccccccccccc
Confidence 356889999988764 45555666777777777764
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=8.6e-12 Score=135.58 Aligned_cols=183 Identities=25% Similarity=0.445 Sum_probs=145.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhC-----------CC-eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEV-----------AE-VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQM 480 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~-----------G~-I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~ 480 (675)
....+.+||+|||+.++++.+..||..- |+ |+.|.|-. .++||||+|.+.+.|..|+.+++..
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhcccchh
Confidence 5678999999999999999999999863 22 56666543 4899999999999999999999999
Q ss_pred cCCeeEEEEeccccCCCCCCCCC-----CCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEec
Q 045516 481 LGNRAIRLDFARERGAYTPYSGG-----NESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVP 555 (675)
Q Consensus 481 ~~gr~i~V~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~ 555 (675)
|.|+.+++......+........ ...............+.|||+|||..+++..++++|. .||.+....++
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~----~fg~lk~f~lv 322 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD----SFGPLKAFRLV 322 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH----hcccchhheee
Confidence 99999998655443322211111 1112222233344578999999999999999665555 45999999999
Q ss_pred ccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 556 KDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 556 ~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
.+..+|.++||||.+|.+......|+. |||..+++..|.|..+......
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 999999999999999999999999999 9999999999999998765443
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=2.1e-11 Score=98.09 Aligned_cols=69 Identities=43% Similarity=0.751 Sum_probs=65.0
Q ss_pred EcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 421 VGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 421 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
|+|||+.++.++|+.+|..||.|..|.|..+. ++.++|||||+|.+.+.|..|+. |++..|.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999887 68999999999999999999997 99999999999873
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.5e-11 Score=123.47 Aligned_cols=76 Identities=24% Similarity=0.404 Sum_probs=70.5
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.++|||+||++.+++.+ |++||+.||.|.+|+|+++.. .+|||||+|.+.+.|..||.|||..|+|+.|+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~d----LrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERD----IKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEe
Confidence 58999999999999998 789999999999999998853 47999999999999999999999999999999998
Q ss_pred ccc
Q 045516 598 AKQ 600 (675)
Q Consensus 598 a~~ 600 (675)
+..
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 753
No 86
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.9e-12 Score=121.23 Aligned_cols=83 Identities=30% Similarity=0.534 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
...-|||||++|...+++.-|...|-.||.|.+|.|+.|. +++++||+||+|.-.++|..||. ||+..|.||.|+|.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4556899999999999999999999999999999999998 89999999999999999999997 999999999999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+.+..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98653
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.5e-11 Score=117.69 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=74.3
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
-..|||+||++.+..+. |+++|.+||+|....|+.|+.+|+++||+||+|.+.+.|.+|+.--+-.|+||+..|.+
T Consensus 12 ~TKifVggL~w~T~~~~----l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKET----LRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHH----HHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 57899999999999888 88999999999999999999999999999999999999999999778899999999998
Q ss_pred ccc
Q 045516 598 AKQ 600 (675)
Q Consensus 598 a~~ 600 (675)
+..
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 865
No 88
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=2e-11 Score=132.24 Aligned_cols=78 Identities=37% Similarity=0.707 Sum_probs=75.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecccc
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~ 494 (675)
+.||||||||.+++++|..+|+.+|.|.+++|++|+ +|+++||||++|.+.+.+..|+. |||..|.||.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999998 99999999999999999999998 9999999999999998754
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=8.1e-11 Score=96.06 Aligned_cols=69 Identities=29% Similarity=0.641 Sum_probs=62.6
Q ss_pred EEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 521 IFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 521 lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
|||+|||+.++.++ |..+|..||.|..|.+..+.. |..+|+|||+|.+.+.|..|+. +++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~----l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEED----LRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHH----HHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHH----HHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999988 778899999999999999977 9999999999999999999999 888999999885
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3.3e-11 Score=106.71 Aligned_cols=87 Identities=26% Similarity=0.459 Sum_probs=80.1
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
.....+|||.++....++++ +.+.|..||.|..|+|-.|+.||..+|||+|+|.+...|+.||. |||..|.|+.|
T Consensus 69 SVEGwIi~VtgvHeEatEed----i~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEED----IHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHH----HHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34478999999999999998 78889999999999999999999999999999999999999998 99999999999
Q ss_pred EEeccccCCCCC
Q 045516 594 VVDEAKQRGDFG 605 (675)
Q Consensus 594 ~V~~a~~r~~~~ 605 (675)
.|+|+..++..+
T Consensus 145 ~VDw~Fv~gp~~ 156 (170)
T KOG0130|consen 145 SVDWCFVKGPER 156 (170)
T ss_pred eEEEEEecCCcc
Confidence 999998766543
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=8.8e-11 Score=99.45 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=71.1
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.+.|||+|||+.++.++ +.++|++||.|..|+|-....| +|.|||.|.+..+|.+|+. |+|..+.++.|.|-
T Consensus 18 nriLyirNLp~~ITsee----mydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEE----MYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred heeEEEecCCccccHHH----HHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 68999999999999998 8899999999999999877654 8999999999999999998 99999999999998
Q ss_pred ccccC
Q 045516 597 EAKQR 601 (675)
Q Consensus 597 ~a~~r 601 (675)
+..+-
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 87653
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=6.2e-12 Score=120.03 Aligned_cols=147 Identities=22% Similarity=0.306 Sum_probs=119.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....+||||+||-..++++-|.++|-+.|+|..|.|+.+.++..+ ||||.|.++-.+.-|++ +||..|.++.|.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345689999999999999999999999999999999999888877 99999999999999999 8999999999998764
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
..... .- |...++.+ ++...|...|.|..+++.++++ |+.+.++||.+
T Consensus 85 ~G~sh----------------------ap-----ld~r~~~e----i~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~ 132 (267)
T KOG4454|consen 85 CGNSH----------------------AP-----LDERVTEE----ILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTY 132 (267)
T ss_pred cCCCc----------------------ch-----hhhhcchh----hheeeecccCCCCCcccccccc-CCccCccchhh
Confidence 32110 00 22234443 3778899999999999999977 89999999998
Q ss_pred CCHHHHHHHHH-hCCceeCCee
Q 045516 572 TDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 572 ~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
......-.++. ..+..+.-+.
T Consensus 133 qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 133 QRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred hhhhcCcHHhhhhcccCcCCCC
Confidence 88777777776 5555444333
No 93
>PF03546 Treacle: Treacher Collins syndrome protein Treacle; InterPro: IPR003993 Treacher Collins Syndrome (TCS) is an autosomal dominant disorder of craniofacial development, the features of which include conductive hearing loss and cleft palate [, ]; it is the most common of the human mandibulo-facial dysostosis disorders []. The TCS locus has been mapped to human chromosome 5q31.3-32 and the mutated gene identified (TCOF1) []. To date, 35 mutations have been reported in TCOF1, all but one of which result in the introduction of a premature-termination codon into the predicted protein, Treacle. The observed mutational spectrum supports the hypothesis that TCS results from haploinsufficiency. Treacle is a low complexity protein of 1,411 amino acids whose predicted protein structure contains a set of highly polar repeated motifs []. These motifs are common to nucleolar trafficking proteins in other species and are predicted to be phosphorylated by casein kinase. In concert with this observation, the full-length TCOF1 protein sequence also contains putative nuclear and nucleolar localisation signals []. Throughout the open reading frame are found mutations in TCS families and several polymorphisms. It has thus been suggested that TCS results from defects in a nucleolar trafficking protein that is critically required during human craniofacial development.
Probab=99.17 E-value=2.5e-10 Score=121.66 Aligned_cols=37 Identities=35% Similarity=0.610 Sum_probs=31.9
Q ss_pred cccccccchhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045516 119 VAAKNGAVAATAKKSKPDSSSSDSSDDDSDEDEVPTS 155 (675)
Q Consensus 119 ~~~k~~~~~~~~~~~k~~~~s~~ss~~~s~e~e~~~~ 155 (675)
.+.|.++++.+++.++++.+|++|+|++++|+|.|++
T Consensus 4 ~pgk~gp~a~qaka~kpeedseSSsEeSdSe~E~pa~ 40 (519)
T PF03546_consen 4 PPGKTGPLATQAKAGKPEEDSESSSEESDSEEEAPAA 40 (519)
T ss_pred CCCCcCccccccccccccccccccccccccccccccc
Confidence 4678899999999999999999999988888887763
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-11 Score=116.93 Aligned_cols=82 Identities=27% Similarity=0.530 Sum_probs=76.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
-++|||++|...+++.- |...|-.||.|..|.|+.|+.++++|||+||+|.-.++|..||. ||+..|.||.|+|.
T Consensus 10 KrtlYVGGladeVtekv----LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKV----LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ceeEEeccchHHHHHHH----HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 68999999998888875 88999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCCC
Q 045516 597 EAKQRGD 603 (675)
Q Consensus 597 ~a~~r~~ 603 (675)
+++|-.-
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9987543
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.16 E-value=7e-11 Score=124.28 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=69.3
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCH--HHHHHHHH-hCCceeCCeeeE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA--DSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~--e~A~~Al~-lng~~~~Gr~l~ 594 (675)
..+|||+||.+.+++++ |+.+|..||.|.+|.|+ +.+| ||||||+|.+. ..+.+||. |||..|.||.|+
T Consensus 10 gMRIYVGNLSydVTEDD----LravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 10 GVRLHVGGLGESVGRDD----LLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred ceEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 68999999999999999 78889999999999999 4567 99999999987 78999998 999999999999
Q ss_pred Eecccc
Q 045516 595 VDEAKQ 600 (675)
Q Consensus 595 V~~a~~ 600 (675)
|..|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999865
No 96
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=7.9e-12 Score=116.15 Aligned_cols=77 Identities=31% Similarity=0.488 Sum_probs=72.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
+..|||+|||+.+++.+ |--+|++||+|..|.|++|..||.++||||+.|.+..+-..|+. |||..|.||.|+|+
T Consensus 35 sA~Iyiggl~~~LtEgD----il~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGD----ILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCc----EEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 67899999999999998 67899999999999999999999999999999999999999997 99999999999998
Q ss_pred cc
Q 045516 597 EA 598 (675)
Q Consensus 597 ~a 598 (675)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 54
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.6e-10 Score=114.23 Aligned_cols=75 Identities=21% Similarity=0.394 Sum_probs=69.4
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
..+|||+||++.+++.+ |++||+.||.|.+|+|+++ +...+||||+|.+.+.+..||.|||..|.++.|.|..
T Consensus 5 g~TV~V~NLS~~tTE~d----LrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKD----VYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHH----HHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 68999999999999998 8899999999999999998 4556899999999999999999999999999999986
Q ss_pred cc
Q 045516 598 AK 599 (675)
Q Consensus 598 a~ 599 (675)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 53
No 98
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.14 E-value=6.8e-10 Score=114.95 Aligned_cols=172 Identities=23% Similarity=0.341 Sum_probs=126.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCccc-EEEEEecCHHHHHHHHH-hCCcccCC--eeEEEEec
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKG-YGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLDFA 491 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG-~afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~~a 491 (675)
--+++|.|+-+-++.+-|..+|+.||.|..|..... +.| .|+|.|.+...|+.|.. |+|..|.. ..|+|+|+
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 357899999999999999999999999988865542 234 48999999999999986 99998854 44666665
Q ss_pred cccCC-----------CC-CCC-CC-----------------------CC--CCC-----ccCCCCCC--CceEEEEecC
Q 045516 492 RERGA-----------YT-PYS-GG-----------------------NE--SNS-----FQKGGRGQ--AAHTIFIKGF 526 (675)
Q Consensus 492 ~~~~~-----------~~-~~~-~~-----------------------~~--~~~-----~~~~~~~~--~~~~lfV~nL 526 (675)
.-... ++ +.. .+ +. ... ...+.... ....|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 42110 00 000 00 00 000 00000111 2578888998
Q ss_pred CC-CcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 527 DS-SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 527 p~-~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
.. .+|.+- |..+|+-||.|.+|.|+.+. +-.|+|+|.+...|..|+. |+|+.|.|+.|+|.+.+-
T Consensus 306 n~~~VT~d~----LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 306 NEEAVTPDV----LFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred chhccchhH----HHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 65 466665 88999999999999999875 3579999999999999999 999999999999999864
No 99
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=7.5e-11 Score=118.99 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=74.0
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|+|.|||+.+.+.+ |+.+|.+||.|.+|.|+.+. .-++||+||+|.+.++|.+|.+ |||..+.||.|.|
T Consensus 95 ~pkRLhVSNIPFrFRdpD----L~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPD----LRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCceeEeecCCccccCcc----HHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 468999999999999998 78899999999999999873 4579999999999999999998 9999999999999
Q ss_pred eccccCCC
Q 045516 596 DEAKQRGD 603 (675)
Q Consensus 596 ~~a~~r~~ 603 (675)
..+..|-.
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99987744
No 100
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.14 E-value=3.6e-10 Score=117.52 Aligned_cols=80 Identities=26% Similarity=0.492 Sum_probs=72.0
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..+.+||.||||++.|++|++++++. .|+|++|.|+.| ..|++||+|.|+|.+++.+++|++ ||.+.+.||.|.|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrek---vGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREK---VGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHh---cCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 35679999999999999977776664 699999999999 469999999999999999999999 9999999999999
Q ss_pred ecccc
Q 045516 596 DEAKQ 600 (675)
Q Consensus 596 ~~a~~ 600 (675)
.....
T Consensus 119 KEd~d 123 (608)
T KOG4212|consen 119 KEDHD 123 (608)
T ss_pred eccCc
Confidence 87754
No 101
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.08 E-value=3e-10 Score=108.34 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhC-CCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEV-AEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
.....+||..||+.+.+.+|..+|.+| |.|..++|.+++ ||.++|||||+|.+++.|.-|.+ ||++.|+|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445789999999999999999999998 788999997776 99999999999999999999998 999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8654
No 102
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.06 E-value=6.2e-10 Score=115.83 Aligned_cols=85 Identities=24% Similarity=0.430 Sum_probs=79.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
..+.|||++||.++++.+|+++|.+||.|..+.|+++. +.+.+||+||.|.+.+.+.+++.+..+.|.|+.+.|..+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46799999999999999999999999999999999998 89999999999999999999999999999999999999988
Q ss_pred cCCCCC
Q 045516 494 RGAYTP 499 (675)
Q Consensus 494 ~~~~~~ 499 (675)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 765443
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=6.4e-10 Score=86.71 Aligned_cols=55 Identities=42% Similarity=0.761 Sum_probs=50.2
Q ss_pred HHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 433 VQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 433 L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
|+++|++||.|..|.+.... +++|||+|.+.++|..|+. |||..|.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998653 6999999999999999998 9999999999999885
No 104
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=7.9e-10 Score=89.15 Aligned_cols=71 Identities=37% Similarity=0.733 Sum_probs=64.3
Q ss_pred EEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 520 ~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
+|||.|||..++.++ |+.+|..||.|..+.+..+. +.++|+|||+|.+...|..|+. +++..|.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~----l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEED----LKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHH----HHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999988 66777888999999999876 7789999999999999999998 99999999999874
No 105
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.03 E-value=4.3e-10 Score=115.50 Aligned_cols=79 Identities=32% Similarity=0.622 Sum_probs=75.0
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|||+||++.+++++ |..+|..||.|..|+|..+..+|.++|||||.|.+.+.+..|+. |++..|.|+.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~----l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEED----LRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHH----HHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 59999999999999998 78899999999999999999999999999999999999999998 99999999999999
Q ss_pred cccc
Q 045516 597 EAKQ 600 (675)
Q Consensus 597 ~a~~ 600 (675)
+...
T Consensus 191 ~~~~ 194 (306)
T COG0724 191 KAQP 194 (306)
T ss_pred cccc
Confidence 9653
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=8.9e-10 Score=90.15 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=53.3
Q ss_pred HHHHHHHhh----hCCCeEEEE-EeeCC-C--CCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 430 QADVQNFFS----EVAEVVDVR-LSSDA-D--GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 430 e~~L~~~F~----~~G~I~~v~-i~~~~-~--g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
+++|+++|. .||.|..|. |+.+. + ++++|||||.|.+.++|.+||. |||..|.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999999996 66655 4 8899999999999999999998 9999999999986
No 107
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=2.6e-10 Score=111.80 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
.+.|.|||-.||....+.+|..+|-.||.|++.++..|+ ++.++.|+||.|.++..++.||. |||+.|+-++|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 478999999999999999999999999999999999999 99999999999999999999998 9999999999999998
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
+++..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 87754
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=2.2e-10 Score=128.82 Aligned_cols=159 Identities=21% Similarity=0.350 Sum_probs=133.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||++||...+++.+|+..|..||.|..|.|-.-.-++-.-|+||.|.+...+..|+. +.+..|....+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 356799999999999999999999999999999999877667777899999999999999885 8888886666666554
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
... ..+.+.+||++|..-+.... |...|..||.|..|.|... .-|+||.|
T Consensus 449 ~~k--------------------st~ttr~~sgglg~w~p~~~----l~r~fd~fGpir~Idy~hg------q~yayi~y 498 (975)
T KOG0112|consen 449 QPK--------------------STPTTRLQSGGLGPWSPVSR----LNREFDRFGPIRIIDYRHG------QPYAYIQY 498 (975)
T ss_pred ccc--------------------cccceeeccCCCCCCChHHH----HHHHhhccCcceeeecccC------Ccceeeec
Confidence 321 22368899999998887765 8899999999999877543 46999999
Q ss_pred CCHHHHHHHHH-hCCceeCC--eeeEEeccccC
Q 045516 572 TDADSFNKALE-MSGTEIGG--YSLVVDEAKQR 601 (675)
Q Consensus 572 ~~~e~A~~Al~-lng~~~~G--r~l~V~~a~~r 601 (675)
.+...+..|+. |.|..|+| +.|+|.|+.+-
T Consensus 499 es~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 499 ESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred ccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 99999999998 99999986 67999988643
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=1.5e-09 Score=88.86 Aligned_cols=65 Identities=17% Similarity=0.360 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhcccCcEEEEE-ecccCCC--CCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 532 EDQVRASLEEHFGSCGEITRIS-VPKDYDT--GSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 532 e~~i~~~L~~~F~~~G~I~~v~-i~~d~~t--G~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
+++|+++|...+..||.|..|. |+.+..+ +.++|||||.|.+.++|..|+. |||..|.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 3566666666666999999996 7776666 9999999999999999999998 99999999999873
No 110
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.99 E-value=4e-10 Score=105.18 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=74.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
..+|||+||+..++++. |+++|-++|.|.+|+|++|+.+..++|||||+|.+.++|.-|+. ||...|.|++|+|.
T Consensus 9 d~tiyvgnld~kvs~~~----l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEEL----LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred CceEEEecCCHHHHHHH----HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 68999999999998876 78889999999999999999999999999999999999999999 99999999999999
Q ss_pred ccccC
Q 045516 597 EAKQR 601 (675)
Q Consensus 597 ~a~~r 601 (675)
.+...
T Consensus 85 kas~~ 89 (203)
T KOG0131|consen 85 KASAH 89 (203)
T ss_pred ecccc
Confidence 88743
No 111
>smart00360 RRM RNA recognition motif.
Probab=98.98 E-value=1.4e-09 Score=87.30 Aligned_cols=70 Identities=34% Similarity=0.638 Sum_probs=63.6
Q ss_pred EecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 523 IKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 523 V~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
|+|||..+++++ |+.+|..||.|..|.|..+..++.++|||||+|.+.+.|..|+. |++..|+|+.|+|.
T Consensus 1 i~~l~~~~~~~~----l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEE----LRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHH----HHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 578999999988 66777888999999999988889999999999999999999998 99999999999874
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=8e-11 Score=131.92 Aligned_cols=148 Identities=19% Similarity=0.244 Sum_probs=127.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
.+..++||.||+..+.+.+|..+|..||.|..|+|.... +++++|+|||+|..++++.+||.++...|.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 456799999999999999999999999999888887444 7999999999999999999999976666655
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
...|||.|+|+..|.++ |+.+|..+|.+..++++..+. |.++|.+||.|.
T Consensus 736 -------------------------K~~v~i~g~pf~gt~e~----~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~ 785 (881)
T KOG0128|consen 736 -------------------------KISVAISGPPFQGTKEE----LKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYN 785 (881)
T ss_pred -------------------------hhhhheeCCCCCCchHH----HHhhccccCCccccchhhhhc-cccccceeccCC
Confidence 14578999999999987 788999999999999887754 999999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 573 DADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 573 ~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
+..++.+++. ++...+.-+.+.|....|
T Consensus 786 ~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 786 TEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999999987 877777766666666444
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.97 E-value=9.1e-10 Score=119.42 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=78.7
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
+.|||+|+|+.+++++ |..+|...|.|..++++.|++||.++||||++|.+.+.|..|+. |||..|+||.|+|.|
T Consensus 19 ~~v~vgnip~~~se~~----l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQ----LLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHH----HHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 8999999999999998 77888899999999999999999999999999999999999998 999999999999999
Q ss_pred cccCCCCCC
Q 045516 598 AKQRGDFGS 606 (675)
Q Consensus 598 a~~r~~~~~ 606 (675)
+..+....+
T Consensus 95 ~~~~~~~~~ 103 (435)
T KOG0108|consen 95 ASNRKNAER 103 (435)
T ss_pred ccccchhHH
Confidence 987666543
No 114
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=108.78 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..+.+|||+||.+.++..+|+..|..||+|..|.|+ ++|+||.|...++|..||. |||..|+|++|+|+++.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 346799999999999999999999999999999999 6799999999999999997 99999999999999998
Q ss_pred ccCCCCCC
Q 045516 493 ERGAYTPY 500 (675)
Q Consensus 493 ~~~~~~~~ 500 (675)
.+-...+.
T Consensus 149 srlrtapg 156 (346)
T KOG0109|consen 149 SRLRTAPG 156 (346)
T ss_pred cccccCCC
Confidence 87554443
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.94 E-value=3.9e-08 Score=100.93 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=126.1
Q ss_pred CCCCceEEEcCCC-CCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLP-FSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....+.+.|-+|. -.++.+.|.++|-.||.|..|.|++.+ .|.|+|++.+...+++||. ||+..|.|..|.|.+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 4578899999996 568899999999999999999999875 6789999999999999998 999999999999988
Q ss_pred ccccCCCCC--C---CC--------CCCCCCccCC------CCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE
Q 045516 491 ARERGAYTP--Y---SG--------GNESNSFQKG------GRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR 551 (675)
Q Consensus 491 a~~~~~~~~--~---~~--------~~~~~~~~~~------~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~ 551 (675)
+........ . .+ +..++.|... ...+++++|+.-|.|..++++.+..++.+.-- ....
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v---~~~s 436 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV---PPTS 436 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC---Ccce
Confidence 865421110 0 00 1112222211 13457999999999999999985544443311 2455
Q ss_pred EEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC
Q 045516 552 ISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590 (675)
Q Consensus 552 v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G 590 (675)
|+|+..+ ....--++++|.+..+|..||. +|...|.+
T Consensus 437 vkvFp~k--serSssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 437 VKVFPLK--SERSSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EEeeccc--ccccccceeeeehHHHHHHHHHHhccccccC
Confidence 6666543 2234568999999999999998 88888865
No 116
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=5.9e-09 Score=84.46 Aligned_cols=73 Identities=36% Similarity=0.675 Sum_probs=65.0
Q ss_pred EEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 520 ~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
+|+|+|||..+++++ |.++|..||.|..+.+..+..+ .++|+|||.|.+.+.|..|+. +++..|+|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~----i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEED----LRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHH----HHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999988 6667777799999999987654 779999999999999999998 999999999999874
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.91 E-value=4.1e-09 Score=82.10 Aligned_cols=55 Identities=31% Similarity=0.587 Sum_probs=50.0
Q ss_pred HHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecc
Q 045516 539 LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEA 598 (675)
Q Consensus 539 L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a 598 (675)
|..+|++||.|..|.+.... +++|||+|.+.++|..|+. |||..|+|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998863 5999999999999999998 9999999999999985
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.89 E-value=4.9e-09 Score=107.67 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=130.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEE-EEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDV-RLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
..++..|..++|||..+..+|-.||.-.-...-. -|..+..|+..|.+.|.|.+.+.-..|++-+.+.+++|.|.|..+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKA 136 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeecc
Confidence 3456778899999999999999999865322222 223333688899999999999999999998889999999999766
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
....-..-.. +. .+...........-.|.+++||++++..++..+|...+---|.+..|.+++. ..|++.|-|||.|
T Consensus 137 ~ge~f~~iag-g~-s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlf 213 (508)
T KOG1365|consen 137 TGEEFLKIAG-GT-SNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLF 213 (508)
T ss_pred CchhheEecC-Cc-cccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEe
Confidence 5432111111 10 0000011111225678899999999999966555433333345556655554 3499999999999
Q ss_pred CCHHHHHHHHHhCCceeCCeeeEEecc
Q 045516 572 TDADSFNKALEMSGTEIGGYSLVVDEA 598 (675)
Q Consensus 572 ~~~e~A~~Al~lng~~~~Gr~l~V~~a 598 (675)
.+.+.|..||..|...|+-|+|.+...
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999998877654
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.4e-09 Score=108.95 Aligned_cols=82 Identities=23% Similarity=0.434 Sum_probs=76.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHH-HhCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al-~l~g~~~~gr~i~V~~a~ 492 (675)
..+.|||--|++-++.++|.-+|+.||.|..|.++++. +|-+..||||+|.+.+++++|+ .|++..|+.|+|+|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 35799999999999999999999999999999999998 9999999999999999999999 599999999999999997
Q ss_pred ccCC
Q 045516 493 ERGA 496 (675)
Q Consensus 493 ~~~~ 496 (675)
.-..
T Consensus 318 SVsk 321 (479)
T KOG0415|consen 318 SVSK 321 (479)
T ss_pred hhhh
Confidence 6443
No 120
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.87 E-value=4.2e-09 Score=102.26 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=77.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
..||||.||+..+..++++..|+.+|++||.|..|..... ...||.|||.|.+.+.|..|+. |+|..|.|..|+|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 4599999999999999999999999999999999988764 6789999999999999999998 99999999999999
Q ss_pred ccccCCCC
Q 045516 597 EAKQRGDF 604 (675)
Q Consensus 597 ~a~~r~~~ 604 (675)
|++.....
T Consensus 86 yA~s~sdi 93 (221)
T KOG4206|consen 86 YAKSDSDI 93 (221)
T ss_pred cccCccch
Confidence 99876544
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=5.2e-09 Score=106.79 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH--hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE--LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~--l~g~~~~gr~i~V~~ 490 (675)
....++|||+||...+++.+|+++|.+||+|..|++... +++|||+|.+...|+.|.+ +|...|.|++|.|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456789999999999999999999999999999999865 7899999999999999996 898899999999999
Q ss_pred ccc
Q 045516 491 ARE 493 (675)
Q Consensus 491 a~~ 493 (675)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.85 E-value=5.3e-09 Score=116.12 Aligned_cols=80 Identities=28% Similarity=0.537 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
--++|||||+|+.++++.+|..+|+.||.|.+|.|+.. +|||||.+.+..+|.+||. |++..|.++.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 35799999999999999999999999999999999854 8999999999999999997 99999999999999998
Q ss_pred ccCCCC
Q 045516 493 ERGAYT 498 (675)
Q Consensus 493 ~~~~~~ 498 (675)
..+...
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 876544
No 123
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.4e-08 Score=101.87 Aligned_cols=79 Identities=32% Similarity=0.550 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~ 494 (675)
..+|+|.|||+.+++.+|++||..||.+..+-|.+++.|++.|.|-|.|...++|..||+ |||..|+|+.|.|.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 468999999999999999999999999999999999999999999999999999999998 9999999999999887644
No 124
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.73 E-value=3.9e-08 Score=98.90 Aligned_cols=81 Identities=33% Similarity=0.589 Sum_probs=76.7
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
....+||+|+.+.++.+. ++.+|..||.|..|.|+.++.+|.++||+||+|.+.+.+..+|.||+..|.|+.|.|.
T Consensus 100 d~~sv~v~nvd~~~t~~~----~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTK----IELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred CCceEEEeccccccccch----hhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 478999999999999887 8899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 045516 597 EAKQR 601 (675)
Q Consensus 597 ~a~~r 601 (675)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88766
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.1e-08 Score=102.10 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=77.8
Q ss_pred CCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 514 ~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
..++.+.|||--|++-++.++ |.-+|+.||.|..|.|++|+.||.+-.||||+|.+.++|.+|+= |++..|+.++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeD----LeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDED----LEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccc----hhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 456789999999999999888 88999999999999999999999999999999999999999975 9999999999
Q ss_pred eEEecccc
Q 045516 593 LVVDEAKQ 600 (675)
Q Consensus 593 l~V~~a~~ 600 (675)
|+|+|...
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99999864
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.68 E-value=3.6e-08 Score=94.27 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=71.9
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhccc-CcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSC-GEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~-G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
....++|..+|..+.+.+| ..+|.+| |.|.++++.++..||.++|||||+|.+.+.|.-|.+ ||+..|.|+.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~----~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEI----LNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccceeecccccchhHHHH----hhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 3678999999999998884 4455555 899999999999999999999999999999999999 999999999999
Q ss_pred EeccccC
Q 045516 595 VDEAKQR 601 (675)
Q Consensus 595 V~~a~~r 601 (675)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9988765
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=1.6e-08 Score=99.17 Aligned_cols=168 Identities=20% Similarity=0.327 Sum_probs=129.7
Q ss_pred CCceEEEcCCCCCCCHHH-H--HHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQAD-V--QNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~-L--~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....+|++|+-..+..+- | ...|.-|-.++...++++..+.-++++|+.|.......++-. -+++.+.-++|++.-
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 346778888876666555 3 678888877888888888888889999999998877777775 677777777755533
Q ss_pred ccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEE
Q 045516 491 ARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLD 570 (675)
Q Consensus 491 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~ 570 (675)
.+.-.. +. +. .-.....+||.+.|.-.++.+. |...|.+|-.....+++++..||+++||+||.
T Consensus 175 gtswed--Ps--------l~--ew~~~DfRIfcgdlgNevnd~v----l~raf~Kfpsf~~akviRdkRTgKSkgygfVS 238 (290)
T KOG0226|consen 175 GTSWED--PS--------LA--EWDEDDFRIFCGDLGNEVNDDV----LARAFKKFPSFQKAKVIRDKRTGKSKGYGFVS 238 (290)
T ss_pred ccccCC--cc--------cc--cCccccceeecccccccccHHH----HHHHHHhccchhhccccccccccccccceeee
Confidence 322110 00 00 0112267899998888888876 78888888999999999999999999999999
Q ss_pred eCCHHHHHHHHH-hCCceeCCeeeEEecc
Q 045516 571 FTDADSFNKALE-MSGTEIGGYSLVVDEA 598 (675)
Q Consensus 571 F~~~e~A~~Al~-lng~~~~Gr~l~V~~a 598 (675)
|.++.++.+||. |+|.+++.|.|.++-.
T Consensus 239 f~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 239 FRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 999999999998 9999999999987643
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=4e-08 Score=105.34 Aligned_cols=81 Identities=28% Similarity=0.457 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
..-.+.|||.+|...+...+|+.||++||.|+-..++.+. +---+.|+||+|.+.+.|.+||+ |+.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4557899999999999999999999999999999999885 44458999999999999999998 999999999999988
Q ss_pred ccc
Q 045516 491 ARE 493 (675)
Q Consensus 491 a~~ 493 (675)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 764
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.67 E-value=1.3e-08 Score=105.00 Aligned_cols=166 Identities=18% Similarity=0.184 Sum_probs=119.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCC----CCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD----GRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~----g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
.+.|.|.||.++++.++|+.||..+|.|..++|+.+.. ......|||-|.+...+..|..|.++.|-++.|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 35899999999999999999999999999999987642 33567999999999999999999999998888888655
Q ss_pred cccCCCC-------------CC---CCCCCC--CCccCCC--------------------CCCCceEEEEecCCCCcCHH
Q 045516 492 RERGAYT-------------PY---SGGNES--NSFQKGG--------------------RGQAAHTIFIKGFDSSVGED 533 (675)
Q Consensus 492 ~~~~~~~-------------~~---~~~~~~--~~~~~~~--------------------~~~~~~~lfV~nLp~~~te~ 533 (675)
....... +. ..+... ..+...+ .....++|+|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 4321000 00 000000 0000000 00123567777777666655
Q ss_pred HHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeC
Q 045516 534 QVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIG 589 (675)
Q Consensus 534 ~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~ 589 (675)
+ |-.+|..||.|.+.++.-. ...-+|.|.|........|+.++|+.|.
T Consensus 167 e----~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 167 E----SGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred h----hhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 5 7788999999998877653 3366788999999999999999888775
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=5.3e-09 Score=108.58 Aligned_cols=154 Identities=17% Similarity=0.311 Sum_probs=119.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCc-ccCCeeEEEEecccc
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQ-MLGNRAIRLDFARER 494 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~-~~~gr~i~V~~a~~~ 494 (675)
..|||+||...++-.+|..+|...-.-..-.|+. -.||+||.+.+..-|.+|++ |+|. .+.|.++.|....++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4799999999999999999998652111111221 16999999999999999998 8776 689999999887665
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEeccc-CCCCCeeeEEEEEeCC
Q 045516 495 GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKD-YDTGSVKGIAYLDFTD 573 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d-~~tG~~rG~afV~F~~ 573 (675)
... ++.+-|+|+|..+.|+. |..+...||.|..|..... .+ .-..-|+|..
T Consensus 77 kqr--------------------srk~Qirnippql~wev----ld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~ 128 (584)
T KOG2193|consen 77 KQR--------------------SRKIQIRNIPPQLQWEV----LDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSA 128 (584)
T ss_pred HHH--------------------hhhhhHhcCCHHHHHHH----HHHHHhccCCHhHhhhhccchH----HHHHHHHHHH
Confidence 321 56789999999998887 7778888899999876432 22 2234467889
Q ss_pred HHHHHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 574 ADSFNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 574 ~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
.+.+..||. |+|..|....+.|.|-.....
T Consensus 129 ~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 129 QQQHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 999999998 999999999999988754433
No 131
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.60 E-value=1e-07 Score=95.91 Aligned_cols=82 Identities=27% Similarity=0.447 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
.-+.+.|||+||.+.+|.++|..+|+.||.|..|.|..+. .++++||+||+|.+.+.+..+|.||+..|.|+.|.|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4466899999999999999999999999999999999998 678999999999999999999999999999999999888
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
+.+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 132
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.58 E-value=1.6e-07 Score=96.88 Aligned_cols=84 Identities=31% Similarity=0.510 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEE--------EEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCce
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEIT--------RISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~--------~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~ 587 (675)
...+|||.+|+..++..+ |..+|.+||.|. .|.|.++.+|+.++|-|.|.|.+...|+.||. +++..
T Consensus 65 ~~~ti~v~g~~d~~~~~~----~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCEND----NADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccceeeccCccchHHH----HHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 467999999999999987 778888889874 47888999999999999999999999999998 99999
Q ss_pred eCCeeeEEeccccCCCC
Q 045516 588 IGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 588 ~~Gr~l~V~~a~~r~~~ 604 (675)
|.|..|.|.++..+...
T Consensus 141 f~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTGV 157 (351)
T ss_pred ccCCCchhhhhhhccCc
Confidence 99999999999887753
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=96.42 Aligned_cols=75 Identities=29% Similarity=0.526 Sum_probs=68.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH--hCCceeCCeee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE--MSGTEIGGYSL 593 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~--lng~~~~Gr~l 593 (675)
....+|||+||...+++.+ |++||.+||.|+.|++... +++|||+|.+...|..|.. +|...|+|++|
T Consensus 226 ~~I~tLyIg~l~d~v~e~d----IrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQD----IRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred cceeEEEecccccchhHHH----HHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3478999999999999888 6789999999999999886 6799999999999999986 89889999999
Q ss_pred EEecccc
Q 045516 594 VVDEAKQ 600 (675)
Q Consensus 594 ~V~~a~~ 600 (675)
.|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999988
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=4.4e-07 Score=91.09 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=72.1
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
...|+|.||++.+...+ |+++|..||.+..+.|.+++ .|++.|.|-|.|...++|.+|+. |||..|+|+.|.+.
T Consensus 83 ~~~v~v~NL~~~V~~~D----l~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDAD----LKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cceeeeecCCcCcchHH----HHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 57899999999999998 77888888999999999884 59999999999999999999998 99999999999888
Q ss_pred ccccCCC
Q 045516 597 EAKQRGD 603 (675)
Q Consensus 597 ~a~~r~~ 603 (675)
...+...
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 7654433
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=3.8e-08 Score=106.46 Aligned_cols=172 Identities=23% Similarity=0.243 Sum_probs=109.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
.-.+++|+|-|||..++.++|+++|+.||+|..|++.+. .+|++||+|.+..+|++||. ||+..|.|++|.....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 346799999999999999999999999999999888765 38999999999999999997 9999999999882211
Q ss_pred cccCCCCCCCCCCCCCCccC-----CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeE
Q 045516 492 RERGAYTPYSGGNESNSFQK-----GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGI 566 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~ 566 (675)
..+.... ..+...-..+.. ...+-+...+|+- |.+.... .++..+|..+|.+.. +.. +...-.
T Consensus 148 ~~~~~~~-~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~----~~~~~~~~~~~~~~~-~~~-----~~~~hq 215 (549)
T KOG4660|consen 148 ARRAMGL-QSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSS----ILLEHISSVDGSSPG-RET-----PLLNHQ 215 (549)
T ss_pred ccccchh-cccchhhhhccchhhcCCCCCCcCCcceee-eccchhh----hhhhcchhccCcccc-ccc-----cchhhh
Confidence 1111000 000000000000 0000112233333 6665555 236667777777655 322 222336
Q ss_pred EEEEeCCHHHHHHHHHhCCceeCCeeeEEecccc
Q 045516 567 AYLDFTDADSFNKALEMSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 567 afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~a~~ 600 (675)
-|+.|.+..++..++.-.|..+.+....+.+..+
T Consensus 216 ~~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhccccchhhcccCCceecCCCCceEEecCC
Confidence 7788888877755544226666666666666655
No 136
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.48 E-value=6.4e-07 Score=92.59 Aligned_cols=83 Identities=27% Similarity=0.427 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeE--------EEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVV--------DVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
....-+|||-+||.++++.+|..||.+||.|. .|+|.+++ |+..+|-|.|.|.+...|+.||. +++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567999999999999999999999999884 47788887 89999999999999999999998 9999999
Q ss_pred CeeEEEEeccccC
Q 045516 483 NRAIRLDFARERG 495 (675)
Q Consensus 483 gr~i~V~~a~~~~ 495 (675)
|..|.|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987765
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.42 E-value=5.3e-07 Score=99.17 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=128.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
..+.+.|-+.++++++...+++.||.-. .|..+.|..+. .+...|.+||.|.....+++|+.-|...+-.|.|.|...
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 4567888889999999999999999754 46666666666 444589999999999999999999999999999998766
Q ss_pred cccCCCC--------C-CC----CCCCC-CC--ccCC-----CCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEE
Q 045516 492 RERGAYT--------P-YS----GGNES-NS--FQKG-----GRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEIT 550 (675)
Q Consensus 492 ~~~~~~~--------~-~~----~~~~~-~~--~~~~-----~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~ 550 (675)
....... . .. .++.. .. .... ........|||..||..++...+. .+|...-.|+
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v----~~f~~~~~Ve 462 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPV----NKFMGAAAVE 462 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchh----hhhhhhhhhh
Confidence 5432110 0 00 00000 00 0000 112347899999999999998844 4444445566
Q ss_pred E-EEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 551 R-ISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 551 ~-v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
+ |.|.+. -+++.++.|||.|...+.+..|+. .+-++++.|.|+|.-
T Consensus 463 d~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 463 DFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred heeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 6 444443 468889999999999998888887 788888889998863
No 138
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.39 E-value=4.6e-07 Score=101.11 Aligned_cols=76 Identities=24% Similarity=0.443 Sum_probs=70.1
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.++||||++|+.++++.+ |..+|+.||.|..|.|+.. ||+|||.+....+|.+||. |++..|.++.|+|
T Consensus 420 ~SrTLwvG~i~k~v~e~d----L~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQD----LANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred eeeeeeeccccchhhHHH----HHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 589999999999999998 7788888999999999776 8999999999999999998 9999999999999
Q ss_pred eccccCC
Q 045516 596 DEAKQRG 602 (675)
Q Consensus 596 ~~a~~r~ 602 (675)
.|+...+
T Consensus 490 ~Wa~g~G 496 (894)
T KOG0132|consen 490 AWAVGKG 496 (894)
T ss_pred eeeccCC
Confidence 9997543
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.38 E-value=3.8e-07 Score=100.68 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCC----CCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD----GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~----g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
.++.|||+||++.++++.|...|..||+|..|+|+.-++ .+.+.|+||.|-+..++++||. |+|+.+.++.|++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 467899999999999999999999999999999987662 5578899999999999999997 99999999999999
Q ss_pred eccc
Q 045516 490 FARE 493 (675)
Q Consensus 490 ~a~~ 493 (675)
|...
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 8854
No 140
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.38 E-value=1e-06 Score=87.21 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=52.9
Q ss_pred HHHHHHhh-hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 431 ADVQNFFS-EVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 431 ~~L~~~F~-~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
++|...|. +||+|..+.|..+..-+..|-+||.|...++|++|++ ||+.+|.|++|+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444445 8999999988877666779999999999999999998 99999999999998863
No 141
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.34 E-value=5.5e-06 Score=91.40 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD-VRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
...+..|||..||+.+++..+..+|...-.|++ |.|.+.++++.++-|||.|.+++.+..|+. .+-++++.|.|+|+.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 356789999999999999999999998777777 888888899999999999999998888887 677788888899875
Q ss_pred cc
Q 045516 491 AR 492 (675)
Q Consensus 491 a~ 492 (675)
..
T Consensus 511 i~ 512 (944)
T KOG4307|consen 511 IA 512 (944)
T ss_pred hh
Confidence 53
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=4.2e-06 Score=72.32 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=67.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhh--CCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccC----CeeEEE
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSE--VAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLG----NRAIRL 488 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~--~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~----gr~i~V 488 (675)
+||.|+|||...|.+.|.+++.. .|...-+.|+.|. ++.+.|||||-|.++..|..... ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999998875 4778889999997 88899999999999999999997 9998885 455667
Q ss_pred Eecccc
Q 045516 489 DFARER 494 (675)
Q Consensus 489 ~~a~~~ 494 (675)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 766543
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=1.1e-06 Score=94.40 Aligned_cols=82 Identities=17% Similarity=0.379 Sum_probs=74.2
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...+.|||.+|...+...+ |+.||++||.|+-..|+++..+--.+.|+||++.+.+.|.+||+ ||...|.|+.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtD----LKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATD----LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ccccceeeeccccchhhhH----HHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 3478999999998887777 88999999999999999987777789999999999999999998 999999999999
Q ss_pred EeccccC
Q 045516 595 VDEAKQR 601 (675)
Q Consensus 595 V~~a~~r 601 (675)
|..++.-
T Consensus 479 VEkaKNE 485 (940)
T KOG4661|consen 479 VEKAKNE 485 (940)
T ss_pred eeecccC
Confidence 9988643
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.20 E-value=1.3e-06 Score=86.00 Aligned_cols=80 Identities=26% Similarity=0.467 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....+||.+.|...++.+.|-..|.+|-.....+++++. +|+++||+||-|.+..++..||. |||.+++.|+|.+.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 456899999999999999999999999988889999997 99999999999999999999996 9999999999998665
Q ss_pred cc
Q 045516 492 RE 493 (675)
Q Consensus 492 ~~ 493 (675)
..
T Consensus 268 ~w 269 (290)
T KOG0226|consen 268 EW 269 (290)
T ss_pred hH
Confidence 43
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.19 E-value=1e-05 Score=69.89 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=72.0
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC----Ceee
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG----GYSL 593 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~----Gr~l 593 (675)
+||.|+|||-..+...|.+.|...|. |..-.+.|+.|..++...|||||.|.++..+..-.. ++|..+. .+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~--g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK--GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc--CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 68999999999999999999998874 889999999999999999999999999999999988 9998885 4567
Q ss_pred EEeccccC
Q 045516 594 VVDEAKQR 601 (675)
Q Consensus 594 ~V~~a~~r 601 (675)
.|.||+-.
T Consensus 80 ~i~yAriQ 87 (97)
T PF04059_consen 80 EISYARIQ 87 (97)
T ss_pred EEehhHhh
Confidence 77877643
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=9.4e-06 Score=66.93 Aligned_cols=74 Identities=18% Similarity=0.402 Sum_probs=55.2
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccC-cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCG-EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G-~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
...|+|.|||.+.....|+.-|++++..|| .|..|. .+.|+|.|.+.+.|.+|+. |+|..+.|+.|.|
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 367999999999999999999999999997 455551 3679999999999999998 9999999999999
Q ss_pred eccccC
Q 045516 596 DEAKQR 601 (675)
Q Consensus 596 ~~a~~r 601 (675)
.|....
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 998543
No 147
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.13 E-value=4.7e-06 Score=85.48 Aligned_cols=78 Identities=26% Similarity=0.488 Sum_probs=70.1
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE--------EEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCcee
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR--------ISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI 588 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~--------v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~ 588 (675)
...|||.|||.++|.++ |.++|.+||.|.. |.|.++.. |..+|-|+|.|--.+++..||. |++..|
T Consensus 134 Nt~VYVsgLP~DiT~dE----~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDE----FAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred CceEEecCCCCcccHHH----HHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 46699999999999998 8899999998854 67777755 9999999999999999999999 999999
Q ss_pred CCeeeEEecccc
Q 045516 589 GGYSLVVDEAKQ 600 (675)
Q Consensus 589 ~Gr~l~V~~a~~ 600 (675)
.|+.|+|..|+-
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999998853
No 148
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.12 E-value=1.7e-05 Score=81.05 Aligned_cols=82 Identities=21% Similarity=0.365 Sum_probs=69.2
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCC
Q 045516 408 PFTPQSGGSKTLFVGNLPFSVEQADVQNFFSEVA--EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN 483 (675)
Q Consensus 408 ~~~~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g 483 (675)
+.+...+-..++||+||-|++|..+|.+.+...| .|.+++|+.++ +|+++|||+|.+.+...+.+.|+ |-...|.|
T Consensus 72 ~~~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 72 PATSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred ccccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 3344456667899999999999999999988877 47888888888 89999999999999999999998 78888888
Q ss_pred eeEEEE
Q 045516 484 RAIRLD 489 (675)
Q Consensus 484 r~i~V~ 489 (675)
+.-.|.
T Consensus 152 Q~P~V~ 157 (498)
T KOG4849|consen 152 QSPTVL 157 (498)
T ss_pred CCCeee
Confidence 765553
No 149
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.02 E-value=2.4e-05 Score=75.72 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=64.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEeccc-CCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC---Cee
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKD-YDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG---GYS 592 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d-~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~---Gr~ 592 (675)
.+||||.+||.++...+ |+.+|..|-.-+.+.|... ....-++-+|||.|.+...|..|+. |||..|+ +..
T Consensus 34 VRTLFVSGLP~DvKpRE----iynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPRE----IYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cceeeeccCCcccCHHH----HHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 69999999999999998 5566666655555555433 2223456899999999999999998 9999996 789
Q ss_pred eEEeccccCCCC
Q 045516 593 LVVDEAKQRGDF 604 (675)
Q Consensus 593 l~V~~a~~r~~~ 604 (675)
|+|++++....+
T Consensus 110 LhiElAKSNtK~ 121 (284)
T KOG1457|consen 110 LHIELAKSNTKR 121 (284)
T ss_pred eEeeehhcCccc
Confidence 999999764443
No 150
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=7.3e-06 Score=80.68 Aligned_cols=72 Identities=24% Similarity=0.503 Sum_probs=63.6
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
..|||++|++.+.+.+ |+.||..||.|..|.|.. ||+||+|.+.-+|.-|+. ||+..|+|-.|.|.|
T Consensus 2 ~rv~vg~~~~~~~~~d----~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERD----VERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred CceeecccCCccchhH----HHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 4689999999999998 778888899999987754 688999999999999998 999999998899998
Q ss_pred cccCC
Q 045516 598 AKQRG 602 (675)
Q Consensus 598 a~~r~ 602 (675)
++...
T Consensus 70 ~r~~~ 74 (216)
T KOG0106|consen 70 ARGKR 74 (216)
T ss_pred ccccc
Confidence 87543
No 151
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.97 E-value=2.1e-05 Score=78.04 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=46.8
Q ss_pred ccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecc
Q 045516 545 SCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEA 598 (675)
Q Consensus 545 ~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a 598 (675)
+||+|..+.|..+. .-..+|-+||.|...++|.+|++ ||+.+|+|++|++.+.
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 89999999776653 24568999999999999999998 9999999999999876
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=3e-05 Score=64.03 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=48.0
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 417 KTLFVGNLPFSVEQAD----VQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~----L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
..|||.|||.+..-.. |++|+..|| .|..|. .+.|+|.|.+.+.|.+|+. |+|..+.|+.|.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4699999999988766 456777786 576662 5899999999999999998 999999999999998
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.92 E-value=8.6e-06 Score=84.79 Aligned_cols=82 Identities=33% Similarity=0.590 Sum_probs=73.6
Q ss_pred CCCceEE-EcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 414 GGSKTLF-VGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlf-V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....+|| |+||+++++.++|+.+|..+|.|+.|+++.+. ++..+||+||.|........+|..+...+.+++|.|.+.
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccC
Confidence 3456666 99999999999999999999999999999987 899999999999999999999877788899999999887
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 6653
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=7.8e-06 Score=88.89 Aligned_cols=69 Identities=29% Similarity=0.505 Sum_probs=63.3
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
+.++|+|.|||..++.++ |.++|+.||+|+.|+..+. .+|++||+|.+.-.|.+|+. |++..|.|++|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~----L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDT----LLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHH----HHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 478999999999999998 8899999999999877665 48999999999999999998 999999999988
No 155
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.87 E-value=3.1e-05 Score=79.30 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=3.9
Q ss_pred EcCCCCCCCH
Q 045516 421 VGNLPFSVEQ 430 (675)
Q Consensus 421 V~nLp~~~te 430 (675)
+.-.|-++++
T Consensus 154 ~~k~p~Nin~ 163 (465)
T KOG3973|consen 154 FPKQPGNINE 163 (465)
T ss_pred CCCCCCCchH
Confidence 3333344443
No 156
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.77 E-value=3.4e-05 Score=85.65 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=71.0
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccC---CCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDY---DTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~---~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
..+.|||+||+..+++.. |-..|+.||.|..|.|+..+ +..+.+.++||.|.+..++.+|+. |+|..+.++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~----ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENF----LLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred cccceeeecCCccccHHH----HHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 368899999999999987 77899999999999988754 346678899999999999999998 9999999999
Q ss_pred eEEeccc
Q 045516 593 LVVDEAK 599 (675)
Q Consensus 593 l~V~~a~ 599 (675)
|++-|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999984
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=2.1e-06 Score=97.15 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=127.0
Q ss_pred CCCceEEEcCCCCCCCHH-HHHHHhhhCCCeEEEEEeeCCCCCc-ccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQA-DVQNFFSEVAEVVDVRLSSDADGRF-KGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~-~L~~~F~~~G~I~~v~i~~~~~g~~-kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
...+.+++.|+-+..... .++..|..+|.|..|++.......+ ..+.|+.|.....++.|....+..+.++.+.|.++
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCC
Confidence 456778899997777666 5788999999999999987443332 33899999999999999999999999999998887
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
..+....... ..........++||+||+..+...+ |...|..||.|..|+|.....+++.||+|||.|
T Consensus 649 d~~~~~~~~k--------vs~n~~R~~~~~fvsnl~~~~~~~d----l~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F 716 (881)
T KOG0128|consen 649 DAEEKEENFK--------VSPNEIRDLIKIFVSNLSPKMSEED----LSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEF 716 (881)
T ss_pred CchhhhhccC--------cCchHHHHHHHHHHhhcchhhcCch----hhhhcCccchhhhHHHHHHhhccccccceeeEe
Confidence 6543111100 0001112257899999999999988 778888889888888886677899999999999
Q ss_pred CCHHHHHHHHHhCCceeCC
Q 045516 572 TDADSFNKALEMSGTEIGG 590 (675)
Q Consensus 572 ~~~e~A~~Al~lng~~~~G 590 (675)
...+.+.+||.++...|.|
T Consensus 717 ~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 717 LKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred ecCCchhhhhhhhhhhhhh
Confidence 9999999999855444444
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.71 E-value=0.00011 Score=77.43 Aligned_cols=78 Identities=27% Similarity=0.388 Sum_probs=60.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeC---C-C--CC--------cccEEEEEecCHHHHHHHHH-hCC
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD---A-D--GR--------FKGYGHVEFASVEDAHKAIE-LNG 478 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~---~-~--g~--------~kG~afV~F~~~e~A~~Al~-l~g 478 (675)
-.+++|.+-|||.+-.-+.|..||..||.|..|+|+.- + + +. .+-+|||+|...+.|.+|.+ ||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999999999999999999999999999865 2 1 22 25689999999999999999 444
Q ss_pred cccCCeeEEEEec
Q 045516 479 QMLGNRAIRLDFA 491 (675)
Q Consensus 479 ~~~~gr~i~V~~a 491 (675)
....-..|+|.+.
T Consensus 309 e~~wr~glkvkLl 321 (484)
T KOG1855|consen 309 EQNWRMGLKVKLL 321 (484)
T ss_pred hhhhhhcchhhhh
Confidence 3333333444443
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.70 E-value=3.8e-05 Score=78.27 Aligned_cols=79 Identities=14% Similarity=0.392 Sum_probs=62.8
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHhhhCCCeEEEEEeeCC--CCCcccE--EEEEecCHHHHHHHHH-hCCcccCCe
Q 045516 416 SKTLFVGNLPFSVEQAD----V--QNFFSEVAEVVDVRLSSDA--DGRFKGY--GHVEFASVEDAHKAIE-LNGQMLGNR 484 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~----L--~~~F~~~G~I~~v~i~~~~--~g~~kG~--afV~F~~~e~A~~Al~-l~g~~~~gr 484 (675)
-+-|||-+||..+-.++ | .+||.+||.|..|.|-+.. ...-.+. .||.|.+.++|.+||. .+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45789999998887776 2 5699999999998876543 1222232 3999999999999997 999999999
Q ss_pred eEEEEecccc
Q 045516 485 AIRLDFARER 494 (675)
Q Consensus 485 ~i~V~~a~~~ 494 (675)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999887543
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.63 E-value=0.00014 Score=64.20 Aligned_cols=68 Identities=28% Similarity=0.363 Sum_probs=42.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h--C---CcccCCeeEEEE
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-L--N---GQMLGNRAIRLD 489 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l--~---g~~~~gr~i~V~ 489 (675)
+.|+|.||+..++.++|+++|..||.|..|.+... ...|||.|.+.+.|+.|+. + . +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57999999999999999999999999999988753 4589999999999999996 3 3 334455554443
No 161
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.62 E-value=2.3e-05 Score=75.69 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=67.3
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.+||||.||-..++++- |.++|-+.|.|..|.|+.+.+ +..+ ||||.|.+.....-|++ |||..|.++.|.|.
T Consensus 9 drtl~v~n~~~~v~eel----L~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEEL----LSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred hhHHHHHhhhhhhhHHH----HHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 68999999999999886 778888889999999998865 5555 99999999999999999 99999999988887
Q ss_pred ccc
Q 045516 597 EAK 599 (675)
Q Consensus 597 ~a~ 599 (675)
+..
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 653
No 162
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.58 E-value=0.00029 Score=81.86 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=45.1
Q ss_pred eEEEEe-cCCCCcCHHHHHHHHHhhhcc-cCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 519 HTIFIK-GFDSSVGEDQVRASLEEHFGS-CGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 519 ~~lfV~-nLp~~~te~~i~~~L~~~F~~-~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.++||. +--..+....|...|...-.- -..|-.|.|+.+ |.||+.... .+...+. |++..+.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCceEE
Confidence 345443 334567777765555544211 013455555543 678877544 3566666 9999999999999
Q ss_pred eccccC
Q 045516 596 DEAKQR 601 (675)
Q Consensus 596 ~~a~~r 601 (675)
..+...
T Consensus 558 ~~~~~~ 563 (629)
T PRK11634 558 QLLGDA 563 (629)
T ss_pred EECCCC
Confidence 987533
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.57 E-value=0.00018 Score=75.99 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=52.6
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEeccc---CCC--CCe--------eeEEEEEeCCHHHHHHHHH
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKD---YDT--GSV--------KGIAYLDFTDADSFNKALE 582 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d---~~t--G~~--------rG~afV~F~~~e~A~~Al~ 582 (675)
.++++|.+-|||.+-..+ .|..||+.||.|..|+|+.. ... +.+ +-+|||+|...+.|.+|.+
T Consensus 229 l~srtivaenLP~Dh~~e----nl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYE----NLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHH----HHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 358999999999877664 48999999999999999876 322 222 4579999999999999998
Q ss_pred hC
Q 045516 583 MS 584 (675)
Q Consensus 583 ln 584 (675)
|.
T Consensus 305 ~~ 306 (484)
T KOG1855|consen 305 LL 306 (484)
T ss_pred hh
Confidence 43
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.48 E-value=0.0002 Score=73.51 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=64.2
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
..++||+||-+.+++.+|...|+.+ ....|..+.++.++.+|.++|||+|...+.....+.|+ |-...|.|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~--G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST--GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh--hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4689999999999999988877765 11256777888888899999999999999999999998 88888988765553
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.31 E-value=0.00037 Score=71.28 Aligned_cols=83 Identities=19% Similarity=0.429 Sum_probs=66.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHH--hhhcccCcEEEEEecccCCC---CCeeeEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLE--EHFGSCGEITRISVPKDYDT---GSVKGIAYLDFTDADSFNKALE-MSGTEIGGY 591 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~--~~F~~~G~I~~v~i~~d~~t---G~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr 591 (675)
-+.+||-+|+..+..+++...|. +||++||.|..|.|-+.-.. -...--.||.|.+.++|.+||. .+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46789999999998887666665 69999999999988764311 1111235999999999999998 999999999
Q ss_pred eeEEecccc
Q 045516 592 SLVVDEAKQ 600 (675)
Q Consensus 592 ~l~V~~a~~ 600 (675)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998753
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.30 E-value=0.00028 Score=70.05 Aligned_cols=71 Identities=25% Similarity=0.394 Sum_probs=60.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-C--------CCcccE----EEEEecCHHHHHHHHH-hCCcc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-D--------GRFKGY----GHVEFASVEDAHKAIE-LNGQM 480 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~--------g~~kG~----afV~F~~~e~A~~Al~-l~g~~ 480 (675)
.+..|||+|||+.+.-..|++||..||.|-+|.|.... . |.++++ |+|+|.+...|..+.. |||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45799999999999999999999999999999997654 2 233332 6799999999999887 99999
Q ss_pred cCCee
Q 045516 481 LGNRA 485 (675)
Q Consensus 481 ~~gr~ 485 (675)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.28 E-value=0.0013 Score=60.78 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=58.2
Q ss_pred CCCCceEEEEecCC-----CCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCcee
Q 045516 514 RGQAAHTIFIKGFD-----SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEI 588 (675)
Q Consensus 514 ~~~~~~~lfV~nLp-----~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~ 588 (675)
.+++..||.|.-+. ...-.+.+...|-+.|..||.|.-||+..+ .-+|+|.+-..|.+|+.|+|..+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEE
Confidence 34556777777665 233456677778888999999999988765 47999999999999999999999
Q ss_pred CCeeeEEecccc
Q 045516 589 GGYSLVVDEAKQ 600 (675)
Q Consensus 589 ~Gr~l~V~~a~~ 600 (675)
+|+.|+|..-.+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999987654
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.27 E-value=0.0008 Score=58.65 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=54.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEE-EeeC-------CCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeE
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVR-LSSD-------ADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~-i~~~-------~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i 486 (675)
..+.|.|=+.|.. ....|.++|++||.|++.. +.++ +.-...++..|.|.++.+|.+||..||..|.|..|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3467889999988 6778999999999998885 1111 11124679999999999999999999999988655
Q ss_pred -EEEec
Q 045516 487 -RLDFA 491 (675)
Q Consensus 487 -~V~~a 491 (675)
-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45555
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00072 Score=73.70 Aligned_cols=79 Identities=30% Similarity=0.478 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCCCC--CHH----HHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC-Cee
Q 045516 414 GGSKTLFVGNLPFSV--EQA----DVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG-NRA 485 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~--te~----~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~-gr~ 485 (675)
+-...|+|-|+|--- ..+ -|..+|++||.|+.+.++.+..|..+||.|++|.+..+|..|+. |||+.|+ ++.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 556799999998432 222 35679999999999999999877799999999999999999998 9999884 566
Q ss_pred EEEEecc
Q 045516 486 IRLDFAR 492 (675)
Q Consensus 486 i~V~~a~ 492 (675)
+.|..-.
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776544
No 170
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.19 E-value=0.0012 Score=58.37 Aligned_cols=69 Identities=19% Similarity=0.431 Sum_probs=41.5
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-h--C---CceeCCee
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-M--S---GTEIGGYS 592 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-l--n---g~~~~Gr~ 592 (675)
..|+|.|++..++.++ |+.+|..||.|.+|.+.+. ...|||.|.+.+.|..|+. + . +..|.+..
T Consensus 2 ~il~~~g~~~~~~re~----iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~ 71 (105)
T PF08777_consen 2 CILKFSGLGEPTSRED----IKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKE 71 (105)
T ss_dssp -EEEEEE--SS--HHH----HHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSS
T ss_pred eEEEEecCCCCcCHHH----HHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCce
Confidence 5789999999988666 8888999999999999876 3479999999999999986 3 3 44566666
Q ss_pred eEEec
Q 045516 593 LVVDE 597 (675)
Q Consensus 593 l~V~~ 597 (675)
+.+..
T Consensus 72 ~~~~v 76 (105)
T PF08777_consen 72 VTLEV 76 (105)
T ss_dssp EEEE-
T ss_pred EEEEE
Confidence 55543
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.18 E-value=0.00076 Score=51.77 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI 474 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al 474 (675)
+.|-|.+.+.... +.|+.+|.+||+|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 6788999987766 45566999999999998872 3679999999999999986
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0012 Score=57.44 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=51.4
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEec-ccC------CCCCeeeEEEEEeCCHHHHHHHHHhCCceeCC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVP-KDY------DTGSVKGIAYLDFTDADSFNKALEMSGTEIGG 590 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~-~d~------~tG~~rG~afV~F~~~e~A~~Al~lng~~~~G 590 (675)
.+.|.|-|+|...... +-++|.+||.|....-. ++. ..-....+..|+|.++.+|.+||..||..|+|
T Consensus 6 ~~wVtVFGfp~~~~~~-----Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPSASNQ-----VLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GGGHHH-----HHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred CeEEEEEccCHHHHHH-----HHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 4678888998876554 66789999999887511 110 00123579999999999999999999999998
Q ss_pred eee-EEecc
Q 045516 591 YSL-VVDEA 598 (675)
Q Consensus 591 r~l-~V~~a 598 (675)
..| -|.+.
T Consensus 81 ~~mvGV~~~ 89 (100)
T PF05172_consen 81 SLMVGVKPC 89 (100)
T ss_dssp CEEEEEEE-
T ss_pred cEEEEEEEc
Confidence 654 45554
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.05 E-value=0.00047 Score=75.53 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhh-hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCccc---CCeeE
Q 045516 412 QSGGSKTLFVGNLPFSVEQADVQNFFS-EVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQML---GNRAI 486 (675)
Q Consensus 412 ~~~~~~tlfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~---~gr~i 486 (675)
....++.|||.||-.-+|.-+|+.|+. .+|.|...||-+ -+-.|||.|.+.+.|...+. |||..| +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 456789999999999999999999999 677888886643 37789999999999999997 999887 57888
Q ss_pred EEEeccc
Q 045516 487 RLDFARE 493 (675)
Q Consensus 487 ~V~~a~~ 493 (675)
.|.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8888764
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0021 Score=70.22 Aligned_cols=79 Identities=18% Similarity=0.406 Sum_probs=66.8
Q ss_pred ceEEEEecCCCC--cCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC-Ceee
Q 045516 518 AHTIFIKGFDSS--VGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG-GYSL 593 (675)
Q Consensus 518 ~~~lfV~nLp~~--~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~-Gr~l 593 (675)
...|+|.|+|-- ..-.-|+..|..+|+++|.|..+.++.+..+| .+||.|++|.+..+|..|+. |||+.|+ .+.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 578889998853 33567888899999999999999999997766 99999999999999999998 9999986 5566
Q ss_pred EEec
Q 045516 594 VVDE 597 (675)
Q Consensus 594 ~V~~ 597 (675)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6653
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.94 E-value=0.0022 Score=63.83 Aligned_cols=101 Identities=25% Similarity=0.377 Sum_probs=80.4
Q ss_pred HHHHHH-hCCcccCCeeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCc
Q 045516 470 AHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE 548 (675)
Q Consensus 470 A~~Al~-l~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~ 548 (675)
|..|-. |++..+.|+.|+|.|+. ...|||.||...+..+. |.+.|..||.
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~-------------------------~a~l~V~nl~~~~sndl----l~~~f~~fg~ 57 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAM-------------------------HAELYVVNLMQGASNDL----LEQAFRRFGP 57 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeec-------------------------cceEEEEecchhhhhHH----HHHhhhhcCc
Confidence 455554 99999999999999985 36799999999998876 7888999999
Q ss_pred EEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC-C---ceeCCeeeEEecccc
Q 045516 549 ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS-G---TEIGGYSLVVDEAKQ 600 (675)
Q Consensus 549 I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln-g---~~~~Gr~l~V~~a~~ 600 (675)
|....++.|+ .+++.+-++|.|...-.+..|+. .+ + ....++.+-|.....
T Consensus 58 ~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq 113 (275)
T KOG0115|consen 58 IERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQ 113 (275)
T ss_pred cchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhc
Confidence 9998888874 48899999999999999999986 32 2 233566666655443
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.89 E-value=0.0026 Score=58.79 Aligned_cols=71 Identities=23% Similarity=0.260 Sum_probs=53.6
Q ss_pred CceEEEcCCC-----CCCCH----HHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeE
Q 045516 416 SKTLFVGNLP-----FSVEQ----ADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486 (675)
Q Consensus 416 ~~tlfV~nLp-----~~~te----~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i 486 (675)
..||.|.=+. ...-. .+|.+.|..||.|+-||+. .+.-+|+|.+-..|-+||.|+|..+.|+.|
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-------~~~mwVTF~dg~sALaals~dg~~v~g~~l 99 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-------GDTMWVTFRDGQSALAALSLDGIQVNGRTL 99 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-------TTCEEEEESSCHHHHHHHHGCCSEETTEEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-------CCeEEEEECccHHHHHHHccCCcEECCEEE
Confidence 3566666555 11222 3678889999999999988 457899999999999999999999999999
Q ss_pred EEEeccc
Q 045516 487 RLDFARE 493 (675)
Q Consensus 487 ~V~~a~~ 493 (675)
+|.+..+
T Consensus 100 ~i~LKtp 106 (146)
T PF08952_consen 100 KIRLKTP 106 (146)
T ss_dssp EEEE---
T ss_pred EEEeCCc
Confidence 9988754
No 177
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.86 E-value=0.011 Score=68.97 Aligned_cols=60 Identities=8% Similarity=0.170 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHhhhCCC-----eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 425 PFSVEQADVQNFFSEVAE-----VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 425 p~~~te~~L~~~F~~~G~-----I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
-..++..+|..++..-+. |-.|.|. ..|.||+.... .+...|. |++..+.|+.|.|..+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcChh-hHHHHHHHhccccccCCceEEEECC
Confidence 356888899888887654 4556666 56899998755 4667776 99999999999998763
No 178
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.004 Score=67.76 Aligned_cols=63 Identities=27% Similarity=0.369 Sum_probs=59.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhh-hCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFS-EVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE 475 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~ 475 (675)
....+|||||+||--++.++|-.+|. .||.|..|-|-.|+ .+..+|-|-|.|.+...-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 45679999999999999999999999 79999999999995 78899999999999999999996
No 179
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.63 E-value=0.0038 Score=47.86 Aligned_cols=52 Identities=37% Similarity=0.602 Sum_probs=42.4
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHH
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL 581 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al 581 (675)
+.|.|.|++....+. +..+|..||+|..+.+... ..+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-----vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-----VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-----HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 578899988665544 5568889999999998733 568999999999999985
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.57 E-value=0.0041 Score=62.80 Aligned_cols=82 Identities=11% Similarity=0.185 Sum_probs=61.6
Q ss_pred ceEEEEecCC-CCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCe-eeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 518 AHTIFIKGFD-SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSV-KGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 518 ~~~lfV~nLp-~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~-rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.|.++|+- ..--.++|...+.+.+++||.|.+|.|+.....-.. ---.||+|...+.|.+|+- |||++|+||.++
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 4445555543 333456777778899999999999988876432111 2247999999999999986 999999999998
Q ss_pred Eeccc
Q 045516 595 VDEAK 599 (675)
Q Consensus 595 V~~a~ 599 (675)
..|..
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 87764
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.42 E-value=0.0047 Score=64.75 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=64.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCC---CCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDT---GSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLV 594 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~t---G~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~ 594 (675)
...|.|.||.++++.++ |+.||+..|.|..++|+..... ......|||.|.+...+..|..|.++.|-++.|.
T Consensus 7 ~~vIqvanispsat~dq----m~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdrali 82 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQ----MQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALI 82 (479)
T ss_pred CceeeecccCchhhHHH----HHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEE
Confidence 35899999999999887 8889999999999999885432 3456789999999999999998999998888877
Q ss_pred Eecc
Q 045516 595 VDEA 598 (675)
Q Consensus 595 V~~a 598 (675)
|..+
T Consensus 83 v~p~ 86 (479)
T KOG4676|consen 83 VRPY 86 (479)
T ss_pred EEec
Confidence 7644
No 182
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.28 E-value=0.0011 Score=74.62 Aligned_cols=7 Identities=0% Similarity=0.079 Sum_probs=1.5
Q ss_pred eEEeccc
Q 045516 593 LVVDEAK 599 (675)
Q Consensus 593 l~V~~a~ 599 (675)
|.+.|-.
T Consensus 457 itlSWk~ 463 (556)
T PF05918_consen 457 ITLSWKE 463 (556)
T ss_dssp ---TTS-
T ss_pred cceeeee
Confidence 4455443
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.19 E-value=0.0038 Score=68.69 Aligned_cols=77 Identities=14% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCcee---C
Q 045516 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI---G 589 (675)
Q Consensus 514 ~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~---~ 589 (675)
+...++.|||.||-..+|.-+|+.+|.. .||.|....|-+ .+-.|||.|.+.+.|...+. |||..| +
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~r---tgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGR---TGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhh---ccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 4456899999999999998885544443 467777664432 36789999999999999998 999887 6
Q ss_pred CeeeEEeccc
Q 045516 590 GYSLVVDEAK 599 (675)
Q Consensus 590 Gr~l~V~~a~ 599 (675)
++.|.+.|..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 7889888885
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.19 E-value=0.012 Score=59.63 Aligned_cols=76 Identities=26% Similarity=0.301 Sum_probs=58.1
Q ss_pred ceEEEcCC--CCCCC---HHHHHHHhhhCCCeEEEEEeeCCCC--CcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 417 KTLFVGNL--PFSVE---QADVQNFFSEVAEVVDVRLSSDADG--RFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 417 ~tlfV~nL--p~~~t---e~~L~~~F~~~G~I~~v~i~~~~~g--~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
+.|.++|+ +-.+. ++++.+-+.+||.|..|.|+..++. .-.-.-||+|...+.|.+|+- |||.+|+||.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 44666665 22333 4567888999999999999877521 123457999999999999995 9999999999988
Q ss_pred Eecc
Q 045516 489 DFAR 492 (675)
Q Consensus 489 ~~a~ 492 (675)
.|..
T Consensus 362 ~Fyn 365 (378)
T KOG1996|consen 362 CFYN 365 (378)
T ss_pred eecc
Confidence 7753
No 185
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.14 E-value=0.0061 Score=70.18 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=68.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~ 489 (675)
...++.|||++|..++....|...|..||.|..|.+.. ..-|+||.|.+...++.|+. |-|..|+| ++|+|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 34678999999999999999999999999999987763 25799999999999999998 99999975 779999
Q ss_pred eccccCC
Q 045516 490 FARERGA 496 (675)
Q Consensus 490 ~a~~~~~ 496 (675)
|+...+.
T Consensus 527 la~~~~~ 533 (975)
T KOG0112|consen 527 LASPPGA 533 (975)
T ss_pred cccCCCC
Confidence 9876543
No 186
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.13 E-value=0.003 Score=62.90 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=57.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCC--------CCee----eEEEEEeCCHHHHHHHHH-hC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDT--------GSVK----GIAYLDFTDADSFNKALE-MS 584 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~t--------G~~r----G~afV~F~~~e~A~~Al~-ln 584 (675)
...|||.+||+.+.... |++||+.||.|-+|.|.+...+ |..+ --|.|+|.+...|.++.. ||
T Consensus 74 ~GVvylS~IPp~m~~~r----lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVR----LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred ceEEEeccCCCccCHHH----HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 57899999999999988 6677778899999998876544 2222 237789999999999987 99
Q ss_pred CceeCCee
Q 045516 585 GTEIGGYS 592 (675)
Q Consensus 585 g~~~~Gr~ 592 (675)
|..|+|+.
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 99999864
No 187
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.24 E-value=0.013 Score=65.62 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 411 ~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
.+.....+|||+||.+.+..+-++.++..||.|..+.... |||..|........|+. ++-..++|..|.+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3356778999999999999999999999999998876653 99999999999999998 78888888888776
Q ss_pred eccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHH
Q 045516 490 FARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536 (675)
Q Consensus 490 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~ 536 (675)
.-..........+...............-+.++|.|++..+....+.
T Consensus 107 ~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~ 153 (668)
T KOG2253|consen 107 VDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHK 153 (668)
T ss_pred chhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHH
Confidence 53221111111100001111111111114667778877776665533
No 188
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=95.09 E-value=0.1 Score=49.47 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.9
Q ss_pred CcEEEEEe
Q 045516 547 GEITRISV 554 (675)
Q Consensus 547 G~I~~v~i 554 (675)
|.|..+.+
T Consensus 99 G~i~d~~f 106 (215)
T KOG3262|consen 99 GPINDVHF 106 (215)
T ss_pred ccccccEE
Confidence 55554443
No 189
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.94 E-value=0.23 Score=55.88 Aligned_cols=9 Identities=0% Similarity=-0.020 Sum_probs=3.7
Q ss_pred EEEEecCCC
Q 045516 520 TIFIKGFDS 528 (675)
Q Consensus 520 ~lfV~nLp~ 528 (675)
.|+.-++|.
T Consensus 316 ~VI~~~~P~ 324 (456)
T PRK10590 316 HVVNYELPN 324 (456)
T ss_pred EEEEeCCCC
Confidence 344344443
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.92 E-value=0.023 Score=55.20 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=45.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhh-CCCe---EEEEEeeCC--C-CCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSE-VAEV---VDVRLSSDA--D-GRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~-~G~I---~~v~i~~~~--~-g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
....|.|++||+++|++++++.+.. ++.. ..+...... . -.....|||.|.+.+++...+. ++|+.|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4569999999999999999998877 6665 333322332 1 1234579999999999999997 9998773
No 191
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.90 E-value=0.027 Score=56.27 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=62.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--C--cccCCeeEEEEec
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN--G--QMLGNRAIRLDFA 491 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~--g--~~~~gr~i~V~~a 491 (675)
..|||.||...+..+.|..-|..||.|....++.|..++..+-++|.|...-.+.+|+. ++ + ....+++.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 68999999999999999999999999999888888889999999999999999999996 32 2 2334555555444
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=0.047 Score=55.75 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=56.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeE-EEEecccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAI-RLDFARER 494 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i-~V~~a~~~ 494 (675)
..-|-|-++|... -.-|..+|.+||.|+.+... +.-.|-||.|.+.-+|++||..||++|+|..| =|..+..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 3567777777654 35688999999999888765 23569999999999999999999999988654 45555443
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.53 E-value=0.015 Score=60.49 Aligned_cols=79 Identities=16% Similarity=0.369 Sum_probs=63.3
Q ss_pred CceEEEcCCCCCCCHHHHH---HHhhhCCCeEEEEEeeCC--CCCc--ccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 416 SKTLFVGNLPFSVEQADVQ---NFFSEVAEVVDVRLSSDA--DGRF--KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~~~--~g~~--kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
.+-+||-+|+..+..+.+. ++|.+||.|..|.+..+. .... ---+||+|...++|..||. .+|+.+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678999999888776664 499999999999998865 2111 2237999999999999998 999999999988
Q ss_pred EEecccc
Q 045516 488 LDFARER 494 (675)
Q Consensus 488 V~~a~~~ 494 (675)
+.+....
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8776543
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.35 E-value=0.095 Score=53.58 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=55.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeee-EEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL-VVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l-~V~ 596 (675)
...|.|-+|+....- +|-.+|.+||.|.......+ -.|-+|.|.+.-+|.+||..||..|+|..| -|.
T Consensus 197 D~WVTVfGFppg~~s-----~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-----IVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVK 265 (350)
T ss_pred cceEEEeccCccchh-----HHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeee
Confidence 467778888776554 36678999999988766533 569999999999999999999999998653 444
Q ss_pred cccc
Q 045516 597 EAKQ 600 (675)
Q Consensus 597 ~a~~ 600 (675)
.+..
T Consensus 266 pCtD 269 (350)
T KOG4285|consen 266 PCTD 269 (350)
T ss_pred ecCC
Confidence 4443
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.32 E-value=0.021 Score=61.53 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSV-EQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
.+.+.|-+.-+|+.+ +..+|..+|.+||.|.+|.+-+. .-.|.|+|.+...|..|...++..|++|.|+|.|..
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 456777777777776 56789999999999999998764 456899999999999999999999999999999987
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
...
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 643
No 196
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.26 Score=54.75 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhC----CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEE
Q 045516 413 SGGSKTLFVGNLPFS-VEQADVQNFFSEV----AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIR 487 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~ 487 (675)
...+++|-|-||.|. +...+|.-+|..| |.|+.|.|+...-|+.+ |.--.+.|-++.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeR------------------M~eEeV~GP~~e 232 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKER------------------MKEEEVHGPPKE 232 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHH------------------hhhhcccCChhh
Confidence 457899999999987 6888999999876 47999998865422211 222334444333
Q ss_pred EEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEE
Q 045516 488 LDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIA 567 (675)
Q Consensus 488 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~a 567 (675)
+.-...... . .. ......+..++..|++|- ++.+ ..-||
T Consensus 233 l~~~~e~~~---~-----------------s~------sD~ee~~~~~~~kLR~Yq--~~rL-------------kYYyA 271 (650)
T KOG2318|consen 233 LFKPVEEYK---E-----------------SE------SDDEEEEDVDREKLRQYQ--LNRL-------------KYYYA 271 (650)
T ss_pred hccccccCc---c-----------------cc------cchhhhhhHHHHHHHHHH--hhhh-------------eeEEE
Confidence 321110000 0 00 111222233455566551 1111 13489
Q ss_pred EEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 568 YLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 568 fV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
.|+|.+...|..... .+|..|....+.+.+
T Consensus 272 VvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 272 VVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred EEEecCchHHHHHHHhcCcceeccccceeee
Confidence 999999999999998 999999765544443
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.03 E-value=0.19 Score=41.98 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=41.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~ 477 (675)
+..||. +|......+|.+||+.||.|.--+|- -.-|||.+.+.+.|..++. ++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-------TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-------CCcEEEEeecHHHHHHHHHHhc
Confidence 456666 99999999999999999999877764 4589999999999999987 54
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.48 E-value=0.37 Score=44.23 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=60.1
Q ss_pred CCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 045516 513 GRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGY 591 (675)
Q Consensus 513 ~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr 591 (675)
...++..+|.|+=|..++...+-...+....+.||.|..|.+.. +-.|.|.|.+..+|.+|+. ++. ...|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 34567899999988888765433334455568899999998865 4569999999999999998 544 66778
Q ss_pred eeEEeccc
Q 045516 592 SLVVDEAK 599 (675)
Q Consensus 592 ~l~V~~a~ 599 (675)
.+++.|..
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 88887754
No 199
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=93.45 E-value=0.22 Score=48.36 Aligned_cols=8 Identities=63% Similarity=1.074 Sum_probs=4.4
Q ss_pred ceEEEcCC
Q 045516 417 KTLFVGNL 424 (675)
Q Consensus 417 ~tlfV~nL 424 (675)
+.++|+||
T Consensus 6 ~V~LiGrL 13 (182)
T PRK06958 6 KVILVGNL 13 (182)
T ss_pred EEEEEEEe
Confidence 44556665
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.02 E-value=0.69 Score=41.16 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=51.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
..+..+.+...|+.++.+.|..|...+- .|..++|+++.. .++=.+.|.|.+...|...+. +||+.|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3445566666677777777877766654 477888988743 256679999999999999997 9999885
No 201
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=92.91 E-value=0.14 Score=56.33 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=57.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNR 484 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr 484 (675)
-.|+|||+|++++++-.+|..++..+-.+..+-+.... ...+..+++|+|.---.+.-|+. ||++.+.-.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 35899999999999999999999998777777766554 56678889999998888888886 888777543
No 202
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.83 E-value=0.031 Score=63.14 Aligned_cols=9 Identities=33% Similarity=0.010 Sum_probs=3.3
Q ss_pred cCHHHHHHH
Q 045516 465 ASVEDAHKA 473 (675)
Q Consensus 465 ~~~e~A~~A 473 (675)
...|..-.+
T Consensus 331 s~vEcLL~a 339 (556)
T PF05918_consen 331 SYVECLLYA 339 (556)
T ss_dssp HHHHHHHHH
T ss_pred hHhhHHHHH
Confidence 333333333
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.82 E-value=2.6 Score=43.41 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=102.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC--------CCCcccEEEEEecCHHHHHHHHH-----hC--Cc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA--------DGRFKGYGHVEFASVEDAHKAIE-----LN--GQ 479 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--------~g~~kG~afV~F~~~e~A~~Al~-----l~--g~ 479 (675)
-+|.|.+.||...++--.+...|-+||+|..|+|+.+. .-.....+.+-|-+.+.+-..+. |+ .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999775 22345678899999988765542 21 23
Q ss_pred ccCCeeEEEEeccccCCCCC--CCCCCCC-----CCcc-CCCCCCCceEEEEecCCCCc-CHHHHHHHHHhhhcccC---
Q 045516 480 MLGNRAIRLDFARERGAYTP--YSGGNES-----NSFQ-KGGRGQAAHTIFIKGFDSSV-GEDQVRASLEEHFGSCG--- 547 (675)
Q Consensus 480 ~~~gr~i~V~~a~~~~~~~~--~~~~~~~-----~~~~-~~~~~~~~~~lfV~nLp~~~-te~~i~~~L~~~F~~~G--- 547 (675)
.|.-..|.|.|..-.-.... .....+. ..++ ........+.|.|.= ...+ ..+-++..| .+...-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL-~fL~~~~n~R 171 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKL-PFLKNSNNKR 171 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhh-hhhccCCCce
Confidence 45556666666542111100 0000000 0111 111122356666653 3444 444444444 3333334
Q ss_pred -cEEEEEecccC--CCCCeeeEEEEEeCCHHHHHHHHH
Q 045516 548 -EITRISVPKDY--DTGSVKGIAYLDFTDADSFNKALE 582 (675)
Q Consensus 548 -~I~~v~i~~d~--~tG~~rG~afV~F~~~e~A~~Al~ 582 (675)
.|+.|.|+... ....+..||.++|-+...|...+.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~d 209 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLD 209 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHH
Confidence 35666666542 335578899999999999999887
No 204
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.82 E-value=0.51 Score=37.33 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=42.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhC---CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEV---AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~ 475 (675)
..|+|+||. +++.++|+.||..| .....|..+.| --|=|.|.+...|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD------tScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD------TSCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC------CcEEEEECCHHHHHHHHH
Confidence 479999995 68999999999998 23556777765 358899999999999995
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.57 E-value=0.082 Score=57.18 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=60.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.+.|-+.-.++.++.- ..|..+|.+||.|..|.|-.. --.|.|+|.+...|..|...++..|++|.|.|.|
T Consensus 372 hs~l~lek~~~glnt~---a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTI---ADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred cchhhhhccCCCCchH---hhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEE
Confidence 3455555566665532 358999999999999988554 3458999999999999999999999999999999
Q ss_pred cccC
Q 045516 598 AKQR 601 (675)
Q Consensus 598 a~~r 601 (675)
-.+.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8773
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.42 E-value=0.081 Score=44.92 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=51.0
Q ss_pred EEEEecCHHHHHHHHH--hCCcccCCeeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHH
Q 045516 460 GHVEFASVEDAHKAIE--LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRA 537 (675)
Q Consensus 460 afV~F~~~e~A~~Al~--l~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~ 537 (675)
|+|+|....-|++.+. .+...+.+..+.|....-.... ...++ .......++|.|.|||..+.++.+++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~--------~~k~q-v~~~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGH--------LQKFQ-VFSGVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCC--------ceEEE-EEEcccCCEEEEeCCCCCCChhhhee
Confidence 6899999999999997 4566677777777554211100 00111 01123478999999999999999777
Q ss_pred HHHhhhc
Q 045516 538 SLEEHFG 544 (675)
Q Consensus 538 ~L~~~F~ 544 (675)
.|.-+|+
T Consensus 72 ~LeIhFq 78 (88)
T PF07292_consen 72 KLEIHFQ 78 (88)
T ss_pred eEEEEEe
Confidence 6666665
No 207
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.22 E-value=0.51 Score=43.31 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=55.7
Q ss_pred CCceEEEcCCCCCCC----HHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEe
Q 045516 415 GSKTLFVGNLPFSVE----QADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~t----e~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~ 490 (675)
...||.|+=|..++. ...|...++.||+|..|.+.- +-.|.|.|.+...|-+|+..-.....|..+++.|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCCCCCceEEeec
Confidence 456899987766653 334566778899999998873 6689999999999999998334477788888877
Q ss_pred cc
Q 045516 491 AR 492 (675)
Q Consensus 491 a~ 492 (675)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 208
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.08 E-value=0.42 Score=46.42 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=44.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcE---EEEEeccc--CCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC-
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEI---TRISVPKD--YDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG- 590 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I---~~v~i~~d--~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G- 590 (675)
...|.|++||+++++++++..|..+ ++.. .++..... ...-....-|||.|.+.+++..-+. ++|+.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~---l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPW---LPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS-----SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhh---cccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4689999999999999954422221 3433 33331111 1111234569999999999888887 99988743
Q ss_pred ----eeeEEeccc
Q 045516 591 ----YSLVVDEAK 599 (675)
Q Consensus 591 ----r~l~V~~a~ 599 (675)
....|.++.
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 234555553
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.93 E-value=0.33 Score=47.36 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=45.2
Q ss_pred CHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEEeccc
Q 045516 429 EQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN--GQMLGNRAIRLDFARE 493 (675)
Q Consensus 429 te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~--g~~~~gr~i~V~~a~~ 493 (675)
....|+.||..|+.+..+.+++ +-+-..|.|.+.+.|..|.. |+ +..|.|..|+|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4578999999999988887774 36778999999999999998 88 9999999999999843
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.95 E-value=0.41 Score=52.86 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=58.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhh--CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h--CCcccCCeeEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSE--VAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-L--NGQMLGNRAIR 487 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l--~g~~~~gr~i~ 487 (675)
+...|.|+|+-||.++-.++|+.||.. |-.+++|.|..+ .-.||+|.+..+|+.|+. | --..|.|++|.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 345688999999999999999999985 888999998764 357999999999999986 3 33567777775
Q ss_pred EEec
Q 045516 488 LDFA 491 (675)
Q Consensus 488 V~~a 491 (675)
.++.
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 5443
No 211
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=90.59 E-value=0.63 Score=44.33 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=5.6
Q ss_pred EEEecCHHHHHHH
Q 045516 461 HVEFASVEDAHKA 473 (675)
Q Consensus 461 fV~F~~~e~A~~A 473 (675)
=|.+++.+.+-+.
T Consensus 82 PIylenk~qIGKV 94 (215)
T KOG3262|consen 82 PIYLENKEQIGKV 94 (215)
T ss_pred ceeecchhhhcch
Confidence 3444444444333
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.28 E-value=0.12 Score=54.06 Aligned_cols=82 Identities=17% Similarity=0.370 Sum_probs=61.2
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCC--CC-CeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYD--TG-SVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~--tG-~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
.+-+||-+|+..+..+.+.+ =..+|++||.|..|.+..+.- .+ ...--+||+|...++|..||. .+|..+.|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~-~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLE-RTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhh-CcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 35678888888876554221 236899999999999988762 11 112238999999999999998 99999999987
Q ss_pred EEecccc
Q 045516 594 VVDEAKQ 600 (675)
Q Consensus 594 ~V~~a~~ 600 (675)
.+.+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7776643
No 213
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.18 E-value=0.74 Score=51.73 Aligned_cols=8 Identities=25% Similarity=0.019 Sum_probs=3.4
Q ss_pred eeEEEEEe
Q 045516 564 KGIAYLDF 571 (675)
Q Consensus 564 rG~afV~F 571 (675)
.|.|++-+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 34454433
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.82 E-value=0.65 Score=45.34 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEEeccccC
Q 045516 533 DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS--GTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 533 ~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln--g~~~~Gr~l~V~~a~~r 601 (675)
.++...|+.+|..|+.+..+.+++.+ +-..|.|.+.+.|..|+. |+ +..|.|..|+|.|+..-
T Consensus 6 ~~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 6 PDNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp ---HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34556799999999988888777654 347899999999999998 89 99999999999998543
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.56 E-value=0.81 Score=49.53 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=57.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCC
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN 483 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g 483 (675)
++.|+|-.+|-.++--+|..|+..|- .|.+|+|+++... ++=..+|.|.+..+|...++ +||..|.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999998754 5999999996422 34568999999999999997 99999964
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.89 E-value=0.56 Score=54.34 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=66.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCccc--CCeeEEEEeccc
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQML--GNRAIRLDFARE 493 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~--~gr~i~V~~a~~ 493 (675)
.+.++.|++-+.+-.-|..+|..||.|.++|+.++ -..|.|.|...+.|..|+. |+|+.+ -|-+.+|.++..
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 35566677778888999999999999999999876 5789999999999999998 999876 688899999987
Q ss_pred cCCCCCC
Q 045516 494 RGAYTPY 500 (675)
Q Consensus 494 ~~~~~~~ 500 (675)
-..+.+.
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 6555443
No 217
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.68 E-value=4.5 Score=32.04 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=42.2
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE 582 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~ 582 (675)
...|+|+|+. +++.++|..+|..||..-+ ..+|..+-|- -|-|.|.+...|.+||.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 4689999986 5777888888888865433 4455555552 48899999999999986
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.41 E-value=4.1 Score=33.38 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhhhCCC-----eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 426 FSVEQADVQNFFSEVAE-----VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 426 ~~~te~~L~~~F~~~G~-----I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
..++..+|..+|...+. |-.|.|. ..|+||+.... .+..+|. |++..+.|+.|.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788899999887653 6788887 46999998766 6778887 9999999999999864
No 219
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=84.34 E-value=0.56 Score=50.11 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=52.9
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCc-eeCCeeeEEe
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT-EIGGYSLVVD 596 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~-~~~Gr~l~V~ 596 (675)
+.||++||...++..++...|.+.-..+ .-.++ .-.||+||.+.+...+.+|++ ++|. .+.|.++.|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~----~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPG----SGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCC----Cccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 4689999999999999544433331110 00111 126899999999999999999 7774 5889999988
Q ss_pred ccccCCC
Q 045516 597 EAKQRGD 603 (675)
Q Consensus 597 ~a~~r~~ 603 (675)
..-+...
T Consensus 72 ~sv~kkq 78 (584)
T KOG2193|consen 72 HSVPKKQ 78 (584)
T ss_pred chhhHHH
Confidence 7765443
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.18 E-value=0.73 Score=52.17 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=56.5
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
++..++||+|+-+.+...- +..+...||.|..+.... |||+.|..+....+|+. ++-..++|..|.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~----~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEF----WKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCCceeEecchhhhhhHHH----HHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 4478999999999888875 667777889887775543 89999999999999998 888888887776
Q ss_pred Eec
Q 045516 595 VDE 597 (675)
Q Consensus 595 V~~ 597 (675)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 654
No 221
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=82.94 E-value=2.7 Score=46.72 Aligned_cols=65 Identities=9% Similarity=0.262 Sum_probs=47.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhc--ccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCC--ceeCCee
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFG--SCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSG--TEIGGYS 592 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~--~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng--~~~~Gr~ 592 (675)
.++|+|+-|+.++..++ ++-||. .|-.++.|.+..+. -=||+|.+..+|..|+. |.. ..|.|..
T Consensus 175 RcIvilREIpettp~e~----Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEV----VKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred eeEEEEeecCCCChHHH----HHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 48889999999999988 455664 47788888887653 25999999999999975 322 3455554
Q ss_pred e
Q 045516 593 L 593 (675)
Q Consensus 593 l 593 (675)
|
T Consensus 244 I 244 (684)
T KOG2591|consen 244 I 244 (684)
T ss_pred h
Confidence 4
No 222
>PHA00370 III attachment protein
Probab=82.89 E-value=5.9 Score=39.89 Aligned_cols=7 Identities=14% Similarity=-0.112 Sum_probs=2.5
Q ss_pred CeeeEEe
Q 045516 590 GYSLVVD 596 (675)
Q Consensus 590 Gr~l~V~ 596 (675)
+..+-|.
T Consensus 72 ~~W~P~g 78 (297)
T PHA00370 72 GSWKPTG 78 (297)
T ss_pred cceeecc
Confidence 3333333
No 223
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.14 E-value=4.5 Score=32.48 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=42.5
Q ss_pred CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 427 SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 427 ~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
.++-++|+..|..|+-. +|+.+. .| -||.|.+..+|++++. .|+..|.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999632 333444 33 4899999999999998 8999998888765
No 224
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.58 E-value=7.9 Score=34.48 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=45.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhccc-CcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSC-GEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~-G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G 590 (675)
...+.+...|+-++-+.| ..+...+ ..|..++|+++. ...+-+++|.|.+...|..-.. +||..|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l----~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFL----LFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHH----HHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455555555555553 2222222 467888998873 2357789999999999999987 99999875
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=80.99 E-value=1.3 Score=41.54 Aligned_cols=121 Identities=11% Similarity=0.014 Sum_probs=75.4
Q ss_pred eEEEcCC-C-CCCCHHHHHHHhhh-CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecccc
Q 045516 418 TLFVGNL-P-FSVEQADVQNFFSE-VAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 418 tlfV~nL-p-~~~te~~L~~~F~~-~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~~ 494 (675)
...|+.+ . ..++-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++......|.|..|.+..-.+.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 3444444 2 34566667666654 232223333221 268999999999999999998888888888887665432
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEeccc
Q 045516 495 GAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKD 557 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d 557 (675)
....... ......-|.|.|||..+-..+ .|..+.+.+|.+..+.....
T Consensus 93 ~~~~~~~------------~~~~~vWVri~glP~~~~~~~---~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 93 FNPSEVK------------FEHIPVWVRIYGLPLHLWSEE---ILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccc------------eeccchhhhhccCCHHHhhhH---HHHHHHHhcCCeEEEEcCCC
Confidence 1111000 011135577889997755443 36777788899999877654
No 226
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.33 E-value=8.6 Score=31.45 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=33.5
Q ss_pred CCcCHHHHHHHHHhhhccc-CcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecc
Q 045516 528 SSVGEDQVRASLEEHFGSC-GEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEA 598 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~-G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a 598 (675)
..++..+|..+|....+-- ..|-.|+|... |+||+-... .+..++. |++..+.|+.|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566667655555553322 26788888665 688887655 6777777 9999999999999864
No 227
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=77.20 E-value=4.1 Score=46.83 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=12.4
Q ss_pred CCCCcCHHHHHHHHHhhhc
Q 045516 526 FDSSVGEDQVRASLEEHFG 544 (675)
Q Consensus 526 Lp~~~te~~i~~~L~~~F~ 544 (675)
.-+++.+++++-+|+.+++
T Consensus 7 ~rWDW~~ED~K~VvqRVL~ 25 (828)
T PF04094_consen 7 ERWDWGPEDFKMVVQRVLN 25 (828)
T ss_pred CcCCCCHHHHHHHHHHHhc
Confidence 3456777777777776653
No 228
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.86 E-value=6.8 Score=42.69 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=55.1
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G 590 (675)
+..|+|-.+|..++..+|..++--+ .-.|..|+|++|. --.+-+.+|.|.+..+|....+ +||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~---~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASF---IKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHH---hhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999976655532 2468889998863 2346679999999999999998 99999875
No 229
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=73.31 E-value=18 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=36.9
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS 584 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln 584 (675)
+..+|. ||...-..+ |.++|..||.|.---| -+ .-|||...+.+.+..++. +.
T Consensus 10 HVFhlt-FPkeWK~~D----I~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSD----IYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHH----HHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhh----HHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhc
Confidence 444554 998888877 7899999998754333 33 369999999999999887 54
No 230
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=73.22 E-value=33 Score=39.78 Aligned_cols=16 Identities=6% Similarity=-0.099 Sum_probs=8.9
Q ss_pred EEEEecCHHHHHHHHH
Q 045516 460 GHVEFASVEDAHKAIE 475 (675)
Q Consensus 460 afV~F~~~e~A~~Al~ 475 (675)
++|.+.+...|+....
T Consensus 260 ~LVF~nt~~~ae~l~~ 275 (572)
T PRK04537 260 TMVFVNTKAFVERVAR 275 (572)
T ss_pred EEEEeCCHHHHHHHHH
Confidence 4555556666665554
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=72.24 E-value=3.3 Score=39.55 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=48.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCC--CcccEEEEEecCHHHHHHHHHhCCcccCCeeEE
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADG--RFKGYGHVEFASVEDAHKAIELNGQMLGNRAIR 487 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g--~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~ 487 (675)
.|++|.. +.....++|..|-. |.+.+|.+.+..++ .++|-.||.|.+.+.+.++++-+...+.-+.|.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~ 180 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELK 180 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHH
Confidence 4678877 33333444444544 79999998887766 789999999999999999887555444444443
No 232
>COG4907 Predicted membrane protein [Function unknown]
Probab=69.97 E-value=6.7 Score=42.82 Aligned_cols=10 Identities=10% Similarity=0.036 Sum_probs=5.4
Q ss_pred cEEEEEeccc
Q 045516 548 EITRISVPKD 557 (675)
Q Consensus 548 ~I~~v~i~~d 557 (675)
.++.|+|-.+
T Consensus 505 ~pesI~~W~~ 514 (595)
T COG4907 505 KPESIHLWEQ 514 (595)
T ss_pred CCcceehHhh
Confidence 4556665544
No 233
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=69.61 E-value=8.4 Score=34.22 Aligned_cols=6 Identities=0% Similarity=0.318 Sum_probs=2.2
Q ss_pred eeEEEE
Q 045516 484 RAIRLD 489 (675)
Q Consensus 484 r~i~V~ 489 (675)
++|.|.
T Consensus 13 ~pmlvE 18 (134)
T KOG3293|consen 13 HPMLVE 18 (134)
T ss_pred CeEEEE
Confidence 333333
No 234
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=69.12 E-value=3.3 Score=48.32 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=63.3
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCcee--CCeeeEE
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI--GGYSLVV 595 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~--~Gr~l~V 595 (675)
.+.++.|.+-+++-.- |..+|..||.|..++..++. .+|.|.|...+.|..|+. |+|..+ .|-+.+|
T Consensus 299 p~~~~~nn~v~~tSss----L~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V 368 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSS----LATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRV 368 (1007)
T ss_pred chhhhhcccccchHHH----HHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeE
Confidence 4445555555555554 88899999999999998884 589999999999999998 999875 6889999
Q ss_pred eccccCCCCCCC
Q 045516 596 DEAKQRGDFGSG 607 (675)
Q Consensus 596 ~~a~~r~~~~~g 607 (675)
.+++.-..+..+
T Consensus 369 ~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 369 SFAKTLPMYEPP 380 (1007)
T ss_pred EeccccccccCC
Confidence 999887766544
No 235
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=68.62 E-value=2.1 Score=45.79 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCCCCHH--------HHHHHhhh--CCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH
Q 045516 415 GSKTLFVGNLPFSVEQA--------DVQNFFSE--VAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE 475 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~--------~L~~~F~~--~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~ 475 (675)
..|.+|+.++....... +|..+|.. ++++..|++.++. +..++|..|++|.....+++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34788888887665555 89999998 7889999999998 88899999999999999999885
No 236
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=66.86 E-value=4.6 Score=43.20 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=49.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCC-eEEEEEeeCC---CCCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAE-VVDVRLSSDA---DGRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~~~~---~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
-+.|.|.+||..+++.+|.+....|-. |....|.... ...-.+++||.|..++++..... ++|++|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 468999999999999999998877543 3333333221 12347889999999999888887 8888763
No 237
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=65.35 E-value=11 Score=33.60 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=6.2
Q ss_pred CCcccCCeeEEEE
Q 045516 477 NGQMLGNRAIRLD 489 (675)
Q Consensus 477 ~g~~~~gr~i~V~ 489 (675)
||..|.|....|+
T Consensus 21 Nget~nGhL~~cD 33 (134)
T KOG3293|consen 21 NGETYNGHLVNCD 33 (134)
T ss_pred CCCEecceeecch
Confidence 4445555544443
No 238
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.15 E-value=10 Score=40.70 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=50.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCe-EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCee
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEV-VDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRA 485 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~ 485 (675)
-.+.|-|.|+|.....++|..+|..|+.- -+|.++- .-.+|-.|.+...|..||.|...+|.-|+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------dthalaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------DTHALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee------cceeEEeecchHHHHHHhhccCceEEeee
Confidence 45789999999999999999999999753 3444443 35899999999999999987444443333
No 239
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=62.38 E-value=16 Score=42.77 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=15.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhC
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEV 440 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~ 440 (675)
.....|||.+-.... +-|+.+.+.+
T Consensus 665 rg~d~Lfi~~~hp~~--e~i~~lysk~ 689 (931)
T KOG2044|consen 665 RGPDLLFISDKHPLF--EFILQLYSKK 689 (931)
T ss_pred cCCceEEecCCCchH--HHHHHHHHhh
Confidence 345577777765554 5566666554
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.56 E-value=25 Score=39.48 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=5.4
Q ss_pred EeCCHHHHHHHH
Q 045516 570 DFTDADSFNKAL 581 (675)
Q Consensus 570 ~F~~~e~A~~Al 581 (675)
.|.-++-+.+-|
T Consensus 520 lF~gpEFvrKHi 531 (648)
T KOG2295|consen 520 LFKGPEFVRKHI 531 (648)
T ss_pred hccCHHHHHHHH
Confidence 355555444433
No 241
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=58.97 E-value=31 Score=27.73 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=37.4
Q ss_pred CcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 529 SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 529 ~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.++-.+++..|+.+ + ..+|..+. .| -||.|.+..+|.+|+. .+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y----~---~~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY----R---WDRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC----C---cceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 34556666666655 3 22333332 23 4899999999999998 9999998888765
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.91 E-value=19 Score=28.44 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=16.7
Q ss_pred HHHHHHhhhCCCeEEEEEee
Q 045516 431 ADVQNFFSEVAEVVDVRLSS 450 (675)
Q Consensus 431 ~~L~~~F~~~G~I~~v~i~~ 450 (675)
.+||+||+.+|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999998777643
No 243
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=58.74 E-value=9.9 Score=36.58 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=56.0
Q ss_pred ceEEEEecCCCCc-CHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCe-eeE
Q 045516 518 AHTIFIKGFDSSV-GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGY-SLV 594 (675)
Q Consensus 518 ~~~lfV~nLp~~~-te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr-~l~ 594 (675)
..++++.+++..+ +....+..+..+|.+|-......+++- .++..|.|.++..|..|.- ++...|.|. .|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3556666666543 334445567788887777766666654 4567789999999999975 999999988 777
Q ss_pred EeccccC
Q 045516 595 VDEAKQR 601 (675)
Q Consensus 595 V~~a~~r 601 (675)
+.++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777643
No 244
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=54.16 E-value=4.4 Score=40.46 Aligned_cols=7 Identities=0% Similarity=0.055 Sum_probs=1.7
Q ss_pred hCCceeC
Q 045516 583 MSGTEIG 589 (675)
Q Consensus 583 lng~~~~ 589 (675)
+|+..++
T Consensus 115 fnnY~~D 121 (214)
T PF04959_consen 115 FNNYLLD 121 (214)
T ss_dssp HHHH---
T ss_pred HHHHhcC
Confidence 4444443
No 245
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=53.76 E-value=36 Score=39.97 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=10.9
Q ss_pred ccEEEEEecCHHHHHHHH
Q 045516 457 KGYGHVEFASVEDAHKAI 474 (675)
Q Consensus 457 kG~afV~F~~~e~A~~Al 474 (675)
.|.|.+-|-+..-.-.|+
T Consensus 631 QGIalLPFiDe~rLl~a~ 648 (931)
T KOG2044|consen 631 QGIALLPFIDERRLLSAV 648 (931)
T ss_pred cccccccccchhhHHHHH
Confidence 466666666666555555
No 246
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=53.75 E-value=82 Score=35.56 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=10.5
Q ss_pred HHhCCceeCCeeeE
Q 045516 581 LEMSGTEIGGYSLV 594 (675)
Q Consensus 581 l~lng~~~~Gr~l~ 594 (675)
+++-|..+.|+.|+
T Consensus 423 yeiLGLn~~Gqsir 436 (582)
T PF03276_consen 423 YEILGLNARGQSIR 436 (582)
T ss_pred HHHhCccccccccc
Confidence 34557888899988
No 247
>PF12343 DEADboxA: Cold shock protein DEAD box A; InterPro: IPR021046 This domain family is found in bacteria, and is typically between 68 and 89 amino acids in length. The family is found in association with PF00270 from PFAM, PF00271 from PFAM, PF03880 from PFAM. This family is the C-terminal region of DEAD box A, a protein expressed under conditions of cold shock which is involved in various cellular processes such as transcription, translation and DA recombination []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=52.99 E-value=54 Score=25.39 Aligned_cols=8 Identities=38% Similarity=0.854 Sum_probs=5.4
Q ss_pred CCCCCCCC
Q 045516 667 GKKTTFGD 674 (675)
Q Consensus 667 G~k~~f~d 674 (675)
-.+.+|+|
T Consensus 55 ~~RRRFGD 62 (63)
T PF12343_consen 55 APRRRFGD 62 (63)
T ss_pred cccccccc
Confidence 34678876
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=52.71 E-value=14 Score=36.98 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=29.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVR 447 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~ 447 (675)
.+.++||+-|||..+|++.|.++.+++|.+..+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4568999999999999999999999999655443
No 249
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=51.71 E-value=1e+02 Score=28.41 Aligned_cols=49 Identities=8% Similarity=0.373 Sum_probs=32.4
Q ss_pred CcCHHHHHHHHHhhhc-ccCcEEEE-EecccCCCCCeeeEEEEEeCCHHHHH
Q 045516 529 SVGEDQVRASLEEHFG-SCGEITRI-SVPKDYDTGSVKGIAYLDFTDADSFN 578 (675)
Q Consensus 529 ~~te~~i~~~L~~~F~-~~G~I~~v-~i~~d~~tG~~rG~afV~F~~~e~A~ 578 (675)
+.+..+|++.|..+|. .--.+..| .|...+..|.+.|||+| |.+.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5678899999999987 44444444 34455666777887776 45555443
No 250
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=48.87 E-value=41 Score=27.18 Aligned_cols=62 Identities=13% Similarity=0.284 Sum_probs=43.2
Q ss_pred HHHHHHHhhhcccC-cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCC
Q 045516 534 QVRASLEEHFGSCG-EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRG 602 (675)
Q Consensus 534 ~i~~~L~~~F~~~G-~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~ 602 (675)
+|.+.|+.+ | .|..|+-+....++.+..+-||++....+ ..+ ++-..|+++.|.|...+.++
T Consensus 3 ~I~~~L~~~----G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 3 EIKEELKDQ----GHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHc----CCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCCC
Confidence 344445544 5 67778777777677888889999877655 233 66677889999998776543
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=47.89 E-value=16 Score=39.15 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=46.3
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCC--CCCeeeEEEEEeCCHHHHHHHHH-hCCceeC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYD--TGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~--tG~~rG~afV~F~~~e~A~~Al~-lng~~~~ 589 (675)
...|.|.+||..++...+.+.|.-|-. .|.+..+..... .....+++||.|...++...-.. ++|+.|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~---~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPE---HVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCcc---ccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 467889999999999987666665332 222333332110 02236789999999999777776 8888773
No 252
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=47.68 E-value=59 Score=35.17 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhhC----CCeEEEEEeeCC
Q 045516 413 SGGSKTLFVGNLPFS-VEQADVQNFFSEV----AEVVDVRLSSDA 452 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~~~ 452 (675)
...+++|-|-||.|. +...+|.-+|+.| |.|..|.|+...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 456789999999987 6778899888875 568888887653
No 253
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=47.48 E-value=49 Score=34.06 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCe-EEEEEeeCCCCCcccEEEEEecCHH
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEV-VDVRLSSDADGRFKGYGHVEFASVE 468 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~g~~kG~afV~F~~~e 468 (675)
-..-|||+||+.++.-.+|+.-+...|-+ ..|.. .| +.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KG-HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee----ec-CCcceeEecCCcc
Confidence 34569999999999999999999876532 22222 22 3788999997653
No 254
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.41 E-value=25 Score=31.68 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=32.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEec-CHHHHHHHHHhC
Q 045516 418 TLFVGNLPFS---------VEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFA-SVEDAHKAIELN 477 (675)
Q Consensus 418 tlfV~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~-~~e~A~~Al~l~ 477 (675)
++.|-|++.. ++...|++.|..|..+. |+.+.+.. -+.|+++|.|. +......|+.|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHHHH
Confidence 4566676533 45688999999999875 54555544 35899999997 455556666543
No 255
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=45.40 E-value=61 Score=31.74 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=7.7
Q ss_pred CCceEEEcCCCCC
Q 045516 415 GSKTLFVGNLPFS 427 (675)
Q Consensus 415 ~~~tlfV~nLp~~ 427 (675)
..+.++|+||-.+
T Consensus 4 ~~~VtLiGrL~~D 16 (186)
T PRK07772 4 DTTITVVGNLTAD 16 (186)
T ss_pred cCEEEEEEEeCCC
Confidence 3456677777433
No 256
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=42.21 E-value=18 Score=34.86 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=52.7
Q ss_pred ceEEEcCCCCCCCHH-----HHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCe-eEEEE
Q 045516 417 KTLFVGNLPFSVEQA-----DVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNR-AIRLD 489 (675)
Q Consensus 417 ~tlfV~nLp~~~te~-----~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr-~i~V~ 489 (675)
.+|++.+|+..+-.+ ....+|.+|-.....++++ +.++.-|.|.++..|..|.- ++...|.|. .|.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 568888887654322 3455777776655555543 46777899999999999985 999999888 77777
Q ss_pred ecccc
Q 045516 490 FARER 494 (675)
Q Consensus 490 ~a~~~ 494 (675)
++...
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 77654
No 257
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.92 E-value=34 Score=27.68 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=39.5
Q ss_pred ccC-cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeccccC
Q 045516 545 SCG-EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 545 ~~G-~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~a~~r 601 (675)
.+| .+..|+.+...+++.+..+-||+......... -|+-..|+|+.|.|.....+
T Consensus 10 ~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 10 DIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCccc
Confidence 336 68888888888888888888998876532222 25667789999999866544
No 258
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.30 E-value=27 Score=35.62 Aligned_cols=66 Identities=21% Similarity=0.481 Sum_probs=44.4
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHhhhCCCeEEEEEeeCC------CCCc-----ccEE---------EEE
Q 045516 416 SKTLFVGNLPFS------------VEQADVQNFFSEVAEVVDVRLSSDA------DGRF-----KGYG---------HVE 463 (675)
Q Consensus 416 ~~tlfV~nLp~~------------~te~~L~~~F~~~G~I~~v~i~~~~------~g~~-----kG~a---------fV~ 463 (675)
..|||+.+||-. -+++.|+..|..||.|..|.|+... +|+. .||+ ||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 358999998822 4678899999999999998886432 3443 4443 455
Q ss_pred ecCHHHHHHHHH-hCCccc
Q 045516 464 FASVEDAHKAIE-LNGQML 481 (675)
Q Consensus 464 F~~~e~A~~Al~-l~g~~~ 481 (675)
|...-....||. |.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 655556666665 665544
No 259
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=41.16 E-value=38 Score=35.24 Aligned_cols=6 Identities=17% Similarity=0.611 Sum_probs=2.7
Q ss_pred HHHhhh
Q 045516 434 QNFFSE 439 (675)
Q Consensus 434 ~~~F~~ 439 (675)
.++|..
T Consensus 84 ~rlfd~ 89 (271)
T COG1512 84 TRLFDK 89 (271)
T ss_pred HHHHHh
Confidence 344444
No 260
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=41.13 E-value=2.4e+02 Score=29.19 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEE
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRL 448 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i 448 (675)
.....|+||||+++..-|..++...-.+..+.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 357899999999999999999987654433333
No 261
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=39.90 E-value=1.1e+02 Score=37.91 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=15.5
Q ss_pred eEEEEecCCCCc-CHHHHHHHHHhhhcc
Q 045516 519 HTIFIKGFDSSV-GEDQVRASLEEHFGS 545 (675)
Q Consensus 519 ~~lfV~nLp~~~-te~~i~~~L~~~F~~ 545 (675)
..+++.-+|.+- .++.|.+.|.+.|.+
T Consensus 4 h~f~ahea~GdekkddaiiDli~dqfek 31 (3015)
T KOG0943|consen 4 HHFVAHEAPGDEKKDDAIIDLIRDQFEK 31 (3015)
T ss_pred eEEEeccCCCccchhHHHHHHHHHHHHH
Confidence 445555555542 355666677777754
No 262
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=39.71 E-value=75 Score=28.33 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=60.6
Q ss_pred CCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCc--ccCCeeEEEEeccccCCCCCC
Q 045516 424 LPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQ--MLGNRAIRLDFARERGAYTPY 500 (675)
Q Consensus 424 Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al-~l~g~--~~~gr~i~V~~a~~~~~~~~~ 500 (675)
||+.+ ..|-++|+.-|.|.+|..+... .+ ..|| .++|. .++|. |+|.-......
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqy------------pd----ndal~~~~G~lE~vDg~-i~IGs~q~~~s---- 67 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQY------------PD----NDALLYVHGTLEQVDGN-IRIGSGQTPAS---- 67 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEecc------------CC----chhhheeeeehhhccCc-EEEccCCCccc----
Confidence 66655 4689999999999998776432 11 1122 24443 23444 55533221100
Q ss_pred CCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCH
Q 045516 501 SGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574 (675)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~ 574 (675)
....+.....+++| -|+.++..+++++|++-+ .|-.|.+-.+.+|-.-..+-.+||..|...
T Consensus 68 --------V~i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm-~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 68 --------VRIQGTPSGNNVIF---PPYTLTYNELRQIFREPM-VYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred --------EEEecCCCCCceec---CceeeeHHHHHHHHhhhh-hhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 00000001122222 467889999887777664 344566555666522222344778777654
No 263
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=37.90 E-value=52 Score=26.65 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=43.2
Q ss_pred HHHHHHhhhCC-CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 431 ADVQNFFSEVA-EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 431 ~~L~~~F~~~G-~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
.+|.+-|..+| .+..|+-+..+ ++......||+.....+.... |+=+.|+|+.|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I--l~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI--LNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce--EeehhhCCeeEEEecCcc
Confidence 47888899888 47888877776 466778888988766433321 555677888888876543
No 264
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=37.33 E-value=68 Score=25.90 Aligned_cols=62 Identities=10% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHhhhCC-CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecccc
Q 045516 431 ADVQNFFSEVA-EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 431 ~~L~~~F~~~G-~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~~ 494 (675)
++|.+-|...| .|..|+-+..+ ++......||++....+...+ ++=..|.++.|.|...+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecCCCC
Confidence 57888888888 47777766666 677788899998877653332 4445678888888766543
No 265
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.20 E-value=32 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=23.7
Q ss_pred HHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC-HHHHHHHHHhCC
Q 045516 539 LEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD-ADSFNKALEMSG 585 (675)
Q Consensus 539 L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~-~e~A~~Al~lng 585 (675)
|.+.|..|..+. |+.+.+. ..++|+++|.|.. -.-...|+.|+.
T Consensus 34 l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 34 LLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp HHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHHHH
Confidence 445555566654 4444443 3678999999974 555666666544
No 266
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=36.46 E-value=1.9e+02 Score=29.69 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=55.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh--hCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCC---------
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFS--EVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGN--------- 483 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~--~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~g--------- 483 (675)
....++|+|||++++..-|..++. .||.+.- +.+-..+-|.+.+.--|....+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~----------------~l~vq~e~a~rl~a~pg~~~~~~lsv~~q~~ 159 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVRM----------------VLMVQKEVAERLLAKPGSKRYSRLSVLAQAF 159 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEE----------------EEEEEHHHHHHHHTSTTSTTCSHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccce----------------EEEEehhhhhhccCCCCCCccchhhhhhhhh
Confidence 356899999999999999999987 3443322 3333456777776533333333
Q ss_pred eeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCC----CcCHHHHHHHHHhhhcc
Q 045516 484 RAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDS----SVGEDQVRASLEEHFGS 545 (675)
Q Consensus 484 r~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~----~~te~~i~~~L~~~F~~ 545 (675)
..|++-+..++..+.|.. ...+..|.|.-.+. ......+..+++.+|..
T Consensus 160 ~~i~~l~~v~~~~F~P~P-------------kVds~vv~l~p~~~~~~~~~~~~~~~~~~~~~F~~ 212 (262)
T PF00398_consen 160 FDIKLLFKVPPSCFYPPP-------------KVDSAVVRLTPKENPLIPPEDMDAFEYFVRQLFSQ 212 (262)
T ss_dssp EEEEEEEEE-GGGEESSS-------------SS-EEEEEEEE-SSCSS-CSHHHHHHHHHHHHHTT
T ss_pred hceeEecccCCccccCCC-------------CCceEEEEEEECCCCCCcccCHHHHHHHHHHHHhC
Confidence 123333333333222221 11145555544333 23566666777888763
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.28 E-value=6.8 Score=42.45 Aligned_cols=77 Identities=8% Similarity=-0.157 Sum_probs=59.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
+.+.|+..||-.+++.+|.-+|..||.|..+.+.+.. .+...-.+||...+. .+..+|. +.-+.+.|..++|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567899999999999999999999999988877655 555677788876653 4666775 777777788888777653
No 268
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=36.06 E-value=97 Score=35.02 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=5.8
Q ss_pred CcccCCeeEE
Q 045516 478 GQMLGNRAIR 487 (675)
Q Consensus 478 g~~~~gr~i~ 487 (675)
|..+.|+.|+
T Consensus 427 GLn~~Gqsir 436 (582)
T PF03276_consen 427 GLNARGQSIR 436 (582)
T ss_pred Cccccccccc
Confidence 5555566665
No 269
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=34.11 E-value=2.7e+02 Score=24.30 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=32.6
Q ss_pred CcCHHHHHHHHHhhhcccCcEEEEE-ecccCCCCCeeeEEEEEeCCHHHHHH
Q 045516 529 SVGEDQVRASLEEHFGSCGEITRIS-VPKDYDTGSVKGIAYLDFTDADSFNK 579 (675)
Q Consensus 529 ~~te~~i~~~L~~~F~~~G~I~~v~-i~~d~~tG~~rG~afV~F~~~e~A~~ 579 (675)
+.+..+|+..|..+|..--....|. |...+..|.+.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 5677899999999887554444443 3344556677777766 555555544
No 270
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=33.70 E-value=75 Score=30.51 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=3.8
Q ss_pred ceEEEcCC
Q 045516 417 KTLFVGNL 424 (675)
Q Consensus 417 ~tlfV~nL 424 (675)
+.++|++|
T Consensus 7 ~V~LiGrL 14 (166)
T PRK06341 7 KVILIGNL 14 (166)
T ss_pred EEEEEEEe
Confidence 34455554
No 271
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=33.67 E-value=64 Score=40.47 Aligned_cols=10 Identities=30% Similarity=0.188 Sum_probs=4.2
Q ss_pred eeEEEEEeCC
Q 045516 564 KGIAYLDFTD 573 (675)
Q Consensus 564 rG~afV~F~~ 573 (675)
+-||.++|.+
T Consensus 1029 k~lAvLClRC 1038 (1191)
T PF05110_consen 1029 KKLAVLCLRC 1038 (1191)
T ss_pred ceeeeehHHH
Confidence 3344444433
No 272
>PHA03264 envelope glycoprotein D; Provisional
Probab=33.40 E-value=2.8e+02 Score=30.07 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=11.3
Q ss_pred cCCCCCeeeEEEEEeCCHHHHHHHH
Q 045516 557 DYDTGSVKGIAYLDFTDADSFNKAL 581 (675)
Q Consensus 557 d~~tG~~rG~afV~F~~~e~A~~Al 581 (675)
++..+......|+.-.-...+.+|+
T Consensus 218 ~ye~g~Vd~l~yL~~yyPQ~~Hka~ 242 (416)
T PHA03264 218 DYEQRKVLRLTYLTQYYPQEAHKAI 242 (416)
T ss_pred hhcccceeeeecccccCCcHHHHHH
Confidence 3333333344444322455566664
No 273
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.83 E-value=3.1e+02 Score=28.88 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=32.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCccc
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQML 481 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~ 481 (675)
.+.|.||||+++...|..++.....+.. +|.+-..|-|++.+..-|...
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~---------------~vlm~QkEvA~Rl~A~pg~k~ 151 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRC---------------AVLMFQKEFALRLLAQPGDEL 151 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCce---------------eeeeehHHHHHHHhcCCCCcc
Confidence 5889999999999999999865333322 233334677777765444433
No 274
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=29.83 E-value=3.3e+02 Score=28.17 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=19.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhh
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSE 439 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~ 439 (675)
..++|+||||.++..-|..++..
T Consensus 106 ~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 106 PLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred cceEEEeCCccchHHHHHHHHhc
Confidence 36889999999999888888864
No 275
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=29.73 E-value=3.1e+02 Score=27.87 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCC
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVA 441 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G 441 (675)
-++|+|||++++..-|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 588999999999999999997444
No 276
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=29.47 E-value=1e+02 Score=26.16 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=31.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEec
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFA 465 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~ 465 (675)
--|||+|++..+.+.-...+...++.=.-+.+..+.+ ..||.|-.+.
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC--CCCEEEEEeC
Confidence 4699999998888776666666554433333333333 6899998774
No 277
>PF14893 PNMA: PNMA
Probab=29.40 E-value=50 Score=35.41 Aligned_cols=56 Identities=11% Similarity=0.255 Sum_probs=39.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCH
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~ 574 (675)
..+.|.|.+||.+|++.+|.+.|+..+...|...-+.-+..++. ..-.++|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccc
Confidence 36889999999999999999999998877775443322222111 144678887653
No 278
>PRK10864 putative methyltransferase; Provisional
Probab=28.96 E-value=1.5e+02 Score=32.01 Aligned_cols=6 Identities=17% Similarity=-0.114 Sum_probs=2.5
Q ss_pred eEEecc
Q 045516 593 LVVDEA 598 (675)
Q Consensus 593 l~V~~a 598 (675)
++|.|.
T Consensus 12 ~~~~~~ 17 (346)
T PRK10864 12 VKVMYV 17 (346)
T ss_pred EEEEEE
Confidence 444443
No 279
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=28.34 E-value=99 Score=30.79 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=4.8
Q ss_pred EEEEEeCCHH
Q 045516 566 IAYLDFTDAD 575 (675)
Q Consensus 566 ~afV~F~~~e 575 (675)
|+|-+|.-.+
T Consensus 144 YGFnEfTW~e 153 (266)
T COG5213 144 YGFNEFTWKE 153 (266)
T ss_pred ccchhhHHHH
Confidence 4555554443
No 280
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=28.26 E-value=3.3e+02 Score=31.30 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEeccc
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKD 557 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d 557 (675)
.+.+.|.+++- +..+-.+--+.+.+||.+..|.|.+.
T Consensus 61 DrvvMVNGvsM---env~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 61 DRVVMVNGVSM---ENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred CeEEEEcCcch---hhhHHHHHHHHHHhhccceeEEeccc
Confidence 46666666542 22222233455677898888887665
No 281
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.84 E-value=2.9e+02 Score=21.42 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=33.3
Q ss_pred CHHHHHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcc
Q 045516 429 EQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQM 480 (675)
Q Consensus 429 te~~L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~ 480 (675)
.-.+|-.+|.+.| .|..+.+..... +++..|.+.+.+.+..+|.-+|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHHCCCE
Confidence 4567888888877 477777644322 477777777777778777755543
No 282
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=27.57 E-value=1.3e+02 Score=26.28 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=5.9
Q ss_pred hCCceeCCeeeEE
Q 045516 583 MSGTEIGGYSLVV 595 (675)
Q Consensus 583 lng~~~~Gr~l~V 595 (675)
|....|.|..|+.
T Consensus 58 le~V~IRGS~IRF 70 (119)
T KOG3172|consen 58 LEQVFIRGSKIRF 70 (119)
T ss_pred eeeEEEecCeEEE
Confidence 3444445544443
No 283
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=26.55 E-value=3e+02 Score=29.46 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=32.2
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcc-cCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGS-CGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~-~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
-..++.+||..+.+.++.. .+.++.. |+ .+|.+..+...+...||+++-+.
T Consensus 187 g~~~~~~l~~~va~r~~~~-a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 187 GISHAANLPPHVAERQAEA-AAALLRKALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred EEEEEccCCHHHHHHHHHH-HHHHHhhccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 3667889998888777654 4555555 43 34444444444677787776654
No 284
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=26.44 E-value=30 Score=37.40 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=49.8
Q ss_pred ceEEEEecCCCCcCH----HHHHHHHHhhhcc--cCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH
Q 045516 518 AHTIFIKGFDSSVGE----DQVRASLEEHFGS--CGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE 582 (675)
Q Consensus 518 ~~~lfV~nLp~~~te----~~i~~~L~~~F~~--~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~ 582 (675)
.+.+|+.+++..... .+..+.+...|.. .+.+..|++.+++.....+|..|++|.....+++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 456666666544322 3344457788877 7889999999998778889999999999999999984
No 285
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.19 E-value=1.1e+02 Score=34.83 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=48.4
Q ss_pred CceEEEcCCCCCCC---HHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeE
Q 045516 416 SKTLFVGNLPFSVE---QADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486 (675)
Q Consensus 416 ~~tlfV~nLp~~~t---e~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i 486 (675)
..-=+||||+.-.. ...|..+=.+||+|..++|-. .=+|...+.+.|+.++..|+..|.+|+.
T Consensus 32 ~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 32 PPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 34557888875443 345555666899999888743 2478889999999999999999999986
No 286
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.67 E-value=3e+02 Score=21.33 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=28.6
Q ss_pred HHhhhcccC-cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCcee
Q 045516 539 LEEHFGSCG-EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEI 588 (675)
Q Consensus 539 L~~~F~~~G-~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~ 588 (675)
+-.+|...| .|.++.+.... . +++..|.+.+.+.+..+|.-+|..+
T Consensus 18 v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 18 VTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCCCEE
Confidence 344554445 67777664432 2 4666777878778888887666543
No 287
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=17 Score=39.50 Aligned_cols=77 Identities=8% Similarity=-0.143 Sum_probs=58.0
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
+...|+..|+...+..+ |+.+|.-||.|..+.+.+..+.|...-++||+.... .+..||+ +.-..+.|..+++.
T Consensus 3 s~~~~l~d~~~~~~~~~----~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQ----NSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKA 77 (572)
T ss_pred chhhhHhhcccccccch----hhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhh
Confidence 34567777888888877 788899999999999988877788888888876653 4555665 66666777777776
Q ss_pred ccc
Q 045516 597 EAK 599 (675)
Q Consensus 597 ~a~ 599 (675)
.+.
T Consensus 78 ~~~ 80 (572)
T KOG4365|consen 78 VSP 80 (572)
T ss_pred cCc
Confidence 664
No 288
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=25.23 E-value=1e+02 Score=26.83 Aligned_cols=48 Identities=25% Similarity=0.187 Sum_probs=29.8
Q ss_pred eEEEcCCCCCCCHHHHHH---HhhhCCCeEEEEE-e--eCCCCCcccEEEEEec
Q 045516 418 TLFVGNLPFSVEQADVQN---FFSEVAEVVDVRL-S--SDADGRFKGYGHVEFA 465 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~---~F~~~G~I~~v~i-~--~~~~g~~kG~afV~F~ 465 (675)
..|+.|||..+-+.++.. +|..++.-..|.+ + ....+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 569999999999888755 5555554444443 1 1225667777766554
No 289
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.60 E-value=4e+02 Score=21.94 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=44.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-------CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCccc
Q 045516 419 LFVGNLPFSVEQADVQNFFSE-------VAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQML 481 (675)
Q Consensus 419 lfV~nLp~~~te~~L~~~F~~-------~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~ 481 (675)
|-.++||..+|.++|..+... +..|.-++-..+. ...+-||+.+=.+.+.+.++.+..|..+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~-d~~k~~Cly~Ap~~eaV~~~~~~aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE-DDGKIFCLYEAPDEEAVREHARRAGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec-CCCeEEEEEECCCHHHHHHHHHHcCCCc
Confidence 667899999999999887654 3334444433332 2347899999999999998887666655
No 290
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=2.3e+02 Score=25.42 Aligned_cols=50 Identities=14% Similarity=0.372 Sum_probs=35.8
Q ss_pred CcCHHHHHHHHHhhhcccCcEEEE-EecccCCCCCeeeEEEEEeCCHHHHHH
Q 045516 529 SVGEDQVRASLEEHFGSCGEITRI-SVPKDYDTGSVKGIAYLDFTDADSFNK 579 (675)
Q Consensus 529 ~~te~~i~~~L~~~F~~~G~I~~v-~i~~d~~tG~~rG~afV~F~~~e~A~~ 579 (675)
+++..+|++.|.++|..--.+..+ .+...+.+|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 577899999999998765544444 45556778899999987 566655543
No 291
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=23.00 E-value=1e+02 Score=26.94 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=3.3
Q ss_pred CCeEEEEE
Q 045516 441 AEVVDVRL 448 (675)
Q Consensus 441 G~I~~v~i 448 (675)
|.|+.|.+
T Consensus 15 GhIVt~Et 22 (119)
T KOG3172|consen 15 GHIVTVET 22 (119)
T ss_pred CcEEEEEe
Confidence 44444433
No 292
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=22.60 E-value=2.2e+02 Score=31.67 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.0
Q ss_pred CeeeEEe
Q 045516 590 GYSLVVD 596 (675)
Q Consensus 590 Gr~l~V~ 596 (675)
+..|.|-
T Consensus 49 ~~~V~IP 55 (421)
T PF04285_consen 49 GEKVSIP 55 (421)
T ss_pred CceEeec
Confidence 3444443
No 293
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=22.21 E-value=1.4e+02 Score=37.55 Aligned_cols=17 Identities=6% Similarity=0.384 Sum_probs=6.7
Q ss_pred EEEEeCC-HHHHHHHHHh
Q 045516 567 AYLDFTD-ADSFNKALEM 583 (675)
Q Consensus 567 afV~F~~-~e~A~~Al~l 583 (675)
+|--|.. .+-+.-||.|
T Consensus 999 ~yTMYseTveLIky~mkl 1016 (1191)
T PF05110_consen 999 PYTMYSETVELIKYIMKL 1016 (1191)
T ss_pred cchhHHHHHHHHHHHHhc
Confidence 4444433 3333334434
No 294
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=21.17 E-value=3.7e+02 Score=20.35 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCH----HHHHHHHH
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASV----EDAHKAIE 475 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~----e~A~~Al~ 475 (675)
||+|.||.-.--...|...+...-.|..+.+-.. .+.+-|.|... +....+|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHH
Confidence 6889999888888999999999988988887643 57788888744 55666665
No 295
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=21.08 E-value=8.4e+02 Score=26.10 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=30.4
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
...++.+||..+.+..+.. .+.++..++...+|.+... ..+...||+++-+.
T Consensus 189 g~~~~~~l~~~va~r~~~~-a~~~L~~~~~~~~i~~~~~-~~~~s~G~~i~L~a 240 (326)
T TIGR03399 189 GIAHAANLPAHVAERMAKA-AREELRKLGLDPEIEIEVL-DKGLGPGSGIVLWA 240 (326)
T ss_pred EEEEEccCCHHHHHHHHHH-HHHHHHhhCCCceEEEEec-cCCCCCcEEEEEEE
Confidence 4667788998887766553 4444555554333333221 44666777776654
No 296
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=20.57 E-value=2.5e+02 Score=30.64 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 045516 655 TPNRPSLAAAGTGKKTTFGD 674 (675)
Q Consensus 655 ~~~r~~~~~~~~G~k~~f~d 674 (675)
++.....+++..|.-.+|++
T Consensus 388 ~~gs~~f~~ss~~s~~~~~~ 407 (420)
T PTZ00473 388 YGGSSTFDGSSRGSSDSFGV 407 (420)
T ss_pred CCCccccCCcccCcccccCc
Confidence 33334444455555555544
No 297
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.41 E-value=1.2e+02 Score=31.49 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=34.0
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCH
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDA 574 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~ 574 (675)
..-|+|+||+.++.-.+|+..|+.+-. ....|.. ..++|-||++|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~---~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC---TPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC---CceeEee------ecCCcceeEecCCc
Confidence 456999999999999998888887611 1122222 23478899999764
No 298
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=20.19 E-value=6.8e+02 Score=26.97 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=29.3
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEE--EecccCCCCCeeeEEEEEeC
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRI--SVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v--~i~~d~~tG~~rG~afV~F~ 572 (675)
...|+.+|+..+.+.++.. .+.++..++.-.+| .+....+.+...||+.+-+.
T Consensus 190 G~~~~~~l~~~va~r~~~~-a~~~L~~~~~dv~i~~~~~~~~~~~~~~G~gi~L~a 244 (341)
T cd00875 190 GVAYSTRVSPSIANRMIDA-ARGVLNPFIPDVYIYTDVRKGDNSGKSPGFGISLVA 244 (341)
T ss_pred EEEEEccCCHHHHHHHHHH-HHHHHHhhCCCceEEEEecccccCCCCCCeEEEEEE
Confidence 4677888998887766554 33444444432222 22222334566777666553
Done!