BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045521
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/258 (57%), Positives = 171/258 (66%), Gaps = 55/258 (21%)
Query: 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
GADAELID+LPKLEIV++ S GLDK+DL+KC+EKG++VTNTPDVLTDDVAD AIGL LAV
Sbjct: 76 GADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135
Query: 62 LRR------FVRSEDGEMG-YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
LRR +VR + G +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C ISY SR
Sbjct: 136 LRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 195
Query: 115 AEKPNTKY------------------------------------------------KGAL 126
++KPNT Y +G
Sbjct: 196 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
VDE ELVSAL+E RL A LDVFE EP+VPE+LFGLENVVLLPH SGT ETRK AD+V
Sbjct: 256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315
Query: 187 IENLEACFLNKPLLTPVV 204
+ NLEA F KPLLTPVV
Sbjct: 316 VGNLEAHFSGKPLLTPVV 333
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 111/249 (44%), Gaps = 56/249 (22%)
Query: 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
G E + LP L I+A G DK+DL + + + I VT TP VL DDVAD I L LAV
Sbjct: 82 GLSNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAV 141
Query: 62 LR------RFVRSEDGEMGYKLTTKIS--GRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
LR R VR G +L S G+ +G++GLG+IG A+A RAEAFG + Y +
Sbjct: 142 LRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWN 201
Query: 114 RAEKPNTKY------------------------------------------------KGA 125
R+ + +G
Sbjct: 202 RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADI 185
+VDE L+ AL +A A LDVF +EP + E N VL PH S T ETR A +
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKL 321
Query: 186 VIENLEACF 194
V+ NL A F
Sbjct: 322 VLANLAAHF 330
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 109/250 (43%), Gaps = 63/250 (25%)
Query: 5 AELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
AE+I L P L+ +AT S G D ID + GI+V +TPDVL+D A+ A L L R
Sbjct: 85 AEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACR 144
Query: 64 ------RFVRSEDGEMGYK----LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
R VRS G+ L ++GR +GI G GRIG A+A RA FG I Y +
Sbjct: 145 RGYEADRXVRSGSWP-GWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHN 203
Query: 114 RAE-------------------------------KPNTK--------------------Y 122
R +P K
Sbjct: 204 RTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
+G L+++ L+ AL L AA LDVF +EP + L+N+ L PH S T ETR A
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAX 323
Query: 183 ADIVIENLEA 192
++I+ +EA
Sbjct: 324 GWLLIQGIEA 333
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 122/251 (48%), Gaps = 64/251 (25%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
D E+ ++ PKL IVA + G D ID+ + ++GI VTNTPDVLTD AD A L LA R
Sbjct: 58 DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 64 ------RFVRSEDGEM-------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
RFVRS + + + L + G+++GIIGLGRIG A+AKRA+ F I
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177
Query: 111 YRSRAEKP------NTKYK----------------------------------------- 123
Y SR K N ++K
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
G +VD + LV AL E +A A LDVFE EP EELF L+NVVL PH S + R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 180 KATADIVIENL 190
+ A++V +NL
Sbjct: 298 EGMAELVAKNL 308
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 122/251 (48%), Gaps = 64/251 (25%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
D E+ ++ PKL IVA + G D ID+ + ++GI VTNTPDVLTD AD A L LA R
Sbjct: 58 DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 64 ------RFVRSEDGEM-------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
RFVRS + + + L + G+++GIIGLGRIG A+AKRA+ F I
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRIL 177
Query: 111 YRSRAEKP------NTKYK----------------------------------------- 123
Y SR K N ++K
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
G +VD + LV AL E +A A LDVFE EP EELF L+NVVL PH S + R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 180 KATADIVIENL 190
+ A++V +NL
Sbjct: 298 EGXAELVAKNL 308
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 63/248 (25%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR-- 63
E++++ +L++++ SAG D IDL + ++GI VT +L++ VA+ +GL + ++R
Sbjct: 57 EVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKI 116
Query: 64 ----RFVRSEDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
+F+R + E G+K + G+ VGI+G+G IG A+A+R FG + Y S
Sbjct: 117 HYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWS 176
Query: 114 RAEKPNT---------------------------------------------KY-----K 123
R K N KY +
Sbjct: 177 RHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGR 236
Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLE-NVVLLPHAASGTEETRKAT 182
GALVDE + A+ + +L DVFE EP ELF E VL PH A E ++
Sbjct: 237 GALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDV 296
Query: 183 ADIVIENL 190
+ENL
Sbjct: 297 GFRAVENL 304
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 111/254 (43%), Gaps = 72/254 (28%)
Query: 13 KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRS---- 68
L++++T S G+D + L + K++GI+V TPDVLTD A+ A+ L L RR +
Sbjct: 76 NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 135
Query: 69 EDGEM---------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEK 117
++G GY LT +VGIIGLGRIG A+A+R + FG F+ Y R +
Sbjct: 136 KNGGWTSWKPLWLCGYGLTQS----TVGIIGLGRIGQAIARRLKPFGVQRFL-YTGRQPR 190
Query: 118 P-------------------------------------NTKY--------------KGAL 126
P N + +G +
Sbjct: 191 PEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDV 250
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRKATADI 185
V++ +L AL ++AAA LDV EP L L+N V+LPH S T TR + +
Sbjct: 251 VNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLL 310
Query: 186 VIENLEACFLNKPL 199
NL A +P+
Sbjct: 311 AANNLLAGLRGEPM 324
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 110/253 (43%), Gaps = 72/253 (28%)
Query: 13 KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRS---- 68
L++++T S G+D + L + K++GI+V TPDVLTD A+ A+ L L RR +
Sbjct: 74 NLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 133
Query: 69 EDGEM---------GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEK 117
++G GY LT +VGIIGLGRIG A+A+R + FG F+ Y R +
Sbjct: 134 KNGGWTSWKPLWLCGYGLTQS----TVGIIGLGRIGQAIARRLKPFGVQRFL-YTGRQPR 188
Query: 118 P-------------------------------------NTKY--------------KGAL 126
P N + +G +
Sbjct: 189 PEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDV 248
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRKATADI 185
V++ +L AL ++AAA LDV EP L L+N V+LPH S T TR + +
Sbjct: 249 VNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLL 308
Query: 186 VIENLEACFLNKP 198
NL A +P
Sbjct: 309 AANNLLAGLRGEP 321
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 106/252 (42%), Gaps = 63/252 (25%)
Query: 6 ELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
E+ID +P+ ++ ++T S G D IDL CK +GI+V N P +T A+ A+ L L RR
Sbjct: 59 EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 65 F--------VRSEDGEMGYKLT-TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RS 113
RS G +L K+ +++GI G G IG A+AKRA+ F I Y
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 114 RAEK-------------------------------PNTKY-------------------- 122
RA P T+Y
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
+G LVD +V+AL RLA A DVF EP + E + L N L PH S + R+
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 183 ADIVIENLEACF 194
A + ++A F
Sbjct: 299 AHQANDLIDALF 310
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 120/258 (46%), Gaps = 59/258 (22%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DAE++D L+++A S G+D +DL +E+GI+VT+TP VLT+ AD + L LAV R
Sbjct: 56 DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 64 RFVR----SEDG-----EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
R V + DG L + G ++G++G+GRIG AVAKRA AFG + Y +R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 115 AEKP-----------------------------------------------NTKYKGALV 127
KP NT +GALV
Sbjct: 176 TPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTA-RGALV 234
Query: 128 DESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHAASGTEETRKATADIV 186
D LV A L L A LDV + EP P L+ L N V+ PH S TR+ A++
Sbjct: 235 DTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVA 293
Query: 187 IENLEACFLNKPLLTPVV 204
+ENL A + PVV
Sbjct: 294 VENLLAVLEGREPPNPVV 311
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 57/232 (24%)
Query: 5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
A++I++ KL++V G+D +DL KGI V NTP+ + A+ G+ + + R+
Sbjct: 81 ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQ 140
Query: 65 FVRS----EDGEMGYK--LTTKISGRSVGIIGLGRIGMAVAKRAE--------------- 103
++ +DG+ K + T+++G+++GI+GLGRIG VA R +
Sbjct: 141 IPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 200
Query: 104 ----AFG------------C-FISYRSRAEKPNTKY-------------------KGALV 127
+FG C FI+ + T +G +V
Sbjct: 201 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 260
Query: 128 DESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
DE L+ AL + A A LDVF EP L ENV+ PH + T+E +
Sbjct: 261 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQ 312
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 105/240 (43%), Gaps = 58/240 (24%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DAE++ + PKL+IVA GLD +D+ +G+ V N P A+ A+ L LA R
Sbjct: 57 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 64 RFVRSEDG--EMGYKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFI----SYRS 113
+ ++ E +K + T+I G++VG++GLGRIG VA+R AFG ++ Y S
Sbjct: 117 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS 176
Query: 114 RAE-------------------------------------------KPN----TKYKGAL 126
A KP +G L
Sbjct: 177 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 236
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR-KATADI 185
VDE+ L A+ + AA LDVF EP LF L VV+ PH + T E + +A D+
Sbjct: 237 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDV 296
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 105/240 (43%), Gaps = 58/240 (24%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DAE++ + PKL+IVA GLD +D+ +G+ V N P A+ A+ L LA R
Sbjct: 56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 64 RFVRSEDG--EMGYKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFI----SYRS 113
+ ++ E +K + T+I G++VG++GLGRIG VA+R AFG ++ Y S
Sbjct: 116 QIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS 175
Query: 114 RAE-------------------------------------------KPN----TKYKGAL 126
A KP +G L
Sbjct: 176 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 235
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR-KATADI 185
VDE+ L A+ + AA LDVF EP LF L VV+ PH + T E + +A D+
Sbjct: 236 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDV 295
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 109/233 (46%), Gaps = 60/233 (25%)
Query: 7 LIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFV 66
+I+S PKL+++A GLD ID+ KEKGI+V N P + VA+ A+GL +V R+
Sbjct: 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIA 119
Query: 67 ----RSEDGEMGYK--LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFI------SYRSR 114
+ +G K + ++ G+++GIIG GRIG VAK A A G I R
Sbjct: 120 FADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEER 179
Query: 115 AEKPNTKY---------------------------------------------KGALVDE 129
A++ N K+ +G +VD
Sbjct: 180 AKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDT 239
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRK 180
+ LV AL E +A A LDVFE EP +P++ L +NVVL PH + T E ++
Sbjct: 240 NALVKALKEGWIAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEAQE 291
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 96/235 (40%), Gaps = 60/235 (25%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR- 64
E+ + +L V S G ++++L +++GI V N P T VA+ IG + ++RR
Sbjct: 73 EIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI 132
Query: 65 FVRSEDGEMGYKLTTKIS-----GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK-- 117
F RS G T I G+++GI+G G IG V AE+ G + Y ++K
Sbjct: 133 FPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ 192
Query: 118 ------------------------PNTKY-----------------------KGALVDES 130
P++K +G+ VD
Sbjct: 193 YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLE 252
Query: 131 ELVSALLEDRLAAAVLDVFEHEPQVPEELF-----GLENVVLLPHAASGTEETRK 180
L L E LA A +DVF EP E F GLENV+L PH TEE ++
Sbjct: 253 ALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQE 307
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DA+ + + P+L ++ G D D+ C +G+ +T PD+LT A+ AIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64 R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
FVRS G T + +VG +G+G IG+A+A R + +G + Y +R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR 176
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHAASG 174
+G++VDE+ +++AL +L DVFE E Q+ L N + PH S
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA 296
Query: 175 TEETR 179
R
Sbjct: 297 VRAVR 301
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DA+ + + P+L ++ G D D+ C +G+ +T PD+LT A+ AIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64 R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
FVRS G T + +VG +G+G IG+A+A R + +G + Y +R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR 176
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHAASG 174
+G++VDE+ +++AL +L DVFE E Q+ L N + PH S
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA 296
Query: 175 TEETR 179
R
Sbjct: 297 VRAVR 301
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 14/143 (9%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
EL+ P+L+++ T S G D IDL CK+KGI VT+ P + VA+ L +++R
Sbjct: 57 ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 66 VRSED--GEMGYKLTTKISGR-----SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118
R ED ++ + ++I R ++G+IG GRIG VA AFG + ++
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 119 NTKYKGA-------LVDESELVS 134
+ K KG L+ ES+++S
Sbjct: 177 DLKEKGCVYTSLDELLKESDVIS 199
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 68/244 (27%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DA+ + + P+L ++ G D D+ C +G+ +T PD+LT A+ AIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64 R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYR-SR 114
FVRS G T + +VG +G+G IG+A+A R + +G + Y ++
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 115 AEKPNTKYK--------------------------------------------------- 123
A T+ +
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHAASGT 175
G++VDE+ +++AL +L DVFE E Q+ L N + PH S
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 176 EETR 179
R
Sbjct: 298 RAVR 301
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 68/244 (27%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DA+ + + P+L ++ G D D+ C +G+ +T PD+LT A+ AIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64 R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYR-SR 114
FVRS G T + +VG +G+G IG+A+A R + +G + Y ++
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 115 AEKPNTKYK--------------------------------------------------- 123
A T+ +
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 124 GALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHAASGT 175
G++VDE+ +++AL +L DVFE E Q+ L N + PH S
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 176 EETR 179
R
Sbjct: 298 RAVR 301
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 58/243 (23%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
++I+ KL+I+A GLD ID + +++ I+V P TD + IGL +A R+
Sbjct: 61 DVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120
Query: 66 VRS----EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC------FISYRSRA 115
S + G +++G+++GI+G GRIG V A A G + R +A
Sbjct: 121 YTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKA 180
Query: 116 EKPNTKYKG--ALVDESELVS------------------ALLED---------------- 139
EK N K L+ S+++S L++D
Sbjct: 181 EKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGK 240
Query: 140 ---------RLAAAVLDVFEHEPQVPE---ELFGLENVVLLPHAASGTEETRKATADIVI 187
++ A DVF +EP E EL E V++ H + T+E +K A++
Sbjct: 241 ALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTT 300
Query: 188 ENL 190
+NL
Sbjct: 301 QNL 303
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 109/268 (40%), Gaps = 69/268 (25%)
Query: 4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
+A+LI LP L++ A AG D +DL E+G+ N+ +D A+ L L+V
Sbjct: 70 NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 63 R------RFVRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRA-EAFGCF 108
R R R+ D E ++ +I G +G +GLG I +A++A G
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 109 ISY---------------------------RS----------------------RAEKPN 119
+ Y RS A KP
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249
Query: 120 TKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
++ +G ++ + L++AL +L +A LDV E EPQV +EL +++V L H
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVA 309
Query: 176 EETRKATADIVIENLEACFLN-KPLLTP 202
ET + + N++ L KPLLTP
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTP 337
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DA+ + + P+L ++ G D D+ C +G+ +T PD+LT A+ AIGL + + R
Sbjct: 59 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 64 R------FVRSED--GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
FVRS G T + +VG +G G IG+A A R + +G + Y +
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHA 176
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHAASG 174
+G++VDE+ +++AL +L DVFE E Q+ L N + PH S
Sbjct: 238 RGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSA 297
Query: 175 TEETR 179
R
Sbjct: 298 VRAVR 302
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 109/268 (40%), Gaps = 69/268 (25%)
Query: 4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
+A++I LP L++ A AG D +DL E+G+ N+ +D A+ L L+V
Sbjct: 70 NADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 63 R------RFVRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRA-EAFGCF 108
R R R+ D E ++ +I G +G +GLG I +A++A G
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 109 ISY---------------------------RS----------------------RAEKPN 119
+ Y RS A KP
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249
Query: 120 TKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
++ +G ++ + L++AL +L +A LDV E EPQV +EL +++V L H
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVA 309
Query: 176 EETRKATADIVIENLEACFLN-KPLLTP 202
ET + + N++ L KPLLTP
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTP 337
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 69/268 (25%)
Query: 4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
+A+LI LP L++ A AG D +DL E+G+ N+ +D A+ L L+V
Sbjct: 70 NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 63 R------RFVRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRA-EAFGCF 108
R R R+ D E ++ +I G +G +GLG I +A++A G
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 109 ISY---------------------------RS----------------------RAEKPN 119
+ Y RS A KP
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249
Query: 120 TKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
++ +G ++ + L++AL +L +A LDV E EP V +EL +++V L H
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVA 309
Query: 176 EETRKATADIVIENLEACFLN-KPLLTP 202
ET + + N++ L KPLLTP
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTP 337
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 62/236 (26%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
++I++ KL + + G +++DL ++GI V N P T VA+ IG L +LR
Sbjct: 62 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 66 ----VRSEDGEMGYKL---TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
++ G +G KL + + G+ +GIIG G IG + AE+ G ++ +
Sbjct: 122 PEANAKAHRG-VGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKL 180
Query: 113 -----------------------SRAEKPNTKY--------------------KGALVDE 129
E P+TK +G +VD
Sbjct: 181 PLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDI 240
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
L AL LA A +DVF EP + F +NV+L PH T+E ++
Sbjct: 241 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 296
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E ++ L I+ +G D ID+ + GI V N P ++ AD+ + L + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 66 V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
R + E ++ + +I G ++GIIGLGR+G AVA RA+AFG
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
+G LVDE L AL E R+ A LDV E EP Q P L N++ PHAA +E
Sbjct: 263 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQA 320
Query: 177 ----------ETRKATADIVIENLEACFLNKPLLT 201
E R+A + ++L+ C +NK LT
Sbjct: 321 SIEMREEAAREIRRAITGRIPDSLKNC-VNKDHLT 354
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E ++ L I+ +G D ID+ + GI V N P ++ AD+ + L + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 66 V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
R + E ++ + +I G ++GIIGLGR+G AVA RA+AFG
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
+G LVDE L AL E R+ A LDV E EP Q P L N++ PHAA +E
Sbjct: 263 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQA 320
Query: 177 ----------ETRKATADIVIENLEACFLNKPLLT 201
E R+A + ++L+ C +NK LT
Sbjct: 321 SIEMREEAAREIRRAITGRIPDSLKNC-VNKDHLT 354
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E ++ L I+ +G D ID+ + GI V N P ++ AD+ + L + RR
Sbjct: 78 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 66 V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
R + E ++ + +I G ++GIIGLGR+G AVA RA+AFG
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 191
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTEE 177
+G LVDE L AL E R+ A LDV E EP Q P L N++ PHAA +E+
Sbjct: 260 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQ 316
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 62/236 (26%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
++I++ KL + + G +++DL ++GI V N P T VA+ IG L +L R
Sbjct: 68 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 126
Query: 66 VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
V + + + K++ G+ +GIIG G IG + AE+ G ++ +
Sbjct: 127 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL 186
Query: 113 -----------------------SRAEKPNTK--------------------YKGALVDE 129
E P+TK +G +VD
Sbjct: 187 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
L AL LA A +DVF EP + F +NV+L PH T+E ++
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 62/236 (26%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
++I++ KL + + G +++DL ++GI V N P T VA+ IG L +L R
Sbjct: 68 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 126
Query: 66 VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
V + + + K++ G+ +GIIG G IG + AE+ G ++ +
Sbjct: 127 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL 186
Query: 113 -----------------------SRAEKPNTK--------------------YKGALVDE 129
E P+TK +G +VD
Sbjct: 187 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
L AL LA A +DVF EP + F +NV+L PH T+E ++
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 62/236 (26%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
++I++ KL + G +++DL ++GI V N P T VA+ IG L +L R
Sbjct: 67 DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 125
Query: 66 VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
V + + + K++ G+ +GIIG G IG + AE+ G ++ +
Sbjct: 126 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL 185
Query: 113 -----------------------SRAEKPNTKY--------------------KGALVDE 129
E P+TK +G +VD
Sbjct: 186 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 245
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
L AL LA A +DVF EP + F +NV+L PH T+E ++
Sbjct: 246 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQE 301
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E ++ L ++ +G D +D+ E GI V N P ++ AD+ I L + RR
Sbjct: 62 EDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRN 121
Query: 66 V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
R + E ++ + +I G ++G+IG GR G AVA RA+AFG
Sbjct: 122 TWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFG 175
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
+G LVDE L AL E R+ A LDV E EP Q P L N++ PH A +E
Sbjct: 244 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGP--LKDAPNLICTPHTAWYSEQA 301
Query: 177 ----------ETRKATADIVIENLEACFLNKPLL 200
E R+A + E+L C +NK
Sbjct: 302 SLEMREAAATEIRRAITGRIPESLRNC-VNKEFF 334
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 62/236 (26%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
++I++ KL + G +++DL ++GI V N P T VA+ IG L +L R
Sbjct: 68 DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG-ELLLLLRG 126
Query: 66 VRSEDGEMGYKLTTKIS-------GRSVGIIGLGRIGMAVAKRAEAFGCFISYR------ 112
V + + + K++ G+ +GIIG G IG + AE+ G ++ +
Sbjct: 127 VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKL 186
Query: 113 -----------------------SRAEKPNTKY--------------------KGALVDE 129
E P+TK +G +VD
Sbjct: 187 PLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDI 246
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEELFG-----LENVVLLPHAASGTEETRK 180
L AL LA A +DVF EP + F +NV+L PH T+E ++
Sbjct: 247 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQE 302
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 75/256 (29%)
Query: 14 LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF------VR 67
++ + + G D ID+ K+ GI+++N P +A+ A+ TL +LR ++
Sbjct: 69 IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQ 128
Query: 68 SEDGE-MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAEKPNTKY 122
+ D E G + ++ ++VG++G G IG K + FG + Y + + P+ Y
Sbjct: 129 AGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDY 188
Query: 123 ---------------------------------------------KGALVDESELVSALL 137
+ L+D ++S L
Sbjct: 189 VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248
Query: 138 EDRLAAAVLDVFEHEPQ--------------VPEELFGLENVVLLPHAASGTEETRKATA 183
+LA +D +E+E + + +EL G+ NVVL PH A TE A
Sbjct: 249 SGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTE---TAVH 305
Query: 184 DIVIENLEAC--FLNK 197
++V +L+ FL K
Sbjct: 306 NMVYFSLQHLVDFLTK 321
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E ++ L I+ +G D ID+ + GI V N P ++ AD+ + L + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 66 V----------RSEDGEMGYKLTT---KISGRSVGIIGLGRIGMAVAKRAEAFG 106
R + E ++ + +I G ++GIIGL R+G AVA RA+AFG
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFG 194
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEP----QVPEELFGLENVVLLPHAASGTE-- 176
+G LVDE L AL E R+ A LDV E EP Q P L N++ PHAA +E
Sbjct: 263 RGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP--LKDAPNLICTPHAAWYSEQA 320
Query: 177 ----------ETRKATADIVIENLEACFLNKPLLT 201
E R+A + ++L+ C +NK LT
Sbjct: 321 SIEMREEAAREIRRAITGRIPDSLKNC-VNKDHLT 354
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 60/237 (25%)
Query: 13 KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGE 72
+L+ V SAG+D + L + G+ V NT + D ++++ + L+V+R + + +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 73 MGYK------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP-------- 118
G + T+ ++G+ + I G G+IG ++A +A A G + + P
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 119 -----------------------------------NTKYKGALV--------DESELVSA 135
TK + L+ D + L++A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 136 LLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATADIVIENL 190
L +L+ A LDV E EP +P + L+ ++V++ PH + R I N
Sbjct: 241 LDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 101/259 (38%), Gaps = 76/259 (29%)
Query: 6 ELIDSLPKLEIVATCS-----AGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
+L+D LPKL+I++ AG IDL C +KG+ V A+ L +A
Sbjct: 64 QLLDRLPKLKIISQTGRVSRDAG-GHIDLEACTDKGVVVLEGKGSPVAP-AELTWALVMA 121
Query: 61 VLRR---FVRS-EDG---EMGYKLTTK---------ISGRSVGIIGLGRIGMAVAKRAEA 104
RR +V S + G + G K TT + G+++GI G G+IG VA A
Sbjct: 122 AQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRA 181
Query: 105 FGCFI--------SYRSRAE---------------------------------------- 116
FG + R+RA+
Sbjct: 182 FGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRM 241
Query: 117 KPNTKY----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHA 171
KP + + LV+E+ +V+AL R A +DVFE EP + L +EN + PH
Sbjct: 242 KPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHI 301
Query: 172 ASGTEETRKATADIVIENL 190
E+ + I +N+
Sbjct: 302 GYVERESYEMYFGIAFQNI 320
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 21 SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74
+ G+D ID+ K KE G Q+TN P + +A+ A +LR+ V D
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVS 134
+ ++ + VG++G G IG + E FG + P + KG VD
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS----- 192
Query: 135 ALLEDRLAAAVLDVFE-HEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENL 190
L+D A DV H P VP + + + E K D+VI N+
Sbjct: 193 --LDDLYKQA--DVISLHVPDVPANVHMIND-----------ESIAKMKQDVVIVNV 234
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 21 SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74
+ G+D ID+ K KE G Q+TN P + +A+ A +LR+ V D
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVS 134
+ ++ + VG++G G IG + E FG + P + KG VD
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS----- 192
Query: 135 ALLEDRLAAAVLDVFE-HEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENL 190
L+D A DV H P VP + + + E K D+VI N+
Sbjct: 193 --LDDLYKQA--DVISLHVPDVPANVHMIND-----------ESIAKMKQDVVIVNV 234
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
AE I PKL++ T G D +DL + I V ++ VA+ + + L ++R
Sbjct: 106 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 165
Query: 65 FVRSEDG--EMGYKL------TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116
++ S D G+ + + + G VG + GRIG+ V + F + Y R
Sbjct: 166 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 225
Query: 117 KP 118
P
Sbjct: 226 LP 227
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
AE I PKL++ T G D +DL + I V ++ VA+ + + L ++R
Sbjct: 105 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 164
Query: 65 FVRSEDG--EMGYKL------TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116
++ S D G+ + + + G VG + GRIG+ V + F + Y R
Sbjct: 165 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 224
Query: 117 KP 118
P
Sbjct: 225 LP 226
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 59/218 (27%)
Query: 13 KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF--VRSED 70
KL + AG+D + +C+ + Q+TN + +++ G L+++R+ R +
Sbjct: 67 KLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQ 125
Query: 71 GEMGYKLT--TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKY------ 122
+ ++ + GR++ I+G G IG +A + FG + SR+ + +
Sbjct: 126 KQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQL 185
Query: 123 ---------------------------------------------KGALVDESELVSALL 137
+G ++E +L++AL
Sbjct: 186 PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245
Query: 138 EDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAAS 173
+L AVLDVFE EP +P + L+G N+++ PH ++
Sbjct: 246 TGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSA 282
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 21 SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSE------DGEMG 74
+ G+D ID+ K KE G Q+TN P + +A+ A VLR+ R + D
Sbjct: 78 NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWA 137
Query: 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVS 134
+ ++ + VG++G G IG + E FG + + P + KG VD
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDS----- 192
Query: 135 ALLEDRLAAAVLDVFE-HEPQVP 156
L+D A DV H P VP
Sbjct: 193 --LDDLYKQA--DVISLHVPDVP 211
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 71/236 (30%)
Query: 23 GLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR-----RFVRSEDGEMGYK- 76
G + I+ K+ + VTN P +A+ + + +LR R+ D + +
Sbjct: 80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPS 139
Query: 77 --LTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---------------FISY-------- 111
++ +I +VG+IG+G IG AVA+ A G F++Y
Sbjct: 140 NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLK 199
Query: 112 ---------------------RSRAEKPNTKY-----KGALVDESELVSALLEDRLAAAV 145
+ E + Y +G LVD L+ AL + +A A
Sbjct: 200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAG 259
Query: 146 LDV-------FEH----EPQVPEE---LFGLENVVLLPHAASGTEETRKATADIVI 187
LD F H + ++PE+ L + NVV+ PH+A TE + + I +
Sbjct: 260 LDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICL 315
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E I L++ T G D +DL ++ + V + VA+ + + L+++R +
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 66 VRSEDG--EMGYKLTTKIS------GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
+ S + + G+ + +S VG + GRIG+AV +R F + Y R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 118 PNT 120
P +
Sbjct: 227 PES 229
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E I L++ T G D +DL ++ + V + VA+ + + L+++R +
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 66 VRSEDG--EMGYKLTTKIS------GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
+ S + + G+ + +S VG + GRIG+AV +R F + Y R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 118 PNT 120
P +
Sbjct: 227 PES 229
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRF 65
E I L++ T G D +DL ++ + V + VA+ + + L+++R +
Sbjct: 106 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 165
Query: 66 VRSEDG--EMGYKLTTKIS------GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117
+ S + + G+ + +S VG + GRIG+AV +R F + Y R
Sbjct: 166 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 225
Query: 118 PNT 120
P +
Sbjct: 226 PES 228
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
AE I L+++ T G D IDL G+ V VA+ + L ++R
Sbjct: 78 AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 137
Query: 65 FVRSED----GE-----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
FV + GE + Y+ + G+++G +G GRIG + +R + FGC + Y R
Sbjct: 138 FVPGYNQVVKGEWNVAGIAYR-AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196
Query: 116 E 116
+
Sbjct: 197 Q 197
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
AE I L+++ T G D IDL G+ V VA+ + L ++R
Sbjct: 84 AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 143
Query: 65 FVRSED----GE-----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
FV + GE + Y+ + G+++G +G GRIG + +R + FGC + Y R
Sbjct: 144 FVPGYNQVVKGEWNVAGIAYR-AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 202
Query: 116 E 116
+
Sbjct: 203 Q 203
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 3 ADAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
A+ + +D KL + + T +AG D ID KE G + P + +A+ A+ +
Sbjct: 57 ANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMM 116
Query: 61 VLRR--FVRSEDGEMGYK-----LTTKISGRSVGIIGLGRIGMAVAKRAEAFG 106
+LR + S + +K + ++ +VG++GLGRIG A+ G
Sbjct: 117 LLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMG 169
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKG-----IQVTNTPDVLTDDVADAAIGLTLA 60
E ID KL++V G D IDL + G ++VT + V VA+ + L
Sbjct: 78 ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVV---SVAEHVVMTMLV 134
Query: 61 VLRRFVRSEDGEMGY--------KLTTKISGRSVGIIGLGRIGMAVAKRAEAF 105
++R FV + + + + K I G+++ IG GRIG V +R F
Sbjct: 135 LVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPF 187
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 6 ELIDSLPKLEIVATCSAGLDKIDLVKCKEKG-----IQVTNTPDVLTDDVADAAIGLTLA 60
E ID KL++V G D IDL + G ++VT + V VA+ + L
Sbjct: 77 ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVV---SVAEHVVMTMLV 133
Query: 61 VLRRFVRSEDGEMGY--------KLTTKISGRSVGIIGLGRIGMAVAKRAEAF 105
++R FV + + + + K I G+++ IG GRIG V +R F
Sbjct: 134 LVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPF 186
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 34 EKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK------------I 81
++GI V T V + VA+ +G LA+ R V D ++ ++ T+ I
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIV---DADIAFQEGTELWGGEGNASARLI 174
Query: 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRL 141
+G +GI+G G +G A+ + +R+R + + ++E+ + A LED L
Sbjct: 175 AGSEIGIVGFGDLGKALRR------VLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVL 228
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
AE + P+L+ + +AGLD + + V D VA+ A+ L LA +R
Sbjct: 42 AEELAKXPRLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKR 100
Query: 65 FV----RSEDGEMGYKLTTK-ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN 119
+ + + G+ G + I G V ++GLG IG V K A G + SR K
Sbjct: 101 IIQYGEKXKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-- 158
Query: 120 TKYKGALVDESELVSALLEDRLAAAVLDVFEH 151
+G + L AL E R A L + +H
Sbjct: 159 ---EGPWRFTNSLEEALREARAAVCALPLNKH 187
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 14 LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEM 73
+ V T +AG D +D K+ GI + P V + L + R DG
Sbjct: 62 INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLXLAER-----DG-- 114
Query: 74 GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG-----CFISYRSRAEKPNTKYKGALVD 128
+ R++GI+G+G +G + R EA G C +R ++ + + LV
Sbjct: 115 -----FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQ 169
Query: 129 ESELVS 134
E+++++
Sbjct: 170 EADVLT 175
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 54/144 (37%)
Query: 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK--------------------------- 117
SVGI G G +G VA+ +A+G + SR+ K
Sbjct: 141 SVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINL 200
Query: 118 -PNTKY-----------------------KGALVDESELVSALLEDRLAAAVLDVFEHEP 153
PNT +G V E++L++AL +L A LDVF EP
Sbjct: 201 LPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP 260
Query: 154 QVPEE--LFGLENVVLLPHAASGT 175
+P+E L+ V PH A+ T
Sbjct: 261 -LPQESPLWRHPRVAXTPHIAAVT 283
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDR 140
+ G V + GLG++G AVA AE G + + A Y +D +E++SA E
Sbjct: 216 LRGARVVVQGLGQVGAAVALHAERLGMRVV--AVATSMGGMYAPEGLDVAEVLSA-YEAT 272
Query: 141 LAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT---EETRKATADIVIE 188
+ LD+ PEE+FGLE VL+ A G + R+ A V+E
Sbjct: 273 GSLPRLDL------APEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVE 317
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
I G +V ++GLGR+G +VA++ A G + +R
Sbjct: 153 IHGANVAVLGLGRVGXSVARKFAALGAKVKVGAR 186
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 14 LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
+ V TC+ G D +DL E GI ++ P V D +G LA+
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAM 106
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN 119
G SVG IG G++ A+AK A G +++ A P+
Sbjct: 2 GMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD 38
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEA--------FGCFISYRSRAEKPNTKYK 123
+ G + TK+ G S+GII R+G K A FG +Y +P++ Y
Sbjct: 10 QQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAALDLFGREFGDVATYSQ--HQPDSDYL 67
Query: 124 GALVDESELVSALLEDR------LAAAVLDVFEH 151
G L+ ++ D+ LAA VL FE
Sbjct: 68 GNLLRSKTFIALAAFDQEAVVGALAAYVLPKFEQ 101
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
I G V ++GLGR G +A+ A G + +R+
Sbjct: 155 IHGSQVAVLGLGRTGXTIARTFAALGANVKVGARS 189
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEK-GIQVTNTPDVLTDDVADAAIGLTLA 60
G D L+DSL + + C+ LDKIDL K ++V T D D A+ +
Sbjct: 47 GMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGE 106
Query: 61 VLRR 64
+LR+
Sbjct: 107 LLRK 110
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEK-GIQVTNTPDVLTDDVADAAIGLTLA 60
G D L+DSL + + C+ LDKIDL K ++V T D D A+ +
Sbjct: 47 GMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGE 106
Query: 61 VLRR 64
+LR+
Sbjct: 107 LLRK 110
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN 119
SVG IG G++ A+AK A G +++ A P+
Sbjct: 24 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD 58
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL 126
+ + G+++ I G R IG+A+AKR A G ++ +++ +P+ K G +
Sbjct: 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTI 53
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN 119
SVG IG G++ A+AK A G +++ A P+
Sbjct: 4 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD 38
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 84 RSVGIIGLGRIGMAVAKRAEAFGCFISY 111
R +GIIGLG +G AVA A G Y
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDY 29
>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|B Chain B, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|C Chain C, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
Length = 347
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 77 LTTKISGRSVGIIG---LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGA 125
L ISG+SV I G LG +G+AVAK + A+ +S S + K GA
Sbjct: 161 LAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 212
>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3
Length = 348
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 77 LTTKISGRSVGIIG---LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGA 125
L ISG+SV I G LG +G+AVAK + A+ +S S + K GA
Sbjct: 162 LAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 213
>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|B Chain B, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|C Chain C, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|D Chain D, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
Length = 350
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 77 LTTKISGRSVGIIG---LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGA 125
L I+GRS I G LG +G+AVAK + A+ +S S + K GA
Sbjct: 162 LAGPIAGRSTLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGA 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,548,031
Number of Sequences: 62578
Number of extensions: 209982
Number of successful extensions: 765
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 151
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)