Query 045518
Match_columns 108
No_of_seqs 289 out of 1215
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03234 cytochrome P450 83B1; 99.9 9.3E-27 2E-31 171.1 7.5 105 1-105 352-498 (499)
2 KOG0157 Cytochrome P450 CYP4/C 99.9 7.2E-27 1.6E-31 172.3 6.0 99 1-103 356-495 (497)
3 KOG0158 Cytochrome P450 CYP3/C 99.9 7.2E-27 1.6E-31 171.3 6.0 101 1-103 358-498 (499)
4 KOG0159 Cytochrome P450 CYP11/ 99.9 8.2E-27 1.8E-31 169.8 5.3 99 1-103 381-517 (519)
5 PLN02183 ferulate 5-hydroxylas 99.9 1.8E-26 4E-31 170.4 7.2 104 1-105 368-511 (516)
6 PLN02966 cytochrome P450 83A1 99.9 3.4E-26 7.4E-31 168.5 7.7 107 1-107 355-501 (502)
7 PLN02971 tryptophan N-hydroxyl 99.9 2.6E-26 5.6E-31 170.7 6.7 103 1-105 391-535 (543)
8 PF00067 p450: Cytochrome P450 99.9 2.1E-26 4.6E-31 164.2 5.6 99 1-100 326-463 (463)
9 PLN02687 flavonoid 3'-monooxyg 99.9 4.9E-26 1.1E-30 168.2 7.2 105 1-105 361-508 (517)
10 KOG0156 Cytochrome P450 CYP2 s 99.9 4.4E-26 9.4E-31 167.7 6.4 100 1-105 350-487 (489)
11 PTZ00404 cytochrome P450; Prov 99.9 6.4E-26 1.4E-30 166.1 6.8 76 1-76 347-457 (482)
12 PLN02394 trans-cinnamate 4-mon 99.9 5.4E-26 1.2E-30 167.2 6.4 101 1-103 357-501 (503)
13 PLN00168 Cytochrome P450; Prov 99.9 9.1E-26 2E-30 166.8 6.7 103 1-104 371-517 (519)
14 PLN02290 cytokinin trans-hydro 99.9 3.2E-25 6.9E-30 163.6 7.2 99 1-103 379-514 (516)
15 PLN02774 brassinosteroid-6-oxi 99.9 2.2E-25 4.8E-30 162.8 6.2 96 1-102 331-462 (463)
16 PLN02169 fatty acid (omega-1)- 99.9 2.6E-25 5.7E-30 164.0 6.6 99 1-103 359-499 (500)
17 PLN00110 flavonoid 3',5'-hydro 99.9 3.7E-25 8E-30 163.3 6.8 101 1-104 353-497 (504)
18 PLN03112 cytochrome P450 famil 99.9 5.1E-25 1.1E-29 162.5 7.4 104 1-104 360-508 (514)
19 PLN02655 ent-kaurene oxidase 99.9 4.5E-25 9.7E-30 161.3 6.8 102 1-104 325-464 (466)
20 PLN02738 carotene beta-ring hy 99.9 7.1E-25 1.5E-29 165.6 7.9 102 1-105 454-596 (633)
21 PLN03141 3-epi-6-deoxocathaste 99.9 5.2E-25 1.1E-29 160.4 5.9 96 1-103 319-449 (452)
22 PLN02500 cytochrome P450 90B1 99.9 6.9E-25 1.5E-29 161.1 6.3 96 1-102 348-488 (490)
23 PLN02936 epsilon-ring hydroxyl 99.9 1.7E-24 3.7E-29 159.2 7.7 102 1-105 341-483 (489)
24 PLN03018 homomethionine N-hydr 99.9 2.2E-24 4.7E-29 160.3 7.5 101 1-103 378-523 (534)
25 PLN02426 cytochrome P450, fami 99.9 2E-24 4.4E-29 159.4 6.9 103 1-105 358-501 (502)
26 PLN03195 fatty acid omega-hydr 99.9 1.6E-24 3.5E-29 160.0 5.9 99 1-103 376-515 (516)
27 PLN02302 ent-kaurenoic acid ox 99.9 3E-24 6.6E-29 157.1 5.9 99 1-104 355-488 (490)
28 PLN02196 abscisic acid 8'-hydr 99.9 3.8E-24 8.1E-29 156.4 5.4 97 1-102 331-461 (463)
29 PLN02987 Cytochrome P450, fami 99.9 9.6E-24 2.1E-28 154.9 6.3 97 1-103 334-468 (472)
30 KOG0684 Cytochrome P450 [Secon 99.9 2.3E-22 5E-27 144.5 4.8 100 2-106 339-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.8 7.1E-22 1.5E-26 143.0 4.6 75 1-76 284-387 (411)
32 PLN02648 allene oxide synthase 99.7 1.3E-18 2.7E-23 128.3 4.5 76 1-77 338-463 (480)
33 PF12508 DUF3714: Protein of u 88.5 0.48 1E-05 31.7 2.6 34 1-36 57-90 (200)
34 PF09201 SRX: SRX; InterPro: 70.7 4.2 9E-05 25.8 2.1 22 47-68 19-40 (148)
35 TIGR03779 Bac_Flav_CT_M Bacter 69.7 4.1 8.8E-05 30.3 2.2 34 1-36 260-293 (410)
36 PF12444 Sox_N: Sox developmen 55.0 8.7 0.00019 22.2 1.4 20 56-75 60-79 (84)
37 KOG3506 40S ribosomal protein 54.0 5.5 0.00012 21.0 0.4 10 40-49 13-22 (56)
38 COG5598 Trimethylamine:corrino 52.4 14 0.00029 28.4 2.4 65 3-71 106-173 (526)
39 PRK06186 hypothetical protein; 49.9 12 0.00026 25.6 1.7 28 28-58 55-99 (229)
40 PF11138 DUF2911: Protein of u 37.3 30 0.00065 22.0 2.0 16 21-36 52-67 (145)
41 PF01705 CX: CX module; Inter 34.1 58 0.0013 17.3 2.5 32 20-51 21-55 (61)
42 PF15442 DUF4629: Domain of un 33.3 18 0.00039 23.2 0.4 10 45-54 128-137 (150)
43 COG0504 PyrG CTP synthase (UTP 28.1 35 0.00076 26.3 1.3 30 27-59 344-390 (533)
44 KOG2387 CTP synthase (UTP-ammo 27.6 48 0.001 25.4 1.9 22 37-61 391-412 (585)
45 COG1759 5-formaminoimidazole-4 26.2 41 0.00089 24.6 1.3 58 4-62 280-351 (361)
46 PHA03162 hypothetical protein; 25.0 88 0.0019 19.7 2.5 24 42-65 2-25 (135)
47 PTZ00218 40S ribosomal protein 24.4 31 0.00068 18.2 0.4 13 40-52 11-25 (54)
48 PF14550 Peptidase_U35_2: Puta 22.9 44 0.00096 20.6 0.9 17 20-36 72-88 (122)
49 PF02663 FmdE: FmdE, Molybdenu 22.8 54 0.0012 20.0 1.3 23 45-67 4-26 (131)
50 PF11012 DUF2850: Protein of u 22.1 75 0.0016 18.1 1.7 28 4-31 16-43 (79)
No 1
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.94 E-value=9.3e-27 Score=171.09 Aligned_cols=105 Identities=41% Similarity=0.825 Sum_probs=90.4
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC------------------------------------------ee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS------------------------------------------RL 38 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt------------------------------------------~~ 38 (108)
|||+|+||++|+++..++|.+.+|++++||.||+|| .+
T Consensus 352 avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~ 431 (499)
T PLN03234 352 AVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFEL 431 (499)
T ss_pred HHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceE
Confidence 589999999999998667999999999999999999 36
Q ss_pred eeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEec
Q 045518 39 LPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYC 105 (108)
Q Consensus 39 ~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 105 (108)
+|||.|+|+|+|+++|++|++++++.++++|+|++.++..+..+.....+++...++.++.+.+++|
T Consensus 432 ~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 432 LPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 8999999999999999999999999999999999987643444555556676666677888888776
No 2
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.93 E-value=7.2e-27 Score=172.30 Aligned_cols=99 Identities=32% Similarity=0.539 Sum_probs=80.4
Q ss_pred CeEeeecccCCCcccccceeeccceEE-cCEEeCCCC----------------------------------------eee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIV-NGFHIPKKS----------------------------------------RLL 39 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~-~g~~ip~gt----------------------------------------~~~ 39 (108)
+||+||||+||++|.. .|.+.+|+++ +||.||||+ +|+
T Consensus 356 ~vi~EsLRLyppvp~~-~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fi 434 (497)
T KOG0157|consen 356 MVIKESLRLYPPVPLV-ARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFI 434 (497)
T ss_pred HHHHHHhccCCCCchh-hcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCcccc
Confidence 4799999999999985 6999999999 589999999 689
Q ss_pred eecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEE
Q 045518 40 PFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIAS 103 (108)
Q Consensus 40 pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 103 (108)
|||+|+|+|+|++||++|+++++++++++|+|++..+.. ........+.+..+.++++.+|
T Consensus 435 pFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~---~~~~~~~~l~~~~gl~v~~~~r 495 (497)
T KOG0157|consen 435 PFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK---PKPVPELTLRPKNGLKVKLRPR 495 (497)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC---ceeeeEEEEEecCCeEEEEEeC
Confidence 999999999999999999999999999999999887641 2233333333444544444443
No 3
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=7.2e-27 Score=171.33 Aligned_cols=101 Identities=39% Similarity=0.595 Sum_probs=84.8
Q ss_pred CeEeeecccCCCcccccceeeccceEEc-CEEeCCCC--------------------------------------eeeee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVN-GFHIPKKS--------------------------------------RLLPF 41 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~-g~~ip~gt--------------------------------------~~~pF 41 (108)
+||+||||+||+++. +.|.|++|++++ ++.||||+ .|+||
T Consensus 358 ~Vi~ETLR~yP~~~~-~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~~~~~~~ylPF 436 (499)
T KOG0158|consen 358 MVIKETLRLYPPAPF-LNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNKSRHPGAYLPF 436 (499)
T ss_pred HHHHHHHhhCCCccc-ccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCcccccCCccccCC
Confidence 589999999999999 679999999999 99999999 79999
Q ss_pred cCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccc-eeceEEecCceEEEEEE
Q 045518 42 GSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTE-EFGLITLRAKHLLAIAS 103 (108)
Q Consensus 42 g~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r 103 (108)
|.|||+|+|++||.+|+|+++++||++|+++..+.... ...... ...+.+..++++++++|
T Consensus 437 G~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~-~~~~~~~~~~l~pk~gi~Lkl~~r 498 (499)
T KOG0158|consen 437 GVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTII-PLEGDPKGFTLSPKGGIWLKLEPR 498 (499)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccC-cccCCccceeeecCCceEEEEEeC
Confidence 99999999999999999999999999999999884322 222222 33344566688888776
No 4
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=8.2e-27 Score=169.78 Aligned_cols=99 Identities=28% Similarity=0.498 Sum_probs=83.8
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC--------------------------------------eeeeec
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS--------------------------------------RLLPFG 42 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt--------------------------------------~~~pFg 42 (108)
|||||++|+||.++.+ .|...+|..++||.||||| .++|||
T Consensus 381 AcIKEtlRlyPv~~~~-~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~~~~~pF~~LPFG 459 (519)
T KOG0159|consen 381 ACIKETLRLYPVVPGN-GRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPSTKTIHPFASLPFG 459 (519)
T ss_pred HHHHhhhceecccccc-ccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhcccccCCCCCceecCCC
Confidence 7999999999999986 6999999999999999999 579999
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEE
Q 045518 43 SGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIAS 103 (108)
Q Consensus 43 ~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 103 (108)
.|+|+|+|++||.+|+.+++++++++|+++...+ .+++....+.+.+..+..+++++|
T Consensus 460 fG~R~C~GRRiAElEl~llLarllr~f~V~~~~~---~pv~~~~~~il~P~~~l~f~f~~r 517 (519)
T KOG0159|consen 460 FGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE---EPVEYVYRFILVPNRPLRFKFRPR 517 (519)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHhcceeecCC---CCccceeEEEEcCCCCcceeeeeC
Confidence 9999999999999999999999999999998764 245555555544555555555444
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.93 E-value=1.8e-26 Score=170.41 Aligned_cols=104 Identities=57% Similarity=1.024 Sum_probs=84.5
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC----------------------------------------eeee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS----------------------------------------RLLP 40 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt----------------------------------------~~~p 40 (108)
|||+|+||++|++|.. .|.+.+|++++||.||||| .|+|
T Consensus 368 avi~EtlRl~p~~p~~-~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lp 446 (516)
T PLN02183 368 CTLKETLRLHPPIPLL-LHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIP 446 (516)
T ss_pred HHHHHHhccCCCccce-eeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecC
Confidence 6899999999999986 5999999999999999999 3789
Q ss_pred ecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEec
Q 045518 41 FGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYC 105 (108)
Q Consensus 41 Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 105 (108)
||.|+|+|+|++||++|+++++|.++++|++++.++......+....++...+...++++..++|
T Consensus 447 FG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 447 FGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 99999999999999999999999999999999877632222333334444434555666666665
No 6
>PLN02966 cytochrome P450 83A1
Probab=99.93 E-value=3.4e-26 Score=168.47 Aligned_cols=107 Identities=40% Similarity=0.774 Sum_probs=88.6
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC----------------------------------------eeee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS----------------------------------------RLLP 40 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt----------------------------------------~~~p 40 (108)
|||+|+||++|+++..++|.+.+|++++||.||+|| .|+|
T Consensus 355 avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~p 434 (502)
T PLN02966 355 ALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIP 434 (502)
T ss_pred HHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccC
Confidence 589999999999998668999999999999999999 4789
Q ss_pred ecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEeccc
Q 045518 41 FGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYCLK 107 (108)
Q Consensus 41 Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~ 107 (108)
||.|+|+|+|++||.+|+++++|.++++|+|++.++...+.++.+...++...++.++++..++-+|
T Consensus 435 Fg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
T PLN02966 435 FGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEKVNK 501 (502)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEeCCC
Confidence 9999999999999999999999999999999988764334455455555554344477777766543
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=99.93 E-value=2.6e-26 Score=170.66 Aligned_cols=103 Identities=28% Similarity=0.598 Sum_probs=86.2
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-----------------------------------------eee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-----------------------------------------RLL 39 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-----------------------------------------~~~ 39 (108)
|||+|+||++|+++..++|.+.+|++++||.||||+ .|+
T Consensus 391 avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~ 470 (543)
T PLN02971 391 AIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFI 470 (543)
T ss_pred HHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccC
Confidence 689999999999998778999999999999999999 279
Q ss_pred eecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceec-eEEecCceEEEEEEec
Q 045518 40 PFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFG-LITLRAKHLLAIASYC 105 (108)
Q Consensus 40 pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~r 105 (108)
|||.|+|+|+|++||++|++++++.|+++|+|+++++.. ..+..+.++ +..+++..+.+++|..
T Consensus 471 pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (543)
T PLN02971 471 SFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSET--RVELMESSHDMFLSKPLVMVGELRLS 535 (543)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCC--CcchhhhcCcccccccceeeeeecCC
Confidence 999999999999999999999999999999999876532 234433343 3356677777777744
No 8
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.93 E-value=2.1e-26 Score=164.18 Aligned_cols=99 Identities=38% Similarity=0.688 Sum_probs=80.5
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC---------------------------------------eeeee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS---------------------------------------RLLPF 41 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt---------------------------------------~~~pF 41 (108)
|||+|+||++|+++..++|.+.+|++++||.||||| .|+||
T Consensus 326 a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~F 405 (463)
T PF00067_consen 326 AVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPF 405 (463)
T ss_dssp HHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 589999999999996678999999999999999999 48999
Q ss_pred cCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEE
Q 045518 42 GSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLA 100 (108)
Q Consensus 42 g~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (108)
|.|+|.|+|++||++|++++++.++++|++++.++... .........+.++++..|+|
T Consensus 406 g~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 406 GAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEP-EPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp ESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSG-GEEECSCSSSEEESSSEEEE
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCC-CCccccCceEeeCCCcEEeC
Confidence 99999999999999999999999999999999765422 22222222344666666654
No 9
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.93 E-value=4.9e-26 Score=168.17 Aligned_cols=105 Identities=46% Similarity=0.879 Sum_probs=86.6
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-------------------------------------------e
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-------------------------------------------R 37 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-------------------------------------------~ 37 (108)
|||+|+||++|+++..++|.+.+|++++||.||+|| .
T Consensus 361 a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~ 440 (517)
T PLN02687 361 AVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFE 440 (517)
T ss_pred HHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCcee
Confidence 589999999999998778999999999999999999 2
Q ss_pred eeeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEec
Q 045518 38 LLPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYC 105 (108)
Q Consensus 38 ~~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 105 (108)
++|||.|+|.|+|++||.+|++++++.|+++|++++.++....+++....+.+.+.++.++.++.++|
T Consensus 441 ~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 508 (517)
T PLN02687 441 LIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPR 508 (517)
T ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccC
Confidence 58999999999999999999999999999999999876632223333334455555666677777666
No 10
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=4.4e-26 Score=167.68 Aligned_cols=100 Identities=46% Similarity=0.803 Sum_probs=84.5
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC--------------------------------------eeeeec
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS--------------------------------------RLLPFG 42 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt--------------------------------------~~~pFg 42 (108)
|||+|++|+||++|++++|.+++|+.++||.||||| .++|||
T Consensus 350 Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~~~~~~iPFG 429 (489)
T KOG0156|consen 350 AVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKGLDFKLIPFG 429 (489)
T ss_pred HHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCccccCCceEecCCC
Confidence 689999999999999999999999999999999999 579999
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEec
Q 045518 43 SGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYC 105 (108)
Q Consensus 43 ~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 105 (108)
.|+|+|+|..+|.+++.++++.++++|+|+++++ .++..... +......++...+.+|
T Consensus 430 ~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~~-~~~~~~~pl~~~~~~r 487 (489)
T KOG0156|consen 430 SGRRICPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEAG-LTLKKKKPLKAVPVPR 487 (489)
T ss_pred CCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCcccc-cceecCCcceeeeecC
Confidence 9999999999999999999999999999999876 23343332 4445555555555544
No 11
>PTZ00404 cytochrome P450; Provisional
Probab=99.93 E-value=6.4e-26 Score=166.10 Aligned_cols=76 Identities=30% Similarity=0.626 Sum_probs=71.6
Q ss_pred CeEeeecccCCCcccccceeeccceEE-cCEEeCCCC----------------------------------eeeeecCCC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIV-NGFHIPKKS----------------------------------RLLPFGSGR 45 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~-~g~~ip~gt----------------------------------~~~pFg~G~ 45 (108)
|||+|+||+||+++..++|.+.+|+++ +||.||+|| .|+|||.|+
T Consensus 347 avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~~~~~~~pFg~G~ 426 (482)
T PTZ00404 347 AIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDSNDAFMPFSIGP 426 (482)
T ss_pred HHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCCCCCceeccCCCC
Confidence 589999999999997668999999999 999999999 679999999
Q ss_pred CCCCChhhhHHHHHHHHHHHhhhceEEccCC
Q 045518 46 RVCPGMQLGLTIVKQVIAQLVHCFEWELPRG 76 (108)
Q Consensus 46 r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 76 (108)
|+|+|++||++|++++++.++++|++++.++
T Consensus 427 R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~ 457 (482)
T PTZ00404 427 RNCVGQQFAQDELYLAFSNIILNFKLKSIDG 457 (482)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcEEecCCC
Confidence 9999999999999999999999999998765
No 12
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.93 E-value=5.4e-26 Score=167.21 Aligned_cols=101 Identities=43% Similarity=0.721 Sum_probs=83.3
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-----------------------------------------eee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-----------------------------------------RLL 39 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-----------------------------------------~~~ 39 (108)
|||+|+||++|+++...+|.+.+|++++||.||+|| .|+
T Consensus 357 avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~ 436 (503)
T PLN02394 357 AVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFL 436 (503)
T ss_pred HHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCcee
Confidence 689999999999999878999999999999999999 478
Q ss_pred eecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceec-eE--EecCceEEEEEE
Q 045518 40 PFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFG-LI--TLRAKHLLAIAS 103 (108)
Q Consensus 40 pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~r 103 (108)
|||.|+|+|+|++||.+|+++++|.++++|++++.++.. .++....++ +. .+.++.+++.+|
T Consensus 437 pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r 501 (503)
T PLN02394 437 PFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS--KIDVSEKGGQFSLHIAKHSTVVFKPR 501 (503)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC--cCccccccCceeeccCCCceEEeecC
Confidence 999999999999999999999999999999999876641 233333332 22 455666666655
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=99.92 E-value=9.1e-26 Score=166.84 Aligned_cols=103 Identities=32% Similarity=0.630 Sum_probs=83.1
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC--------------------------------------------
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-------------------------------------------- 36 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-------------------------------------------- 36 (108)
|||+|+||++|+++..++|.+.+|++++||.|||||
T Consensus 371 avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~ 450 (519)
T PLN00168 371 AVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREI 450 (519)
T ss_pred HHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCc
Confidence 589999999999998778999999999999999999
Q ss_pred eeeeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEe
Q 045518 37 RLLPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASY 104 (108)
Q Consensus 37 ~~~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 104 (108)
.|+|||.|+|+|+|++||.+|++++++.|+++|+|++.++. ..+..........++.++++++++|.
T Consensus 451 ~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~R~ 517 (519)
T PLN00168 451 RMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD-EVDFAEKREFTTVMAKPLRARLVPRR 517 (519)
T ss_pred ceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC-cCChhhhceeEEeecCCcEEEEEecc
Confidence 26899999999999999999999999999999999987653 11221112223334556777776654
No 14
>PLN02290 cytokinin trans-hydroxylase
Probab=99.92 E-value=3.2e-25 Score=163.63 Aligned_cols=99 Identities=27% Similarity=0.468 Sum_probs=80.8
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-------------------------------------eeeeecC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-------------------------------------RLLPFGS 43 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-------------------------------------~~~pFg~ 43 (108)
|||+|+||++|+++. ++|.+.+|++++||.||+|| .|+|||.
T Consensus 379 avi~EtlRl~p~~~~-~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~~~~~~~~pFG~ 457 (516)
T PLN02290 379 MVINESLRLYPPATL-LPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFAPGRHFIPFAA 457 (516)
T ss_pred HHHHHHHHcCCCccc-cceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCCCCCCeEecCCC
Confidence 689999999999996 68999999999999999999 3799999
Q ss_pred CCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEE
Q 045518 44 GRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIAS 103 (108)
Q Consensus 44 G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 103 (108)
|+|+|+|++||++|++++++.++++|++++.++.. ........+.+..+.++++++|
T Consensus 458 G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~ 514 (516)
T PLN02290 458 GPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR---HAPVVVLTIKPKYGVQVCLKPL 514 (516)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc---cCccceeeecCCCCCeEEEEeC
Confidence 99999999999999999999999999999876531 1111223333455666666554
No 15
>PLN02774 brassinosteroid-6-oxidase
Probab=99.92 E-value=2.2e-25 Score=162.82 Aligned_cols=96 Identities=29% Similarity=0.464 Sum_probs=80.1
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC------------------------------------eeeeecCC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS------------------------------------RLLPFGSG 44 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt------------------------------------~~~pFg~G 44 (108)
|||+|+||++|+++. ++|.+.+|++++||.||||+ .++|||+|
T Consensus 331 a~ikE~lRl~P~v~~-~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~~~~~~lpFG~G 409 (463)
T PLN02774 331 AVIFETSRLATIVNG-VLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLESHNYFFLFGGG 409 (463)
T ss_pred HHHHHHHhcCCCCCC-cccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcCCCccccCcCCC
Confidence 589999999999986 46999999999999999999 36899999
Q ss_pred CCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEE
Q 045518 45 RRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIA 102 (108)
Q Consensus 45 ~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (108)
+|.|+|++||.+|++++++.|+++|+|++.++. +.... ..+.++++.++++++
T Consensus 410 ~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~---~~~~~--~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 410 TRLCPGKELGIVEISTFLHYFVTRYRWEEVGGD---KLMKF--PRVEAPNGLHIRVSP 462 (463)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHHhceEEECCCC---ccccC--CCCCCCCCceEEeee
Confidence 999999999999999999999999999997653 11111 123356777777763
No 16
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.92 E-value=2.6e-25 Score=164.00 Aligned_cols=99 Identities=20% Similarity=0.420 Sum_probs=78.7
Q ss_pred CeEeeecccCCCcccccceeeccceE-EcCEEeCCCC-----------------------------------------ee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCI-VNGFHIPKKS-----------------------------------------RL 38 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~-~~g~~ip~gt-----------------------------------------~~ 38 (108)
|||+|+||+||++|... |.+.+|.+ ++|+.||||+ .|
T Consensus 359 avi~EtLRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~ 437 (500)
T PLN02169 359 AALSESMRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKF 437 (500)
T ss_pred HHHHHHHhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccc
Confidence 58999999999999864 76666655 5999999999 47
Q ss_pred eeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEE
Q 045518 39 LPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIAS 103 (108)
Q Consensus 39 ~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 103 (108)
+|||+|+|+|+|++||++|++++++.++++|+++++++. ++.......+.+..+..+++++|
T Consensus 438 lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~---~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 438 MAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH---KIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred cCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC---CcccccceEEecCCCEEEEEEeC
Confidence 999999999999999999999999999999999987542 22333333444556666666554
No 17
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.92 E-value=3.7e-25 Score=163.30 Aligned_cols=101 Identities=42% Similarity=0.880 Sum_probs=82.6
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC------------------------------------------ee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS------------------------------------------RL 38 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt------------------------------------------~~ 38 (108)
|||+|+||++|+++..++|.+.+|++++||.||+|| .+
T Consensus 353 avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~ 432 (504)
T PLN00110 353 AICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFEL 432 (504)
T ss_pred HHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeE
Confidence 589999999999998778999999999999999999 26
Q ss_pred eeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceE--EecCceEEEEEEe
Q 045518 39 LPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLI--TLRAKHLLAIASY 104 (108)
Q Consensus 39 ~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~ 104 (108)
+|||.|+|.|+|++||.+|++++++.|+++|+|++.++. +.......++. +..++.+++++|.
T Consensus 433 ~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 433 IPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTPRL 497 (504)
T ss_pred eCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC---ccCcccccccccccCCCceEeeccCC
Confidence 899999999999999999999999999999999987653 22222223333 4456666666553
No 18
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.91 E-value=5.1e-25 Score=162.49 Aligned_cols=104 Identities=41% Similarity=0.879 Sum_probs=84.9
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-------------------------------------------e
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-------------------------------------------R 37 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-------------------------------------------~ 37 (108)
|||+|++|++|+++..++|.+.+|++++|+.||||| .
T Consensus 360 avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~ 439 (514)
T PLN03112 360 CVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFK 439 (514)
T ss_pred HHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcc
Confidence 589999999999998678999999999999999999 2
Q ss_pred eeeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceE--EecCceEEEEEEe
Q 045518 38 LLPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLI--TLRAKHLLAIASY 104 (108)
Q Consensus 38 ~~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~ 104 (108)
|+|||.|+|.|+|++||++|++++++.++++|++++.++...++++....+++. .++++.+++++|.
T Consensus 440 ~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 508 (514)
T PLN03112 440 ILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRL 508 (514)
T ss_pred eeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCC
Confidence 799999999999999999999999999999999998755322334443343443 3456677776663
No 19
>PLN02655 ent-kaurene oxidase
Probab=99.91 E-value=4.5e-25 Score=161.31 Aligned_cols=102 Identities=35% Similarity=0.542 Sum_probs=82.0
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC--------------------------------------eeeeec
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS--------------------------------------RLLPFG 42 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt--------------------------------------~~~pFg 42 (108)
||++|+||++|+++...+|.+.+|++++||.||||| .++|||
T Consensus 325 a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~~~~~Fg 404 (466)
T PLN02655 325 AVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFG 404 (466)
T ss_pred HHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcccCCcccccCCC
Confidence 589999999999998778999999999999999999 478999
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEe
Q 045518 43 SGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASY 104 (108)
Q Consensus 43 ~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 104 (108)
.|+|.|+|++||.+|++++++.|+++|++++.++.. ...+ .....+.+..++.+++.+|.
T Consensus 405 ~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~r~ 464 (466)
T PLN02655 405 AGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE-EKED-TVQLTTQKLHPLHAHLKPRG 464 (466)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc-cccc-hhheeEeecCCcEEEEeecC
Confidence 999999999999999999999999999999876531 1111 11222334456666665554
No 20
>PLN02738 carotene beta-ring hydroxylase
Probab=99.91 E-value=7.1e-25 Score=165.56 Aligned_cols=102 Identities=29% Similarity=0.455 Sum_probs=84.9
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-----------------------------------------eee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-----------------------------------------RLL 39 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-----------------------------------------~~~ 39 (108)
|||+|+||+||+++.. +|.+.+|++++||.||+|| .|+
T Consensus 454 AVIkEtLRL~p~~p~~-~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~v 532 (633)
T PLN02738 454 RVINESLRLYPQPPVL-IRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYL 532 (633)
T ss_pred HHHHHHHhcCCCcccc-ceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCcee
Confidence 6899999999999985 5999999999999999999 379
Q ss_pred eecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEec
Q 045518 40 PFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYC 105 (108)
Q Consensus 40 pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 105 (108)
|||.|+|+|+|++||++|++++++.|+++|+|++.++. .+........+.++.+.++++++|.+
T Consensus 533 pFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~--~~~~~~~~~~~~p~~~l~v~l~~R~~ 596 (633)
T PLN02738 533 PFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGA--PPVKMTTGATIHTTEGLKMTVTRRTK 596 (633)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCC--CCcccccceEEeeCCCcEEEEEECCC
Confidence 99999999999999999999999999999999987663 22333333344456777888877754
No 21
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.91 E-value=5.2e-25 Score=160.38 Aligned_cols=96 Identities=26% Similarity=0.426 Sum_probs=79.7
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-----------------------------------eeeeecCCC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-----------------------------------RLLPFGSGR 45 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-----------------------------------~~~pFg~G~ 45 (108)
|||+|++|+||+++. ++|.+.+|++++||.||||+ .|+|||.|+
T Consensus 319 avi~E~lRl~p~~~~-~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~pFG~G~ 397 (452)
T PLN03141 319 NVITETLRMGNIING-VMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDMNNSSFTPFGGGQ 397 (452)
T ss_pred HHHHHHHhccCCcCC-cceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCCCCCCCCCCCCCC
Confidence 689999999999986 57999999999999999999 579999999
Q ss_pred CCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEE
Q 045518 46 RVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIAS 103 (108)
Q Consensus 46 r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 103 (108)
|.|+|++||.+|++++++.|+++|+|++.++. .. ....+.+..+..+++.+|
T Consensus 398 R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~ 449 (452)
T PLN03141 398 RLCPGLDLARLEASIFLHHLVTRFRWVAEEDT---IV---NFPTVRMKRKLPIWVTRI 449 (452)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCeeecCCCC---ee---ecccccCCCCceEEEEeC
Confidence 99999999999999999999999999986542 11 112334455666666665
No 22
>PLN02500 cytochrome P450 90B1
Probab=99.91 E-value=6.9e-25 Score=161.07 Aligned_cols=96 Identities=27% Similarity=0.455 Sum_probs=78.7
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC--------------------------------------------
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-------------------------------------------- 36 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-------------------------------------------- 36 (108)
|||+|+||+||+++.. +|.+.+|++++||.|||||
T Consensus 348 avikEtlRl~P~~~~~-~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~ 426 (490)
T PLN02500 348 CVINETLRLGNVVRFL-HRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATT 426 (490)
T ss_pred HHHHHHHhcCCCccCe-eeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCC
Confidence 6899999999999984 7999999999999999999
Q ss_pred -eeeeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEE
Q 045518 37 -RLLPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIA 102 (108)
Q Consensus 37 -~~~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (108)
.|+|||.|+|+|+|++||.+|++++++.++++|+|++.++.. .... . ....+.+.++++.+
T Consensus 427 ~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~--~~~~-~--~~~~~~~l~~~~~~ 488 (490)
T PLN02500 427 NNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ--AFAF-P--FVDFPKGLPIRVRR 488 (490)
T ss_pred CCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc--ceec-c--cccCCCCceEEEEe
Confidence 168999999999999999999999999999999999876542 1111 1 22334566666543
No 23
>PLN02936 epsilon-ring hydroxylase
Probab=99.91 E-value=1.7e-24 Score=159.17 Aligned_cols=102 Identities=26% Similarity=0.446 Sum_probs=84.6
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-----------------------------------------eee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-----------------------------------------RLL 39 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-----------------------------------------~~~ 39 (108)
|||+|+||++|+++...+|.+.+|+.++||.||+|+ .++
T Consensus 341 avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~ 420 (489)
T PLN02936 341 RCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYI 420 (489)
T ss_pred HHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCccee
Confidence 689999999999998877777788888999999999 378
Q ss_pred eecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEec
Q 045518 40 PFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYC 105 (108)
Q Consensus 40 pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 105 (108)
|||.|+|.|+|++||++|++++++.|+++|+++++++. +......+.+.++.++.+++++|.+
T Consensus 421 pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~R~~ 483 (489)
T PLN02936 421 PFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQ---DIVMTTGATIHTTNGLYMTVSRRRV 483 (489)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC---ccceecceEEeeCCCeEEEEEeeeC
Confidence 99999999999999999999999999999999987653 2222222333456778888888766
No 24
>PLN03018 homomethionine N-hydroxylase
Probab=99.91 E-value=2.2e-24 Score=160.33 Aligned_cols=101 Identities=29% Similarity=0.580 Sum_probs=82.6
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC--------------------------------------------
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-------------------------------------------- 36 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-------------------------------------------- 36 (108)
|||+|+||++|+++...+|.+.+|++++||.||||+
T Consensus 378 a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~ 457 (534)
T PLN03018 378 ACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEM 457 (534)
T ss_pred HHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCC
Confidence 579999999999998767999999999999999999
Q ss_pred eeeeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceec-eEEecCceEEEEEE
Q 045518 37 RLLPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFG-LITLRAKHLLAIAS 103 (108)
Q Consensus 37 ~~~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r 103 (108)
.++|||.|+|.|+|++||.+|+++++++++++|+|++.++. ..++.....+ +..+.++.+++++|
T Consensus 458 ~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~p~~~~v~~~~R 523 (534)
T PLN03018 458 RFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDF--GPLSLEEDDASLLMAKPLLLSVEPR 523 (534)
T ss_pred CccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCC--CCCCccccccceecCCCeEEEEEec
Confidence 15799999999999999999999999999999999987652 1233322222 33456677777776
No 25
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.90 E-value=2e-24 Score=159.43 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=83.0
Q ss_pred CeEeeecccCCCcccccceeeccceEE-cCEEeCCCC----------------------------------------eee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIV-NGFHIPKKS----------------------------------------RLL 39 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~-~g~~ip~gt----------------------------------------~~~ 39 (108)
|||+|+||++|+++.. .|.+.+|.++ +|+.||+|| .++
T Consensus 358 avi~EtLRl~p~v~~~-~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~ 436 (502)
T PLN02426 358 AALYESMRLFPPVQFD-SKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYP 436 (502)
T ss_pred HHHHHHHhCCCCCCCc-ceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccC
Confidence 6899999999999986 5999988887 999999999 367
Q ss_pred eecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEec
Q 045518 40 PFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYC 105 (108)
Q Consensus 40 pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 105 (108)
|||.|+|.|+|+++|.+|++++++.++++|++++.++.. ..+.......+.+..+..+++++|.+
T Consensus 437 pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~gl~v~~~~r~~ 501 (502)
T PLN02426 437 VFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSN-RAPRFAPGLTATVRGGLPVRVRERVR 501 (502)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCC-CCCcccceeEEecCCCEEEEEEEccC
Confidence 999999999999999999999999999999999865421 12233333344556677777776643
No 26
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.90 E-value=1.6e-24 Score=159.98 Aligned_cols=99 Identities=25% Similarity=0.401 Sum_probs=77.3
Q ss_pred CeEeeecccCCCcccccceeeccceEE-cCEEeCCCC----------------------------------------eee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIV-NGFHIPKKS----------------------------------------RLL 39 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~-~g~~ip~gt----------------------------------------~~~ 39 (108)
|||+|+||++|+++.. +|.+.+|..+ +|+.||||| .|+
T Consensus 376 Avi~EtLRl~p~~p~~-~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~ 454 (516)
T PLN03195 376 AVITETLRLYPAVPQD-PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFT 454 (516)
T ss_pred HHHHHHhhcCCCCcch-hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEe
Confidence 6899999999999986 4667676665 999999999 379
Q ss_pred eecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEE
Q 045518 40 PFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIAS 103 (108)
Q Consensus 40 pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 103 (108)
|||.|+|+|+|++||++|++++++.++++|++++.++. +........+.+..+..+++++|
T Consensus 455 pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~r 515 (516)
T PLN03195 455 AFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH---PVKYRMMTILSMANGLKVTVSRR 515 (516)
T ss_pred ccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC---cceeeeeeEEecCCCEEEEEEeC
Confidence 99999999999999999999999999999999987542 22222222233455566666544
No 27
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.90 E-value=3e-24 Score=157.15 Aligned_cols=99 Identities=26% Similarity=0.308 Sum_probs=80.8
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-----------------------------------eeeeecCCC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-----------------------------------RLLPFGSGR 45 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-----------------------------------~~~pFg~G~ 45 (108)
|||+|+||++|+++.. +|.+.+|++++||.||+|+ .++|||.|+
T Consensus 355 a~i~E~lRl~p~~~~~-~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~~~~~~~~pFG~G~ 433 (490)
T PLN02302 355 QVIDETLRLINISLTV-FREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTPKAGTFLPFGLGS 433 (490)
T ss_pred HHHHHHHHhCCCcccc-hhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCCCCCCCccCCCCCC
Confidence 5789999999999984 6999999999999999999 478999999
Q ss_pred CCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEe
Q 045518 46 RVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASY 104 (108)
Q Consensus 46 r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 104 (108)
|.|+|+++|.+|++++++.++++|++++.++. .++. ....+.+..+.++++++|.
T Consensus 434 r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~--~~~~~~p~~~~~~~~~~~~ 488 (490)
T PLN02302 434 RLCPGNDLAKLEISIFLHHFLLGYRLERLNPG--CKVM--YLPHPRPKDNCLARITKVA 488 (490)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCC--Ccce--eCCCCCCCCCceEEEEecc
Confidence 99999999999999999999999999987542 1222 1222345556666666553
No 28
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.90 E-value=3.8e-24 Score=156.42 Aligned_cols=97 Identities=25% Similarity=0.402 Sum_probs=80.5
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC----------------------------------eeeeecCCCC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS----------------------------------RLLPFGSGRR 46 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt----------------------------------~~~pFg~G~r 46 (108)
|||+|+||++|+++.. .|.+.+|++++||.||||+ .++|||.|+|
T Consensus 331 avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~~~~~~lpFG~G~r 409 (463)
T PLN02196 331 RVIQETLRVASILSFT-FREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAPKPNTFMPFGNGTH 409 (463)
T ss_pred HHHHHHHhcCCCcccc-ceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCCCCCcccCcCCCCC
Confidence 5789999999999986 5999999999999999999 5899999999
Q ss_pred CCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEE
Q 045518 47 VCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIA 102 (108)
Q Consensus 47 ~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (108)
.|+|+++|++|++++++.|+++|+|++.+++. . ........+.++.+++++.
T Consensus 410 ~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~--~--~~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 410 SCPGNELAKLEISVLIHHLTTKYRWSIVGTSN--G--IQYGPFALPQNGLPIALSR 461 (463)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC--c--eEEcccccCCCCceEEEec
Confidence 99999999999999999999999999876531 2 2222223456666777654
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.89 E-value=9.6e-24 Score=154.88 Aligned_cols=97 Identities=30% Similarity=0.407 Sum_probs=80.4
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC--------------------------------------eeeeec
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS--------------------------------------RLLPFG 42 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt--------------------------------------~~~pFg 42 (108)
||++|+||++|+++. ++|.+.+|++++||.||+|+ .++|||
T Consensus 334 a~i~EtLRl~p~~~~-~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~l~FG 412 (472)
T PLN02987 334 CVVNETLRVANIIGG-IFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFG 412 (472)
T ss_pred HHHHHHHHccCCcCC-ccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcceECCC
Confidence 578999999999986 57999999999999999999 378999
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEE
Q 045518 43 SGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIAS 103 (108)
Q Consensus 43 ~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 103 (108)
.|+|.|+|++||.+|++++++.|+++|++++.++. +... ...+.+..+..+++++|
T Consensus 413 ~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~--~~~~~p~~~~~~~~~~r 468 (472)
T PLN02987 413 GGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD---KLVF--FPTTRTQKRYPINVKRR 468 (472)
T ss_pred CCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC---ceee--cccccCCCCceEEEEec
Confidence 99999999999999999999999999999987653 2222 22334455667766665
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=2.3e-22 Score=144.55 Aligned_cols=100 Identities=34% Similarity=0.497 Sum_probs=83.6
Q ss_pred eEeeecccCCCcccccceeeccceEEcC----EEeCCCC-----------------------------------------
Q 045518 2 VVKETLRLYPIAPLLIPHESTEDCIVNG----FHIPKKS----------------------------------------- 36 (108)
Q Consensus 2 ~i~E~lRl~p~~~~~~~r~~~~d~~~~g----~~ip~gt----------------------------------------- 36 (108)
||+|||||+||.++.+ |.+.+|.++.+ |.||+|.
T Consensus 339 ~IkEtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl 417 (486)
T KOG0684|consen 339 CIKETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKL 417 (486)
T ss_pred HHHHHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccc
Confidence 7899999999999864 99999999966 9999999
Q ss_pred --eeeeecCCCCCCCChhhhHHHHHHHHHHHhhhceEEccCCCCCcccCccceeceEEecCceEEEEEEecc
Q 045518 37 --RLLPFGSGRRVCPGMQLGLTIVKQVIAQLVHCFEWELPRGMLPIELDMTEEFGLITLRAKHLLAIASYCL 106 (108)
Q Consensus 37 --~~~pFg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~ 106 (108)
.+||||+|.+.|||+.||.+|++.++..+|++||+++.++ ..+.+++... ...+..+++|+-+.|.
T Consensus 418 ~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~-~~P~~d~s~~---v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 418 DYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG-PFPEVDYSRM---VMQPEGDVRIRYKRRP 485 (486)
T ss_pred cccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC-CCCCCCHHHh---hcCCCCCceEEEeecC
Confidence 4699999999999999999999999999999999999986 2344554433 4556666777766664
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=7.1e-22 Score=142.98 Aligned_cols=75 Identities=40% Similarity=0.629 Sum_probs=70.6
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC-----------------------------eeeeecCCCCCCCCh
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS-----------------------------RLLPFGSGRRVCPGM 51 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt-----------------------------~~~pFg~G~r~C~G~ 51 (108)
|+++|+||++|+++. +.|.+.+|++++|+.||+|+ .++|||+|+|.|+|.
T Consensus 284 ~~v~E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~~~~l~FG~G~H~ClG~ 362 (411)
T COG2124 284 AVVEETLRLYPPVPL-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFNNAHLPFGGGPHRCLGA 362 (411)
T ss_pred HHHHHHHHhCCchhc-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCCCCCcCCCCCCccccCH
Confidence 478999999999999 78999999999999999999 689999999999999
Q ss_pred hhhHHHHHHHHHHHhhhceEEccCC
Q 045518 52 QLGLTIVKQVIAQLVHCFEWELPRG 76 (108)
Q Consensus 52 ~~A~~~~~~~l~~ll~~f~~~~~~~ 76 (108)
+||++|++++++.++++|++....+
T Consensus 363 ~lA~~E~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 363 ALARLELKVALAELLRRFPLLLLAE 387 (411)
T ss_pred HHHHHHHHHHHHHHHHhCchhhcCC
Confidence 9999999999999999999887654
No 32
>PLN02648 allene oxide synthase
Probab=99.74 E-value=1.3e-18 Score=128.29 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=66.0
Q ss_pred CeEeeecccCCCcccccceeeccceEEc----CEEeCCCC------------------------------------eeee
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVN----GFHIPKKS------------------------------------RLLP 40 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~----g~~ip~gt------------------------------------~~~p 40 (108)
|||+|+||++|+++.. .|.+.+|++++ ||.||||+ .+++
T Consensus 338 avi~EtLRl~p~v~~~-~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~~~~~~~ 416 (480)
T PLN02648 338 SVVYEALRIEPPVPFQ-YGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVF 416 (480)
T ss_pred HHHHHHHhhcCCcccc-cceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccccccccc
Confidence 5789999999999986 48899999996 79999999 2344
Q ss_pred e---------cCCCCCCCChhhhHHHHHHHHHHHhhhce-EEccCCC
Q 045518 41 F---------GSGRRVCPGMQLGLTIVKQVIAQLVHCFE-WELPRGM 77 (108)
Q Consensus 41 F---------g~G~r~C~G~~~A~~~~~~~l~~ll~~f~-~~~~~~~ 77 (108)
| |.|+|.|+|++||++|++++++.|+++|+ |++.++.
T Consensus 417 f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 417 WSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred cCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence 5 56679999999999999999999999998 9987664
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=88.51 E-value=0.48 Score=31.73 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=24.9
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS 36 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt 36 (108)
|||+|+.-...-... .=...+|+.++|..|||||
T Consensus 57 A~V~~~qtv~~Gs~v--rlRLle~i~i~g~~IPkgt 90 (200)
T PF12508_consen 57 AVVDGTQTVVDGSRV--RLRLLEDIQIGGILIPKGT 90 (200)
T ss_pred EEEecceEEeCCCEE--EEEEcCceEECCEEeCCCC
Confidence 678888766554332 1246789999999999999
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=70.67 E-value=4.2 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=16.4
Q ss_pred CCCChhhhHHHHHHHHHHHhhh
Q 045518 47 VCPGMQLGLTIVKQVIAQLVHC 68 (108)
Q Consensus 47 ~C~G~~~A~~~~~~~l~~ll~~ 68 (108)
+|.|+.||..++-.++.+++..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999865
No 35
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=69.73 E-value=4.1 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=24.1
Q ss_pred CeEeeecccCCCcccccceeeccceEEcCEEeCCCC
Q 045518 1 MVVKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKS 36 (108)
Q Consensus 1 a~i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt 36 (108)
|||+|+.-+.-... +.=...+|+.++|..||+||
T Consensus 260 A~V~~~qtv~~G~~--vrlRLle~~~v~~~~ipkgt 293 (410)
T TIGR03779 260 ACVHETQTVVDGSA--VKLRLLEPIQAGDLVIPKGT 293 (410)
T ss_pred EEEcCceEEecCCE--EEEEEcCceeeCCEEecCCC
Confidence 57777776654322 21245789999999999999
No 36
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=55.01 E-value=8.7 Score=22.17 Aligned_cols=20 Identities=15% Similarity=0.634 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhceEEccC
Q 045518 56 TIVKQVIAQLVHCFEWELPR 75 (108)
Q Consensus 56 ~~~~~~l~~ll~~f~~~~~~ 75 (108)
..|+-++.++|+-|||.+++
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 45778899999999999875
No 37
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=53.96 E-value=5.5 Score=21.04 Aligned_cols=10 Identities=50% Similarity=1.129 Sum_probs=8.5
Q ss_pred eecCCCCCCC
Q 045518 40 PFGSGRRVCP 49 (108)
Q Consensus 40 pFg~G~r~C~ 49 (108)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999984
No 38
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=52.43 E-value=14 Score=28.38 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=49.0
Q ss_pred EeeecccCCCcccccceeeccceEEcCEEeCCCCeeeeecCCCCCC---CChhhhHHHHHHHHHHHhhhceE
Q 045518 3 VKETLRLYPIAPLLIPHESTEDCIVNGFHIPKKSRLLPFGSGRRVC---PGMQLGLTIVKQVIAQLVHCFEW 71 (108)
Q Consensus 3 i~E~lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~~~pFg~G~r~C---~G~~~A~~~~~~~l~~ll~~f~~ 71 (108)
++|.++.-|.......|-..+|++++|..+ .|-|+++.++.| -|++.+..+-+-=+++|.+.++.
T Consensus 106 v~~~l~~aps~ftl~aRnp~r~v~igG~~v----~f~~~~gap~v~Dl~~grr~gtl~D~~n~~kLa~~~~~ 173 (526)
T COG5598 106 VREALKSAPSSFTLHARNPKRDVQIGGNNV----HFGPAYGAPNVRDLDKGRRYGTLEDYRNLAKLAQHAPN 173 (526)
T ss_pred HHHHHHhCchhheeccCCcccceeecCcee----EEEecCCCceeeeccCCcccchHHHHHHHHHHHhhcch
Confidence 456666656555555566677888877544 788888888888 48899999999999999999974
No 39
>PRK06186 hypothetical protein; Validated
Probab=49.94 E-value=12 Score=25.64 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=22.1
Q ss_pred cCEEeCCCC-----------------eeeeecCCCCCCCChhhhHHHH
Q 045518 28 NGFHIPKKS-----------------RLLPFGSGRRVCPGMQLGLTIV 58 (108)
Q Consensus 28 ~g~~ip~gt-----------------~~~pFg~G~r~C~G~~~A~~~~ 58 (108)
+|..||.|- +-+||=+ .|.|+++|..|.
T Consensus 55 dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LG---IClGmQ~avIe~ 99 (229)
T PRK06186 55 DGIWCVPGSPYRNDDGALTAIRFARENGIPFLG---TCGGFQHALLEY 99 (229)
T ss_pred CeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEe---echhhHHHHHHH
Confidence 788999887 5567655 799999888774
No 40
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=37.32 E-value=30 Score=22.04 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=14.2
Q ss_pred eccceEEcCEEeCCCC
Q 045518 21 STEDCIVNGFHIPKKS 36 (108)
Q Consensus 21 ~~~d~~~~g~~ip~gt 36 (108)
..+|+.++|..||+|+
T Consensus 52 f~~dv~igGk~l~AG~ 67 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGT 67 (145)
T ss_pred ECCCeEECCEEcCCee
Confidence 3578999999999999
No 41
>PF01705 CX: CX module; InterPro: IPR002619 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=34.11 E-value=58 Score=17.33 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=24.2
Q ss_pred eeccceEEcCEEeCCCC--eeeeec-CCCCCCCCh
Q 045518 20 ESTEDCIVNGFHIPKKS--RLLPFG-SGRRVCPGM 51 (108)
Q Consensus 20 ~~~~d~~~~g~~ip~gt--~~~pFg-~G~r~C~G~ 51 (108)
....|-++.+...+-|| ..+-|| .+.-.|-|.
T Consensus 21 i~~~d~el~~v~F~nGt~p~si~fgC~~~~~CcG~ 55 (61)
T PF01705_consen 21 ISEDDWELGNVTFPNGTRPKSIFFGCPSYESCCGM 55 (61)
T ss_pred CCCCCccccceEccCCCcceeEEEeCCCCCceeCC
Confidence 34567889999999999 778888 445667664
No 42
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=33.26 E-value=18 Score=23.20 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=8.6
Q ss_pred CCCCCChhhh
Q 045518 45 RRVCPGMQLG 54 (108)
Q Consensus 45 ~r~C~G~~~A 54 (108)
||.|+|+|+=
T Consensus 128 PRs~LgMHML 137 (150)
T PF15442_consen 128 PRSCLGMHML 137 (150)
T ss_pred cccccchHHH
Confidence 8999999853
No 43
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=28.12 E-value=35 Score=26.31 Aligned_cols=30 Identities=33% Similarity=0.626 Sum_probs=23.8
Q ss_pred EcCEEeCCCC-----------------eeeeecCCCCCCCChhhhHHHHH
Q 045518 27 VNGFHIPKKS-----------------RLLPFGSGRRVCPGMQLGLTIVK 59 (108)
Q Consensus 27 ~~g~~ip~gt-----------------~~~pFg~G~r~C~G~~~A~~~~~ 59 (108)
++|..||.|- +-+||=+ .|+|+++|..|..
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lG---IClGmQ~aviE~A 390 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLG---ICLGMQLAVIEFA 390 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEE---EchhHHHHHHHHH
Confidence 6889999887 5577754 7999999988853
No 44
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=27.59 E-value=48 Score=25.44 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=16.3
Q ss_pred eeeeecCCCCCCCChhhhHHHHHHH
Q 045518 37 RLLPFGSGRRVCPGMQLGLTIVKQV 61 (108)
Q Consensus 37 ~~~pFg~G~r~C~G~~~A~~~~~~~ 61 (108)
+-+||-+ .|+|+++|..|..=-
T Consensus 391 n~iP~LG---iCLGmQ~AvIEfaRn 412 (585)
T KOG2387|consen 391 NKIPFLG---ICLGMQLAVIEFARN 412 (585)
T ss_pred cCCCeEe---eehhhhHHHHHHHHH
Confidence 4567754 799999999886433
No 45
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=26.16 E-value=41 Score=24.56 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=33.1
Q ss_pred eeecccCCCc---ccccceeeccceEEc----CEEeCCCCe-ee---eec---CCCCCCCChhhhHHHHHHHH
Q 045518 4 KETLRLYPIA---PLLIPHESTEDCIVN----GFHIPKKSR-LL---PFG---SGRRVCPGMQLGLTIVKQVI 62 (108)
Q Consensus 4 ~E~lRl~p~~---~~~~~r~~~~d~~~~----g~~ip~gt~-~~---pFg---~G~r~C~G~~~A~~~~~~~l 62 (108)
+.+..+.||. |+.+.-.++.|..+- .-.|..||+ ++ |++ .|.-+-.|+++|. |++.++
T Consensus 280 ~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTNv~~~GspYs~l~~~~pms~GrRIA~-EIk~A~ 351 (361)
T COG1759 280 EATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTNVYMGGSPYSNLYWGEPMSTGRRIAR-EIKEAI 351 (361)
T ss_pred HHHHHhcCCCcccceeeeeeecCCccEEEEEEeccccCCcccccCCCcchhhhcCCCcchhhHHHH-HHHHHH
Confidence 3455667753 555545556664331 235667773 22 111 3455788999998 777664
No 46
>PHA03162 hypothetical protein; Provisional
Probab=25.04 E-value=88 Score=19.67 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=17.8
Q ss_pred cCCCCCCCChhhhHHHHHHHHHHH
Q 045518 42 GSGRRVCPGMQLGLTIVKQVIAQL 65 (108)
Q Consensus 42 g~G~r~C~G~~~A~~~~~~~l~~l 65 (108)
+.|.+.||++...+-|+-.=++.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999998887765555543
No 47
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=24.42 E-value=31 Score=18.16 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=9.7
Q ss_pred eecCCCCCCC--Chh
Q 045518 40 PFGSGRRVCP--GMQ 52 (108)
Q Consensus 40 pFg~G~r~C~--G~~ 52 (108)
-||-|.|.|. |+.
T Consensus 11 ~yGkGsr~C~vCg~~ 25 (54)
T PTZ00218 11 TYGKGSRQCRVCSNR 25 (54)
T ss_pred cCCCCCCeeecCCCc
Confidence 3899999986 553
No 48
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=22.89 E-value=44 Score=20.64 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.3
Q ss_pred eeccceEEcCEEeCCCC
Q 045518 20 ESTEDCIVNGFHIPKKS 36 (108)
Q Consensus 20 ~~~~d~~~~g~~ip~gt 36 (108)
.+.+|.+++|-.||+|+
T Consensus 72 I~~~d~~~~g~~i~~Gt 88 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGT 88 (122)
T ss_pred ecCCCcccCCeeecceE
Confidence 34668899999999999
No 49
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=22.83 E-value=54 Score=20.03 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=16.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHhh
Q 045518 45 RRVCPGMQLGLTIVKQVIAQLVH 67 (108)
Q Consensus 45 ~r~C~G~~~A~~~~~~~l~~ll~ 67 (108)
.|.|+|..++......++..|-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 37899999999988888877644
No 50
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=22.10 E-value=75 Score=18.08 Aligned_cols=28 Identities=11% Similarity=-0.011 Sum_probs=19.7
Q ss_pred eeecccCCCcccccceeeccceEEcCEE
Q 045518 4 KETLRLYPIAPLLIPHESTEDCIVNGFH 31 (108)
Q Consensus 4 ~E~lRl~p~~~~~~~r~~~~d~~~~g~~ 31 (108)
.|.+.+.+...+.-.|..+.+++++|..
T Consensus 16 ~e~~~l~~~GV~~ngrlV~T~F~fDG~~ 43 (79)
T PF11012_consen 16 AEEFTLNESGVFRNGRLVATSFEFDGKT 43 (79)
T ss_pred ccEEEECCCcEEECCCEEeeEEEECCCE
Confidence 3677777766655567788888888843
Done!