BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045520
         (305 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5SU73|COIL_MOUSE Coilin OS=Mus musculus GN=Coil PE=2 SV=1
          Length = 570

 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 35/51 (68%)

Query: 51  EFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI 101
           ++  LP   + P+ G+ IA++L+ELTS ++P+ S ++ GKI  +D +T ++
Sbjct: 457 DYSLLPLLAAAPQVGEKIAFKLLELTSDYSPDVSDYKEGKILSHDPETQQV 507


>sp|Q09003|COIL_XENLA Coilin OS=Xenopus laevis GN=coil PE=2 SV=2
          Length = 536

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 34/51 (66%)

Query: 51  EFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI 101
           ++  LP   + P+ G +IA++L+E++ ++TPE S ++ GKI  +D  T +I
Sbjct: 425 DYSSLPLLAAAPQVGKLIAFKLLEVSENYTPEVSEYKEGKILSFDPVTKQI 475


>sp|P38432|COIL_HUMAN Coilin OS=Homo sapiens GN=COIL PE=1 SV=1
          Length = 576

 Score = 41.6 bits (96), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 51  EFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI---LLAPVP 107
           ++  LP   + P+ G+ IA++L+ELTSS++P+ S ++ G+I  ++ +T ++   +L+ +P
Sbjct: 460 DYSLLPLLAAAPQVGEKIAFKLLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLP 519

Query: 108 EY--PLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRII 149
               P  F+        A   E    ++  + + +  L+D R+I
Sbjct: 520 ALREPGKFDLVYHNENGAEVVEYAVTQESKITVFWKELIDPRLI 563


>sp|O25424|ASPG_HELPY Probable L-asparaginase OS=Helicobacter pylori (strain ATCC 700392
           / 26695) GN=ansA PE=3 SV=1
          Length = 330

 Score = 35.0 bits (79), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 234 KSPAHTQENGKLNAWEEINLAL---SAKKAELSHVDDQ--SAKERSKQSSGHRLSYKALR 288
           ++ A    +G LN +  +++AL   SA K  L  +DD   SA+E  K  + H  ++KAL 
Sbjct: 122 RNAASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALN 181

Query: 289 SSALG 293
           S A+G
Sbjct: 182 SGAIG 186


>sp|Q2L2M5|SYT_BORA1 Threonine--tRNA ligase OS=Bordetella avium (strain 197N) GN=thrS
           PE=3 SV=1
          Length = 650

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 13  QKWGRDKAAFSKKSIYENF--DQFSEMPSFEKEISIGKDMEFEKLPPYISLPKEGDVIAY 70
           ++W RD A    KSI EN+  +  + +PS EK IS+ ++ EF  L     +P  G +  +
Sbjct: 142 EEWTRDDAVAYFKSIGENYKAEIIASIPSNEK-ISLYREGEFIDLCRGPHVPSTGKLKVF 200

Query: 71  RLIELTSSW 79
           +L++L  ++
Sbjct: 201 KLMKLAGAY 209


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.130    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,077,206
Number of Sequences: 539616
Number of extensions: 5232344
Number of successful extensions: 10038
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 10031
Number of HSP's gapped (non-prelim): 29
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)