AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>045520
MEWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYIS
LPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDEN
VSALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVV
MNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQ
ENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFLR
SENGL

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with COILIN COILIN COILIN coilin	protein from Arabidopsis thaliana	8.7e-50
BLAST match view associations BLAST with COIL COIL COIL Uncharacterized protein	protein from Sus scrofa	0.00032
BLAST match view associations BLAST with COIL COIL COIL Uncharacterized protein	protein from Bos taurus	0.00041
BLAST match view associations BLAST with COIL COIL COIL Uncharacterized protein	protein from Canis lupus familiaris	0.00054

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045520
        (305 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2031810 - symbol:COILIN "coilin" species:3702 ...   379  8.7e-50   2
UNIPROTKB|F1RSD6 - symbol:COIL "Uncharacterized protein" ...   119  0.00032   1
UNIPROTKB|F1MEL4 - symbol:COIL "Uncharacterized protein" ...   118  0.00041   1
UNIPROTKB|E2RKJ9 - symbol:COIL "Uncharacterized protein" ...   117  0.00054   1


>TAIR|locus:2031810 [details] [associations]
            symbol:COILIN "coilin" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0006333 "chromatin assembly
            or disassembly" evidence=RCA] [GO:0006346 "methylation-dependent
            chromatin silencing" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0016570
            "histone modification" evidence=RCA] [GO:0031048 "chromatin
            silencing by small RNA" evidence=RCA] [GO:0048449 "floral organ
            formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
            evidence=RCA] [GO:0030619 "U1 snRNA binding" evidence=IDA]
            [GO:0030620 "U2 snRNA binding" evidence=IDA] EMBL:CP002684
            GenomeReviews:CT485782_GR eggNOG:NOG84544 KO:K13150
            InterPro:IPR024822 PANTHER:PTHR15197 EMBL:AY093028 EMBL:AY128933
            IPI:IPI00548987 RefSeq:NP_172762.2 UniGene:At.11249 IntAct:Q8RWK8
            PaxDb:Q8RWK8 PRIDE:Q8RWK8 EnsemblPlants:AT1G13030.1 GeneID:837860
            KEGG:ath:AT1G13030 TAIR:At1g13030 HOGENOM:HOG000090816
            InParanoid:Q8RWK8 OMA:FRVGKIS PhylomeDB:Q8RWK8
            ProtClustDB:CLSN2915088 ArrayExpress:Q8RWK8 Genevestigator:Q8RWK8
            Uniprot:Q8RWK8
        Length = 608

 Score = 379 (138.5 bits), Expect = 8.7e-50, Sum P(2) = 8.7e-50
 Identities = 80/150 (53%), Positives = 105/150 (70%)

Query:     3 WNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLP 62
             WNG  +KKKGQKWG +K+ FSK+   ++F++ +     E E      +++E+L  Y    
Sbjct:   362 WNGNMTKKKGQKWGTEKSGFSKRYA-QDFNEDATTQPAEAETLANCPIDYEQLVAYTGSV 420

Query:    63 KEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVS 122
             K+GDVIAYRLIELTSSWTPE SSFRVGKIS+YD D+  + L PV E+P+  EKKT+E+  
Sbjct:   421 KKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFPI--EKKTEEDDD 478

Query:   123 -ALQSET-LYGEDGSLRIDFSLLLDVRIIK 150
               +Q +T LY EDGSL I+FS LLDVR +K
Sbjct:   479 FCMQPDTSLYKEDGSLEIEFSALLDVRSVK 508

 Score = 165 (63.1 bits), Expect = 8.7e-50, Sum P(2) = 8.7e-50
 Identities = 42/85 (49%), Positives = 59/85 (69%)

Query:   219 DQDAVSNVRDNSNKE-KSPAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQS 277
             DQ A    + ++NKE ++PA  +ENG+++ WEE++ ALSAKKA LS  ++   K+ S  S
Sbjct:   526 DQSA-KKPKLSANKELQTPA--KENGEVSPWEELSEALSAKKAALSQANNGWNKKGS--S 580

Query:   278 SGHRLSYKALRSSALGPTMAFLRSE 302
             SG   SYKALR SA+GP M +LRS+
Sbjct:   581 SGGSWSYKALRGSAMGPVMNYLRSQ 605

 Score = 43 (20.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query:     9 KKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEK 54
             KK  ++W R+K    K+ + +   Q    PS +  I+I      EK
Sbjct:   264 KKAKRQWLREKTKLEKEELLQT--QLVVAPSQKPVITIDHQATKEK 307


>UNIPROTKB|F1RSD6 [details] [associations]
            symbol:COIL "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0042802 "identical protein binding" evidence=IEA]
            [GO:0015036 "disulfide oxidoreductase activity" evidence=IEA]
            [GO:0015030 "Cajal body" evidence=IEA] [GO:0008022 "protein
            C-terminus binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0001674 "female germ cell nucleus" evidence=IEA]
            GO:GO:0005730 GO:GO:0015030 GO:GO:0015036 OMA:CRVVTDL GO:GO:0001674
            InterPro:IPR024822 PANTHER:PTHR15197 GeneTree:ENSGT00390000004832
            EMBL:FP245413 Ensembl:ENSSSCT00000019175 Uniprot:F1RSD6
        Length = 571

 Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
 Identities = 42/163 (25%), Positives = 79/163 (48%)

Query:     1 MEWNGITSK-KKGQKWGRDKAA---FSKKSIYENFDQFSEMPSFEKEISIGKDMEFEK-- 54
             + W G   +  +G+  GR  A     ++ + Y+   Q +EM +    I I   +E  K  
Sbjct:   397 LSWKGARGRGMRGRGRGRGPAGPCVLNRNAEYQKQQQLNEMVTNSSTI-IQNPVETRKRD 455

Query:    55 ---LPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI---LLAPVP- 107
                LP   + P+ GD IA++L+ELTS + P+ S ++ GKI  ++ +T ++   +L+ +P 
Sbjct:   456 YSLLPLLAAAPQVGDKIAFKLLELTSDYFPDISDYKEGKILSHNPETQQVDIEILSSLPA 515

Query:   108 -EYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRII 149
              + P  F+        A   E    ++  + + +  L+D R+I
Sbjct:   516 MKEPGKFDLVYHNENGAEVVEYAVTQEKRITVFWRELIDPRLI 558


>UNIPROTKB|F1MEL4 [details] [associations]
            symbol:COIL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0042802 "identical protein binding" evidence=IEA]
            [GO:0015036 "disulfide oxidoreductase activity" evidence=IEA]
            [GO:0015030 "Cajal body" evidence=IEA] [GO:0008022 "protein
            C-terminus binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0001674 "female germ cell nucleus" evidence=IEA]
            GO:GO:0005730 GO:GO:0015030 GO:GO:0015036 OMA:CRVVTDL GO:GO:0001674
            InterPro:IPR024822 PANTHER:PTHR15197 GeneTree:ENSGT00390000004832
            EMBL:DAAA02048263 EMBL:DAAA02048264 EMBL:DAAA02048265
            IPI:IPI00697370 UniGene:Bt.38955 Ensembl:ENSBTAT00000022956
            Uniprot:F1MEL4
        Length = 571

 Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
 Identities = 40/163 (24%), Positives = 82/163 (50%)

Query:     1 MEWNGITSK-KKGQKWGRDKAA---FSKKSIYENFDQFSEMPSFEKEISIGKDMEFEK-- 54
             + W G   +  +G+  GR  A     ++ + Y+   Q +EM +    I I   +E +K  
Sbjct:   403 LSWKGARGRGMRGRGRGRGHAVPYVLNRNADYQKQQQLNEMVTNSSTI-IQNPIETQKKD 461

Query:    55 ---LPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI---LLAPVP- 107
                LP   + P+ G+ IA++L+ELTS+++P+ S ++ G+I  ++ +T ++   +L+ +P 
Sbjct:   462 YSLLPLLAAAPQVGEKIAFKLLELTSNYSPDVSDYKEGRILSHNPETQQVDIEILSSLPA 521

Query:   108 -EYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRII 149
              + P  F+        A   E    ++  + + +  L+D R+I
Sbjct:   522 MKEPGKFDLVYHNENGAEVVEYAVTQEKRITVLWRELIDPRLI 564


>UNIPROTKB|E2RKJ9 [details] [associations]
            symbol:COIL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0042802 "identical protein binding"
            evidence=IEA] [GO:0015036 "disulfide oxidoreductase activity"
            evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0008022
            "protein C-terminus binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0001674 "female germ cell nucleus" evidence=IEA]
            GO:GO:0005730 GO:GO:0015030 GO:GO:0015036 CTD:8161 KO:K13150
            OMA:CRVVTDL GO:GO:0001674 InterPro:IPR024822 PANTHER:PTHR15197
            GeneTree:ENSGT00390000004832 EMBL:AAEX03006558 EMBL:AAEX03006559
            RefSeq:XP_537686.2 Ensembl:ENSCAFT00000027568 GeneID:480564
            KEGG:cfa:480564 NextBio:20855565 Uniprot:E2RKJ9
        Length = 578

 Score = 117 (46.2 bits), Expect = 0.00054, P = 0.00054
 Identities = 42/164 (25%), Positives = 85/164 (51%)

Query:     1 MEWNGITSK-KKGQKWGRDKAA---FSKKSIYENFDQFSEMPSFEKEISIGKDMEFEK-- 54
             + W G   +  +G+  GR +A     ++ + Y+   Q +EM +    I I   +E  K  
Sbjct:   404 LSWKGARGRGMRGRGRGRGQAVSFLLNRNAEYQKNQQLNEMVTNTSTI-IQNPIETHKKD 462

Query:    55 ---LPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI---LLAPVP- 107
                LP   + P+ G+ IA++L+ELTS ++P+ S ++ GKI  ++ +T ++   +L+ +P 
Sbjct:   463 YSLLPLLAAAPQVGEKIAFKLLELTSDYSPDVSDYKEGKILSHNPETQQVDIEILSSLPA 522

Query:   108 -EYPLAFEKKT-DENVSALQSETLYGEDGSLRIDFSLLLDVRII 149
              + P  F+    +EN + +  E    ++  + + +  L+D R+I
Sbjct:   523 MKEPGKFDLVYHNENGTEVV-EYAVTQEKRITVFWRELIDPRLI 565


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      305       305   0.00098  115 3  11 23  0.48    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  216 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.37u 0.17s 29.54t   Elapsed:  00:00:01
  Total cpu time:  29.37u 0.17s 29.54t   Elapsed:  00:00:01
  Start:  Thu May  9 16:18:55 2013   End:  Thu May  9 16:18:56 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data