Query 045516
Match_columns 675
No_of_seqs 599 out of 2761
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 5E-33 1.7E-37 272.7 21.5 178 413-606 10-188 (196)
2 4f02_A Polyadenylate-binding p 100.0 7.2E-33 2.5E-37 276.5 15.1 168 414-603 13-183 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 7.6E-32 2.6E-36 256.5 21.1 164 417-600 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-30 3.9E-35 249.3 20.1 162 415-598 2-168 (168)
5 2qfj_A FBP-interacting repress 100.0 1.3E-30 4.6E-35 259.4 20.6 180 415-605 27-209 (216)
6 1fxl_A Paraneoplastic encephal 100.0 2.2E-30 7.6E-35 246.6 21.2 161 416-598 2-167 (167)
7 2cjk_A Nuclear polyadenylated 100.0 1.7E-31 5.9E-36 254.9 13.0 164 415-601 2-166 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 1.9E-29 6.5E-34 242.2 19.6 162 415-598 2-174 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 5.5E-29 1.9E-33 244.3 21.4 180 415-603 3-196 (198)
10 1fje_B Nucleolin RBD12, protei 100.0 4.1E-30 1.4E-34 247.6 13.0 164 413-601 10-174 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 6.2E-29 2.1E-33 238.3 18.2 157 415-598 3-171 (172)
12 3tyt_A Heterogeneous nuclear r 100.0 3.8E-28 1.3E-32 240.7 19.7 174 415-598 3-204 (205)
13 2ghp_A U4/U6 snRNA-associated 100.0 2.4E-28 8.3E-33 255.2 19.2 172 415-601 116-291 (292)
14 3pgw_A U1-A; protein-RNA compl 100.0 6.4E-28 2.2E-32 250.7 21.0 177 412-599 5-281 (282)
15 3smz_A Protein raver-1, ribonu 100.0 9.6E-28 3.3E-32 249.6 22.0 169 415-603 94-266 (284)
16 2adc_A Polypyrimidine tract-bi 100.0 1.7E-27 5.9E-32 240.2 20.5 176 413-601 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 99.9 1.3E-27 4.5E-32 235.0 16.0 174 415-601 2-197 (198)
18 2ghp_A U4/U6 snRNA-associated 99.9 2.1E-27 7.1E-32 248.1 17.7 161 413-604 38-200 (292)
19 3sde_A Paraspeckle component 1 99.9 5.6E-27 1.9E-31 241.2 20.0 158 413-604 19-182 (261)
20 3smz_A Protein raver-1, ribonu 99.9 8.8E-27 3E-31 242.3 20.8 155 415-603 21-177 (284)
21 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-20 9.7E-25 176.1 15.3 150 445-604 2-153 (158)
22 3pgw_S U1-70K; protein-RNA com 99.8 3.9E-21 1.3E-25 211.2 9.4 86 516-605 100-186 (437)
23 4f25_A Polyadenylate-binding p 99.8 9E-21 3.1E-25 170.0 9.9 108 415-533 4-112 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 2.8E-19 9.5E-24 155.8 11.0 80 414-493 17-98 (99)
25 3q2s_C Cleavage and polyadenyl 99.8 1.3E-19 4.4E-24 182.4 8.7 79 518-600 68-149 (229)
26 3q2s_C Cleavage and polyadenyl 99.8 2.8E-19 9.6E-24 179.9 10.0 80 414-493 66-149 (229)
27 2i2y_A Fusion protein consists 99.8 7.8E-19 2.7E-23 164.8 11.2 137 454-602 10-149 (150)
28 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.5E-18 1.2E-22 161.5 12.0 80 414-493 37-118 (156)
29 3s8s_A Histone-lysine N-methyl 99.7 4.9E-18 1.7E-22 150.8 11.2 79 415-493 5-85 (110)
30 2lxi_A RNA-binding protein 10; 99.7 1.1E-18 3.8E-23 149.6 6.5 80 416-495 1-84 (91)
31 1h2v_Z 20 kDa nuclear CAP bind 99.7 6E-18 2E-22 159.9 12.2 84 516-603 37-121 (156)
32 2dgs_A DAZ-associated protein 99.7 1.5E-17 5.3E-22 144.4 13.0 84 413-496 7-91 (99)
33 2dnh_A Bruno-like 5, RNA bindi 99.7 1.8E-17 6.2E-22 145.6 13.3 85 413-497 12-100 (105)
34 2do4_A Squamous cell carcinoma 99.7 2.1E-17 7E-22 143.9 12.8 83 413-495 14-97 (100)
35 2lkz_A RNA-binding protein 5; 99.7 3.7E-18 1.3E-22 147.3 7.8 80 414-493 7-94 (95)
36 3md1_A Nuclear and cytoplasmic 99.7 1.5E-17 5.2E-22 139.4 11.0 79 416-494 1-81 (83)
37 2dnz_A Probable RNA-binding pr 99.7 2.4E-17 8.1E-22 142.0 12.4 83 414-496 3-87 (95)
38 1whw_A Hypothetical protein ri 99.7 2.6E-17 8.8E-22 143.0 12.5 84 413-496 5-90 (99)
39 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.3E-17 4.5E-22 141.1 10.3 81 414-494 4-86 (87)
40 1s79_A Lupus LA protein; RRM, 99.7 8.8E-18 3E-22 147.3 9.3 80 414-493 9-88 (103)
41 2cq0_A Eukaryotic translation 99.7 1.4E-17 4.8E-22 145.8 10.6 84 413-496 12-97 (103)
42 3s7r_A Heterogeneous nuclear r 99.7 1.9E-17 6.6E-22 140.2 10.9 79 413-491 8-87 (87)
43 1x4h_A RNA-binding protein 28; 99.7 3E-17 1E-21 145.6 12.6 85 412-496 11-103 (111)
44 2dgo_A Cytotoxic granule-assoc 99.7 5E-17 1.7E-21 145.3 13.9 84 413-496 12-97 (115)
45 2cpz_A CUG triplet repeat RNA- 99.7 2.3E-17 8E-22 147.5 11.6 84 413-496 22-107 (115)
46 2dnm_A SRP46 splicing factor; 99.7 1.9E-17 6.5E-22 145.0 10.7 84 412-495 9-94 (103)
47 3p5t_L Cleavage and polyadenyl 99.7 5.2E-18 1.8E-22 144.9 6.8 79 417-495 2-84 (90)
48 1x5t_A Splicing factor 3B subu 99.7 1.7E-17 5.8E-22 143.2 10.1 83 414-496 3-88 (96)
49 1p27_B RNA-binding protein 8A; 99.7 2.6E-17 9.1E-22 144.8 11.4 83 413-495 20-104 (106)
50 1x5u_A Splicing factor 3B subu 99.7 3.4E-17 1.2E-21 143.8 12.0 84 413-496 12-97 (105)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.8E-17 6.1E-22 139.6 9.4 79 414-492 5-85 (85)
52 2hvz_A Splicing factor, argini 99.7 1.2E-17 3.9E-22 145.8 8.5 99 417-527 1-100 (101)
53 3ns6_A Eukaryotic translation 99.7 6E-18 2E-22 147.6 6.6 81 414-494 4-93 (100)
54 2ywk_A Putative RNA-binding pr 99.7 2.1E-17 7.3E-22 142.3 10.0 80 413-492 13-93 (95)
55 1x5s_A Cold-inducible RNA-bind 99.7 3E-17 1E-21 143.3 11.0 84 413-496 9-94 (102)
56 2cph_A RNA binding motif prote 99.7 4.7E-17 1.6E-21 143.4 12.3 84 413-496 12-99 (107)
57 2x1f_A MRNA 3'-END-processing 99.7 2.9E-17 9.9E-22 141.9 10.5 81 416-496 2-84 (96)
58 2cqc_A Arginine/serine-rich sp 99.7 3.7E-17 1.3E-21 140.7 11.2 81 413-493 12-94 (95)
59 2d9p_A Polyadenylate-binding p 99.7 5.1E-17 1.8E-21 142.2 12.2 83 413-496 12-95 (103)
60 2la6_A RNA-binding protein FUS 99.7 4.6E-17 1.6E-21 141.5 11.6 80 413-492 10-99 (99)
61 2e5h_A Zinc finger CCHC-type a 99.7 4.1E-17 1.4E-21 140.2 11.1 80 413-492 13-94 (94)
62 3pgw_S U1-70K; protein-RNA com 99.7 8.4E-17 2.9E-21 176.7 16.5 82 413-494 99-182 (437)
63 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.2E-17 7.6E-22 144.2 9.5 84 413-496 9-94 (102)
64 1wez_A HnRNP H', FTP-3, hetero 99.7 1.9E-17 6.4E-22 145.0 8.8 82 413-495 12-93 (102)
65 2fy1_A RNA-binding motif prote 99.7 6.1E-17 2.1E-21 145.2 12.3 83 414-496 5-88 (116)
66 2jrs_A RNA-binding protein 39; 99.7 4.1E-17 1.4E-21 144.4 11.0 82 413-494 23-106 (108)
67 2cq3_A RNA-binding protein 9; 99.7 9.5E-17 3.3E-21 140.5 13.1 83 413-496 12-95 (103)
68 2do0_A HnRNP M, heterogeneous 99.7 1.2E-16 4.3E-21 142.4 14.1 82 413-494 12-94 (114)
69 2dng_A Eukaryotic translation 99.7 5.2E-17 1.8E-21 142.2 11.2 82 413-495 12-94 (103)
70 2dhg_A TRNA selenocysteine ass 99.7 6.2E-17 2.1E-21 141.9 11.7 84 413-496 6-92 (104)
71 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-16 3.8E-21 140.0 12.9 82 413-495 12-94 (103)
72 1oo0_B CG8781-PA, drosophila Y 99.7 4.6E-17 1.6E-21 144.3 10.5 83 413-495 23-107 (110)
73 1wg5_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 143.5 9.8 82 413-494 12-94 (104)
74 2dgw_A Probable RNA-binding pr 99.7 8.1E-17 2.8E-21 137.6 11.5 81 413-494 7-87 (91)
75 3ulh_A THO complex subunit 4; 99.7 6.7E-17 2.3E-21 142.4 11.3 80 413-492 26-106 (107)
76 2dnn_A RNA-binding protein 12; 99.7 2.7E-17 9.2E-22 145.6 8.6 81 413-494 13-93 (109)
77 2div_A TRNA selenocysteine ass 99.7 5.3E-17 1.8E-21 141.0 10.3 82 413-494 6-94 (99)
78 2cpf_A RNA binding motif prote 99.7 6E-17 2.1E-21 140.3 10.5 82 414-495 3-89 (98)
79 2cq4_A RNA binding motif prote 99.7 1.5E-17 5.3E-22 148.4 6.9 82 414-495 23-105 (114)
80 3ucg_A Polyadenylate-binding p 99.7 5.2E-17 1.8E-21 138.0 9.8 79 416-494 6-85 (89)
81 2cpy_A RNA-binding protein 12; 99.7 2.2E-17 7.4E-22 147.6 7.7 82 413-494 12-94 (114)
82 4fxv_A ELAV-like protein 1; RN 99.7 7.7E-17 2.6E-21 140.3 10.8 79 518-600 19-98 (99)
83 2dh8_A DAZ-associated protein 99.7 5.4E-17 1.8E-21 142.6 9.8 84 413-496 13-97 (105)
84 2dgp_A Bruno-like 4, RNA bindi 99.7 7.3E-17 2.5E-21 141.9 10.7 83 413-495 10-97 (106)
85 3n9u_C Cleavage and polyadenyl 99.7 4.8E-17 1.7E-21 153.6 10.2 80 415-494 54-137 (156)
86 1wi8_A EIF-4B, eukaryotic tran 99.7 7.2E-17 2.5E-21 141.6 10.6 81 414-495 13-95 (104)
87 2dgv_A HnRNP M, heterogeneous 99.7 9.3E-17 3.2E-21 137.4 10.9 82 413-495 5-87 (92)
88 2cpe_A RNA-binding protein EWS 99.7 7.3E-17 2.5E-21 143.7 10.6 84 413-496 12-105 (113)
89 3ex7_B RNA-binding protein 8A; 99.7 7.5E-17 2.6E-21 146.5 10.8 86 412-497 18-105 (126)
90 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-16 4.7E-21 147.4 12.6 86 411-496 37-124 (139)
91 2db1_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 147.4 8.2 82 413-494 14-98 (118)
92 2dgx_A KIAA0430 protein; RRM d 99.7 9.7E-17 3.3E-21 138.7 10.7 80 414-495 7-91 (96)
93 2mss_A Protein (musashi1); RNA 99.7 3E-17 1E-21 134.9 7.0 74 418-491 1-75 (75)
94 2cqd_A RNA-binding region cont 99.7 1.7E-16 5.9E-21 142.0 12.6 82 413-495 14-97 (116)
95 1x4b_A Heterogeneous nuclear r 99.7 7.7E-17 2.6E-21 144.3 10.3 82 415-496 26-108 (116)
96 2khc_A Testis-specific RNP-typ 99.7 6E-17 2.1E-21 145.4 9.5 80 413-492 37-118 (118)
97 2rs2_A Musashi-1, RNA-binding 99.7 1E-16 3.5E-21 142.0 10.6 83 413-495 22-105 (109)
98 1sjq_A Polypyrimidine tract-bi 99.7 7.8E-17 2.7E-21 140.9 9.3 78 414-496 14-94 (105)
99 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-16 4.9E-21 142.3 11.2 80 414-495 6-86 (115)
100 2kt5_A RNA and export factor-b 99.7 2E-16 6.7E-21 143.5 12.2 86 412-497 31-117 (124)
101 4a8x_A RNA-binding protein wit 99.7 7.8E-17 2.7E-21 136.5 9.0 80 415-494 3-85 (88)
102 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.5E-16 5E-21 151.8 11.9 139 462-604 11-155 (165)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.2E-17 1.1E-21 142.9 6.6 81 413-494 16-98 (100)
104 2cqg_A TDP-43, TAR DNA-binding 99.7 2.5E-16 8.5E-21 137.8 12.4 83 413-496 12-95 (103)
105 2kxn_B Transformer-2 protein h 99.7 1.1E-16 3.8E-21 146.3 10.3 82 413-494 43-126 (129)
106 1x4a_A Splicing factor, argini 99.7 2.9E-16 9.9E-21 138.9 12.7 81 413-495 19-100 (109)
107 2nlw_A Eukaryotic translation 99.7 9.3E-17 3.2E-21 141.3 9.5 82 413-495 12-101 (105)
108 1p1t_A Cleavage stimulation fa 99.7 7E-17 2.4E-21 141.5 8.5 81 415-495 7-89 (104)
109 2hgl_A HNRPF protein, heteroge 99.7 5E-17 1.7E-21 149.7 7.9 82 413-494 41-125 (136)
110 1x4d_A Matrin 3; structural ge 99.7 8.2E-17 2.8E-21 140.5 8.8 78 413-495 12-93 (102)
111 1x4e_A RNA binding motif, sing 99.7 3.2E-17 1.1E-21 138.2 5.9 79 414-492 3-83 (85)
112 2jwn_A Embryonic polyadenylate 99.7 1.2E-16 4.2E-21 144.7 10.0 81 415-495 35-116 (124)
113 2dnz_A Probable RNA-binding pr 99.7 2.8E-16 9.7E-21 135.2 11.8 85 517-605 4-89 (95)
114 3ex7_B RNA-binding protein 8A; 99.7 1.6E-16 5.3E-21 144.4 10.6 85 516-604 20-105 (126)
115 2m2b_A RNA-binding protein 10; 99.7 6.7E-17 2.3E-21 148.1 8.1 82 413-495 20-109 (131)
116 2cqp_A RNA-binding protein 12; 99.7 8.4E-17 2.9E-21 139.4 8.3 81 414-494 13-95 (98)
117 2dha_A FLJ20171 protein; RRM d 99.7 4.9E-17 1.7E-21 147.1 7.0 80 414-493 21-104 (123)
118 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-16 6.1E-21 151.2 11.1 85 412-496 68-154 (165)
119 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-16 4.6E-21 133.4 8.7 73 415-492 6-79 (89)
120 1u6f_A Tcubp1, RNA-binding pro 99.7 3E-16 1E-20 145.1 12.0 85 516-604 40-125 (139)
121 2ek1_A RNA-binding protein 12; 99.7 5.6E-17 1.9E-21 139.6 6.4 78 415-492 14-93 (95)
122 3r27_A HnRNP L, heterogeneous 99.7 2.1E-16 7.1E-21 136.8 10.0 76 414-494 19-97 (100)
123 2lmi_A GRSF-1, G-rich sequence 99.7 3.9E-17 1.3E-21 144.2 5.5 82 413-494 8-92 (107)
124 1x5o_A RNA binding motif, sing 99.7 4.4E-16 1.5E-20 138.8 12.1 82 413-494 22-112 (114)
125 1whw_A Hypothetical protein ri 99.7 7.3E-16 2.5E-20 133.7 12.9 86 516-605 6-92 (99)
126 2dgs_A DAZ-associated protein 99.7 7.3E-16 2.5E-20 133.8 12.7 86 516-605 8-93 (99)
127 2err_A Ataxin-2-binding protei 99.7 1.7E-16 6E-21 140.5 8.9 81 413-494 26-107 (109)
128 2fc9_A NCL protein; structure 99.7 3E-16 1E-20 136.8 10.2 80 413-495 12-92 (101)
129 1wex_A Hypothetical protein (r 99.7 5.6E-16 1.9E-20 136.0 11.8 79 414-497 13-94 (104)
130 2dis_A Unnamed protein product 99.7 3.7E-16 1.3E-20 138.1 10.7 83 414-496 6-94 (109)
131 2dnq_A RNA-binding protein 4B; 99.7 6.7E-16 2.3E-20 131.6 11.8 77 413-496 5-82 (90)
132 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.8E-17 3.3E-21 132.4 6.3 74 417-491 1-76 (77)
133 2cq1_A PTB-like protein L; RRM 99.7 3.8E-16 1.3E-20 136.2 10.4 78 414-496 13-93 (101)
134 2cq0_A Eukaryotic translation 99.7 1.3E-15 4.3E-20 133.3 13.7 86 516-605 13-99 (103)
135 1iqt_A AUF1, heterogeneous nuc 99.6 6.8E-17 2.3E-21 132.7 5.2 74 418-491 1-75 (75)
136 2a3j_A U1 small nuclear ribonu 99.6 3.2E-16 1.1E-20 142.5 10.2 81 413-495 26-111 (127)
137 2krb_A Eukaryotic translation 99.6 1.2E-16 4E-21 133.6 6.6 72 416-488 1-80 (81)
138 1wel_A RNA-binding protein 12; 99.6 1.1E-16 3.7E-21 145.3 6.8 82 413-494 22-104 (124)
139 2ad9_A Polypyrimidine tract-bi 99.6 4.6E-16 1.6E-20 139.4 10.6 79 414-497 29-110 (119)
140 1x4c_A Splicing factor, argini 99.6 8.2E-16 2.8E-20 135.9 12.1 78 413-496 12-95 (108)
141 2hgm_A HNRPF protein, heteroge 99.6 1.3E-16 4.5E-21 144.6 7.1 81 413-494 39-121 (126)
142 1x5t_A Splicing factor 3B subu 99.6 4.9E-16 1.7E-20 134.0 10.4 85 517-605 4-90 (96)
143 2kn4_A Immunoglobulin G-bindin 99.6 5.4E-16 1.8E-20 146.6 11.6 83 413-495 67-151 (158)
144 2dng_A Eukaryotic translation 99.6 1.5E-15 5.1E-20 132.8 13.5 85 516-605 13-97 (103)
145 2dgt_A RNA-binding protein 30; 99.6 9.9E-16 3.4E-20 131.1 12.1 77 413-496 7-84 (92)
146 3s8s_A Histone-lysine N-methyl 99.6 7.7E-16 2.6E-20 136.6 11.8 82 516-601 4-86 (110)
147 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-15 4.4E-20 133.5 13.0 85 516-605 13-98 (104)
148 2lxi_A RNA-binding protein 10; 99.6 1.8E-16 6.2E-21 135.7 7.3 83 518-604 1-86 (91)
149 2cqd_A RNA-binding region cont 99.6 2.4E-15 8.3E-20 134.5 15.0 83 515-602 14-97 (116)
150 2ki2_A SS-DNA binding protein 99.6 6.4E-17 2.2E-21 137.9 4.3 78 417-495 2-81 (90)
151 2cpi_A CCR4-NOT transcription 99.6 2.3E-16 7.8E-21 140.2 8.0 83 413-495 12-102 (111)
152 1x5u_A Splicing factor 3B subu 99.6 1.2E-15 4E-20 133.9 12.3 86 516-605 13-99 (105)
153 2dnp_A RNA-binding protein 14; 99.6 9E-16 3.1E-20 130.8 10.8 76 413-495 6-82 (90)
154 2lea_A Serine/arginine-rich sp 99.6 2.3E-16 7.7E-21 145.4 7.4 83 413-495 44-128 (135)
155 2lea_A Serine/arginine-rich sp 99.6 2.7E-16 9.3E-21 144.9 7.9 124 458-604 5-130 (135)
156 2dgo_A Cytotoxic granule-assoc 99.6 4.6E-15 1.6E-19 132.4 15.7 86 516-605 13-99 (115)
157 2dgx_A KIAA0430 protein; RRM d 99.6 1.6E-15 5.3E-20 131.1 12.1 85 517-604 8-93 (96)
158 1x5s_A Cold-inducible RNA-bind 99.6 7.7E-16 2.6E-20 134.3 10.3 86 516-605 10-96 (102)
159 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7E-16 2.4E-20 142.5 10.5 79 413-491 60-140 (140)
160 2hgn_A Heterogeneous nuclear r 99.6 8.8E-17 3E-21 148.5 4.3 123 457-602 1-124 (139)
161 2e5j_A Methenyltetrahydrofolat 99.6 8.6E-16 2.9E-20 132.9 10.2 78 413-494 16-94 (97)
162 2hgn_A Heterogeneous nuclear r 99.6 9.1E-17 3.1E-21 148.4 4.3 82 413-495 43-124 (139)
163 2cqb_A Peptidyl-prolyl CIS-tra 99.6 9.8E-16 3.3E-20 133.7 10.6 86 516-605 10-96 (102)
164 2cpj_A Non-POU domain-containi 99.6 8.5E-16 2.9E-20 133.4 10.2 78 413-495 12-90 (99)
165 2dgu_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 132.3 12.4 77 414-497 9-86 (103)
166 1why_A Hypothetical protein ri 99.6 1E-15 3.6E-20 132.3 10.4 78 413-495 14-94 (97)
167 2ytc_A PRE-mRNA-splicing facto 99.6 9.6E-16 3.3E-20 129.0 9.8 75 413-492 9-85 (85)
168 2cpz_A CUG triplet repeat RNA- 99.6 1.8E-15 6.2E-20 135.1 12.1 86 516-605 23-109 (115)
169 2dnm_A SRP46 splicing factor; 99.6 1.5E-15 5.1E-20 132.8 11.2 85 516-604 11-96 (103)
170 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-15 3.9E-20 135.1 10.5 77 415-496 24-101 (109)
171 2jvr_A Nucleolar protein 3; RN 99.6 5E-16 1.7E-20 137.8 8.1 78 414-494 26-105 (111)
172 1x4b_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 136.4 10.7 84 518-605 27-110 (116)
173 2la4_A Nuclear and cytoplasmic 99.6 6.8E-16 2.3E-20 134.5 8.6 74 415-493 26-100 (101)
174 2xnq_A Nuclear polyadenylated 99.6 1.3E-15 4.6E-20 131.8 10.4 75 413-494 19-95 (97)
175 2cph_A RNA binding motif prote 99.6 2.4E-15 8.4E-20 132.3 12.2 86 516-605 13-101 (107)
176 1nu4_A U1A RNA binding domain; 99.6 3.6E-16 1.2E-20 135.1 6.7 81 413-495 5-90 (97)
177 2fy1_A RNA-binding motif prote 99.6 2.3E-15 7.7E-20 134.9 12.1 82 517-603 6-88 (116)
178 2cpx_A Hypothetical protein FL 99.6 1.4E-15 4.8E-20 135.7 10.7 80 414-496 23-107 (115)
179 3bs9_A Nucleolysin TIA-1 isofo 99.6 2E-15 6.8E-20 127.5 11.1 81 517-601 5-86 (87)
180 2cpd_A Apobec-1 stimulating pr 99.6 3.4E-15 1.2E-19 129.6 12.8 76 413-495 12-90 (99)
181 1x4h_A RNA-binding protein 28; 99.6 3.1E-15 1.1E-19 132.5 12.8 86 516-605 13-105 (111)
182 1x4f_A Matrin 3; structural ge 99.6 4.6E-16 1.6E-20 137.8 7.2 77 414-495 23-103 (112)
183 2cpf_A RNA binding motif prote 99.6 1.9E-15 6.4E-20 130.9 10.9 85 517-605 4-92 (98)
184 1fj7_A Nucleolin RBD1, protein 99.6 1.7E-16 5.7E-21 138.4 4.2 82 413-495 14-96 (101)
185 2cpe_A RNA-binding protein EWS 99.6 2.2E-15 7.5E-20 134.1 11.4 86 516-605 13-107 (113)
186 3md1_A Nuclear and cytoplasmic 99.6 3.1E-15 1E-19 125.2 11.6 81 518-602 1-82 (83)
187 2xs2_A Deleted in azoospermia- 99.6 4.5E-16 1.5E-20 135.9 6.8 81 415-496 8-88 (102)
188 1whx_A Hypothetical protein ri 99.6 7.9E-16 2.7E-20 136.8 8.4 75 415-494 9-84 (111)
189 2do4_A Squamous cell carcinoma 99.6 4.1E-15 1.4E-19 129.3 12.7 84 516-604 15-99 (100)
190 2fc8_A NCL protein; structure 99.6 2.2E-15 7.7E-20 131.4 11.1 81 413-496 12-94 (102)
191 2dh8_A DAZ-associated protein 99.6 2.5E-15 8.6E-20 131.8 11.4 86 516-605 14-99 (105)
192 2d9p_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 130.0 12.6 83 517-605 14-97 (103)
193 1wez_A HnRNP H', FTP-3, hetero 99.6 1.5E-15 5.1E-20 132.9 9.6 81 516-602 13-93 (102)
194 2kvi_A Nuclear polyadenylated 99.6 1E-15 3.5E-20 132.2 8.5 76 413-495 7-84 (96)
195 1x4a_A Splicing factor, argini 99.6 7E-15 2.4E-19 130.0 13.5 83 515-604 19-102 (109)
196 2dhg_A TRNA selenocysteine ass 99.6 3.6E-15 1.2E-19 130.6 11.4 84 517-605 8-94 (104)
197 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.5E-15 1.2E-19 125.4 10.7 80 516-599 5-85 (85)
198 2x1f_A MRNA 3'-END-processing 99.6 3.7E-15 1.3E-19 128.6 11.0 82 518-603 2-84 (96)
199 2lkz_A RNA-binding protein 5; 99.6 1.3E-15 4.6E-20 131.3 8.1 79 518-600 9-94 (95)
200 2dgp_A Bruno-like 4, RNA bindi 99.6 2.9E-15 1E-19 131.6 10.4 85 516-604 11-99 (106)
201 3ns6_A Eukaryotic translation 99.6 1E-15 3.6E-20 133.3 7.2 82 518-603 6-95 (100)
202 2jvo_A Nucleolar protein 3; nu 99.6 2.4E-15 8.3E-20 132.9 9.7 76 413-495 28-104 (108)
203 2f3j_A RNA and export factor b 99.6 2.2E-15 7.4E-20 145.3 10.2 83 413-495 85-168 (177)
204 2cqh_A IGF-II mRNA-binding pro 99.6 2.4E-15 8.1E-20 128.9 9.2 77 413-495 5-84 (93)
205 2dnh_A Bruno-like 5, RNA bindi 99.6 7.7E-15 2.6E-19 128.6 12.6 85 516-605 13-101 (105)
206 1wf1_A RNA-binding protein RAL 99.6 4.2E-15 1.4E-19 131.7 10.8 75 414-495 25-101 (110)
207 2cq2_A Hypothetical protein LO 99.6 2.3E-15 8E-20 133.4 9.0 78 414-496 23-108 (114)
208 1fjc_A Nucleolin RBD2, protein 99.6 9.9E-16 3.4E-20 132.1 6.3 79 413-495 13-92 (96)
209 2a3j_A U1 small nuclear ribonu 99.6 2.9E-15 9.9E-20 136.2 9.6 85 516-603 27-112 (127)
210 2cqg_A TDP-43, TAR DNA-binding 99.6 1.4E-14 4.8E-19 126.6 13.5 85 516-605 13-97 (103)
211 2cqc_A Arginine/serine-rich sp 99.6 7.9E-15 2.7E-19 126.0 11.7 82 515-600 12-94 (95)
212 2lcw_A RNA-binding protein FUS 99.4 1.1E-16 3.9E-21 143.3 0.0 83 414-496 5-97 (116)
213 2e5g_A U6 snRNA-specific termi 99.6 5.6E-15 1.9E-19 127.0 10.6 77 414-495 6-83 (94)
214 1oo0_B CG8781-PA, drosophila Y 99.6 7.4E-15 2.5E-19 130.0 11.7 84 516-603 24-108 (110)
215 2i2y_A Fusion protein consists 99.6 3.5E-15 1.2E-19 139.9 10.1 78 413-494 70-148 (150)
216 2e5h_A Zinc finger CCHC-type a 99.6 8.1E-15 2.8E-19 125.8 11.4 80 516-599 14-94 (94)
217 1x5p_A Negative elongation fac 99.6 1E-14 3.5E-19 126.1 12.0 77 413-496 12-89 (97)
218 2cq4_A RNA binding motif prote 99.6 2E-15 6.8E-20 134.6 7.7 83 518-604 25-107 (114)
219 1p27_B RNA-binding protein 8A; 99.6 6.5E-15 2.2E-19 129.4 10.9 84 516-603 21-105 (106)
220 2jrs_A RNA-binding protein 39; 99.6 8.1E-15 2.8E-19 129.5 11.5 83 516-602 24-107 (108)
221 2jwn_A Embryonic polyadenylate 99.6 6.2E-15 2.1E-19 133.4 11.0 82 518-603 36-117 (124)
222 3s7r_A Heterogeneous nuclear r 99.6 8.4E-15 2.9E-19 123.8 11.0 78 517-598 10-87 (87)
223 2div_A TRNA selenocysteine ass 99.6 7.3E-15 2.5E-19 127.4 10.5 84 516-603 7-96 (99)
224 2do0_A HnRNP M, heterogeneous 99.6 3.4E-14 1.2E-18 126.5 15.1 83 516-603 13-96 (114)
225 2diu_A KIAA0430 protein; struc 99.6 6.5E-15 2.2E-19 124.4 9.6 73 415-496 7-86 (96)
226 2fc8_A NCL protein; structure 99.6 1.3E-14 4.5E-19 126.5 12.0 82 516-604 13-95 (102)
227 2cpi_A CCR4-NOT transcription 99.6 1.5E-14 5.1E-19 128.4 12.5 87 516-603 13-103 (111)
228 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.9E-14 6.4E-19 125.8 12.8 84 516-605 13-97 (103)
229 1wg1_A KIAA1579 protein, homol 99.6 4E-15 1.4E-19 126.3 8.2 75 414-494 3-78 (88)
230 2cq3_A RNA-binding protein 9; 99.6 2.5E-14 8.6E-19 124.9 13.6 84 516-605 13-97 (103)
231 2lcw_A RNA-binding protein FUS 99.3 1.9E-16 6.6E-21 141.8 0.0 84 517-604 6-98 (116)
232 4f25_A Polyadenylate-binding p 99.6 8.1E-15 2.8E-19 131.0 10.6 81 518-604 5-86 (115)
233 3ucg_A Polyadenylate-binding p 99.6 1E-14 3.5E-19 123.7 10.3 80 518-601 6-85 (89)
234 3egn_A RNA-binding protein 40; 99.6 2.1E-15 7.4E-20 140.1 6.6 81 413-495 42-131 (143)
235 2dgu_A Heterogeneous nuclear r 99.6 2E-14 7E-19 125.6 12.4 78 516-605 9-87 (103)
236 3p5t_L Cleavage and polyadenyl 99.6 2.3E-15 7.7E-20 128.4 6.0 81 519-603 2-85 (90)
237 2dgv_A HnRNP M, heterogeneous 99.6 1.4E-14 4.7E-19 123.8 10.7 83 516-604 6-89 (92)
238 4a8x_A RNA-binding protein wit 99.6 1.1E-14 3.7E-19 123.2 9.8 81 518-602 4-86 (88)
239 2e44_A Insulin-like growth fac 99.6 6.9E-15 2.3E-19 126.8 8.7 79 413-494 12-92 (96)
240 3beg_B Splicing factor, argini 99.6 5.2E-15 1.8E-19 132.3 8.2 75 414-494 14-94 (115)
241 2cpy_A RNA-binding protein 12; 99.6 9.1E-15 3.1E-19 130.5 9.6 82 516-602 13-95 (114)
242 2la6_A RNA-binding protein FUS 99.6 1.7E-14 5.8E-19 125.2 11.0 80 516-599 11-99 (99)
243 2fc9_A NCL protein; structure 99.6 3E-14 1E-18 124.0 12.5 80 516-603 13-93 (101)
244 2j8a_A Histone-lysine N-methyl 99.6 5.2E-15 1.8E-19 132.0 7.7 76 417-492 3-94 (136)
245 1x4c_A Splicing factor, argini 99.6 3.7E-14 1.3E-18 125.2 13.2 77 516-603 13-95 (108)
246 2kxn_B Transformer-2 protein h 99.6 1.1E-14 3.6E-19 133.1 9.9 85 515-603 43-128 (129)
247 2cqp_A RNA-binding protein 12; 99.6 1.2E-14 4.1E-19 125.8 9.7 83 516-602 13-96 (98)
248 1sjr_A Polypyrimidine tract-bi 99.6 2.1E-14 7.1E-19 135.1 12.1 80 413-495 43-125 (164)
249 2khc_A Testis-specific RNP-typ 99.5 1.5E-14 5.2E-19 129.7 10.7 81 515-599 37-118 (118)
250 2rs2_A Musashi-1, RNA-binding 99.5 1.5E-14 5.2E-19 128.0 10.5 84 517-604 24-107 (109)
251 1s79_A Lupus LA protein; RRM, 99.5 8E-15 2.8E-19 128.4 8.3 79 517-600 10-88 (103)
252 3md3_A Nuclear and cytoplasmic 99.5 2.4E-14 8E-19 135.2 12.1 80 413-492 84-165 (166)
253 3ulh_A THO complex subunit 4; 99.5 2.7E-14 9.1E-19 125.6 11.4 80 515-599 26-106 (107)
254 2ywk_A Putative RNA-binding pr 99.5 2.7E-14 9.2E-19 122.7 11.0 80 516-600 14-94 (95)
255 2qfj_A FBP-interacting repress 99.5 2.3E-14 8E-19 141.7 12.2 83 414-496 123-207 (216)
256 2j76_E EIF-4B, EIF4B, eukaryot 99.5 8.1E-15 2.8E-19 127.6 7.8 82 516-602 17-99 (100)
257 2voo_A Lupus LA protein; RNA-b 99.5 1.5E-14 5.2E-19 141.4 10.5 79 415-493 108-186 (193)
258 1wg5_A Heterogeneous nuclear r 99.5 3.8E-14 1.3E-18 124.3 12.0 82 517-603 14-96 (104)
259 2dgw_A Probable RNA-binding pr 99.5 3E-14 1E-18 121.5 11.0 81 517-603 9-89 (91)
260 3d2w_A TAR DNA-binding protein 99.5 1.4E-14 4.6E-19 123.4 8.7 75 414-495 9-85 (89)
261 2cjk_A Nuclear polyadenylated 99.5 6.9E-15 2.3E-19 139.5 7.7 80 415-494 86-166 (167)
262 2hzc_A Splicing factor U2AF 65 99.5 9E-15 3.1E-19 123.5 7.5 72 414-490 4-86 (87)
263 3zzy_A Polypyrimidine tract-bi 99.5 2.5E-14 8.5E-19 129.7 10.9 78 414-495 26-107 (130)
264 1nu4_A U1A RNA binding domain; 99.5 1.4E-14 4.9E-19 125.0 8.9 85 516-603 6-91 (97)
265 2mss_A Protein (musashi1); RNA 99.5 8E-15 2.7E-19 120.3 6.9 75 520-598 1-75 (75)
266 3n9u_C Cleavage and polyadenyl 99.5 1.6E-14 5.4E-19 136.3 9.9 81 517-601 54-137 (156)
267 2dnq_A RNA-binding protein 4B; 99.5 3.7E-14 1.3E-18 120.7 11.2 78 516-605 6-84 (90)
268 2m2b_A RNA-binding protein 10; 99.5 1E-14 3.4E-19 133.5 8.0 83 516-603 21-110 (131)
269 1l3k_A Heterogeneous nuclear r 99.5 2.1E-14 7.2E-19 139.8 10.7 84 414-497 102-186 (196)
270 1p1t_A Cleavage stimulation fa 99.5 1.3E-14 4.5E-19 126.9 7.9 83 518-604 8-91 (104)
271 2diu_A KIAA0430 protein; struc 99.5 2.8E-14 9.5E-19 120.5 9.4 79 517-605 7-88 (96)
272 2dis_A Unnamed protein product 99.5 5.5E-14 1.9E-18 124.1 11.9 84 517-604 7-95 (109)
273 2cpx_A Hypothetical protein FL 99.5 9.7E-15 3.3E-19 130.2 7.1 87 515-605 22-109 (115)
274 2ek1_A RNA-binding protein 12; 99.5 1.5E-14 5.1E-19 124.3 8.0 80 517-600 14-94 (95)
275 1x4e_A RNA binding motif, sing 99.5 1E-14 3.6E-19 122.6 6.9 79 517-599 4-83 (85)
276 2dnl_A Cytoplasmic polyadenyla 99.5 3.1E-14 1.1E-18 127.0 10.3 76 413-491 5-85 (114)
277 1x4d_A Matrin 3; structural ge 99.5 3.8E-14 1.3E-18 123.6 10.3 79 516-604 13-95 (102)
278 2g4b_A Splicing factor U2AF 65 99.5 2.3E-14 8E-19 136.5 9.5 78 414-491 92-171 (172)
279 1wf0_A TDP-43, TAR DNA-binding 99.5 1.1E-14 3.9E-19 123.4 6.4 77 414-495 3-79 (88)
280 2e5i_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 127.0 11.1 76 415-495 24-103 (124)
281 4f02_A Polyadenylate-binding p 99.5 2.2E-14 7.5E-19 142.4 9.5 79 415-494 102-181 (213)
282 1wf1_A RNA-binding protein RAL 99.5 3.6E-14 1.2E-18 125.6 9.8 75 517-603 26-102 (110)
283 1sjq_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 123.9 9.5 80 515-604 13-95 (105)
284 2hgl_A HNRPF protein, heteroge 99.5 1.9E-14 6.5E-19 132.4 7.7 80 517-601 43-125 (136)
285 2dgt_A RNA-binding protein 30; 99.5 1.1E-13 3.8E-18 118.3 11.8 78 516-605 8-86 (92)
286 2yh0_A Splicing factor U2AF 65 99.5 5.7E-14 1.9E-18 137.0 11.3 82 414-495 112-195 (198)
287 2ki2_A SS-DNA binding protein 99.5 1.5E-14 5.1E-19 123.1 6.2 80 519-603 2-82 (90)
288 2cq1_A PTB-like protein L; RRM 99.5 1.6E-13 5.5E-18 119.5 12.8 80 516-605 13-95 (101)
289 2db1_A Heterogeneous nuclear r 99.5 4.4E-14 1.5E-18 126.9 9.3 81 517-602 16-99 (118)
290 3nmr_A Cugbp ELAV-like family 99.5 5.1E-14 1.7E-18 134.3 10.3 78 414-491 93-174 (175)
291 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.3E-13 4.4E-18 127.2 12.7 81 514-598 59-140 (140)
292 3r27_A HnRNP L, heterogeneous 99.5 5E-14 1.7E-18 121.8 9.2 78 514-601 17-97 (100)
293 2dnn_A RNA-binding protein 12; 99.5 2.1E-14 7.1E-19 127.0 6.9 79 518-602 16-94 (109)
294 2pe8_A Splicing factor 45; RRM 99.5 8E-14 2.8E-18 122.4 10.4 79 415-493 7-93 (105)
295 1x4g_A Nucleolysin TIAR; struc 99.5 1.1E-13 3.7E-18 122.3 11.2 80 516-605 23-103 (109)
296 1why_A Hypothetical protein ri 99.5 1.1E-13 3.9E-18 119.4 11.1 79 515-603 14-95 (97)
297 2bz2_A Negative elongation fac 99.5 5.5E-14 1.9E-18 126.8 9.4 76 413-495 36-112 (121)
298 2cpj_A Non-POU domain-containi 99.5 9.4E-14 3.2E-18 120.4 10.6 80 516-605 13-93 (99)
299 2kt5_A RNA and export factor-b 99.5 1.4E-13 4.7E-18 124.6 12.1 85 515-604 32-117 (124)
300 3beg_B Splicing factor, argini 99.5 4.7E-14 1.6E-18 126.0 8.8 73 517-600 15-93 (115)
301 2nlw_A Eukaryotic translation 99.5 7.9E-14 2.7E-18 122.4 10.0 84 518-603 15-102 (105)
302 1iqt_A AUF1, heterogeneous nuc 99.5 1.9E-14 6.6E-19 117.9 5.2 75 520-598 1-75 (75)
303 2hvz_A Splicing factor, argini 99.5 6.5E-14 2.2E-18 121.9 8.9 76 519-603 1-77 (101)
304 2cpd_A Apobec-1 stimulating pr 99.5 2.1E-13 7.3E-18 118.2 12.1 76 516-603 13-91 (99)
305 1wex_A Hypothetical protein (r 99.5 1.6E-13 5.3E-18 120.3 11.1 80 515-604 12-94 (104)
306 1x5o_A RNA binding motif, sing 99.5 1.2E-13 4.2E-18 122.9 10.6 81 516-601 23-112 (114)
307 1fj7_A Nucleolin RBD1, protein 99.5 1.9E-14 6.5E-19 125.3 5.1 83 517-604 16-98 (101)
308 1b7f_A Protein (SXL-lethal pro 99.5 1E-13 3.5E-18 131.4 10.6 78 414-491 87-168 (168)
309 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.9E-14 1E-18 117.4 5.9 75 519-598 1-76 (77)
310 1wel_A RNA-binding protein 12; 99.5 2.5E-14 8.5E-19 129.6 5.5 82 517-602 24-105 (124)
311 2kvi_A Nuclear polyadenylated 99.5 6.4E-14 2.2E-18 120.9 7.8 76 516-603 8-85 (96)
312 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-13 5.6E-18 114.7 9.4 73 517-599 6-79 (89)
313 1fxl_A Paraneoplastic encephal 99.5 1.7E-13 5.6E-18 129.5 10.6 78 414-491 86-167 (167)
314 2cqh_A IGF-II mRNA-binding pro 99.5 9.9E-14 3.4E-18 118.8 8.2 77 517-604 7-86 (93)
315 2krb_A Eukaryotic translation 99.5 7.4E-14 2.5E-18 116.4 7.2 76 519-596 2-81 (81)
316 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-13 3.7E-18 119.2 8.3 80 516-604 14-94 (96)
317 2dnp_A RNA-binding protein 14; 99.5 2.9E-13 9.8E-18 115.2 10.9 77 516-604 7-84 (90)
318 2err_A Ataxin-2-binding protei 99.5 1.4E-13 4.9E-18 121.7 9.2 80 516-601 27-107 (109)
319 2e5g_A U6 snRNA-specific termi 99.5 4.4E-13 1.5E-17 115.0 11.9 78 518-604 8-85 (94)
320 1x4f_A Matrin 3; structural ge 99.5 8.9E-14 3E-18 123.1 7.6 81 515-605 22-106 (112)
321 2lmi_A GRSF-1, G-rich sequence 99.5 4.7E-14 1.6E-18 124.3 5.7 81 517-602 10-93 (107)
322 2ad9_A Polypyrimidine tract-bi 99.4 1.3E-13 4.4E-18 123.4 8.4 79 516-604 29-110 (119)
323 2jvr_A Nucleolar protein 3; RN 99.4 1.5E-13 5.2E-18 121.8 8.7 77 518-602 28-106 (111)
324 2xs2_A Deleted in azoospermia- 99.4 1.9E-13 6.4E-18 119.1 8.5 82 517-604 8-89 (102)
325 2ytc_A PRE-mRNA-splicing facto 99.4 4.4E-13 1.5E-17 112.5 10.3 74 516-599 10-85 (85)
326 2dha_A FLJ20171 protein; RRM d 99.4 8.8E-14 3E-18 125.6 6.0 80 517-601 22-105 (123)
327 2hgm_A HNRPF protein, heteroge 99.4 1.9E-13 6.5E-18 123.8 8.2 79 517-601 41-121 (126)
328 1fje_B Nucleolin RBD12, protei 99.4 1.9E-13 6.6E-18 130.6 8.7 78 413-494 96-174 (175)
329 3lqv_A PRE-mRNA branch site pr 99.4 2.5E-13 8.6E-18 121.0 8.6 81 517-604 7-88 (115)
330 1whx_A Hypothetical protein ri 99.4 2.5E-13 8.6E-18 120.5 8.5 74 518-601 10-84 (111)
331 2la4_A Nuclear and cytoplasmic 99.4 2.6E-13 8.9E-18 118.0 8.3 75 517-601 26-101 (101)
332 1x5p_A Negative elongation fac 99.4 1.4E-12 4.7E-17 112.6 12.7 77 517-605 14-91 (97)
333 3egn_A RNA-binding protein 40; 99.4 1.1E-13 3.7E-18 128.6 6.0 85 516-604 43-133 (143)
334 3u1l_A PRE-mRNA-splicing facto 99.4 2.2E-13 7.7E-18 136.5 8.5 78 413-495 131-230 (240)
335 2jvo_A Nucleolar protein 3; nu 99.4 4.4E-13 1.5E-17 118.3 9.4 78 515-604 28-106 (108)
336 2xnq_A Nuclear polyadenylated 99.4 7.8E-13 2.7E-17 114.3 10.7 75 515-601 19-95 (97)
337 2e5j_A Methenyltetrahydrofolat 99.4 3.9E-13 1.3E-17 116.1 8.3 79 516-603 17-96 (97)
338 2dit_A HIV TAT specific factor 99.4 8E-13 2.7E-17 117.4 10.5 82 413-497 12-105 (112)
339 2f3j_A RNA and export factor b 99.4 8.4E-13 2.9E-17 127.2 11.1 83 515-602 85-168 (177)
340 3pgw_A U1-A; protein-RNA compl 99.4 4.3E-12 1.5E-16 131.1 16.8 85 516-603 7-92 (282)
341 2j8a_A Histone-lysine N-methyl 99.4 5.8E-13 2E-17 118.8 8.5 78 518-599 2-94 (136)
342 1wf0_A TDP-43, TAR DNA-binding 99.4 6.1E-13 2.1E-17 112.6 7.9 79 517-605 4-82 (88)
343 2pe8_A Splicing factor 45; RRM 99.4 1.2E-12 4E-17 114.9 9.7 83 517-600 7-93 (105)
344 2e44_A Insulin-like growth fac 99.4 1.8E-12 6.1E-17 111.5 9.6 78 517-602 14-93 (96)
345 1jmt_A Splicing factor U2AF 35 99.4 2.4E-13 8E-18 119.2 4.0 71 421-491 20-103 (104)
346 2cq2_A Hypothetical protein LO 99.4 1.6E-12 5.5E-17 115.2 9.1 78 516-603 23-108 (114)
347 3tyt_A Heterogeneous nuclear r 99.3 8.1E-13 2.8E-17 130.4 7.2 76 415-491 122-204 (205)
348 3v4m_A Splicing factor U2AF 65 99.3 1.4E-12 4.9E-17 114.4 8.0 79 415-493 4-96 (105)
349 2dit_A HIV TAT specific factor 99.3 7.3E-12 2.5E-16 111.2 12.5 87 515-605 12-106 (112)
350 3zzy_A Polypyrimidine tract-bi 99.3 3.4E-12 1.2E-16 115.6 10.1 78 518-604 28-109 (130)
351 3d2w_A TAR DNA-binding protein 99.3 3.2E-12 1.1E-16 108.6 9.3 78 516-603 9-86 (89)
352 3v4m_A Splicing factor U2AF 65 99.3 3.9E-12 1.3E-16 111.6 9.4 86 516-601 3-97 (105)
353 1wg1_A KIAA1579 protein, homol 99.3 4.3E-12 1.5E-16 107.4 9.1 74 518-602 5-79 (88)
354 3sde_A Paraspeckle component 1 99.3 2.7E-12 9.2E-17 131.4 9.4 81 415-495 95-180 (261)
355 2voo_A Lupus LA protein; RNA-b 99.3 9.3E-12 3.2E-16 121.6 12.8 78 518-600 109-186 (193)
356 1sjr_A Polypyrimidine tract-bi 99.3 3.1E-12 1.1E-16 120.4 8.8 78 518-603 46-126 (164)
357 1qm9_A Polypyrimidine tract-bi 99.3 2.4E-12 8.3E-17 125.7 8.2 76 414-493 118-196 (198)
358 3ue2_A Poly(U)-binding-splicin 99.3 3.8E-12 1.3E-16 114.0 8.6 79 415-493 19-108 (118)
359 2adc_A Polypyrimidine tract-bi 99.3 4.4E-12 1.5E-16 127.2 9.9 76 414-493 149-227 (229)
360 2hzc_A Splicing factor U2AF 65 99.3 5.2E-12 1.8E-16 106.3 8.7 71 517-597 5-86 (87)
361 2bz2_A Negative elongation fac 99.3 4.1E-12 1.4E-16 114.5 8.3 77 516-604 37-114 (121)
362 2e5i_A Heterogeneous nuclear r 99.3 6.5E-12 2.2E-16 113.3 9.6 76 518-603 25-104 (124)
363 3ue2_A Poly(U)-binding-splicin 99.3 5.2E-12 1.8E-16 113.1 8.3 84 517-600 19-108 (118)
364 2dnl_A Cytoplasmic polyadenyla 99.3 1.5E-11 5E-16 109.5 10.3 75 518-599 8-86 (114)
365 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.6E-11 1.6E-15 103.6 12.0 75 415-495 9-91 (100)
366 3u1l_A PRE-mRNA-splicing facto 99.2 1.3E-11 4.5E-16 123.7 7.8 82 516-603 132-231 (240)
367 3s6e_A RNA-binding protein 39; 99.2 5.1E-11 1.8E-15 105.9 9.8 80 517-600 6-92 (114)
368 1jmt_A Splicing factor U2AF 35 99.2 1.4E-11 4.9E-16 107.8 5.8 75 523-598 20-103 (104)
369 3tht_A Alkylated DNA repair pr 99.2 4.3E-11 1.5E-15 126.2 8.7 75 413-492 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.1 1E-10 3.5E-15 103.9 8.9 77 414-493 5-92 (114)
371 2d9o_A DNAJ (HSP40) homolog, s 99.0 1E-09 3.6E-14 95.0 11.1 66 528-604 27-93 (100)
372 2dnr_A Synaptojanin-1; RRM dom 99.0 8.8E-10 3E-14 92.2 9.9 79 515-601 4-86 (91)
373 2dnr_A Synaptojanin-1; RRM dom 98.9 1.9E-09 6.5E-14 90.2 7.0 71 416-493 7-85 (91)
374 1owx_A Lupus LA protein, SS-B, 98.9 3.4E-09 1.2E-13 94.4 8.4 73 415-492 17-94 (121)
375 1ufw_A Synaptojanin 2; RNP dom 98.8 3.7E-09 1.3E-13 88.9 6.2 79 514-600 11-94 (95)
376 3tht_A Alkylated DNA repair pr 98.8 7.5E-09 2.6E-13 109.1 9.3 75 515-599 15-97 (345)
377 1ufw_A Synaptojanin 2; RNP dom 98.7 6.7E-09 2.3E-13 87.3 4.2 71 415-492 14-93 (95)
378 3dxb_A Thioredoxin N-terminall 98.6 9.2E-08 3.1E-12 95.0 9.8 77 416-492 124-211 (222)
379 3dxb_A Thioredoxin N-terminall 98.6 1.8E-07 6.3E-12 92.9 10.7 68 533-600 140-212 (222)
380 1owx_A Lupus LA protein, SS-B, 98.6 2E-07 6.7E-12 83.0 9.2 74 515-598 15-93 (121)
381 2l9w_A U4/U6 snRNA-associated- 98.2 4.4E-06 1.5E-10 71.5 8.3 71 415-490 20-96 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.1 1.3E-05 4.5E-10 68.1 9.8 89 414-531 6-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.9 4.4E-05 1.5E-09 65.4 8.7 74 518-597 21-96 (117)
384 1wey_A Calcipressin 1; structu 97.5 0.00018 6.1E-09 61.5 6.6 77 518-600 5-83 (104)
385 1wey_A Calcipressin 1; structu 97.4 0.00031 1.1E-08 60.0 6.8 74 415-493 4-83 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.3 0.00057 1.9E-08 60.0 7.5 71 415-491 23-94 (119)
387 1uw4_A UPF3X; nonsense mediate 97.2 0.00094 3.2E-08 56.0 7.6 66 417-482 2-71 (91)
388 1wwh_A Nucleoporin 35, nucleop 97.1 0.0011 3.9E-08 58.1 7.2 71 518-599 24-95 (119)
389 2dhx_A Poly (ADP-ribose) polym 96.9 0.006 2.1E-07 51.8 9.8 79 518-604 8-87 (104)
390 1whv_A Poly(A)-specific ribonu 96.5 0.008 2.7E-07 50.5 7.8 54 414-475 14-67 (100)
391 3p3d_A Nucleoporin 53; structu 96.4 0.0036 1.2E-07 55.7 5.6 78 518-600 7-98 (132)
392 3ctr_A Poly(A)-specific ribonu 96.1 0.005 1.7E-07 51.9 4.6 53 417-477 7-60 (101)
393 3p3d_A Nucleoporin 53; structu 95.9 0.013 4.5E-07 52.0 6.3 76 416-492 7-97 (132)
394 1uw4_A UPF3X; nonsense mediate 95.6 0.049 1.7E-06 45.5 8.5 67 519-589 2-71 (91)
395 2l08_A Regulator of nonsense t 95.5 0.0092 3.2E-07 50.3 3.8 67 416-482 9-79 (97)
396 3pq1_A Poly(A) RNA polymerase; 95.3 0.008 2.7E-07 65.4 3.2 62 416-482 53-114 (464)
397 2l08_A Regulator of nonsense t 92.9 0.21 7.1E-06 42.1 6.3 69 518-590 9-80 (97)
398 1whv_A Poly(A)-specific ribonu 92.7 0.32 1.1E-05 40.8 7.1 52 518-582 16-67 (100)
399 3ctr_A Poly(A)-specific ribonu 92.5 0.16 5.4E-06 42.8 5.0 54 518-584 6-60 (101)
400 3pq1_A Poly(A) RNA polymerase; 86.3 0.36 1.2E-05 52.4 3.3 56 518-583 53-108 (464)
401 2pk2_A Cyclin-T1, protein TAT; 80.3 0.34 1.2E-05 51.1 0.0 17 528-544 227-243 (358)
402 3d45_A Poly(A)-specific ribonu 72.5 6.7 0.00023 43.1 7.7 54 416-477 440-494 (507)
403 2v94_A RPS24, 30S ribosomal pr 56.2 40 0.0014 28.6 7.7 52 528-580 37-89 (107)
404 4eyt_A Telomerase associated p 55.1 76 0.0026 25.7 8.7 55 414-475 10-64 (129)
405 2xzm_P RPS24E; ribosome, trans 47.9 57 0.002 29.3 7.6 52 528-580 31-83 (149)
406 3uzu_A Ribosomal RNA small sub 46.5 42 0.0014 33.6 7.5 33 417-449 115-147 (279)
407 1b34_A Protein (small nuclear 45.7 4.3 0.00015 35.4 0.0 8 441-448 12-19 (119)
408 2l6f_A Focal adhesion kinase 1 50.1 4.8 0.00016 38.2 0.0 6 583-588 116-121 (215)
409 3fut_A Dimethyladenosine trans 43.7 91 0.0031 30.9 9.5 32 417-449 111-142 (271)
410 1xn9_A 30S ribosomal protein S 43.5 84 0.0029 26.3 7.6 52 528-580 28-80 (101)
411 2g0c_A ATP-dependent RNA helic 43.0 53 0.0018 25.5 6.1 67 418-492 2-75 (76)
412 1ywx_A 30S ribosomal protein S 43.0 89 0.0031 26.2 7.7 51 528-579 28-79 (102)
413 1b34_A Protein (small nuclear 41.8 5.4 0.00019 34.8 0.0 10 482-491 11-20 (119)
414 4e8u_A Putative uncharacterize 39.9 37 0.0013 31.4 5.3 57 418-476 14-82 (172)
415 2cu1_A Mitogen-activated prote 35.3 78 0.0027 26.4 5.9 70 522-602 20-89 (103)
416 4eyt_A Telomerase associated p 34.5 1.2E+02 0.004 24.7 6.7 53 518-582 12-64 (129)
417 3u5c_Y RP50, 40S ribosomal pro 31.0 1.6E+02 0.0054 26.0 7.6 52 528-580 33-85 (135)
418 3d45_A Poly(A)-specific ribonu 30.1 89 0.003 34.1 7.3 54 518-584 440-494 (507)
419 2g0c_A ATP-dependent RNA helic 29.8 1.3E+02 0.0044 23.1 6.4 62 529-599 12-75 (76)
420 3tqs_A Ribosomal RNA small sub 29.1 1E+02 0.0034 30.2 7.0 32 418-449 98-129 (255)
421 2g1d_A 30S ribosomal protein S 28.7 97 0.0033 25.8 5.6 51 528-579 29-80 (98)
422 3swz_A Steroid 17-alpha-hydrox 28.5 55 0.0019 34.8 5.3 62 417-486 15-80 (494)
423 3fry_A Probable copper-exporti 28.2 1.3E+02 0.0044 22.4 6.1 56 417-478 7-62 (73)
424 3tbg_A Cytochrome P450 2D6; mo 26.6 37 0.0013 35.9 3.5 58 420-485 20-80 (479)
425 3eiv_A Single-stranded DNA-bin 26.5 8.5 0.00029 36.7 -1.5 9 416-424 5-13 (199)
426 3e6i_A CYPIIE1, P450-J, cytoch 21.5 81 0.0028 33.1 5.0 60 417-484 17-79 (476)
427 1i4w_A Mitochondrial replicati 20.6 56 0.0019 33.9 3.3 51 417-483 143-202 (353)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5e-33 Score=272.72 Aligned_cols=178 Identities=24% Similarity=0.425 Sum_probs=152.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||+.||.|..|+|+++. +|+++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 4567999999999999999999999999999999999997 799999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
........ .......++|||+|||+.+++++ |+++|..||.|..|+|+++..+|.++|||||+|
T Consensus 90 ~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F 153 (196)
T 1l3k_A 90 VSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHH----LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153 (196)
T ss_dssp CC-----------------------CCSEEEEECCTTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred cCcccccc------------cccCCCcceEEEeCCCCCCCHHH----HHHHHhcCCCeEEEEEeecCCCCCccceEEEEE
Confidence 65432111 11123468999999999999998 778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCceeCCeeeEEeccccCCCCCC
Q 045516 572 TDADSFNKALEMSGTEIGGYSLVVDEAKQRGDFGS 606 (675)
Q Consensus 572 ~~~e~A~~Al~lng~~~~Gr~l~V~~a~~r~~~~~ 606 (675)
.+.++|.+||.+++..|+|+.|.|.++.++.....
T Consensus 154 ~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 154 DDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp SSHHHHHHHHHCSCCEETTEECEEEECC-------
T ss_pred CCHHHHHHHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 99999999999889999999999999998877643
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.2e-33 Score=276.49 Aligned_cols=168 Identities=25% Similarity=0.436 Sum_probs=150.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...+||||+|||+++|+++|++||++||.|.+|+|+++. +++++|||||+|.+.++|.+||. ||+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 356899999999999999999999999999999999997 89999999999999999999997 9999999999999987
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
........ ...++|||+||++.+++++ |+++|..||.|..|+|+++. +.++|||||+|
T Consensus 93 ~~~~~~~~----------------~~~~~l~v~nl~~~~t~~~----l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f 150 (213)
T 4f02_A 93 QRDPSLRK----------------SGVGNIFIKNLDKSIDNKA----LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 150 (213)
T ss_dssp CCCTHHHH----------------HCTTEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEEET--TEEEEEEEEEE
T ss_pred cccccccc----------------cccccceECCcccccHHHH----HHHHHhhcCCeEEEEeeccC--CCCceEEEEEe
Confidence 64322111 1157899999999999998 77899999999999999874 55899999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 572 TDADSFNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 572 ~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
.+.++|.+||. |||..|+|+.|+|.++.++..
T Consensus 151 ~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 151 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 99999999998 999999999999999987644
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-32 Score=256.49 Aligned_cols=164 Identities=23% Similarity=0.464 Sum_probs=151.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERG 495 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~ 495 (675)
|+|||+|||+++++++|+++|+.||.|..|+|+++.+++++|||||+|.+.++|.+||. |||..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 69999999999999999999999999999999999988999999999999999999996 99999999999999986543
Q ss_pred CCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHH
Q 045516 496 AYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDAD 575 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e 575 (675)
.. .....++|||+|||..+++++ |+++|..||.|..|.|+++..+|.++|||||+|.+.+
T Consensus 81 ~~----------------~~~~~~~l~v~nl~~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 81 QS----------------SSDDTFNLFVGDLNVNVDDET----LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp CC----------------CCTTCEEEEEESCCTTCCHHH----HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred CC----------------CCCCCceEEECCCCCCCCHHH----HHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 21 123378999999999999998 7788999999999999999999999999999999999
Q ss_pred HHHHHHH-hCCceeCCeeeEEecccc
Q 045516 576 SFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 576 ~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
+|.+||. |||..|+|+.|+|.|+++
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999998 999999999999999863
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.1e-30 Score=249.27 Aligned_cols=162 Identities=25% Similarity=0.490 Sum_probs=150.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+++++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999987 89999999999999999999997 99999999999999986
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
.... ....++|||+|||..+++++ |+++|..||.|..|.|+++..+|.++|||||+|.
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 139 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQ----LDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 139 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHH----HHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHH----HHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEEC
Confidence 5432 12368999999999999988 7889999999999999999889999999999999
Q ss_pred CHHHHHHHHH-hCCceeCC--eeeEEecc
Q 045516 573 DADSFNKALE-MSGTEIGG--YSLVVDEA 598 (675)
Q Consensus 573 ~~e~A~~Al~-lng~~~~G--r~l~V~~a 598 (675)
+.++|.+|+. |||..|.| +.|+|.|+
T Consensus 140 ~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 140 KREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999998 99999988 99999885
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.3e-30 Score=259.39 Aligned_cols=180 Identities=23% Similarity=0.403 Sum_probs=153.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+++++++|++||..||.|..|+|+++. +|+++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35899999999999999999999999999999999987 89999999999999999999998 99999999999998875
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
......+.. ..........++|||+|||..+++++ |+++|..||.|..|+|+++..+|.++|||||+|.
T Consensus 107 ~~~~~~~~~-------~~~~~~~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 175 (216)
T 2qfj_A 107 NIGQAQPII-------DQLAEEARAFNRIYVASVHQDLSDDD----IKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYE 175 (216)
T ss_dssp CCGGGHHHH-------HHHHHHHTTSCEEEEECCCTTCCHHH----HHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred Cccccchhh-------hhhhcccCCCcEEEEeCCCCcCCHHH----HHHHHhccCCeeEEEEEecCCCCCcCceEEEEec
Confidence 432111000 00000112368999999999999998 7789999999999999999999999999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeeEEeccccCCCCC
Q 045516 573 DADSFNKALE-MSGTEIGGYSLVVDEAKQRGDFG 605 (675)
Q Consensus 573 ~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~~ 605 (675)
+.++|.+||. |||..|+|+.|+|.|+.++....
T Consensus 176 ~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 176 KAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp SHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred CHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999998 99999999999999998875443
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.2e-30 Score=246.58 Aligned_cols=161 Identities=27% Similarity=0.517 Sum_probs=148.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
.++|||+|||+++++++|+++|..||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999998 89999999999999999999998 999999999999999865
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
... ....++|||+|||..+++++ |+++|..||.|..|+|+++..+|.++|||||+|.+
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKE----LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHH----HHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCC
Confidence 421 11258899999999999988 77899999999999999998899999999999999
Q ss_pred HHHHHHHHH-hCCceeCCee--eEEecc
Q 045516 574 ADSFNKALE-MSGTEIGGYS--LVVDEA 598 (675)
Q Consensus 574 ~e~A~~Al~-lng~~~~Gr~--l~V~~a 598 (675)
.++|.+|+. |||..|+|+. |+|.||
T Consensus 140 ~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 140 RIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999998 9999999975 888775
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.7e-31 Score=254.86 Aligned_cols=164 Identities=21% Similarity=0.462 Sum_probs=150.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
++++|||+|||+++++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+||. ++..|.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 46899999999999999999999999999999999997 89999999999999999999998 35789999999988764
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
.... ...++|||+|||..+++++ |+++|+.||.|..|+|+++..+|.++|||||+|.+
T Consensus 81 ~~~~------------------~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 81 RDEQ------------------DKTGKIFVGGIGPDVRPKE----FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp HHHH------------------HHCEEEEEEEECTTCCHHH----HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred hhhc------------------cCCCeEEECCCCCCCCHHH----HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 3211 1257999999999999998 77889999999999999999899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeeEEeccccC
Q 045516 574 ADSFNKALEMSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 574 ~e~A~~Al~lng~~~~Gr~l~V~~a~~r 601 (675)
.++|.+||++|+..|+|+.|+|.|+.+|
T Consensus 139 ~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 139 ADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999999999876
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.9e-29 Score=242.21 Aligned_cols=162 Identities=21% Similarity=0.335 Sum_probs=143.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCC-C--CcccEEEEEecCHHHHHHHHH-hCCcccC---CeeEE
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD-G--RFKGYGHVEFASVEDAHKAIE-LNGQMLG---NRAIR 487 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-g--~~kG~afV~F~~~e~A~~Al~-l~g~~~~---gr~i~ 487 (675)
+.++|||+|||+++++++|+++|..||.|..|+|+++.. + +++|||||+|.+.++|.+||. ||+..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 578999999999999999999999999999999999984 4 899999999999999999997 9998876 67788
Q ss_pred EEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEE
Q 045516 488 LDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIA 567 (675)
Q Consensus 488 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~a 567 (675)
+.++...... ....++|||+|||..+++++ |+++|..||.|..|+|+++. +|.++|||
T Consensus 82 ~~~~~~~~~~-----------------~~~~~~l~v~nl~~~~t~~~----l~~~F~~~G~i~~v~~~~~~-~g~~~g~a 139 (175)
T 3nmr_A 82 MKPADSEKNN-----------------AVEDRKLFIGMISKKCTEND----IRVMFSSFGQIEECRILRGP-DGLSRGCA 139 (175)
T ss_dssp EEECGGGCCS-----------------CGGGSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECT-TSCEEEEE
T ss_pred Eccccccccc-----------------cCCCCeEEEcCCCCcCCHHH----HHHHHHhCCCEEEEEEEECC-CCCEEEEE
Confidence 8777644321 12368999999999999998 77889999999999999985 59999999
Q ss_pred EEEeCCHHHHHHHHH-hCCceeC---CeeeEEecc
Q 045516 568 YLDFTDADSFNKALE-MSGTEIG---GYSLVVDEA 598 (675)
Q Consensus 568 fV~F~~~e~A~~Al~-lng~~~~---Gr~l~V~~a 598 (675)
||+|.+.++|.+||. |||..|. |+.|+|.|+
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 140 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 999999999999998 9998776 499999987
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=5.5e-29 Score=244.27 Aligned_cols=180 Identities=23% Similarity=0.471 Sum_probs=149.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhC----C-------CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCC
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEV----A-------EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGN 483 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~g 483 (675)
..++|||+|||+.+++++|++||..| | .|..+++. +++|||||+|.+.++|.+||.|||..|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 46899999999999999999999999 5 66777664 45899999999999999999999999999
Q ss_pred eeEEEEeccccCCCCCCCCCC--CCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCC
Q 045516 484 RAIRLDFARERGAYTPYSGGN--ESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTG 561 (675)
Q Consensus 484 r~i~V~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG 561 (675)
+.|.|.++............. ..............++|||+|||..+++++ |+++|..||.|..|+|+++..+|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~----l~~~f~~~G~v~~~~~~~~~~~~ 153 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQ----VKELLTSFGPLKAFNLVKDSATG 153 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHH----HHHHHHTBSCEEEEEEEECTTTC
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHHcCCccEEEEeecCCCC
Confidence 999999987653221111000 000111112234579999999999999998 77889999999999999998899
Q ss_pred CeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 562 SVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 562 ~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
.++|||||+|.+.++|.+||. |||..|+|+.|+|.++.++..
T Consensus 154 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 154 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999998 999999999999999987654
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=4.1e-30 Score=247.56 Aligned_cols=164 Identities=31% Similarity=0.442 Sum_probs=144.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
....++|||+|||+++++++|+++|..||.|..+.|....+++++|||||+|.+.++|.+||+|||..|.|+.|.|.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 45689999999999999999999999999877644444447889999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeC
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFT 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~ 572 (675)
...... ....++|||+|||..+++++ |+++|..||.|..+ ..+|.++|||||+|.
T Consensus 90 ~~~~~~----------------~~~~~~l~v~nlp~~~t~~~----l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~ 144 (175)
T 1fje_B 90 GRDSKK----------------VRAARTLLAKNLSFNITEDE----LKEVFEDALEIRLV-----SQDGKSKGIAYIEFK 144 (175)
T ss_dssp CSSCST----------------TGGGGEEEEESCCSSCCHHH----HHHHCTTCSEEEEE-----CSSSSCCSEEEEECS
T ss_pred Cccccc----------------cccCCEEEEeCCCCCCCHHH----HHHHHHhcCeEEEe-----cCCCCCceEEEEEEC
Confidence 543211 12378999999999999998 77899999998877 466899999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeeEEeccccC
Q 045516 573 DADSFNKALE-MSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 573 ~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r 601 (675)
+.++|.+||. |||..|+|+.|+|.|+.++
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 145 SEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999998 9999999999999999876
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=6.2e-29 Score=238.30 Aligned_cols=157 Identities=26% Similarity=0.566 Sum_probs=142.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhC----C-------CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCC
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEV----A-------EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGN 483 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~g 483 (675)
+.++|||+|||+.+++++|+++|+.| | .|..+++.+ ++|||||+|.+.++|.+||.||+..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHHHhCCcEecC
Confidence 46899999999999999999999999 7 788887764 4899999999999999999999999999
Q ss_pred eeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCe
Q 045516 484 RAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSV 563 (675)
Q Consensus 484 r~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~ 563 (675)
+.|.|.++..... ....++|||+|||..+++++ |+++|..||.|..|+|+++..+|.+
T Consensus 78 ~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~g~~ 135 (172)
T 2g4b_A 78 QSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQ----VKELLTSFGPLKAFNLVKDSATGLS 135 (172)
T ss_dssp EECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHH----HHHHHHTTSCEEEEEEEECTTTCSE
T ss_pred ceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHH----HHHHHHhcCCceEEEEEecCCCCCc
Confidence 9999988654321 11268999999999999988 7788999999999999999889999
Q ss_pred eeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecc
Q 045516 564 KGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEA 598 (675)
Q Consensus 564 rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a 598 (675)
+|||||+|.+.++|.+|+. |||..|+|+.|.|.|+
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 136 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999998 9999999999999987
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=3.8e-28 Score=240.74 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=140.7
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLP-FSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
++++|||+||| +.+++++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|.+||. |||..|.|+.|+|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 56899999999 89999999999999999999999875 38999999999999999998 99999999999999986
Q ss_pred ccCCCCCC-----CCC--------CCCCCccC------CCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcE--EE
Q 045516 493 ERGAYTPY-----SGG--------NESNSFQK------GGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEI--TR 551 (675)
Q Consensus 493 ~~~~~~~~-----~~~--------~~~~~~~~------~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I--~~ 551 (675)
........ .+. .....+.. .....+.++|||+|||+.+++++ |+++|..||.| ..
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~----L~~~F~~~G~v~~~~ 154 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEEN----FFEICDELGVKRPTS 154 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHH----HHHHHHHHTCCCCSE
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHH----HHHHHHhcCCcceEE
Confidence 54321100 000 00000100 01234578999999999999998 77889999999 89
Q ss_pred EEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCe----eeEEecc
Q 045516 552 ISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGY----SLVVDEA 598 (675)
Q Consensus 552 v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr----~l~V~~a 598 (675)
|+|+.+. +..+|||||+|.+.++|..||. |||..|.|+ ++.|.++
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9998875 5567999999999999999998 999999887 5666654
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.4e-28 Score=255.16 Aligned_cols=172 Identities=22% Similarity=0.358 Sum_probs=145.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+.+++++|+++|..|| .|..|+|+++..|.++|||||+|.+.++|.+||. |||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999998888999999999999999999998 99999999999999987
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCC-cCHHHHHHHHHhhhcccCcEEEEEecccCC-CCCeeeEEEEE
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSS-VGEDQVRASLEEHFGSCGEITRISVPKDYD-TGSVKGIAYLD 570 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~te~~i~~~L~~~F~~~G~I~~v~i~~d~~-tG~~rG~afV~ 570 (675)
+....... .......++|||+|||.. +++++ |+++|..||.|..|+|+++.. ||.++|||||+
T Consensus 196 ~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~ 260 (292)
T 2ghp_A 196 PLEKSKRT-----------DSATLEGREIMIRNLSTELLDENL----LRESFEGFGSIEKINIPAGQKEHSFNNCCAFMV 260 (292)
T ss_dssp CC--------------------CCTTTEEEEEEECTTTCCHHH----HHHHHGGGSCEEEEECCSCCC---CCCEEEEEE
T ss_pred CCcccccc-----------cccCCCCceEEEECCCcccCCHHH----HHHHHhccCCeeEEEEEecCCcCCCCceEEEEE
Confidence 54322111 112334789999999999 99988 778999999999999999876 69999999999
Q ss_pred eCCHHHHHHHHHhCCceeCCeeeEEeccccC
Q 045516 571 FTDADSFNKALEMSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 571 F~~~e~A~~Al~lng~~~~Gr~l~V~~a~~r 601 (675)
|.+.++|.+||.|||..|+|+.|+|.|+.++
T Consensus 261 F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 261 FENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred eCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 9999999999999999999999999999876
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=6.4e-28 Score=250.67 Aligned_cols=177 Identities=18% Similarity=0.339 Sum_probs=145.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeE
Q 045516 412 QSGGSKTLFVGNLPFSVEQADVQ----NFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAI 486 (675)
Q Consensus 412 ~~~~~~tlfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i 486 (675)
.....++|||+|||+++++++|+ ++|..||.|..|+|++ +++++|||||+|.+.++|.+||. |||..|.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 34568999999999999999966 8999999999999986 78899999999999999999996 99999999999
Q ss_pred EEEeccccCCCCCCCCCCC-------------------------------------------------------------
Q 045516 487 RLDFARERGAYTPYSGGNE------------------------------------------------------------- 505 (675)
Q Consensus 487 ~V~~a~~~~~~~~~~~~~~------------------------------------------------------------- 505 (675)
+|.++...........+..
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 9999865432100000000
Q ss_pred --------------CC------------------CccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEE
Q 045516 506 --------------SN------------------SFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRIS 553 (675)
Q Consensus 506 --------------~~------------------~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~ 553 (675)
.. .........+.++|||+||+..+++++ |+++|..||.|..|+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~----l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELM----LSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHH----HHHHHHhcCCeEEEE
Confidence 00 000001233568999999999999998 778899999999999
Q ss_pred ecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeccc
Q 045516 554 VPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG-GYSLVVDEAK 599 (675)
Q Consensus 554 i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~-Gr~l~V~~a~ 599 (675)
|+.+. +|||||+|.+.++|.+||. |||..|+ |+.|+|.|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99763 5899999999999999998 9999999 9999999986
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=9.6e-28 Score=249.60 Aligned_cols=169 Identities=21% Similarity=0.298 Sum_probs=153.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+.+++++|+++|..||.|..|+|+++. +|.++|||||+|.+.++|.+||. |||..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999987 89999999999999999999996 99999999999999987
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCc-CHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSV-GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
...... .....++|||+|||..+ ++++ |+++|..||.|..|.|+++. +|.++|||||+|
T Consensus 174 ~~~~~~---------------~~~~~~~l~v~nlp~~~~~~~~----l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f 233 (284)
T 3smz_A 174 AGQLTP---------------ALLHSRCLCVDRLPPGFNDVDA----LCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEY 233 (284)
T ss_dssp GGGCCT---------------TTTSCSEEEEECCCTTCCCHHH----HHHHTCSSSCCSEEEEEECS-SCCEEEEEEEEC
T ss_pred CCCCCc---------------ccCCccEEEEecCCcccCCHHH----HHHHhhCCCCeEEEEEEECC-CCCcccEEEEEe
Confidence 653211 12337899999999996 8887 88999999999999999986 799999999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 572 TDADSFNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 572 ~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
.+.++|.+||. |||..|+|+.|+|.|+.++..
T Consensus 234 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 234 ETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999998 999999999999999987655
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.7e-27 Score=240.21 Aligned_cols=176 Identities=22% Similarity=0.323 Sum_probs=146.5
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPF-SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
...+++|||+|||+ ++++++|++||+.||.|..|+|+++. +|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45679999999999 99999999999999999999999875 8999999999999999997 999999999999999
Q ss_pred ccccCCCCCCCCCCC-----------CCCcc------CCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccC-cEEEE
Q 045516 491 ARERGAYTPYSGGNE-----------SNSFQ------KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCG-EITRI 552 (675)
Q Consensus 491 a~~~~~~~~~~~~~~-----------~~~~~------~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G-~I~~v 552 (675)
+.......+...... ...+. ......+.++|||+|||..+++++ |+++|..|| .|..|
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEED----LKVLFSSNGGVVKGF 182 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHH----HHHHHHTTSCCEEEE
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHH----HHHHHHHcCCCeeEE
Confidence 976532221111000 00000 011234579999999999999988 778899999 99999
Q ss_pred EecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeccccC
Q 045516 553 SVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG-GYSLVVDEAKQR 601 (675)
Q Consensus 553 ~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~-Gr~l~V~~a~~r 601 (675)
+|+.. .+|||||+|.+.++|.+||. |||..|+ |+.|+|.|++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99763 27899999999999999998 9999999 999999999864
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.3e-27 Score=235.02 Aligned_cols=174 Identities=22% Similarity=0.329 Sum_probs=144.8
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPF-SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
.+++|||+|||+ .+++++|+++|+.||.|..|+|+++. +|||||+|.+.++|.+||. |||..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 358999999999 99999999999999999999999865 7899999999999999998 99999999999999997
Q ss_pred ccCCCCCCCCCCCC-----------CCcc------CCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccC-cEEEEEe
Q 045516 493 ERGAYTPYSGGNES-----------NSFQ------KGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCG-EITRISV 554 (675)
Q Consensus 493 ~~~~~~~~~~~~~~-----------~~~~------~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G-~I~~v~i 554 (675)
......+....... ..+. ......+.++|||+|||..+++++ |+++|..|| .|..|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~----l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEED----LKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHH----HHHHHHHTTSCCCEEEE
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHH----HHHHHHHcCCCceEEEE
Confidence 65322221110000 0000 011234589999999999999988 778888999 9999999
Q ss_pred cccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeccccC
Q 045516 555 PKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG-GYSLVVDEAKQR 601 (675)
Q Consensus 555 ~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~-Gr~l~V~~a~~r 601 (675)
+.+. +|||||+|.+.++|.+||. |||..|+ |+.|+|.|++++
T Consensus 154 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7752 7999999999999999998 9999999 999999998764
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.1e-27 Score=248.06 Aligned_cols=161 Identities=21% Similarity=0.349 Sum_probs=139.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
....++|||+|||+.+++++|++||..||.|..|+|+++..+ ++|||||+|.+.++|.+||.||+..|.|+.|.|.++.
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 456799999999999999999999999999999999998755 4899999999999999999999999999999998752
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccC-cEEEEEecccCCCCCeeeEEEEEe
Q 045516 493 ERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCG-EITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G-~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
.++|||+|||+.+++++ |+++|..|| .|..|+|+++.. |.++|||||+|
T Consensus 117 -------------------------~~~l~v~nlp~~~t~~~----l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f 166 (292)
T 2ghp_A 117 -------------------------ECTLWMTNFPPSYTQRN----IRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDV 166 (292)
T ss_dssp -------------------------SCEEEEECCCTTCCHHH----HHHHHHHTTCCCCEEECC--------CCEEEEEC
T ss_pred -------------------------CCEEEEECCCCCCCHHH----HHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEE
Confidence 68999999999999998 778888999 999999999866 88999999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 572 TDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 572 ~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
.+.+.|..||. |||..|+|+.|.|.++.+....
T Consensus 167 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 167 TSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99999999999 9999999999999999876543
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=5.6e-27 Score=241.20 Aligned_cols=158 Identities=27% Similarity=0.457 Sum_probs=143.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++|+++|++||..||.|..|+|.+ ++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45678999999999999999999999999999999975 38999999999999999997 9999999999999997
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEe
Q 045516 492 RERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDF 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F 571 (675)
.. ..+|||+|||+.+++++ |+.+|..||.|..|.|+++ .+|.++|||||+|
T Consensus 94 ~~------------------------~~~l~v~nl~~~~t~~~----l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f 144 (261)
T 3sde_A 94 TH------------------------GAALTVKNLSPVVSNEL----LEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEF 144 (261)
T ss_dssp CC------------------------SSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEE
T ss_pred cc------------------------CCcccccCCCCCCCHHH----HHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEe
Confidence 42 47899999999999988 7788999999999999999 6899999999999
Q ss_pred CCHHHHHHHHH-h-CCceeC---CeeeEEeccccCCCC
Q 045516 572 TDADSFNKALE-M-SGTEIG---GYSLVVDEAKQRGDF 604 (675)
Q Consensus 572 ~~~e~A~~Al~-l-ng~~~~---Gr~l~V~~a~~r~~~ 604 (675)
.+.++|.+||. | ++..+. ++.|.|.++.+....
T Consensus 145 ~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 145 AAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEESS
T ss_pred CCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCcc
Confidence 99999999998 7 555555 999999999876543
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=8.8e-27 Score=242.32 Aligned_cols=155 Identities=20% Similarity=0.335 Sum_probs=143.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+.+++++|++||+.|| |..|.| ++++|||||+|.+.++|.+||. |||..|.|+.|.|.+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-
Confidence 458999999999999999999999999 999988 4668999999999999999997 99999999999998742
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~ 573 (675)
..++|||+|||+.+++++ |+++|..||.|..|.|+++..+|.++|||||+|.+
T Consensus 94 -----------------------~~~~l~v~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 146 (284)
T 3smz_A 94 -----------------------TDALLCVANLPPSLTQQQ----FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMK 146 (284)
T ss_dssp -----------------------CSCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred -----------------------CCCEEEEcCCCCcCCHHH----HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECC
Confidence 157999999999999998 77889999999999999999999999999999999
Q ss_pred HHHHHHHHH-hCCceeCCeeeEEeccccCCC
Q 045516 574 ADSFNKALE-MSGTEIGGYSLVVDEAKQRGD 603 (675)
Q Consensus 574 ~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~ 603 (675)
.++|..|+. |||..|+|+.|.|.++.+...
T Consensus 147 ~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 147 KDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999997 999999999999999987543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2.8e-20 Score=176.14 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=113.6
Q ss_pred EEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEE
Q 045516 445 DVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFI 523 (675)
Q Consensus 445 ~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 523 (675)
.+.|+++.. +++|||||+|.+.+.|++||. +++....+..+.+............. ............++|||
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS-----HHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC-----CCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc-----cccccccCCCCCCEEEE
Confidence 456666543 689999999999999999997 77654444444433222111000000 00011112344789999
Q ss_pred ecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCC
Q 045516 524 KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRG 602 (675)
Q Consensus 524 ~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~ 602 (675)
+|||+.+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.+.|..||. |||..|+|+.|+|.++.++.
T Consensus 76 ~nl~~~~~~~~----l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 76 DNLTYRTSPDT----LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp ESCCTTCCHHH----HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred eCCCCCCCHHH----HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999998 77888999999999999999999999999999999999999998 99999999999999998765
Q ss_pred CC
Q 045516 603 DF 604 (675)
Q Consensus 603 ~~ 604 (675)
..
T Consensus 152 ~~ 153 (158)
T 2kn4_A 152 PP 153 (158)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=3.9e-21 Score=211.17 Aligned_cols=86 Identities=24% Similarity=0.456 Sum_probs=79.6
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.++|||+||++.+++.+ |..||..||.|..|.|+.+..+|.++|||||+|.+.+.|..||. |||..|+|+.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESK----LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 3468999999999999998 78899999999999999999999999999999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|+.++...+
T Consensus 176 V~~a~~~~~~~ 186 (437)
T 3pgw_S 176 VDVERGRTVKG 186 (437)
T ss_pred EEEeCCCCCCC
Confidence 99998766543
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=9e-21 Score=169.97 Aligned_cols=108 Identities=28% Similarity=0.502 Sum_probs=74.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+++++++|++||+.||.|..|+|+++. +.++|||||+|.+.++|.+||. ||++.|.|+.|+|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35789999999999999999999999999999999986 4479999999999999999997 999999999999999876
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHH
Q 045516 494 RGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGED 533 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~ 533 (675)
+....... ........+|||+|||+.+|++
T Consensus 83 ~~~~~~~~----------~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 83 RKEREAEL----------GARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCC-------------------------------------
T ss_pred cccccccc----------ccccCCCCceEeCCCCCCcccc
Confidence 54322111 1112235679999999999875
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=155.81 Aligned_cols=80 Identities=34% Similarity=0.602 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
-+.++|||+|||+++|+++|+++|++||.|..|+|++++ +|+++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356899999999999999999999999999999999997 89999999999999999999997 9999999999999998
Q ss_pred cc
Q 045516 492 RE 493 (675)
Q Consensus 492 ~~ 493 (675)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 25
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=1.3e-19 Score=182.36 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=74.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccC--cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCG--EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G--~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.++|||+||++.+++++ |+++|..|| .|..|+|+++..+|+++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 68 ~~~lfVgnL~~~~te~~----L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDED----LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp -CEEEEESCCTTCCHHH----HHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred ccEEEEeCCCCCCCHHH----HHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 67999999999999998 778899999 99999999999999999999999999999999998 999999999999
Q ss_pred Eecccc
Q 045516 595 VDEAKQ 600 (675)
Q Consensus 595 V~~a~~ 600 (675)
|.++.+
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999864
No 26
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=2.8e-19 Score=179.85 Aligned_cols=80 Identities=18% Similarity=0.380 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVA--EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
...++|||+|||+++|+++|++||..|| .|..|+|++++ +++++|||||+|.+.++|.+||. ||++.|.|+.|+|.
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 3678999999999999999999999999 99999999997 89999999999999999999998 99999999999999
Q ss_pred eccc
Q 045516 490 FARE 493 (675)
Q Consensus 490 ~a~~ 493 (675)
++..
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 27
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=7.8e-19 Score=164.84 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=111.4
Q ss_pred CCcccEEEEEecCHHHHHHHHH-h-CCcccCCeeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcC
Q 045516 454 GRFKGYGHVEFASVEDAHKAIE-L-NGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531 (675)
Q Consensus 454 g~~kG~afV~F~~~e~A~~Al~-l-~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 531 (675)
...+|+++|+|.+.+.|++||. | ||..|.| .|.+.++..+......... .............++|||+|||+.++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--HHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS--CCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc--ccccccccCCCCCCEEEEeCCCCCCC
Confidence 4679999999999999999997 8 9999999 9999988654321111000 00111122334579999999999999
Q ss_pred HHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCC
Q 045516 532 EDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRG 602 (675)
Q Consensus 532 e~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~ 602 (675)
+++ |+.+|..||.|..|+|+++ ++|||||+|.+.++|..||. |||..|+|+.|+|.|+.++.
T Consensus 87 ~~~----l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTE----LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHH----HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHH----HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 998 7788899999999999987 58999999999999999998 99999999999999998753
No 28
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=3.5e-18 Score=161.49 Aligned_cols=80 Identities=31% Similarity=0.512 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+++++++|++||..||.|..|+|+.+. ++.++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999998 79999999999999999999998 9999999999999988
Q ss_pred cc
Q 045516 492 RE 493 (675)
Q Consensus 492 ~~ 493 (675)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=150.84 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+++++++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||. |||..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999998 79999999999999999999997 99999999999999985
Q ss_pred c
Q 045516 493 E 493 (675)
Q Consensus 493 ~ 493 (675)
.
T Consensus 85 ~ 85 (110)
T 3s8s_A 85 K 85 (110)
T ss_dssp T
T ss_pred C
Confidence 4
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=149.56 Aligned_cols=80 Identities=19% Similarity=0.405 Sum_probs=74.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-h-CCcccCCeeEEEEec
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-L-NGQMLGNRAIRLDFA 491 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l-~g~~~~gr~i~V~~a 491 (675)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++ +|+++|||||+|.+.++|.+||+ | |+..|+|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999997 89999999999999999999997 5 567899999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 31
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=6e-18 Score=159.87 Aligned_cols=84 Identities=17% Similarity=0.313 Sum_probs=78.5
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..++.++|||||+|.+.++|..||. ||+..|+|+.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQ----IYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3479999999999999998 78899999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.|+.+...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999986544
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=144.45 Aligned_cols=84 Identities=20% Similarity=0.472 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||.||+..|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567999999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87653
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.8e-17 Score=145.55 Aligned_cols=85 Identities=27% Similarity=0.408 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCC---eeEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN---RAIRL 488 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g---r~i~V 488 (675)
....++|||+|||+++++++|+++|..||.|..|+|+++.+++++|||||+|.+.++|.+||. ||+..|.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345799999999999999999999999999999999999999999999999999999999997 99999998 99999
Q ss_pred EeccccCCC
Q 045516 489 DFARERGAY 497 (675)
Q Consensus 489 ~~a~~~~~~ 497 (675)
.++......
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=143.94 Aligned_cols=83 Identities=24% Similarity=0.454 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|..||.|..|+|+.+.+++++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=147.32 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCC--eEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCc----ccCCee
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAE--VVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQ----MLGNRA 485 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~--I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~----~~~gr~ 485 (675)
....||||+|||+++|+++|+++|++||. |.+|+|++++ +|+++|||||+|.+.++|.+||+ |||. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 6799999998 89999999999999999999998 9987 489999
Q ss_pred EEEEeccc
Q 045516 486 IRLDFARE 493 (675)
Q Consensus 486 i~V~~a~~ 493 (675)
|.|.|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.5e-17 Score=139.39 Aligned_cols=79 Identities=32% Similarity=0.603 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
+++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. |||..|.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4799999999999999999999999999999999996 89999999999999999999998 999999999999999976
Q ss_pred c
Q 045516 494 R 494 (675)
Q Consensus 494 ~ 494 (675)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=141.99 Aligned_cols=83 Identities=35% Similarity=0.627 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+.+++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 357899999999999999999999999999999999997 79999999999999999999998 9999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77643
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=142.96 Aligned_cols=84 Identities=27% Similarity=0.451 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467999999999999999999999999999999999998 89999999999999999999996 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=141.08 Aligned_cols=81 Identities=36% Similarity=0.623 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+++++++|+++|+.||.|..|+|+++. +++++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999999997 89999999999999999999998 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 40
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.8e-18 Score=147.32 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
...++|||+|||+++|+++|+++|++||.|..|+|+++..|+++|||||+|.+.++|.+||.+|+..|.|+.|.|.++..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999998764
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=145.79 Aligned_cols=84 Identities=24% Similarity=0.430 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|++||..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3467999999999999999999999999999999999997 89999999999999999999998 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987653
No 42
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=1.9e-17 Score=140.19 Aligned_cols=79 Identities=27% Similarity=0.556 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|.+||.|..|+|+++. +|+++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4567999999999999999999999999999999999997 799999999999999999999998999999999999875
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=145.62 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hC------CcccCC
Q 045516 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LN------GQMLGN 483 (675)
Q Consensus 412 ~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~------g~~~~g 483 (675)
.....++|||+|||+++++++|+.+|..||.|..|+|+++. +++++|||||+|.+.++|.+||. || +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34568999999999999999999999999999999999997 79999999999999999999998 99 999999
Q ss_pred eeEEEEeccccCC
Q 045516 484 RAIRLDFARERGA 496 (675)
Q Consensus 484 r~i~V~~a~~~~~ 496 (675)
+.|+|.++..+..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987643
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=5e-17 Score=145.26 Aligned_cols=84 Identities=33% Similarity=0.594 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|++||..||.|..|+|+++. ++.++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999997 89999999999999999999997 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987654
No 45
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=2.3e-17 Score=147.48 Aligned_cols=84 Identities=23% Similarity=0.423 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|++||..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999997 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987654
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=144.96 Aligned_cols=84 Identities=26% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 412 ~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
.....++|||+|||+++++++|++||..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 35568999999999999999999999999999999999997 79999999999999999999998 99999999999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 997654
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=5.2e-18 Score=144.88 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=70.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVA--EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
.+|||+|||+++++++|+++|+.|| .|..|+|++++ +|+++|||||+|.+.++|.+||+ |||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999997 89999999999999999999997 99999999999999987
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=143.19 Aligned_cols=83 Identities=33% Similarity=0.604 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEE-EEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDV-RLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v-~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
...++|||+|||+++++++|+++|..||.|..| +|+++. ++.++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 999995 89999999999999999999998 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=144.77 Aligned_cols=83 Identities=34% Similarity=0.525 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+++|..||.|..|+|+.+. +|.++|||||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4567999999999999999999999999999999999997 79999999999999999999998 999999999999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+..+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97653
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=143.79 Aligned_cols=84 Identities=31% Similarity=0.476 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|++||.+||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567999999999999999999999999999999999998 89999999999999999999998 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 976643
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=1.8e-17 Score=139.62 Aligned_cols=79 Identities=29% Similarity=0.525 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+.+++++|+++|.+||.|..|+|+++. +++++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457999999999999999999999999999999999985 89999999999999999999996 9999999999999987
Q ss_pred c
Q 045516 492 R 492 (675)
Q Consensus 492 ~ 492 (675)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=145.82 Aligned_cols=99 Identities=19% Similarity=0.393 Sum_probs=82.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERG 495 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~ 495 (675)
++|||+|||+++++++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+||. ||+..|.|+.|+|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999976 79999999999999999998 99999999999999998765
Q ss_pred CCCCCCCCCCCCCccCCCCCCCceEEEEecCC
Q 045516 496 AYTPYSGGNESNSFQKGGRGQAAHTIFIKGFD 527 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp 527 (675)
...... ....+.....+|||+||+
T Consensus 77 ~~~~~~--------~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFD--------RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCC--------SCCCSCCCCSCCCSCCCC
T ss_pred CcccCC--------CCCccccCCCceecCCCC
Confidence 322111 011122336789999986
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=6e-18 Score=147.59 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCC-e
Q 045516 414 GGSKTLFVGNLPF------SVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN-R 484 (675)
Q Consensus 414 ~~~~tlfV~nLp~------~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g-r 484 (675)
+..++|||+|||+ .+++++|+++|++||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4468999999999 99999999999999999999999998 69999999999999999999997 99999999 9
Q ss_pred eEEEEecccc
Q 045516 485 AIRLDFARER 494 (675)
Q Consensus 485 ~i~V~~a~~~ 494 (675)
.|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998764
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=142.28 Aligned_cols=80 Identities=30% Similarity=0.449 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|+++|..||.|..|+|+++.+++++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 346799999999999999999999999999999999999889999999999999999999998 9999999999999987
Q ss_pred c
Q 045516 492 R 492 (675)
Q Consensus 492 ~ 492 (675)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=143.34 Aligned_cols=84 Identities=30% Similarity=0.592 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999987 78999999999999999999996 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 986643
No 56
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.7e-17 Score=143.36 Aligned_cols=84 Identities=30% Similarity=0.574 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeC-C-CCCcccEEEEEecCHHHHHHHHH-h-CCcccCCeeEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSD-A-DGRFKGYGHVEFASVEDAHKAIE-L-NGQMLGNRAIRL 488 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~-~-~g~~kG~afV~F~~~e~A~~Al~-l-~g~~~~gr~i~V 488 (675)
....++|||+|||+++++++|++||..||.|..|+|+++ . +++++|||||+|.+.++|.+||. | |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999999998 4 89999999999999999999998 8 999999999999
Q ss_pred EeccccCC
Q 045516 489 DFARERGA 496 (675)
Q Consensus 489 ~~a~~~~~ 496 (675)
.++..+..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987643
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=2.9e-17 Score=141.94 Aligned_cols=81 Identities=27% Similarity=0.635 Sum_probs=76.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
+++|||+|||+.+++++|+++|+.||.|..|+|+.+. +|+++|||||+|.+.++|.+||. |||..|.|+.|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5899999999999999999999999999999999997 79999999999999999999997 999999999999999987
Q ss_pred cCC
Q 045516 494 RGA 496 (675)
Q Consensus 494 ~~~ 496 (675)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 643
No 58
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=140.68 Aligned_cols=81 Identities=30% Similarity=0.404 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4467999999999999999999999999999999999997 78999999999999999999998 999999999999999
Q ss_pred ccc
Q 045516 491 ARE 493 (675)
Q Consensus 491 a~~ 493 (675)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 853
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=142.21 Aligned_cols=83 Identities=25% Similarity=0.491 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||..||.|..|+|+.+ ++.++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346799999999999999999999999999999999999 89999999999999999999998 9999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87653
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=141.50 Aligned_cols=80 Identities=26% Similarity=0.510 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEE--------EEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD--------VRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
....++|||+|||+++++++|+++|+.||.|.. |+|++++ +|+++|||||+|.+.++|.+||. |||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456799999999999999999999999999999 9999996 89999999999999999999997 9999999
Q ss_pred CeeEEEEecc
Q 045516 483 NRAIRLDFAR 492 (675)
Q Consensus 483 gr~i~V~~a~ 492 (675)
|+.|+|.++.
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999873
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=140.23 Aligned_cols=80 Identities=29% Similarity=0.471 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+++|..||.|..|+|+.+. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4567899999999999999999999999999999999997 68999999999999999999997 999999999999998
Q ss_pred cc
Q 045516 491 AR 492 (675)
Q Consensus 491 a~ 492 (675)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 62
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=8.4e-17 Score=176.67 Aligned_cols=82 Identities=22% Similarity=0.470 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.||+++|..||..||.|..|.|+.+. +|.++|||||+|.+.++|.+||. |||+.|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999996 89999999999999999999997 999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8643
No 63
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=144.20 Aligned_cols=84 Identities=27% Similarity=0.483 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3467999999999999999999999999999999999986 89999999999999999999997 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987643
No 64
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=145.01 Aligned_cols=82 Identities=29% Similarity=0.472 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
....++|||+|||+.+++++|++||..|| |+.|+|+++.+++++|||||+|.+.++|.+||.+|+..|.||.|.|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45678999999999999999999999999 45999999999999999999999999999999999999999999999887
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=145.20 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
...++|||+|||+++++++|+++|+.||.|..|.|+.+.+|+++|||||+|.+.++|.+||. |||..|.|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999997 99999999999999998
Q ss_pred ccCC
Q 045516 493 ERGA 496 (675)
Q Consensus 493 ~~~~ 496 (675)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=144.38 Aligned_cols=82 Identities=35% Similarity=0.649 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4577999999999999999999999999999999999986 79999999999999999999997 999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+..+
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8765
No 67
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-17 Score=140.48 Aligned_cols=83 Identities=31% Similarity=0.581 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||..||.|..|+|+++..+ ++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456799999999999999999999999999999999988754 89999999999999999997 9999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 87643
No 68
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=142.37 Aligned_cols=82 Identities=30% Similarity=0.487 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||..||.|..|+|+++.+++++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345789999999999999999999999999999999999999999999999999999999998 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 754
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=5.2e-17 Score=142.24 Aligned_cols=82 Identities=37% Similarity=0.710 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||..|| |..|+|+++. +++++|||||+|.+.++|.+||.||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34579999999999999999999999997 9999999998 799999999999999999999999999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=141.89 Aligned_cols=84 Identities=30% Similarity=0.530 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhh-CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcc-cCCeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSE-VAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQM-LGNRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~-~~gr~i~V~ 489 (675)
....++|||+|||+++++++|+++|.. ||.|..|+|+++.+|+++|||||+|.+.++|.+||. ||+.. |.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 356789999999999999999999999 999999999999999999999999999999999998 99999 999999999
Q ss_pred eccccCC
Q 045516 490 FARERGA 496 (675)
Q Consensus 490 ~a~~~~~ 496 (675)
++..+..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=140.04 Aligned_cols=82 Identities=24% Similarity=0.467 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|++||..||.|..|+|+++..+ ++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 456799999999999999999999999999999999998644 69999999999999999998 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 8754
No 72
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=4.6e-17 Score=144.28 Aligned_cols=83 Identities=29% Similarity=0.450 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+.+|..||.|..|+|+.+. +|.++|||||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567999999999999999999999999999999999987 89999999999999999999998 999999999999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97654
No 73
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=143.53 Aligned_cols=82 Identities=28% Similarity=0.420 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD-VRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|++||..||.|.. |+|+++.+|+++|||||+|.+.++|.+||.+|+..|+||.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 456799999999999999999999999999998 9999888999999999999999999999988999999999999988
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 74
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.1e-17 Score=137.60 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
....++|||+|||+++++++|++||..| .|..|+|+++.+|+++|||||+|.+.++|.+||.||+..|.|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4567999999999999999999999999 999999999989999999999999999999999999999999999999987
Q ss_pred cc
Q 045516 493 ER 494 (675)
Q Consensus 493 ~~ 494 (675)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 75
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=6.7e-17 Score=142.44 Aligned_cols=80 Identities=31% Similarity=0.490 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|++||..||.|..|+|+++.+|+++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456799999999999999999999999999999999999999999999999999999999998 9999999999999987
Q ss_pred c
Q 045516 492 R 492 (675)
Q Consensus 492 ~ 492 (675)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 76
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=145.63 Aligned_cols=81 Identities=32% Similarity=0.459 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
..+.++|||+|||+++++++|++||+.| .|..|+|+++.+|+++|||||+|.+.++|.+||.||+..|+||.|.|..+.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 3456899999999999999999999999 899999999989999999999999999999999999999999999998886
Q ss_pred cc
Q 045516 493 ER 494 (675)
Q Consensus 493 ~~ 494 (675)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=141.00 Aligned_cols=82 Identities=28% Similarity=0.497 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeE-EEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCee----
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVV-DVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRA---- 485 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~---- 485 (675)
....++|||+|||+++++++|+++|.+||.|. .|+|++++ +++++|||||+|.+.++|.+||. |||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34679999999999999999999999999999 99999997 89999999999999999999998 9999999999
Q ss_pred EEEEecccc
Q 045516 486 IRLDFARER 494 (675)
Q Consensus 486 i~V~~a~~~ 494 (675)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998754
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6e-17 Score=140.35 Aligned_cols=82 Identities=28% Similarity=0.539 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCC--C--CcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDAD--G--RFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--g--~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
.+.++|||+|||+++++++|+++|..||.|..|+|+++.. | +++|||||+|.+.++|.+||. ||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998763 4 889999999999999999998 9999999999999
Q ss_pred EeccccC
Q 045516 489 DFARERG 495 (675)
Q Consensus 489 ~~a~~~~ 495 (675)
.++....
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997654
No 79
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-17 Score=148.42 Aligned_cols=82 Identities=33% Similarity=0.467 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
...++|||+|||+++++++|++||..||.|..|+|+.+. +++++|||||+|.+.++|.+||.||+..|.|+.|+|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 456899999999999999999999999999999999998 6999999999999999999999999999999999999997
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
.+.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 80
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=5.2e-17 Score=137.98 Aligned_cols=79 Identities=22% Similarity=0.483 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecccc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~~ 494 (675)
.++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||.||+..|.|+.|+|.++...
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 5899999999999999999999999999999999997 899999999999999999999999999999999999998653
No 81
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=147.60 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCe-EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEV-VDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|++||..||.| ..|+|+++.+|+++|||||+|.+.++|.+||.+|+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 4567999999999999999999999999999 899999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 82
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=140.29 Aligned_cols=79 Identities=18% Similarity=0.398 Sum_probs=75.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|||+|||+.+++++ |+++|..||.|..|+|+++..+|.++|||||+|.+.++|.+||. |||..|+|+.|+|.
T Consensus 19 gt~lfV~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDE----LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 57899999999999998 77889999999999999999999999999999999999999998 99999999999999
Q ss_pred cccc
Q 045516 597 EAKQ 600 (675)
Q Consensus 597 ~a~~ 600 (675)
|++|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9976
No 83
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.4e-17 Score=142.59 Aligned_cols=84 Identities=27% Similarity=0.450 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|++||..||.|..|+|++++ +++++|||||+|.+.++|.+||.+|+..|.|+.|+|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 4567999999999999999999999999999999999996 899999999999999999999988999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 76653
No 84
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=7.3e-17 Score=141.92 Aligned_cols=83 Identities=25% Similarity=0.446 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCccc---CCeeEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQML---GNRAIR 487 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~---~gr~i~ 487 (675)
....++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..| .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4567999999999999999999999999999999999987 79999999999999999999997 999988 899999
Q ss_pred EEeccccC
Q 045516 488 LDFARERG 495 (675)
Q Consensus 488 V~~a~~~~ 495 (675)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997654
No 85
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=153.61 Aligned_cols=80 Identities=23% Similarity=0.485 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVA--EVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
..++|||+|||+++++++|++||..|| .|..|+|++++ +|+++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999997 89999999999999999999998 899999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 86
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.2e-17 Score=141.58 Aligned_cols=81 Identities=35% Similarity=0.678 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-C-CCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-D-GRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~-g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+++++++|++||..|| |..|+|+++. + ++++|||||+|.+.++|.+||.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4569999999999999999999999999 9999999998 4 89999999999999999999999999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 92 ~~~~ 95 (104)
T 1wi8_A 92 DQAQ 95 (104)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 87
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=9.3e-17 Score=137.39 Aligned_cols=82 Identities=33% Similarity=0.536 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|.+||.|..|+|+++ +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346799999999999999999999999999999999984 78899999999999999999998 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7653
No 88
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.3e-17 Score=143.69 Aligned_cols=84 Identities=23% Similarity=0.417 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeE--------EEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVV--------DVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
....++|||+|||+.+++++|++||..||.|. .|+|+.++ +++++|||||+|.+.++|.+||. ||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45679999999999999999999999999999 69999995 89999999999999999999998 9999999
Q ss_pred CeeEEEEeccccCC
Q 045516 483 NRAIRLDFARERGA 496 (675)
Q Consensus 483 gr~i~V~~a~~~~~ 496 (675)
|+.|+|.++..+..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987643
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=7.5e-17 Score=146.54 Aligned_cols=86 Identities=33% Similarity=0.502 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 412 ~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
.....++|||+|||+.+++++|+.||..||.|..|+|+.+. ++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34568999999999999999999999999999999999997 89999999999999999999997 99999999999999
Q ss_pred eccccCCC
Q 045516 490 FARERGAY 497 (675)
Q Consensus 490 ~a~~~~~~ 497 (675)
++......
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876543
No 90
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=147.40 Aligned_cols=86 Identities=26% Similarity=0.491 Sum_probs=79.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 411 PQSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 411 ~~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
+.....++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 335667999999999999999999999999999999999997 78999999999999999999998 9999999999999
Q ss_pred EeccccCC
Q 045516 489 DFARERGA 496 (675)
Q Consensus 489 ~~a~~~~~ 496 (675)
.++.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3.3e-17 Score=147.36 Aligned_cols=82 Identities=28% Similarity=0.415 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCC---eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAE---VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~ 489 (675)
....++|||+|||+++|+++|++||..||. |..|+|+++..|+++|||||+|.+.++|.+||.||+..|.||.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 456789999999999999999999999999 89999999988999999999999999999999999999999999999
Q ss_pred ecccc
Q 045516 490 FARER 494 (675)
Q Consensus 490 ~a~~~ 494 (675)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88643
No 92
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.7e-17 Score=138.73 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQ----NFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
...++|||+|||+++++++|+ ++|.+||.|..|+|+++..+ +|||||+|.+.++|.+||. |||..|.|+.|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 456899999999999999999 99999999999999988755 8999999999999999998 9999999999999
Q ss_pred EeccccC
Q 045516 489 DFARERG 495 (675)
Q Consensus 489 ~~a~~~~ 495 (675)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997653
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=3e-17 Score=134.94 Aligned_cols=74 Identities=28% Similarity=0.491 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
+|||+|||+++++++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||+||+..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999997 899999999999999999999999999999999999875
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=142.03 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|++||..||.|..|+|+++. +++++|||||+|.+.++|.+||. ||+ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4567999999999999999999999999999999999997 79999999999999999999998 887 89999999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97543
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=144.32 Aligned_cols=82 Identities=22% Similarity=0.469 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+++++++|++||..||.|..|+|+++. +++++|||||+|.+.++|.+||.+|+..|.|+.|+|.++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 45899999999999999999999999999999999997 79999999999999999999998899999999999999987
Q ss_pred cCC
Q 045516 494 RGA 496 (675)
Q Consensus 494 ~~~ 496 (675)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 96
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=6e-17 Score=145.42 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|++||..||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|+|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3467999999999999999999999999999999999986 79999999999999999999998 999999999999998
Q ss_pred cc
Q 045516 491 AR 492 (675)
Q Consensus 491 a~ 492 (675)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 97
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1e-16 Score=142.04 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 4567999999999999999999999999999999999997 799999999999999999999995579999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 98
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.8e-17 Score=140.91 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN--GQMLGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~--g~~~~gr~i~V~~ 490 (675)
...++|||+|||+.+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|..||. |+ +..|.|++|+|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45689999999999999999999999999999999975 8999999999999999998 75 4789999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976643
No 99
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.4e-16 Score=142.29 Aligned_cols=80 Identities=19% Similarity=0.423 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..+++|||+|||+.+++++|+.+|+.||.|..|+|+++ +.++|||||+|.+.++|.+||. |||..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35689999999999999999999999999999999965 5569999999999999999998 99999999999999997
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 653
No 100
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2e-16 Score=143.47 Aligned_cols=86 Identities=28% Similarity=0.429 Sum_probs=79.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 412 ~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
.....++|||+|||+.+++++|+++|..||.|..|+|+.+.+|+++|||||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccccCCC
Q 045516 491 ARERGAY 497 (675)
Q Consensus 491 a~~~~~~ 497 (675)
+......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9765443
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=7.8e-17 Score=136.50 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCC-cccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGR-FKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~-~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
..++|||+|||+++++++|+++|..||.|..|+|+.+. ++. ++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999999887 344 89999999999999999998 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 102
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.5e-16 Score=151.81 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=79.3
Q ss_pred EEecCHHHHHHHHH-hCCcccC--CeeEEEEeccccC--CCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHH
Q 045516 462 VEFASVEDAHKAIE-LNGQMLG--NRAIRLDFARERG--AYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536 (675)
Q Consensus 462 V~F~~~e~A~~Al~-l~g~~~~--gr~i~V~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~ 536 (675)
.+|.+.+++..++. |++..+. |+.+.+.+..... .+.....................++|||+|||+.+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~-- 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE-- 88 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH--
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH--
Confidence 78999999999997 8887765 7776665532211 000000000000111122344578999999999999998
Q ss_pred HHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 537 ~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
|+.+|..||.|..|.|+.+..+|.++|||||+|.+.+.|..||. |||..|+|+.|.|.|+.++...
T Consensus 89 --L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 89 --IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp --HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred --HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 78899999999999999999999999999999999999999998 9999999999999999876654
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=142.94 Aligned_cols=81 Identities=36% Similarity=0.679 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC--CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA--DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|++||..|| |..|+|+++. +|+++|||||+|.+.++|.+||.|||..|.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45689999999999999999999999999 9999999986 79999999999999999999999999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+..+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 104
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=137.81 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||..||.|..|+|+++. +++++|||||+|.+.++|.+||. +++.|.|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 3457899999999999999999999999999999999997 79999999999999999999998 577999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87643
No 105
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=1.1e-16 Score=146.27 Aligned_cols=82 Identities=32% Similarity=0.469 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|+++|..||.|..|+|+++. +++++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999997 78999999999999999999998 999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8764
No 106
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=138.92 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||.+||.|..|+|+. ++.++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45679999999999999999999999999999999965 45689999999999999999996 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7654
No 107
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=141.27 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCe-
Q 045516 413 SGGSKTLFVGNLPFSV------EQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNR- 484 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr- 484 (675)
....++|||+|||+.+ ++++|+.+|++||.|..|+|+ ..+|+++|||||+|.+.++|.+||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 4557899999999999 889999999999999999998 4589999999999999999999998 999999998
Q ss_pred eEEEEeccccC
Q 045516 485 AIRLDFARERG 495 (675)
Q Consensus 485 ~i~V~~a~~~~ 495 (675)
.|+|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999987543
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=141.48 Aligned_cols=81 Identities=38% Similarity=0.683 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+.+++++|+++|..||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999997 89999999999999999999997 99999999999999997
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 109
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=5e-17 Score=149.67 Aligned_cols=82 Identities=27% Similarity=0.404 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCC---eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAE---VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~ 489 (675)
....++|||+|||+++|+++|++||+.||. |..|+|+++..|+++|||||+|.+.++|.+||.||+..|.||.|.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 456789999999999999999999999999 89999999988999999999999999999999999999999999999
Q ss_pred ecccc
Q 045516 490 FARER 494 (675)
Q Consensus 490 ~a~~~ 494 (675)
++...
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 88543
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.2e-17 Score=140.51 Aligned_cols=78 Identities=9% Similarity=0.188 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCc--ccCCeeEEE
Q 045516 413 SGGSKTLFVGNLPF-SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQ--MLGNRAIRL 488 (675)
Q Consensus 413 ~~~~~tlfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~--~~~gr~i~V 488 (675)
...+++|||+|||+ .+++++|+++|.+||.|.+|+|+++ +|||||+|.+.++|..||. ||+. .|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 34678999999999 9999999999999999999999865 6999999999999999997 8754 599999999
Q ss_pred EeccccC
Q 045516 489 DFARERG 495 (675)
Q Consensus 489 ~~a~~~~ 495 (675)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998644
No 111
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-17 Score=138.22 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+++++++|+++|..||.|..|+|+.+. +++++|||||+|.+.++|.+||. |||..|.|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999997 89999999999999999999998 9999999999988765
Q ss_pred c
Q 045516 492 R 492 (675)
Q Consensus 492 ~ 492 (675)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.2e-16 Score=144.72 Aligned_cols=81 Identities=22% Similarity=0.462 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+++++++|++||.+||.|..|+|+++. +|.++|||||+|.+.++|.+||.|||..|.|+.|+|.++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35899999999999999999999999999999999986 89999999999999999999999999999999999999875
Q ss_pred cC
Q 045516 494 RG 495 (675)
Q Consensus 494 ~~ 495 (675)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 113
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=135.20 Aligned_cols=85 Identities=31% Similarity=0.547 Sum_probs=79.4
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
+.++|||+|||..+++++ |+++|..||.|..|.|+++..++.++|||||+|.+.++|.+||. ||+..|+|+.|+|
T Consensus 4 ~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDM----LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 478999999999999998 78899999999999999999999999999999999999999998 9999999999999
Q ss_pred eccccCCCCC
Q 045516 596 DEAKQRGDFG 605 (675)
Q Consensus 596 ~~a~~r~~~~ 605 (675)
.++.++...+
T Consensus 80 ~~a~~~~~~~ 89 (95)
T 2dnz_A 80 GHVTERLDGG 89 (95)
T ss_dssp EESSCCCCCC
T ss_pred EEcccccCCC
Confidence 9998766543
No 114
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.6e-16 Score=144.44 Aligned_cols=85 Identities=25% Similarity=0.460 Sum_probs=79.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |..+|..||.|..|.|+.+..+|.++|||||+|.+.++|..||. |||..|+|+.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEED----IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp SSSEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4478999999999999998 77889999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.|+.++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999877654
No 115
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=148.11 Aligned_cols=82 Identities=16% Similarity=0.345 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEE--EEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCc----ccCCe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD--VRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQ----MLGNR 484 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~--v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~----~~~gr 484 (675)
....++|||+|||+++++++|+++|..||.|.. |+|++++ +|+++|||||+|.+. +|.+||. |||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999976 9999998 999999999999999 9999997 9999 99999
Q ss_pred eEEEEeccccC
Q 045516 485 AIRLDFARERG 495 (675)
Q Consensus 485 ~i~V~~a~~~~ 495 (675)
.|+|.++....
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 116
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.4e-17 Score=139.43 Aligned_cols=81 Identities=25% Similarity=0.378 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+++++++|++||..||.|..|.|+.+. +|+++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999988877775 89999999999999999999996 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 644
No 117
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.9e-17 Score=147.08 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCe----EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEV----VDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLD 489 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~ 489 (675)
...++|||+||||++|+++|++||+.||.| ..|+|+++.+|+++|||||+|.+.++|.+||.+|+..|.||.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 346899999999999999999999999986 6899999999999999999999999999999989999999999998
Q ss_pred eccc
Q 045516 490 FARE 493 (675)
Q Consensus 490 ~a~~ 493 (675)
++..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 118
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=1.8e-16 Score=151.24 Aligned_cols=85 Identities=28% Similarity=0.446 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 412 QSGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 412 ~~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
.....++|||+|||+.+++++|+.||..||.|..|+|+.+. +|.++|||||+|.+.++|.+||. |||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999996 89999999999999999999997 99999999999999
Q ss_pred eccccCC
Q 045516 490 FARERGA 496 (675)
Q Consensus 490 ~a~~~~~ 496 (675)
|+.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9987653
No 119
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.4e-16 Score=133.37 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
.+..|||+||++.+|+++|+++|.+||+|.+++|.. ++|||||+|.+.++|.+||. ||+..|.||.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467999999999999999999999999999999975 59999999999999999998 99999999999999884
No 120
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=145.11 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=78.7
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQ----LRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp TTTSEEEEESCSTTCCHHH----HHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4478999999999999998 77888899999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.++.++..+
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 121
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=5.6e-17 Score=139.63 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
..++|||+|||+.+++++|++||.+||.|..|+|+.+. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999988888776 88999999999999999999998 99999999999999875
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=136.83 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcc--cCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQM--LGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~--~~gr~i~V~~ 490 (675)
..+++|||+|||+.+++++|+.+|++||.|.+|+|++ .+|||||+|.+.++|.+||. ||+.. |.|++|+|.|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 4578999999999999999999999999999999985 48999999999999999997 88875 7899999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+..+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9754
No 123
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-17 Score=144.22 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCC---eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAE---VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~ 489 (675)
....++|||+|||+++++++|++||..||. |..|+|+++..|+++|||||+|.+.++|.+||.||+..|+||.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 456799999999999999999999999998 99999999988999999999999999999999999999999999999
Q ss_pred ecccc
Q 045516 490 FARER 494 (675)
Q Consensus 490 ~a~~~ 494 (675)
++...
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 88653
No 124
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=138.82 Aligned_cols=82 Identities=22% Similarity=0.516 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCccc--------CC
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQML--------GN 483 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~--------~g 483 (675)
....++|||+|||+++++++|+++|..||.|..|+|+++.++.++|||||+|.+.++|.+||. |||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 346789999999999999999999999999999999999999999999999999999999998 999999 57
Q ss_pred eeEEEEecccc
Q 045516 484 RAIRLDFARER 494 (675)
Q Consensus 484 r~i~V~~a~~~ 494 (675)
++|.|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999988643
No 125
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-16 Score=133.73 Aligned_cols=86 Identities=22% Similarity=0.369 Sum_probs=79.9
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEED----LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3479999999999999998 77889999999999999999899999999999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 82 V~~a~~~~~~~ 92 (99)
T 1whw_A 82 VLPSTIKKEAS 92 (99)
T ss_dssp EEECCCCSTTC
T ss_pred EEEcCCCcccc
Confidence 99999876653
No 126
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.3e-16 Score=133.80 Aligned_cols=86 Identities=26% Similarity=0.452 Sum_probs=80.2
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V 595 (675)
...++|||+|||..+++++ |+++|..||.|..|.|+++..++.++|||||+|.+.++|.+||.||+..|+|+.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETE----LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHH----HHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 3479999999999999998 788999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCC
Q 045516 596 DEAKQRGDFG 605 (675)
Q Consensus 596 ~~a~~r~~~~ 605 (675)
.++.++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9998776554
No 127
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=140.53 Aligned_cols=81 Identities=31% Similarity=0.580 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|+.||.|..|+|+++.. .++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45679999999999999999999999999999999998864 489999999999999999998 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=136.78 Aligned_cols=80 Identities=39% Similarity=0.672 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||.+||.| +|+.+.+++++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567999999999999999999999999977 56666789999999999999999999998 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7764
No 129
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.6e-16 Score=135.96 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCC--cccCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNG--QMLGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g--~~~~gr~i~V~~ 490 (675)
..+++|||+|||+.+++++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||. ||+ ..|.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45789999999999999999999999999999999864 8999999999999999997 765 459999999999
Q ss_pred ccccCCC
Q 045516 491 ARERGAY 497 (675)
Q Consensus 491 a~~~~~~ 497 (675)
+..+...
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9876543
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=138.14 Aligned_cols=83 Identities=28% Similarity=0.380 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCC-eEEEEEe-eCC-CCCcccEEEEEecCHHHHHHHHH-hC--CcccCCeeEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAE-VVDVRLS-SDA-DGRFKGYGHVEFASVEDAHKAIE-LN--GQMLGNRAIR 487 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~-~~~-~g~~kG~afV~F~~~e~A~~Al~-l~--g~~~~gr~i~ 487 (675)
...++|||+|||+++++++|+++|..||. |..|+|+ .+. +|+++|||||+|.+.++|.+||. || +..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 565 78999999999999999999998 86 5899999999
Q ss_pred EEeccccCC
Q 045516 488 LDFARERGA 496 (675)
Q Consensus 488 V~~a~~~~~ 496 (675)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 131
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=131.63 Aligned_cols=77 Identities=26% Similarity=0.501 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|.+||.|..|+|+ +|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3467999999999999999999999999999999998 7899999999999999997 9999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.8e-17 Score=132.39 Aligned_cols=74 Identities=23% Similarity=0.475 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
++|||+|||+++++++|+++|++||.|..|+|++++ +|+++|||||+|.+.++|.+||. +| ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999997 79999999999999999999998 77 9999999999886
No 133
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=136.21 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h--CCcccCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-L--NGQMLGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l--~g~~~~gr~i~V~~ 490 (675)
..+++|||+|||+.+++++|+++|.+||.|..|+|+++ +|||||+|.+.++|..||. | ++..|.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 45689999999999999999999999999999999864 8999999999999999997 5 57789999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 88 a~~~~~ 93 (101)
T 2cq1_A 88 SNHKEL 93 (101)
T ss_dssp CSCSSC
T ss_pred cCcccC
Confidence 986643
No 134
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=133.29 Aligned_cols=86 Identities=30% Similarity=0.445 Sum_probs=80.5
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETD----LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp SSSEEEEEESCCTTCCHHH----HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4479999999999999998 88999999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|+.++...+
T Consensus 89 v~~a~~~~~~~ 99 (103)
T 2cq0_A 89 VEWAKPSTNSG 99 (103)
T ss_dssp EEESSCCCCSC
T ss_pred EEECCCCCCCC
Confidence 99998876554
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=6.8e-17 Score=132.71 Aligned_cols=74 Identities=22% Similarity=0.421 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
+|||+|||+++++++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999987 799999999999999999999999999999999999874
No 136
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=142.55 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQ----NFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
....++|||+|||+.+++++|+ ++|++||.|..|.|.. +++++|||||+|.+.++|..||. |||..|.|+.|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457899999999999999876 7999999999998854 67899999999999999999997 999999999999
Q ss_pred EEeccccC
Q 045516 488 LDFARERG 495 (675)
Q Consensus 488 V~~a~~~~ 495 (675)
|.|+..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99997654
No 137
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=133.61 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=67.4
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCe-eEE
Q 045516 416 SKTLFVGNLPFSV------EQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNR-AIR 487 (675)
Q Consensus 416 ~~tlfV~nLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr-~i~ 487 (675)
+++|||+|||+.+ ++++|+++|++||.|..|+|+ ..+|+++|||||+|.+.++|.+||. |||..|.|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3799999999999 789999999999999999988 4588999999999999999999998 999999999 887
Q ss_pred E
Q 045516 488 L 488 (675)
Q Consensus 488 V 488 (675)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 138
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=145.25 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD-VRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|++||..||.|.. +.|+.+.+|+++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 446789999999999999999999999999988 4455555999999999999999999999999999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=139.36 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN--GQMLGNRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~--g~~~~gr~i~V~~ 490 (675)
..+++|||+|||+.+++++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||. |+ +..|.|++|+|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 35689999999999999999999999999999999975 8999999999999999997 76 4689999999999
Q ss_pred ccccCCC
Q 045516 491 ARERGAY 497 (675)
Q Consensus 491 a~~~~~~ 497 (675)
+..+...
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9876543
No 140
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.2e-16 Score=135.88 Aligned_cols=78 Identities=26% Similarity=0.364 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCC-----eeE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN-----RAI 486 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g-----r~i 486 (675)
....++|||+|||+++++++|++||..||.|..|+|+.+ |||||+|.+.++|.+||. ||+..|.| +.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 456799999999999999999999999999999999975 999999999999999998 99999999 999
Q ss_pred EEEeccccCC
Q 045516 487 RLDFARERGA 496 (675)
Q Consensus 487 ~V~~a~~~~~ 496 (675)
+|.++..+..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987643
No 141
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.3e-16 Score=144.64 Aligned_cols=81 Identities=30% Similarity=0.492 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeE--EEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVV--DVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~--~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~ 490 (675)
....++|||+||||++|+++|++||+.| .|+ .|+|++++.|+++|||||+|.+.++|.+||.+++..|.||.|.|.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 4567899999999999999999999999 677 9999999889999999999999999999999888999999999988
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+...
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7543
No 142
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=133.95 Aligned_cols=85 Identities=29% Similarity=0.500 Sum_probs=78.9
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEE-EecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRI-SVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v-~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
+.++|||+|||..+++++ |+.+|..||.|..| +|+++..+|.++|||||+|.+.++|..||. ||+..|+|+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKL----LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHH----HHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 479999999999999998 77889999999999 999998999999999999999999999999 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++...+
T Consensus 80 v~~a~~~~~~~ 90 (96)
T 1x5t_A 80 VSYAFKKDSKG 90 (96)
T ss_dssp EEESCCCCCCC
T ss_pred EEEecccCCCC
Confidence 99998766543
No 143
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=5.4e-16 Score=146.57 Aligned_cols=83 Identities=27% Similarity=0.481 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999997 89999999999999999999997 999999999999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+....
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 97654
No 144
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.5e-15 Score=132.85 Aligned_cols=85 Identities=26% Similarity=0.433 Sum_probs=78.7
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V 595 (675)
.+.++|||+|||+.+++++ |+++|..|| |..|+|+++..+|+++|||||+|.+.++|.+||.||+..|+|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGD----IDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHH----HHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCeEEEEeCCCCCCCHHH----HHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 4479999999999999998 788999997 99999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCC
Q 045516 596 DEAKQRGDFG 605 (675)
Q Consensus 596 ~~a~~r~~~~ 605 (675)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dng_A 88 DIAEGRKQDK 97 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEecCCCCCC
Confidence 9998765543
No 145
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.9e-16 Score=131.13 Aligned_cols=77 Identities=23% Similarity=0.409 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|+.||.|..|+|+ ++||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4567999999999999999999999999999999998 5599999999999999997 9999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87643
No 146
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=136.59 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=77.2
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.++|||+||++.+++++ |+++|.+||.|..|.|+++..||+++|||||+|.+.++|.+||. |||..|+|+.|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~----L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETF----LKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEECCCCCCCHHH----HHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3478999999999999998 78899999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccC
Q 045516 595 VDEAKQR 601 (675)
Q Consensus 595 V~~a~~r 601 (675)
|.++..+
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9998654
No 147
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=133.54 Aligned_cols=85 Identities=27% Similarity=0.467 Sum_probs=78.9
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCC-CCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDT-GSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~t-G~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~ 594 (675)
.+.++|||+|||+.+++++ |+.+|..|| |..|+|+++..+ |+++|||||+|.+.+.|.+||.||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEES----IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHH----HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCEEEEeCCCCcCCHHH----HHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 3479999999999999998 788999999 999999999988 9999999999999999999999999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99998866543
No 148
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=135.67 Aligned_cols=83 Identities=13% Similarity=0.350 Sum_probs=75.5
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccC-cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-h-CCceeCCeeeE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCG-EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-M-SGTEIGGYSLV 594 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G-~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-l-ng~~~~Gr~l~ 594 (675)
+++|||+|||+.+++++ |+++|..|| .|..|+|++++.+|.++|||||+|.+.++|.+||+ | |+..|+|+.|+
T Consensus 1 S~~i~v~nLp~~~te~~----l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDD----IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHH----HHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 47899999999999999 678888889 89999999999999999999999999999999998 6 56689999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.|+.++...
T Consensus 77 V~~a~~~~~~ 86 (91)
T 2lxi_A 77 MHYSDPKPKI 86 (91)
T ss_dssp EECCCSCCCC
T ss_pred EEEcCCCCCC
Confidence 9999887544
No 149
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-15 Score=134.49 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=76.5
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
....++|||+|||..+++++ |+++|..||.|..|+|+++..++.++|||||+|.+.++|.+||. ||+ .|+|+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDAS----LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHH----HHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 34579999999999999998 77889999999999999999999999999999999999999999 887 8999999
Q ss_pred EEeccccCC
Q 045516 594 VVDEAKQRG 602 (675)
Q Consensus 594 ~V~~a~~r~ 602 (675)
+|.++.+..
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999997643
No 150
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=6.4e-17 Score=137.88 Aligned_cols=78 Identities=31% Similarity=0.531 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecccc
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~ 494 (675)
++|||+|||+++++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.+ |.+|+. |||..|.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999999999999999999999999997 7999999999999999 999998 9999999999999999765
Q ss_pred C
Q 045516 495 G 495 (675)
Q Consensus 495 ~ 495 (675)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 151
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-16 Score=140.21 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHH---HHhhhCCCeEEEEEeeCC-C---CCcccEEEEEecCHHHHHHHHH-hCCcccCCe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQ---NFFSEVAEVVDVRLSSDA-D---GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNR 484 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~~~-~---g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr 484 (675)
....++|||+|||+.+++++|+ ++|.+||.|..|+|+++. + ++++|||||+|.+.++|.+||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999886 3 3567999999999999999998 999999999
Q ss_pred eEEEEeccccC
Q 045516 485 AIRLDFARERG 495 (675)
Q Consensus 485 ~i~V~~a~~~~ 495 (675)
.|+|.++..+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998764
No 152
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=133.90 Aligned_cols=86 Identities=24% Similarity=0.406 Sum_probs=79.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..++.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPL----LWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CTTTEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3479999999999999998 77899999999999999999899999999999999999999998 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99998766543
No 153
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9e-16 Score=130.82 Aligned_cols=76 Identities=25% Similarity=0.500 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+.+|.+||.|..|+|+ ++||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999998 5699999999999999998 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 154
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=2.3e-16 Score=145.41 Aligned_cols=83 Identities=27% Similarity=0.481 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|+++|+.||.|..|+|+.+. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999987 89999999999999999999997 999999999999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+....
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97653
No 155
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=2.7e-16 Score=144.87 Aligned_cols=124 Identities=18% Similarity=0.297 Sum_probs=79.6
Q ss_pred cEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHHH
Q 045516 458 GYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQVR 536 (675)
Q Consensus 458 G~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i~ 536 (675)
-|+|++|.+...+..||. ++|....|+.. +.+..+ .......++|||+|||..+++++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~------------------~~~~~~~~~l~V~nLp~~~te~~-- 63 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP------------------PPDVEGMTSLKVDNLTYRTSPDT-- 63 (135)
T ss_dssp -------------------------------CCSCCS------------------CSSGGGCCCEEEECCCSSCHHHH--
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC------------------CCCCCCCCEEEEeCCCCCCCHHH--
Confidence 366777778888888887 88777666541 111111 11122368999999999999998
Q ss_pred HHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 537 ASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 537 ~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
|+.+|..||.|..|.|+++..++.++|||||+|.+.++|.+||. ||+..|+|+.|+|.|+++....
T Consensus 64 --L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 64 --LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp --HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred --HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 77899999999999999999999999999999999999999998 9999999999999999875543
No 156
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=4.6e-15 Score=132.42 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=79.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTED----IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp TTCEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3479999999999999998 77899999999999999998899999999999999999999998 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|+.++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998776543
No 157
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=131.11 Aligned_cols=85 Identities=14% Similarity=0.235 Sum_probs=79.1
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|||+|||+.+++++|+.+|+.+|..||.|..|+|+++..+ +|||||+|.+.++|.+||. |||..|+|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 36899999999999999999999999999999999999998765 8999999999999999998 9999999999999
Q ss_pred eccccCCCC
Q 045516 596 DEAKQRGDF 604 (675)
Q Consensus 596 ~~a~~r~~~ 604 (675)
.+++++...
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 158
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.7e-16 Score=134.35 Aligned_cols=86 Identities=27% Similarity=0.511 Sum_probs=79.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+++|..||.|..|.|+++..++.++|||||+|.+.++|..||. ||+..|+|+.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQS----LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHH----HHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4479999999999999998 77888889999999999999999999999999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 86 v~~a~~~~~~~ 96 (102)
T 1x5s_A 86 VDQAGKSSDNR 96 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998776543
No 159
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=142.50 Aligned_cols=79 Identities=29% Similarity=0.518 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+++|..||.|..|+|++++ +++++|||||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3467999999999999999999999999999999999996 89999999999999999999997 999999999999987
Q ss_pred c
Q 045516 491 A 491 (675)
Q Consensus 491 a 491 (675)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 160
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=8.8e-17 Score=148.51 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=73.9
Q ss_pred ccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcCHHHH
Q 045516 457 KGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVGEDQV 535 (675)
Q Consensus 457 kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~i 535 (675)
.|+||..|..++.+-.++. +... +.|..+--.... ..........++|||+|||+.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~----------------~~~~~~~~~~~~lfV~nLp~~~te~d- 62 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD----------------SEFTVQSTTGHCVHMRGLPYKATEND- 62 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSCCTTCCHHH-
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCC----------------cccCCCCCCCCEEEEeCCCCCCCHHH-
Confidence 3789999998887776664 3222 222222100000 00011223368999999999999998
Q ss_pred HHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeccccCC
Q 045516 536 RASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAKQRG 602 (675)
Q Consensus 536 ~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~a~~r~ 602 (675)
|+++|..|| |..|+|+++.. |+++|||||+|.+.++|.+||.+|+..|+||.|.|.++.++.
T Consensus 63 ---L~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 63 ---IYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp ---HHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred ---HHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 789999999 77999999976 999999999999999999999999999999999999887654
No 161
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.6e-16 Score=132.92 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+.+|..||.|. +.|+. ++++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44578999999999999999999999999997 66664 4789999999999999999997 9999999999999999
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
..+
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 162
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=9.1e-17 Score=148.40 Aligned_cols=82 Identities=30% Similarity=0.479 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
....++|||+|||+++|+++|++||++|| |+.|+|+++.+|+++|||||+|.+.++|.+||.+|+..|.||.|.|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34568999999999999999999999999 77999999989999999999999999999999999999999999999887
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 163
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=133.69 Aligned_cols=86 Identities=27% Similarity=0.470 Sum_probs=79.9
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+++|..||.|..|.|+++..++.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHH----HHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3479999999999999998 78899999999999999999999999999999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998776554
No 164
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.5e-16 Score=133.43 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|+++|.+||.|..|+|+++ +|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 456789999999999999999999999999999999854 8999999999999999997 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 165
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=1.9e-15 Score=132.30 Aligned_cols=77 Identities=30% Similarity=0.442 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
...++|||+|||+++++++|++||.+||.|..|+|+ +|||||+|.+.++|.+||. ||+..|.|+.|+|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 456899999999999999999999999999999997 6799999999999999998 99999999999999998
Q ss_pred ccCCC
Q 045516 493 ERGAY 497 (675)
Q Consensus 493 ~~~~~ 497 (675)
.....
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 166
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=132.34 Aligned_cols=78 Identities=22% Similarity=0.419 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC--CeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG--NRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~--gr~i~V~ 489 (675)
....++|||+|||+++++++|+++|.+||.|..|+|+.+ +|||||+|.+.++|.+||. ||+..|. |+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345689999999999999999999999999999999854 7899999999999999998 9999999 9999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
++..+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997653
No 167
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=129.00 Aligned_cols=75 Identities=23% Similarity=0.423 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h-CCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-L-NGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l-~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|+++|.+||.|..|+|+++ +|||||+|.+.++|.+||. | |+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 456789999999999999999999999999999999963 8999999999999999998 8 99999999999998
Q ss_pred cc
Q 045516 491 AR 492 (675)
Q Consensus 491 a~ 492 (675)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 168
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=1.8e-15 Score=135.11 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=79.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+++|..||.|..|+|+++..++.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQD----LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp STTCCEEEESCCSSCCHHH----HHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4478999999999999998 77899999999999999999899999999999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|++++....
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99998876544
No 169
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=132.85 Aligned_cols=85 Identities=22% Similarity=0.374 Sum_probs=79.0
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..++.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDS----LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCeEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3479999999999999998 77899999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.++.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999875544
No 170
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=135.12 Aligned_cols=77 Identities=22% Similarity=0.464 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+.+++++|+.+|..||.|..|+|+++ +|||||+|.+.++|.+||. |||..|.|+.|+|.++..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 4689999999999999999999999999999999976 8999999999999999997 999999999999999987
Q ss_pred cCC
Q 045516 494 RGA 496 (675)
Q Consensus 494 ~~~ 496 (675)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 171
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=5e-16 Score=137.78 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+++++++|++||..|| .|..|+|+. +.++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999 899999863 3579999999999999999997 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 172
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=136.35 Aligned_cols=84 Identities=20% Similarity=0.369 Sum_probs=78.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.++|||+|||+.+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.+.|.+||.+|+..|+|+.|+|.+
T Consensus 27 ~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEES----LRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HTEEEEECCTTCCCHHH----HHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 68999999999999998 77899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 045516 598 AKQRGDFG 605 (675)
Q Consensus 598 a~~r~~~~ 605 (675)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98876543
No 173
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.8e-16 Score=134.51 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+++++++|+++|..||.|..|+|+ +++|||||+|.+.++|.+||. |||..|.|+.|+|.++..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 46899999999999999999999999999999998 458999999999999999997 999999999999999864
No 174
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.3e-15 Score=131.83 Aligned_cols=75 Identities=24% Similarity=0.490 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPF-SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+ ++++++|+++|..||.|..|+|. +|||||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45789999999999 99999999999999999999994 8999999999999999998 999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+..+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 175
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=132.28 Aligned_cols=86 Identities=23% Similarity=0.461 Sum_probs=79.6
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEeccc-CCCCCeeeEEEEEeCCHHHHHHHHH-h-CCceeCCee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKD-YDTGSVKGIAYLDFTDADSFNKALE-M-SGTEIGGYS 592 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d-~~tG~~rG~afV~F~~~e~A~~Al~-l-ng~~~~Gr~ 592 (675)
...++|||+|||..+++++ |+.+|..||.|..|+|+++ ..+|.++|||||+|.+.++|.+||. | |+..|+|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQRE----IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCCCEEEEeCCCCcCCHHH----HHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 4479999999999999998 7788999999999999999 7899999999999999999999998 8 999999999
Q ss_pred eEEeccccCCCCC
Q 045516 593 LVVDEAKQRGDFG 605 (675)
Q Consensus 593 l~V~~a~~r~~~~ 605 (675)
|+|.|+.++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998876654
No 176
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=3.6e-16 Score=135.06 Aligned_cols=81 Identities=20% Similarity=0.469 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQ----NFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
...+++|||+|||+++++++|+ ++|.+||.|..|+|+. +|.++|||||+|.+.++|..||. |||..|.|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4567999999999999999999 9999999999999874 57789999999999999999997 999999999999
Q ss_pred EEeccccC
Q 045516 488 LDFARERG 495 (675)
Q Consensus 488 V~~a~~~~ 495 (675)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997653
No 177
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=134.92 Aligned_cols=82 Identities=27% Similarity=0.501 Sum_probs=76.5
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|||+|||..+++++ |+.+|..||.|..|.|+.+. +|.++|||||+|.+.++|.+||. |||..|+|+.|+|
T Consensus 6 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKM----LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp SCCEEEEECCTTTCCHHH----HHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 368999999999999998 77889999999999999997 89999999999999999999998 9999999999999
Q ss_pred eccccCCC
Q 045516 596 DEAKQRGD 603 (675)
Q Consensus 596 ~~a~~r~~ 603 (675)
.++.++..
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99986554
No 178
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=135.71 Aligned_cols=80 Identities=25% Similarity=0.491 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCe----EEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEV----VDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
...++|||+|||+++++++|++||..||.| ..+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 457899999999999999999999999998 555555 78899999999999999999997 9999999999999
Q ss_pred EeccccCC
Q 045516 489 DFARERGA 496 (675)
Q Consensus 489 ~~a~~~~~ 496 (675)
.++..+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987654
No 179
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=127.54 Aligned_cols=81 Identities=22% Similarity=0.438 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|..||. |||..|+|+.|+|
T Consensus 5 ~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAA----IAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CceEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 478999999999999998 77889999999999999999899999999999999999999998 9999999999999
Q ss_pred eccccC
Q 045516 596 DEAKQR 601 (675)
Q Consensus 596 ~~a~~r 601 (675)
.|+.++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999865
No 180
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.4e-15 Score=129.60 Aligned_cols=76 Identities=29% Similarity=0.480 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhC--CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEV--AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~ 489 (675)
....++|||+|||+++++++|+++|.+| |.|..|+++ +|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457899999999999999999999999 999999886 7899999999999999998 99999999999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
++..+.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998654
No 181
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-15 Score=132.51 Aligned_cols=86 Identities=28% Similarity=0.419 Sum_probs=79.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC------Ccee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS------GTEI 588 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln------g~~~ 588 (675)
...++|||+|||+.+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.++|.+||. || +..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEA----LGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3478999999999999998 77889999999999999999999999999999999999999998 99 9999
Q ss_pred CCeeeEEeccccCCCCC
Q 045516 589 GGYSLVVDEAKQRGDFG 605 (675)
Q Consensus 589 ~Gr~l~V~~a~~r~~~~ 605 (675)
+|+.|+|.|+.++....
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999998876554
No 182
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=137.81 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--CcccCCeeEEEE
Q 045516 414 GGSKTLFVGNLPFS-VEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN--GQMLGNRAIRLD 489 (675)
Q Consensus 414 ~~~~tlfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~--g~~~~gr~i~V~ 489 (675)
..+++|||+|||++ +++++|+++|.+||.|.+|+|++ ++|||||+|.+.++|..||. || +..|.||.|+|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34789999999998 99999999999999999999984 48999999999999999997 75 567999999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
++..+.
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 997654
No 183
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=130.87 Aligned_cols=85 Identities=21% Similarity=0.394 Sum_probs=77.8
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCC---CCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYD---TGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~---tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
+.++|||+|||+.+++++ |+++|..||.|..|.|+++.. ++.++|||||+|.+.++|..||. ||+..|+|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEET----LKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 478999999999999998 778899999999999999876 67999999999999999999998 9999999999
Q ss_pred eEEeccccCCCCC
Q 045516 593 LVVDEAKQRGDFG 605 (675)
Q Consensus 593 l~V~~a~~r~~~~ 605 (675)
|+|.++.++....
T Consensus 80 l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 80 LEVRISERATKPA 92 (98)
T ss_dssp CEEECSSCSSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998765543
No 184
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-16 Score=138.41 Aligned_cols=82 Identities=32% Similarity=0.414 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+++|..||.|.. .++.+. +++++|||||+|.+.++|.+||+||+..|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 346789999999999999999999999999888 455554 789999999999999999999999999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 185
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=134.07 Aligned_cols=86 Identities=28% Similarity=0.510 Sum_probs=79.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEE--------EEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCc
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEIT--------RISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~--------~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~ 586 (675)
...++|||+|||+.+++++ |+++|..||.|. .|+|+++..+|+++|||||+|.+.++|.+||. ||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDD----LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCEEEEECCCTTCCHHH----HHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEcCCCCCCCHHH----HHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3479999999999999998 778999999999 69999999999999999999999999999998 9999
Q ss_pred eeCCeeeEEeccccCCCCC
Q 045516 587 EIGGYSLVVDEAKQRGDFG 605 (675)
Q Consensus 587 ~~~Gr~l~V~~a~~r~~~~ 605 (675)
.|+|+.|+|.++.++....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999998766543
No 186
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=3.1e-15 Score=125.21 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.5
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
+.+|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|..|+. |||..|+|+.|+|.
T Consensus 1 t~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDET----LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHH----HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 36899999999999998 77899999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCC
Q 045516 597 EAKQRG 602 (675)
Q Consensus 597 ~a~~r~ 602 (675)
++.++.
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 998764
No 187
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=4.5e-16 Score=135.90 Aligned_cols=81 Identities=26% Similarity=0.497 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARER 494 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~~ 494 (675)
..++|||+|||+++++++|+++|..||.|..|+|+++.+|+++|||||+|.+.++|.+||. |+..|.|+.|.|.++..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcC
Confidence 4689999999999999999999999999999999999999999999999999999999999 999999999999998765
Q ss_pred CC
Q 045516 495 GA 496 (675)
Q Consensus 495 ~~ 496 (675)
..
T Consensus 87 ~~ 88 (102)
T 2xs2_A 87 QN 88 (102)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 188
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.9e-16 Score=136.79 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+.+++++|+++|.+||.|..|+|+. ++|||||+|.+.++|.+||. |||..|.|+.|+|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 468999999999999999999999999999999874 58999999999999999997 999999999999999875
Q ss_pred c
Q 045516 494 R 494 (675)
Q Consensus 494 ~ 494 (675)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 189
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=129.28 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=78.0
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|+|+.+. +|.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEE----LEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCCSCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4478999999999999998 78899999999999999998 89999999999999999999997 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.++.++...
T Consensus 90 v~~a~~~~~~ 99 (100)
T 2do4_A 90 VAISNSGPSS 99 (100)
T ss_dssp EEECCCCSCC
T ss_pred EEECCCCCCC
Confidence 9999876653
No 190
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=131.38 Aligned_cols=81 Identities=33% Similarity=0.531 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|++||..|+ .|+|+++. +++++|||||+|.+.++|.+||. ||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45679999999999999999999999873 67788886 89999999999999999999998 999999999999999
Q ss_pred ccccCC
Q 045516 491 ARERGA 496 (675)
Q Consensus 491 a~~~~~ 496 (675)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987643
No 191
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=131.85 Aligned_cols=86 Identities=21% Similarity=0.389 Sum_probs=79.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V 595 (675)
...++|||+|||+.+++++ |+.+|..||.|..|.|+++..++.++|||||+|.+.++|.+||.+|+..|+|+.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V 89 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQET----LRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDP 89 (105)
T ss_dssp SSSSEECCBSCCTTCCHHH----HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 4479999999999999998 778899999999999999999999999999999999999999988999999999999
Q ss_pred eccccCCCCC
Q 045516 596 DEAKQRGDFG 605 (675)
Q Consensus 596 ~~a~~r~~~~ 605 (675)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998876544
No 192
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=130.04 Aligned_cols=83 Identities=23% Similarity=0.453 Sum_probs=77.6
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|||+|||+.+++++ |+.+|..||.|..|.|+.+ +|.++|||||+|.+.++|..||. ||+..|+|+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDER----LRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp SCCCEEEECCCTTCCHHH----HHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 479999999999999998 7899999999999999998 89999999999999999999998 9999999999999
Q ss_pred eccccCCCCC
Q 045516 596 DEAKQRGDFG 605 (675)
Q Consensus 596 ~~a~~r~~~~ 605 (675)
.|+.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9998876544
No 193
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=132.86 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=74.1
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V 595 (675)
...++|||+|||+.+++++ |+++|..||. ..|+|+++. +|+++|||||+|.+.++|.+||.+|+..|+||.|+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~----l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATEND----IYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SSSCEEEEESCCTTCCHHH----HHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 3478999999999999998 7899999995 599999997 899999999999999999999999999999999999
Q ss_pred eccccCC
Q 045516 596 DEAKQRG 602 (675)
Q Consensus 596 ~~a~~r~ 602 (675)
.++.+..
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9887544
No 194
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1e-15 Score=132.21 Aligned_cols=76 Identities=22% Similarity=0.476 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPF-SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+ .+++++|+.+|.+||.|..|+|. +|||||+|.+.++|..||. ||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34578999999999 99999999999999999999995 7999999999999999998 999999999999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+....
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97654
No 195
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7e-15 Score=129.95 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=74.1
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
....++|||+|||..+++++ |+++|..||.|..|.|+.+ +.++|||||+|.+.++|.+||. ||+..|+|+.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKD----IEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34579999999999999998 7789999999999999665 5689999999999999999997 99999999999
Q ss_pred EEeccccCCCC
Q 045516 594 VVDEAKQRGDF 604 (675)
Q Consensus 594 ~V~~a~~r~~~ 604 (675)
+|.|++++...
T Consensus 92 ~V~~a~~~~~~ 102 (109)
T 1x4a_A 92 RVEFPRSGRGT 102 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEEcccCCCC
Confidence 99999875543
No 196
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=130.57 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=77.6
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcc-cCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCce-eCCeee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGS-CGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE-IGGYSL 593 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~-~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~-~~Gr~l 593 (675)
+.++|||+|||..+++++ |+.+|.. ||.|..|+|+++. +|.++|||||+|.+.++|.+||. ||+.. |+|+.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~----l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGM----LYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHH----HHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 478999999999999998 7788888 9999999999998 89999999999999999999998 99999 999999
Q ss_pred EEeccccCCCCC
Q 045516 594 VVDEAKQRGDFG 605 (675)
Q Consensus 594 ~V~~a~~r~~~~ 605 (675)
+|.++.++....
T Consensus 83 ~v~~a~~~~~~~ 94 (104)
T 2dhg_A 83 RLSVAIPKASRV 94 (104)
T ss_dssp CCCBCCCCCSCC
T ss_pred EEEEccCCCcCC
Confidence 999998766544
No 197
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=3.5e-15 Score=125.41 Aligned_cols=80 Identities=29% Similarity=0.550 Sum_probs=75.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.++|||+|||..+++++ |+++|..||.|..|.|+++..+|.++|||||+|.+.++|..|+. |||..|+|+.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHH----HHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHH----HHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3479999999999999988 77889999999999999999999999999999999999999997 999999999999
Q ss_pred Eeccc
Q 045516 595 VDEAK 599 (675)
Q Consensus 595 V~~a~ 599 (675)
|.|++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99874
No 198
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=3.7e-15 Score=128.58 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=77.4
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|||+|||..+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.++|..||. |||..|+|+.|+|.
T Consensus 2 ~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQ----ILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 68999999999999998 77889999999999999999999999999999999999999997 99999999999999
Q ss_pred ccccCCC
Q 045516 597 EAKQRGD 603 (675)
Q Consensus 597 ~a~~r~~ 603 (675)
++.++..
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 9987654
No 199
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=131.25 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=73.5
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCc--EEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCc----eeCC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGE--ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT----EIGG 590 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~--I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~----~~~G 590 (675)
.++|||+|||+.+++++ |+++|+.||. |..|+|++|+.+|+++|||||+|.+.++|.+||+ |||. .|+|
T Consensus 9 m~tlfV~nL~~~~tee~----L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDS----IMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCEEEEESCCTTCCHHH----HHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCEEEEeCCCCcCCHHH----HHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 68999999999999998 7889999995 6799999999999999999999999999999998 9886 5999
Q ss_pred eeeEEecccc
Q 045516 591 YSLVVDEAKQ 600 (675)
Q Consensus 591 r~l~V~~a~~ 600 (675)
|.|.|.|++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 200
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=2.9e-15 Score=131.62 Aligned_cols=85 Identities=26% Similarity=0.330 Sum_probs=78.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCcee---CCe
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI---GGY 591 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~---~Gr 591 (675)
...++|||+|||..+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.++|.+||. ||+..| .|+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKD----LKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp TTCEEEEEESCCTTCCHHH----HHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 3479999999999999998 77888899999999999999999999999999999999999998 999988 899
Q ss_pred eeEEeccccCCCC
Q 045516 592 SLVVDEAKQRGDF 604 (675)
Q Consensus 592 ~l~V~~a~~r~~~ 604 (675)
.|+|.++.++...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876544
No 201
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=1e-15 Score=133.29 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=75.9
Q ss_pred ceEEEEecCCC------CcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC
Q 045516 518 AHTIFIKGFDS------SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590 (675)
Q Consensus 518 ~~~lfV~nLp~------~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G 590 (675)
.++|||+|||+ .+++++ |+++|++||.|..|+|+++..||+++|||||+|.+.++|.+||. |||..|.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~----L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKA----LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHH----HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHH----HHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 68999999999 666666 88999999999999999999999999999999999999999998 99999999
Q ss_pred -eeeEEeccccCCC
Q 045516 591 -YSLVVDEAKQRGD 603 (675)
Q Consensus 591 -r~l~V~~a~~r~~ 603 (675)
+.|+|.++.++..
T Consensus 82 ~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 82 KHRLFLYTMKDVER 95 (100)
T ss_dssp SCBCEEEESHHHHH
T ss_pred CeEEEEEECchhhh
Confidence 9999999987543
No 202
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=2.4e-15 Score=132.93 Aligned_cols=76 Identities=25% Similarity=0.548 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+++++++|+.+|.+||.|..|+|+ +|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567999999999999999999999999999999998 7999999999999999997 9999999999999998
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7643
No 203
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=2.2e-15 Score=145.34 Aligned_cols=83 Identities=29% Similarity=0.450 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|++||..||.|..|.|+.+.++.++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999999899999999999999999999998 9999999999999998
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7543
No 204
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=128.95 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCC-eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCC-cccCCeeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAE-VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNG-QMLGNRAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g-~~~~gr~i~V~ 489 (675)
....++|||+|||+++++++|+++|.+||. |..+.|. ++|||||+|.+.++|.+||. ||| ..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 345789999999999999999999999999 6666664 48999999999999999997 999 99999999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
++..+.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 205
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=7.7e-15 Score=128.65 Aligned_cols=85 Identities=24% Similarity=0.361 Sum_probs=78.2
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC---e
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG---Y 591 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G---r 591 (675)
...++|||+|||+.+++++ |+.+|..||.|..|+|+++. +|.++|||||+|.+.++|.+||. ||+..|.| +
T Consensus 13 ~~~~~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEED----VLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 4479999999999999998 78899999999999999997 79999999999999999999998 99999998 9
Q ss_pred eeEEeccccCCCCC
Q 045516 592 SLVVDEAKQRGDFG 605 (675)
Q Consensus 592 ~l~V~~a~~r~~~~ 605 (675)
.|+|.|+.++..+.
T Consensus 88 ~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 88 SLVVKFADTDKESG 101 (105)
T ss_dssp CCEEEESCSSCCCS
T ss_pred cEEEEECccCcccC
Confidence 99999998876554
No 206
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=4.2e-15 Score=131.65 Aligned_cols=75 Identities=28% Similarity=0.530 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFS-VEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||++ +++++|+++|.+||.|..|+| ++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999 999999999999999999999 48999999999999999996 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 207
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=133.42 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=70.0
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCccc-----CCee
Q 045516 414 GGSKTLFV--GNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQML-----GNRA 485 (675)
Q Consensus 414 ~~~~tlfV--~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~-----~gr~ 485 (675)
..+++||| +||++++++++|+++|++||.|..|+|+. .+|||||+|.+.++|.+||. |||..| .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 45789999 77999999999999999999999999874 37999999999999999997 999988 7899
Q ss_pred EEEEeccccCC
Q 045516 486 IRLDFARERGA 496 (675)
Q Consensus 486 i~V~~a~~~~~ 496 (675)
|+|.|+.....
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999875543
No 208
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=9.9e-16 Score=132.09 Aligned_cols=79 Identities=30% Similarity=0.563 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|+++|..||.|..| ..+++++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457899999999999999999999999988766 3378899999999999999999998 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 209
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=136.23 Aligned_cols=85 Identities=22% Similarity=0.347 Sum_probs=78.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.++|||+||++.+++++|+..|..+|++||.|..|.|.. +++++|||||+|.+.++|..||. |||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 34789999999999999999999999999999999998864 57899999999999999999998 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.|++.+..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987654
No 210
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=126.58 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=78.0
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V 595 (675)
...++|||+|||+.+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.+.|.+||. +++.|+|+.|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQD----LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHH----HHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHH----HHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 3478999999999999998 77899999999999999999999999999999999999999999 578999999999
Q ss_pred eccccCCCCC
Q 045516 596 DEAKQRGDFG 605 (675)
Q Consensus 596 ~~a~~r~~~~ 605 (675)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9998876654
No 211
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.9e-15 Score=125.99 Aligned_cols=82 Identities=23% Similarity=0.370 Sum_probs=76.9
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
..+.++|||+|||..+++++ |+++|..||.|..|.|+++..++.++|||||+|.+.++|.+||. |||..|+|+.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERD----LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHH----HHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34579999999999999998 77889999999999999999999999999999999999999998 99999999999
Q ss_pred EEecccc
Q 045516 594 VVDEAKQ 600 (675)
Q Consensus 594 ~V~~a~~ 600 (675)
+|.|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 212
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-16 Score=143.26 Aligned_cols=83 Identities=27% Similarity=0.514 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEE--------EEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCC
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVD--------VRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN 483 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g 483 (675)
...++|||+|||+.+++++|++||..||.|.. |+|++++ +++++|||||+|.+.++|.+||. ||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35689999999999999999999999999999 9999986 79999999999999999999998 99999999
Q ss_pred eeEEEEeccccCC
Q 045516 484 RAIRLDFARERGA 496 (675)
Q Consensus 484 r~i~V~~a~~~~~ 496 (675)
+.|+|.++..+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987643
No 213
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=126.99 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
...++|||+|||+++++++|+.+|..||.|..| +.+. +++ ||||+|.+.++|.+||.||+..|.|+.|+|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 356899999999999999999999999999998 3443 554 9999999999999999999999999999999886
Q ss_pred ccC
Q 045516 493 ERG 495 (675)
Q Consensus 493 ~~~ 495 (675)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 554
No 214
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=7.4e-15 Score=129.99 Aligned_cols=84 Identities=29% Similarity=0.440 Sum_probs=78.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+.+..+|.++|||||+|.+.+.|..||. |||..|+|+.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDE----IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4479999999999999998 77899999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.|+.++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999987654
No 215
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=3.5e-15 Score=139.86 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 456799999999999999999999999999999999976 58999999999999999998 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
.++
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 216
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.1e-15 Score=125.75 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=75.7
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+++|..||.|..|.|+++..++.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNND----LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CCTTSEEEESCCTTSCHHH----HHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4478999999999999998 78999999999999999999999999999999999999999997 999999999999
Q ss_pred Eeccc
Q 045516 595 VDEAK 599 (675)
Q Consensus 595 V~~a~ 599 (675)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 217
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=126.12 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|| ++++++|++||.+||.|..|+|. +++|||||+|.+.++|.+||. ||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 456789999996 99999999999999999999995 568999999999999999997 9999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
..+..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76643
No 218
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=134.64 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=78.3
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.++|||+|||+.+++++ |+.+|..||.|..|.|+.+..+|.++|||||+|.+.+.|.+||.||+..|+|+.|+|.+
T Consensus 25 ~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRD----LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HTEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 68999999999999998 78899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 045516 598 AKQRGDF 604 (675)
Q Consensus 598 a~~r~~~ 604 (675)
+.++..+
T Consensus 101 a~~~~~~ 107 (114)
T 2cq4_A 101 SQAEKNR 107 (114)
T ss_dssp HHHHHHH
T ss_pred cCCCccC
Confidence 9876554
No 219
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.5e-15 Score=129.36 Aligned_cols=84 Identities=25% Similarity=0.480 Sum_probs=78.6
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|..||. |||..|+|+.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEED----IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3478999999999999998 77899999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.++.++..
T Consensus 97 V~~a~~~~~ 105 (106)
T 1p27_B 97 VDWCFVRGP 105 (106)
T ss_dssp EEESEESSC
T ss_pred EEeecCCCC
Confidence 999987653
No 220
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=8.1e-15 Score=129.54 Aligned_cols=83 Identities=28% Similarity=0.522 Sum_probs=78.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.+.|..||. |||..|+|+.|+
T Consensus 24 ~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDM----LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp SSCEEEEEECCCSSCCHHH----HHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4479999999999999998 77899999999999999999999999999999999999999998 999999999999
Q ss_pred EeccccCC
Q 045516 595 VDEAKQRG 602 (675)
Q Consensus 595 V~~a~~r~ 602 (675)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 221
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=6.2e-15 Score=133.39 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=76.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.++|||+|||+.+++++ |+++|..||.|..|+|+++..+|.++|||||+|.+.++|..||.|||..|+|+.|+|.+
T Consensus 36 ~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQD----LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHH----HHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 68999999999999998 77899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 045516 598 AKQRGD 603 (675)
Q Consensus 598 a~~r~~ 603 (675)
+++...
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 875433
No 222
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=8.4e-15 Score=123.79 Aligned_cols=78 Identities=24% Similarity=0.462 Sum_probs=74.0
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||+.+++++ |+++|..||.|..|+|+++..+|+++|||||+|.+.++|.+||.+++..|+|+.|+|.
T Consensus 10 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKD----LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp CTTEEEEECCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 478999999999999998 7789999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 045516 597 EA 598 (675)
Q Consensus 597 ~a 598 (675)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 223
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=127.37 Aligned_cols=84 Identities=19% Similarity=0.419 Sum_probs=77.6
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEE-EEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee-
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEIT-RISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS- 592 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~-~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~- 592 (675)
...++|||+|||..+++++ |+.+|..||.|. .|+|+++..+|.++|||||+|.+.++|.+||. |||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENF----ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHH----HHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCccEEEEeCCCCCCCHHH----HHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 3479999999999999998 778888999999 99999999999999999999999999999999 9999999999
Q ss_pred ---eEEeccccCCC
Q 045516 593 ---LVVDEAKQRGD 603 (675)
Q Consensus 593 ---l~V~~a~~r~~ 603 (675)
|+|.|+.+...
T Consensus 83 ~~~l~v~~a~~~~~ 96 (99)
T 2div_A 83 AKRFKLNYATYSGP 96 (99)
T ss_dssp CEECCEEETTCCSS
T ss_pred ceeEEEeecCCCCC
Confidence 99999976543
No 224
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-14 Score=126.46 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=76.2
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+++|..||.|..|.|+.+. +|.++|||||+|.+.++|..||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKK----LKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCSCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3478999999999999998 77899999999999999987 59999999999999999999998 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.++.....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999875443
No 225
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=124.37 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=65.4
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHHhhhC-CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 415 GSKT-LFVGNLPFSVEQAD----VQNFFSEV-AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 415 ~~~t-lfV~nLp~~~te~~----L~~~F~~~-G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
++.| |||+|||+.+++++ |+++|.+| |.|++| ++ |||||.|.+.++|.+||+ |||..|.||+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 4566 99999999999988 56899999 599999 23 999999999999999997 999999999999
Q ss_pred EEeccccCC
Q 045516 488 LDFARERGA 496 (675)
Q Consensus 488 V~~a~~~~~ 496 (675)
|.|+..+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987654
No 226
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=126.48 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=73.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+++|..|+ .|.|+.+..++.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEET----LKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHH----HHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCccCHHH----HHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4579999999999999998 778888774 57777888889999999999999999999998 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.|++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999886654
No 227
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=128.43 Aligned_cols=87 Identities=15% Similarity=0.318 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCC---CeeeEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTG---SVKGIAYLDFTDADSFNKALE-MSGTEIGGY 591 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG---~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr 591 (675)
...++|||+|||+.+++++|+. |+++|.+||.|..|.|+++..++ +++|||||+|.+.++|.+||. |||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~-~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLK-RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHH-STTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHH-HHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3478999999999999998322 23999999999999999987654 566999999999999999998 999999999
Q ss_pred eeEEeccccCCC
Q 045516 592 SLVVDEAKQRGD 603 (675)
Q Consensus 592 ~l~V~~a~~r~~ 603 (675)
.|+|.|+.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988764
No 228
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-14 Score=125.76 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=75.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++..+ .+|||||+|.+.++|.+||. ||+..|.|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVL----ILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHH----HHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCccCCHHH----HHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 3479999999999999998 7788889999999999998543 68999999999999999998 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|+.++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2cqi_A 87 VNWATTPSSQK 97 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEECCCCcccc
Confidence 99998865543
No 229
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=4e-15 Score=126.32 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~ 492 (675)
...++|||+|||+.+++++|+++|.+| .|..|+|. +++|||||+|.+.++|.+||. |||..|.|+.|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 356899999999999999999999999 99999985 679999999999999999998 99999999999999986
Q ss_pred cc
Q 045516 493 ER 494 (675)
Q Consensus 493 ~~ 494 (675)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 230
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-14 Score=124.95 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+++|..||.|..|.|+++.. .++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPD----LRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHH----HHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4479999999999999998 788999999999999999864 389999999999999999998 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998876554
No 231
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-16 Score=141.76 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=78.4
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE--------EEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCce
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR--------ISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE 587 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~--------v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~ 587 (675)
+.++|||+|||..+++++ |+.+|..||.|.. |+|+++..+|.++|||||+|.+.++|.+||. ||+..
T Consensus 6 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIES----VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 478999999999999998 7899999999999 9999998999999999999999999999998 99999
Q ss_pred eCCeeeEEeccccCCCC
Q 045516 588 IGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 588 ~~Gr~l~V~~a~~r~~~ 604 (675)
|.|+.|+|.++.++..+
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 99999999999877654
No 232
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=8.1e-15 Score=131.03 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=73.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
..+|||+|||+.+++++ |+++|..||.|..|+|+++. +.++|||||+|.+.++|.+||. |||..|+|+.|+|.
T Consensus 5 ~~~lfV~nLp~~~te~~----L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKA----LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEECCCCCCCCHHH----HHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 57899999999999998 78899999999999999985 5589999999999999999998 99999999999999
Q ss_pred ccccCCCC
Q 045516 597 EAKQRGDF 604 (675)
Q Consensus 597 ~a~~r~~~ 604 (675)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (115)
T 4f25_A 79 RFKSRKER 86 (115)
T ss_dssp ESSCCCC-
T ss_pred ECCCcccc
Confidence 99876543
No 233
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=1e-14 Score=123.69 Aligned_cols=80 Identities=28% Similarity=0.561 Sum_probs=75.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.++|||+|||..+++++ |+++|..||.|..|.|+++..+|.++|||||+|.+.++|.+||.||+..|+|+.|+|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEE----LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHH----HHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 58999999999999998 77889999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 045516 598 AKQR 601 (675)
Q Consensus 598 a~~r 601 (675)
+++.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9764
No 234
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=140.10 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEE--------EEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCC
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDV--------RLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN 483 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v--------~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g 483 (675)
...+++|||+|||+++++++|+.||..||.|..| ++. .+|+++|||||+|.+.++|.+||. |||..|.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3456899999999999999999999999998764 333 378999999999999999999998 99999999
Q ss_pred eeEEEEeccccC
Q 045516 484 RAIRLDFARERG 495 (675)
Q Consensus 484 r~i~V~~a~~~~ 495 (675)
+.|+|.++....
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997643
No 235
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=2e-14 Score=125.63 Aligned_cols=78 Identities=26% Similarity=0.475 Sum_probs=70.2
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.++|||+|||..+++++ |+++|..||.|..|.|+ ++||||+|.+.++|.+||. ||+..|.|+.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEI----LEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCEEEECCCTTCCHHH----HHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 3478999999999999998 77888889999999987 4599999999999999998 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|+.++....
T Consensus 77 v~~a~~~~~~~ 87 (103)
T 2dgu_A 77 IVFAKPPDQKR 87 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEcCCCcccc
Confidence 99998766543
No 236
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=2.3e-15 Score=128.41 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=70.6
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccC--cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCG--EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G--~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.+|||+|||+.+++++ |+++|..|| .|..|+|+++..+|+++|||||+|.+.++|.+||. |||..|+|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~----l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDED----LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHH----HHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHH----HHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 5799999999999998 778899999 99999999999999999999999999999999997 9999999999999
Q ss_pred eccccCCC
Q 045516 596 DEAKQRGD 603 (675)
Q Consensus 596 ~~a~~r~~ 603 (675)
.++.+...
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99987654
No 237
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1.4e-14 Score=123.78 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=75.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|++ .+|.++|||||+|.+.++|..||. ||+..|+|+.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKM----LKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSCCEEEECSCCTTCCHHH----HHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3479999999999999998 778899999999999998 478999999999999999999998 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.+++++...
T Consensus 80 v~~a~~~~~~ 89 (92)
T 2dgv_A 80 VRIDRNASGP 89 (92)
T ss_dssp CEECSCCSSC
T ss_pred EEEcCCCCCC
Confidence 9999876554
No 238
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=123.22 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=75.4
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCC-eeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGS-VKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~-~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.++|||+|||..+++++ |+.+|..||.|..|.|+.+..++. ++|||||+|.+.++|.+|+. |||..|+|+.|+|
T Consensus 4 ~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDH----IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 68999999999999998 778899999999999999988766 99999999999999999998 9999999999999
Q ss_pred eccccCC
Q 045516 596 DEAKQRG 602 (675)
Q Consensus 596 ~~a~~r~ 602 (675)
.++.+..
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9997654
No 239
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.9e-15 Score=126.78 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEE-EeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVR-LSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~-i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+++++++|+.+|..||.|..|+ |+.++ ..|+|||+|.+.++|.+||. |||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999999994 77664 23449999999999999997 999999999999999
Q ss_pred cccc
Q 045516 491 ARER 494 (675)
Q Consensus 491 a~~~ 494 (675)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 240
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=5.2e-15 Score=132.29 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCee-----EE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRA-----IR 487 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~-----i~ 487 (675)
...++|||+|||+++++++|++||.+||.|..|.|+.+ |||||+|.+.++|.+||. ||+..|+|+. |.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 45789999999999999999999999999999999865 999999999999999998 9999999998 67
Q ss_pred EEecccc
Q 045516 488 LDFARER 494 (675)
Q Consensus 488 V~~a~~~ 494 (675)
|.....+
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7666554
No 241
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.1e-15 Score=130.46 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=76.5
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcE-EEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEI-TRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I-~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+++|..||.| ..|+|+++. +|+++|||||+|.+.++|.+||.+|+..|+|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMD----VLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHH----HHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEE
T ss_pred CCccEEEEeCcCCcCCHHH----HHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEE
Confidence 3478999999999999998 78999999999 899999998 89999999999999999999999999999999999
Q ss_pred EeccccCC
Q 045516 595 VDEAKQRG 602 (675)
Q Consensus 595 V~~a~~r~ 602 (675)
|.++.++.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998754
No 242
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=125.16 Aligned_cols=80 Identities=30% Similarity=0.497 Sum_probs=75.5
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE--------EEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCc
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR--------ISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~--------v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~ 586 (675)
.+.++|||+|||..+++++ |+++|..||.|.. |+|+++..+|+++|||||+|.+.++|..||. |||.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIES----VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCCSEEEEECCCSSCCHHH----HHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4479999999999999998 7889999999999 9999999999999999999999999999998 9999
Q ss_pred eeCCeeeEEeccc
Q 045516 587 EIGGYSLVVDEAK 599 (675)
Q Consensus 587 ~~~Gr~l~V~~a~ 599 (675)
.|+|+.|+|.+++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 243
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3e-14 Score=124.02 Aligned_cols=80 Identities=26% Similarity=0.479 Sum_probs=71.9
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+++|..||.| +|+.+ .++.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEET----LQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSEEEEESCCTTCCHHH----HHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4479999999999999998 77899999987 56666 679999999999999999999998 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.|+.++..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987644
No 244
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.2e-15 Score=131.97 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=68.7
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecC----HHH----HHHHHH---hCCcc
Q 045516 417 KTLFVGNL----PFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFAS----VED----AHKAIE---LNGQM 480 (675)
Q Consensus 417 ~tlfV~nL----p~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~----~e~----A~~Al~---l~g~~ 480 (675)
+.|||+|| ||.+++..|++||+.||.|..|.+++|+ +|+++|||||+|.+ +.. |.+||. |||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999 99999999999996 333 778875 79999
Q ss_pred cCCeeEEEEecc
Q 045516 481 LGNRAIRLDFAR 492 (675)
Q Consensus 481 ~~gr~i~V~~a~ 492 (675)
|+||.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 245
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.7e-14 Score=125.19 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=70.9
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC----
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG---- 590 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G---- 590 (675)
...++|||+|||+.+++++ |+++|..||.|..|.|+.+ |||||+|.+.++|..||. ||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQD----LKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp SCCCEEEEESCCSSCCHHH----HHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 3478999999999999998 7789999999999999886 899999999999999998 99999999
Q ss_pred -eeeEEeccccCCC
Q 045516 591 -YSLVVDEAKQRGD 603 (675)
Q Consensus 591 -r~l~V~~a~~r~~ 603 (675)
+.|+|.++.++..
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 9999999987543
No 246
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=1.1e-14 Score=133.09 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=79.3
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
..+.++|||+|||+.+++++ |+++|..||.|..|.|+++..+|.++|||||+|.+.++|.+||. |||..|+|+.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERD----LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHH----HHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34578999999999999998 78899999999999999999999999999999999999999998 99999999999
Q ss_pred EEeccccCCC
Q 045516 594 VVDEAKQRGD 603 (675)
Q Consensus 594 ~V~~a~~r~~ 603 (675)
+|.|+.++..
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9999987653
No 247
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=125.78 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=76.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+.+|..||.|..+.++.+..+|+++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~----l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDE----ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHH----HHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3479999999999999998 77899999999999999998999999999999999999999997 999999999999
Q ss_pred EeccccCC
Q 045516 595 VDEAKQRG 602 (675)
Q Consensus 595 V~~a~~r~ 602 (675)
|.++..+.
T Consensus 89 V~~a~~~~ 96 (98)
T 2cqp_A 89 LVLGSGPS 96 (98)
T ss_dssp EEESSCSS
T ss_pred EEEcCCCC
Confidence 99987543
No 248
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=2.1e-14 Score=135.15 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLD 489 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~ 489 (675)
.....+|||+||++.+++++|+++|++||.|..|+|+.. ..+|||||+|.+.++|..||. |||..|.| +.|+|.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 344578999999999999999999999999999999754 357999999999999999998 99999966 999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998764
No 249
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1.5e-14 Score=129.66 Aligned_cols=81 Identities=25% Similarity=0.374 Sum_probs=75.7
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
....++|||+|||+.+++++ |+++|..||.|..|+|+++..+|.++|||||+|.+.++|.+||. |||..|+|+.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTD----LASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHH----HHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34579999999999999998 78899999999999999999999999999999999999999998 99999999999
Q ss_pred EEeccc
Q 045516 594 VVDEAK 599 (675)
Q Consensus 594 ~V~~a~ 599 (675)
+|.|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999874
No 250
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=1.5e-14 Score=128.00 Aligned_cols=84 Identities=25% Similarity=0.370 Sum_probs=76.7
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||..+++++ |+.+|..||.|..|+|+++..+|.++|||||+|.+.++|.+||.+++..|+|+.|+|.
T Consensus 24 ~~~~lfV~nLp~~~te~~----L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEG----LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp --CCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 478999999999999998 7889999999999999999999999999999999999999999955699999999999
Q ss_pred ccccCCCC
Q 045516 597 EAKQRGDF 604 (675)
Q Consensus 597 ~a~~r~~~ 604 (675)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877654
No 251
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8e-15 Score=128.39 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=74.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||+.+++++ |+++|+.||.|..|+|+++.. |.++|||||+|.+.++|..||.+|++.|+|+.|+|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~----L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDD----IKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHH----HHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHH----HHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEE
Confidence 368999999999999998 778999999999999999987 999999999999999999999999999999999999
Q ss_pred cccc
Q 045516 597 EAKQ 600 (675)
Q Consensus 597 ~a~~ 600 (675)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8754
No 252
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.4e-14 Score=135.24 Aligned_cols=80 Identities=33% Similarity=0.610 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
....++|||+|||+.+++++|+++|+.||.|..|+|+++. +|.++|||||+|.+.++|.+||. |||..|.|+.|+|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 4567899999999999999999999999999999999996 89999999999999999999998 999999999999999
Q ss_pred cc
Q 045516 491 AR 492 (675)
Q Consensus 491 a~ 492 (675)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 253
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.54 E-value=2.7e-14 Score=125.64 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=75.0
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
..+.++|||+|||+.+++++ |+++|..||.|..|.|+++. +|.++|||||+|.+.++|.+||. ||+..|+|+.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34589999999999999998 77889999999999999998 89999999999999999999998 99999999999
Q ss_pred EEeccc
Q 045516 594 VVDEAK 599 (675)
Q Consensus 594 ~V~~a~ 599 (675)
+|.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999875
No 254
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=122.70 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=74.7
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+++|..||.|..|.|+++.. |.++|||||+|.+.++|.+||. ||+..|+|+.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~----l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEI----LYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TGGGEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 3479999999999999998 788999999999999999976 9999999999999999999998 999999999999
Q ss_pred Eecccc
Q 045516 595 VDEAKQ 600 (675)
Q Consensus 595 V~~a~~ 600 (675)
|.+++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 255
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.54 E-value=2.3e-14 Score=141.72 Aligned_cols=83 Identities=20% Similarity=0.436 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+.+++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 346899999999999999999999999999999999997 89999999999999999999998 9999999999999999
Q ss_pred cccCC
Q 045516 492 RERGA 496 (675)
Q Consensus 492 ~~~~~ 496 (675)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 256
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.54 E-value=8.1e-15 Score=127.56 Aligned_cols=82 Identities=27% Similarity=0.484 Sum_probs=75.2
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccC-CCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDY-DTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~-~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+.+|..|| |..|+|+++. .+|+++|||||+|.+.++|.+||.|||..|+|+.|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~ 91 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEES----IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR 91 (100)
T ss_dssp ---CEEEESCCSSCCSSSH----HHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence 3479999999999999998 789999999 9999999998 689999999999999999999999999999999999
Q ss_pred EeccccCC
Q 045516 595 VDEAKQRG 602 (675)
Q Consensus 595 V~~a~~r~ 602 (675)
|.++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 257
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=1.5e-14 Score=141.42 Aligned_cols=79 Identities=20% Similarity=0.433 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+.+++++|++||++||.|..|+|+++.+++++|||||+|.+.++|.+||.+.+..|.|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999999999899999999999999999999999656799999999998754
No 258
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.8e-14 Score=124.27 Aligned_cols=82 Identities=16% Similarity=0.300 Sum_probs=75.5
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE-EEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR-ISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~-v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V 595 (675)
..++|||+|||+.+++++ |+++|..||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||.+|+..|+||.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~----l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEE----IVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHH----HHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 378999999999999998 7899999999998 889888 7899999999999999999999999999999999999
Q ss_pred eccccCCC
Q 045516 596 DEAKQRGD 603 (675)
Q Consensus 596 ~~a~~r~~ 603 (675)
.++.++..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876543
No 259
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=121.48 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||+.+++++ |+++|..| .|..|+|+++ .+|+++|||||+|.+.++|.+||.||+..|+|+.|+|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~----l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKN----VMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCEEEEECCCSSCCHHH----HHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CccEEEEECCCCCCCHHH----HHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 378999999999999998 78899999 9999999999 78999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 045516 597 EAKQRGD 603 (675)
Q Consensus 597 ~a~~r~~ 603 (675)
++.++..
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987754
No 260
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=123.43 Aligned_cols=75 Identities=25% Similarity=0.437 Sum_probs=62.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcc--cCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQM--LGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~--~~gr~i~V~~a 491 (675)
...++|||+|||+++++++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+ |++.. +.|+.|.|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 35689999999999999999999999999999999874 79999999999999884 44444 56999999998
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7653
No 261
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=6.9e-15 Score=139.47 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+.+++++|+++|+.||.|..|+|+.+. +|.++|||||+|.+.++|.+||++|+..|.|+.|.|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35799999999999999999999999999999999997 89999999999999999999999999999999999999876
Q ss_pred c
Q 045516 494 R 494 (675)
Q Consensus 494 ~ 494 (675)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 262
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=9e-15 Score=123.47 Aligned_cols=72 Identities=26% Similarity=0.690 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhC----C-------CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccC
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEV----A-------EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLG 482 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~ 482 (675)
...++|||+|||+++++++|+++|.+| | .|..|+|.++ +|||||+|.+.++|.+||.|||..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 356899999999999999999999999 8 9999999864 89999999999999999999999999
Q ss_pred CeeEEEEe
Q 045516 483 NRAIRLDF 490 (675)
Q Consensus 483 gr~i~V~~ 490 (675)
|+.|+|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999964
No 263
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=2.5e-14 Score=129.74 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccE-EEEEecCHHHHHHHHH-hCCcccCC--eeEEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGY-GHVEFASVEDAHKAIE-LNGQMLGN--RAIRLD 489 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~-afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~ 489 (675)
+.--+|||+||++.+|+++|+++|++||.|..|+|+.. .+|| |||+|.+.++|..||. |||..|.| +.|+|.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34467889999999999999999999999999999864 3688 9999999999999998 99999988 999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
|++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998764
No 264
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=1.4e-14 Score=124.96 Aligned_cols=85 Identities=27% Similarity=0.467 Sum_probs=78.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.++|||+|||..+++++|+..|..+|..||.|..|.|+. +|.++|||||+|.+.++|..|+. |||..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 34799999999999999999989999999999999999974 47889999999999999999998 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.|+.++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999987643
No 265
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=8e-15 Score=120.29 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=71.3
Q ss_pred EEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEecc
Q 045516 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEA 598 (675)
Q Consensus 520 ~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~a 598 (675)
+|||+|||..+++++ |+++|..||.|..|.|+++..+|.++|||||+|.+.+.|.+|+.||+..|+|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVED----VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHH----HHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999998 778899999999999999998999999999999999999999999999999999999875
No 266
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=136.34 Aligned_cols=81 Identities=21% Similarity=0.361 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccC--cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCG--EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G--~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
..++|||+||++.+++++ |+++|..|| .|..|+|+++..+|+++|||||+|.+.++|.+||. |||..|+|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~----L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQ----LIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHH----HHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 368999999999999998 778899999 99999999999999999999999999999999998 99999999999
Q ss_pred EEeccccC
Q 045516 594 VVDEAKQR 601 (675)
Q Consensus 594 ~V~~a~~r 601 (675)
+|.++.++
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99999754
No 267
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=120.72 Aligned_cols=78 Identities=14% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+ +|||||+|.+.++|..||. ||+..|+|+.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQE----IRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp SCCEEEEEESCCSSCCHHH----HHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCeEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 3479999999999999998 77899999999999997 5799999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 74 v~~a~~~~~~~ 84 (90)
T 2dnq_A 74 VEASKNKSKAS 84 (90)
T ss_dssp EECSSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998766543
No 268
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=133.54 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=76.5
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE--EEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCc----ee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR--ISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT----EI 588 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~--v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~----~~ 588 (675)
...++|||+|||+.+++++ |+++|..||.|.. |+|+++..+|+++|||||+|.+. +|.+||. |||. .|
T Consensus 21 ~~~~~lfV~nL~~~~te~~----L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDS----ILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCCEEEECSCCTTCCSHH----HHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 4478999999999999998 7789999999977 99999999999999999999999 9999998 9999 99
Q ss_pred CCeeeEEeccccCCC
Q 045516 589 GGYSLVVDEAKQRGD 603 (675)
Q Consensus 589 ~Gr~l~V~~a~~r~~ 603 (675)
+|+.|+|.++.++..
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999987543
No 269
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.53 E-value=2.1e-14 Score=139.83 Aligned_cols=84 Identities=15% Similarity=0.335 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEecc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFAR 492 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~ 492 (675)
...++|||+|||+.+++++|+++|+.||.|..|+|+++. +|.++|||||+|.+.++|.+||.+++..|.|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 356899999999999999999999999999999999997 8999999999999999999999988999999999999998
Q ss_pred ccCCC
Q 045516 493 ERGAY 497 (675)
Q Consensus 493 ~~~~~ 497 (675)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 270
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=126.86 Aligned_cols=83 Identities=24% Similarity=0.469 Sum_probs=77.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|.+||. |||..|+|+.|+|.
T Consensus 8 ~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQ----LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HSCEEEESCCTTSCHHH----HHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred ccEEEEeCCCCcCCHHH----HHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 68999999999999998 77889999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCCCC
Q 045516 597 EAKQRGDF 604 (675)
Q Consensus 597 ~a~~r~~~ 604 (675)
++.++...
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99876543
No 271
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=120.50 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=72.0
Q ss_pred CceE-EEEecCCCCcCHHHHHHHHHhhhccc-CcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 517 AAHT-IFIKGFDSSVGEDQVRASLEEHFGSC-GEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 517 ~~~~-lfV~nLp~~~te~~i~~~L~~~F~~~-G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
+..+ |||+|||+.++.++|+..|+++|+.| |.|..| +| |||||.|.+.++|.+|+. |||..|.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3555 99999999999999999999999999 599998 33 999999999999999998 99999999999
Q ss_pred EEeccccCCCCC
Q 045516 594 VVDEAKQRGDFG 605 (675)
Q Consensus 594 ~V~~a~~r~~~~ 605 (675)
+|.|++.+.+.-
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999999877653
No 272
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.5e-14 Score=124.06 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=76.6
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCc-EEEEEec-ccCCCCCeeeEEEEEeCCHHHHHHHHH-hC--CceeCCe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE-ITRISVP-KDYDTGSVKGIAYLDFTDADSFNKALE-MS--GTEIGGY 591 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~-I~~v~i~-~d~~tG~~rG~afV~F~~~e~A~~Al~-ln--g~~~~Gr 591 (675)
..++|||+|||..+++++ |+.+|..||. |..|.|+ .+..+|.++|||||+|.+.++|..||. || +..|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~----l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREE----ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHH----HHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred CCCEEEEeCCCCcCCHHH----HHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 479999999999999998 6788888898 9999999 888899999999999999999999998 86 5899999
Q ss_pred eeEEeccccCCCC
Q 045516 592 SLVVDEAKQRGDF 604 (675)
Q Consensus 592 ~l~V~~a~~r~~~ 604 (675)
.|+|.|+.++...
T Consensus 83 ~l~V~~a~~~~~~ 95 (109)
T 2dis_A 83 QIAVDWAEPEIDV 95 (109)
T ss_dssp CCEEEESCSSCST
T ss_pred eEEEEEcCCCCCc
Confidence 9999999876653
No 273
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.7e-15 Score=130.23 Aligned_cols=87 Identities=22% Similarity=0.371 Sum_probs=74.1
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
..+.++|||+|||..+++++ |+.+|..||.|..|.+..+..+|.++|||||+|.+.++|..||. ||+..|+|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERD----LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHH----HHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34579999999999999998 77889999999544443333478999999999999999999998 99999999999
Q ss_pred EEeccccCCCCC
Q 045516 594 VVDEAKQRGDFG 605 (675)
Q Consensus 594 ~V~~a~~r~~~~ 605 (675)
+|.|+.++....
T Consensus 98 ~v~~a~~~~~~~ 109 (115)
T 2cpx_A 98 VIEFGKNKKQRS 109 (115)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEEccCCCCCC
Confidence 999998866543
No 274
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=1.5e-14 Score=124.30 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=74.4
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
+.++|||+|||+.+++++ |+++|..||.|..|.++.+..+|+++|||||+|.+.++|.+||. ||+..|+|+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDE----ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHH----HHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 469999999999999998 77899999999999999999999999999999999999999998 9999999999999
Q ss_pred ecccc
Q 045516 596 DEAKQ 600 (675)
Q Consensus 596 ~~a~~ 600 (675)
.++..
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98764
No 275
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=122.64 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=74.6
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
+.++|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.++|..||. |||..|.|+.|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQD----LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHH----HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 478999999999999998 78999999999999999999999999999999999999999998 9999999999988
Q ss_pred eccc
Q 045516 596 DEAK 599 (675)
Q Consensus 596 ~~a~ 599 (675)
.+.+
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8754
No 276
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=126.99 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=66.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-C---CCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-D---GRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~---g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
....++|||+|||+++++++|+++|.+||.|. +.++.+. + |+++|||||+|.+.++|.+||. |+ .|+|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34679999999999999999999999999999 8888776 4 7999999999999999999997 74 36777777
Q ss_pred EEec
Q 045516 488 LDFA 491 (675)
Q Consensus 488 V~~a 491 (675)
+...
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6654
No 277
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.8e-14 Score=123.56 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=70.3
Q ss_pred CCceEEEEecCCC-CcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCC--ceeCCe
Q 045516 516 QAAHTIFIKGFDS-SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSG--TEIGGY 591 (675)
Q Consensus 516 ~~~~~lfV~nLp~-~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng--~~~~Gr 591 (675)
.+.++|||+|||+ .+++++ |+.+|..||.|..|+|+++ +|||||+|.+.++|..||. ||+ ..|.|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~d----L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQ----LLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHH----HHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCEEEEeCCCCCcCCHHH----HHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 3589999999999 999998 8899999999999999876 6899999999999999998 775 569999
Q ss_pred eeEEeccccCCCC
Q 045516 592 SLVVDEAKQRGDF 604 (675)
Q Consensus 592 ~l~V~~a~~r~~~ 604 (675)
.|+|.|++.....
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 83 PVRVHLSQKYKRI 95 (102)
T ss_dssp ECEEEEECCCTTS
T ss_pred EEEEEECCCCCCC
Confidence 9999999865443
No 278
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=2.3e-14 Score=136.45 Aligned_cols=78 Identities=28% Similarity=0.549 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+.+++++|+++|++||.|..|+|+++. +|.++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 347899999999999999999999999999999999997 89999999999999999999998 9999999999999987
No 279
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-14 Score=123.37 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEEEeccc
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V~~a~~ 493 (675)
...++|||+|||+++++++|+++|..||.|..|+|+++ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 35689999999999999999999999999999999864 689999999999999765433 3456899999999876
Q ss_pred cC
Q 045516 494 RG 495 (675)
Q Consensus 494 ~~ 495 (675)
+.
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 280
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=5.3e-14 Score=126.96 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccE-EEEEecCHHHHHHHHH-hCCcccCC--eeEEEEe
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGY-GHVEFASVEDAHKAIE-LNGQMLGN--RAIRLDF 490 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~-afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~~ 490 (675)
....|||+||++.+++++|+.+|++||.|..|+|+.. .|| |||+|.+.++|..||. |||..|.| +.|+|.+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3445789999999999999999999999999999763 386 9999999999999998 99999987 6999999
Q ss_pred ccccC
Q 045516 491 ARERG 495 (675)
Q Consensus 491 a~~~~ 495 (675)
+..+.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98764
No 281
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=2.2e-14 Score=142.43 Aligned_cols=79 Identities=30% Similarity=0.563 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEeccc
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFARE 493 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a~~ 493 (675)
..++|||+|||+.+++++|+++|..||.|..|+|+++. +.++|||||+|.+.++|.+||. |||..|.|+.|+|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45799999999999999999999999999999999885 4479999999999999999997 999999999999999875
Q ss_pred c
Q 045516 494 R 494 (675)
Q Consensus 494 ~ 494 (675)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 282
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=3.6e-14 Score=125.64 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=68.5
Q ss_pred CceEEEEecCCCC-cCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 517 AAHTIFIKGFDSS-VGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 517 ~~~~lfV~nLp~~-~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
..++|||+|||.. +++++ |+.+|..||.|..|.| ++|||||+|.+.++|..||. ||+..|+|+.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~----l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSD----VETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CSSEEEECSCCCSSCCHHH----HHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCcEEEEeCCCcccCCHHH----HHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3689999999999 99998 7889999999999998 47999999999999999997 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.++.++..
T Consensus 94 V~~a~~~~~ 102 (110)
T 1wf1_A 94 INMAGEPKP 102 (110)
T ss_dssp EEESCCCCS
T ss_pred EEECCCCCC
Confidence 999975444
No 283
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=123.86 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC--CceeCCe
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS--GTEIGGY 591 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln--g~~~~Gr 591 (675)
..+.++|||+|||+.+++++ |+++|..||.|..|+|+++ +|||||+|.+.++|..||. |+ +..|+|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~d----L~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr 82 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGE----VISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 82 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHH----HHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 34579999999999999998 7788999999999999986 7999999999999999998 76 4789999
Q ss_pred eeEEeccccCCCC
Q 045516 592 SLVVDEAKQRGDF 604 (675)
Q Consensus 592 ~l~V~~a~~r~~~ 604 (675)
.|+|.|+.++.-.
T Consensus 83 ~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 83 PIYIQFSNHKELK 95 (105)
T ss_dssp ECCBCCCSSSSCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999876554
No 284
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=1.9e-14 Score=132.39 Aligned_cols=80 Identities=14% Similarity=0.286 Sum_probs=75.0
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCc---EEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE---ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~---I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l 593 (675)
..++|||+|||+.+++++ |+++|..||. |..|+|+++.. |+++|||||+|.+.++|.+||.||+..|+||.|
T Consensus 43 ~~~~lfVgnLp~~~te~d----L~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVED----VQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHH----HHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 368999999999999998 7899999999 89999999987 999999999999999999999999999999999
Q ss_pred EEeccccC
Q 045516 594 VVDEAKQR 601 (675)
Q Consensus 594 ~V~~a~~r 601 (675)
+|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 285
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=118.26 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=70.5
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|++ +||||+|.+.++|.+||. ||+..|.|+.|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQE----LRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CSSEEEEEESCCSSCCHHH----HHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3479999999999999998 778999999999999974 399999999999999998 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.++.++....
T Consensus 76 V~~a~~~~~~~ 86 (92)
T 2dgt_A 76 VQLSTSRLRTA 86 (92)
T ss_dssp EEESSCCCSCC
T ss_pred EEEccCCCCCC
Confidence 99998766543
No 286
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=5.7e-14 Score=136.98 Aligned_cols=82 Identities=26% Similarity=0.494 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
...++|||+|||+.+++++|+++|..||.|..|+|+++. +|.++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999997 89999999999999999999998 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 287
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=1.5e-14 Score=123.10 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=72.2
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
++|||+|||..+++++ |+++|..||.|..|.|+++..+|.++|||||+|.+.+ |..|+. |||..|+|+.|+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQ----VKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHH----HTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHH----HHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 6899999999999998 7889999999999999999999999999999999999 999998 999999999999999
Q ss_pred cccCCC
Q 045516 598 AKQRGD 603 (675)
Q Consensus 598 a~~r~~ 603 (675)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 987544
No 288
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-13 Score=119.53 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-h--CCceeCCee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-M--SGTEIGGYS 592 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-l--ng~~~~Gr~ 592 (675)
.+.++|||+|||+.+++++ |+.+|..||.|..|.|+++ +|||||+|.+.++|..||. | ++..|.|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~----L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETE----VIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SCCSEEEEESCCTTCCHHH----HHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 4579999999999999998 7899999999999999875 8999999999999999997 5 578899999
Q ss_pred eEEeccccCCCCC
Q 045516 593 LVVDEAKQRGDFG 605 (675)
Q Consensus 593 l~V~~a~~r~~~~ 605 (675)
|+|.|+..+....
T Consensus 83 l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 83 IYIQYSNHKELKT 95 (101)
T ss_dssp CEEEECSCSSCCC
T ss_pred EEEEEcCcccCcC
Confidence 9999998765543
No 289
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=4.4e-14 Score=126.86 Aligned_cols=81 Identities=14% Similarity=0.285 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCc---EEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE---ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~---I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l 593 (675)
..++|||+|||+.+++++ |+++|..||. |..|+|+++.. |+++|||||+|.+.++|.+||.||+..|+||.|
T Consensus 16 ~~~~l~V~nLp~~~te~~----l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIED----VQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHH----HHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 378999999999999998 7899999999 89999999977 999999999999999999999999999999999
Q ss_pred EEeccccCC
Q 045516 594 VVDEAKQRG 602 (675)
Q Consensus 594 ~V~~a~~r~ 602 (675)
+|.++..+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986543
No 290
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=5.1e-14 Score=134.27 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC---CeeEEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG---NRAIRLD 489 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~---gr~i~V~ 489 (675)
...++|||+|||+.+++++|+++|+.||.|..|+|+++.+|+++|||||+|.+.++|.+||. |||..|. |++|+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 35789999999999999999999999999999999999999999999999999999999997 9998776 4999999
Q ss_pred ec
Q 045516 490 FA 491 (675)
Q Consensus 490 ~a 491 (675)
|+
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 291
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=127.20 Aligned_cols=81 Identities=27% Similarity=0.532 Sum_probs=75.1
Q ss_pred CCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 514 ~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
.....++|||+|||..+++++ |+.+|..||.|..|+|+++..+|+++|||||+|.+.++|.+||. |||..|+|+.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHH----HHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCcEEEEEeCCCCCCHHH----HHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344589999999999999988 77899999999999999999999999999999999999999997 9999999999
Q ss_pred eEEecc
Q 045516 593 LVVDEA 598 (675)
Q Consensus 593 l~V~~a 598 (675)
|+|.++
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999985
No 292
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=121.83 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCce--eCC
Q 045516 514 RGQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTE--IGG 590 (675)
Q Consensus 514 ~~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~--~~G 590 (675)
...++++|||+|||+.+++++ |+.+|.+||.|..|+|++. ||||||+|.+.++|..|+. |++.. |+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~----L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEAD----LVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred cCCCCcEEEEeCCCCCCCHHH----HHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 345689999999999999998 7899999999999999864 7999999999999999998 88765 889
Q ss_pred eeeEEeccccC
Q 045516 591 YSLVVDEAKQR 601 (675)
Q Consensus 591 r~l~V~~a~~r 601 (675)
+.|+|.|++.+
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999999765
No 293
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=127.01 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=73.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
..+|||+|||+.+++++ |+++|..| .|..|+|+++.. |+++|||||+|.+.++|.+||.||+..|+||.|.|..
T Consensus 16 ~~~v~V~nLp~~~te~d----l~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMEND----VRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHH----HHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 57999999999999999 78899999 899999999976 9999999999999999999999999999999999998
Q ss_pred cccCC
Q 045516 598 AKQRG 602 (675)
Q Consensus 598 a~~r~ 602 (675)
+.++.
T Consensus 90 a~~~~ 94 (109)
T 2dnn_A 90 ATERQ 94 (109)
T ss_dssp CCHHH
T ss_pred CCccc
Confidence 87653
No 294
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=8e-14 Score=122.37 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHHhhhCCCeEEEEEeeCC--CCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeE
Q 045516 415 GSKTLFVGNLPF-----SVEQADVQNFFSEVAEVVDVRLSSDA--DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAI 486 (675)
Q Consensus 415 ~~~tlfV~nLp~-----~~te~~L~~~F~~~G~I~~v~i~~~~--~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i 486 (675)
.+++|+|+||.. ..++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|+. |||..|.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 578999999963 23789999999999999999999986 36899999999999999999997 99999999999
Q ss_pred EEEeccc
Q 045516 487 RLDFARE 493 (675)
Q Consensus 487 ~V~~a~~ 493 (675)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999864
No 295
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=122.32 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=73.0
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|+|+++ +|||||+|.+.++|..||. |||..|+|+.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQL----MRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp SSCCEEEEECCSSCCCHHH----HHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3478999999999999998 7788889999999999987 7999999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|++++....
T Consensus 93 v~~a~~~~~~~ 103 (109)
T 1x4g_A 93 CYWGKESPDMT 103 (109)
T ss_dssp EECCCCCCSSC
T ss_pred EEecCCCCCCC
Confidence 99998876543
No 296
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=119.41 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=72.0
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC--Ce
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG--GY 591 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~--Gr 591 (675)
..+.++|||+|||..+++++ |+++|..||.|..|.|+++ +|||||+|.+.++|.+||. ||+..|. |+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAA----LAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHH----HHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 34579999999999999998 7789999999999999865 7899999999999999998 9999999 99
Q ss_pred eeEEeccccCCC
Q 045516 592 SLVVDEAKQRGD 603 (675)
Q Consensus 592 ~l~V~~a~~r~~ 603 (675)
.|+|.|++++..
T Consensus 84 ~l~V~~a~~~~~ 95 (97)
T 1why_A 84 RLRVDFAKSGPS 95 (97)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988654
No 297
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=5.5e-14 Score=126.80 Aligned_cols=76 Identities=20% Similarity=0.387 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|| ++++++|+++|..||.|..|+|. .++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346799999996 79999999999999999999996 568999999999999999997 9999999999999999
Q ss_pred cccC
Q 045516 492 RERG 495 (675)
Q Consensus 492 ~~~~ 495 (675)
..+.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8664
No 298
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=9.4e-14 Score=120.40 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=72.9
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|+|+++ +|||||+|.+.+.|.+||. ||+..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEE----MRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCTTEEEEESCCTTCCHHH----HHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 3478999999999999998 7899999999999999875 7999999999999999997 999999999999
Q ss_pred EeccccCCCCC
Q 045516 595 VDEAKQRGDFG 605 (675)
Q Consensus 595 V~~a~~r~~~~ 605 (675)
|.|+.++....
T Consensus 83 v~~a~~~~~~~ 93 (99)
T 2cpj_A 83 VRFACHSASLT 93 (99)
T ss_dssp EEESSCCSCCC
T ss_pred EEEcCCCCCCC
Confidence 99998766543
No 299
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.49 E-value=1.4e-13 Score=124.58 Aligned_cols=85 Identities=19% Similarity=0.352 Sum_probs=78.1
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
....++|||+|||..+++++ |+.+|..||.|..|.|+++. +|.++|||||+|.+.++|..||. |||..|+|+.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHH----HHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34579999999999999998 77889999999999999998 89999999999999999999998 99999999999
Q ss_pred EEeccccCCCC
Q 045516 594 VVDEAKQRGDF 604 (675)
Q Consensus 594 ~V~~a~~r~~~ 604 (675)
+|.++.+....
T Consensus 107 ~V~~a~~~~~~ 117 (124)
T 2kt5_A 107 DIQLVASQIDL 117 (124)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEeCCCCCC
Confidence 99999875543
No 300
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=4.7e-14 Score=126.04 Aligned_cols=73 Identities=16% Similarity=0.354 Sum_probs=63.7
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee---
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS--- 592 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~--- 592 (675)
..++|||+|||+.+++++ |+++|..||.|..|.|+.+ |||||+|.+.++|..||. ||+..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQD----LKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEECCSSCCTTH----HHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 368999999999999998 7788999999999999876 899999999999999998 9999999998
Q ss_pred --eEEecccc
Q 045516 593 --LVVDEAKQ 600 (675)
Q Consensus 593 --l~V~~a~~ 600 (675)
|+|.+..+
T Consensus 84 ~~i~v~~~~~ 93 (115)
T 3beg_B 84 AYIRVKVDGP 93 (115)
T ss_dssp CBCEEEECC-
T ss_pred EEEEeccCCC
Confidence 55555444
No 301
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=7.9e-14 Score=122.42 Aligned_cols=84 Identities=15% Similarity=0.276 Sum_probs=72.8
Q ss_pred ceEEEEecCCCCcCHHH--HHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCe-ee
Q 045516 518 AHTIFIKGFDSSVGEDQ--VRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGY-SL 593 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~--i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr-~l 593 (675)
.++|||+|||+.+.+.. +.+.|+.+|+.||.|..|.|+ ..+|.++|||||+|.+.++|..||. |||..|+|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 68999999999884311 233488999999999999998 4689999999999999999999998 999999998 99
Q ss_pred EEeccccCCC
Q 045516 594 VVDEAKQRGD 603 (675)
Q Consensus 594 ~V~~a~~r~~ 603 (675)
+|.++.....
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999976544
No 302
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.48 E-value=1.9e-14 Score=117.92 Aligned_cols=75 Identities=25% Similarity=0.525 Sum_probs=70.9
Q ss_pred EEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEecc
Q 045516 520 TIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEA 598 (675)
Q Consensus 520 ~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~a 598 (675)
+|||+|||..+++++ |+.+|..||.|..|.|+++..+|.++|||||+|.+.+.|.+||.+++..|+|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEK----IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHH----HHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999998 778888899999999999999999999999999999999999999999999999999875
No 303
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=6.5e-14 Score=121.85 Aligned_cols=76 Identities=18% Similarity=0.436 Sum_probs=70.3
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
++|||+|||..+++++ |+++|..||.|..|.|+++ ++|||||+|.+.++|..||. ||+..|+|+.|+|.+
T Consensus 1 ~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGE----LERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCSSCSHHH----HHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 4799999999999998 7788889999999999987 68999999999999999998 999999999999999
Q ss_pred cccCCC
Q 045516 598 AKQRGD 603 (675)
Q Consensus 598 a~~r~~ 603 (675)
+.++..
T Consensus 72 a~~~~~ 77 (101)
T 2hvz_A 72 STGMPR 77 (101)
T ss_dssp SSSCCC
T ss_pred ccCCCC
Confidence 987653
No 304
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.1e-13 Score=118.16 Aligned_cols=76 Identities=18% Similarity=0.435 Sum_probs=69.1
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhccc--CcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSC--GEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~--G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
...++|||+|||+.+++++ |+.+|..| |.|..|.++ +|||||+|.+.++|..||. ||+..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEM----IEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCCCEEEEESCCTTCCHHH----HHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred CCcCEEEEeCCCCCCCHHH----HHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4479999999999999998 77889999 999999875 5799999999999999998 9999999999
Q ss_pred eEEeccccCCC
Q 045516 593 LVVDEAKQRGD 603 (675)
Q Consensus 593 l~V~~a~~r~~ 603 (675)
|+|.|++++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 305
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=120.31 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCC--ceeCCe
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSG--TEIGGY 591 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng--~~~~Gr 591 (675)
..+.++|||+|||+.+++++ |+.+|.+||.|..|.|+++ +|||||+|.+.++|..||. |++ ..|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~----L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEAD----LVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHH----HHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 34579999999999999998 7899999999999999875 7999999999999999998 765 459999
Q ss_pred eeEEeccccCCCC
Q 045516 592 SLVVDEAKQRGDF 604 (675)
Q Consensus 592 ~l~V~~a~~r~~~ 604 (675)
.|+|.|+..+...
T Consensus 82 ~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 QAFFNYSTSKRIT 94 (104)
T ss_dssp BCEEEECSSSSCC
T ss_pred EEEEEEccCcccc
Confidence 9999999876544
No 306
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=122.87 Aligned_cols=81 Identities=16% Similarity=0.359 Sum_probs=74.8
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCcee------
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI------ 588 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~------ 588 (675)
...++|||+|||..+++++ |+.+|..||.|..|+|+++. +|.++|||||+|.+.+.|..||. |||..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQE----LENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHH----HHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3478999999999999998 78999999999999999998 89999999999999999999998 999999
Q ss_pred --CCeeeEEeccccC
Q 045516 589 --GGYSLVVDEAKQR 601 (675)
Q Consensus 589 --~Gr~l~V~~a~~r 601 (675)
.++.|+|.|+.++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998754
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=1.9e-14 Score=125.27 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||+.+++++ |+.+|..||.|.. .++.+..+|.++|||||+|.+.++|.+||.||+..|.|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAE----LKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHH----HHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEE
Confidence 478999999999999998 7788888899888 77777788999999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 045516 597 EAKQRGDF 604 (675)
Q Consensus 597 ~a~~r~~~ 604 (675)
++.++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99876554
No 308
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=1e-13 Score=131.37 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCC--eeEEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN--RAIRLD 489 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g--r~i~V~ 489 (675)
...++|||+|||+.+++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+||. |||..|.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998 89999999999999999999998 99999988 999998
Q ss_pred ec
Q 045516 490 FA 491 (675)
Q Consensus 490 ~a 491 (675)
|+
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 309
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-14 Score=117.37 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=71.0
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEec
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDE 597 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~ 597 (675)
++|||+|||..+++++ |+.+|+.||.|..|.|+++..+|.++|||||+|.+.++|.+|+. ++ ..|+|+.|+|.+
T Consensus 1 ~~l~v~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEG----LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHH----HHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 4799999999999998 77899999999999999999999999999999999999999999 77 999999999998
Q ss_pred c
Q 045516 598 A 598 (675)
Q Consensus 598 a 598 (675)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 310
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-14 Score=129.57 Aligned_cols=82 Identities=15% Similarity=0.279 Sum_probs=75.4
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||+.+++++ |+.+|..||.|..+.++.+..+|+++|||||+|.+.++|.+||.||+..|+|+.|.|.
T Consensus 24 ~~~~l~V~nLp~~~te~~----l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKH----VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHH----HHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 468999999999999998 7899999999998777777789999999999999999999999999999999999999
Q ss_pred ccccCC
Q 045516 597 EAKQRG 602 (675)
Q Consensus 597 ~a~~r~ 602 (675)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 311
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.4e-14 Score=120.86 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=69.2
Q ss_pred CCceEEEEecCCC-CcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 516 QAAHTIFIKGFDS-SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 516 ~~~~~lfV~nLp~-~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
.+.++|||+|||+ .+++++ |+.+|..||.|..|.|. +|||||+|.+.++|..||. |||..|.|+.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~----l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKED----LFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHH----HHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred CCCCEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 4589999999998 999998 78899999999999984 6899999999999999998 99999999999
Q ss_pred EEeccccCCC
Q 045516 594 VVDEAKQRGD 603 (675)
Q Consensus 594 ~V~~a~~r~~ 603 (675)
+|.++.++..
T Consensus 76 ~V~~a~~~~~ 85 (96)
T 2kvi_A 76 ILEVSSSNAR 85 (96)
T ss_dssp CEEEEECCCC
T ss_pred EEEEcCcCCC
Confidence 9999987544
No 312
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.6e-13 Score=114.71 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=67.9
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.+..|||+||++.+++++ |+++|.+||.|..|+|.. ++|||||+|.+.++|.+|+. ||+..|+|+.|+|
T Consensus 6 ~~~wL~VgNL~~~~te~~----L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPT----LRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCEEEEECCCTTCCCHH----HHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ccceEEEeCCCccCCHHH----HHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 378999999999999998 778888999999999976 48999999999999999998 9999999999999
Q ss_pred eccc
Q 045516 596 DEAK 599 (675)
Q Consensus 596 ~~a~ 599 (675)
.++.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9984
No 313
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.46 E-value=1.7e-13 Score=129.51 Aligned_cols=78 Identities=29% Similarity=0.521 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-CCCcccEEEEEecCHHHHHHHHH-hCCcccCCee--EEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRA--IRLD 489 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~--i~V~ 489 (675)
...++|||+|||+.+++++|+++|..||.|..|+|+.+. +|.++|||||+|.+.++|.+||. |||..|.|+. |+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 356899999999999999999999999999999999997 89999999999999999999998 9999999975 7777
Q ss_pred ec
Q 045516 490 FA 491 (675)
Q Consensus 490 ~a 491 (675)
|+
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 314
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.9e-14 Score=118.76 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCc-EEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCC-ceeCCeee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE-ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSG-TEIGGYSL 593 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~-I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng-~~~~Gr~l 593 (675)
..++|||+|||..+++++ |+++|..||. |..+.+. ++|||||+|.+.++|.+||. ||| ..|+|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADD----LRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCEEEECCCTTCCHHH----HHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 478999999999999998 7788899999 6655552 48999999999999999998 999 99999999
Q ss_pred EEeccccCCCC
Q 045516 594 VVDEAKQRGDF 604 (675)
Q Consensus 594 ~V~~a~~r~~~ 604 (675)
+|.++.++..+
T Consensus 76 ~v~~a~~~~~~ 86 (93)
T 2cqh_A 76 EVDYSVSKKLR 86 (93)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCcccc
Confidence 99999876554
No 315
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=7.4e-14 Score=116.42 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=66.1
Q ss_pred eEEEEecCCCCcCH--HHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCe-eeE
Q 045516 519 HTIFIKGFDSSVGE--DQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGY-SLV 594 (675)
Q Consensus 519 ~~lfV~nLp~~~te--~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr-~l~ 594 (675)
++|||+|||..+++ +.+.+.|+.+|+.||.|..|.|+ ..+|+++|||||+|.+.++|..||. |||..|+|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 68999999999843 11334488999999999999988 4689999999999999999999998 999999999 888
Q ss_pred Ee
Q 045516 595 VD 596 (675)
Q Consensus 595 V~ 596 (675)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 316
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=119.22 Aligned_cols=80 Identities=34% Similarity=0.521 Sum_probs=71.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..| ..++.++|||||+|.+.++|..||. |||..|+|+.|+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~----l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDE----LKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TGGGEEEEESCCSSCCHHH----HHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3479999999999999998 77899999988766 3568899999999999999999998 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.++.++...
T Consensus 85 v~~a~~~~~~ 94 (96)
T 1fjc_A 85 LYYTGEKGGT 94 (96)
T ss_dssp EEECSSSCCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 317
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.9e-13 Score=115.17 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=69.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|++ +||||+|.+.++|..||. |||..|+|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQE----LRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CCSCCEEEESCCTTCCHHH----HHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3478999999999999998 778888999999999974 399999999999999998 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.++.++...
T Consensus 75 v~~a~~~~~~ 84 (90)
T 2dnp_A 75 VELSTKGQKK 84 (90)
T ss_dssp EEESCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876443
No 318
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=121.67 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=74.0
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++. +.++|||||+|.+.++|.+|+. |||..|+|+.|+
T Consensus 27 ~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPD----LRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp TCCCEEEEESCCTTCCHHH----HHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCcCCHHH----HHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3479999999999999998 78899999999999999885 4589999999999999999998 999999999999
Q ss_pred EeccccC
Q 045516 595 VDEAKQR 601 (675)
Q Consensus 595 V~~a~~r 601 (675)
|.++.++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 319
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.4e-13 Score=115.03 Aligned_cols=78 Identities=27% Similarity=0.412 Sum_probs=69.3
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.++|||+|||+.+++++ |+.+|..||.|..| +.+..+|+ ||||+|.+.+.|..||.||+..|+|+.|+|.+
T Consensus 8 ~~~l~V~nl~~~~t~~~----l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQ----LSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCEEEEECCCTTCCHHH----HHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred CCEEEEECCCCCCCHHH----HHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 68999999999999998 78899999999987 55555555 99999999999999999999999999999998
Q ss_pred cccCCCC
Q 045516 598 AKQRGDF 604 (675)
Q Consensus 598 a~~r~~~ 604 (675)
+.++...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8765543
No 320
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=8.9e-14 Score=123.11 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=71.1
Q ss_pred CCCceEEEEecCCCC-cCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC--CceeCC
Q 045516 515 GQAAHTIFIKGFDSS-VGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS--GTEIGG 590 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~-~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln--g~~~~G 590 (675)
..+.++|||+|||+. +++++ |+++|..||.|..|+|++. +|||||+|.+.++|..||. || +..|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~----L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSA----VLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHH----HHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCCEEEEeCCCCccCCHHH----HHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 445899999999998 99998 8899999999999999754 7999999999999999997 65 567999
Q ss_pred eeeEEeccccCCCCC
Q 045516 591 YSLVVDEAKQRGDFG 605 (675)
Q Consensus 591 r~l~V~~a~~r~~~~ 605 (675)
|.|+|.|+..+....
T Consensus 92 r~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 92 RCVKVDLSEKYKKLV 106 (112)
T ss_dssp SCCEEEEECSCSSSS
T ss_pred EEEEEEECccccccc
Confidence 999999998765543
No 321
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-14 Score=124.34 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCc---EEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGE---ITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSL 593 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~---I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l 593 (675)
..++|||+|||+.+++++ |+++|..||. |..|+|+++.. |+++|||||+|.+.++|.+||.||+..|+||.|
T Consensus 10 ~~~~l~V~nLp~~~te~~----l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMED----VLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp SCCEEEEECCCSSCCSHH----HHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CccEEEEeCCCCCCCHHH----HHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 378999999999999998 7789999888 89999999987 999999999999999999999999999999999
Q ss_pred EEeccccCC
Q 045516 594 VVDEAKQRG 602 (675)
Q Consensus 594 ~V~~a~~r~ 602 (675)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987643
No 322
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=123.42 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=71.3
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC--CceeCCee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS--GTEIGGYS 592 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln--g~~~~Gr~ 592 (675)
.+.++|||+|||+.+++++ |+++|..||.|..|+|+++ +|||||+|.+.++|..||. |+ +..|.|+.
T Consensus 29 ~ps~~LfVgNLp~~vte~d----L~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGE----VISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SCCSEEEEESCCTTCCHHH----HHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 4579999999999999998 7899999999999999986 7999999999999999998 76 46899999
Q ss_pred eEEeccccCCCC
Q 045516 593 LVVDEAKQRGDF 604 (675)
Q Consensus 593 l~V~~a~~r~~~ 604 (675)
|+|.|+.++.-.
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876554
No 323
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.45 E-value=1.5e-13 Score=121.76 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=68.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccC-cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCG-EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G-~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.++|||+|||+.+++++ |+++|..|| .|..|.|+.. .++|||||+|.+.++|..||. |||..|+|+.|+|
T Consensus 28 ~~~l~VgnLp~~~te~d----L~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQD----LKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp CEEEEEECSSCCCCHHH----HHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCEEEEECCCCCCCHHH----HHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 68999999999999998 778889999 9999999653 479999999999999999998 9999999999999
Q ss_pred eccccCC
Q 045516 596 DEAKQRG 602 (675)
Q Consensus 596 ~~a~~r~ 602 (675)
.++....
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9987543
No 324
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=1.9e-13 Score=119.12 Aligned_cols=82 Identities=23% Similarity=0.469 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||+.+++++ |+.+|..||.|..|+|+++. +|.++|||||+|.+.++|..||. ++..|+|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETE----IRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 368999999999999998 77899999999999999998 89999999999999999999999 9999999999999
Q ss_pred ccccCCCC
Q 045516 597 EAKQRGDF 604 (675)
Q Consensus 597 ~a~~r~~~ 604 (675)
++.++...
T Consensus 82 ~a~~~~~~ 89 (102)
T 2xs2_A 82 PAIRKQNL 89 (102)
T ss_dssp EEEECC--
T ss_pred ECCcCcch
Confidence 99876543
No 325
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.4e-13 Score=112.52 Aligned_cols=74 Identities=24% Similarity=0.428 Sum_probs=68.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-h-CCceeCCeee
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-M-SGTEIGGYSL 593 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-l-ng~~~~Gr~l 593 (675)
...++|||+|||..+++++ |+.+|..||.|..|.|+++ +|||||+|.+.+.|..|+. | |+..|+|+.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~----l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETD----LRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp SSCCCEEEECCTTTSCHHH----HHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCccEEEEcCCCCCCCHHH----HHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 3478999999999999998 7788999999999999875 7999999999999999998 8 9999999999
Q ss_pred EEeccc
Q 045516 594 VVDEAK 599 (675)
Q Consensus 594 ~V~~a~ 599 (675)
+|.|++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999974
No 326
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=8.8e-14 Score=125.63 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=72.4
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcE----EEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCee
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEI----TRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYS 592 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I----~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~ 592 (675)
..++|||+|||+.+++++ |++||..||.| ..|+|+++ .+|+++|||||+|.+.++|.+||.+|+..|+||.
T Consensus 22 ~~~~v~V~nLp~~~te~d----l~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEE----VVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHH----HHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE
Confidence 368999999999999999 77888888875 68999988 5899999999999999999999999999999999
Q ss_pred eEEeccccC
Q 045516 593 LVVDEAKQR 601 (675)
Q Consensus 593 l~V~~a~~r 601 (675)
|.|..+.++
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 999988654
No 327
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.43 E-value=1.9e-13 Score=123.82 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEE--EEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEIT--RISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLV 594 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~--~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~ 594 (675)
..++|||+|||+.+++++ |+++|..| .|. .|+|+++.. |+++|||||+|.+.++|.+||.+++..|+||.|.
T Consensus 41 ~~~~lfVgnLp~~~te~d----L~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEE----IVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp SCCEEEEECCCTTCCHHH----HHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 368999999999999998 78999999 566 999999987 9999999999999999999999888999999999
Q ss_pred EeccccC
Q 045516 595 VDEAKQR 601 (675)
Q Consensus 595 V~~a~~r 601 (675)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9987654
No 328
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=1.9e-13 Score=130.64 Aligned_cols=78 Identities=29% Similarity=0.542 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEec
Q 045516 413 SGGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDFA 491 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~a 491 (675)
....++|||+|||+.+++++|+++|+.||.|..| ..++.++|||||+|.+.++|.+||. |||..|.|+.|+|.|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 3457899999999999999999999999988766 5588999999999999999999998 9999999999999998
Q ss_pred ccc
Q 045516 492 RER 494 (675)
Q Consensus 492 ~~~ 494 (675)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 329
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.42 E-value=2.5e-13 Score=121.05 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=73.4
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
+.++|||+|||..+++++ |+.+|..||.|..|.|+++ +..+|||||+|.+.++|..||. |||..|+|+.|+|
T Consensus 7 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEE----MYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp CCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 378999999999999998 7788999999999999976 4559999999999999999998 9999999999999
Q ss_pred eccccCCCC
Q 045516 596 DEAKQRGDF 604 (675)
Q Consensus 596 ~~a~~r~~~ 604 (675)
.|+.++...
T Consensus 80 ~~a~~~~~~ 88 (115)
T 3lqv_A 80 LYYNANRAF 88 (115)
T ss_dssp EECCHHHHT
T ss_pred EEecCChhh
Confidence 999875443
No 330
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=120.50 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=68.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|||+|||+.+++++ |+.+|..||.|..|.|+. .+|||||+|.+.++|..||. |||..|+|+.|+|.
T Consensus 10 ~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAE----IQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 68999999999999998 788999999999999976 37899999999999999998 99999999999999
Q ss_pred ccccC
Q 045516 597 EAKQR 601 (675)
Q Consensus 597 ~a~~r 601 (675)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 99754
No 331
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.6e-13 Score=117.99 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=69.1
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|||+|||..+++++ |+.+|..||.|..|+|++ ++|||||+|.+.++|..||. |||..|+|+.|+|
T Consensus 26 ~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEAD----LIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SCCEEEEESCCTTCCHHH----HHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCEEEEcCCCcccCHHH----HHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 368999999999999998 778899999999999984 48999999999999999998 9999999999999
Q ss_pred eccccC
Q 045516 596 DEAKQR 601 (675)
Q Consensus 596 ~~a~~r 601 (675)
.|++++
T Consensus 96 ~~a~~~ 101 (101)
T 2la4_A 96 GWGKER 101 (101)
T ss_dssp CBCCCC
T ss_pred EeccCC
Confidence 999864
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.4e-12 Score=112.60 Aligned_cols=77 Identities=19% Similarity=0.403 Sum_probs=68.6
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
..++|||+|| .+++++ |+.+|..||.|..|.|. .++|||||+|.+.++|.+||. ||+..|+|+.|+|
T Consensus 14 ~~~~l~V~n~--~~t~~~----l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTL----LRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCSEEEEECS--SCCHHH----HHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCEEEEcCC--CCCHHH----HHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4789999996 788887 78999999999999995 458999999999999999997 9999999999999
Q ss_pred eccccCCCCC
Q 045516 596 DEAKQRGDFG 605 (675)
Q Consensus 596 ~~a~~r~~~~ 605 (675)
.|+.++....
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765543
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=128.57 Aligned_cols=85 Identities=24% Similarity=0.367 Sum_probs=71.9
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEE--eccc---CCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRIS--VPKD---YDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~--i~~d---~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~ 589 (675)
.+.++|||+|||+.+++++ |+.+|..||.|..|. ++.+ ..+|+++|||||+|.+.++|..||. |||..|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKD----LKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHH----HHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4478999999999999998 778999999987751 2222 3468999999999999999999998 9999999
Q ss_pred CeeeEEeccccCCCC
Q 045516 590 GYSLVVDEAKQRGDF 604 (675)
Q Consensus 590 Gr~l~V~~a~~r~~~ 604 (675)
|+.|+|.|++++...
T Consensus 119 g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 119 GKPMVVQFARSARPK 133 (143)
T ss_dssp TEECEEEECCCSCC-
T ss_pred CcEEEEEECCCCCCc
Confidence 999999999875543
No 334
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=2.2e-13 Score=136.53 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCccc-
Q 045516 413 SGGSKTLFVGNLPFSV---------EQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQML- 481 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~---------te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~- 481 (675)
....++|||+||++.+ ++++|+.+|++||.|..|+|+. ++|||||+|.+.++|+.||+ |||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4567999999999998 7999999999999999999985 48999999999999999997 999999
Q ss_pred -----------CCeeEEEEeccccC
Q 045516 482 -----------GNRAIRLDFARERG 495 (675)
Q Consensus 482 -----------~gr~i~V~~a~~~~ 495 (675)
.|+.|.|.|+....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 335
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.42 E-value=4.4e-13 Score=118.34 Aligned_cols=78 Identities=27% Similarity=0.482 Sum_probs=70.3
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
....++|||+|||..+++++ |+.+|..||.|..|.|+ +|||||+|.+.++|..|+. |||..|+|+.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~----L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESE----LNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHH----HHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34579999999999999998 78899999999999997 6899999999999999998 99999999999
Q ss_pred EEeccccCCCC
Q 045516 594 VVDEAKQRGDF 604 (675)
Q Consensus 594 ~V~~a~~r~~~ 604 (675)
+|.|+.++..+
T Consensus 96 ~V~~a~~~~~r 106 (108)
T 2jvo_A 96 EVVYSKLPAKR 106 (108)
T ss_dssp EEESCSCCC--
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 336
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=7.8e-13 Score=114.32 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=68.7
Q ss_pred CCCceEEEEecCCC-CcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 515 GQAAHTIFIKGFDS-SVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 515 ~~~~~~lfV~nLp~-~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
.++.++|||+|||. .+++++ |+.+|..||.|..|+|. +|||||+|.+.++|..||. |||..|+|+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~----L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKED----LFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHH----HHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34589999999998 999998 77899999999999983 7899999999999999998 9999999999
Q ss_pred eEEeccccC
Q 045516 593 LVVDEAKQR 601 (675)
Q Consensus 593 l~V~~a~~r 601 (675)
|+|.+++++
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998764
No 337
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.9e-13 Score=116.07 Aligned_cols=79 Identities=18% Similarity=0.349 Sum_probs=69.7
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|||+.+++++ |+.+|..||.|. +.|+. +.++|||||+|.+.++|..||. |||..|+|+.|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~----l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSD----LKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CCCCEEEEECCCTTCCHHH----HHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCcCcHHH----HHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3478999999999999998 778889999996 66664 3678999999999999999997 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.++.++..
T Consensus 88 V~~a~~~~~ 96 (97)
T 2e5j_A 88 VALARQQRD 96 (97)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCCC
Confidence 999987653
No 338
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8e-13 Score=117.41 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCC-----------HHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcc
Q 045516 413 SGGSKTLFVGNLPFSVE-----------QADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQM 480 (675)
Q Consensus 413 ~~~~~tlfV~nLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~ 480 (675)
...+++|||.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|.+||. |||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34579999999954432 5899999999999999976 443 479999999999999999997 99999
Q ss_pred cCCeeEEEEeccccCCC
Q 045516 481 LGNRAIRLDFARERGAY 497 (675)
Q Consensus 481 ~~gr~i~V~~a~~~~~~ 497 (675)
|.||.|+|.++.++..+
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999765443
No 339
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.40 E-value=8.4e-13 Score=127.17 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=76.5
Q ss_pred CCCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 515 GQAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
....++|||+|||+.+++++ |+++|..||.|..|.|+.+. +|.++|||||+|.+.++|..||. ||+..|+|+.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHH----HHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 34579999999999999998 77888899999999999998 89999999999999999999998 99999999999
Q ss_pred EEeccccCC
Q 045516 594 VVDEAKQRG 602 (675)
Q Consensus 594 ~V~~a~~r~ 602 (675)
+|.|+....
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 999987643
No 340
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=4.3e-12 Score=131.11 Aligned_cols=85 Identities=27% Similarity=0.456 Sum_probs=79.0
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
.+.++|||+|||+.+++++|+.+|.++|..||.|..|+|++ +|+++|||||+|.+.++|.+||. |||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 44899999999999999999999999999999999999987 58899999999999999999997 999999999999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.|+.....
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999976553
No 341
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.8e-13 Score=118.80 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=69.2
Q ss_pred ceEEEEecC----CCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC----HHH----HHHHHH---
Q 045516 518 AHTIFIKGF----DSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD----ADS----FNKALE--- 582 (675)
Q Consensus 518 ~~~lfV~nL----p~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~----~e~----A~~Al~--- 582 (675)
...|||+|| ++.+++.. |+.+|..||.|..|.++.|+.||+++|||||+|.+ ++. |.+|+.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~----Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDIS----IKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHH----HHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 378999999 99999998 78899999999999999999999999999999996 433 778865
Q ss_pred hCCceeCCeeeEEeccc
Q 045516 583 MSGTEIGGYSLVVDEAK 599 (675)
Q Consensus 583 lng~~~~Gr~l~V~~a~ 599 (675)
|||..|+||.|+|.+.+
T Consensus 78 lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 78 SSGCFIMGFKFEVILNK 94 (136)
T ss_dssp TTCEEETTEEEEEEECC
T ss_pred hcCCeecCcEEEEEECc
Confidence 79999999999999764
No 342
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.1e-13 Score=112.60 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=67.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..++|||+|||..+++++ |+.+|..||.|..|+|+++ ++|||||+|.+.++|.+|+.. ...+.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDE----LREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHH----HHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEE
Confidence 379999999999999998 7899999999999999875 689999999999999754333 456699999999
Q ss_pred ccccCCCCC
Q 045516 597 EAKQRGDFG 605 (675)
Q Consensus 597 ~a~~r~~~~ 605 (675)
++.++....
T Consensus 74 ~a~~~~~~~ 82 (88)
T 1wf0_A 74 NAEPKHNSN 82 (88)
T ss_dssp CCCCCCCCC
T ss_pred ecCCCCCCC
Confidence 998766543
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.38 E-value=1.2e-12 Score=114.93 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=71.6
Q ss_pred CceEEEEecCCC--CcCHHHHHHHHHhhhcccCcEEEEEecccCCC-CCeeeEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 045516 517 AAHTIFIKGFDS--SVGEDQVRASLEEHFGSCGEITRISVPKDYDT-GSVKGIAYLDFTDADSFNKALE-MSGTEIGGYS 592 (675)
Q Consensus 517 ~~~~lfV~nLp~--~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~t-G~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~ 592 (675)
++++|+|.||.. .+. +++.+.|+++|++||.|..|.|++++.+ ++++|||||+|.+.++|.+|+. |||+.|+||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~-dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVD-EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC----CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhh-HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 479999999963 232 3456679999999999999999998654 6899999999999999999998 9999999999
Q ss_pred eEEecccc
Q 045516 593 LVVDEAKQ 600 (675)
Q Consensus 593 l~V~~a~~ 600 (675)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 344
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=111.49 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEE-ecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRIS-VPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~-i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
..++|||+|||+.+++++ |+.+|..||.|..|+ |+.+..+|. |||+|.+.+.|..||. |||..|+|+.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEV----LDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp SCCCEEEEEECSSSCHHH----HHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCEEEEEcCCCCCCHHH----HHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 368999999999999998 778888999999994 888765443 9999999999999998 999999999999
Q ss_pred EeccccCC
Q 045516 595 VDEAKQRG 602 (675)
Q Consensus 595 V~~a~~r~ 602 (675)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (96)
T 2e44_A 86 VAYIPDEM 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEcCccc
Confidence 99998874
No 345
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=2.4e-13 Score=119.21 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEE
Q 045516 421 VGNLPFSVEQADVQNFF------------SEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIR 487 (675)
Q Consensus 421 V~nLp~~~te~~L~~~F------------~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~ 487 (675)
+.||++.+++++|+++| ++||.|.+|+|+++.+++++|||||+|.+.++|.+|+. |||..|.||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777888777766 99999999999998888999999999999999999997 999999999999
Q ss_pred EEec
Q 045516 488 LDFA 491 (675)
Q Consensus 488 V~~a 491 (675)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 346
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=115.16 Aligned_cols=78 Identities=17% Similarity=0.368 Sum_probs=69.1
Q ss_pred CCceEEEE--ecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCcee----
Q 045516 516 QAAHTIFI--KGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI---- 588 (675)
Q Consensus 516 ~~~~~lfV--~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~---- 588 (675)
.+.++||| +||++.+++++ |+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+. |||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~----L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQ----LLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHH----HHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCEEEEECCCCCCCCCHHH----HHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 34789999 66999999998 7899999999999998764 7999999999999999998 999998
Q ss_pred -CCeeeEEeccccCCC
Q 045516 589 -GGYSLVVDEAKQRGD 603 (675)
Q Consensus 589 -~Gr~l~V~~a~~r~~ 603 (675)
.|+.|.|.|+....-
T Consensus 93 g~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 93 GQKITLYLNFVEKVQW 108 (114)
T ss_dssp SCEEECEEEEESCCCC
T ss_pred CCCcEEEEEecccCcc
Confidence 789999999875443
No 347
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.35 E-value=8.1e-13 Score=130.41 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCe--EEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCe----eEE
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEV--VDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNR----AIR 487 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I--~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr----~i~ 487 (675)
.+++|||+|||+.+++++|+++|++||.| ..|+|+.+. +..+|||||+|.+.++|.+||. |||..|.|+ +|.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 46899999999999999999999999999 899998776 5557999999999999999997 999999887 577
Q ss_pred EEec
Q 045516 488 LDFA 491 (675)
Q Consensus 488 V~~a 491 (675)
|.|+
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7664
No 348
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.4e-12 Score=114.38 Aligned_cols=79 Identities=27% Similarity=0.331 Sum_probs=69.5
Q ss_pred CCceEEEcCC--CCCC--------CHHHHHHHhhhCCCeEEEEEeeCCC---CCcccEEEEEecCHHHHHHHHH-hCCcc
Q 045516 415 GSKTLFVGNL--PFSV--------EQADVQNFFSEVAEVVDVRLSSDAD---GRFKGYGHVEFASVEDAHKAIE-LNGQM 480 (675)
Q Consensus 415 ~~~tlfV~nL--p~~~--------te~~L~~~F~~~G~I~~v~i~~~~~---g~~kG~afV~F~~~e~A~~Al~-l~g~~ 480 (675)
.++.|+|.|| |..+ .+++|+++|++||.|.+|+|+++.. ++++|||||+|.+.++|.+||. |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4789999998 4343 3478999999999999999998873 4689999999999999999997 99999
Q ss_pred cCCeeEEEEeccc
Q 045516 481 LGNRAIRLDFARE 493 (675)
Q Consensus 481 ~~gr~i~V~~a~~ 493 (675)
|.||.|+|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998754
No 349
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=7.3e-12 Score=111.15 Aligned_cols=87 Identities=17% Similarity=0.347 Sum_probs=72.9
Q ss_pred CCCceEEEEecCCCCcC-------HHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCc
Q 045516 515 GQAAHTIFIKGFDSSVG-------EDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGT 586 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~~t-------e~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~ 586 (675)
..+.++|+|.||..... .+++.+.|+.+|.+||.|..|.| .+. .++|||||+|.+.++|.+||. |||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34589999999954433 23467789999999999999966 443 379999999999999999997 9999
Q ss_pred eeCCeeeEEeccccCCCCC
Q 045516 587 EIGGYSLVVDEAKQRGDFG 605 (675)
Q Consensus 587 ~~~Gr~l~V~~a~~r~~~~ 605 (675)
.|+|+.|+|.++.++..+.
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 9999999999998876654
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.33 E-value=3.4e-12 Score=115.65 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=69.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeE-EEEEeCCHHHHHHHHH-hCCceeCC--eee
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGI-AYLDFTDADSFNKALE-MSGTEIGG--YSL 593 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~-afV~F~~~e~A~~Al~-lng~~~~G--r~l 593 (675)
...|||+||++.+++++ |+++|++||.|..|+|+... +|| |||+|.+.++|..|+. |||..|.| +.|
T Consensus 28 VL~I~V~NL~~~vte~~----L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDV----LHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp EEEEEEESCCSCCCHHH----HHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred eEEEEECCCCCCCCHHH----HHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 56778999999999998 88999999999999988642 677 9999999999999998 99999988 999
Q ss_pred EEeccccCCCC
Q 045516 594 VVDEAKQRGDF 604 (675)
Q Consensus 594 ~V~~a~~r~~~ 604 (675)
+|.|+++..-.
T Consensus 99 rI~~ak~~~l~ 109 (130)
T 3zzy_A 99 RIDFSKLTSLN 109 (130)
T ss_dssp EEEECSCSSCC
T ss_pred EEEecCCCcee
Confidence 99999876543
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.33 E-value=3.2e-12 Score=108.64 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=62.4
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVV 595 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V 595 (675)
.+.++|||+|||+.+++++ |+++|++||.|..|+|+++ ++|||||+|.+.++|.. +......++|+.|.|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~----L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~-~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEE----LQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS-LCGEDLIIKGISVHI 78 (89)
T ss_dssp --CCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH-HTTCEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH-HcCCCcccCCEEEEE
Confidence 3479999999999999998 7899999999999999985 69999999999999883 222234457999999
Q ss_pred eccccCCC
Q 045516 596 DEAKQRGD 603 (675)
Q Consensus 596 ~~a~~r~~ 603 (675)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987654
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.32 E-value=3.9e-12 Score=111.56 Aligned_cols=86 Identities=13% Similarity=0.271 Sum_probs=73.8
Q ss_pred CCceEEEEecCCC--CcC----HHHHHHHHHhhhcccCcEEEEEecccCCC--CCeeeEEEEEeCCHHHHHHHHH-hCCc
Q 045516 516 QAAHTIFIKGFDS--SVG----EDQVRASLEEHFGSCGEITRISVPKDYDT--GSVKGIAYLDFTDADSFNKALE-MSGT 586 (675)
Q Consensus 516 ~~~~~lfV~nLp~--~~t----e~~i~~~L~~~F~~~G~I~~v~i~~d~~t--G~~rG~afV~F~~~e~A~~Al~-lng~ 586 (675)
.++++|+|.|+-. .+. ..+|.+.|+++|++||.|..|.|+++..+ ++++||+||+|.+.++|.+|+. |||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3588999999832 332 35688889999999999999999998765 4689999999999999999998 9999
Q ss_pred eeCCeeeEEeccccC
Q 045516 587 EIGGYSLVVDEAKQR 601 (675)
Q Consensus 587 ~~~Gr~l~V~~a~~r 601 (675)
.|+||.|+|.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999988643
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=4.3e-12 Score=107.41 Aligned_cols=74 Identities=12% Similarity=0.243 Sum_probs=67.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~ 596 (675)
.++|||+|||+.+++++ |+++|..| .|..|+|. +++|||||+|.+.++|.+||. |||..|+|+.|+|.
T Consensus 5 ~~~l~V~nLp~~~t~~~----l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQE----VHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCEEEESCCSSCCHHH----HHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 68999999999999998 78999999 99999884 568999999999999999998 99999999999999
Q ss_pred ccccCC
Q 045516 597 EAKQRG 602 (675)
Q Consensus 597 ~a~~r~ 602 (675)
++....
T Consensus 74 ~a~~~~ 79 (88)
T 1wg1_A 74 LQPTDA 79 (88)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 986543
No 354
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.32 E-value=2.7e-12 Score=131.42 Aligned_cols=81 Identities=30% Similarity=0.354 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h-CCcccC---CeeEEEE
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-L-NGQMLG---NRAIRLD 489 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l-~g~~~~---gr~i~V~ 489 (675)
..++|||+|||+.+++++|+++|..||.|..|+|+.+.+|+++|||||+|.+.++|.+||. | ++..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999998 8 555555 9999999
Q ss_pred eccccC
Q 045516 490 FARERG 495 (675)
Q Consensus 490 ~a~~~~ 495 (675)
++....
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 987653
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.32 E-value=9.3e-12 Score=121.56 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=71.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEec
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDE 597 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~ 597 (675)
.++|||+|||+.+++++ |+.+|+.||.|..|+|+++. +|.++|||||+|.+.++|..||.+.+..|+|+.|+|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~----L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDD----IKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHH----HHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHH----HHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 58999999999999988 88999999999999999986 49999999999999999999999666799999999998
Q ss_pred ccc
Q 045516 598 AKQ 600 (675)
Q Consensus 598 a~~ 600 (675)
...
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 764
No 356
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=3.1e-12 Score=120.37 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=69.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC--eeeE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGG--YSLV 594 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G--r~l~ 594 (675)
..+|||+||++.+++++ |+++|++||.|..|.|+.. ..+|||||+|.+.++|..|+. |||..|.| +.|+
T Consensus 46 vl~l~VgNL~~~vted~----L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDV----LHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp EEEEEECSCCSCCCHHH----HHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred eEEEEEeCcCCCCCHHH----HHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 57789999999999998 7889999999999999754 257999999999999999998 99999965 9999
Q ss_pred EeccccCCC
Q 045516 595 VDEAKQRGD 603 (675)
Q Consensus 595 V~~a~~r~~ 603 (675)
|.|++++.-
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999988643
No 357
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=2.4e-12 Score=125.69 Aligned_cols=76 Identities=29% Similarity=0.443 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC-CeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG-NRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~-gr~i~V~~ 490 (675)
..+++|||+|||+.+++++|+++|..|| .|..|+|+.+ .+|||||+|.+.++|.+||. |||..|. |+.|+|.|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 3479999999999999999999999999 9999999764 27999999999999999998 9999999 99999999
Q ss_pred ccc
Q 045516 491 ARE 493 (675)
Q Consensus 491 a~~ 493 (675)
+.+
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.31 E-value=3.8e-12 Score=113.98 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=69.3
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHHhhhCCCeEEEEEeeCC-----CCCcccEEEEEecCHHHHHHHHH-hCCcccCC
Q 045516 415 GSKTLFVGNLPF-----SVEQADVQNFFSEVAEVVDVRLSSDA-----DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGN 483 (675)
Q Consensus 415 ~~~tlfV~nLp~-----~~te~~L~~~F~~~G~I~~v~i~~~~-----~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~g 483 (675)
.+++|+|.||-. .--+++|+++|++||.|.+|+|+++. +++++||+||+|.+.++|.+|+. |||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999942 23478999999999999999999875 24678999999999999999997 99999999
Q ss_pred eeEEEEeccc
Q 045516 484 RAIRLDFARE 493 (675)
Q Consensus 484 r~i~V~~a~~ 493 (675)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 359
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.30 E-value=4.4e-12 Score=127.19 Aligned_cols=76 Identities=29% Similarity=0.443 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC-CeeEEEEe
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVA-EVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG-NRAIRLDF 490 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~-gr~i~V~~ 490 (675)
...++|||+|||+.+++++|+++|..|| .|..|+|+.. .+|||||+|.+.++|.+||. |||..|. |+.|+|.|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 3468999999999999999999999999 9999999653 37999999999999999998 9999999 99999999
Q ss_pred ccc
Q 045516 491 ARE 493 (675)
Q Consensus 491 a~~ 493 (675)
+.+
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 864
No 360
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=5.2e-12 Score=106.32 Aligned_cols=71 Identities=21% Similarity=0.484 Sum_probs=64.2
Q ss_pred CceEEEEecCCCCcCHHHHHHHHHhhhccc----C-------cEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCC
Q 045516 517 AAHTIFIKGFDSSVGEDQVRASLEEHFGSC----G-------EITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSG 585 (675)
Q Consensus 517 ~~~~lfV~nLp~~~te~~i~~~L~~~F~~~----G-------~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng 585 (675)
..++|||+|||+.+++++ |+++|..| | .|..|++.++ +|||||+|.+.++|.+||.|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~----l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEA----MMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHH----HHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTT
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCC
Confidence 479999999999999998 56666667 8 9999999876 7999999999999999999999
Q ss_pred ceeCCeeeEEec
Q 045516 586 TEIGGYSLVVDE 597 (675)
Q Consensus 586 ~~~~Gr~l~V~~ 597 (675)
..|+|+.|+|.+
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999974
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=4.1e-12 Score=114.48 Aligned_cols=77 Identities=19% Similarity=0.409 Sum_probs=68.1
Q ss_pred CCceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 045516 516 QAAHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLV 594 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~ 594 (675)
...++|||+|| .+++++ |+.+|..||.|..|.|. .++|||||+|.+.++|..||. |||..|+|+.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~----L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTL----LRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCEEEEECS--SCCHHH----HHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCEEEEcCC--CCCHHH----HHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45799999996 688887 88999999999999996 358999999999999999997 999999999999
Q ss_pred EeccccCCCC
Q 045516 595 VDEAKQRGDF 604 (675)
Q Consensus 595 V~~a~~r~~~ 604 (675)
|.|+.++...
T Consensus 105 V~~a~~~~~~ 114 (121)
T 2bz2_A 105 VNIARKQPML 114 (121)
T ss_dssp EEECCSSCC-
T ss_pred EEEeCCCCCC
Confidence 9999876544
No 362
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=6.5e-12 Score=113.26 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=67.1
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeE-EEEEeCCHHHHHHHHH-hCCceeCC--eee
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGI-AYLDFTDADSFNKALE-MSGTEIGG--YSL 593 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~-afV~F~~~e~A~~Al~-lng~~~~G--r~l 593 (675)
...|||+||++.+++++ |+++|+.||.|..|+|+.. .|| |||+|.+.++|..|+. |||..|.| +.|
T Consensus 25 vl~l~V~NL~~~vt~~~----L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDV----LYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp EEEEEEESCCSCCCHHH----HHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred EEEEEEcCcCCCCCHHH----HHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 34567999999999998 8899999999999999652 276 9999999999999998 99999987 689
Q ss_pred EEeccccCCC
Q 045516 594 VVDEAKQRGD 603 (675)
Q Consensus 594 ~V~~a~~r~~ 603 (675)
+|.|++++.-
T Consensus 95 ~V~~Ak~~~l 104 (124)
T 2e5i_A 95 KIEYARPTRL 104 (124)
T ss_dssp EEECCSCSCC
T ss_pred EEEEecCCcc
Confidence 9999988754
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.29 E-value=5.2e-12 Score=113.08 Aligned_cols=84 Identities=15% Similarity=0.358 Sum_probs=72.8
Q ss_pred CceEEEEecCCCCcC-HHHHHHHHHhhhcccCcEEEEEecccCC----CCCeeeEEEEEeCCHHHHHHHHH-hCCceeCC
Q 045516 517 AAHTIFIKGFDSSVG-EDQVRASLEEHFGSCGEITRISVPKDYD----TGSVKGIAYLDFTDADSFNKALE-MSGTEIGG 590 (675)
Q Consensus 517 ~~~~lfV~nLp~~~t-e~~i~~~L~~~F~~~G~I~~v~i~~d~~----tG~~rG~afV~F~~~e~A~~Al~-lng~~~~G 590 (675)
++++|+|.|+-.... .++|.+.|+++|++||.|..|.|+++.. +++++||+||+|.+.++|.+|+. |||++|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 589999999853321 2457788999999999999999999864 46789999999999999999998 99999999
Q ss_pred eeeEEecccc
Q 045516 591 YSLVVDEAKQ 600 (675)
Q Consensus 591 r~l~V~~a~~ 600 (675)
|.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.5e-11 Score=109.53 Aligned_cols=75 Identities=20% Similarity=0.406 Sum_probs=65.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCC---CCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDT---GSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~t---G~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
.++|||+|||+.+++++ |+++|.+||.|. +.++.+..+ |+++|||||+|.+.++|.+||. |+ .|+|+.|
T Consensus 8 ~~~lfVgnLp~~~te~~----L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDE----ITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp CCCEEEECCCTTCCHHH----HHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCEEEEcCCCCCCCHHH----HHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 68999999999999998 789999999999 889888877 7999999999999999999998 73 4777777
Q ss_pred EEeccc
Q 045516 594 VVDEAK 599 (675)
Q Consensus 594 ~V~~a~ 599 (675)
.+....
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 666543
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-11 Score=103.56 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=64.7
Q ss_pred CCceEEEcCCC-------CCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeE
Q 045516 415 GSKTLFVGNLP-------FSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAI 486 (675)
Q Consensus 415 ~~~tlfV~nLp-------~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i 486 (675)
..++|.|.-.. ..+++++|+++|++||.|..|+|+ ++++|||||+|.+.++|..||. +++ +.|++|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 35678877665 468999999999999999999998 4679999999999999999998 544 679999
Q ss_pred EEEeccccC
Q 045516 487 RLDFARERG 495 (675)
Q Consensus 487 ~V~~a~~~~ 495 (675)
+|.|+..+.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=1.3e-11 Score=123.70 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=68.1
Q ss_pred CCceEEEEecCCCCcC-----HHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCcee-
Q 045516 516 QAAHTIFIKGFDSSVG-----EDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEI- 588 (675)
Q Consensus 516 ~~~~~lfV~nLp~~~t-----e~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~- 588 (675)
...++|||+||+..++ ...+.+.|+.+|+.||.|..|+|+.. +|||||+|.+.++|..|+. |||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3479999999999872 12233448899999999999999875 8999999999999999998 999999
Q ss_pred -----------CCeeeEEeccccCCC
Q 045516 589 -----------GGYSLVVDEAKQRGD 603 (675)
Q Consensus 589 -----------~Gr~l~V~~a~~r~~ 603 (675)
.|+.|.|.|+....+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987554
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=5.1e-11 Score=105.87 Aligned_cols=80 Identities=14% Similarity=0.220 Sum_probs=71.1
Q ss_pred CceEEEEecCCCCcC------HHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC
Q 045516 517 AAHTIFIKGFDSSVG------EDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG 589 (675)
Q Consensus 517 ~~~~lfV~nLp~~~t------e~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~ 589 (675)
++++|.|.|+-.... ..+|.+.|+++|++||.|..|.|+++. .+||+||+|.+.++|.+|+. |||++|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999865443 588999999999999999999998763 48999999999999999998 9999999
Q ss_pred CeeeEEecccc
Q 045516 590 GYSLVVDEAKQ 600 (675)
Q Consensus 590 Gr~l~V~~a~~ 600 (675)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.19 E-value=1.4e-11 Score=107.80 Aligned_cols=75 Identities=16% Similarity=0.329 Sum_probs=64.0
Q ss_pred EecCCCCcCHHHHH-------HHHHhhh-cccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 045516 523 IKGFDSSVGEDQVR-------ASLEEHF-GSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSL 593 (675)
Q Consensus 523 V~nLp~~~te~~i~-------~~L~~~F-~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l 593 (675)
+.||+..+++++|+ +.|+.+| ++||.|..|.|+++.. ++++|||||.|.+.++|.+|+. |||+.|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666666776554 5567777 9999999999998864 7899999999999999999998 99999999999
Q ss_pred EEecc
Q 045516 594 VVDEA 598 (675)
Q Consensus 594 ~V~~a 598 (675)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=4.3e-11 Score=126.21 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=65.5
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCccc---CCe--
Q 045516 413 SGGSKTLFVGN--LPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQML---GNR-- 484 (675)
Q Consensus 413 ~~~~~tlfV~n--Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~---~gr-- 484 (675)
...+++|||+| |++.+|+++|+++|++||.|..|+|.. ++|||||+|.+.++|++||+ |||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999999 589999999999999999999998864 48999999999999999998 999988 355
Q ss_pred eEEEEecc
Q 045516 485 AIRLDFAR 492 (675)
Q Consensus 485 ~i~V~~a~ 492 (675)
.|+|.|..
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777764
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.14 E-value=1e-10 Score=103.94 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCC--C--------CCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 414 GGSKTLFVGNLPF--S--------VEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 414 ~~~~tlfV~nLp~--~--------~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
..+++|.|.||=. . --+++|+++|++||.|.+|+|.++. .+||+||.|.+.++|.+||. |||..|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3578999999932 2 1245789999999999999997652 58999999999999999997 9999999
Q ss_pred CeeEEEEeccc
Q 045516 483 NRAIRLDFARE 493 (675)
Q Consensus 483 gr~i~V~~a~~ 493 (675)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1e-09 Score=95.01 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccccCCCC
Q 045516 528 SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQRGDF 604 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~r~~~ 604 (675)
..+++++ |+.+|.+||.|..|+|+ ++++|||||+|.+.++|..||. +++ +.|+.|+|.|++++...
T Consensus 27 ~~~te~~----L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDV----LLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHH----HHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHH----HHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 4577777 88999999999999998 3679999999999999999998 544 68999999999876543
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=8.8e-10 Score=92.21 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCCceEEEEecCC----CCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCC
Q 045516 515 GQAAHTIFIKGFD----SSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGG 590 (675)
Q Consensus 515 ~~~~~~lfV~nLp----~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~G 590 (675)
+++..||+|..++ .+.-.++|...|.+.|..||.|..|+|+.+. +||+|.+.+.|.+||.|||..|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCC
Confidence 5668899999887 3556677888899999999999999999974 899999999999999999999999
Q ss_pred eeeEEeccccC
Q 045516 591 YSLVVDEAKQR 601 (675)
Q Consensus 591 r~l~V~~a~~r 601 (675)
|.|+|.++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998763
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=90.20 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=61.5
Q ss_pred CceEEEcCCC----CCCCH----HHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEE
Q 045516 416 SKTLFVGNLP----FSVEQ----ADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIR 487 (675)
Q Consensus 416 ~~tlfV~nLp----~~~te----~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~ 487 (675)
.-||+|.-++ .+.-. .+|.+.|.+||.|..|+|..+ .+||+|.+.++|.+||.|||..|.||.|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 4688888877 23333 578999999999999999965 39999999999999999999999999999
Q ss_pred EEeccc
Q 045516 488 LDFARE 493 (675)
Q Consensus 488 V~~a~~ 493 (675)
|.++++
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.4e-09 Score=94.39 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecC-HHHHHHHHH-h--CCcccCCeeEEEE
Q 045516 415 GSKTLFVGNLPFS-VEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFAS-VEDAHKAIE-L--NGQMLGNRAIRLD 489 (675)
Q Consensus 415 ~~~tlfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~-~e~A~~Al~-l--~g~~~~gr~i~V~ 489 (675)
.++.|||+||++. ++.++|+++|+.||.|..|.|.++. -+|||.|.+ ...|..|+. | ++..|.|..+++.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 4689999999999 9999999999999999999998764 369999999 889999997 7 5888999988887
Q ss_pred ecc
Q 045516 490 FAR 492 (675)
Q Consensus 490 ~a~ 492 (675)
+..
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.7e-09 Score=88.86 Aligned_cols=79 Identities=18% Similarity=0.340 Sum_probs=69.0
Q ss_pred CCCCceEEEEecCCCC-----cCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCcee
Q 045516 514 RGQAAHTIFIKGFDSS-----VGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEI 588 (675)
Q Consensus 514 ~~~~~~~lfV~nLp~~-----~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~ 588 (675)
.+++..||+|..++.. +-.+++...|.++|..||.|..|+|+.+. +||+|.+.+.|.+||.|||..|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeee
Confidence 4567899999998743 44567777899999999999999999983 9999999999999999999999
Q ss_pred CCeeeEEecccc
Q 045516 589 GGYSLVVDEAKQ 600 (675)
Q Consensus 589 ~Gr~l~V~~a~~ 600 (675)
+||.|+|.+-.+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999997643
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.81 E-value=7.5e-09 Score=109.12 Aligned_cols=75 Identities=17% Similarity=0.390 Sum_probs=64.2
Q ss_pred CCCceEEEEec--CCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeC--
Q 045516 515 GQAAHTIFIKG--FDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIG-- 589 (675)
Q Consensus 515 ~~~~~~lfV~n--Lp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~-- 589 (675)
..++++|||+| |++.+++++ |+++|++||.|..|.|++ .||||||+|.+.++|.+||+ |||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~----L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQ----LLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHH----HHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCEEEEEcCCCCCCCCHHH----HHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 45589999999 578999998 789999999999998865 37999999999999999998 9999883
Q ss_pred -Ce--eeEEeccc
Q 045516 590 -GY--SLVVDEAK 599 (675)
Q Consensus 590 -Gr--~l~V~~a~ 599 (675)
|+ .|.|.|..
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 45 57777763
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=6.7e-09 Score=87.26 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=61.0
Q ss_pred CCceEEEcCCCCC-----CCH----HHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCee
Q 045516 415 GSKTLFVGNLPFS-----VEQ----ADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRA 485 (675)
Q Consensus 415 ~~~tlfV~nLp~~-----~te----~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~ 485 (675)
..-||+|..|+.. .-. .+|.+.|.+||.|+.|+|..++ +||+|.+.+.|.+||.|||..|.||.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 4569999998743 222 5689999999999999999763 99999999999999999999999999
Q ss_pred EEEEecc
Q 045516 486 IRLDFAR 492 (675)
Q Consensus 486 i~V~~a~ 492 (675)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998753
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=9.2e-08 Score=95.05 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=65.6
Q ss_pred CceEEEcCCC-----CCCCHHHHHHHhhhCCCeEEEEEeeCC-----CCCcccEEEEEecCHHHHHHHHH-hCCcccCCe
Q 045516 416 SKTLFVGNLP-----FSVEQADVQNFFSEVAEVVDVRLSSDA-----DGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNR 484 (675)
Q Consensus 416 ~~tlfV~nLp-----~~~te~~L~~~F~~~G~I~~v~i~~~~-----~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr 484 (675)
.+.|.+.|+- ..-.+++|++.|.+||.|..|.|+++. +++++||+||+|.+.++|.+||. |||..|.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4566666652 334678899999999999999998654 35899999999999999999998 999999999
Q ss_pred eEEEEecc
Q 045516 485 AIRLDFAR 492 (675)
Q Consensus 485 ~i~V~~a~ 492 (675)
.|+|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=1.8e-07 Score=92.86 Aligned_cols=68 Identities=19% Similarity=0.398 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhcccCcEEEEEeccc----CCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEecccc
Q 045516 533 DQVRASLEEHFGSCGEITRISVPKD----YDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 533 ~~i~~~L~~~F~~~G~I~~v~i~~d----~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~~ 600 (675)
+++...|.+.|.+||.|..|.|+++ ..+++++|++||+|.+.++|.+|+. |||++|+||.|++.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3455679999999999999999854 4456999999999999999999998 999999999999998753
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=2e-07 Score=83.03 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCCceEEEEecCCCC-cCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCC-HHHHHHHHH-h--CCceeC
Q 045516 515 GQAAHTIFIKGFDSS-VGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTD-ADSFNKALE-M--SGTEIG 589 (675)
Q Consensus 515 ~~~~~~lfV~nLp~~-~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~-~e~A~~Al~-l--ng~~~~ 589 (675)
...+..|||+||+.. ++.++ |+++|..||.|.+|.|.++.. .|||.|.+ ...|..|+. | ++..|+
T Consensus 15 ~~~G~il~v~~l~~~~~sred----Lke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCRED----LHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHH----HHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred ccCCeEEEEecCCCCcCCHHH----HHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 455899999999999 99887 889999999999999999854 59999999 789999987 7 478899
Q ss_pred CeeeEEecc
Q 045516 590 GYSLVVDEA 598 (675)
Q Consensus 590 Gr~l~V~~a 598 (675)
|..+++...
T Consensus 85 g~~~~~evL 93 (121)
T 1owx_A 85 NKEVTWEVL 93 (121)
T ss_dssp SSSEEEEEC
T ss_pred CcEEEEEEC
Confidence 988888654
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.4e-06 Score=71.53 Aligned_cols=71 Identities=21% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhC-----CCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCcccCCeeEEE
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEV-----AEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAI-ELNGQMLGNRAIRL 488 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~-----G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al-~l~g~~~~gr~i~V 488 (675)
..++|-|-|||.+++...|+.|+..| |.|..|.|+.+ -+-|+|+|.+...|.+|. .|||..|.||.|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 46899999999999999999999999 99999999987 566999999999999998 59999999999998
Q ss_pred Ee
Q 045516 489 DF 490 (675)
Q Consensus 489 ~~ 490 (675)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.3e-05 Score=68.11 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhh-----CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeEEE
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSE-----VAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAIRL 488 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~-----~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i~V 488 (675)
...++|.|.|||..+.++.|.-||+. =|+|..|.... +-|+|+|.+...|++.|....+.|.|.+|.|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 45689999999999999999999997 25788888762 6799999999999999998888999999999
Q ss_pred EeccccCCCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCcC
Q 045516 489 DFARERGAYTPYSGGNESNSFQKGGRGQAAHTIFIKGFDSSVG 531 (675)
Q Consensus 489 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 531 (675)
.....+. ..+|++.||+..+.
T Consensus 79 ~P~~~~~----------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA----------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC----------------------CCCCCCCSCCCCCC
T ss_pred EcCCCCC----------------------cceEeeecCCCCCC
Confidence 7754332 56788888887764
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.4e-05 Score=65.38 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=65.1
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhh-hcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEH-FGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKAL-EMSGTEIGGYSLVV 595 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~-F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al-~lng~~~~Gr~l~V 595 (675)
.++|-|-|||..++...|+.+|..+ +-.-|.|..|.+..|. +-|+|+|.+...|.+|. .|+|..|.||.|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 6899999999999999988877765 4455999999999994 56999999999999996 59999999999999
Q ss_pred ec
Q 045516 596 DE 597 (675)
Q Consensus 596 ~~ 597 (675)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=0.00018 Score=61.48 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=66.7
Q ss_pred ceEEEEecCCCCc-CHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 045516 518 AHTIFIKGFDSSV-GEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVV 595 (675)
Q Consensus 518 ~~~lfV~nLp~~~-te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V 595 (675)
.++|+|.||+..+ ..++++..|+.+|..|+.+....+.+... -..|.|.+.++|.+|.. ||+..|+|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5889999998866 77788788999999999888877777642 36899999999999976 9999999999999
Q ss_pred ecccc
Q 045516 596 DEAKQ 600 (675)
Q Consensus 596 ~~a~~ 600 (675)
.++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99974
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00031 Score=60.00 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEE
Q 045516 415 GSKTLFVGNLPFSV-E----QADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRL 488 (675)
Q Consensus 415 ~~~tlfV~nLp~~~-t----e~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V 488 (675)
-.++|+|.||+..+ . ...|+.+|..|+.+....+.+. -.-..|.|.+.++|.+|-. ||+..|+|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 35799999998655 2 2678999999999888776643 4567899999999999986 9999999999999
Q ss_pred Eeccc
Q 045516 489 DFARE 493 (675)
Q Consensus 489 ~~a~~ 493 (675)
.++..
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.00057 Score=60.00 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=60.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCC-eeEEEEec
Q 045516 415 GSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGN-RAIRLDFA 491 (675)
Q Consensus 415 ~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~g-r~i~V~~a 491 (675)
..+.|.|-++|... ...|..+|++||.|+..... ....+-+|.|.+..+|++||..||..|.| ..|-|..+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 46889999999885 77899999999999998873 23679999999999999999999999975 55666554
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.20 E-value=0.00094 Score=56.03 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=55.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC-C--CCcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA-D--GRFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~--g~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
+.|.|++||+++|++++.+.+..+..+....++... . -.....|||.|.+.+++..... ++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999999888777776554 1 2245679999999999999997 9998884
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.0011 Score=58.07 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=57.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCC-eeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGG-YSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~G-r~l~V~ 596 (675)
.+.|.|-+++...... +-.+|.+||.|........ ..+.+|.|.+..+|.+||..||..|+| ..|-|.
T Consensus 24 ~~wVtVFGFp~~~~~~-----VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQASASY-----ILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGGHHH-----HHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCEEEEECCCHHHHHH-----HHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 6889999998876543 6678999999999887322 579999999999999999999999985 666666
Q ss_pred ccc
Q 045516 597 EAK 599 (675)
Q Consensus 597 ~a~ 599 (675)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.006 Score=51.83 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=63.2
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhh-cccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEe
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHF-GSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVD 596 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F-~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~ 596 (675)
..+|.|.|||..+.++.|.-+|+... +.-|.|..|.... +-|+|.|.+...|.+.|....+.|+|..|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 68999999999999887555555432 3346888887755 46899999999999999988899999999998
Q ss_pred ccccCCCC
Q 045516 597 EAKQRGDF 604 (675)
Q Consensus 597 ~a~~r~~~ 604 (675)
...++...
T Consensus 80 P~~~~~~~ 87 (104)
T 2dhx_A 80 PAPPRAPA 87 (104)
T ss_dssp ECCCCCCC
T ss_pred cCCCCCcc
Confidence 77666554
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.51 E-value=0.008 Score=50.47 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=44.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~ 475 (675)
+-.+.|+| ++|......+|.++|+.||.|. |+.+.| ..|||.|.+++.|..||.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD------TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET------TEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC------CeEEEEecCHHHHHHHHH
Confidence 34566777 9999999999999999999665 444443 589999999999999997
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.44 E-value=0.0036 Score=55.66 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=57.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEE-EEecccCC------------CC-CeeeEEEEEeCCHHHHHHHHHh
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITR-ISVPKDYD------------TG-SVKGIAYLDFTDADSFNKALEM 583 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~-v~i~~d~~------------tG-~~rG~afV~F~~~e~A~~Al~l 583 (675)
...|.|-++|...... +-.+|++||.|.. +.+.+... .+ ....+..|+|.+..+|.+||..
T Consensus 7 e~~VtVFGFp~~~~~~-----VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-----VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp -CEEEEECCCGGGHHH-----HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred ceEEEEEecCHHHHHH-----HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 4678888998877765 4568999999876 32222100 00 1357899999999999999999
Q ss_pred CCceeCCeeeEEecccc
Q 045516 584 SGTEIGGYSLVVDEAKQ 600 (675)
Q Consensus 584 ng~~~~Gr~l~V~~a~~ 600 (675)
||..|+|..|-|....+
T Consensus 82 NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCeEeCcEEEEEEECCH
Confidence 99999999888877653
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.14 E-value=0.005 Score=51.88 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=43.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~ 477 (675)
+.|+| ++|......+|..+|+.||.| .|+.+.| ..|||.|.+++.|..||. ++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 4555543 589999999999999998 54
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.88 E-value=0.013 Score=52.05 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=56.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEE-EeeC--------C-----CC-CcccEEEEEecCHHHHHHHHHhCCcc
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVR-LSSD--------A-----DG-RFKGYGHVEFASVEDAHKAIELNGQM 480 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~-i~~~--------~-----~g-~~kG~afV~F~~~e~A~~Al~l~g~~ 480 (675)
...|.|=+.|... ...|..+|++||.|+.-. +.+. . .. ...++..|.|.+..+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4567777886554 566888999999997732 1110 0 01 13678899999999999999999999
Q ss_pred cCCeeEEEEecc
Q 045516 481 LGNRAIRLDFAR 492 (675)
Q Consensus 481 ~~gr~i~V~~a~ 492 (675)
|.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999977777664
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.62 E-value=0.049 Score=45.51 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=50.3
Q ss_pred eEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCC--CeeeEEEEEeCCHHHHHHHHH-hCCceeC
Q 045516 519 HTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTG--SVKGIAYLDFTDADSFNKALE-MSGTEIG 589 (675)
Q Consensus 519 ~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG--~~rG~afV~F~~~e~A~~Al~-lng~~~~ 589 (675)
..|.|++||++++++++.+.|.. +..+....++....+. ..-.-|||.|.+.+++....+ ++|+.|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~----~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP----MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS----CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC----cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47899999999999996655554 4566666665543222 234569999999999999988 9999884
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.54 E-value=0.0092 Score=50.32 Aligned_cols=67 Identities=9% Similarity=0.127 Sum_probs=49.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCC--CC-CcccEEEEEecCHHHHHHHHH-hCCcccC
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDA--DG-RFKGYGHVEFASVEDAHKAIE-LNGQMLG 482 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~g-~~kG~afV~F~~~e~A~~Al~-l~g~~~~ 482 (675)
+-.|.|++||+.+|+++|.+.+..+=.+....++... .+ ..-..|||.|.+.+++....+ ++|..|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4579999999999999988888776554322222211 11 123568999999999999997 9998873
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.25 E-value=0.008 Score=65.39 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=46.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccC
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLG 482 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~ 482 (675)
.|+|||. +|..+++.+|.++|++||.|.++.+..+. .-|+.|+|.+.+++..++........
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSSCCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 3899998 79999999999999999999999998653 47999999999999988764444443
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.87 E-value=0.21 Score=42.08 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=47.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCC--CeeeEEEEEeCCHHHHHHHHH-hCCceeCC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTG--SVKGIAYLDFTDADSFNKALE-MSGTEIGG 590 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG--~~rG~afV~F~~~e~A~~Al~-lng~~~~G 590 (675)
+-.|.|+.||++++++++.+.|..+ -.+.+..++....+. ..-.-|||.|.+.+++..-.+ ++|..|-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL----PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC----SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc----CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 5789999999999999955444443 334444443332221 122458999999999999988 99988843
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.67 E-value=0.32 Score=40.81 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=40.8
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE 582 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~ 582 (675)
.+.++| +||..+...+ |.++|..||.| .|+.+-| ..|||.|.+++.|..||.
T Consensus 16 ~HVf~l-~FP~ewKt~D----I~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSD----LYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHH----HHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHH----HHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHH
Confidence 566667 9999999988 78899999833 2333333 469999999999999998
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.47 E-value=0.16 Score=42.80 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=42.6
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS 584 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln 584 (675)
.+.++| +||..+...+ |.++|..||. ..|+.+-| ..|||.|.+++.|..||. ++
T Consensus 6 ~HV~~l-~FP~ewKt~D----i~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSD----LYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHH----HHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHH----HHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 456666 9999999988 8899999993 34444444 369999999999999998 54
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=86.32 E-value=0.36 Score=52.42 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=42.5
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHh
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEM 583 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~l 583 (675)
.+.|||. ++..+++.+ |.++|++||.|..+.+..+. .-|+.|+|.+.+.+..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~----l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENK----FLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CH----HHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHH----HHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 6899997 688888888 88999999999999988764 37999999999999988753
No 401
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=80.35 E-value=0.34 Score=51.12 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=10.9
Q ss_pred CCcCHHHHHHHHHhhhc
Q 045516 528 SSVGEDQVRASLEEHFG 544 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~ 544 (675)
..++.++|++....+..
T Consensus 227 ~~vt~~~l~~i~~~il~ 243 (358)
T 2pk2_A 227 ATVTLELLDELTHEFLQ 243 (358)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 35677777776666644
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.46 E-value=6.7 Score=43.14 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=43.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC
Q 045516 416 SKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LN 477 (675)
Q Consensus 416 ~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~ 477 (675)
.+.|+|+ +|..+...+|.++|+.||.| .|+.+. ...|||.|.+.+.|..+|. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------CCeEEEEECCHHHHHHHHHHHH
Confidence 4677777 88888999999999999954 444443 4579999999999999997 64
No 403
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=56.18 E-value=40 Score=28.61 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=37.1
Q ss_pred CCcCHHHHHHHHHhhhcccCcEEEE-EecccCCCCCeeeEEEEEeCCHHHHHHH
Q 045516 528 SSVGEDQVRASLEEHFGSCGEITRI-SVPKDYDTGSVKGIAYLDFTDADSFNKA 580 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~G~I~~v-~i~~d~~tG~~rG~afV~F~~~e~A~~A 580 (675)
.+++..+|++.|..+|..-..+..| .|...+..|...|||+| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 3677899999999998765555554 45556667888888866 6777766543
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=55.08 E-value=76 Score=25.73 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=46.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q 045516 414 GGSKTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE 475 (675)
Q Consensus 414 ~~~~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~ 475 (675)
...|-|-|-|||..+-..++.-.....|---.|..+ -|.|.|.|.+.+....||.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiq 64 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQ 64 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHH
Confidence 346889999999999988888777888876666655 5789999999999999996
No 405
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=47.94 E-value=57 Score=29.29 Aligned_cols=52 Identities=13% Similarity=0.325 Sum_probs=36.3
Q ss_pred CCcCHHHHHHHHHhhhcccCcEEEE-EecccCCCCCeeeEEEEEeCCHHHHHHH
Q 045516 528 SSVGEDQVRASLEEHFGSCGEITRI-SVPKDYDTGSVKGIAYLDFTDADSFNKA 580 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~G~I~~v-~i~~d~~tG~~rG~afV~F~~~e~A~~A 580 (675)
.+++..+|++.|..+|..--.+..| .|...+..|...|||+| |.+.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 3677889999999998765544444 45555666778888876 6676666543
No 406
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=46.49 E-value=42 Score=33.56 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEe
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLS 449 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~ 449 (675)
..+.|+||||+++..-|..++.....+..+.|+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 468999999999999999999865555554443
No 407
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=45.74 E-value=4.3 Score=35.39 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=3.5
Q ss_pred CCeEEEEE
Q 045516 441 AEVVDVRL 448 (675)
Q Consensus 441 G~I~~v~i 448 (675)
|..+.|+|
T Consensus 12 gk~V~V~L 19 (119)
T 1b34_A 12 HETVTIEL 19 (119)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 34444444
No 408
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=50.09 E-value=4.8 Score=38.18 Aligned_cols=6 Identities=0% Similarity=0.357 Sum_probs=2.5
Q ss_pred hCCcee
Q 045516 583 MSGTEI 588 (675)
Q Consensus 583 lng~~~ 588 (675)
|+-..|
T Consensus 116 mdaKNL 121 (215)
T 2l6f_A 116 VDAKNL 121 (215)
Confidence 444443
No 409
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=43.71 E-value=91 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=25.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEe
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLS 449 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~ 449 (675)
.-+.|+||||+++..-|..++.. ..+..+.|+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 57899999999999999999987 655544433
No 410
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=43.52 E-value=84 Score=26.31 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=37.4
Q ss_pred CCcCHHHHHHHHHhhhcccCcEEEEE-ecccCCCCCeeeEEEEEeCCHHHHHHH
Q 045516 528 SSVGEDQVRASLEEHFGSCGEITRIS-VPKDYDTGSVKGIAYLDFTDADSFNKA 580 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~G~I~~v~-i~~d~~tG~~rG~afV~F~~~e~A~~A 580 (675)
.+++..+|++.|..+|..-..+..|. |...+..|...|||+| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46778999999999988766555554 4455666778888865 6677666554
No 411
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=43.00 E-value=53 Score=25.45 Aligned_cols=67 Identities=7% Similarity=0.176 Sum_probs=43.0
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhhCCC-----eEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCcccCCeeEEEEe
Q 045516 418 TLFVGNL-PFSVEQADVQNFFSEVAE-----VVDVRLSSDADGRFKGYGHVEFASVEDAHKAIE-LNGQMLGNRAIRLDF 490 (675)
Q Consensus 418 tlfV~nL-p~~~te~~L~~~F~~~G~-----I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~-l~g~~~~gr~i~V~~ 490 (675)
+|||..- -..+...+|..+|..-+. |-.|.|. -.|.||+..... +..++. |++..+.|+.|.|..
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEE
Confidence 5666422 345677788888876543 6677776 458999987664 667776 999999999999876
Q ss_pred cc
Q 045516 491 AR 492 (675)
Q Consensus 491 a~ 492 (675)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 412
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=42.95 E-value=89 Score=26.21 Aligned_cols=51 Identities=10% Similarity=0.235 Sum_probs=36.9
Q ss_pred CCcCHHHHHHHHHhhhcccCcEEEE-EecccCCCCCeeeEEEEEeCCHHHHHH
Q 045516 528 SSVGEDQVRASLEEHFGSCGEITRI-SVPKDYDTGSVKGIAYLDFTDADSFNK 579 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~G~I~~v-~i~~d~~tG~~rG~afV~F~~~e~A~~ 579 (675)
.+++..+|++.|..+|..-..+..| .|...+..|...|||+| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4677899999999998876655555 45556667788888865 667766654
No 413
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=41.81 E-value=5.4 Score=34.76 Aligned_cols=10 Identities=0% Similarity=0.421 Sum_probs=5.8
Q ss_pred CCeeEEEEec
Q 045516 482 GNRAIRLDFA 491 (675)
Q Consensus 482 ~gr~i~V~~a 491 (675)
.|+.|.|.+.
T Consensus 11 ~gk~V~V~Lk 20 (119)
T 1b34_A 11 SHETVTIELK 20 (119)
T ss_dssp TTCEEEEEET
T ss_pred CCCEEEEEEc
Confidence 3566666654
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.85 E-value=37 Score=31.37 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=39.5
Q ss_pred eEEEcCCCCC---------CCHHHHHHHh--hhCCCeEEEEEeeCCCCCcccEEEEEecC-HHHHHHHHHh
Q 045516 418 TLFVGNLPFS---------VEQADVQNFF--SEVAEVVDVRLSSDADGRFKGYGHVEFAS-VEDAHKAIEL 476 (675)
Q Consensus 418 tlfV~nLp~~---------~te~~L~~~F--~~~G~I~~v~i~~~~~g~~kG~afV~F~~-~e~A~~Al~l 476 (675)
++.|-|+|.. .....|++.| ..|.++. |+.+....| +.|++.|.|.. ......|+.|
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHHH
Confidence 5677888761 4457899977 8998876 555555545 58999999974 4455566654
No 415
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.32 E-value=78 Score=26.38 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=45.6
Q ss_pred EEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeccccC
Q 045516 522 FIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALEMSGTEIGGYSLVVDEAKQR 601 (675)
Q Consensus 522 fV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~lng~~~~Gr~l~V~~a~~r 601 (675)
+|-.++..+..+++...+..+|++ -..+++. +.+ ..|-..+.++..+||++-.+...-+.|+|-...+.
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq---~ldL~y~-n~E-------llIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQ---SMDLHYT-NNE-------LVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSS---CEEEEEC-SSS-------SCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred EEEeccCCccHHHHHHHHHHHhCC---eeeEEEe-cce-------EEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 344566788999988888888754 4445444 222 57888999999999984333344455566555444
Q ss_pred C
Q 045516 602 G 602 (675)
Q Consensus 602 ~ 602 (675)
.
T Consensus 89 ~ 89 (103)
T 2cu1_A 89 S 89 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 416
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=34.49 E-value=1.2e+02 Score=24.66 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=39.7
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE 582 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~ 582 (675)
.+.|.|-|+|..+-..++.-.++.+ |---+|..+ .|.|.|.|.+.+....|++
T Consensus 12 nclikiinipqgtlkaevvlavrhl----gyefycdyi--------dgqamirfqnsdeqrlaiq 64 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHL----GYEFYCDYI--------DGQAMIRFQNSDEQRLAIQ 64 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTT----CCCEEEEEC--------SSCEEEEESSHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhc----CeeEeeeee--------cCeeEEEecCChHHHHHHH
Confidence 5788899999988877766555544 444455443 4679999999999999987
No 417
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=30.98 E-value=1.6e+02 Score=25.99 Aligned_cols=52 Identities=15% Similarity=0.357 Sum_probs=35.8
Q ss_pred CCcCHHHHHHHHHhhhcccCcEEEE-EecccCCCCCeeeEEEEEeCCHHHHHHH
Q 045516 528 SSVGEDQVRASLEEHFGSCGEITRI-SVPKDYDTGSVKGIAYLDFTDADSFNKA 580 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~G~I~~v-~i~~d~~tG~~rG~afV~F~~~e~A~~A 580 (675)
.+++..+|++.|..+|..--.+..| .|...+..|...|||+| |.+.+.|...
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 3577899999998888765454444 45555666778888876 6666666543
No 418
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=30.12 E-value=89 Score=34.11 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=39.9
Q ss_pred ceEEEEecCCCCcCHHHHHHHHHhhhcccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hC
Q 045516 518 AHTIFIKGFDSSVGEDQVRASLEEHFGSCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MS 584 (675)
Q Consensus 518 ~~~lfV~nLp~~~te~~i~~~L~~~F~~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-ln 584 (675)
.+.++|+ ++..+...+ |.++|..||.| .|+.+.+ ..|||.|.+.+.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~----i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSD----LYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHH----HHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHH----HHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566665 888888766 67888888853 4444433 469999999999999987 64
No 419
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=29.84 E-value=1.3e+02 Score=23.14 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=35.3
Q ss_pred CcCHHHHHHHHHhhhc-ccCcEEEEEecccCCCCCeeeEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeccc
Q 045516 529 SVGEDQVRASLEEHFG-SCGEITRISVPKDYDTGSVKGIAYLDFTDADSFNKALE-MSGTEIGGYSLVVDEAK 599 (675)
Q Consensus 529 ~~te~~i~~~L~~~F~-~~G~I~~v~i~~d~~tG~~rG~afV~F~~~e~A~~Al~-lng~~~~Gr~l~V~~a~ 599 (675)
.+...+|...|....+ .-..|-.|.|..+ |.||+-.... +..++. |++..+.|+.+.|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 4455555444444332 1225777777554 6788776543 566676 99999999999887653
No 420
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=29.10 E-value=1e+02 Score=30.21 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=25.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEe
Q 045516 418 TLFVGNLPFSVEQADVQNFFSEVAEVVDVRLS 449 (675)
Q Consensus 418 tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~ 449 (675)
-..|+||||+++..-|..++.....+..+.|+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 45999999999999999999876655554443
No 421
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=28.66 E-value=97 Score=25.80 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=33.2
Q ss_pred CCcCHHHHHHHHHhhhcccCcEEEEE-ecccCCCCCeeeEEEEEeCCHHHHHH
Q 045516 528 SSVGEDQVRASLEEHFGSCGEITRIS-VPKDYDTGSVKGIAYLDFTDADSFNK 579 (675)
Q Consensus 528 ~~~te~~i~~~L~~~F~~~G~I~~v~-i~~d~~tG~~rG~afV~F~~~e~A~~ 579 (675)
.+++..+|++.|..+|..-..+..|. |...+..|...|||+| |.+.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35678899999999987655554443 3344555777888765 455554443
No 422
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=28.46 E-value=55 Score=34.84 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=45.2
Q ss_pred ceEEEcCCCCCC----CHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCeeE
Q 045516 417 KTLFVGNLPFSV----EQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRAI 486 (675)
Q Consensus 417 ~tlfV~nLp~~~----te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~i 486 (675)
.--+||||..-. -...|.++..+||.|..++|. +.-+|...+++.+..+|.-++..|.+|+.
T Consensus 15 ~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~~~~~~f~~rp~ 80 (494)
T 3swz_A 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLIKKGKDFSGRPQ 80 (494)
T ss_dssp CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHTTTTTTTBBCCC
T ss_pred CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHHhCcHhhCCCCC
Confidence 456899987432 245678888899999988874 35678889999999998755555655543
No 423
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.22 E-value=1.3e+02 Score=22.42 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNG 478 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g 478 (675)
.+|.|.||.-..-...|...|.. ..|..+.+-.. .+.+.|.|.+.+....+|.--|
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHcC
Confidence 57999999988888999999999 77888777533 5678888886666777776333
No 424
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=26.56 E-value=37 Score=35.89 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEcCCCC---CCCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCee
Q 045516 420 FVGNLPF---SVEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNRA 485 (675)
Q Consensus 420 fV~nLp~---~~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr~ 485 (675)
|||||.. .-....|.++..+||.|..++|. +.-+|...+++.++.++.-++..|.+|.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~i~~vl~~~~~~f~~r~ 80 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA--------WTPVVVLNGLAAVREALVTHGEDTADRP 80 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET--------TEEEEEEEHHHHHHHHHTTTGGGSCBCC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC--------CeeEEEECCHHHHHHHHHhCChhhcCCC
Confidence 6788752 33345678888999999888873 3345777888888888765555554443
No 425
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=26.53 E-value=8.5 Score=36.71 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=4.9
Q ss_pred CceEEEcCC
Q 045516 416 SKTLFVGNL 424 (675)
Q Consensus 416 ~~tlfV~nL 424 (675)
++.++|+||
T Consensus 5 N~V~LiGrL 13 (199)
T 3eiv_A 5 TVITVVGNL 13 (199)
T ss_dssp CEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 345556655
No 426
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=21.55 E-value=81 Score=33.13 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=43.1
Q ss_pred ceEEEcCCCCC---CCHHHHHHHhhhCCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCCe
Q 045516 417 KTLFVGNLPFS---VEQADVQNFFSEVAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGNR 484 (675)
Q Consensus 417 ~tlfV~nLp~~---~te~~L~~~F~~~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~gr 484 (675)
..-+||||..- --...|.+++.+||.|..++|. +.-+|.+.+++.+..++.-+...|.++
T Consensus 17 ~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g--------~~~~vvv~~~~~v~~il~~~~~~f~~r 79 (476)
T 3e6i_A 17 PLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG--------SQRMVVMHGYKAVKEALLDYKDEFSGR 79 (476)
T ss_dssp CBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHHTSTTTTCEE
T ss_pred CcccccChhhhccccHhHHHHHHHHHhCCEEEEEEC--------CccEEEECCHHHHHHHHhcchHhhCCC
Confidence 34567887532 2356688889999999888763 457888999999999997555455443
No 427
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.60 E-value=56 Score=33.92 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=34.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhh---------CCCeEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCcccCC
Q 045516 417 KTLFVGNLPFSVEQADVQNFFSE---------VAEVVDVRLSSDADGRFKGYGHVEFASVEDAHKAIELNGQMLGN 483 (675)
Q Consensus 417 ~tlfV~nLp~~~te~~L~~~F~~---------~G~I~~v~i~~~~~g~~kG~afV~F~~~e~A~~Al~l~g~~~~g 483 (675)
..++|+||||+++..-|..+|.. || +.. +|.|-..+-|.+.+.--|....|
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~-~~~---------------m~lmvQkEvA~Rl~A~PGsk~yg 202 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFG-KVK---------------MLLWMPSTTARKLLARPGMHSRS 202 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGS-EEE---------------EEEEEEHHHHHHHHCCTTSTTCC
T ss_pred ceEEEEECCCchHHHHHHHHHHhccccccccccC-cce---------------EEEEeEHHHHHHhcCCCCCcccc
Confidence 35899999999999999998875 33 222 23444567777777644544444
Done!