Query 045520
Match_columns 305
No_of_seqs 55 out of 57
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 04:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045520.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045520hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlra2 d.246.1.1 (A:39-145) m 27.5 27 0.002 26.3 3.9 22 83-104 5-26 (107)
2 d2nn6g1 b.40.4.5 (G:107-194) S 19.9 27 0.002 24.9 2.3 23 62-84 50-72 (88)
3 d2ja9a1 b.40.4.5 (A:62-151) S1 19.4 28 0.002 24.9 2.3 23 62-84 52-74 (90)
4 d1kl9a2 b.40.4.5 (A:3-88) Euka 18.5 32 0.0023 23.6 2.4 17 88-104 67-83 (86)
5 d2ix0a3 b.40.4.5 (A:558-644) E 17.0 49 0.0036 23.3 3.2 19 89-107 69-87 (87)
6 d1vlya1 b.44.2.1 (A:244-325) H 15.4 98 0.0071 21.4 4.5 39 59-106 13-52 (82)
7 d1bcoa1 b.48.1.1 (A:481-560) m 11.8 43 0.0031 23.7 1.6 26 78-103 38-66 (80)
8 d1iq6a_ d.38.1.4 (A:) (R)-spec 11.3 1.5E+02 0.011 20.8 4.6 30 58-104 82-111 (132)
9 d2p3ya1 e.65.1.1 (A:22-482) Hy 9.9 55 0.004 29.1 2.0 65 61-142 352-416 (461)
10 d1xjva1 b.40.4.3 (A:6-145) Pro 9.9 1E+02 0.0073 23.5 3.3 22 51-75 60-81 (140)
No 1
>d1vlra2 d.246.1.1 (A:39-145) mRNA decapping enzyme DcpS N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.50 E-value=27 Score=26.31 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCceeeeEEeeeeCCCCeEEEE
Q 045520 83 PSSFRVGKISWYDSDTNKILLA 104 (305)
Q Consensus 83 VSsYKeGKVv~yDp~tk~I~Le 104 (305)
+|.||.-||+.-|+.++.|.|.
T Consensus 5 l~~F~~~rvL~~d~~~K~i~ll 26 (107)
T d1vlra2 5 FSGFRVQKVLRESARDKIIFLH 26 (107)
T ss_dssp SSCCEEEEEEEEETTTTEEEEE
T ss_pred ccccEEEEecccCCCCCeEEEE
Confidence 8999999999999999999997
No 2
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.86 E-value=27 Score=24.87 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.2
Q ss_pred CCCCCEEEEEEeeeCCCCCCCCC
Q 045520 62 PKEGDVIAYRLIELTSSWTPEPS 84 (305)
Q Consensus 62 PqvGDvIAfKLLELS~nYTPEVS 84 (305)
-++||.|.-|++++..+-.|+||
T Consensus 50 l~~GD~V~arV~~v~~~~~~~Ls 72 (88)
T d2nn6g1 50 VQVGDLIYGQFVVANKDMEPEMV 72 (88)
T ss_dssp SCTTCEEEEEEEECCTTSCCEEE
T ss_pred cCCCCEEEEEEEEeCCCCCEEEE
Confidence 68999999988888888777774
No 3
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=19.43 E-value=28 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.0
Q ss_pred CCCCCEEEEEEeeeCCCCCCCCC
Q 045520 62 PKEGDVIAYRLIELTSSWTPEPS 84 (305)
Q Consensus 62 PqvGDvIAfKLLELS~nYTPEVS 84 (305)
-++||+|.-|++.+..+-.||||
T Consensus 52 l~~GDlV~arV~~v~~~~~~~Ls 74 (90)
T d2ja9a1 52 LQVGDLVYARVCTAEKELEAEIE 74 (90)
T ss_dssp CCTTCEEEEEEEECCTTSCCEEE
T ss_pred cCCCCEEEEEEEEECCCCCEEEE
Confidence 58999999999988888888885
No 4
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.48 E-value=32 Score=23.57 Aligned_cols=17 Identities=18% Similarity=0.093 Sum_probs=12.8
Q ss_pred eeEEeeeeCCCCeEEEE
Q 045520 88 VGKISWYDSDTNKILLA 104 (305)
Q Consensus 88 eGKVv~yDp~tk~I~Le 104 (305)
.++|+..|+..++|.|-
T Consensus 67 ~~kV~~vd~~~~ki~LS 83 (86)
T d1kl9a2 67 CVVVIRVDKEKGYIDLS 83 (86)
T ss_dssp EEEEEEEETTTTEEEEE
T ss_pred EEEEEEEECCCCEEEEE
Confidence 36778888888888774
No 5
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=17.04 E-value=49 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.0
Q ss_pred eEEeeeeCCCCeEEEEEcC
Q 045520 89 GKISWYDSDTNKILLAPVP 107 (305)
Q Consensus 89 GKVv~yDp~tk~I~Le~v~ 107 (305)
-+|+..|+.+++|..+|++
T Consensus 69 V~v~~vd~~~r~I~~~P~~ 87 (87)
T d2ix0a3 69 VTIAEVRMETRSIIARPVA 87 (87)
T ss_dssp EEEEEEETTTTEEEEEECC
T ss_pred EEEEEEecccCeEEEEECC
Confidence 3677789999999999974
No 6
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.36 E-value=98 Score=21.43 Aligned_cols=39 Identities=18% Similarity=0.480 Sum_probs=25.5
Q ss_pred CCCCCCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeC-CCCeEEEEEc
Q 045520 59 ISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDS-DTNKILLAPV 106 (305)
Q Consensus 59 a~~PqvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp-~tk~I~Le~v 106 (305)
+.+|+.||.|=-++ .++|. +.|+|++.-. ..+++++..|
T Consensus 13 ~~~p~~G~~le~~~---~~~wr------~~G~Vv~a~~~~dg~~~~laV 52 (82)
T d1vlya1 13 SRLPEAGEDLELKM---GENWR------RTGTVLAAVKLEDGQVVVQVV 52 (82)
T ss_dssp SSCCCTTCCEEEEE---TTEEE------EECEEEEEEECTTSCEEEEEE
T ss_pred cCCCCCCCEeEeec---CCCCc------cccEEEEEEECCCCcEEEEEE
Confidence 35799999764332 45553 8999997554 3566766654
No 7
>d1bcoa1 b.48.1.1 (A:481-560) mu transposase, C-terminal domain {Bacteriophage mu [TaxId: 10677]}
Probab=11.82 E-value=43 Score=23.75 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=18.8
Q ss_pred CCCCCCCceeeeE-EeeeeCCC--CeEEE
Q 045520 78 SWTPEPSSFRVGK-ISWYDSDT--NKILL 103 (305)
Q Consensus 78 nYTPEVSsYKeGK-Vv~yDp~t--k~I~L 103 (305)
-|.||+..|.--+ ++.|||.. ..|.+
T Consensus 38 Y~~~~L~~~~G~~V~vryDp~Dl~~~V~V 66 (80)
T d1bcoa1 38 YYNMALMNAGVKKVVVRFDPQQLHSTVYC 66 (80)
T ss_dssp EECGGGTSSSCSEEEEEECGGGTTTEEEE
T ss_pred EECHHHHhccCCEEEEEEChHHCCCeEEE
Confidence 5899999986434 78899873 45554
No 8
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=11.29 E-value=1.5e+02 Score=20.80 Aligned_cols=30 Identities=13% Similarity=0.043 Sum_probs=19.3
Q ss_pred CCCCCCCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEEE
Q 045520 58 YISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLA 104 (305)
Q Consensus 58 La~~PqvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~Le 104 (305)
+..|..+||.|-+ .++|+..++..+.|+++
T Consensus 82 f~~Pv~~GDtl~~-----------------~~~v~~~~~~~~~v~~~ 111 (132)
T d1iq6a_ 82 FKLPVFVGDEVTA-----------------EVEVTALREDKPIATLT 111 (132)
T ss_dssp ECSCCBTTCEEEE-----------------EEEEEEECSSSSEEEEE
T ss_pred ecccCCCcCEEEE-----------------EEEEEEEEcCCCEEEEE
Confidence 4567888998887 34555555555555444
No 9
>d2p3ya1 e.65.1.1 (A:22-482) Hypothetical protein VPA0735 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=9.89 E-value=55 Score=29.14 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEEEEcCCCCCccccCCchhhhccCCCcccCCCCcEEEEe
Q 045520 61 LPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSETLYGEDGSLRIDF 140 (305)
Q Consensus 61 ~PqvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~Le~v~~~P~~~e~pg~ed~s~~kfDlvYqeDGsl~Vey 140 (305)
-|--|+. .|+| .+..+ |-|..| =-|+.||.++..+.=-++.-|-+ + + ..+|.|++|||+.|-|
T Consensus 352 ~~L~G~~-~Y~L-~fp~~--pPv~~F--WSvT~Yd~~~~~lv~N~~~rysi-----~-----s-~~~l~~n~DGSl~Iy~ 414 (461)
T d2p3ya1 352 NWLSGEH-TYKL-HVPAN--VPASNF--WSTTVYDENNRLMIINDAGSPDI-----S-----S-RKNLKVNSDGSIDVYY 414 (461)
T ss_dssp CBCBTTS-CEEE-EECSS--CSEEEE--EEEEEEETTTCSBCCCSSCCCEE-----E-----T-TSCCCBCTTSCEEEEE
T ss_pred CccCCCc-cEEE-EeCCC--CCccCE--EEEEEEcCCCcccccCccccccc-----C-----C-CcCceECCCCCEEEEE
Confidence 3444554 4655 46555 545433 25778997653221001222222 1 1 3468999999999987
Q ss_pred cc
Q 045520 141 SL 142 (305)
Q Consensus 141 ss 142 (305)
..
T Consensus 415 ~~ 416 (461)
T d2p3ya1 415 GP 416 (461)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 10
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.87 E-value=1e+02 Score=23.47 Aligned_cols=22 Identities=27% Similarity=0.745 Sum_probs=15.5
Q ss_pred cccCCCCCCCCCCCCCEEEEEEeee
Q 045520 51 EFEKLPPYISLPKEGDVIAYRLIEL 75 (305)
Q Consensus 51 Dye~LP~La~~PqvGDvIAfKLLEL 75 (305)
..+.||. -+++||+|.++-+.|
T Consensus 60 ~~~~LP~---v~~~GDII~l~r~~v 81 (140)
T d1xjva1 60 NYEALPI---IYKNGDIVRFHRLKI 81 (140)
T ss_dssp SGGGSCC---CCSTTCEEEEEEEEE
T ss_pred ChHHCCC---CCCCCCEEEEEEEEE
Confidence 4566663 357899999977644
Done!