BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045520
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WLT|A Chain A, The Crystal Structure Of Helicobacter Pylori
           L-Asparaginase At 1.4 A Resolution
 pdb|2WT4|A Chain A, Room Temperature Crystal Structure Of Helicobacter Pylori
           L- Asparaginase At 1.8 A Resolution
          Length = 332

 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 242 NGKLNAWEEINLAL---SAKKAELSHVDDQ--SAKERSKQSSGHRLSYKALRSSALG 293
           +G LN +E +++A+   SA K  L  +DD   S +E  K  + H  ++KAL S A+G
Sbjct: 130 DGALNLYEAVSVAVNEKSANKGVLVVMDDTIFSVREVVKTHTTHVSTFKALNSGAIG 186


>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
          Length = 283

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 31/186 (16%)

Query: 122 SALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVH-------- 173
           S ++  T  GED  +    S+    + +K+ ++   + +GD++ +  F  +H        
Sbjct: 65  SVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAG 124

Query: 174 ---LGDQDVVMNFNVHVGDRDVVMNLRDDR--KHGKAHAPAQGNGEVRLGDQDAVSNVRD 228
              LGD + +M + VH+G         D R   H    + AQ  G V +GD   V  +  
Sbjct: 125 VTTLGDDNWIMAY-VHIG--------HDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSG 175

Query: 229 NSNKEKSPAHTQENGKLNAWEEIN--LALSAKKAELSHVDDQSAKER-------SKQSSG 279
                +  AH+   G     ++I   +  +  KAE   ++ +  + R       S   S 
Sbjct: 176 VHQYVRIGAHSMLGGASALVQDIPPFVIAAGNKAEPHGINVEGLRRRGFSPDAISALRSA 235

Query: 280 HRLSYK 285
           +R+ YK
Sbjct: 236 YRILYK 241


>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
           Of Mouse Fibronectin Containing The Rgd And Synergy
           Regions, 20 Structures
 pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
           Of Mouse Fibronectin Containing The Rgd And Synergy
           Regions, 10 Structures
          Length = 184

 Score = 27.3 bits (59), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 38  PSFEKEISIGKDMEFEKLPPYIS-------LPKEGDVIAYRLIELTSSWTPEPSSFRVGK 90
           P  E  +SI      E+ PP I        +P++ +VIA     L  SW P   S R  +
Sbjct: 64  PGTEYVVSIIAVNGREESPPLIGQQATVSDIPRDLEVIASTPTSLLISWEPPAVSVRYYR 123

Query: 91  ISWYDSDTNKILLAPVPEYPLAFEKKT 117
           I++ ++  N    +PV E+ +   K T
Sbjct: 124 ITYGETGGN----SPVQEFTVPGSKST 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,468,050
Number of Sequences: 62578
Number of extensions: 412252
Number of successful extensions: 713
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 5
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)