Query 045520
Match_columns 305
No_of_seqs 55 out of 57
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 04:31:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mea_A SAGA-associated factor 81.4 3.3 0.00011 36.4 6.6 40 61-105 44-83 (180)
2 3mp6_A MBP, SGF29, maltose-bin 69.9 5 0.00017 37.9 5.0 42 59-105 385-426 (522)
3 2eqk_A Tudor domain-containing 51.6 19 0.00063 28.4 4.4 40 56-104 16-55 (85)
4 1rf3_B 24-residue peptide from 31.9 25 0.00085 22.4 1.9 11 125-135 14-24 (26)
5 4he6_A Peptidase family U32; u 29.0 1.1E+02 0.0037 22.6 5.4 45 88-145 9-55 (89)
6 2k52_A Uncharacterized protein 24.6 1.4E+02 0.0047 21.5 5.1 24 88-111 53-76 (80)
7 3kf8_B Protein TEN1; OB fold; 19.6 52 0.0018 27.6 2.1 24 88-111 29-52 (123)
8 2p9r_A Alpha-2-M, alpha-2-macr 17.5 2.6E+02 0.0088 20.5 5.5 39 63-103 14-52 (102)
9 3pqi_A Gene product 138; beta- 16.8 92 0.0032 28.3 3.3 28 82-109 22-49 (247)
10 3iz6_Q 40S ribosomal protein S 16.6 7.4 0.00025 33.4 -3.7 32 68-100 69-104 (141)
No 1
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=81.41 E-value=3.3 Score=36.39 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEEEE
Q 045520 61 LPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAP 105 (305)
Q Consensus 61 ~PqvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~Le~ 105 (305)
..++||.+|||+-. .-+-.+|..++|++|+..+++++++=
T Consensus 44 ~~~~G~~VAakvk~-----~~~~~~WILa~Vv~~~~~~~rYeV~D 83 (180)
T 3mea_A 44 VARPGDKVAARVKA-----VDGDEQWILAEVVSYSHATNKYEVDD 83 (180)
T ss_dssp CCCTTCEEEEEEEC-----CC--EEEEEEEEEEEETTTTEEEEEE
T ss_pred ccCCCCEEEEEcCC-----CCCCccEEEEEEEEEcCCCCEEEEec
Confidence 47899999999642 12336899999999999999998863
No 2
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=69.89 E-value=5 Score=37.88 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=32.2
Q ss_pred CCCCCCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEEEE
Q 045520 59 ISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAP 105 (305)
Q Consensus 59 a~~PqvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~Le~ 105 (305)
..+-++||.+|||.-- .-+=.+|..|+|++|++.+++++++=
T Consensus 385 ~~~~~~~~~~~~~~~~-----~~~~~~wi~~~~~~~~~~~~~y~v~d 426 (522)
T 3mp6_A 385 NAPILVGSEVAYKPRR-----GSADGEWIQCEVLKVVADGTRFEVRD 426 (522)
T ss_dssp CCCBCTTCEEEECCC----------CCEEEEEEEEEETTTTEEEEEE
T ss_pred ccccCCCCEEEEecCC-----CCCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 4557899999999641 22347999999999999999999873
No 3
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.61 E-value=19 Score=28.43 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEEE
Q 045520 56 PPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLA 104 (305)
Q Consensus 56 P~La~~PqvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~Le 104 (305)
.+...+|++||.+|.|. ++-..|+-|||+..+..++ +++.
T Consensus 16 ~~~~~~~k~g~~vaak~--------~d~n~WyRakV~~v~~~~~-veVl 55 (85)
T 2eqk_A 16 KWEPVKWENDMHCAVKI--------QDKNQWRRGQIIRMVTDTL-VEVL 55 (85)
T ss_dssp CCCCCCCCSSCEEEEEC--------SSSCCEEEEEEEEECSSSE-EEEE
T ss_pred CCcccCccCCCEEEEEe--------CCCCeEEEEEEEEecCCCe-EEEE
Confidence 33467899999999974 4556899999999999876 7766
No 4
>1rf3_B 24-residue peptide from lymphotoxin-B receptor; CD40, NF-KB signaling, LTBR, TNF receptor, TRAF3 crystallography, signaling protein; 3.50A {Homo sapiens} SCOP: j.116.1.1
Probab=31.85 E-value=25 Score=22.44 Aligned_cols=11 Identities=36% Similarity=0.277 Sum_probs=8.7
Q ss_pred CCCcccCCCCc
Q 045520 125 QSETLYGEDGS 135 (305)
Q Consensus 125 kfDlvYqeDGs 135 (305)
.|-++|||||.
T Consensus 14 ~ls~p~qedgk 24 (26)
T 1rf3_B 14 GLSTPHQEDGK 24 (26)
T ss_dssp CSSCCCCCCCC
T ss_pred ccCCcchhccc
Confidence 45569999995
No 5
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=28.97 E-value=1.1e+02 Score=22.65 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=29.7
Q ss_pred eeEEeeeeCCCCeEEEEEcCCCCCccccCCchhhhccCCCc-ccCCCC-cEEEEeccccc
Q 045520 88 VGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSET-LYGEDG-SLRIDFSLLLD 145 (305)
Q Consensus 88 eGKVv~yDp~tk~I~Le~v~~~P~~~e~pg~ed~s~~kfDl-vYqeDG-sl~VeyssLiD 145 (305)
+|.|..||..++.++|+.-..+-+ || .+ +..++| ...+....|.|
T Consensus 9 vG~V~~~~~~~g~~~ie~rN~f~~-----GD--------~iEi~~P~g~~~~~~v~~m~d 55 (89)
T 4he6_A 9 AGLVLGYDPETGIATVQQRNHFRP-----GD--------EVEFFGPEIENFTQVIEKIWD 55 (89)
T ss_dssp SEEEEEEETTTTEEEEEESSCBCT-----TC--------EEEEESTTSCCEEEECCCEEE
T ss_pred EEEEEEEeCCCCEEEEEEcCCcCC-----CC--------EEEEEcCCCCcEEEEeHHeEc
Confidence 899999999999999986544432 31 11 234566 66666666665
No 6
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=24.56 E-value=1.4e+02 Score=21.46 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=18.3
Q ss_pred eeEEeeeeCCCCeEEEEEcCCCCC
Q 045520 88 VGKISWYDSDTNKILLAPVPEYPL 111 (305)
Q Consensus 88 eGKVv~yDp~tk~I~Le~v~~~P~ 111 (305)
..+|+.+|+..++|.|.+.+-.|-
T Consensus 53 ~v~V~~vd~~~~~i~lsl~~~~~~ 76 (80)
T 2k52_A 53 IVQAIDVRPEKREIDFKYIPLEHH 76 (80)
T ss_dssp EEEEEEEETTTTEEEEEECSCC--
T ss_pred EEEEEEEECCCCEEEEEEeecccc
Confidence 467888999899999998776654
No 7
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=19.65 E-value=52 Score=27.59 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.6
Q ss_pred eeEEeeeeCCCCeEEEEEcCCCCC
Q 045520 88 VGKISWYDSDTNKILLAPVPEYPL 111 (305)
Q Consensus 88 eGKVv~yDp~tk~I~Le~v~~~P~ 111 (305)
.|-|++||+.+..+.|+.+|-+|-
T Consensus 29 L~QVisYd~~sa~L~l~~~p~~p~ 52 (123)
T 3kf8_B 29 LAQVKDFIPHESTIVIDKVPTITS 52 (123)
T ss_dssp EEEEEEEEGGGTEEEEECCGGGCC
T ss_pred EEEEEEEcCCCcEEEEEecCCCCC
Confidence 699999999999999999987764
No 8
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=17.54 E-value=2.6e+02 Score=20.51 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=29.9
Q ss_pred CCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEE
Q 045520 63 KEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILL 103 (305)
Q Consensus 63 qvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~L 103 (305)
|+||.|=||.+=+..++.|--. ..-.|.-.||..+.|.-
T Consensus 14 rPGetV~~~~~~~~~~~~p~~~--~~~~v~l~dp~g~~v~~ 52 (102)
T 2p9r_A 14 KPGQTVKFRVVSMDENFHPLNE--LIPLVYIQDPKGNRIAQ 52 (102)
T ss_dssp CTTCEEEEEEEEECGGGCBCCC--EEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEEEEECCCCcCCCC--CceEEEEECCCCCEEEE
Confidence 7999999999999888887532 32367778998776654
No 9
>3pqi_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 2.64A {Bacteriophage PHI92}
Probab=16.82 E-value=92 Score=28.32 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=21.4
Q ss_pred CCCceeeeEEeeeeCCCCeEEEEEcCCC
Q 045520 82 EPSSFRVGKISWYDSDTNKILLAPVPEY 109 (305)
Q Consensus 82 EVSsYKeGKVv~yDp~tk~I~Le~v~~~ 109 (305)
+|.---.|+|++||+....++++|.-..
T Consensus 22 ~i~TalPg~VvsvD~~~~tvtVqP~i~~ 49 (247)
T 3pqi_A 22 EVHTSLPVRVIGVDYGSKTVTLESIVKN 49 (247)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEESSCC
T ss_pred hccccccEEEEEEeCCCCEEEEEECcee
Confidence 3344468999999999999999986443
No 10
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=16.57 E-value=7.4 Score=33.40 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=24.0
Q ss_pred EEEEEeeeC----CCCCCCCCceeeeEEeeeeCCCCe
Q 045520 68 IAYRLIELT----SSWTPEPSSFRVGKISWYDSDTNK 100 (305)
Q Consensus 68 IAfKLLELS----~nYTPEVSsYKeGKVv~yDp~tk~ 100 (305)
|.+||-|-- .||.||||.... .++..||+|+.
T Consensus 69 isiklqEeERerrdnyvpe~S~ld~-~~ieVD~dT~e 104 (141)
T 3iz6_Q 69 ISLKLQEEERERRMDFVPEKSALEV-EEIRVDKETME 104 (141)
T ss_dssp SSCCSSCCCCCSCSSSSCCCSEEEE-CCCCSSHHHHH
T ss_pred cceehhHHHHHHHhccCCccccccc-cceeECHHHHH
Confidence 667776653 799999999876 46778887754
Done!