Query 045521
Match_columns 204
No_of_seqs 265 out of 1168
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 3.2E-59 7E-64 399.9 23.5 199 1-199 54-311 (324)
2 PRK15409 bifunctional glyoxyla 100.0 1.6E-58 3.4E-63 396.4 23.4 203 2-204 55-319 (323)
3 COG1052 LdhA Lactate dehydroge 100.0 2.9E-58 6.2E-63 393.8 22.3 204 1-204 54-322 (324)
4 PRK06487 glycerate dehydrogena 100.0 4.4E-57 9.4E-62 387.0 24.6 203 1-204 54-317 (317)
5 PRK13243 glyoxylate reductase; 100.0 4E-57 8.7E-62 389.6 23.2 204 1-204 55-322 (333)
6 PRK08410 2-hydroxyacid dehydro 100.0 1.3E-56 2.9E-61 383.1 24.0 197 1-198 51-311 (311)
7 PRK11790 D-3-phosphoglycerate 100.0 2.9E-56 6.2E-61 393.2 23.6 204 1-204 63-326 (409)
8 PRK06932 glycerate dehydrogena 100.0 6.1E-56 1.3E-60 379.4 23.4 198 1-198 53-314 (314)
9 PLN03139 formate dehydrogenase 100.0 1.4E-55 3.1E-60 384.5 23.0 198 2-199 110-369 (386)
10 PRK07574 formate dehydrogenase 100.0 1.6E-55 3.6E-60 384.3 22.2 201 2-202 103-365 (385)
11 PLN02306 hydroxypyruvate reduc 100.0 5.8E-55 1.3E-59 381.5 23.6 204 1-204 72-354 (386)
12 TIGR01327 PGDH D-3-phosphoglyc 100.0 5.2E-55 1.1E-59 396.1 22.6 204 1-204 50-311 (525)
13 PRK13581 D-3-phosphoglycerate 100.0 1.3E-54 2.8E-59 393.6 22.5 204 1-204 52-312 (526)
14 PLN02928 oxidoreductase family 100.0 5.1E-54 1.1E-58 371.9 24.1 199 2-202 71-343 (347)
15 PRK12480 D-lactate dehydrogena 100.0 4.4E-53 9.6E-58 363.8 21.7 204 1-204 55-330 (330)
16 PRK08605 D-lactate dehydrogena 100.0 1.6E-51 3.4E-56 354.8 21.3 204 1-204 55-332 (332)
17 KOG0068 D-3-phosphoglycerate d 100.0 3.3E-51 7.1E-56 342.8 17.3 202 1-203 57-319 (406)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 9E-51 1.9E-55 345.3 18.9 202 3-204 73-335 (336)
19 PRK15469 ghrA bifunctional gly 100.0 5.3E-50 1.2E-54 342.2 21.7 196 4-204 48-307 (312)
20 PRK15438 erythronate-4-phospha 100.0 9.9E-49 2.1E-53 340.5 22.4 181 1-195 47-279 (378)
21 PRK06436 glycerate dehydrogena 100.0 1.5E-48 3.3E-53 331.8 22.9 189 10-204 46-289 (303)
22 PRK00257 erythronate-4-phospha 100.0 3.7E-48 7.9E-53 337.7 22.8 184 1-198 47-282 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 4.6E-36 1E-40 237.7 7.2 118 55-172 1-178 (178)
24 KOG0067 Transcription factor C 99.9 3.5E-25 7.6E-30 188.1 9.5 190 2-198 84-340 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.8 2.1E-19 4.6E-24 135.6 9.4 53 2-54 49-101 (133)
26 TIGR02853 spore_dpaA dipicolin 99.6 2.2E-15 4.7E-20 127.7 7.7 98 2-117 81-185 (287)
27 PTZ00075 Adenosylhomocysteinas 99.5 2.7E-13 5.8E-18 121.0 11.6 127 18-156 196-368 (476)
28 PRK08306 dipicolinate synthase 99.1 2.3E-10 4.9E-15 97.5 9.7 98 3-117 83-186 (296)
29 PLN02494 adenosylhomocysteinas 98.8 6.7E-09 1.5E-13 92.9 4.4 73 80-153 251-374 (477)
30 TIGR00936 ahcY adenosylhomocys 98.4 2.8E-07 6E-12 81.6 5.5 72 80-151 192-312 (406)
31 PRK13403 ketol-acid reductoiso 98.4 4.6E-07 9.9E-12 77.7 4.8 38 79-116 12-49 (335)
32 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 1.9E-07 4.2E-12 75.2 1.9 92 78-172 23-140 (200)
33 PRK05476 S-adenosyl-L-homocyst 98.2 6.3E-06 1.4E-10 73.5 7.6 91 18-117 154-246 (425)
34 cd01076 NAD_bind_1_Glu_DH NAD( 98.1 9.4E-06 2E-10 66.7 7.7 57 79-142 27-89 (227)
35 cd05313 NAD_bind_2_Glu_DH NAD( 98.1 1.2E-05 2.6E-10 67.0 7.6 105 47-171 14-129 (254)
36 PLN02477 glutamate dehydrogena 97.9 3.2E-05 6.9E-10 68.7 7.5 82 78-170 201-288 (410)
37 PRK14031 glutamate dehydrogena 97.9 5.9E-05 1.3E-09 67.5 8.3 86 78-171 223-318 (444)
38 PF00670 AdoHcyase_NAD: S-aden 97.8 2.6E-05 5.5E-10 60.7 4.6 38 79-116 19-56 (162)
39 PRK09414 glutamate dehydrogena 97.8 0.00018 3.9E-09 64.6 10.6 105 47-171 208-319 (445)
40 PTZ00079 NADP-specific glutama 97.8 8.4E-05 1.8E-09 66.6 8.0 87 78-171 232-328 (454)
41 COG0334 GdhA Glutamate dehydro 97.8 3.6E-05 7.8E-10 67.8 5.0 88 78-170 202-289 (411)
42 cd05211 NAD_bind_Glu_Leu_Phe_V 97.7 6.9E-05 1.5E-09 61.2 5.4 60 79-141 19-79 (217)
43 PRK14030 glutamate dehydrogena 97.7 0.00032 6.9E-09 62.9 9.7 87 78-171 223-319 (445)
44 PRK05479 ketol-acid reductoiso 97.6 7.8E-05 1.7E-09 64.5 4.9 37 79-115 13-49 (330)
45 cd00401 AdoHcyase S-adenosyl-L 97.6 0.0001 2.2E-09 65.6 5.4 38 79-116 198-235 (413)
46 TIGR00465 ilvC ketol-acid redu 97.4 0.00028 6E-09 60.8 5.1 34 81-114 1-34 (314)
47 PLN02712 arogenate dehydrogena 97.3 0.00044 9.6E-09 65.2 5.4 39 78-116 364-402 (667)
48 PRK01710 murD UDP-N-acetylmura 97.2 0.0016 3.4E-08 58.8 8.4 84 79-177 10-93 (458)
49 PF03446 NAD_binding_2: NAD bi 97.2 0.00058 1.3E-08 53.0 4.8 34 84-117 2-35 (163)
50 KOG0023 Alcohol dehydrogenase, 97.1 0.00071 1.5E-08 57.9 4.6 36 82-117 181-216 (360)
51 COG1064 AdhP Zn-dependent alco 97.0 0.0026 5.6E-08 55.2 7.1 37 82-118 166-202 (339)
52 PLN02256 arogenate dehydrogena 96.9 0.0016 3.5E-08 55.8 5.2 37 80-116 33-69 (304)
53 cd05191 NAD_bind_amino_acid_DH 96.9 0.0028 6E-08 43.9 5.5 36 79-114 19-55 (86)
54 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0038 8.2E-08 55.8 7.2 38 80-117 177-215 (417)
55 PF01488 Shikimate_DH: Shikima 96.8 0.0022 4.8E-08 48.3 4.9 38 80-117 9-47 (135)
56 PRK14619 NAD(P)H-dependent gly 96.8 0.0022 4.8E-08 54.8 5.2 36 82-117 3-38 (308)
57 PRK05225 ketol-acid reductoiso 96.8 0.0008 1.7E-08 60.4 2.4 41 70-110 21-63 (487)
58 PF03807 F420_oxidored: NADP o 96.7 0.0023 4.9E-08 44.8 3.9 32 85-116 1-36 (96)
59 PRK04690 murD UDP-N-acetylmura 96.7 0.0098 2.1E-07 53.9 8.9 80 81-177 6-85 (468)
60 PF00208 ELFV_dehydrog: Glutam 96.7 0.002 4.4E-08 53.5 3.9 52 80-138 29-85 (244)
61 TIGR01505 tartro_sem_red 2-hyd 96.6 0.0023 4.9E-08 54.2 4.2 32 85-116 1-32 (291)
62 PF13478 XdhC_C: XdhC Rossmann 96.6 0.0056 1.2E-07 46.4 5.9 32 86-117 1-32 (136)
63 PRK11559 garR tartronate semia 96.6 0.0028 6E-08 53.7 4.6 34 84-117 3-36 (296)
64 TIGR00518 alaDH alanine dehydr 96.6 0.0035 7.6E-08 55.2 5.2 37 80-116 164-200 (370)
65 PRK06719 precorrin-2 dehydroge 96.6 0.0043 9.3E-08 48.1 5.1 42 75-116 5-46 (157)
66 PRK07417 arogenate dehydrogena 96.5 0.0045 9.7E-08 52.2 4.9 33 84-116 1-33 (279)
67 PRK06718 precorrin-2 dehydroge 96.4 0.0061 1.3E-07 49.2 5.3 41 76-116 3-43 (202)
68 PF07991 IlvN: Acetohydroxy ac 96.4 0.0062 1.3E-07 47.4 5.0 37 81-117 2-38 (165)
69 PF13241 NAD_binding_7: Putati 96.4 0.0051 1.1E-07 44.1 4.1 36 80-115 4-39 (103)
70 PRK09599 6-phosphogluconate de 96.4 0.0044 9.6E-08 52.8 4.4 33 84-116 1-33 (301)
71 PRK00045 hemA glutamyl-tRNA re 96.4 0.012 2.5E-07 52.8 7.2 37 80-116 179-216 (423)
72 PRK12490 6-phosphogluconate de 96.4 0.0054 1.2E-07 52.3 4.8 32 85-116 2-33 (299)
73 PLN02712 arogenate dehydrogena 96.4 0.0053 1.1E-07 58.1 5.2 38 79-116 48-85 (667)
74 TIGR01470 cysG_Nterm siroheme 96.3 0.0076 1.6E-07 48.8 5.3 42 76-117 2-43 (205)
75 cd01065 NAD_bind_Shikimate_DH 96.3 0.0095 2.1E-07 45.2 5.5 38 79-116 15-53 (155)
76 PRK11199 tyrA bifunctional cho 96.3 0.02 4.4E-07 50.4 8.3 66 46-116 66-132 (374)
77 PLN02545 3-hydroxybutyryl-CoA 96.3 0.0068 1.5E-07 51.4 4.9 33 84-116 5-37 (295)
78 PRK00421 murC UDP-N-acetylmura 96.2 0.0084 1.8E-07 54.1 5.6 78 80-177 4-82 (461)
79 PRK14106 murD UDP-N-acetylmura 96.1 0.041 8.9E-07 49.2 9.5 37 80-116 2-38 (450)
80 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.015 3.3E-07 46.2 6.0 33 84-116 1-33 (185)
81 PRK06019 phosphoribosylaminoim 96.1 0.017 3.8E-07 50.6 6.9 55 83-137 2-62 (372)
82 TIGR02964 xanthine_xdhC xanthi 96.1 0.021 4.6E-07 47.5 7.0 34 83-116 100-133 (246)
83 cd05213 NAD_bind_Glutamyl_tRNA 96.1 0.0061 1.3E-07 52.3 3.9 58 81-138 176-238 (311)
84 TIGR00872 gnd_rel 6-phosphoglu 96.1 0.0076 1.6E-07 51.4 4.4 34 84-117 1-34 (298)
85 PRK15461 NADH-dependent gamma- 96.1 0.0093 2E-07 50.8 4.8 34 84-117 2-35 (296)
86 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.042 9.2E-07 43.6 7.9 39 78-116 23-62 (194)
87 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.013 2.8E-07 46.4 4.8 33 85-117 1-33 (180)
88 PRK00258 aroE shikimate 5-dehy 96.0 0.015 3.2E-07 49.1 5.5 40 78-117 118-158 (278)
89 PRK07066 3-hydroxybutyryl-CoA 95.9 0.011 2.4E-07 51.1 4.6 33 84-116 8-40 (321)
90 COG0569 TrkA K+ transport syst 95.9 0.0069 1.5E-07 49.7 3.2 52 84-135 1-62 (225)
91 cd01080 NAD_bind_m-THF_DH_Cycl 95.9 0.016 3.5E-07 45.4 5.2 66 79-151 40-118 (168)
92 PRK06545 prephenate dehydrogen 95.9 0.01 2.2E-07 51.9 4.3 33 84-116 1-33 (359)
93 COG0499 SAM1 S-adenosylhomocys 95.9 0.0097 2.1E-07 51.9 3.9 36 80-115 206-241 (420)
94 COG1748 LYS9 Saccharopine dehy 95.9 0.023 5E-07 50.3 6.3 33 84-116 2-35 (389)
95 PRK05472 redox-sensing transcr 95.8 0.035 7.6E-07 44.9 6.8 86 45-142 58-148 (213)
96 PRK04148 hypothetical protein; 95.7 0.043 9.2E-07 41.5 6.6 57 82-153 16-72 (134)
97 PRK08594 enoyl-(acyl carrier p 95.7 0.034 7.4E-07 45.9 6.5 36 80-115 4-42 (257)
98 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.015 3.3E-07 49.7 4.5 33 84-116 3-35 (308)
99 COG0026 PurK Phosphoribosylami 95.7 0.044 9.5E-07 47.9 7.2 36 83-118 1-36 (375)
100 PRK07502 cyclohexadienyl dehyd 95.7 0.022 4.8E-07 48.6 5.3 35 82-116 5-41 (307)
101 PRK06035 3-hydroxyacyl-CoA deh 95.6 0.019 4.2E-07 48.5 4.8 33 84-116 4-36 (291)
102 PRK13302 putative L-aspartate 95.6 0.02 4.3E-07 48.3 4.8 36 81-116 4-42 (271)
103 COG0771 MurD UDP-N-acetylmuram 95.6 0.075 1.6E-06 48.0 8.6 38 81-118 5-42 (448)
104 PRK09260 3-hydroxybutyryl-CoA 95.6 0.019 4E-07 48.6 4.6 33 84-116 2-34 (288)
105 PLN02272 glyceraldehyde-3-phos 95.6 0.018 3.8E-07 51.4 4.5 29 84-112 86-115 (421)
106 COG2085 Predicted dinucleotide 95.6 0.022 4.8E-07 46.1 4.7 33 84-116 2-34 (211)
107 PRK06079 enoyl-(acyl carrier p 95.5 0.038 8.2E-07 45.4 6.1 36 80-115 4-42 (252)
108 PRK06841 short chain dehydroge 95.5 0.045 9.8E-07 44.6 6.4 37 80-116 12-49 (255)
109 PRK08862 short chain dehydroge 95.4 0.038 8.3E-07 44.9 5.9 37 80-116 2-39 (227)
110 PF00070 Pyr_redox: Pyridine n 95.4 0.058 1.3E-06 36.4 5.9 52 85-141 1-55 (80)
111 PRK11064 wecC UDP-N-acetyl-D-m 95.4 0.038 8.3E-07 49.4 6.2 34 84-117 4-37 (415)
112 PRK02472 murD UDP-N-acetylmura 95.4 0.031 6.7E-07 50.0 5.7 37 80-116 2-38 (447)
113 PRK00683 murD UDP-N-acetylmura 95.4 0.029 6.4E-07 49.9 5.4 35 82-116 2-36 (418)
114 PRK09310 aroDE bifunctional 3- 95.4 0.031 6.7E-07 50.9 5.5 39 78-116 327-365 (477)
115 PRK06392 homoserine dehydrogen 95.3 0.033 7.1E-07 48.3 5.3 55 85-141 2-64 (326)
116 PRK08507 prephenate dehydrogen 95.3 0.03 6.4E-07 47.0 5.0 33 84-116 1-35 (275)
117 TIGR02356 adenyl_thiF thiazole 95.3 0.029 6.2E-07 45.2 4.7 37 79-115 17-54 (202)
118 PRK06130 3-hydroxybutyryl-CoA 95.3 0.028 6E-07 47.9 4.8 33 84-116 5-37 (311)
119 PRK15059 tartronate semialdehy 95.3 0.026 5.7E-07 48.0 4.6 32 85-116 2-33 (292)
120 PRK11880 pyrroline-5-carboxyla 95.3 0.029 6.4E-07 46.6 4.8 33 84-116 3-38 (267)
121 PRK07679 pyrroline-5-carboxyla 95.3 0.036 7.8E-07 46.6 5.3 35 82-116 2-40 (279)
122 PRK14194 bifunctional 5,10-met 95.3 0.039 8.6E-07 47.2 5.5 111 78-195 154-287 (301)
123 PRK06523 short chain dehydroge 95.3 0.078 1.7E-06 43.4 7.2 59 78-136 4-68 (260)
124 PRK03369 murD UDP-N-acetylmura 95.2 0.033 7.2E-07 50.7 5.3 36 80-115 9-44 (488)
125 TIGR02354 thiF_fam2 thiamine b 95.2 0.034 7.5E-07 44.7 4.8 37 79-115 17-54 (200)
126 PRK07523 gluconate 5-dehydroge 95.2 0.05 1.1E-06 44.5 5.8 37 80-116 7-44 (255)
127 PF00899 ThiF: ThiF family; I 95.2 0.028 6.1E-07 42.0 3.9 34 82-115 1-35 (135)
128 PRK07530 3-hydroxybutyryl-CoA 95.1 0.036 7.7E-07 46.9 4.9 33 84-116 5-37 (292)
129 PLN02688 pyrroline-5-carboxyla 95.1 0.035 7.6E-07 46.1 4.7 33 84-116 1-38 (266)
130 PRK02006 murD UDP-N-acetylmura 95.1 0.039 8.4E-07 50.3 5.3 37 80-116 4-40 (498)
131 PRK01390 murD UDP-N-acetylmura 95.1 0.038 8.3E-07 49.7 5.2 36 80-115 6-41 (460)
132 PRK08818 prephenate dehydrogen 95.1 0.039 8.4E-07 48.7 5.1 36 81-116 2-39 (370)
133 PRK14618 NAD(P)H-dependent gly 95.1 0.04 8.7E-07 47.4 5.1 34 83-116 4-37 (328)
134 PRK06398 aldose dehydrogenase; 95.0 0.088 1.9E-06 43.3 6.9 58 80-137 3-64 (258)
135 PRK12828 short chain dehydroge 95.0 0.089 1.9E-06 42.1 6.7 58 80-137 4-74 (239)
136 PRK00141 murD UDP-N-acetylmura 95.0 0.043 9.2E-07 49.8 5.3 37 79-115 11-47 (473)
137 PRK08374 homoserine dehydrogen 95.0 0.13 2.7E-06 44.8 7.9 53 84-138 3-65 (336)
138 PLN02948 phosphoribosylaminoim 95.0 0.083 1.8E-06 49.2 7.2 60 79-138 18-83 (577)
139 TIGR01915 npdG NADPH-dependent 95.0 0.043 9.2E-07 44.6 4.7 33 84-116 1-34 (219)
140 PF00044 Gp_dh_N: Glyceraldehy 94.9 0.034 7.4E-07 42.9 3.8 29 85-113 2-31 (151)
141 TIGR01161 purK phosphoribosyla 94.9 0.074 1.6E-06 46.2 6.4 54 85-138 1-60 (352)
142 PRK09496 trkA potassium transp 94.9 0.08 1.7E-06 47.3 6.7 33 84-116 1-33 (453)
143 PRK09424 pntA NAD(P) transhydr 94.9 0.15 3.2E-06 46.8 8.4 37 80-116 162-198 (509)
144 PRK12549 shikimate 5-dehydroge 94.9 0.059 1.3E-06 45.7 5.5 39 79-117 123-162 (284)
145 PRK05808 3-hydroxybutyryl-CoA 94.8 0.037 8.1E-07 46.6 4.2 33 84-116 4-36 (282)
146 PTZ00142 6-phosphogluconate de 94.8 0.041 8.9E-07 50.0 4.7 34 84-117 2-35 (470)
147 COG1023 Gnd Predicted 6-phosph 94.8 0.063 1.4E-06 44.6 5.3 33 84-116 1-33 (300)
148 PLN00203 glutamyl-tRNA reducta 94.8 0.043 9.4E-07 50.4 4.9 37 80-116 263-300 (519)
149 PRK07819 3-hydroxybutyryl-CoA 94.8 0.041 8.8E-07 46.7 4.4 34 84-117 6-39 (286)
150 cd00757 ThiF_MoeB_HesA_family 94.8 0.046 1E-06 44.7 4.5 36 79-114 17-53 (228)
151 PRK07531 bifunctional 3-hydrox 94.8 0.041 8.8E-07 50.3 4.5 33 84-116 5-37 (495)
152 PRK00094 gpsA NAD(P)H-dependen 94.8 0.051 1.1E-06 46.3 4.9 33 84-116 2-34 (325)
153 COG2084 MmsB 3-hydroxyisobutyr 94.7 0.044 9.5E-07 46.6 4.3 35 84-118 1-35 (286)
154 COG0677 WecC UDP-N-acetyl-D-ma 94.7 0.033 7.3E-07 49.2 3.6 63 84-148 10-79 (436)
155 PRK07890 short chain dehydroge 94.7 0.078 1.7E-06 43.2 5.7 36 81-116 3-39 (258)
156 PRK14189 bifunctional 5,10-met 94.7 0.068 1.5E-06 45.4 5.3 104 78-188 153-276 (285)
157 PRK06949 short chain dehydroge 94.7 0.1 2.2E-06 42.5 6.3 38 79-116 5-43 (258)
158 PRK08655 prephenate dehydrogen 94.7 0.051 1.1E-06 48.9 4.9 33 84-116 1-34 (437)
159 PRK08339 short chain dehydroge 94.7 0.11 2.4E-06 43.0 6.6 37 80-116 5-42 (263)
160 PRK05867 short chain dehydroge 94.6 0.086 1.9E-06 43.1 5.8 37 80-116 6-43 (253)
161 PRK08293 3-hydroxybutyryl-CoA 94.6 0.051 1.1E-06 45.9 4.6 33 84-116 4-36 (287)
162 PRK01438 murD UDP-N-acetylmura 94.6 0.067 1.4E-06 48.4 5.6 84 78-177 11-94 (480)
163 PRK06249 2-dehydropantoate 2-r 94.6 0.062 1.3E-06 46.0 5.1 34 83-116 5-38 (313)
164 PRK04308 murD UDP-N-acetylmura 94.6 0.069 1.5E-06 47.8 5.6 82 81-178 3-84 (445)
165 PLN02858 fructose-bisphosphate 94.6 0.042 9.1E-07 56.0 4.4 36 82-117 323-358 (1378)
166 TIGR01142 purT phosphoribosylg 94.5 0.12 2.6E-06 45.2 6.8 60 85-144 1-66 (380)
167 TIGR03026 NDP-sugDHase nucleot 94.5 0.042 9.1E-07 48.9 4.0 34 84-117 1-34 (411)
168 PRK12475 thiamine/molybdopteri 94.5 0.057 1.2E-06 47.0 4.7 37 79-115 20-57 (338)
169 PRK07889 enoyl-(acyl carrier p 94.5 0.089 1.9E-06 43.4 5.6 37 80-116 4-43 (256)
170 PRK12548 shikimate 5-dehydroge 94.5 0.074 1.6E-06 45.2 5.2 38 79-116 122-160 (289)
171 PRK14175 bifunctional 5,10-met 94.5 0.077 1.7E-06 45.1 5.2 102 78-187 153-275 (286)
172 PF10727 Rossmann-like: Rossma 94.5 0.031 6.7E-07 41.8 2.5 36 81-116 8-44 (127)
173 PLN02350 phosphogluconate dehy 94.5 0.042 9.2E-07 50.2 3.9 33 85-117 8-40 (493)
174 TIGR00507 aroE shikimate 5-deh 94.4 0.085 1.8E-06 44.2 5.4 38 80-117 114-151 (270)
175 COG0287 TyrA Prephenate dehydr 94.4 0.062 1.4E-06 45.5 4.6 32 83-114 3-34 (279)
176 PF01262 AlaDh_PNT_C: Alanine 94.4 0.075 1.6E-06 41.4 4.7 37 79-115 16-52 (168)
177 PRK00066 ldh L-lactate dehydro 94.4 0.094 2E-06 45.2 5.7 78 82-172 5-84 (315)
178 PRK08265 short chain dehydroge 94.4 0.13 2.8E-06 42.3 6.4 37 80-116 3-40 (261)
179 PRK06928 pyrroline-5-carboxyla 94.4 0.068 1.5E-06 45.0 4.7 33 84-116 2-38 (277)
180 cd05311 NAD_bind_2_malic_enz N 94.3 0.18 3.9E-06 41.3 7.0 38 78-115 20-60 (226)
181 PRK07831 short chain dehydroge 94.3 0.1 2.3E-06 42.8 5.7 37 80-116 14-52 (262)
182 PRK06522 2-dehydropantoate 2-r 94.3 0.065 1.4E-06 45.2 4.5 33 84-116 1-33 (304)
183 COG0057 GapA Glyceraldehyde-3- 94.3 0.059 1.3E-06 46.5 4.2 31 84-114 2-34 (335)
184 PRK14806 bifunctional cyclohex 94.3 0.061 1.3E-06 51.3 4.7 33 84-116 4-38 (735)
185 PRK07680 late competence prote 94.2 0.082 1.8E-06 44.3 4.9 32 85-116 2-37 (273)
186 PRK06125 short chain dehydroge 94.2 0.18 4E-06 41.2 6.9 37 80-116 4-41 (259)
187 PRK13940 glutamyl-tRNA reducta 94.2 0.22 4.9E-06 44.5 7.8 59 80-138 178-242 (414)
188 PRK12491 pyrroline-5-carboxyla 94.1 0.092 2E-06 44.2 5.0 34 83-116 2-39 (272)
189 PRK07062 short chain dehydroge 94.1 0.14 3E-06 42.1 6.0 38 79-116 4-42 (265)
190 TIGR01381 E1_like_apg7 E1-like 94.1 0.15 3.3E-06 47.9 6.8 71 36-114 296-370 (664)
191 TIGR00873 gnd 6-phosphoglucona 94.1 0.055 1.2E-06 49.1 3.9 33 85-117 1-33 (467)
192 PRK00676 hemA glutamyl-tRNA re 94.1 0.099 2.2E-06 45.5 5.3 38 79-116 170-208 (338)
193 PF13460 NAD_binding_10: NADH( 94.1 0.077 1.7E-06 41.1 4.2 62 86-150 1-69 (183)
194 COG1648 CysG Siroheme synthase 94.1 0.16 3.5E-06 41.3 6.2 41 76-116 5-45 (210)
195 PRK08589 short chain dehydroge 94.1 0.17 3.7E-06 42.0 6.5 36 80-115 3-39 (272)
196 PRK08229 2-dehydropantoate 2-r 94.0 0.074 1.6E-06 45.8 4.4 33 84-116 3-35 (341)
197 PRK06139 short chain dehydroge 94.0 0.13 2.9E-06 44.4 5.9 38 79-116 3-41 (330)
198 PRK06172 short chain dehydroge 94.0 0.16 3.5E-06 41.3 6.1 38 80-117 4-42 (253)
199 PRK08303 short chain dehydroge 94.0 0.34 7.4E-06 41.2 8.3 39 78-116 3-42 (305)
200 KOG2380 Prephenate dehydrogena 93.9 0.078 1.7E-06 46.2 4.2 35 82-116 51-85 (480)
201 PRK07074 short chain dehydroge 93.9 0.14 3.1E-06 41.7 5.7 34 83-116 2-36 (257)
202 PRK07688 thiamine/molybdopteri 93.9 0.087 1.9E-06 45.9 4.6 37 79-115 20-57 (339)
203 PRK01368 murD UDP-N-acetylmura 93.9 0.11 2.3E-06 47.1 5.2 33 82-115 5-37 (454)
204 PRK03803 murD UDP-N-acetylmura 93.9 0.11 2.4E-06 46.6 5.3 35 82-116 5-39 (448)
205 PRK09288 purT phosphoribosylgl 93.9 0.27 5.8E-06 43.2 7.6 62 82-143 11-78 (395)
206 PRK09496 trkA potassium transp 93.9 0.21 4.5E-06 44.6 7.1 36 81-116 229-264 (453)
207 PRK08217 fabG 3-ketoacyl-(acyl 93.9 0.13 2.8E-06 41.6 5.3 37 80-116 2-39 (253)
208 PRK05690 molybdopterin biosynt 93.8 0.11 2.4E-06 43.1 4.9 36 79-114 28-64 (245)
209 KOG1370 S-adenosylhomocysteine 93.8 0.064 1.4E-06 46.0 3.4 34 81-114 212-245 (434)
210 PTZ00431 pyrroline carboxylate 93.8 0.12 2.7E-06 43.0 5.2 35 82-116 2-40 (260)
211 cd01483 E1_enzyme_family Super 93.8 0.12 2.7E-06 38.8 4.7 32 85-116 1-33 (143)
212 PRK06463 fabG 3-ketoacyl-(acyl 93.7 0.31 6.7E-06 39.8 7.4 58 80-137 4-71 (255)
213 PRK05866 short chain dehydroge 93.7 0.17 3.7E-06 42.7 5.9 39 78-116 35-74 (293)
214 PRK15057 UDP-glucose 6-dehydro 93.7 0.16 3.4E-06 45.1 5.9 32 85-117 2-33 (388)
215 COG0373 HemA Glutamyl-tRNA red 93.7 0.11 2.3E-06 46.5 4.8 38 80-117 175-213 (414)
216 TIGR02355 moeB molybdopterin s 93.7 0.32 6.9E-06 40.3 7.4 36 79-114 20-56 (240)
217 PRK06476 pyrroline-5-carboxyla 93.7 0.095 2.1E-06 43.5 4.3 32 85-116 2-36 (258)
218 PRK09242 tropinone reductase; 93.7 0.18 3.8E-06 41.2 5.8 37 80-116 6-43 (257)
219 PRK06197 short chain dehydroge 93.7 0.16 3.5E-06 42.8 5.7 48 67-116 2-50 (306)
220 PRK06171 sorbitol-6-phosphate 93.7 0.33 7.2E-06 39.8 7.4 58 80-137 6-69 (266)
221 PRK14192 bifunctional 5,10-met 93.7 0.14 3.1E-06 43.4 5.3 103 78-187 154-275 (283)
222 PRK08690 enoyl-(acyl carrier p 93.6 0.25 5.4E-06 40.8 6.7 36 80-115 3-41 (261)
223 PRK13301 putative L-aspartate 93.6 0.1 2.3E-06 43.8 4.3 32 84-115 3-38 (267)
224 cd05292 LDH_2 A subgroup of L- 93.6 0.18 3.9E-06 43.2 6.0 33 84-116 1-35 (308)
225 PRK03806 murD UDP-N-acetylmura 93.6 0.15 3.2E-06 45.6 5.6 37 80-116 3-39 (438)
226 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.6 0.11 2.4E-06 47.7 4.8 35 83-117 5-39 (503)
227 PRK08264 short chain dehydroge 93.6 0.23 4.9E-06 40.0 6.3 59 80-138 3-70 (238)
228 TIGR00561 pntA NAD(P) transhyd 93.6 0.56 1.2E-05 43.1 9.3 37 80-116 161-197 (511)
229 PRK05875 short chain dehydroge 93.6 0.18 3.9E-06 41.6 5.8 37 80-116 4-41 (276)
230 PRK07063 short chain dehydroge 93.6 0.21 4.5E-06 40.9 6.1 37 80-116 4-41 (260)
231 PRK08328 hypothetical protein; 93.5 0.12 2.6E-06 42.5 4.5 36 79-114 23-59 (231)
232 PRK08416 7-alpha-hydroxysteroi 93.5 0.27 5.9E-06 40.3 6.7 37 79-115 4-41 (260)
233 PRK06505 enoyl-(acyl carrier p 93.5 0.24 5.1E-06 41.3 6.4 35 81-115 5-42 (271)
234 COG1712 Predicted dinucleotide 93.5 0.097 2.1E-06 43.0 3.7 33 84-116 1-36 (255)
235 PF02558 ApbA: Ketopantoate re 93.5 0.14 3E-06 38.6 4.5 31 86-116 1-31 (151)
236 PF01210 NAD_Gly3P_dh_N: NAD-d 93.5 0.15 3.1E-06 39.3 4.6 32 85-116 1-32 (157)
237 PRK08993 2-deoxy-D-gluconate 3 93.4 0.34 7.3E-06 39.6 7.1 36 80-115 7-43 (253)
238 PRK06997 enoyl-(acyl carrier p 93.4 0.29 6.2E-06 40.4 6.7 35 80-114 3-40 (260)
239 TIGR01809 Shik-DH-AROM shikima 93.4 0.16 3.4E-06 43.0 5.1 38 80-117 122-160 (282)
240 CHL00194 ycf39 Ycf39; Provisio 93.4 0.15 3.3E-06 43.4 5.1 55 84-138 1-64 (317)
241 PRK05872 short chain dehydroge 93.4 0.2 4.4E-06 42.2 5.8 38 79-116 5-43 (296)
242 COG0059 IlvC Ketol-acid reduct 93.4 0.098 2.1E-06 44.8 3.8 35 80-114 15-49 (338)
243 PRK06124 gluconate 5-dehydroge 93.3 0.22 4.8E-06 40.6 5.9 37 80-116 8-45 (256)
244 PRK08268 3-hydroxy-acyl-CoA de 93.3 0.13 2.9E-06 47.2 4.9 34 84-117 8-41 (507)
245 PRK06114 short chain dehydroge 93.3 0.45 9.8E-06 38.8 7.7 37 80-116 5-42 (254)
246 PRK13303 L-aspartate dehydroge 93.3 0.13 2.8E-06 43.2 4.4 28 84-111 2-30 (265)
247 PRK05786 fabG 3-ketoacyl-(acyl 93.2 0.19 4E-06 40.4 5.2 38 80-117 2-40 (238)
248 PRK06603 enoyl-(acyl carrier p 93.2 0.3 6.5E-06 40.3 6.5 37 79-115 4-43 (260)
249 PRK05562 precorrin-2 dehydroge 93.2 0.19 4E-06 41.3 5.1 43 75-117 17-59 (223)
250 PRK07984 enoyl-(acyl carrier p 93.2 0.31 6.6E-06 40.5 6.6 35 81-115 4-41 (262)
251 PRK05993 short chain dehydroge 93.2 0.32 7E-06 40.4 6.7 56 82-137 3-67 (277)
252 PRK06182 short chain dehydroge 93.2 0.35 7.5E-06 40.0 6.9 56 82-137 2-66 (273)
253 PRK07370 enoyl-(acyl carrier p 93.2 0.33 7.1E-06 40.0 6.7 35 80-114 3-40 (258)
254 PRK07577 short chain dehydroge 93.2 0.39 8.5E-06 38.4 7.0 56 82-137 2-61 (234)
255 PRK14982 acyl-ACP reductase; P 93.1 0.18 3.8E-06 44.0 5.1 39 78-116 150-191 (340)
256 PRK08703 short chain dehydroge 93.1 0.19 4.1E-06 40.6 5.1 38 79-116 2-40 (239)
257 PRK07814 short chain dehydroge 93.1 0.24 5.2E-06 40.8 5.8 37 80-116 7-44 (263)
258 PF02254 TrkA_N: TrkA-N domain 93.1 0.18 3.9E-06 36.2 4.5 31 86-116 1-31 (116)
259 PRK08644 thiamine biosynthesis 93.1 0.14 3.1E-06 41.5 4.3 37 79-115 24-61 (212)
260 PLN02858 fructose-bisphosphate 93.1 0.12 2.6E-06 52.8 4.6 36 82-117 3-38 (1378)
261 PLN02520 bifunctional 3-dehydr 93.1 0.18 4E-06 46.5 5.5 37 80-116 376-412 (529)
262 TIGR01832 kduD 2-deoxy-D-gluco 93.0 0.21 4.6E-06 40.4 5.2 37 80-116 2-39 (248)
263 smart00846 Gp_dh_N Glyceraldeh 93.0 0.17 3.6E-06 38.9 4.3 28 85-112 2-30 (149)
264 PRK05565 fabG 3-ketoacyl-(acyl 93.0 0.29 6.2E-06 39.4 6.0 37 80-116 2-40 (247)
265 PRK08277 D-mannonate oxidoredu 93.0 0.28 6E-06 40.6 6.0 38 79-116 6-44 (278)
266 PRK08085 gluconate 5-dehydroge 93.0 0.29 6.3E-06 39.9 6.1 37 80-116 6-43 (254)
267 KOG0409 Predicted dehydrogenas 93.0 0.13 2.8E-06 44.0 3.9 39 80-118 32-70 (327)
268 PRK07326 short chain dehydroge 92.9 0.25 5.5E-06 39.6 5.6 57 81-137 4-74 (237)
269 PRK12921 2-dehydropantoate 2-r 92.9 0.15 3.3E-06 43.0 4.4 31 84-114 1-31 (305)
270 TIGR01546 GAPDH-II_archae glyc 92.9 0.12 2.5E-06 45.0 3.7 29 86-114 1-30 (333)
271 PRK08278 short chain dehydroge 92.9 0.34 7.4E-06 40.2 6.5 38 80-117 3-41 (273)
272 PRK14573 bifunctional D-alanyl 92.9 0.17 3.8E-06 48.9 5.3 75 84-178 5-80 (809)
273 PRK13304 L-aspartate dehydroge 92.9 0.15 3.3E-06 42.7 4.3 33 84-116 2-37 (265)
274 PRK12829 short chain dehydroge 92.9 0.3 6.5E-06 39.8 6.0 59 80-138 8-79 (264)
275 TIGR02622 CDP_4_6_dhtase CDP-g 92.9 0.33 7E-06 41.8 6.4 59 81-139 2-74 (349)
276 COG1893 ApbA Ketopantoate redu 92.8 0.8 1.7E-05 39.3 8.7 80 84-182 1-87 (307)
277 PRK05876 short chain dehydroge 92.8 0.26 5.7E-06 41.1 5.7 37 80-116 3-40 (275)
278 PLN02253 xanthoxin dehydrogena 92.8 0.27 5.9E-06 40.7 5.7 38 79-116 14-52 (280)
279 PRK04207 glyceraldehyde-3-phos 92.8 0.16 3.5E-06 44.3 4.4 29 84-112 2-31 (341)
280 PRK06940 short chain dehydroge 92.8 0.29 6.2E-06 40.8 5.8 33 83-116 2-34 (275)
281 PRK14188 bifunctional 5,10-met 92.7 0.26 5.6E-06 42.2 5.5 39 78-116 153-193 (296)
282 PRK06483 dihydromonapterin red 92.7 0.49 1.1E-05 38.0 7.0 34 83-116 2-36 (236)
283 PRK06935 2-deoxy-D-gluconate 3 92.7 0.4 8.7E-06 39.2 6.6 37 79-115 11-48 (258)
284 PRK07478 short chain dehydroge 92.7 0.31 6.8E-06 39.7 5.9 37 80-116 3-40 (254)
285 PRK07231 fabG 3-ketoacyl-(acyl 92.7 0.22 4.7E-06 40.3 4.9 58 80-137 2-73 (251)
286 TIGR01082 murC UDP-N-acetylmur 92.7 0.2 4.4E-06 45.0 5.1 73 86-178 2-75 (448)
287 PRK12429 3-hydroxybutyrate deh 92.7 0.34 7.3E-06 39.3 6.0 57 81-137 2-73 (258)
288 cd01492 Aos1_SUMO Ubiquitin ac 92.7 0.16 3.5E-06 40.7 4.0 37 79-115 17-54 (197)
289 PRK05708 2-dehydropantoate 2-r 92.7 0.16 3.5E-06 43.3 4.3 32 84-115 3-34 (305)
290 TIGR01087 murD UDP-N-acetylmur 92.6 0.19 4E-06 44.9 4.8 33 85-117 1-33 (433)
291 PRK08159 enoyl-(acyl carrier p 92.6 0.41 8.9E-06 39.9 6.5 37 79-115 6-45 (272)
292 cd01485 E1-1_like Ubiquitin ac 92.6 0.17 3.7E-06 40.6 4.0 37 79-115 15-52 (198)
293 PRK14620 NAD(P)H-dependent gly 92.6 0.2 4.4E-06 42.9 4.8 32 85-116 2-33 (326)
294 PRK07067 sorbitol dehydrogenas 92.6 0.42 9.2E-06 39.0 6.5 58 80-137 3-72 (257)
295 PRK06057 short chain dehydroge 92.5 0.26 5.7E-06 40.2 5.2 58 80-137 4-71 (255)
296 PRK06194 hypothetical protein; 92.5 0.36 7.8E-06 40.1 6.1 58 80-137 3-75 (287)
297 PRK07856 short chain dehydroge 92.5 0.46 1E-05 38.7 6.6 58 80-137 3-67 (252)
298 PRK07060 short chain dehydroge 92.4 0.33 7.1E-06 39.1 5.6 60 79-138 5-74 (245)
299 PRK06153 hypothetical protein; 92.4 0.17 3.6E-06 44.9 4.0 35 80-114 173-208 (393)
300 PRK07576 short chain dehydroge 92.4 0.28 6.2E-06 40.4 5.3 38 79-116 5-43 (264)
301 KOG1209 1-Acyl dihydroxyaceton 92.3 0.37 8E-06 39.6 5.6 37 82-118 6-44 (289)
302 TIGR03366 HpnZ_proposed putati 92.3 0.24 5.3E-06 41.3 4.8 35 82-116 120-155 (280)
303 TIGR03466 HpnA hopanoid-associ 92.3 0.41 8.8E-06 40.3 6.2 55 84-138 1-64 (328)
304 TIGR00715 precor6x_red precorr 92.3 0.66 1.4E-05 38.9 7.3 65 84-150 1-74 (256)
305 cd08230 glucose_DH Glucose deh 92.3 0.25 5.4E-06 42.6 5.0 34 81-114 171-204 (355)
306 PRK12481 2-deoxy-D-gluconate 3 92.2 0.64 1.4E-05 38.0 7.2 37 80-116 5-42 (251)
307 PRK06179 short chain dehydroge 92.2 0.51 1.1E-05 38.8 6.6 57 82-138 3-66 (270)
308 PRK12826 3-ketoacyl-(acyl-carr 92.2 0.3 6.6E-06 39.3 5.1 37 80-116 3-40 (251)
309 TIGR01202 bchC 2-desacetyl-2-h 92.2 0.25 5.4E-06 41.9 4.8 33 82-114 144-177 (308)
310 TIGR03649 ergot_EASG ergot alk 92.1 0.44 9.5E-06 39.7 6.2 53 85-137 1-59 (285)
311 PRK07454 short chain dehydroge 92.1 0.37 8E-06 38.9 5.5 35 82-116 5-40 (241)
312 PRK07109 short chain dehydroge 92.1 0.39 8.5E-06 41.4 5.9 38 79-116 4-42 (334)
313 PRK03562 glutathione-regulated 92.1 0.41 8.8E-06 45.1 6.4 34 83-116 400-433 (621)
314 PRK10669 putative cation:proto 92.1 0.34 7.3E-06 44.9 5.9 33 84-116 418-450 (558)
315 COG1249 Lpd Pyruvate/2-oxoglut 92.0 0.32 7E-06 44.1 5.5 35 84-118 174-208 (454)
316 TIGR01921 DAP-DH diaminopimela 92.0 0.27 6E-06 42.5 4.8 34 83-116 3-38 (324)
317 PRK08628 short chain dehydroge 92.0 0.33 7.2E-06 39.6 5.2 39 79-117 3-42 (258)
318 PRK08936 glucose-1-dehydrogena 92.0 0.67 1.5E-05 37.9 7.1 36 80-115 4-40 (261)
319 PRK07806 short chain dehydroge 92.0 0.34 7.5E-06 39.2 5.3 58 80-137 3-76 (248)
320 PRK07634 pyrroline-5-carboxyla 92.0 0.31 6.7E-06 39.8 5.0 34 82-115 3-40 (245)
321 PRK03659 glutathione-regulated 92.0 0.93 2E-05 42.5 8.7 34 83-116 400-433 (601)
322 cd00755 YgdL_like Family of ac 92.0 0.26 5.7E-06 40.6 4.5 36 79-114 7-43 (231)
323 KOG0022 Alcohol dehydrogenase, 91.9 0.25 5.4E-06 42.6 4.4 35 82-116 192-227 (375)
324 PRK15182 Vi polysaccharide bio 91.9 0.19 4.2E-06 45.0 4.0 32 84-116 7-38 (425)
325 PRK09880 L-idonate 5-dehydroge 91.9 0.27 5.8E-06 42.3 4.7 36 81-116 168-204 (343)
326 PRK09186 flagellin modificatio 91.9 0.33 7.1E-06 39.4 5.0 57 81-137 2-75 (256)
327 PF13738 Pyr_redox_3: Pyridine 91.8 0.39 8.4E-06 37.7 5.2 38 79-116 163-200 (203)
328 PRK05717 oxidoreductase; Valid 91.8 0.36 7.7E-06 39.4 5.2 38 79-116 6-44 (255)
329 PRK07533 enoyl-(acyl carrier p 91.8 0.34 7.3E-06 39.9 5.0 38 79-116 6-46 (258)
330 PRK12744 short chain dehydroge 91.8 0.7 1.5E-05 37.7 6.9 35 80-114 5-40 (257)
331 KOG2250 Glutamate/leucine/phen 91.7 0.26 5.5E-06 44.6 4.4 38 79-116 247-284 (514)
332 PRK12771 putative glutamate sy 91.7 0.32 6.9E-06 45.1 5.3 37 80-116 134-170 (564)
333 PRK05600 thiamine biosynthesis 91.7 0.28 6.1E-06 43.3 4.6 36 79-114 37-73 (370)
334 PRK10637 cysG siroheme synthas 91.7 0.29 6.4E-06 44.3 4.9 42 75-116 4-45 (457)
335 COG4221 Short-chain alcohol de 91.7 0.48 1E-05 39.3 5.7 63 80-152 3-66 (246)
336 PRK08762 molybdopterin biosynt 91.7 0.24 5.3E-06 43.6 4.3 37 79-115 131-168 (376)
337 PRK07097 gluconate 5-dehydroge 91.7 0.51 1.1E-05 38.8 6.0 37 80-116 7-44 (265)
338 PLN02740 Alcohol dehydrogenase 91.7 0.31 6.8E-06 42.6 4.9 34 82-115 198-232 (381)
339 PRK14179 bifunctional 5,10-met 91.6 0.35 7.6E-06 41.1 5.0 109 78-193 153-281 (284)
340 TIGR01214 rmlD dTDP-4-dehydror 91.6 0.54 1.2E-05 39.0 6.2 48 85-139 1-49 (287)
341 PF03435 Saccharop_dh: Sacchar 91.6 0.15 3.2E-06 44.8 2.8 57 86-152 1-59 (386)
342 TIGR02822 adh_fam_2 zinc-bindi 91.6 0.33 7.1E-06 41.6 4.9 35 82-116 165-199 (329)
343 PRK15116 sulfur acceptor prote 91.6 0.33 7E-06 41.0 4.7 36 79-114 26-62 (268)
344 PRK08220 2,3-dihydroxybenzoate 91.6 0.72 1.6E-05 37.3 6.7 60 79-138 4-69 (252)
345 cd05291 HicDH_like L-2-hydroxy 91.5 0.35 7.6E-06 41.3 5.0 34 84-117 1-36 (306)
346 TIGR03201 dearomat_had 6-hydro 91.5 0.33 7.2E-06 41.8 4.9 35 82-116 166-200 (349)
347 PRK07774 short chain dehydroge 91.5 0.44 9.4E-06 38.5 5.4 37 80-116 3-40 (250)
348 PF01113 DapB_N: Dihydrodipico 91.5 0.32 6.9E-06 35.9 4.2 32 85-116 2-36 (124)
349 PRK06914 short chain dehydroge 91.5 0.68 1.5E-05 38.2 6.6 35 82-116 2-37 (280)
350 TIGR03325 BphB_TodD cis-2,3-di 91.5 0.41 8.9E-06 39.3 5.2 36 81-116 3-39 (262)
351 PLN02586 probable cinnamyl alc 91.5 0.39 8.4E-06 41.8 5.3 34 82-115 183-216 (360)
352 PRK05597 molybdopterin biosynt 91.5 0.31 6.7E-06 42.7 4.7 36 79-114 24-60 (355)
353 PRK08324 short chain dehydroge 91.4 0.44 9.5E-06 45.2 6.0 39 78-116 417-456 (681)
354 TIGR01532 E4PD_g-proteo D-eryt 91.4 0.25 5.5E-06 42.8 4.0 28 85-112 1-32 (325)
355 TIGR02818 adh_III_F_hyde S-(hy 91.4 0.36 7.7E-06 42.0 5.0 34 82-115 185-219 (368)
356 TIGR01692 HIBADH 3-hydroxyisob 91.4 0.17 3.7E-06 42.7 2.9 30 88-117 1-30 (288)
357 PLN03209 translocon at the inn 91.4 0.47 1E-05 44.2 5.9 36 81-116 78-114 (576)
358 PRK03815 murD UDP-N-acetylmura 91.4 0.38 8.2E-06 42.8 5.2 30 85-115 2-31 (401)
359 PRK06180 short chain dehydroge 91.3 0.29 6.3E-06 40.6 4.2 56 82-137 3-70 (277)
360 PRK06550 fabG 3-ketoacyl-(acyl 91.3 0.43 9.4E-06 38.2 5.1 38 80-117 2-40 (235)
361 KOG0455 Homoserine dehydrogena 91.3 0.38 8.2E-06 40.3 4.7 93 83-175 3-124 (364)
362 PRK06500 short chain dehydroge 91.3 0.46 1E-05 38.3 5.3 37 80-116 3-40 (249)
363 COG0540 PyrB Aspartate carbamo 91.3 1.1 2.4E-05 38.5 7.6 86 12-115 103-193 (316)
364 PRK06138 short chain dehydroge 91.3 0.45 9.7E-06 38.5 5.2 58 80-137 2-73 (252)
365 PRK12939 short chain dehydroge 91.3 0.51 1.1E-05 38.0 5.5 58 80-137 4-76 (250)
366 PRK06113 7-alpha-hydroxysteroi 91.2 0.61 1.3E-05 38.0 6.0 37 80-116 8-45 (255)
367 cd08239 THR_DH_like L-threonin 91.2 0.37 8E-06 41.1 4.8 34 82-115 163-197 (339)
368 COG0345 ProC Pyrroline-5-carbo 91.2 0.39 8.4E-06 40.5 4.8 34 84-117 2-39 (266)
369 PRK12748 3-ketoacyl-(acyl-carr 91.2 0.4 8.6E-06 39.2 4.8 36 80-115 2-40 (256)
370 PRK08223 hypothetical protein; 91.2 0.32 7E-06 41.4 4.3 36 79-114 23-59 (287)
371 PRK06701 short chain dehydroge 91.1 0.93 2E-05 38.1 7.1 38 79-116 42-80 (290)
372 PRK10792 bifunctional 5,10-met 91.1 0.47 1E-05 40.4 5.2 106 78-191 154-280 (285)
373 PTZ00117 malate dehydrogenase; 91.1 0.47 1E-05 40.9 5.4 36 81-116 3-39 (319)
374 PRK12742 oxidoreductase; Provi 91.0 0.53 1.1E-05 37.7 5.4 59 80-138 3-72 (237)
375 cd05188 MDR Medium chain reduc 91.0 0.5 1.1E-05 38.2 5.3 36 81-116 133-168 (271)
376 PRK05854 short chain dehydroge 91.0 0.59 1.3E-05 39.8 5.9 38 79-116 10-48 (313)
377 TIGR03589 PseB UDP-N-acetylglu 91.0 0.72 1.6E-05 39.5 6.4 57 81-137 2-73 (324)
378 PRK08415 enoyl-(acyl carrier p 91.0 0.43 9.3E-06 39.9 4.9 35 81-115 3-40 (274)
379 PRK06111 acetyl-CoA carboxylas 90.9 0.8 1.7E-05 41.0 6.9 59 84-142 3-76 (450)
380 PRK07985 oxidoreductase; Provi 90.9 0.99 2.1E-05 38.0 7.1 36 80-115 46-82 (294)
381 PRK08251 short chain dehydroge 90.9 0.79 1.7E-05 37.0 6.4 34 83-116 2-36 (248)
382 PRK12859 3-ketoacyl-(acyl-carr 90.9 0.46 1E-05 38.9 5.0 35 80-114 3-40 (256)
383 PRK12749 quinate/shikimate deh 90.9 0.53 1.2E-05 40.0 5.5 39 78-116 119-158 (288)
384 PRK12936 3-ketoacyl-(acyl-carr 90.9 0.68 1.5E-05 37.2 5.9 37 80-116 3-40 (245)
385 cd08301 alcohol_DH_plants Plan 90.9 0.44 9.5E-06 41.3 5.1 35 82-116 187-222 (369)
386 PRK07677 short chain dehydroge 90.9 0.78 1.7E-05 37.3 6.3 34 83-116 1-35 (252)
387 PRK09072 short chain dehydroge 90.8 0.51 1.1E-05 38.7 5.2 37 80-116 2-39 (263)
388 PRK14176 bifunctional 5,10-met 90.8 0.54 1.2E-05 40.1 5.3 38 78-115 159-197 (287)
389 PLN00141 Tic62-NAD(P)-related 90.8 0.46 1E-05 38.9 4.9 58 79-136 13-82 (251)
390 PRK08261 fabG 3-ketoacyl-(acyl 90.8 0.93 2E-05 40.5 7.2 37 79-115 206-243 (450)
391 PRK12823 benD 1,6-dihydroxycyc 90.8 0.54 1.2E-05 38.3 5.3 37 80-116 5-42 (260)
392 PRK07825 short chain dehydroge 90.8 0.52 1.1E-05 38.8 5.2 37 80-116 2-39 (273)
393 COG2072 TrkA Predicted flavopr 90.7 0.43 9.4E-06 43.0 5.0 40 78-117 170-209 (443)
394 COG0281 SfcA Malic enzyme [Ene 90.7 1 2.3E-05 40.2 7.2 67 34-115 165-234 (432)
395 PLN02427 UDP-apiose/xylose syn 90.7 0.65 1.4E-05 40.6 6.0 39 78-116 9-49 (386)
396 PRK07792 fabG 3-ketoacyl-(acyl 90.6 1 2.2E-05 38.2 6.9 38 78-115 7-45 (306)
397 PRK07904 short chain dehydroge 90.6 1.2 2.6E-05 36.6 7.2 36 82-117 7-44 (253)
398 PRK08063 enoyl-(acyl carrier p 90.6 0.67 1.4E-05 37.4 5.6 58 81-138 2-75 (250)
399 PRK06128 oxidoreductase; Provi 90.6 0.88 1.9E-05 38.3 6.5 36 80-115 52-88 (300)
400 PLN02657 3,8-divinyl protochlo 90.6 0.83 1.8E-05 40.3 6.6 61 78-138 55-132 (390)
401 cd08300 alcohol_DH_class_III c 90.6 0.47 1E-05 41.2 5.0 34 82-115 186-220 (368)
402 PLN02353 probable UDP-glucose 90.5 0.75 1.6E-05 41.9 6.3 33 84-116 2-36 (473)
403 PRK02705 murD UDP-N-acetylmura 90.5 0.47 1E-05 42.6 5.1 82 85-177 2-84 (459)
404 KOG1207 Diacetyl reductase/L-x 90.5 0.24 5.3E-06 39.4 2.8 60 79-138 3-74 (245)
405 PRK12367 short chain dehydroge 90.5 0.54 1.2E-05 38.7 5.1 38 79-116 10-48 (245)
406 PRK08213 gluconate 5-dehydroge 90.5 0.6 1.3E-05 38.1 5.3 38 79-116 8-46 (259)
407 PRK08945 putative oxoacyl-(acy 90.5 0.54 1.2E-05 38.1 5.0 38 79-116 8-46 (247)
408 PLN02662 cinnamyl-alcohol dehy 90.4 0.5 1.1E-05 39.8 4.9 35 82-116 3-38 (322)
409 TIGR00514 accC acetyl-CoA carb 90.4 0.86 1.9E-05 41.0 6.7 31 84-114 3-33 (449)
410 PLN02178 cinnamyl-alcohol dehy 90.4 0.52 1.1E-05 41.3 5.1 34 82-115 178-211 (375)
411 PRK05579 bifunctional phosphop 90.4 1.2 2.7E-05 39.6 7.5 60 79-138 184-263 (399)
412 PRK05653 fabG 3-ketoacyl-(acyl 90.4 0.53 1.2E-05 37.6 4.8 38 80-117 2-40 (246)
413 PRK08017 oxidoreductase; Provi 90.4 0.53 1.1E-05 38.2 4.9 53 84-136 3-64 (256)
414 PLN02695 GDP-D-mannose-3',5'-e 90.4 0.97 2.1E-05 39.5 6.8 56 82-137 20-84 (370)
415 TIGR03451 mycoS_dep_FDH mycoth 90.4 0.43 9.4E-06 41.2 4.5 34 82-115 176-210 (358)
416 PTZ00082 L-lactate dehydrogena 90.3 0.61 1.3E-05 40.3 5.4 37 81-117 4-41 (321)
417 PRK06196 oxidoreductase; Provi 90.3 0.59 1.3E-05 39.7 5.2 38 79-116 22-60 (315)
418 PRK14027 quinate/shikimate deh 90.3 0.62 1.4E-05 39.5 5.3 38 80-117 124-162 (283)
419 PRK12384 sorbitol-6-phosphate 90.3 0.93 2E-05 36.9 6.2 34 83-116 2-36 (259)
420 PRK08267 short chain dehydroge 90.2 0.67 1.5E-05 37.8 5.4 54 84-137 2-68 (260)
421 PRK06200 2,3-dihydroxy-2,3-dih 90.2 0.63 1.4E-05 38.1 5.2 36 81-116 4-40 (263)
422 TIGR03206 benzo_BadH 2-hydroxy 90.1 0.67 1.4E-05 37.4 5.3 36 81-116 1-37 (250)
423 cd01487 E1_ThiF_like E1_ThiF_l 90.1 0.44 9.6E-06 37.4 4.0 31 85-115 1-32 (174)
424 PRK06223 malate dehydrogenase; 90.1 0.58 1.2E-05 39.8 5.1 33 84-116 3-36 (307)
425 TIGR03736 PRTRC_ThiF PRTRC sys 90.1 0.61 1.3E-05 38.8 5.0 34 82-115 10-54 (244)
426 TIGR01472 gmd GDP-mannose 4,6- 90.1 1.1 2.3E-05 38.5 6.7 55 84-138 1-76 (343)
427 PRK13394 3-hydroxybutyrate deh 90.1 0.67 1.5E-05 37.6 5.3 37 80-116 4-41 (262)
428 PRK07411 hypothetical protein; 90.1 0.45 9.8E-06 42.2 4.5 36 79-114 34-70 (390)
429 PF01118 Semialdhyde_dh: Semia 90.0 0.49 1.1E-05 34.6 4.0 32 85-116 1-35 (121)
430 PLN03154 putative allyl alcoho 90.0 0.62 1.3E-05 40.3 5.2 35 82-116 158-193 (348)
431 cd08281 liver_ADH_like1 Zinc-d 89.9 0.54 1.2E-05 40.9 4.8 35 82-116 191-226 (371)
432 cd08277 liver_alcohol_DH_like 89.9 0.63 1.4E-05 40.4 5.2 35 81-115 183-218 (365)
433 PRK07791 short chain dehydroge 89.9 1.1 2.4E-05 37.5 6.5 37 80-116 3-40 (286)
434 PRK09987 dTDP-4-dehydrorhamnos 89.9 0.98 2.1E-05 38.1 6.3 51 84-138 1-52 (299)
435 cd08245 CAD Cinnamyl alcohol d 89.9 0.66 1.4E-05 39.2 5.2 36 81-116 161-196 (330)
436 PRK07878 molybdopterin biosynt 89.8 0.48 1E-05 42.1 4.4 36 79-114 38-74 (392)
437 PRK08177 short chain dehydroge 89.8 0.69 1.5E-05 37.0 5.0 34 84-117 2-36 (225)
438 PRK06198 short chain dehydroge 89.8 0.67 1.5E-05 37.7 5.0 37 80-116 3-41 (260)
439 PRK08289 glyceraldehyde-3-phos 89.8 0.99 2.2E-05 40.9 6.3 32 81-112 125-161 (477)
440 PLN02240 UDP-glucose 4-epimera 89.7 0.78 1.7E-05 39.2 5.6 59 80-138 2-79 (352)
441 PTZ00058 glutathione reductase 89.7 0.79 1.7E-05 42.7 5.9 35 83-117 237-271 (561)
442 PF01408 GFO_IDH_MocA: Oxidore 89.6 0.63 1.4E-05 33.4 4.3 32 85-116 2-36 (120)
443 PRK08226 short chain dehydroge 89.6 0.77 1.7E-05 37.5 5.3 37 80-116 3-40 (263)
444 cd08295 double_bond_reductase_ 89.6 0.68 1.5E-05 39.5 5.1 35 82-116 151-186 (338)
445 COG2910 Putative NADH-flavin r 89.6 1.8 3.8E-05 34.8 6.9 35 84-118 1-36 (211)
446 PRK08340 glucose-1-dehydrogena 89.6 0.8 1.7E-05 37.4 5.3 33 84-116 1-34 (259)
447 cd08296 CAD_like Cinnamyl alco 89.5 0.71 1.5E-05 39.3 5.2 35 82-116 163-197 (333)
448 PLN02896 cinnamyl-alcohol dehy 89.5 0.75 1.6E-05 39.6 5.3 39 78-116 5-44 (353)
449 PRK06270 homoserine dehydrogen 89.4 0.51 1.1E-05 41.1 4.2 29 84-112 3-41 (341)
450 cd08231 MDR_TM0436_like Hypoth 89.4 0.67 1.5E-05 39.9 5.0 34 82-115 177-211 (361)
451 PLN02358 glyceraldehyde-3-phos 89.4 0.57 1.2E-05 40.8 4.5 29 84-112 6-35 (338)
452 PLN02572 UDP-sulfoquinovose sy 89.4 1.6 3.5E-05 39.2 7.5 37 78-114 42-79 (442)
453 PRK07035 short chain dehydroge 89.3 0.84 1.8E-05 37.0 5.3 37 80-116 5-42 (252)
454 PRK08643 acetoin reductase; Va 89.3 1 2.2E-05 36.6 5.8 34 83-116 2-36 (256)
455 cd05283 CAD1 Cinnamyl alcohol 89.3 0.75 1.6E-05 39.2 5.1 35 82-116 169-203 (337)
456 PRK07201 short chain dehydroge 89.2 0.81 1.8E-05 42.8 5.7 37 80-116 368-405 (657)
457 PF00056 Ldh_1_N: lactate/mala 89.2 0.83 1.8E-05 34.5 4.7 77 84-172 1-80 (141)
458 cd08242 MDR_like Medium chain 89.1 0.84 1.8E-05 38.4 5.3 35 81-115 154-188 (319)
459 PLN02653 GDP-mannose 4,6-dehyd 89.1 0.74 1.6E-05 39.4 5.0 37 80-116 3-40 (340)
460 COG0075 Serine-pyruvate aminot 89.1 2 4.3E-05 38.1 7.6 49 82-137 79-127 (383)
461 PRK07236 hypothetical protein; 89.0 1.5 3.3E-05 38.3 7.0 57 81-138 4-61 (386)
462 COG0362 Gnd 6-phosphogluconate 88.9 0.3 6.6E-06 43.3 2.4 35 83-117 3-37 (473)
463 cd08255 2-desacetyl-2-hydroxye 88.9 0.74 1.6E-05 37.8 4.7 34 82-115 97-131 (277)
464 PTZ00434 cytosolic glyceraldeh 88.9 0.61 1.3E-05 40.9 4.3 30 84-113 4-38 (361)
465 PRK12827 short chain dehydroge 88.9 1.3 2.7E-05 35.6 6.0 36 80-115 3-39 (249)
466 PRK12862 malic enzyme; Reviewe 88.9 2.2 4.8E-05 41.2 8.4 65 36-115 161-228 (763)
467 PRK05586 biotin carboxylase; V 88.8 1.3 2.7E-05 39.9 6.4 29 84-112 3-31 (447)
468 PRK00048 dihydrodipicolinate r 88.8 0.87 1.9E-05 37.9 5.1 33 84-116 2-37 (257)
469 PF01494 FAD_binding_3: FAD bi 88.8 1.5 3.2E-05 37.0 6.6 47 85-131 3-49 (356)
470 PLN02514 cinnamyl-alcohol dehy 88.8 0.76 1.6E-05 39.8 4.9 35 81-115 179-213 (357)
471 cd05312 NAD_bind_1_malic_enz N 88.7 2 4.3E-05 36.5 7.1 54 50-115 4-68 (279)
472 PRK04663 murD UDP-N-acetylmura 88.7 0.88 1.9E-05 40.8 5.4 79 81-178 4-85 (438)
473 PRK07232 bifunctional malic en 88.7 2.1 4.6E-05 41.2 8.1 66 35-115 152-220 (752)
474 PF02882 THF_DHG_CYH_C: Tetrah 88.6 1.2 2.7E-05 34.6 5.4 39 78-116 31-70 (160)
475 PRK10309 galactitol-1-phosphat 88.6 0.77 1.7E-05 39.3 4.8 34 82-115 160-194 (347)
476 PLN02780 ketoreductase/ oxidor 88.6 1 2.2E-05 38.6 5.5 36 81-116 51-87 (320)
477 PRK12861 malic enzyme; Reviewe 88.6 1.7 3.8E-05 41.9 7.4 65 36-115 157-224 (764)
478 PF00185 OTCace: Aspartate/orn 88.5 1 2.3E-05 34.7 5.0 35 82-116 1-37 (158)
479 PRK10675 UDP-galactose-4-epime 88.5 1.8 4E-05 36.7 7.0 58 84-141 1-74 (338)
480 KOG1201 Hydroxysteroid 17-beta 88.4 1.9 4.2E-05 36.8 6.9 66 78-153 33-100 (300)
481 PRK07024 short chain dehydroge 88.4 0.86 1.9E-05 37.2 4.7 34 83-116 2-36 (257)
482 PRK07251 pyridine nucleotide-d 88.4 0.87 1.9E-05 40.6 5.1 36 82-117 156-191 (438)
483 cd08237 ribitol-5-phosphate_DH 88.4 0.72 1.6E-05 39.7 4.4 35 82-116 163-199 (341)
484 TIGR00521 coaBC_dfp phosphopan 88.4 2.1 4.7E-05 38.0 7.5 59 79-137 181-259 (390)
485 KOG0024 Sorbitol dehydrogenase 88.3 0.81 1.8E-05 39.6 4.5 33 82-114 169-202 (354)
486 PRK12769 putative oxidoreducta 88.2 0.94 2E-05 42.8 5.4 37 81-117 325-361 (654)
487 PRK06720 hypothetical protein; 88.1 1.1 2.5E-05 34.8 5.0 37 80-116 13-50 (169)
488 COG0027 PurT Formate-dependent 88.1 1.3 2.8E-05 38.3 5.6 57 82-138 11-73 (394)
489 PRK07102 short chain dehydroge 88.1 1.5 3.2E-05 35.4 6.0 33 84-116 2-35 (243)
490 PRK06141 ornithine cyclodeamin 88.1 0.94 2E-05 38.9 5.0 38 81-118 123-162 (314)
491 cd08234 threonine_DH_like L-th 88.1 0.98 2.1E-05 38.2 5.1 35 81-115 158-193 (334)
492 PRK12833 acetyl-CoA carboxylas 88.1 2 4.3E-05 39.0 7.2 59 84-142 6-79 (467)
493 PRK06300 enoyl-(acyl carrier p 88.1 1.1 2.3E-05 38.3 5.2 36 78-113 3-41 (299)
494 PRK07666 fabG 3-ketoacyl-(acyl 88.0 1.3 2.8E-05 35.6 5.5 37 80-116 4-41 (239)
495 PRK07424 bifunctional sterol d 88.0 0.97 2.1E-05 40.4 5.1 37 80-116 175-212 (406)
496 PLN03096 glyceraldehyde-3-phos 87.9 0.77 1.7E-05 40.9 4.3 27 84-110 61-90 (395)
497 TIGR02415 23BDH acetoin reduct 87.9 0.66 1.4E-05 37.6 3.7 54 84-137 1-69 (254)
498 TIGR02825 B4_12hDH leukotriene 87.9 1 2.2E-05 38.1 5.1 34 82-115 138-172 (325)
499 PRK07775 short chain dehydroge 87.8 1.7 3.6E-05 36.0 6.2 36 81-116 8-44 (274)
500 cd08269 Zn_ADH9 Alcohol dehydr 87.8 1.1 2.3E-05 37.4 5.0 34 82-115 129-163 (312)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-59 Score=399.91 Aligned_cols=199 Identities=37% Similarity=0.548 Sum_probs=184.6
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
|++++++++.+|+||+|++.++|+|+||+++++++||.|+|+|+.++.+||||++++||++.|+ .+++|.|.+.
T Consensus 54 ~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~ 133 (324)
T COG0111 54 TPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK 133 (324)
T ss_pred CCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 5688999963
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-CC---CC---------------------------
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-TK---YK--------------------------- 123 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~~---~~--------------------------- 123 (204)
...+.+|+||||||||+|+||+++|+++++|||+|++||++..+. .. +.
T Consensus 134 ~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 134 AFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred ccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 344679999999999999999999999999999999999954331 11 00
Q ss_pred ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHHHH
Q 045521 124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKA 181 (204)
Q Consensus 124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~~~ 181 (204)
|++||++||++||++|+|+||+||||++||++++ |||++|||++|||+|+.|.|++.+
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~ 293 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER 293 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence 9999999999999999999999999999999886 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 045521 182 TADIVIENLEACFLNKPL 199 (204)
Q Consensus 182 ~~~~~~~nl~~~~~g~~~ 199 (204)
+..++++|+.+|++|+++
T Consensus 294 ~~~~~~~~i~~~l~g~~~ 311 (324)
T COG0111 294 VAEIVAENIVRYLAGGPV 311 (324)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 999999999999999984
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.6e-58 Score=396.43 Aligned_cols=203 Identities=37% Similarity=0.559 Sum_probs=186.3
Q ss_pred CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC-
Q 045521 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG- 74 (204)
Q Consensus 2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~- 74 (204)
++++++++++|+||+|++.|+|+|+||+++|+++||+|+|+||+++++||||++++||+++|+ .+++|.|...
T Consensus 55 ~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~ 134 (323)
T PRK15409 55 KVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASI 134 (323)
T ss_pred CCCHHHHhhCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccC
Confidence 689999999999999999999999999999999999999999999999999999999999999 5788999731
Q ss_pred --CccccccCCCEEEEEeCChHHHHHHHHHh-hcCCEEEEEcCCCCCCC------CCC----------------------
Q 045521 75 --YKLTTKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRSRAEKPNT------KYK---------------------- 123 (204)
Q Consensus 75 --~~~~~~l~g~tvGIvG~G~IG~~va~~~~-~fg~~V~~~~r~~~~~~------~~~---------------------- 123 (204)
...+.+|+||||||||+|+||+++|++++ +|||+|+|++|+..+.. .+.
T Consensus 135 ~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T 214 (323)
T PRK15409 135 GPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDET 214 (323)
T ss_pred ccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHH
Confidence 12477999999999999999999999998 99999999998743211 010
Q ss_pred -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521 124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR 179 (204)
Q Consensus 124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~ 179 (204)
|++|||+||++||++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+++
T Consensus 215 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 215 HHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR 294 (323)
T ss_pred hhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHH
Confidence 9999999999999999999999999999998754 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 180 KATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 180 ~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
.++.+.+++|+.+|++|+++.+.||
T Consensus 295 ~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 295 YNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccC
Confidence 9999999999999999999999886
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.9e-58 Score=393.82 Aligned_cols=204 Identities=47% Similarity=0.692 Sum_probs=187.7
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
+++++++++++|+||+|++.|+||||||+++|+++||.|+|+|++++++||||++++||++.|+ .+++|.|...
T Consensus 54 ~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~ 133 (324)
T COG1052 54 DRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLS 133 (324)
T ss_pred CCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999 5788999852
Q ss_pred ----CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC------CCC---------------------
Q 045521 75 ----YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT------KYK--------------------- 123 (204)
Q Consensus 75 ----~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~~~--------------------- 123 (204)
...+.+++|||+||+|+|+||+++|+++++|||+|+||+|++++.. .|.
T Consensus 134 ~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~ 213 (324)
T COG1052 134 GGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPE 213 (324)
T ss_pred CCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChH
Confidence 2457899999999999999999999999999999999999874211 111
Q ss_pred ------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC-CCCcCCCCc---eEEcccCCCCc
Q 045521 124 ------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV-PEELFGLEN---VVLLPHAASGT 175 (204)
Q Consensus 124 ------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~l~~~~n---vilTPH~a~~t 175 (204)
|++||++||++||++|+|+||+||||+.||.+ ++||++++| |++|||+|+.|
T Consensus 214 T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at 293 (324)
T COG1052 214 TRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASAT 293 (324)
T ss_pred HhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEcccccccc
Confidence 99999999999999999999999999999986 568887777 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 176 EETRKATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 176 ~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
.+++.+|.+.+++|+.+|++|+++.++|+
T Consensus 294 ~ea~~~m~~~~~~nl~~~~~g~~~~~~v~ 322 (324)
T COG1052 294 EEARKAMAELALENLEAFFDGGVPPNEVN 322 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999999999885
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-57 Score=387.00 Aligned_cols=203 Identities=32% Similarity=0.492 Sum_probs=182.5
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
+++++++++++|+||||+++|+|+|++|+++++++||.|+|+||+++.+||||++++||++.|+ .+++|.|.+.
T Consensus 54 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~ 133 (317)
T PRK06487 54 VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQS 133 (317)
T ss_pred CCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 4678999741
Q ss_pred C------ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-CCC------------------------
Q 045521 75 Y------KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-KYK------------------------ 123 (204)
Q Consensus 75 ~------~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~~~------------------------ 123 (204)
. ..+.+|+||||||||+|+||+++|+++++|||+|++|+|+.++.. .+.
T Consensus 134 ~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~ 213 (317)
T PRK06487 134 SQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRH 213 (317)
T ss_pred cccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhc
Confidence 1 124689999999999999999999999999999999998643210 000
Q ss_pred ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCC--CCceEEcccCCCCcHHHH
Q 045521 124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFG--LENVVLLPHAASGTEETR 179 (204)
Q Consensus 124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~--~~nvilTPH~a~~t~~~~ 179 (204)
|++|||+||++||++|+|+||+||||++||++.+ |||+ +|||++|||+|+.|.++.
T Consensus 214 li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~ 293 (317)
T PRK06487 214 LIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREAR 293 (317)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHH
Confidence 9999999999999999999999999999998864 8995 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 180 KATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 180 ~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
.++.+.+++||.+|++|+++ +.||
T Consensus 294 ~~~~~~~~~ni~~~~~g~~~-~~v~ 317 (317)
T PRK06487 294 QRIVGQLAENARAFFAGKPL-RVVS 317 (317)
T ss_pred HHHHHHHHHHHHHHHcCCCC-cCCC
Confidence 99999999999999999864 5554
No 5
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=4e-57 Score=389.56 Aligned_cols=204 Identities=48% Similarity=0.662 Sum_probs=187.3
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
+++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+ .+++|.|.+.
T Consensus 55 ~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~ 134 (333)
T PRK13243 55 ERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRR 134 (333)
T ss_pred CCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc
Confidence 3689999999999999999999999999999999999999999999999999999999999999 4678999741
Q ss_pred -------CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC------CCC------------------
Q 045521 75 -------YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT------KYK------------------ 123 (204)
Q Consensus 75 -------~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~~~------------------ 123 (204)
...+.+|+||||||||+|+||+.+|+++++|||+|++|+|+.++.. .+.
T Consensus 135 ~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 135 GVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPL 214 (333)
T ss_pred ccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCC
Confidence 1146799999999999999999999999999999999998754310 000
Q ss_pred ---------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcH
Q 045521 124 ---------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTE 176 (204)
Q Consensus 124 ---------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~ 176 (204)
|++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|+.|.
T Consensus 215 t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~ 294 (333)
T PRK13243 215 TKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATF 294 (333)
T ss_pred ChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHH
Confidence 99999999999999999999999999999998779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 177 ETRKATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 177 ~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
++..++.+.+++|+.+|++|+++.|.||
T Consensus 295 e~~~~~~~~~~~ni~~~~~g~~~~~~v~ 322 (333)
T PRK13243 295 EAREGMAELVAENLIAFKRGEVPPTLVN 322 (333)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 9999999999999999999999999886
No 6
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-56 Score=383.07 Aligned_cols=197 Identities=35% Similarity=0.556 Sum_probs=178.7
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM- 73 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~- 73 (204)
+++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+ .+++|.|.+
T Consensus 51 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~ 130 (311)
T PRK08410 51 VVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSES 130 (311)
T ss_pred CCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 578899974
Q ss_pred C-C----ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-CCCC------------------------
Q 045521 74 G-Y----KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-TKYK------------------------ 123 (204)
Q Consensus 74 ~-~----~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~~~~------------------------ 123 (204)
. . ..+.+|+||||||||+|+||+++|+++++|||+|++|+|+.... ..+.
T Consensus 131 ~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T 210 (311)
T PRK08410 131 PIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKT 210 (311)
T ss_pred CCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchh
Confidence 1 1 12468999999999999999999999999999999999865321 1110
Q ss_pred -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCC---CceEEcccCCCCcH
Q 045521 124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGL---ENVVLLPHAASGTE 176 (204)
Q Consensus 124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~---~nvilTPH~a~~t~ 176 (204)
|++|||+||++||++|+|+ |+||||++||++++ |||++ |||++|||+|+.|.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~ 289 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASK 289 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCH
Confidence 9999999999999999999 99999999998765 89986 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 045521 177 ETRKATADIVIENLEACFLNKP 198 (204)
Q Consensus 177 ~~~~~~~~~~~~nl~~~~~g~~ 198 (204)
++..++.+.+++|+.+|++|++
T Consensus 290 e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 290 EARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999863
No 7
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-56 Score=393.22 Aligned_cols=204 Identities=28% Similarity=0.396 Sum_probs=186.9
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
+++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+ .+++|.|.+.
T Consensus 63 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~ 142 (409)
T PRK11790 63 TQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS 142 (409)
T ss_pred CCCCHHHHhhCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc
Confidence 3689999999999999999999999999999999999999999999999999999999999999 4678999853
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------CCC------------------------
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-------KYK------------------------ 123 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~~~------------------------ 123 (204)
...+.+|+||||||||+|+||+++|+++++|||+|++|+++..... ++.
T Consensus 143 ~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~ 222 (409)
T PRK11790 143 AAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG 222 (409)
T ss_pred ccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC
Confidence 2346899999999999999999999999999999999998643211 000
Q ss_pred ------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCcCCCCceEEcccCCCCcHHHHH
Q 045521 124 ------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVP-----EELFGLENVVLLPHAASGTEETRK 180 (204)
Q Consensus 124 ------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~l~~~~nvilTPH~a~~t~~~~~ 180 (204)
|++||++||++||++|+|+||+||||++||++. +|||++|||++|||+|++|.++..
T Consensus 223 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~ 302 (409)
T PRK11790 223 AEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQE 302 (409)
T ss_pred HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHH
Confidence 999999999999999999999999999999875 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 181 ATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 181 ~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
++.+.+++|+.+|++|+++.+.||
T Consensus 303 ~~~~~~~~nl~~~~~~~~~~~~vn 326 (409)
T PRK11790 303 NIGLEVAGKLVKYSDNGSTLSAVN 326 (409)
T ss_pred HHHHHHHHHHHHHHcCCCcCccee
Confidence 999999999999999999988876
No 8
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-56 Score=379.36 Aligned_cols=198 Identities=29% Similarity=0.452 Sum_probs=178.4
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
+++++++++++|+||||++.++|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+ .++++.|.+.
T Consensus 53 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~ 132 (314)
T PRK06932 53 VLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATC 132 (314)
T ss_pred CCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 4678899741
Q ss_pred --C----ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC--CCC-----------------------
Q 045521 75 --Y----KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT--KYK----------------------- 123 (204)
Q Consensus 75 --~----~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~--~~~----------------------- 123 (204)
+ ..+.+|+||||||||+|+||+++|+++++|||+|+|++++..... .+.
T Consensus 133 ~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~ 212 (314)
T PRK06932 133 KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQ 212 (314)
T ss_pred ccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHh
Confidence 1 124689999999999999999999999999999999997642110 111
Q ss_pred ----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcC----CCCceEEcccCCCCcH
Q 045521 124 ----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELF----GLENVVLLPHAASGTE 176 (204)
Q Consensus 124 ----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~----~~~nvilTPH~a~~t~ 176 (204)
|++||++||++||++|+|+||+||||++||++.+ ||| ++|||++|||+|+.|.
T Consensus 213 ~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~ 292 (314)
T PRK06932 213 NLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASD 292 (314)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcH
Confidence 9999999999999999999999999999998764 898 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 045521 177 ETRKATADIVIENLEACFLNKP 198 (204)
Q Consensus 177 ~~~~~~~~~~~~nl~~~~~g~~ 198 (204)
++.+++.+.+++|+.+|++|++
T Consensus 293 e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 293 SAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998763
No 9
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-55 Score=384.51 Aligned_cols=198 Identities=25% Similarity=0.344 Sum_probs=181.5
Q ss_pred CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-C
Q 045521 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-G 74 (204)
Q Consensus 2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-~ 74 (204)
++++++++++|+||||++.|+|+||||+++|+++||.|+|++|+++.+||||++++||++.|+ .+++|.|.. .
T Consensus 110 ~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~ 189 (386)
T PLN03139 110 YVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189 (386)
T ss_pred CCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcccc
Confidence 589999999999999999999999999999999999999999999999999999999999999 467899974 1
Q ss_pred -CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CC---C-C---------------------
Q 045521 75 -YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TK---Y-K--------------------- 123 (204)
Q Consensus 75 -~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~---~-~--------------------- 123 (204)
...+.+|.||||||||+|+||+++|+++++|||+|++|+|+..+. .. + .
T Consensus 190 ~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T 269 (386)
T PLN03139 190 IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKT 269 (386)
T ss_pred ccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHH
Confidence 234679999999999999999999999999999999999874221 00 0 0
Q ss_pred -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521 124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR 179 (204)
Q Consensus 124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~ 179 (204)
|++||++||++||++|+|+||+||||++||++.+ |||++|||++|||+||.|.+++
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~ 349 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ 349 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHH
Confidence 9999999999999999999999999999998765 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q 045521 180 KATADIVIENLEACFLNKPL 199 (204)
Q Consensus 180 ~~~~~~~~~nl~~~~~g~~~ 199 (204)
.++.+.+++||.+|++|+++
T Consensus 350 ~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 350 LRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999864
No 10
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-55 Score=384.29 Aligned_cols=201 Identities=27% Similarity=0.379 Sum_probs=184.5
Q ss_pred CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC-C
Q 045521 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-G 74 (204)
Q Consensus 2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-~ 74 (204)
++++++++++|+||||+++|+|+|++|+++|+++||.|+|++++++.+||||++++||+++|+ .+++|.|.+ .
T Consensus 103 ~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~ 182 (385)
T PRK07574 103 YLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD 182 (385)
T ss_pred CCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc
Confidence 589999999999999999999999999999999999999999999999999999999999999 467899985 2
Q ss_pred -CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----C--C-CC----------------------
Q 045521 75 -YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----T--K-YK---------------------- 123 (204)
Q Consensus 75 -~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~--~-~~---------------------- 123 (204)
...+.+|+||||||||+|+||+++|++|++|||+|++|+|+..+. . . +.
T Consensus 183 ~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T 262 (385)
T PRK07574 183 CVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPET 262 (385)
T ss_pred ccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHH
Confidence 134678999999999999999999999999999999999875211 0 0 01
Q ss_pred -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521 124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR 179 (204)
Q Consensus 124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~ 179 (204)
|++||++||++||++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+++
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~ 342 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQ 342 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHH
Confidence 9999999999999999999999999999998765 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCC
Q 045521 180 KATADIVIENLEACFLNKPLLTP 202 (204)
Q Consensus 180 ~~~~~~~~~nl~~~~~g~~~~~~ 202 (204)
+++.+.+++||++|++|+++.|+
T Consensus 343 ~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 343 ARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999998875
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=5.8e-55 Score=381.46 Aligned_cols=204 Identities=30% Similarity=0.426 Sum_probs=185.0
Q ss_pred CCCCHHHHhcCCC--ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521 1 VGADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE 72 (204)
Q Consensus 1 t~i~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~ 72 (204)
+++++++++++|+ ||+|+++++|+||||+++|+++||.|+|+||+++.+||||++++||++.|+ .+++|.|.
T Consensus 72 ~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~ 151 (386)
T PLN02306 72 EDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYE 151 (386)
T ss_pred CCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCc
Confidence 3689999999996 699999999999999999999999999999999999999999999999999 36778885
Q ss_pred C---CCccccccCCCEEEEEeCChHHHHHHHHHh-hcCCEEEEEcCCCCCC-------------------------CCCC
Q 045521 73 M---GYKLTTKISGRSVGIIGLGRIGMAVAKRAE-AFGCFISYRSRAEKPN-------------------------TKYK 123 (204)
Q Consensus 73 ~---~~~~~~~l~g~tvGIvG~G~IG~~va~~~~-~fg~~V~~~~r~~~~~-------------------------~~~~ 123 (204)
+ ....+.+|+||||||||+|+||+++|++++ +|||+|++||++.+.. .++.
T Consensus 152 ~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ 231 (386)
T PLN02306 152 GWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSME 231 (386)
T ss_pred cccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHH
Confidence 3 122467899999999999999999999985 9999999999865310 0100
Q ss_pred ------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCC
Q 045521 124 ------------------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFG 161 (204)
Q Consensus 124 ------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~ 161 (204)
|++|||+||++||++|+|+||+||||++||++++|||+
T Consensus 232 ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~ 311 (386)
T PLN02306 232 EVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLAD 311 (386)
T ss_pred HHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhh
Confidence 99999999999999999999999999999987779999
Q ss_pred CCceEEcccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 162 LENVVLLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 162 ~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
+|||++|||+|+.|.++.+++.+.+++|+.+|++|+++.|.||
T Consensus 312 ~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 312 MKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred CCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 9999999999999999999999999999999999999999886
No 12
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=5.2e-55 Score=396.05 Aligned_cols=204 Identities=34% Similarity=0.524 Sum_probs=187.6
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
+++++++++++|+||||+++|+|+|++|+++|+++||.|+|+||+++.+||||++++||+++|+ .+++|.|.+.
T Consensus 50 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~ 129 (525)
T TIGR01327 50 TKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK 129 (525)
T ss_pred CCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999 4678999853
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC----C------CCC---------------------
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN----T------KYK--------------------- 123 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~----~------~~~--------------------- 123 (204)
...+.+|+||||||||+|+||+++|++|++|||+|++|+|+..+. . ...
T Consensus 130 ~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 130 AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRG 209 (525)
T ss_pred ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence 335789999999999999999999999999999999999853211 0 000
Q ss_pred ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHH
Q 045521 124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182 (204)
Q Consensus 124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~ 182 (204)
|++||++||++||++|+|+||+||||++||++++|||++|||++|||+|+.|.+++.++
T Consensus 210 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~ 289 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENV 289 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHH
Confidence 99999999999999999999999999999987779999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCC
Q 045521 183 ADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 183 ~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
.+.+++|+.+|++|+++.+.||
T Consensus 290 ~~~~~~ni~~~~~g~~~~~~vn 311 (525)
T TIGR01327 290 ATQVAEQVLDALKGLPVPNAVN 311 (525)
T ss_pred HHHHHHHHHHHHcCCCCCceee
Confidence 9999999999999999998876
No 13
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-54 Score=393.60 Aligned_cols=204 Identities=33% Similarity=0.506 Sum_probs=187.7
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCC
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMG 74 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~ 74 (204)
+++++++++++|+||||+++|+|+|++|+++|+++||.|+|+|++++.+||||++++||+++|+ .+++|.|.+.
T Consensus 52 ~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~ 131 (526)
T PRK13581 52 TKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK 131 (526)
T ss_pred CCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc
Confidence 4689999999999999999999999999999999999999999999999999999999999999 4678999853
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC----CC---C------------------------
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT----KY---K------------------------ 123 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~----~~---~------------------------ 123 (204)
...+.+|.||||||||+|+||+.+|+++++|||+|++|+|+..+.. .+ .
T Consensus 132 ~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~l 211 (526)
T PRK13581 132 KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGL 211 (526)
T ss_pred CccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcC
Confidence 2357799999999999999999999999999999999998542110 00 0
Q ss_pred --------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHH
Q 045521 124 --------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATA 183 (204)
Q Consensus 124 --------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~ 183 (204)
|++||++||++||++|+|+||+||||++||++++|||++|||++|||+|+.|.++++++.
T Consensus 212 i~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~ 291 (526)
T PRK13581 212 IGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVA 291 (526)
T ss_pred cCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHH
Confidence 999999999999999999999999999999887799999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCC
Q 045521 184 DIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 184 ~~~~~nl~~~~~g~~~~~~v~ 204 (204)
+.+++|+.+|++|+++.|.||
T Consensus 292 ~~~~~ni~~~~~g~~~~~~vn 312 (526)
T PRK13581 292 IQVAEQVIDALRGGPVPNAVN 312 (526)
T ss_pred HHHHHHHHHHHcCCCcCceee
Confidence 999999999999999999886
No 14
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=5.1e-54 Score=371.87 Aligned_cols=199 Identities=26% Similarity=0.403 Sum_probs=181.1
Q ss_pred CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCC---CchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDV---LTDDVADAAIGLTLAVLRR------FVRSEDGE 72 (204)
Q Consensus 2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~~R~------~~~~~~w~ 72 (204)
++++++++.+|+||||++.++|+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|+ .++++.|.
T Consensus 71 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~ 150 (347)
T PLN02928 71 RLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150 (347)
T ss_pred CCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcc
Confidence 58899999999999999999999999999999999999999986 7899999999999999999 46778897
Q ss_pred CCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-------------------CCCC----------
Q 045521 73 MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-------------------TKYK---------- 123 (204)
Q Consensus 73 ~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------------------~~~~---------- 123 (204)
+ +.+.+|+||||||||+|+||+++|+++++|||+|++|+|+..+. ..+.
T Consensus 151 ~--~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aD 228 (347)
T PLN02928 151 E--PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD 228 (347)
T ss_pred c--ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCC
Confidence 4 34678999999999999999999999999999999999863210 0010
Q ss_pred -----------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEE
Q 045521 124 -----------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVL 167 (204)
Q Consensus 124 -----------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvil 167 (204)
|++||++||++||++|+|+||+||||++||++++ |||++|||++
T Consensus 229 iVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nvii 308 (347)
T PLN02928 229 IVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVII 308 (347)
T ss_pred EEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEE
Confidence 9999999999999999999999999999998764 9999999999
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 045521 168 LPHAASGTEETRKATADIVIENLEACFLNKPLLTP 202 (204)
Q Consensus 168 TPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 202 (204)
|||+|+.|.++++++.+.+++|+.+|++|+++.+.
T Consensus 309 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 343 (347)
T PLN02928 309 TPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTGI 343 (347)
T ss_pred CCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCce
Confidence 99999999999999999999999999999987653
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-53 Score=363.83 Aligned_cols=204 Identities=24% Similarity=0.362 Sum_probs=182.8
Q ss_pred CCCCHHHHhcCC--CceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521 1 VGADAELIDSLP--KLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE 72 (204)
Q Consensus 1 t~i~~~~l~~~~--~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~ 72 (204)
+++++++++++| +||+|++.++|+|+||+++|+++||.|+|+|++++++||||++++||++.|+ .+++|.|.
T Consensus 55 ~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~ 134 (330)
T PRK12480 55 GKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT 134 (330)
T ss_pred CCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc
Confidence 378999999998 8999999999999999999999999999999999999999999999999999 35667653
Q ss_pred C-CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---C--C-----------------------
Q 045521 73 M-GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---Y--K----------------------- 123 (204)
Q Consensus 73 ~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~--~----------------------- 123 (204)
. ....+.+|+|+||||||+|+||+.+|+++++|||+|++|+++...... + .
T Consensus 135 w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 135 WQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred cccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence 1 112467899999999999999999999999999999999987532110 0 0
Q ss_pred ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC----------C----CCcCCCCceEEc
Q 045521 124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV----------P----EELFGLENVVLL 168 (204)
Q Consensus 124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~----~~l~~~~nvilT 168 (204)
|++||++||++||++|+|+||+||||++||+. + +|||++|||++|
T Consensus 215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT 294 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT 294 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence 99999999999999999999999999999962 1 269999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 169 PHAASGTEETRKATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 169 PH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
||+|+.|.++++++.+.+++|+.+|++|+++.++||
T Consensus 295 PHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 295 PHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 999999999999999999999999999999999986
No 16
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-51 Score=354.76 Aligned_cols=204 Identities=25% Similarity=0.334 Sum_probs=182.4
Q ss_pred CCCCHHHHhcCCC--ceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCC
Q 045521 1 VGADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGE 72 (204)
Q Consensus 1 t~i~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~ 72 (204)
+++++++++++|+ ||+|++.|+|+|++|+++|+++||.|+|+||+++.+||||++++||++.|+ .++++.|.
T Consensus 55 ~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~ 134 (332)
T PRK08605 55 IPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR 134 (332)
T ss_pred CCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc
Confidence 4789999999997 999999999999999999999999999999999999999999999999999 36677764
Q ss_pred C-CCccccccCCCEEEEEeCChHHHHHHHHH-hhcCCEEEEEcCCCCCC--------CCCC-------------------
Q 045521 73 M-GYKLTTKISGRSVGIIGLGRIGMAVAKRA-EAFGCFISYRSRAEKPN--------TKYK------------------- 123 (204)
Q Consensus 73 ~-~~~~~~~l~g~tvGIvG~G~IG~~va~~~-~~fg~~V~~~~r~~~~~--------~~~~------------------- 123 (204)
. ....+++|+|+||||||+|+||+++|+++ ++|||+|++++++.... .+..
T Consensus 135 ~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t 214 (332)
T PRK08605 135 WEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYN 214 (332)
T ss_pred cccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcch
Confidence 1 11246799999999999999999999999 89999999999865321 0000
Q ss_pred -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCC--CCC------------CcCCCCceE
Q 045521 124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQ--VPE------------ELFGLENVV 166 (204)
Q Consensus 124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~------------~l~~~~nvi 166 (204)
|.++|+++|+++|++|+|+||+||||+.||. +.+ +||++|||+
T Consensus 215 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvi 294 (332)
T PRK08605 215 HYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVI 294 (332)
T ss_pred hhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEE
Confidence 9999999999999999999999999999982 222 499999999
Q ss_pred EcccCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 167 LLPHAASGTEETRKATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 167 lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
+|||+|++|.++.+++...+++|+.+|++|++..+.||
T Consensus 295 lTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 295 LTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN 332 (332)
T ss_pred ECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 99999999999999999999999999999999999886
No 17
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-51 Score=342.76 Aligned_cols=202 Identities=31% Similarity=0.456 Sum_probs=183.1
Q ss_pred CCCCHHHHh-cCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC
Q 045521 1 VGADAELID-SLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM 73 (204)
Q Consensus 1 t~i~~~~l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~ 73 (204)
|++++++++ ...+||+|.+.++|+||+|++++.++||.|.|+|.+|+.++||+++++++++.|+ .+++|+|.+
T Consensus 57 tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr 136 (406)
T KOG0068|consen 57 TKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR 136 (406)
T ss_pred CeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee
Confidence 789999999 5668999999999999999999999999999999999999999999999999999 578999997
Q ss_pred CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC------------------CCC------------
Q 045521 74 GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT------------------KYK------------ 123 (204)
Q Consensus 74 ~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------------------~~~------------ 123 (204)
....|.+|+|||+||+|+|+||+++|+++++|||+|++||+...... +|.
T Consensus 137 ~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~ 216 (406)
T KOG0068|consen 137 VKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEK 216 (406)
T ss_pred cceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhh
Confidence 44578999999999999999999999999999999999987543210 110
Q ss_pred ---------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC---CCCcCCCCceEEcccCCCCcHHHH
Q 045521 124 ---------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV---PEELFGLENVVLLPHAASGTEETR 179 (204)
Q Consensus 124 ---------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~l~~~~nvilTPH~a~~t~~~~ 179 (204)
|.+||++||++||++|+++|||+|||+.||.. .+.|.++|||++|||+|++|.|++
T Consensus 217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq 296 (406)
T KOG0068|consen 217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQ 296 (406)
T ss_pred ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHH
Confidence 99999999999999999999999999999976 358999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCC
Q 045521 180 KATADIVIENLEACFLNKPLLTPV 203 (204)
Q Consensus 180 ~~~~~~~~~nl~~~~~g~~~~~~v 203 (204)
.+....+++++.+|++| .....|
T Consensus 297 ~~iaievaea~~~~~~~-~~~g~V 319 (406)
T KOG0068|consen 297 SRIAIEVAEAVSDYING-NSAGSV 319 (406)
T ss_pred HHHHHHHHHHHHHHhcc-Ccccee
Confidence 99999999999999998 433333
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=9e-51 Score=345.27 Aligned_cols=202 Identities=51% Similarity=0.822 Sum_probs=183.8
Q ss_pred CCHHHHhcC-CCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCC--
Q 045521 3 ADAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEM-- 73 (204)
Q Consensus 3 i~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~-- 73 (204)
++.+++.+. |++|+|.++|+|+||||+++|++|||+|+|+|+.+.++|||++++++|.++|+ ++++|.|..
T Consensus 73 ~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~ 152 (336)
T KOG0069|consen 73 FTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAG 152 (336)
T ss_pred HhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccC
Confidence 355666665 99999999999999999999999999999999999999999999999999999 678899852
Q ss_pred CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----------CC--------------------
Q 045521 74 GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK----------YK-------------------- 123 (204)
Q Consensus 74 ~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----------~~-------------------- 123 (204)
.++.+..+.||||||+|+|+||+++|++|++|||.+.|++|++.+... +.
T Consensus 153 ~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~ 232 (336)
T KOG0069|consen 153 GWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETR 232 (336)
T ss_pred CccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHH
Confidence 456688999999999999999999999999999999999997653211 00
Q ss_pred ----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHH
Q 045521 124 ----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKA 181 (204)
Q Consensus 124 ----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~ 181 (204)
|.++|+++|++||++|+|.+++||||++||.+++||++++|+++|||+|+.|.+++.+
T Consensus 233 ~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~ 312 (336)
T KOG0069|consen 233 HLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREK 312 (336)
T ss_pred HHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHH
Confidence 9999999999999999999999999999996667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCC
Q 045521 182 TADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 182 ~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
|...++.|+.++++|+++.++++
T Consensus 313 m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 313 MAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred HHHHHHHHHHHHHccCCCCCcCC
Confidence 99999999999999999888764
No 19
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=5.3e-50 Score=342.24 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=170.7
Q ss_pred CHHHHhcCCCceEEEECCCCCCCCChhh-----HhhCCcEEEeCCC-CCchhHHHHHHHHHHHHHhh------HHHhcCC
Q 045521 4 DAELIDSLPKLEIVATCSAGLDKIDLVK-----CKEKGIQVTNTPD-VLTDDVADAAIGLTLAVLRR------FVRSEDG 71 (204)
Q Consensus 4 ~~~~l~~~~~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~------~~~~~~w 71 (204)
+.++++ .|+||||++.|+|+|++|.+. +.++||.|+|+++ .++.+||||++++||++.|+ .++++.|
T Consensus 48 ~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w 126 (312)
T PRK15469 48 PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHW 126 (312)
T ss_pred ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCc
Confidence 456675 589999999999999998322 4458999999864 68999999999999999999 3567899
Q ss_pred CCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CC----------------------
Q 045521 72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YK---------------------- 123 (204)
Q Consensus 72 ~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~---------------------- 123 (204)
.+ ....+++||||||||+|+||+++|+++++|||+|++|+++.+.... +.
T Consensus 127 ~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T 204 (312)
T PRK15469 127 QP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPET 204 (312)
T ss_pred CC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHH
Confidence 74 1245799999999999999999999999999999999986543110 00
Q ss_pred -----------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CcCCCCceEEcccCCCCcHHHH
Q 045521 124 -----------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETR 179 (204)
Q Consensus 124 -----------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~l~~~~nvilTPH~a~~t~~~~ 179 (204)
|++||++||++||++|+|+||+||||++||++.+ |||++|||++|||+|+.|.+.
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~- 283 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA- 283 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH-
Confidence 9999999999999999999999999999998865 999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCC
Q 045521 180 KATADIVIENLEACFLNKPLLTPVV 204 (204)
Q Consensus 180 ~~~~~~~~~nl~~~~~g~~~~~~v~ 204 (204)
++...+.+|+++|++|+++.|.||
T Consensus 284 -~~~~~~~~n~~~~~~g~~~~~~V~ 307 (312)
T PRK15469 284 -EAVEYISRTIAQLEKGERVCGQVD 307 (312)
T ss_pred -HHHHHHHHHHHHHHcCCCCcccCC
Confidence 688999999999999999999986
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=9.9e-49 Score=340.50 Aligned_cols=181 Identities=27% Similarity=0.374 Sum_probs=165.0
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK 80 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~ 80 (204)
|++++++++ .|+||||+++++|+||||+++++++||.|+|+||+++.+||||++++||++.|+ .+.+
T Consensus 47 t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------~g~~ 113 (378)
T PRK15438 47 TKVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------DGFS 113 (378)
T ss_pred CCCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------CCCC
Confidence 578999996 699999999999999999999999999999999999999999999999999985 2457
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC---CCC----------------------------------
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT---KYK---------------------------------- 123 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~~~---------------------------------- 123 (204)
|+||||||||+|+||+++|+++++|||+|++||+...... .+.
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 9999999999999999999999999999999997532110 111
Q ss_pred ---------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521 124 ---------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIE 188 (204)
Q Consensus 124 ---------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~~~~ 188 (204)
|++||++||+++|++|++.||+||||++||.++++||..++ ++|||+||+|.++..++..++++
T Consensus 194 l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~ 272 (378)
T PRK15438 194 IRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFE 272 (378)
T ss_pred HhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987778987665 99999999999999999999999
Q ss_pred HHHHHHc
Q 045521 189 NLEACFL 195 (204)
Q Consensus 189 nl~~~~~ 195 (204)
|+.+|+.
T Consensus 273 ~l~~~~~ 279 (378)
T PRK15438 273 AYSKFIG 279 (378)
T ss_pred HHHHHHc
Confidence 9999994
No 21
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-48 Score=331.84 Aligned_cols=189 Identities=28% Similarity=0.379 Sum_probs=166.8
Q ss_pred cCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCCccccccCC
Q 045521 10 SLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGYKLTTKISG 83 (204)
Q Consensus 10 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~~~~~~l~g 83 (204)
.+|+||||++.++|+|++|+++|++++|.++|. |+++.+||||++++||++.|+ .+++|.|.+. .+.+|+|
T Consensus 46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~g 122 (303)
T PRK06436 46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYN 122 (303)
T ss_pred CCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCC
Confidence 458999999999999999999999888877774 889999999999999999999 5678999852 3578999
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-C-C-CC-------------------------------------
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-T-K-YK------------------------------------- 123 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-~-~-~~------------------------------------- 123 (204)
|||||||+|+||+++|+++++|||+|++|+|+..+. . . +.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~g 202 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKG 202 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCC
Confidence 999999999999999999999999999999864321 0 0 11
Q ss_pred --------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCC-CCcHHHHHHHHHHHHHHHHHHH
Q 045521 124 --------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAA-SGTEETRKATADIVIENLEACF 194 (204)
Q Consensus 124 --------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a-~~t~~~~~~~~~~~~~nl~~~~ 194 (204)
|++||++||+++|++|++.||+||||++||++++. .+|||++|||++ +.|.++.+++.+.+++|+.+|+
T Consensus 203 a~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~ 280 (303)
T PRK06436 203 LAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFF 280 (303)
T ss_pred eEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986653 689999999976 5899999999999999999999
Q ss_pred cCCCCCCCCC
Q 045521 195 LNKPLLTPVV 204 (204)
Q Consensus 195 ~g~~~~~~v~ 204 (204)
+|++ .|.|+
T Consensus 281 ~g~~-~~~V~ 289 (303)
T PRK06436 281 EGKP-KNIVR 289 (303)
T ss_pred cCCC-CceEc
Confidence 9987 57764
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=3.7e-48 Score=337.71 Aligned_cols=184 Identities=27% Similarity=0.413 Sum_probs=168.0
Q ss_pred CCCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccc
Q 045521 1 VGADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTK 80 (204)
Q Consensus 1 t~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~ 80 (204)
|++++++++. |+||||+++++|+||||+++++++||.|+|+||+++.+||||+++++|++.|+ .+.+
T Consensus 47 t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------~g~~ 113 (381)
T PRK00257 47 TRVDRALLEG-SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------EGVD 113 (381)
T ss_pred CCCCHHHhcC-CCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------cCCC
Confidence 5789999984 89999999999999999999999999999999999999999999999999985 2468
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC---CCC----------------------------------
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT---KYK---------------------------------- 123 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~~~---------------------------------- 123 (204)
|+||||||||+|+||+++|+++++|||+|++||+...... .+.
T Consensus 114 l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~ 193 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAF 193 (381)
T ss_pred cCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHH
Confidence 9999999999999999999999999999999997532110 000
Q ss_pred ---------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521 124 ---------------GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIE 188 (204)
Q Consensus 124 ---------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a~~t~~~~~~~~~~~~~ 188 (204)
|++||++||+++|++|++.+|+||||++||.++++||.. |+++|||+||+|.++..++.+++++
T Consensus 194 l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~ 272 (381)
T PRK00257 194 LASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQ 272 (381)
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877789986 9999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 045521 189 NLEACFLNKP 198 (204)
Q Consensus 189 nl~~~~~g~~ 198 (204)
|+.+|+.+.+
T Consensus 273 nl~~~~~~~~ 282 (381)
T PRK00257 273 ALCRFFGIPA 282 (381)
T ss_pred HHHHHHcCCC
Confidence 9999998764
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=4.6e-36 Score=237.65 Aligned_cols=118 Identities=46% Similarity=0.673 Sum_probs=99.4
Q ss_pred HHHHHHHHhh------HHHhcCCC-CCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C-
Q 045521 55 IGLTLAVLRR------FVRSEDGE-MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K- 121 (204)
Q Consensus 55 l~~~L~~~R~------~~~~~~w~-~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~- 121 (204)
+++||++.|+ .++++.|. +....+.+|+|+||||||+|+||+++|+++++|||+|+||+|+.++.. .
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 6899999999 56789992 223457899999999999999999999999999999999999876321 0
Q ss_pred -CC---------------------------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC
Q 045521 122 -YK---------------------------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV 155 (204)
Q Consensus 122 -~~---------------------------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~ 155 (204)
+. |++|||+||+++|++|+|+||+||||++||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 00 99999999999999999999999999999998
Q ss_pred CC-CcCCCCceEEcccCC
Q 045521 156 PE-ELFGLENVVLLPHAA 172 (204)
Q Consensus 156 ~~-~l~~~~nvilTPH~a 172 (204)
.+ |||++|||++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 76 999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.92 E-value=3.5e-25 Score=188.06 Aligned_cols=190 Identities=28% Similarity=0.430 Sum_probs=164.6
Q ss_pred CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhh------HHHhcCCCCCC
Q 045521 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR------FVRSEDGEMGY 75 (204)
Q Consensus 2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~------~~~~~~w~~~~ 75 (204)
.++++-+++++-||++...+.|+|++|+.++.+.||.|||.|+..-+.+|+-++.++|.++|+ ..++|.|.+..
T Consensus 84 ~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~ 163 (435)
T KOG0067|consen 84 TLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGL 163 (435)
T ss_pred ccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeech
Confidence 478899999999999999999999999999999999999999999999999999999999999 45778776311
Q ss_pred -------ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---------------CC----------
Q 045521 76 -------KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---------------YK---------- 123 (204)
Q Consensus 76 -------~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---------------~~---------- 123 (204)
.-....+|.++|++|+|++|++++.++++||..|++||+......+ |.
T Consensus 164 ~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~ 243 (435)
T KOG0067|consen 164 EQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNL 243 (435)
T ss_pred hhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeeccc
Confidence 1134689999999999999999999999999999999876432100 00
Q ss_pred ---------------------------cceeCHHHHHHHHHcCCceEEEeeCCCCCCCC--CCCcCCCCceEEcccCCCC
Q 045521 124 ---------------------------GALVDESELVSALLEDRLAAAVLDVFEHEPQV--PEELFGLENVVLLPHAASG 174 (204)
Q Consensus 124 ---------------------------G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~l~~~~nvilTPH~a~~ 174 (204)
|.+||+.+|.++|++|++.+++ |.. ..||.+.||.++|||.+++
T Consensus 244 ~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~ 316 (435)
T KOG0067|consen 244 NEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWY 316 (435)
T ss_pred CcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchh
Confidence 9999999999999999999888 221 2378899999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCC
Q 045521 175 TEETRKATADIVIENLEACFLNKP 198 (204)
Q Consensus 175 t~~~~~~~~~~~~~nl~~~~~g~~ 198 (204)
++.+..++.+.+...+++-+.|..
T Consensus 317 ~e~~~~e~re~aa~eiR~ai~g~i 340 (435)
T KOG0067|consen 317 SEAASVELREVAALEIRRAITGRI 340 (435)
T ss_pred hHHHHHHHHHHHhhhhhhccCCCC
Confidence 999999999999999998887754
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.80 E-value=2.1e-19 Score=135.63 Aligned_cols=53 Identities=42% Similarity=0.679 Sum_probs=49.0
Q ss_pred CCCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCCCchhHHHHH
Q 045521 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAA 54 (204)
Q Consensus 2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~ 54 (204)
++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||+
T Consensus 49 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 49 PLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcCHHHHhccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 48999999999999999999999999999999999999999999999999999
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.60 E-value=2.2e-15 Score=127.71 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=87.1
Q ss_pred CCCHHHHhcCCCceEEEECCCCCCCCChh-hHhhCCcEEE------eCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCC
Q 045521 2 GADAELIDSLPKLEIVATCSAGLDKIDLV-KCKEKGIQVT------NTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMG 74 (204)
Q Consensus 2 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~ 74 (204)
++++++++.+| .++...+|+++.|++ +|+++||+|+ |++.+++.++||+++++++...
T Consensus 81 ~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------ 145 (287)
T TIGR02853 81 VLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------ 145 (287)
T ss_pred cccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------
Confidence 57889999988 367788999999999 8999999999 8899999999999999888442
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+.+++|++++|+|+|.||+.+|+.|++||++|.+++|+..
T Consensus 146 ---~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 146 ---DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred ---CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3478999999999999999999999999999999998753
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.48 E-value=2.7e-13 Score=121.00 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=97.1
Q ss_pred EECCCCCCCCC-hhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHH
Q 045521 18 ATCSAGLDKID-LVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGM 96 (204)
Q Consensus 18 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~ 96 (204)
=-+++|+..+- ++.....+|+|+|+|++++.+++|+++++++++....+|.+ +..+.||||+|+|+|+||+
T Consensus 196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~--------~~~LaGKtVgVIG~G~IGr 267 (476)
T PTZ00075 196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRAT--------DVMIAGKTVVVCGYGDVGK 267 (476)
T ss_pred ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhc--------CCCcCCCEEEEECCCHHHH
Confidence 34667776652 22223468999999999999999999999999996666554 2479999999999999999
Q ss_pred HHHHHHhhcCCEEEEEcCCCCCC-----CCCC----------------------------------c------ceeCHHH
Q 045521 97 AVAKRAEAFGCFISYRSRAEKPN-----TKYK----------------------------------G------ALVDESE 131 (204)
Q Consensus 97 ~va~~~~~fg~~V~~~~r~~~~~-----~~~~----------------------------------G------~lvd~~a 131 (204)
.+|+++++|||+|+++++.+... .++. | +..|++.
T Consensus 268 ~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei 347 (476)
T PTZ00075 268 GCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEI 347 (476)
T ss_pred HHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHH
Confidence 99999999999999986553211 0100 2 2238889
Q ss_pred HHHHHHcCCceEEEeeCCCCCCCCC
Q 045521 132 LVSALLEDRLAAAVLDVFEHEPQVP 156 (204)
Q Consensus 132 L~~aL~~g~i~ga~lDV~~~EP~~~ 156 (204)
++++|+++. ++|+++.||...
T Consensus 348 ~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 348 QVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred hHHHHHhcC----CceeecccCCCC
Confidence 999998754 789999998654
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.15 E-value=2.3e-10 Score=97.53 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=81.8
Q ss_pred CCHHHHhcCCCceEEEECCCCCCCCChhhHhhCCcEEEeCCCC------CchhHHHHHHHHHHHHHhhHHHhcCCCCCCc
Q 045521 3 ADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDV------LTDDVADAAIGLTLAVLRRFVRSEDGEMGYK 76 (204)
Q Consensus 3 i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~ 76 (204)
++++.++.+|+...+. .|.+.++++ +.+.++||.+.+.... ++.++||.++.+.+...
T Consensus 83 ~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~-------------- 146 (296)
T PRK08306 83 LTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT-------------- 146 (296)
T ss_pred chHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC--------------
Confidence 4788999999997554 588889987 7889999999987654 88999999777654211
Q ss_pred cccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 77 LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 77 ~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+.++.|++++|+|+|.+|+.+++.|+.+|++|.+++|+..
T Consensus 147 -~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 147 -PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred -CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 2467899999999999999999999999999999998753
No 29
>PLN02494 adenosylhomocysteinase
Probab=98.76 E-value=6.7e-09 Score=92.90 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=61.0
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CCCC-------------------------------
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TKYK------------------------------- 123 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~~~------------------------------- 123 (204)
.+.||+|+|+|+|.||+.+|+++++|||+|+++++.+... .++.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~ 330 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRK 330 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhc
Confidence 4789999999999999999999999999999997765310 1110
Q ss_pred -------------cceeCHHHHHHH--HHcCCceEEEeeCCCCCC
Q 045521 124 -------------GALVDESELVSA--LLEDRLAAAVLDVFEHEP 153 (204)
Q Consensus 124 -------------G~lvd~~aL~~a--L~~g~i~ga~lDV~~~EP 153 (204)
+..||+++|.++ ++++.++ +.+|+|+.|-
T Consensus 331 MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 331 MKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred CCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 678999999998 9999998 9999998753
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.44 E-value=2.8e-07 Score=81.62 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=58.0
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CCC------------C-------------------
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN-----TKY------------K------------------- 123 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~~------------~------------------- 123 (204)
.+.|++|+|+|+|.||+.+|+++++||++|+++++.+... .++ +
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~~~ 271 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFEN 271 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHHhc
Confidence 4789999999999999999999999999999986554210 000 0
Q ss_pred ------------cce-eCHHHHHHHHHcCCceEEEeeCCCC
Q 045521 124 ------------GAL-VDESELVSALLEDRLAAAVLDVFEH 151 (204)
Q Consensus 124 ------------G~l-vd~~aL~~aL~~g~i~ga~lDV~~~ 151 (204)
+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 272 mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 272 MKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred CCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 565 9999999998887777799999873
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.36 E-value=4.6e-07 Score=77.74 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.6
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..|+||||||||+|+||+++|++|++|||+|+++++..
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~ 49 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPG 49 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcc
Confidence 46999999999999999999999999999998886543
No 32
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.34 E-value=1.9e-07 Score=75.25 Aligned_cols=92 Identities=17% Similarity=0.371 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC--------C-----------CCC-------cceeCHHH
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN--------T-----------KYK-------GALVDESE 131 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~--------~-----------~~~-------G~lvd~~a 131 (204)
+.+++||+++|+|+|++|+.+|+.|..+|++|+++|++.... . ..+ +.+|+++.
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALGGVINDDT 102 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccccccCHHH
Confidence 457899999999999999999999999999999988754210 0 000 67788777
Q ss_pred HHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCceEEcccCC
Q 045521 132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAA 172 (204)
Q Consensus 132 L~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~a 172 (204)
+ +.|+.+.|.+.+-+.+.. |. ....+.-..+++-|.+.
T Consensus 103 ~-~~l~~~~v~~~AN~~~~~-~~-~~~~L~~~Gi~~~Pd~~ 140 (200)
T cd01075 103 I-PQLKAKAIAGAANNQLAD-PR-HGQMLHERGILYAPDYV 140 (200)
T ss_pred H-HHcCCCEEEECCcCccCC-Hh-HHHHHHHCCCEEeCcee
Confidence 6 667777777777666543 10 12444455677777443
No 33
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.16 E-value=6.3e-06 Score=73.47 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=63.0
Q ss_pred EECCCCCCCC-ChhhHhhCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCC-CCccccccCCCEEEEEeCChHH
Q 045521 18 ATCSAGLDKI-DLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEM-GYKLTTKISGRSVGIIGLGRIG 95 (204)
Q Consensus 18 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~-~~~~~~~l~g~tvGIvG~G~IG 95 (204)
=-+++|+..+ ......+.+++|.|++..+..+.-|...+.- ++.|.. .......+.|++|+|+|+|.||
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------~s~~~ai~rat~~~l~Gk~VlViG~G~IG 224 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------ESLLDGIKRATNVLIAGKVVVVAGYGDVG 224 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------hhhHHHHHHhccCCCCCCEEEEECCCHHH
Confidence 3466777665 2223345789999999988887555333222 222320 0001235799999999999999
Q ss_pred HHHHHHHhhcCCEEEEEcCCCC
Q 045521 96 MAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 96 ~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+.+|++|+++|++|+++++.+.
T Consensus 225 ~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 225 KGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred HHHHHHHHhCCCEEEEEcCCch
Confidence 9999999999999999987653
No 34
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=98.14 E-value=9.4e-06 Score=66.72 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=44.7
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCccee-----CHHHHHHHHHc-CCce
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALV-----DESELVSALLE-DRLA 142 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lv-----d~~aL~~aL~~-g~i~ 142 (204)
.+|++++|.|.|||++|+.+|++|..+|++|++++.+. |.++ |.++|.+..+. |.+.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~-------g~~~~~~Gld~~~l~~~~~~~g~l~ 89 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD-------GTIYNPDGLDVPALLAYKKEHGSVL 89 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------CeEECCCCCCHHHHHHHHHhcCCcc
Confidence 46899999999999999999999999999999776553 3333 67777766553 4444
No 35
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=98.10 E-value=1.2e-05 Score=67.02 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=66.6
Q ss_pred chhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce
Q 045521 47 TDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL 126 (204)
Q Consensus 47 ~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l 126 (204)
.++++--++..+..++++ .+.+|+|+||.|.|||++|+.+|++|..+|++|++++.+. |.+
T Consensus 14 ~~aTg~Gv~~~~~~~~~~------------~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~-------G~i 74 (254)
T cd05313 14 PEATGYGLVYFVEEMLKD------------RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK-------GYV 74 (254)
T ss_pred CchhHHHHHHHHHHHHHh------------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------ceE
Confidence 445554455555555543 2457899999999999999999999999999999776643 444
Q ss_pred e-----CHHHHHHH---HHcCC--ceEEEeeCC-CCCCCCCCCcCCCCceEEcccC
Q 045521 127 V-----DESELVSA---LLEDR--LAAAVLDVF-EHEPQVPEELFGLENVVLLPHA 171 (204)
Q Consensus 127 v-----d~~aL~~a---L~~g~--i~ga~lDV~-~~EP~~~~~l~~~~nvilTPH~ 171 (204)
. |.++|.+. -++.. +..+. +-+ ..++..+..+|.+|--|+-|=-
T Consensus 75 ~~~~Gld~~~l~~l~~~~~~~~~~v~~~~-~~~~~a~~~~~~~~~~~~~DIliPcA 129 (254)
T cd05313 75 YDPDGFTGEKLAELKEIKEVRRGRVSEYA-KKYGTAKYFEGKKPWEVPCDIAFPCA 129 (254)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcHHHHh-hcCCCCEEeCCcchhcCCCcEEEecc
Confidence 4 44455222 22222 33221 111 1344445678888888888853
No 36
>PLN02477 glutamate dehydrogenase
Probab=97.92 E-value=3.2e-05 Score=68.72 Aligned_cols=82 Identities=26% Similarity=0.298 Sum_probs=57.0
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCccee-----CHHHHHHHHHc-CCceEEEeeCCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALV-----DESELVSALLE-DRLAAAVLDVFEH 151 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lv-----d~~aL~~aL~~-g~i~ga~lDV~~~ 151 (204)
+.+|.|+||.|.|||++|+.+|++|...|++|++++.+. |.++ |.++|++.-++ |.+.++ ...
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~-------G~iy~~~GLD~~~L~~~k~~~g~l~~~----~~a 269 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT-------GAVKNENGLDIPALRKHVAEGGGLKGF----PGG 269 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC-------CeEECCCCCCHHHHHHHHHhcCchhcc----ccc
Confidence 457999999999999999999999999999999775543 3343 56677665443 334322 223
Q ss_pred CCCCCCCcCCCCceEEccc
Q 045521 152 EPQVPEELFGLENVVLLPH 170 (204)
Q Consensus 152 EP~~~~~l~~~~nvilTPH 170 (204)
++..+..+|..|--|+-|=
T Consensus 270 ~~i~~~e~l~~~~DvliP~ 288 (410)
T PLN02477 270 DPIDPDDILVEPCDVLIPA 288 (410)
T ss_pred eEecCccceeccccEEeec
Confidence 4444456666676677665
No 37
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.87 E-value=5.9e-05 Score=67.53 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=56.6
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHH--HHHH---cCCceEEEee
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELV--SALL---EDRLAAAVLD 147 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~--~aL~---~g~i~ga~lD 147 (204)
+.+|.|+||.|.|+|++|+..|+.|..+|++|++++.+. |.+ +|.++|. ..++ .+++.++.-
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~-------G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~- 294 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD-------GYIYDPDGIDREKLDYIMELKNLYRGRIREYAE- 294 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------CeEECCCCCCHHHHHHHHHHHhhcCCchhhhHh-
Confidence 457999999999999999999999999999999977644 333 6666664 1122 355654321
Q ss_pred CCCCCCCCCCCcCCCCceEEcccC
Q 045521 148 VFEHEPQVPEELFGLENVVLLPHA 171 (204)
Q Consensus 148 V~~~EP~~~~~l~~~~nvilTPH~ 171 (204)
-+..+....+.+|+.+--|+-|=.
T Consensus 295 ~~ga~~i~~d~~~~~~cDIliPaA 318 (444)
T PRK14031 295 KYGCKYVEGARPWGEKGDIALPSA 318 (444)
T ss_pred hcCCEEcCCcccccCCCcEEeecc
Confidence 111122233456666666666643
No 38
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.83 E-value=2.6e-05 Score=60.71 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=29.8
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|+|||.+|+-+|+.|+++|++|..++..+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 46899999999999999999999999999999988754
No 39
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.82 E-value=0.00018 Score=64.56 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce
Q 045521 47 TDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL 126 (204)
Q Consensus 47 ~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l 126 (204)
.++++--++..+...+++ .+.+|.|+||.|.|||++|+.+|+.|..+|++|++++.+. |.+
T Consensus 208 ~~aTg~Gv~~~~~~~~~~------------~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~-------G~i 268 (445)
T PRK09414 208 TEATGYGLVYFAEEMLKA------------RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSS-------GYV 268 (445)
T ss_pred CCcccHHHHHHHHHHHHh------------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC-------ceE
Confidence 445555555555544443 1457899999999999999999999999999999885432 222
Q ss_pred -----eCHHHHHHHHHc--CCceEEEeeCCCCCCCCCCCcCCCCceEEcccC
Q 045521 127 -----VDESELVSALLE--DRLAAAVLDVFEHEPQVPEELFGLENVVLLPHA 171 (204)
Q Consensus 127 -----vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~l~~~~nvilTPH~ 171 (204)
+|.++|++.-++ |.+.++. +-+..++..+..+|..+--|+-|=.
T Consensus 269 yn~~GLD~~~L~~~k~~~~~~l~~~~-~~~~~~~i~~~~i~~~d~DVliPaA 319 (445)
T PRK09414 269 YDEEGIDLEKLKEIKEVRRGRISEYA-EEFGAEYLEGGSPWSVPCDIALPCA 319 (445)
T ss_pred ECCCCCCHHHHHHHHHhcCCchhhhh-hhcCCeecCCccccccCCcEEEecC
Confidence 477788776654 3565432 1112233344567777777777743
No 40
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.80 E-value=8.4e-05 Score=66.58 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=58.0
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHH--HHHHH---cCCceEEEee
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESEL--VSALL---EDRLAAAVLD 147 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL--~~aL~---~g~i~ga~lD 147 (204)
+.+|.|+||.|-|+|++|+.+|++|..+|++|+.++.+. |.+ +|.++| +..++ .|.+..+.--
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~-------G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~ 304 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD-------GYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKH 304 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC-------CcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhc
Confidence 457999999999999999999999999999999776554 333 355555 22222 2555543110
Q ss_pred CCCCCCCCCCCcCCCCceEEcccC
Q 045521 148 VFEHEPQVPEELFGLENVVLLPHA 171 (204)
Q Consensus 148 V~~~EP~~~~~l~~~~nvilTPH~ 171 (204)
....+..+...+|..|--|+.|=-
T Consensus 305 ~~~a~~~~~~~~~~~~cDI~iPcA 328 (454)
T PTZ00079 305 SSTAKYVPGKKPWEVPCDIAFPCA 328 (454)
T ss_pred cCCcEEeCCcCcccCCccEEEecc
Confidence 111223334578888888888853
No 41
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.76 E-value=3.6e-05 Score=67.76 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=61.8
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~ 157 (204)
+.+|+|+||.|-|+|++|+.+|+.+...|++|+.+|.+.... |.-.=+|.++|. .+++ +. +-..+-+..++++.+
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i--~~~~Gld~~~l~-~~~~-~~-~~v~~~~ga~~i~~~ 276 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGI--YDEDGLDVEALL-ELKE-RR-GSVAEYAGAEYITNE 276 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCce--ecCCCCCHHHHH-HHhh-hh-hhHHhhcCceEcccc
Confidence 445899999999999999999999999999999988765310 111225667777 3332 11 122233345667667
Q ss_pred CcCCCCceEEccc
Q 045521 158 ELFGLENVVLLPH 170 (204)
Q Consensus 158 ~l~~~~nvilTPH 170 (204)
.+|..|--|+.|-
T Consensus 277 e~~~~~cDIl~Pc 289 (411)
T COG0334 277 ELLEVDCDILIPC 289 (411)
T ss_pred ccccccCcEEccc
Confidence 8899888888885
No 42
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.69 E-value=6.9e-05 Score=61.18 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=43.3
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc-CCc
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE-DRL 141 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~-g~i 141 (204)
.+|.|++|.|.|||++|+.+|+.|...|++|++++.+... -|.- =+|.+++++..+. +.+
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~--i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGY--IYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCc--EECC-CCCHHHHHHHHHhhCCc
Confidence 4689999999999999999999999999998776554310 0111 1667777776543 434
No 43
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.67 E-value=0.00032 Score=62.91 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=56.8
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCccee-----CHHH---HHHHHHc-CCceEEEeeC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALV-----DESE---LVSALLE-DRLAAAVLDV 148 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lv-----d~~a---L~~aL~~-g~i~ga~lDV 148 (204)
+.+|.|+||.|-|+|++|+.+|++|..+|++|++++.+. |.+. |.++ |.+.-++ |.+.....+-
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~-------G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~ 295 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD-------GYIYDPDGISGEKIDYMLELRASGNDIVAPYAEK 295 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC-------ceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhc
Confidence 457999999999999999999999999999999977654 4444 4555 3333222 2221001111
Q ss_pred C-CCCCCCCCCcCCCCceEEcccC
Q 045521 149 F-EHEPQVPEELFGLENVVLLPHA 171 (204)
Q Consensus 149 ~-~~EP~~~~~l~~~~nvilTPH~ 171 (204)
| ..++.+...+|.+|--|+-|=-
T Consensus 296 ~~ga~~i~~~~~~~~~cDVliPcA 319 (445)
T PRK14030 296 FPGSTFFAGKKPWEQKVDIALPCA 319 (445)
T ss_pred CCCCEEcCCccceeccccEEeecc
Confidence 2 1233344578888888888853
No 44
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.62 E-value=7.8e-05 Score=64.50 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=33.4
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..|+|+||||||+|++|+++|+.|+.+|++|+++++.
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~ 49 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRE 49 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999999999999999999999876554
No 45
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.59 E-value=0.0001 Score=65.59 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=34.7
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.|++|+|+|+|.||+.++++++++|++|+++++.+
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 34789999999999999999999999999999987764
No 46
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.37 E-value=0.00028 Score=60.76 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=30.4
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
|+||+|||||+|++|+++|+.|+.+|++|+++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~ 34 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR 34 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence 5799999999999999999999999999875443
No 47
>PLN02712 arogenate dehydrogenase
Probab=97.25 E-value=0.00044 Score=65.22 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=36.2
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.++.+++|||||+|.||+.+|+.++.+|.+|.+++|+.
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence 567899999999999999999999999999999999874
No 48
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.21 E-value=0.0016 Score=58.77 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=54.8
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE 158 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 158 (204)
.-+.+++|+|+|+|..|+.+|+.|+..|++|.++|+...+. ..++.+.|++-.+ .++.... .+..
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---------~~~~~~~l~~~gi-----~~~~~~~-~~~~ 74 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---------LGEVSNELKELGV-----KLVLGEN-YLDK 74 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---------chHHHHHHHhCCC-----EEEeCCC-ChHH
Confidence 34678999999999999999999999999999999765321 1223333443212 1111110 0122
Q ss_pred cCCCCceEEcccCCCCcHH
Q 045521 159 LFGLENVVLLPHAASGTEE 177 (204)
Q Consensus 159 l~~~~nvilTPH~a~~t~~ 177 (204)
+.+.+-|+.||++.....+
T Consensus 75 ~~~~dlVV~Spgi~~~~p~ 93 (458)
T PRK01710 75 LDGFDVIFKTPSMRIDSPE 93 (458)
T ss_pred hccCCEEEECCCCCCCchH
Confidence 4456789999999865443
No 49
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.20 E-value=0.00058 Score=53.01 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=29.5
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++||+||+|+.|+.+|+.|..-|.+|.+|+|++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 5899999999999999999999999999998753
No 50
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.10 E-value=0.00071 Score=57.95 Aligned_cols=36 Identities=36% Similarity=0.599 Sum_probs=34.2
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.|+.+||+|+|.+|+.-.+.+|||||+|+++|++.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 799999999999999999999999999999999863
No 51
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.98 E-value=0.0026 Score=55.20 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=34.4
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
.|++|+|+|+|..|....+.++++|++|++++++.++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K 202 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 4999999999999999999999999999999998753
No 52
>PLN02256 arogenate dehydrogenase
Probab=96.89 E-value=0.0016 Score=55.78 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=33.4
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+-++++|+|||+|.||+.+|+.++.+|.+|.+++++.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4577899999999999999999999999999998764
No 53
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.89 E-value=0.0028 Score=43.89 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=32.4
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhc-CCEEEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAF-GCFISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~f-g~~V~~~~r 114 (204)
..+++++++|+|.|.+|+.++..+..+ +.+|..++|
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 458899999999999999999999998 678888887
No 54
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.84 E-value=0.0038 Score=55.81 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=34.2
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~ 117 (204)
.+.|++|+|+|+|.||+.+++.|+.+| .+|+.++|+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ 215 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE 215 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 478999999999999999999999999 68999988753
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.83 E-value=0.0022 Score=48.26 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=35.1
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~~ 117 (204)
+++++++.|+|.|.+|+.++..|...|++ |+.++|+..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 68999999999999999999999999998 888898753
No 56
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.79 E-value=0.0022 Score=54.85 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.+++|+|||+|.+|+.+|+.+...|.+|..|+|+..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 467899999999999999999999999999998754
No 57
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.78 E-value=0.0008 Score=60.36 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=27.8
Q ss_pred CCCC-CCcc-ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEE
Q 045521 70 DGEM-GYKL-TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110 (204)
Q Consensus 70 ~w~~-~~~~-~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~ 110 (204)
.|.+ .++. ...|+||||+|||||+||++-|.-++-.|.+|.
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 5665 4433 356999999999999999944444444444444
No 58
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.71 E-value=0.0023 Score=44.81 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=28.6
Q ss_pred EEEEEeCChHHHHHHHHHhhcC---CEEE-EEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFG---CFIS-YRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg---~~V~-~~~r~~ 116 (204)
||||||+|++|+++++.+..-| .+|. +++|++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 7999999999999999999999 8998 447765
No 59
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.69 E-value=0.0098 Score=53.88 Aligned_cols=80 Identities=23% Similarity=0.239 Sum_probs=53.1
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF 160 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~ 160 (204)
+.||+|+|+|+|.-|+.+|+.|+..|++|+.+|..... +.+... .|+++-. .. +...+ +..+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~---------~~~~~~-~l~~~~~---~~--~~~~~--~~~~~ 68 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAV---------EAREVG-ALADAAL---LV--ETEAS--AQRLA 68 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcc---------cchHHH-HHhhcCE---EE--eCCCC--hHHcc
Confidence 57999999999999999999999999999988854321 112222 2544311 11 11111 12244
Q ss_pred CCCceEEcccCCCCcHH
Q 045521 161 GLENVVLLPHAASGTEE 177 (204)
Q Consensus 161 ~~~nvilTPH~a~~t~~ 177 (204)
+.+-||.||++.-...+
T Consensus 69 ~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 69 AFDVVVKSPGISPYRPE 85 (468)
T ss_pred CCCEEEECCCCCCCCHH
Confidence 56789999999976654
No 60
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.65 E-value=0.002 Score=53.51 Aligned_cols=52 Identities=29% Similarity=0.466 Sum_probs=41.5
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcce-----eCHHHHHHHHHc
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL-----VDESELVSALLE 138 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~l-----vd~~aL~~aL~~ 138 (204)
+++|+||.|-|+|++|+.+|+.|...|++|++++.+. |.+ +|.++|.+.-++
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~-------G~i~~~~Gld~~~l~~~~~~ 85 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSS-------GAIYDPDGLDVEELLRIKEE 85 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESS-------EEEEETTEEHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-------eEEEcCCCchHHHHHHHHHH
Confidence 5899999999999999999999999999998875432 223 356777776444
No 61
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.65 E-value=0.0023 Score=54.18 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=30.1
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|||||+|.+|+.+|+.+...|.+|.+|+|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999999875
No 62
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.64 E-value=0.0056 Score=46.37 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.0
Q ss_pred EEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+-|+|.|+++++++++++.+|++|..+|+.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 46899999999999999999999998887654
No 63
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.62 E-value=0.0028 Score=53.67 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=31.3
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++|||||+|.+|+.+|+.+...|.+|.+|+|++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5899999999999999999999999999998753
No 64
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.60 E-value=0.0035 Score=55.16 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.7
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+++|.|+|+|.+|+.+++.++.+|++|.+++++.
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3678899999999999999999999999999998753
No 65
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.60 E-value=0.0043 Score=48.07 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=37.2
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|...+|+|++|.|||-|.+|.+.++.|...|++|..+++..
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 455678999999999999999999999999999998887643
No 66
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.47 E-value=0.0045 Score=52.18 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=30.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|||||+|.||+.+|..++..|.+|.+++++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999998864
No 67
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.44 E-value=0.0061 Score=49.16 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=36.7
Q ss_pred ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
|...+|.||+|.|||.|.+|.+.++.|...|++|+.+++..
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 44568999999999999999999999999999999988754
No 68
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.43 E-value=0.0062 Score=47.43 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
|++|||.|||||+-|++-|.-|+--|.+|++-.|...
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6899999999999999999999999999987665543
No 69
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.39 E-value=0.0051 Score=44.10 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=32.0
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.++|++|.|||.|.+|.+=++.|...|++|+.+++.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 589999999999999999999999999999999886
No 70
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.38 E-value=0.0044 Score=52.79 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=30.7
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|||||+|.+|+.+|+.+...|.+|.+|+|++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 379999999999999999999999999999875
No 71
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.37 E-value=0.012 Score=52.77 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=33.5
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
.+.|++|+|+|.|.||+.+++.++..|+ +|+.++|+.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 3789999999999999999999999998 788888864
No 72
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.37 E-value=0.0054 Score=52.25 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=30.1
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|||||+|++|+.+|+.+...|.+|.+|+|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999875
No 73
>PLN02712 arogenate dehydrogenase
Probab=96.37 E-value=0.0053 Score=58.06 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=33.2
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..-+.++|||||+|.||+.+|+.++.+|.+|.+++++.
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34456799999999999999999999999999998863
No 74
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.35 E-value=0.0076 Score=48.75 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=37.2
Q ss_pred ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
|...+|+|++|.|||-|.+|.+-++.|..+|++|+.+++...
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 344579999999999999999999999999999999988654
No 75
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.32 E-value=0.0095 Score=45.19 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=33.3
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~ 116 (204)
.++.+++++|+|+|.+|+.+++.+...| .+|..++|+.
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3467899999999999999999999886 6788888875
No 76
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.32 E-value=0.02 Score=50.40 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=50.4
Q ss_pred CchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 46 LTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 46 ~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+..++..+-.++...|..+++..+.. .....++|+||| +|.+|+.+|+.++.-|..|.++++..
T Consensus 66 l~~~~~~~i~~~i~~~s~~~q~~~~~~~-----~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 66 VPPDLIEDVLRRVMRESYSSENDKGFKT-----LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHhcccc-----cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 3455567788888888887555544432 112458999999 99999999999999999999999754
No 77
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.28 E-value=0.0068 Score=51.40 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.9
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|||||+|.+|..+|..+...|.+|+.++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 689999999999999999999999999998865
No 78
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.24 E-value=0.0084 Score=54.07 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=53.1
Q ss_pred ccCCCEEEEEeCChHHHH-HHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCC
Q 045521 80 KISGRSVGIIGLGRIGMA-VAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE 158 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~-va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 158 (204)
..+++++.|+|+|.+|.. +|+.|+..|.+|.+.|....+ . .+.|++-.+. ++...+ +..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~------------~-~~~l~~~gi~-----~~~~~~--~~~ 63 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA------------V-TQRLLELGAI-----IFIGHD--AEN 63 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh------------H-HHHHHHCCCE-----EeCCCC--HHH
Confidence 356789999999999999 799999999999999875421 1 1224432222 221111 123
Q ss_pred cCCCCceEEcccCCCCcHH
Q 045521 159 LFGLENVVLLPHAASGTEE 177 (204)
Q Consensus 159 l~~~~nvilTPH~a~~t~~ 177 (204)
+-+.+-|++||++.....+
T Consensus 64 ~~~~d~vv~spgi~~~~~~ 82 (461)
T PRK00421 64 IKDADVVVYSSAIPDDNPE 82 (461)
T ss_pred CCCCCEEEECCCCCCCCHH
Confidence 4456789999999876654
No 79
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.14 E-value=0.041 Score=49.22 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=34.3
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.+|++.|+|.|.+|.++|+.|...|.+|.++++..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999998864
No 80
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.13 E-value=0.015 Score=46.17 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=26.8
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|+|+|.+|.-+|..+...|.+|+++|...
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 589999999999999999999999999999764
No 81
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.13 E-value=0.017 Score=50.63 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CCcceeCHHHHHHHHH
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YKGALVDESELVSALL 137 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~G~lvd~~aL~~aL~ 137 (204)
.+||||||-|..|+.++..++.+|.+|+.+++.+..... +.+..-|.++|.+..+
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~ 62 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAE 62 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHh
Confidence 379999999999999999999999999999886543211 1166678888888776
No 82
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.13 E-value=0.021 Score=47.50 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=30.5
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
--++-|+|.|++++.++++++.+|++|..+|+.+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~ 133 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSRE 133 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCc
Confidence 3699999999999999999999999998877553
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.12 E-value=0.0061 Score=52.33 Aligned_cols=58 Identities=31% Similarity=0.406 Sum_probs=42.5
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCCCC----CCCCcceeCHHHHHHHHHc
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEKPN----TKYKGALVDESELVSALLE 138 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~~~----~~~~G~lvd~~aL~~aL~~ 138 (204)
+.+++|+|+|.|.||+.+++.++..| .+|..++|+.... ..+.+..++.+++.+++..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~ 238 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNE 238 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhc
Confidence 68999999999999999999999876 4688888875421 1122345565666666654
No 84
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.10 E-value=0.0076 Score=51.35 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=30.9
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++|||||+|.+|..+|+.+...|.+|.+|+|++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3799999999999999999999999999998753
No 85
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.08 E-value=0.0093 Score=50.76 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++|||||+|.+|..+|+.+...|.+|.+|+|++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4799999999999999999999999999998754
No 86
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.97 E-value=0.042 Score=43.56 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=34.4
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+..++++++.|+|. |.+|+.+++.+...|.+|..++|+.
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34688999999995 9999999999999999999888864
No 87
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.97 E-value=0.013 Score=46.37 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=28.6
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+|+|||.|.+|+.+|..+...|++|..+++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 699999999999999999999999999998653
No 88
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.96 E-value=0.015 Score=49.10 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=35.7
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEK 117 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~ 117 (204)
+..+.++++.|+|.|.+|+.++..|..+| .+|..++|+..
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 34688999999999999999999999999 68999999753
No 89
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.94 E-value=0.011 Score=51.10 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=31.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.||..+|..+...|++|..+|+++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999999865
No 90
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.0069 Score=49.67 Aligned_cols=52 Identities=31% Similarity=0.396 Sum_probs=40.3
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----CCC-----cceeCHHHHHHH
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----KYK-----GALVDESELVSA 135 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~~~-----G~lvd~~aL~~a 135 (204)
+++.|+|+|+.|+.+|+.|...|..|+.+++...... .+. |.--|++.|.+|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc
Confidence 5799999999999999999999999998887653211 111 666777777766
No 91
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.92 E-value=0.016 Score=45.41 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=47.8
Q ss_pred cccCCCEEEEEeCChH-HHHHHHHHhhcCCEEEEEcCCCCCCC----CCC--------cceeCHHHHHHHHHcCCceEEE
Q 045521 79 TKISGRSVGIIGLGRI-GMAVAKRAEAFGCFISYRSRAEKPNT----KYK--------GALVDESELVSALLEDRLAAAV 145 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~I-G~~va~~~~~fg~~V~~~~r~~~~~~----~~~--------G~lvd~~aL~~aL~~g~i~ga~ 145 (204)
.+|.||++.|+|.|.+ |+.+|+.|+..|++|...+|+..... ..+ ..+++.+.+ +.+ ...
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~----~~~---~vi 112 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMV----KPG---AVV 112 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCceecHHHc----cCC---eEE
Confidence 4699999999999995 99999999999999988888753211 111 347777754 334 467
Q ss_pred eeCCCC
Q 045521 146 LDVFEH 151 (204)
Q Consensus 146 lDV~~~ 151 (204)
+|+--+
T Consensus 113 IDla~p 118 (168)
T cd01080 113 IDVGIN 118 (168)
T ss_pred EEccCC
Confidence 787643
No 92
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.89 E-value=0.01 Score=51.91 Aligned_cols=33 Identities=33% Similarity=0.320 Sum_probs=28.9
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||+|.||..+|+.++..|.+|..+++.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDP 33 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 579999999999999999999998887776654
No 93
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.87 E-value=0.0097 Score=51.86 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=32.7
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
-+.||++.|.|||..|+-+|.+++++|++|++..-.
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvD 241 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVD 241 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecC
Confidence 478999999999999999999999999999886543
No 94
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.86 E-value=0.023 Score=50.27 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.6
Q ss_pred CEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~ 116 (204)
++|.|||.|.||+.+|..|..-| .+|+..||+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 68999999999999999998888 9999999985
No 95
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.79 E-value=0.035 Score=44.95 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=53.3
Q ss_pred CCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHH--hhcCCEEEE-EcCCCCCCCC
Q 045521 45 VLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRA--EAFGCFISY-RSRAEKPNTK 121 (204)
Q Consensus 45 ~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~--~~fg~~V~~-~~r~~~~~~~ 121 (204)
......++|.+..++...|+.. +.. ..++++|+|+|.+|+.+++.+ ...|+++.+ +|+.+.....
T Consensus 58 ~~G~~~~gy~v~~l~~~~~~~l-----------~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~ 125 (213)
T PRK05472 58 EFGKRGVGYNVEELLEFIEKIL-----------GLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT 125 (213)
T ss_pred hcCCCCCCeeHHHHHHHHHHHh-----------CCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence 3446667788888888888732 111 356899999999999999863 467898865 5554322111
Q ss_pred -CCc-ceeCHHHHHHHHHcCCce
Q 045521 122 -YKG-ALVDESELVSALLEDRLA 142 (204)
Q Consensus 122 -~~G-~lvd~~aL~~aL~~g~i~ 142 (204)
..| ++...+++.+.+++.++-
T Consensus 126 ~i~g~~v~~~~~l~~li~~~~iD 148 (213)
T PRK05472 126 KIGGIPVYHIDELEEVVKENDIE 148 (213)
T ss_pred EeCCeEEcCHHHHHHHHHHCCCC
Confidence 111 123445566666655444
No 96
>PRK04148 hypothetical protein; Provisional
Probab=95.75 E-value=0.043 Score=41.48 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEP 153 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP 153 (204)
+++++.+||+| -|..+|..|+..|.+|++.|.++ +++..+.+. .+....-|+|++.+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~-------------~aV~~a~~~-~~~~v~dDlf~p~~ 72 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE-------------KAVEKAKKL-GLNAFVDDLFNPNL 72 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH-------------HHHHHHHHh-CCeEEECcCCCCCH
Confidence 56899999999 99999999999999999998764 454444444 45667889997764
No 97
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.69 E-value=0.034 Score=45.92 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=32.1
Q ss_pred ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.||++.|.|- +.||+++|+.+..-|++|+..+|.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 578999999997 589999999999999999887664
No 98
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.69 E-value=0.015 Score=49.70 Aligned_cols=33 Identities=33% Similarity=0.269 Sum_probs=30.7
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+...|.+|..|++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999874
No 99
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.044 Score=47.94 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
.+||||||=|..|+.++.-++.+|.+|+..++....
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~ 36 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADA 36 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 479999999999999999999999999999986643
No 100
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.65 E-value=0.022 Score=48.59 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~ 116 (204)
..++|+|||+|.||..+++.++..|. +|.+++|+.
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 35789999999999999999988774 899998864
No 101
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.019 Score=48.54 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=30.7
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+...|.+|+.++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 689999999999999999999999999998865
No 102
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.61 E-value=0.02 Score=48.30 Aligned_cols=36 Identities=33% Similarity=0.397 Sum_probs=29.3
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhh--cCCEEE-EEcCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEA--FGCFIS-YRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~--fg~~V~-~~~r~~ 116 (204)
+...+|||||+|+||+.+++.+.. .++++. .++|.+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~ 42 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDP 42 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCH
Confidence 456899999999999999999875 588886 566654
No 103
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.58 E-value=0.075 Score=47.96 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=34.3
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
..+++|.|+|+|.-|..+++.|+..|++|+++|..+.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 44999999999999999999999999999999876544
No 104
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.58 E-value=0.019 Score=48.58 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=30.5
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+..-|.+|+.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 589999999999999999998999999998864
No 105
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.57 E-value=0.018 Score=51.44 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=26.0
Q ss_pred CEEEEEeCChHHHHHHHHHhh-cCCEEEEE
Q 045521 84 RSVGIIGLGRIGMAVAKRAEA-FGCFISYR 112 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~-fg~~V~~~ 112 (204)
.+|||.|||+||+.++|.+.. ++++|+++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaI 115 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAV 115 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEe
Confidence 499999999999999999875 89998874
No 106
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.56 E-value=0.022 Score=46.14 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=29.3
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++++|+|.|+||..+|+++..-|-+|.+-+|..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 589999999999999999999999998775543
No 107
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.51 E-value=0.038 Score=45.44 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=32.3
Q ss_pred ccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.||++.|.|-+ .||+++|+.|..-|++|+..+|.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 4789999999985 79999999999999999887765
No 108
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.045 Score=44.61 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=33.7
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.||++.|.|. |.||+.+|+.+...|++|+..+|+.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999999995 9999999999999999999888864
No 109
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.45 E-value=0.038 Score=44.92 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=32.8
Q ss_pred ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+++||++.|.|.+ .||+++|+.+...|++|+..+|+.
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ 39 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4789999999975 499999999999999999988864
No 110
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.44 E-value=0.058 Score=36.44 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=39.9
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHH---HHHHHHcCCc
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE---LVSALLEDRL 141 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~a---L~~aL~~g~i 141 (204)
++.|||-|.||-++|..++.+|.+|..+.+.+... ...|++. +.+.|++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-----~~~~~~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-----PGFDPDAAKILEEYLRKRGV 55 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-----TTSSHHHHHHHHHHHHHTTE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-----hhcCHHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999888876553 2245444 4556666544
No 111
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.42 E-value=0.038 Score=49.35 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=31.5
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++|+|||+|.+|..+|..|..-|.+|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998654
No 112
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.031 Score=49.96 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=33.8
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.||++.|+|.|.+|..+|+.|...|++|.+.++..
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3679999999999999999999999999999988654
No 113
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.38 E-value=0.029 Score=49.93 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..++|.|+|+|.+|..+|+.|+..|.+|.++|+..
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35789999999999999999999999999998754
No 114
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.36 E-value=0.031 Score=50.90 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=35.3
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.++++++++|+|.|.+|+.++..+...|++|..++|+.
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~ 365 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTK 365 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456789999999999999999999999999998888864
No 115
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.34 E-value=0.033 Score=48.30 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=34.3
Q ss_pred EEEEEeCChHHHHHHHHHhh--------cCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCc
Q 045521 85 SVGIIGLGRIGMAVAKRAEA--------FGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRL 141 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~--------fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i 141 (204)
+|+|+|||+||+.+++.+.. ++.+|.++..+.... +...=+|.+.+.+..++|.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l--~~~~Gldl~~l~~~~~~g~l 64 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSY--YNERGLDIGKIISYKEKGRL 64 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcc--cCCcCCChHHHHHHHhcCcc
Confidence 79999999999999999865 677876654332110 00011455566665554433
No 116
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.33 E-value=0.03 Score=47.03 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=28.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~ 116 (204)
++|+|||+|.+|+.+|+.++.-| .+|++++++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~ 35 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNE 35 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 37999999999999999998666 4788888764
No 117
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.33 E-value=0.029 Score=45.16 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=33.3
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46999999999999999999999999998 67777765
No 118
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.028 Score=47.95 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=30.2
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+..-|.+|+.++++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999998754
No 119
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.30 E-value=0.026 Score=47.97 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.5
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|||||+|++|+.+|+.+..-|.+|.++++++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~ 33 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGP 33 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999998888764
No 120
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.30 E-value=0.029 Score=46.64 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=29.0
Q ss_pred CEEEEEeCChHHHHHHHHHhhcC---CEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFG---CFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg---~~V~~~~r~~ 116 (204)
++|+|||+|.||+.+++.+..-| .+|..++|+.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 57999999999999999998777 6788888864
No 121
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.27 E-value=0.036 Score=46.64 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=29.7
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~ 116 (204)
..++|||||+|++|+.+++.+..-| .+|.+++|+.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~ 40 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN 40 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC
Confidence 4579999999999999999998766 5788888864
No 122
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.039 Score=47.20 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521 78 TTKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA 144 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga 144 (204)
+.++.||+|+|||.| .+|+.+|.+|..-|+.|..+.+......+ .+ ...|+.+- ++.|. .
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~----ik~Ga---i 226 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADW----LKPGA---V 226 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhh----ccCCc---E
Confidence 568999999999996 99999999999999999988654432111 01 34444332 56664 4
Q ss_pred EeeCCCCC-CCCC-CCcC---CCC-----ceEEcccCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045521 145 VLDVFEHE-PQVP-EELF---GLE-----NVVLLPHAASGTEETRKATADIVIENLEACFL 195 (204)
Q Consensus 145 ~lDV~~~E-P~~~-~~l~---~~~-----nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~ 195 (204)
.+||--+. +... ..+. +.+ --.+||=-+|.-.-+..-+.+.+++..+++..
T Consensus 227 VIDvgin~~~~~g~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~ 287 (301)
T PRK14194 227 VIDVGINRIDDDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAH 287 (301)
T ss_pred EEEecccccCCCCCcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 67775332 1000 0111 111 24589877776554444444555554455443
No 123
>PRK06523 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.078 Score=43.38 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=44.4
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHH
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSAL 136 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL 136 (204)
..+++||++.|.|. |.||+++++.+...|++|+..+|....... +.+.+-|++++.+++
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~ 68 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVA 68 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHH
Confidence 34689999999995 899999999999999999988876532211 126677777665443
No 124
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.23 E-value=0.033 Score=50.71 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=32.9
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.|++|.|+|+|.+|...++.|+..|++|.++|+.
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357899999999999999999999999999998864
No 125
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.20 E-value=0.034 Score=44.74 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=33.4
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
..|..++|+|+|+|.+|..+|..|...|. +++.+|+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46899999999999999999999999999 58888765
No 126
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.17 E-value=0.05 Score=44.47 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.4
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999995 9999999999999999999888864
No 127
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.16 E-value=0.028 Score=41.99 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=28.3
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
+.++|.|+|+|.+|..+++.|...|+ ++..+|..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 36899999999999999999998898 57766654
No 128
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.11 E-value=0.036 Score=46.91 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=30.6
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+..-|.+|..|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 689999999999999999999999999998864
No 129
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.11 E-value=0.035 Score=46.15 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=28.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCC----EEEEE-cCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGC----FISYR-SRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~----~V~~~-~r~~ 116 (204)
.+||+||+|++|+.+++.+..-|. +|+++ +|+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~ 38 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNP 38 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCH
Confidence 479999999999999999987776 78777 7754
No 130
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.039 Score=50.31 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=33.6
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.+++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3678999999999999999999999999999988653
No 131
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.038 Score=49.74 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=33.5
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
++.|++|.|+|+|.+|..+|+.|+..|.+|.++|..
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 478999999999999999999999999999999865
No 132
>PRK08818 prephenate dehydrogenase; Provisional
Probab=95.09 E-value=0.039 Score=48.66 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=31.5
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhh-cCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEA-FGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~-fg~~V~~~~r~~ 116 (204)
+.-.||+|||+ |.||+.+|+.++. ++.+|+++|+..
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d 39 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD 39 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 35679999999 9999999999985 699999999853
No 133
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.07 E-value=0.04 Score=47.39 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.++|+|||.|.+|..+|..|..-|.+|..|+|+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3589999999999999999999999999999864
No 134
>PRK06398 aldose dehydrogenase; Validated
Probab=95.04 E-value=0.088 Score=43.34 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=44.9
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~ 137 (204)
+++||++.|.| -|.||+++|+.+..-|++|+..+|+...... +...+-|++++.++++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~ 64 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGID 64 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHH
Confidence 57899999999 4799999999999999999998886543221 2266777777666554
No 135
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.089 Score=42.08 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=43.5
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---------C---CCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---------K---YKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---------~---~~G~lvd~~aL~~aL~ 137 (204)
.+++||+.|.| .|.||+.+++.+..-|.+|+..+|+..+.. . ..+.+-|++++.++++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVD 74 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHH
Confidence 47899999999 499999999999888999999988653210 0 1156667777766555
No 136
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.02 E-value=0.043 Score=49.81 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=34.1
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..+.+++|.|+|+|.+|+.+|+.|...|++|.++|+.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 3578999999999999999999999999999999975
No 137
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.97 E-value=0.13 Score=44.78 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=33.5
Q ss_pred CEEEEEeCChHHHHHHHHHhh--------cC--CEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521 84 RSVGIIGLGRIGMAVAKRAEA--------FG--CFISYRSRAEKPNTKYKGALVDESELVSALLE 138 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~--------fg--~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~ 138 (204)
-+|+|+|||++|+.+++.+.. +| .+|.++..+.... |.-.=+|.+.+.+..++
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~--~~~~Gid~~~l~~~~~~ 65 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTI--WLPEDIDLREAKEVKEN 65 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccc--cCCCCCChHHHHHhhhc
Confidence 489999999999999998865 56 6776654322110 00011556666665555
No 138
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.96 E-value=0.083 Score=49.24 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=46.3
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C-----CCcceeCHHHHHHHHHc
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K-----YKGALVDESELVSALLE 138 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~-----~~G~lvd~~aL~~aL~~ 138 (204)
..+..|||||||-|..|+.++..++.+|.+|+.+++.+.... . +.++.-|.++|.+..++
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~ 83 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKR 83 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999887654211 1 11666777777766554
No 139
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.96 E-value=0.043 Score=44.56 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=29.4
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+||| .|++|+.+++.+..-|.+|..++|+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 3799997 99999999999998899998888864
No 140
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.93 E-value=0.034 Score=42.86 Aligned_cols=29 Identities=34% Similarity=0.373 Sum_probs=24.6
Q ss_pred EEEEEeCChHHHHHHHHHh-hcCCEEEEEc
Q 045521 85 SVGIIGLGRIGMAVAKRAE-AFGCFISYRS 113 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~-~fg~~V~~~~ 113 (204)
+|||-|||+|||.+++.+. .-.++|.+++
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn 31 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN 31 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence 7999999999999999986 5667777664
No 141
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.91 E-value=0.074 Score=46.18 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=42.3
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CCcceeCHHHHHHHHHc
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YKGALVDESELVSALLE 138 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~G~lvd~~aL~~aL~~ 138 (204)
||||||-|..|+.+++.++.+|.+|+.++..+..... +.+..-|.+++.+..+.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~ 60 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAES 60 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhh
Confidence 6999999999999999999999999999876532211 12666788888777664
No 142
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.88 E-value=0.08 Score=47.29 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.2
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+++.|+|+|.+|+.+++.|...|.+|.++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 479999999999999999999999999998864
No 143
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.87 E-value=0.15 Score=46.82 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=33.5
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
...+.+|.|+|.|.||...+..++.+|++|..+|+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999998888754
No 144
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.86 E-value=0.059 Score=45.70 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=34.7
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK 117 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~ 117 (204)
..+.+++|.|+|.|..|++++..|...|+ +|..++|+..
T Consensus 123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ 162 (284)
T PRK12549 123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPA 162 (284)
T ss_pred cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 35788999999999999999999999998 6889999753
No 145
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.84 E-value=0.037 Score=46.56 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=30.2
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+...|.+|+.+++++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 589999999999999999999999999998754
No 146
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.83 E-value=0.041 Score=50.02 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=31.4
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.+|||||+|.+|+.+|+.|..-|.+|.+|+|++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999764
No 147
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.83 E-value=0.063 Score=44.57 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=30.8
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+++|.||+|+.|..++++|.--|-+|++||+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~ 33 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQ 33 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCH
Confidence 478999999999999999999999999999865
No 148
>PLN00203 glutamyl-tRNA reductase
Probab=94.82 E-value=0.043 Score=50.44 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=33.4
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
++.+++|+|||.|.+|+.+++.|...|+ +|+.++|+.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 3789999999999999999999999997 688888874
No 149
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.82 E-value=0.041 Score=46.69 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++|||||.|.+|..+|..+...|.+|+.+|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999988754
No 150
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.79 E-value=0.046 Score=44.72 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=31.2
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r 114 (204)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999999999998 4555554
No 151
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.76 E-value=0.041 Score=50.30 Aligned_cols=33 Identities=24% Similarity=0.113 Sum_probs=30.5
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|||||.|.+|..+|..+..-|.+|..||+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 589999999999999999998899999999864
No 152
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.76 E-value=0.051 Score=46.31 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=30.0
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+..-|.+|..++|++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999998864
No 153
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=94.72 E-value=0.044 Score=46.61 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=32.6
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
.+||+||+|..|+.+|++|..-|..|.+|+|++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence 48999999999999999999999999999998755
No 154
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.70 E-value=0.033 Score=49.19 Aligned_cols=63 Identities=27% Similarity=0.359 Sum_probs=47.2
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC------CCcceeCHHH-HHHHHHcCCceEEEeeC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK------YKGALVDESE-LVSALLEDRLAAAVLDV 148 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~------~~G~lvd~~a-L~~aL~~g~i~ga~lDV 148 (204)
.|+||+|+|-||.-+|-.+..-|.+|+++|-..+.... +.-+ ++.+. |.++..+|+++ |..|.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr-aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR-ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce-EecCh
Confidence 89999999999999999999999999999875532211 1122 34455 66788899997 66554
No 155
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.69 E-value=0.078 Score=43.21 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=32.8
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.+|++.|.|- |.||+.+|+.+..-|++|+..+|+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 67899999995 8999999999999999999988865
No 156
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.68 E-value=0.068 Score=45.44 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=62.2
Q ss_pred ccccCCCEEEEEeCChH-HHHHHHHHhhcCCEEEEEcCCCCCCC------CCC------cceeCHHHHHHHHHcCCceEE
Q 045521 78 TTKISGRSVGIIGLGRI-GMAVAKRAEAFGCFISYRSRAEKPNT------KYK------GALVDESELVSALLEDRLAAA 144 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~I-G~~va~~~~~fg~~V~~~~r~~~~~~------~~~------G~lvd~~aL~~aL~~g~i~ga 144 (204)
+.++.||++.|||.|.| |+-++.+|...|+.|+.+....+... +.. -.+++. +.++.|. .
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~----~~ik~ga---v 225 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTA----DMVKPGA---T 225 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCH----HHcCCCC---E
Confidence 45789999999999999 99999999999999987654332111 100 344554 5566664 4
Q ss_pred EeeCCCCC-C---CCCC-Cc--CCCCceEEcccCCCCcHHHHHHHHHHHHH
Q 045521 145 VLDVFEHE-P---QVPE-EL--FGLENVVLLPHAASGTEETRKATADIVIE 188 (204)
Q Consensus 145 ~lDV~~~E-P---~~~~-~l--~~~~nvilTPH~a~~t~~~~~~~~~~~~~ 188 (204)
.+||--+. + +..+ .+ ...---.+||=-+|--.-+..-+.+.+++
T Consensus 226 VIDVGin~~~~gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~ 276 (285)
T PRK14189 226 VIDVGMNRDDAGKLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIE 276 (285)
T ss_pred EEEccccccCCCCeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHH
Confidence 67775432 1 1011 11 11113468998777655443344344433
No 157
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.67 E-value=0.1 Score=42.55 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=34.0
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.+|++.|.|- |.||+.+++.+...|++|+..+|+.
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~ 43 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV 43 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999995 9999999999999999999888764
No 158
>PRK08655 prephenate dehydrogenase; Provisional
Probab=94.66 E-value=0.051 Score=48.89 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.0
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+||| +|.||+.+|+.++..|.+|.+++|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4799997 99999999999999999999998864
No 159
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.11 Score=42.96 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=33.0
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+++|+.|...|++|+..+|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999996 6899999999999999999888764
No 160
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.086 Score=43.07 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=33.4
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+++++.|...|.+|+..+|+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL 43 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999996 8999999999999999999888764
No 161
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.64 E-value=0.051 Score=45.90 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=30.3
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+..-|.+|..++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 589999999999999999998899999998764
No 162
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.067 Score=48.41 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=53.7
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~ 157 (204)
+..+.+++|.|+|.|.+|.++|+.|+..|.+|.++++.... ..+.+.+.|++..+. ++..+...
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~---------~~~~~~~~l~~~gv~-----~~~~~~~~-- 74 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDE---------RHRALAAILEALGAT-----VRLGPGPT-- 74 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh---------hhHHHHHHHHHcCCE-----EEECCCcc--
Confidence 34678999999999999999999999999999998865321 112344455543222 21111100
Q ss_pred CcCCCCceEEcccCCCCcHH
Q 045521 158 ELFGLENVVLLPHAASGTEE 177 (204)
Q Consensus 158 ~l~~~~nvilTPH~a~~t~~ 177 (204)
.....+-||++|-+-..+..
T Consensus 75 ~~~~~D~Vv~s~Gi~~~~~~ 94 (480)
T PRK01438 75 LPEDTDLVVTSPGWRPDAPL 94 (480)
T ss_pred ccCCCCEEEECCCcCCCCHH
Confidence 12234667788877666654
No 163
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.62 E-value=0.062 Score=45.98 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.++|+|||.|.||..+|.+|...|.+|..+.|..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999998887753
No 164
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.069 Score=47.85 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=53.0
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF 160 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~ 160 (204)
+.++++.|+|.|.+|..+|+.|...|.+|.++|....+. ..+.|++- +.++.++..+. +..-+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~------------~~~~l~~~---~~gi~~~~g~~-~~~~~~ 66 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPE------------RVAQIGKM---FDGLVFYTGRL-KDALDN 66 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCch------------hHHHHhhc---cCCcEEEeCCC-CHHHHh
Confidence 678999999999999999999999999999988754321 12234331 01122222211 011123
Q ss_pred CCCceEEcccCCCCcHHH
Q 045521 161 GLENVVLLPHAASGTEET 178 (204)
Q Consensus 161 ~~~nvilTPH~a~~t~~~ 178 (204)
+.+-|+.||++.....+.
T Consensus 67 ~~d~vv~spgi~~~~p~~ 84 (445)
T PRK04308 67 GFDILALSPGISERQPDI 84 (445)
T ss_pred CCCEEEECCCCCCCCHHH
Confidence 567899999999766543
No 165
>PLN02858 fructose-bisphosphate aldolase
Probab=94.56 E-value=0.042 Score=56.03 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=32.8
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
..++||+||+|++|..+|+.|...|.+|.+|+|++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~ 358 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKP 358 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 358999999999999999999999999999998753
No 166
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=94.55 E-value=0.12 Score=45.17 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=47.0
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C-----CCcceeCHHHHHHHHHcCCceEE
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K-----YKGALVDESELVSALLEDRLAAA 144 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~-----~~G~lvd~~aL~~aL~~g~i~ga 144 (204)
+|||+|-|..|+.+++.++.+|.+|+.+++.+.... . +.+...|.++|.+..++.++-+.
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v 66 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYI 66 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEE
Confidence 589999999999999999999999999888654211 1 11566789999998887666543
No 167
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.53 E-value=0.042 Score=48.88 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=30.8
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++|+|||+|.+|..+|..+..-|.+|++++++..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 3799999999999999999999999999998653
No 168
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.53 E-value=0.057 Score=46.98 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=32.9
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46999999999999999999999999998 67777764
No 169
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.49 E-value=0.089 Score=43.36 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=32.8
Q ss_pred ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. +.||+++|+.+..-|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 478999999996 7999999999999999998887653
No 170
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.49 E-value=0.074 Score=45.19 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=34.2
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~ 116 (204)
..+.+|++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus 122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 357899999999999999999999999997 98888875
No 171
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.47 E-value=0.077 Score=45.15 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=63.0
Q ss_pred ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521 78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA 144 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga 144 (204)
+.+|+||++.|||.|. +|+-+|.+|...|++|+.+.++...... .+ ..+|..+ .++.| ..
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~----~vk~g---av 225 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKD----VVKEG---AV 225 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHH----HcCCC---cE
Confidence 4579999999999999 9999999999999999776654322111 11 3356664 35666 46
Q ss_pred EeeCCCCCCCCCCCcC--------CCCceEEcccCCCCcHHHHHHHHHHHH
Q 045521 145 VLDVFEHEPQVPEELF--------GLENVVLLPHAASGTEETRKATADIVI 187 (204)
Q Consensus 145 ~lDV~~~EP~~~~~l~--------~~~nvilTPH~a~~t~~~~~~~~~~~~ 187 (204)
.+||--+. .....+. .----.+||=-+|.-.-+...+.+.++
T Consensus 226 VIDvGi~~-~~~gkl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~ 275 (286)
T PRK14175 226 IIDVGNTP-DENGKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTL 275 (286)
T ss_pred EEEcCCCc-CCCCCeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHH
Confidence 78886543 1111111 011245899877776544433333333
No 172
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.46 E-value=0.031 Score=41.84 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=28.4
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEE-EcCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-RSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~-~~r~~ 116 (204)
-...+|||||.|++|+.+++.|+.-|.+|.. ++|+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3467999999999999999999999999865 46653
No 173
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.46 E-value=0.042 Score=50.19 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=30.8
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+||+||+|..|+.+|+.+..-|.+|.+|+|+..
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~ 40 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 40 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHH
Confidence 699999999999999999999999999999753
No 174
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.44 E-value=0.085 Score=44.23 Aligned_cols=38 Identities=26% Similarity=0.221 Sum_probs=33.8
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
...+++++|+|.|.+|+.++..+...|.+|..++|+..
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~ 151 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVS 151 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35689999999999999999999999999999988753
No 175
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=94.43 E-value=0.062 Score=45.55 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=27.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
-++|+|+|+|.||+.+|+.++.-|..|..+++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~ 34 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGR 34 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEee
Confidence 47899999999999999999998888744443
No 176
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.42 E-value=0.075 Score=41.35 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=31.1
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..+...+|.|+|.|++|+..++.|+++|++|..++..
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4577899999999999999999999999999988765
No 177
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.41 E-value=0.094 Score=45.16 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=48.9
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCc
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEEL 159 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l 159 (204)
++++|+|||.|+||..+|-.+...|. ++..+|..... ..|...|.++....+ . +..... +- ...+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~---~~g~~~Dl~~~~~~~-~-~~~i~~-~~-------~~~~ 71 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK---AEGDAMDLSHAVPFT-S-PTKIYA-GD-------YSDC 71 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch---hHHHHHHHHhhcccc-C-CeEEEe-CC-------HHHh
Confidence 57899999999999999999987777 78888875322 114444444444222 1 121111 11 1246
Q ss_pred CCCCceEEcccCC
Q 045521 160 FGLENVVLLPHAA 172 (204)
Q Consensus 160 ~~~~nvilTPH~a 172 (204)
.+.+=||+|....
T Consensus 72 ~~adivIitag~~ 84 (315)
T PRK00066 72 KDADLVVITAGAP 84 (315)
T ss_pred CCCCEEEEecCCC
Confidence 6677788887664
No 178
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.38 E-value=0.13 Score=42.35 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=33.6
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+++|++.|.|. |.||+++|+.+...|++|+..+|+.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999995 9999999999999999999988865
No 179
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.36 E-value=0.068 Score=45.02 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=28.0
Q ss_pred CEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~ 116 (204)
.+|+|||+|++|+.+++.+..-| .+|..++|+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~ 38 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK 38 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc
Confidence 47999999999999999998776 5788887753
No 180
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.33 E-value=0.18 Score=41.31 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=34.1
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCE---EEEEcCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCF---ISYRSRA 115 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~---V~~~~r~ 115 (204)
+.+++++++.|+|.|..|+.+|+.+...|++ |..++|+
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 3468999999999999999999999999985 8888887
No 181
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.1 Score=42.78 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=32.6
Q ss_pred ccCCCEEEEEeC-C-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-G-RIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G-~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.|- | .||+++++.+...|++|+..+|..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999996 6 699999999999999998887754
No 182
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.32 E-value=0.065 Score=45.16 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=29.5
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|+|.|.+|..+|..|..-|.+|..++|+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 369999999999999999998899999888743
No 183
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.31 E-value=0.059 Score=46.53 Aligned_cols=31 Identities=32% Similarity=0.302 Sum_probs=26.9
Q ss_pred CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSR 114 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r 114 (204)
-+|||=|||+|||.+++.+..- .|+|+++..
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 3799999999999999999865 499988765
No 184
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.27 E-value=0.061 Score=51.35 Aligned_cols=33 Identities=33% Similarity=0.338 Sum_probs=29.7
Q ss_pred CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~ 116 (204)
++|+|||+|.+|+.+++.++..| .+|++++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~ 38 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRA 38 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECCh
Confidence 78999999999999999999887 5799898864
No 185
>PRK07680 late competence protein ComER; Validated
Probab=94.23 E-value=0.082 Score=44.28 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=27.7
Q ss_pred EEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~ 116 (204)
+|||||+|++|+.+++.+..-| .+|.+++|+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~ 37 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP 37 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH
Confidence 6999999999999999998777 3688888864
No 186
>PRK06125 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.18 Score=41.23 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=33.2
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~ 41 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA 41 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999997 7899999999999999999888764
No 187
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.17 E-value=0.22 Score=44.53 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=44.1
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCCCCC----CCC-cceeCHHHHHHHHHc
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEKPNT----KYK-GALVDESELVSALLE 138 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~~~~----~~~-G~lvd~~aL~~aL~~ 138 (204)
.+.|+++.|+|.|.+|+.+++.|...|. +|+.++|+..... .+. +..+..+++.+.|.+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~ 242 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK 242 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc
Confidence 5889999999999999999999999996 6888888754211 122 455666666666654
No 188
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.14 E-value=0.092 Score=44.23 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=28.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCC----EEEEEcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGC----FISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~----~V~~~~r~~ 116 (204)
.++|||||+|++|+.+++-+..-|. +|++++|+.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~ 39 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV 39 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH
Confidence 3589999999999999999976553 688888764
No 189
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.14 Score=42.12 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=34.0
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..++||++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~ 42 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE 42 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3588999999996 6899999999999999999888864
No 190
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.13 E-value=0.15 Score=47.89 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=53.9
Q ss_pred CcEEEeCC-CCCchhHHHHHHHHHHHHHhhHHHhcCCCC--CCccccccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEE
Q 045521 36 GIQVTNTP-DVLTDDVADAAIGLTLAVLRRFVRSEDGEM--GYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISY 111 (204)
Q Consensus 36 gI~v~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~--~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~ 111 (204)
+-++.+-. -.....+||.++-|=|.|+| |.- +.. -..|++.+|.|+|+|.+|..+|+.|.+.|.. ++.
T Consensus 296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------WRllP~l~-~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~Itl 367 (664)
T TIGR01381 296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------WRLHPDLQ-LERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITF 367 (664)
T ss_pred CceEechhhhcCHHHHHHHHHHHHHHHHh-------hhcCChhh-HHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 34555533 45578899999999999887 552 111 2568999999999999999999999999985 555
Q ss_pred EcC
Q 045521 112 RSR 114 (204)
Q Consensus 112 ~~r 114 (204)
+|.
T Consensus 368 VD~ 370 (664)
T TIGR01381 368 VDN 370 (664)
T ss_pred EcC
Confidence 543
No 191
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.13 E-value=0.055 Score=49.15 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=30.2
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.|||||+|.+|+.+|+.+..-|.+|.+|+|++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~ 33 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPE 33 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 389999999999999999999999999998753
No 192
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.12 E-value=0.099 Score=45.50 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=33.8
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
.++.++++.|||.|.+|+.+++.|..-|. +|+..+|+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35899999999999999999999999995 588888874
No 193
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.11 E-value=0.077 Score=41.06 Aligned_cols=62 Identities=24% Similarity=0.287 Sum_probs=47.2
Q ss_pred EEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---C---CCcceeCHHHHHHHHHcCCceEEEeeCCC
Q 045521 86 VGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---K---YKGALVDESELVSALLEDRLAAAVLDVFE 150 (204)
Q Consensus 86 vGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~---~~G~lvd~~aL~~aL~~g~i~ga~lDV~~ 150 (204)
|.|+| .|.+|+.+++.|..-|.+|....|++.+.. . ..|.+-|.+++.++|+.-. +.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d---~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGAD---AVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSS---EEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcc---hhhhhhh
Confidence 57899 599999999999999999999998865422 1 1188889999999998422 4455553
No 194
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.11 E-value=0.16 Score=41.26 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred ccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 76 ~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+...+|.||+|.|||-|.+|.+=++.+...|++|+.++++.
T Consensus 5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 44568999999999999999999999999999999998875
No 195
>PRK08589 short chain dehydrogenase; Validated
Probab=94.07 E-value=0.17 Score=41.98 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=32.9
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.||++.|.|. |.||+++|+.+..-|++|+..+|+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 478999999996 889999999999999999988876
No 196
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.05 E-value=0.074 Score=45.79 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=29.9
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..|..-|.+|..++|+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999998899999988753
No 197
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.13 Score=44.37 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=34.0
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.+|++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~ 41 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE 41 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3578999999997 8999999999999999999888864
No 198
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.99 E-value=0.16 Score=41.28 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=33.8
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.+.+|++.|.|. |.||+.+++.+..-|++|+..+|+..
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999995 89999999999999999999888653
No 199
>PRK08303 short chain dehydrogenase; Provisional
Probab=93.98 E-value=0.34 Score=41.25 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=33.9
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
...+.||++.|.|- +.||+++|+.+..-|++|+..+|+.
T Consensus 3 ~~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 3 MKPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 34689999999997 4799999999999999998887763
No 200
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=93.94 E-value=0.078 Score=46.16 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=32.2
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.-++|||||||+.|+-+|+.+..-|..++..||+.
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd 85 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD 85 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch
Confidence 35689999999999999999999999999999875
No 201
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.14 Score=41.70 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~ 36 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDA 36 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 678999996 8999999999999999999888764
No 202
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.92 E-value=0.087 Score=45.88 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=32.9
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
..|..++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 77777753
No 203
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.11 Score=47.05 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.||+|+|+|+|.-|+++++.|+. |++|+.+|..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 58999999999999999999996 9999998843
No 204
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.88 E-value=0.11 Score=46.61 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=31.8
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++-+++|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 46699999999999999999999999999998754
No 205
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=93.88 E-value=0.27 Score=43.19 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=47.7
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCC-C-----CCcceeCHHHHHHHHHcCCceE
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT-K-----YKGALVDESELVSALLEDRLAA 143 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~-----~~G~lvd~~aL~~aL~~g~i~g 143 (204)
..++|+|+|-|..|+.+++.++.+|.+|+.++..+.... . +.....|.++|.+.+++.++-+
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~ 78 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDY 78 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCE
Confidence 456999999999999999999999999988877653211 1 1155678899999888766653
No 206
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.87 E-value=0.21 Score=44.59 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=32.7
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+..+++.|+|+|.+|+.+++.|...|.+|+.+++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 457899999999999999999999999999998765
No 207
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.86 E-value=0.13 Score=41.57 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=33.5
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+++|+++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 378999999997 9999999999999999998888764
No 208
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.85 E-value=0.11 Score=43.08 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=31.1
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r 114 (204)
..|++++|.|+|+|.+|..+++.|...|. ++..+|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46999999999999999999999998887 4665554
No 209
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=93.85 E-value=0.064 Score=46.02 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.2
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
+.||.+-|.|||.+|+-.|..||+||++|+...-
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEi 245 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEI 245 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEecc
Confidence 6899999999999999999999999999987543
No 210
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.84 E-value=0.12 Score=43.02 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=28.0
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~ 116 (204)
...+|||||+|++|+.+++.+..-+ -+|++++|+.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~ 40 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSK 40 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCCh
Confidence 4568999999999999999997544 2488877754
No 211
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.76 E-value=0.12 Score=38.79 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=27.7
Q ss_pred EEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
+|.|+|+|.+|.++++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 577777643
No 212
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.74 E-value=0.31 Score=39.77 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=41.1
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC--------C-CCCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN--------T-KYKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~--------~-~~~G~lvd~~aL~~aL~ 137 (204)
.+.||++.|.| .|.||+++|+.+...|++|+...++.... . .+...+-|++++.++++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~ 71 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKE 71 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHH
Confidence 46899999999 59999999999999999997765432210 0 11155666776665554
No 213
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.17 Score=42.73 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=34.9
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+..+.++++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45789999999995 9999999999999999999888864
No 214
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.74 E-value=0.16 Score=45.08 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=28.1
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+|+|||+|.+|..+|..+. .|.+|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHH
Confidence 7999999999999997776 4999999998753
No 215
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.73 E-value=0.11 Score=46.49 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=33.5
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~ 117 (204)
+|.++++.|||+|.+|+-+|+.|..-|. +|+..+|+..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~e 213 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLE 213 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHH
Confidence 4899999999999999999999999995 5777888754
No 216
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.70 E-value=0.32 Score=40.26 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=30.7
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r 114 (204)
..|++++|.|+|+|.+|..+|+.|...|.. +..+|+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 468999999999999999999999988874 555554
No 217
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.70 E-value=0.095 Score=43.49 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=26.0
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCE---EEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCF---ISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~---V~~~~r~~ 116 (204)
+|||||+|++|+.+++.+..-|.. |.+++|+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~ 36 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNA 36 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCH
Confidence 799999999999999999766643 46677754
No 218
>PRK09242 tropinone reductase; Provisional
Probab=93.68 E-value=0.18 Score=41.24 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=33.2
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA 43 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999995 8999999999999999999888764
No 219
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.65 E-value=0.16 Score=42.83 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=37.7
Q ss_pred HhcCCCCCCccccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 67 RSEDGEMGYKLTTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 67 ~~~~w~~~~~~~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.+.|... ...++.||++.|.|. |.||+++|+.+..-|++|+..+|..
T Consensus 2 ~~~~~~~~--~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~ 50 (306)
T PRK06197 2 KMTKWTAA--DIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL 50 (306)
T ss_pred CCCCCCcc--ccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34566531 124689999999995 9999999999999999998887753
No 220
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=93.65 E-value=0.33 Score=39.83 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.5
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL~ 137 (204)
.+.+|++.|.| .|.||+++++.|..-|++|+..+++...... +...+-|++++.++++
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 69 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVA 69 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHH
Confidence 57899999999 5899999999999999999888876543211 1266777777766554
No 221
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.65 E-value=0.14 Score=43.45 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=61.5
Q ss_pred ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCC----CCCC--------cceeCHHHHHHHHHcCCceEE
Q 045521 78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPN----TKYK--------GALVDESELVSALLEDRLAAA 144 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~----~~~~--------G~lvd~~aL~~aL~~g~i~ga 144 (204)
+.++.||++.|+|.|. +|+.++.+|...|++|+.+.+..+.. ..++ ...|+.+ .++.|. .
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~----~lk~ga---v 226 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKD----WIKQGA---V 226 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHH----HcCCCC---E
Confidence 4578999999999998 99999999999999998776643211 0111 2345543 356664 4
Q ss_pred EeeCCCCC-C--CCCC---CcCCCCceEEcccCCCCcHHHHHHHHHHHH
Q 045521 145 VLDVFEHE-P--QVPE---ELFGLENVVLLPHAASGTEETRKATADIVI 187 (204)
Q Consensus 145 ~lDV~~~E-P--~~~~---~l~~~~nvilTPH~a~~t~~~~~~~~~~~~ 187 (204)
.+||-.+. . ...+ +-...-.-.+||=-+|.-.-+...+.+.++
T Consensus 227 ViDvg~n~~~~~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~ 275 (283)
T PRK14192 227 VVDAGFHPRDGGGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTV 275 (283)
T ss_pred EEEEEEeecCCCCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHH
Confidence 67775331 1 1101 111112345799888776544444433333
No 222
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.65 E-value=0.25 Score=40.79 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=31.1
Q ss_pred ccCCCEEEEEe---CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIG---LGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG---~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.||++.|.| -+.||+++|+.+...|++|+...+.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV 41 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence 37899999999 4589999999999999999876553
No 223
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.63 E-value=0.1 Score=43.81 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=24.2
Q ss_pred CEEEEEeCChHHHHHHHHHhh---cCCEEEE-EcCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEA---FGCFISY-RSRA 115 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~---fg~~V~~-~~r~ 115 (204)
++|||||||.||+.+++.+.. .++++.+ ++|.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~ 38 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA 38 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 689999999999999998864 2356544 4443
No 224
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.62 E-value=0.18 Score=43.18 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=28.6
Q ss_pred CEEEEEeCChHHHHHHHHHhhcC--CEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFG--CFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg--~~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+...| -+|..+|+..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 37999999999999999998878 5788888864
No 225
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.61 E-value=0.15 Score=45.59 Aligned_cols=37 Identities=27% Similarity=0.263 Sum_probs=33.3
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.++++.|+|+|.+|...++.|+..|.+|.++|...
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3568999999999999999999999999999988654
No 226
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.60 E-value=0.11 Score=47.65 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
=++|||||.|..|+.+|..+..-|.+|..|+++..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 36899999999999999999999999999998753
No 227
>PRK08264 short chain dehydrogenase; Validated
Probab=93.59 E-value=0.23 Score=39.97 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=46.0
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCC-EEEEEcCCCCCCCCC-------CcceeCHHHHHHHHHc
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGC-FISYRSRAEKPNTKY-------KGALVDESELVSALLE 138 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~-~V~~~~r~~~~~~~~-------~G~lvd~~aL~~aL~~ 138 (204)
++.++++.|.| .|.||+++|+.|..-|. +|+..+|+..+...+ .+.+-|.+.+.+.++.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 46889999999 59999999999999999 998888865432211 1677788888777764
No 228
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.59 E-value=0.56 Score=43.12 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=33.1
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+.++.|+|+|.+|...+..++.+|++|..++++.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4568999999999999999999999999998887653
No 229
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.58 E-value=0.18 Score=41.64 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=33.1
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.|. |.||+.+++.+..-|++|+..+|+.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~ 41 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP 41 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 368999999996 8999999999999999999888764
No 230
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.21 Score=40.87 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=33.0
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.| .|.||+++++.+..-|++|+..+|..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999999 48999999999999999999888754
No 231
>PRK08328 hypothetical protein; Provisional
Probab=93.54 E-value=0.12 Score=42.51 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=31.2
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r 114 (204)
..|++++|.|+|+|.+|..+++.|...|.. +..+|.
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 468999999999999999999999999984 555554
No 232
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=93.51 E-value=0.27 Score=40.34 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=32.3
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..+.||++.|.|. +.||+++|+.+..-|++|+...++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4689999999996 889999999999999999876543
No 233
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.51 E-value=0.24 Score=41.31 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=32.0
Q ss_pred cCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521 81 ISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 81 l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
+.||++.|.|.+ .||+++|+.|..-|++|+..+|+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 789999999997 69999999999999999887764
No 234
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.46 E-value=0.097 Score=43.00 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=25.7
Q ss_pred CEEEEEeCChHHHHHHHHHhh--cCCEE-EEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEA--FGCFI-SYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~--fg~~V-~~~~r~~ 116 (204)
.+|||||||.||+.+.+.++. ...+. ..||++.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ 36 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDE 36 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCH
Confidence 379999999999999999973 45554 5567654
No 235
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.46 E-value=0.14 Score=38.59 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=28.4
Q ss_pred EEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
|.|+|.|.||..+|.+|+.-|.+|..++|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999998999999988853
No 236
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.45 E-value=0.15 Score=39.26 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=29.8
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|+|+|.|+.|.++|..+..-|-+|..|+|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999863
No 237
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=93.43 E-value=0.34 Score=39.61 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=32.2
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
++.||++.|.|. |.||+++|+.+...|++|++.++.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~ 43 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIV 43 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCc
Confidence 588999999995 689999999999999999888764
No 238
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.42 E-value=0.29 Score=40.43 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=30.5
Q ss_pred ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcC
Q 045521 80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r 114 (204)
.+.||++.|.|. +.||+++|+.+...|++|+..++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYV 40 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence 378999999994 68999999999999999987654
No 239
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.36 E-value=0.16 Score=43.02 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=33.9
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~ 117 (204)
.++++++.|||.|..|++++..|...|+ +|..++|+..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ 160 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD 160 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 4789999999999999999999999998 5888898753
No 240
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.36 E-value=0.15 Score=43.39 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=43.0
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C---CCcceeCHHHHHHHHHc
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K---YKGALVDESELVSALLE 138 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~---~~G~lvd~~aL~~aL~~ 138 (204)
++|.|.| .|.||+.+++.|..-|.+|.+.+|+..+.. . +.|.+-|.++|.++++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g 64 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKG 64 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCC
Confidence 4789999 699999999999988999998888643211 1 11778888888888874
No 241
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.2 Score=42.21 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=33.9
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE 43 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999995 8899999999999999998888754
No 242
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.35 E-value=0.098 Score=44.76 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=31.1
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
-|.||||+|||||+-|++=|.-|+--|.+|++=-|
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr 49 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLR 49 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEec
Confidence 58999999999999999999999999999865433
No 243
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.33 E-value=0.22 Score=40.55 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=33.4
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+.+++.+..-|++|+..+|+.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~ 45 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA 45 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 488999999995 8999999999998999999988864
No 244
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.32 E-value=0.13 Score=47.17 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=31.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++|||||.|.+|+.+|..+..-|.+|..+|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999888999999998753
No 245
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.45 Score=38.83 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=33.0
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.| -|.||+++|+.+...|++|+..+|+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~ 42 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT 42 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999 57999999999999999998888754
No 246
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.28 E-value=0.13 Score=43.16 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.2
Q ss_pred CEEEEEeCChHHHHHHHHHhhc-CCEEEE
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF-GCFISY 111 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~ 111 (204)
.+|||+|+|+||+.+++.+... ++++.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~ 30 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDW 30 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEE
Confidence 4899999999999999998765 566643
No 247
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.23 E-value=0.19 Score=40.43 Aligned_cols=38 Identities=37% Similarity=0.520 Sum_probs=33.7
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++++|++.|.|. |.||+.+++.+..-|++|+..+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 378999999996 78999999999999999999888653
No 248
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.22 E-value=0.3 Score=40.30 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.1
Q ss_pred cccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..++||++.|.|.+ .||+++|+.+..-|++|+..+|+
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~ 43 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS 43 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence 35789999999996 49999999999999999877664
No 249
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.22 E-value=0.19 Score=41.29 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=37.0
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++...+++|++|.|||-|.++.+=++.|..+|++|+.+++...
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 3445578899999999999999999999999999999988653
No 250
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.21 E-value=0.31 Score=40.49 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=31.5
Q ss_pred cCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521 81 ISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 81 l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
+.||++.|.|.+ .||+++|+.+..-|++|+..+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999986 69999999999999999877665
No 251
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.21 E-value=0.32 Score=40.41 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=41.3
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-----CC---CCcceeCHHHHHHHHH
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-----TK---YKGALVDESELVSALL 137 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-----~~---~~G~lvd~~aL~~aL~ 137 (204)
.+|++.|.|. |.||+++|+.+..-|.+|+..+|+.... .. +.+.+-|++++.++++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~ 67 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVA 67 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHH
Confidence 3689999997 9999999999999999999988865321 01 1266667776655544
No 252
>PRK06182 short chain dehydrogenase; Validated
Probab=93.20 E-value=0.35 Score=39.98 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=41.0
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC--------CCCcceeCHHHHHHHHH
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT--------KYKGALVDESELVSALL 137 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~--------~~~G~lvd~~aL~~aL~ 137 (204)
.+|++.|.|. |.||+++++.+..-|++|+..+|+..... .+.+.+-|++++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~ 66 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVD 66 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHH
Confidence 5789999995 89999999999999999998887643210 01156666666655554
No 253
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=93.18 E-value=0.33 Score=40.00 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=30.4
Q ss_pred ccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcC
Q 045521 80 KISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 80 ~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r 114 (204)
++.||++.|.|. +.||+++|+.+..-|++|+...+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~ 40 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYL 40 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence 478999999997 48999999999999999976543
No 254
>PRK07577 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.39 Score=38.42 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC---CCcceeCHHHHHHHHH
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK---YKGALVDESELVSALL 137 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~---~~G~lvd~~aL~~aL~ 137 (204)
.+|++.|.|. |.||+.+++.+..-|++|+..+|+...... +.+.+-|++++.++++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~ 61 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDFPGELFACDLADIEQTAATLA 61 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccccCceEEEeeCCCHHHHHHHHH
Confidence 5789999996 899999999999999999998886543211 1266677776655444
No 255
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.14 E-value=0.18 Score=44.03 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=32.9
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHh-hcCC-EEEEEcCCC
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAE-AFGC-FISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~-~fg~-~V~~~~r~~ 116 (204)
+.++++|+|.|+|. |.||+.+++.+. ..|. +++.++|+.
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~ 191 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ 191 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence 45799999999998 899999999996 4664 788888864
No 256
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.13 E-value=0.19 Score=40.57 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=34.0
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..|++|++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 3578999999995 8999999999999999999998865
No 257
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.11 E-value=0.24 Score=40.76 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=32.9
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.++++.|.|- |.||+++++.|..-|++|+..+|+.
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE 44 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999995 5799999999999999999988865
No 258
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.11 E-value=0.18 Score=36.18 Aligned_cols=31 Identities=35% Similarity=0.452 Sum_probs=26.2
Q ss_pred EEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 86 vGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
|-|+|+|.+|+.+++.|+..+.+|..+++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 5699999999999999999776898888754
No 259
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.11 E-value=0.14 Score=41.54 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=31.9
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
..|+.++|.|+|+|.+|..+|+.|...|.. +..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999999988885 6666653
No 260
>PLN02858 fructose-bisphosphate aldolase
Probab=93.08 E-value=0.12 Score=52.84 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+.++||+||+|.+|..+|+.|..-|.+|.+|+|++.
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~ 38 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTP 38 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 467899999999999999999999999999999754
No 261
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.08 E-value=0.18 Score=46.47 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=34.1
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|+|.|.+|++++..|...|++|+.++|+.
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5789999999999999999999999999999888864
No 262
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.03 E-value=0.21 Score=40.44 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.3
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+.+|+.+..-|++|+..+|+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 478999999996 8999999999999999999888754
No 263
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.00 E-value=0.17 Score=38.89 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=23.6
Q ss_pred EEEEEeCChHHHHHHHHHh-hcCCEEEEE
Q 045521 85 SVGIIGLGRIGMAVAKRAE-AFGCFISYR 112 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~-~fg~~V~~~ 112 (204)
+|||+|+|+||+.+++.+. .-++++.+.
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai 30 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAI 30 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEe
Confidence 7999999999999999886 457887654
No 264
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.98 E-value=0.29 Score=39.36 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=32.5
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEE-cCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYR-SRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~-~r~~ 116 (204)
++.+|++.|.|. |.||+.+++.+..-|++|+.. +|+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~ 40 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE 40 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 478899999995 999999999999899999887 7754
No 265
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.98 E-value=0.28 Score=40.60 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=33.9
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+++|++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~ 44 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ 44 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3678999999996 8999999999999999999888764
No 266
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.97 E-value=0.29 Score=39.85 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=33.2
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~ 43 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA 43 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 57899999999 58999999999999999999888764
No 267
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=92.96 E-value=0.13 Score=44.02 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=35.2
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
..+.++||.||+|..|..++.-|-.-|.+|++|+|+...
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k 70 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDK 70 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHH
Confidence 446899999999999999999999999999999998653
No 268
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.95 E-value=0.25 Score=39.59 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=43.0
Q ss_pred cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC----------CC---CCcceeCHHHHHHHHH
Q 045521 81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN----------TK---YKGALVDESELVSALL 137 (204)
Q Consensus 81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~----------~~---~~G~lvd~~aL~~aL~ 137 (204)
+.++++.|.| .|.||+.+++.+..-|.+|+..+|.+... .. +.+.+-|++++.++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHH
Confidence 5689999998 49999999999998899999988865321 00 1166777777766665
No 269
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.95 E-value=0.15 Score=43.03 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.5
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
++|+|+|.|.+|..+|..|..-|.+|..++|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3799999999999999999988999988887
No 270
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=92.93 E-value=0.12 Score=44.99 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=23.8
Q ss_pred EEEEeCChHHHHHHHHHhh-cCCEEEEEcC
Q 045521 86 VGIIGLGRIGMAVAKRAEA-FGCFISYRSR 114 (204)
Q Consensus 86 vGIvG~G~IG~~va~~~~~-fg~~V~~~~r 114 (204)
|||+|||+||+.+++.+.. =+|+|.++..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD 30 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK 30 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec
Confidence 6999999999999999764 4688877654
No 271
>PRK08278 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.34 Score=40.19 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=33.4
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.+.||++.|.| .|.||+.+|+.+...|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 46899999999 589999999999999999988887643
No 272
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.90 E-value=0.17 Score=48.92 Aligned_cols=75 Identities=23% Similarity=0.136 Sum_probs=50.1
Q ss_pred CEEEEEeCChHHHHH-HHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCC
Q 045521 84 RSVGIIGLGRIGMAV-AKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGL 162 (204)
Q Consensus 84 ~tvGIvG~G~IG~~v-a~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~ 162 (204)
+++.|+|+|.+|... |+.|+..|.+|.+.|....+ ..+.|++- ++.++...+ ...+-..
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~-------------~~~~L~~~-----gi~~~~g~~--~~~~~~~ 64 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGK-------------TVEKLKAK-----GARFFLGHQ--EEHVPED 64 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCCh-------------HHHHHHHC-----CCEEeCCCC--HHHcCCC
Confidence 369999999999998 99999999999999875421 12234432 222332221 1223345
Q ss_pred CceEEcccCCCCcHHH
Q 045521 163 ENVVLLPHAASGTEET 178 (204)
Q Consensus 163 ~nvilTPH~a~~t~~~ 178 (204)
+-|++||.+.....+.
T Consensus 65 d~vV~SpgI~~~~p~~ 80 (809)
T PRK14573 65 AVVVYSSSISKDNVEY 80 (809)
T ss_pred CEEEECCCcCCCCHHH
Confidence 7799999998776653
No 273
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=92.90 E-value=0.15 Score=42.70 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=26.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhc--CCEEE-EEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF--GCFIS-YRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~-~~~r~~ 116 (204)
.+|||||+|.||+.+++.+... ++++. .++++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~ 37 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNL 37 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCH
Confidence 4799999999999999988764 57754 466654
No 274
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.3 Score=39.79 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---------C--C-CCcceeCHHHHHHHHHc
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---------T--K-YKGALVDESELVSALLE 138 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~--~-~~G~lvd~~aL~~aL~~ 138 (204)
.+.++++.|.|. |.||+.+++.|...|++|+..+|+.... . . ..+.+-|++++.+++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence 478999999995 9999999999999999999888764311 0 0 12677788887776654
No 275
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.86 E-value=0.33 Score=41.85 Aligned_cols=59 Identities=22% Similarity=0.168 Sum_probs=45.5
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC----------C---CCcceeCHHHHHHHHHcC
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT----------K---YKGALVDESELVSALLED 139 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~----------~---~~G~lvd~~aL~~aL~~g 139 (204)
++||+|.|.|. |-||+.+++.|..-|.+|++.+|...... . +.+.+-|.+++.++++..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence 46899999994 99999999999999999998887543211 0 116777888888877753
No 276
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.85 E-value=0.8 Score=39.32 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=50.4
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCC----CC---CC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHE----PQ---VP 156 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~E----P~---~~ 156 (204)
++|.|+|.|.||..++-+|...|..|+.+.|.++ ++++++.-+. +.-...+ +. ..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~---------------~~~l~~~GL~---i~~~~~~~~~~~~~~~~~ 62 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR---------------LEALKKKGLR---IEDEGGNFTTPVVAATDA 62 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH---------------HHHHHhCCeE---EecCCCccccccccccCh
Confidence 4899999999999999999999977887777532 4567666332 2211111 11 11
Q ss_pred CCcCCCCceEEcccCCCCcHHHHHHH
Q 045521 157 EELFGLENVVLLPHAASGTEETRKAT 182 (204)
Q Consensus 157 ~~l~~~~nvilTPH~a~~t~~~~~~~ 182 (204)
..+-..+.+|+|+- ++.++++...+
T Consensus 63 ~~~~~~Dlviv~vK-a~q~~~al~~l 87 (307)
T COG1893 63 EALGPADLVIVTVK-AYQLEEALPSL 87 (307)
T ss_pred hhcCCCCEEEEEec-cccHHHHHHHh
Confidence 23456677777776 44555544443
No 277
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.85 E-value=0.26 Score=41.05 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.0
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.||++.|.| .|.||+++|+.|..-|++|+..++..
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~ 40 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK 40 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999998 78999999999999999998887754
No 278
>PLN02253 xanthoxin dehydrogenase
Probab=92.81 E-value=0.27 Score=40.71 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=33.4
Q ss_pred cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|.| .|.||+++++.+..-|++|+..++..
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~ 52 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD 52 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 468899999999 47999999999999999998887753
No 279
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.78 E-value=0.16 Score=44.26 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=23.8
Q ss_pred CEEEEEeCChHHHHHHHHHhh-cCCEEEEE
Q 045521 84 RSVGIIGLGRIGMAVAKRAEA-FGCFISYR 112 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~-fg~~V~~~ 112 (204)
.+|||+|+|+||+++++.+.. =+|++.+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav 31 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGV 31 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEE
Confidence 379999999999999998864 46787654
No 280
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.78 E-value=0.29 Score=40.79 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=29.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|++.|-|.|.||+++|+.+. -|.+|+..+|+.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~ 34 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNE 34 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCH
Confidence 688999999999999999996 799999888754
No 281
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.75 E-value=0.26 Score=42.17 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=34.8
Q ss_pred ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEE-cCCC
Q 045521 78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYR-SRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~-~r~~ 116 (204)
+.++.||+|+||| .|.+|+.+|.+|..-|+.|..+ +|+.
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~ 193 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR 193 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence 4578999999999 9999999999999999999988 4654
No 282
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.73 E-value=0.49 Score=38.03 Aligned_cols=34 Identities=29% Similarity=0.262 Sum_probs=30.2
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 578999996 7899999999999999999888765
No 283
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.72 E-value=0.4 Score=39.17 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=33.1
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.++.||++.|.|. |.||+.+++.+...|++|+..+|.
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3589999999995 899999999999999999888775
No 284
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.72 E-value=0.31 Score=39.68 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=33.1
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.+|++.|.|. |.||+++++.+..-|.+|+..+|+.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~ 40 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ 40 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999995 7999999999999999999888764
No 285
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.71 E-value=0.22 Score=40.28 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=43.2
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------------CCCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-------------KYKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------------~~~G~lvd~~aL~~aL~ 137 (204)
++.++++.|.|. |.||+++++.+...|++|+..+|+..... .+.+.+-|++.+.++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 468999999995 89999999999999999999988753210 01156666666655544
No 286
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=92.70 E-value=0.2 Score=44.98 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=48.4
Q ss_pred EEEEeCChHHHH-HHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcCCCCc
Q 045521 86 VGIIGLGRIGMA-VAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLEN 164 (204)
Q Consensus 86 vGIvG~G~IG~~-va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~~~~n 164 (204)
+-++|.|.+|.. +|+.|+..|.+|.++|....+ ..+.|++-.+. ...+ +.. ..+...+-
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~-------------~~~~l~~~gi~-~~~g-~~~-----~~~~~~d~ 61 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENA-------------TTKRLEALGIP-IYIG-HSA-----ENLDDADV 61 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcch-------------HHHHHHHCcCE-EeCC-CCH-----HHCCCCCE
Confidence 678999999998 999999999999999875421 22334442222 1111 221 12334678
Q ss_pred eEEcccCCCCcHHH
Q 045521 165 VVLLPHAASGTEET 178 (204)
Q Consensus 165 vilTPH~a~~t~~~ 178 (204)
|++||++.....+.
T Consensus 62 vV~spgi~~~~p~~ 75 (448)
T TIGR01082 62 VVVSAAIKDDNPEI 75 (448)
T ss_pred EEECCCCCCCCHHH
Confidence 99999998766543
No 287
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.68 E-value=0.34 Score=39.28 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=43.5
Q ss_pred cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----------C---CCcceeCHHHHHHHHH
Q 045521 81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----------K---YKGALVDESELVSALL 137 (204)
Q Consensus 81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----------~---~~G~lvd~~aL~~aL~ 137 (204)
+++|++.|.| .|.||+.+++.+...|.+|+..+|...+.. . +.+.+-|++++.++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 5789999999 699999999999999999998887653210 1 1266777777766655
No 288
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.67 E-value=0.16 Score=40.73 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=32.4
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
..|++++|.|+|+|.+|.++++.|...|+. +..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 569999999999999999999999999985 6666654
No 289
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.66 E-value=0.16 Score=43.33 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=29.4
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
++|.|+|.|.||..+|-+|..-|.+|..+.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999888885
No 290
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.64 E-value=0.19 Score=44.85 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=29.7
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++.|+|+|.+|..+|+.|+..|.+|.+.|....
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 378999999999999999999999999987543
No 291
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.61 E-value=0.41 Score=39.88 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=32.0
Q ss_pred cccCCCEEEEEeC---ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGL---GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~---G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..+.||++.|.|- +.||+++|+.|..-|++|+...|.
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~ 45 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG 45 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence 3478999999998 479999999999999999876654
No 292
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.61 E-value=0.17 Score=40.59 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=31.7
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
..|++++|.|+|+|.+|.++++.|...|.+ +..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468999999999999999999999988886 6566543
No 293
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.61 E-value=0.2 Score=42.94 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=29.3
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|+|+|.|.+|..+|..|..-|.+|..++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999888853
No 294
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.56 E-value=0.42 Score=38.97 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=43.3
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC------C-----CCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT------K-----YKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~-----~~G~lvd~~aL~~aL~ 137 (204)
.+.+|++.|.| .|.||+++|+.|...|++|+..+|...... . +.+.+-|++++.++++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVA 72 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 37789999999 499999999999999999998887653210 0 1156667777666555
No 295
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.52 E-value=0.26 Score=40.22 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=43.3
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC------CC---CCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN------TK---YKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~------~~---~~G~lvd~~aL~~aL~ 137 (204)
.+.|+++.|.|. |.||+.+++.+...|++|+..+|+.... .. +...+-|++++.++++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFD 71 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHH
Confidence 478999999997 9999999999999999998888764321 00 1156666666655554
No 296
>PRK06194 hypothetical protein; Provisional
Probab=92.50 E-value=0.36 Score=40.08 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=42.7
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-----------CC---CCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-----------TK---YKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----------~~---~~G~lvd~~aL~~aL~ 137 (204)
++.++++.|.| .|.||+.+++.|..-|++|+..+|..... .. +.+.+-|.+++.++++
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46789999999 48999999999999999999888754210 00 1266667776665554
No 297
>PRK07856 short chain dehydrogenase; Provisional
Probab=92.50 E-value=0.46 Score=38.66 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=43.3
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---CC---CCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---TK---YKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---~~---~~G~lvd~~aL~~aL~ 137 (204)
++.||++.|.|. |.||+++++.|..-|.+|+..+|+.... .. +.+.+-|++++.++++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 67 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVD 67 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHH
Confidence 478999999995 7899999999999999999888865321 01 1266667777665554
No 298
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.44 E-value=0.33 Score=39.09 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=45.2
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC------C---CCcceeCHHHHHHHHHc
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT------K---YKGALVDESELVSALLE 138 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~------~---~~G~lvd~~aL~~aL~~ 138 (204)
..+.++++.|.|. |.||+.+++.+..-|.+|+..+|+..... . +.+.+-|++.+.++++.
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 74 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAA 74 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHH
Confidence 3578999999997 89999999999999999999988653210 0 11566677777776664
No 299
>PRK06153 hypothetical protein; Provisional
Probab=92.43 E-value=0.17 Score=44.87 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.6
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR 114 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r 114 (204)
.|++++|+|||+|.+|..++..|...|. ++..+|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 6899999999999999999999998887 5666654
No 300
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.28 Score=40.43 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=34.1
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.++.+|++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4688999999997 8999999999999999999888764
No 301
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.34 E-value=0.37 Score=39.56 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=33.5
Q ss_pred CCCEEEEEeC--ChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 82 SGRSVGIIGL--GRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 82 ~g~tvGIvG~--G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
.-|.|.|.|+ |.||.++|+.+..-|+.|++..|+..+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~ 44 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEP 44 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccch
Confidence 4589999998 999999999999999999999998755
No 302
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.33 E-value=0.24 Score=41.31 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=31.0
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~~ 116 (204)
.|++|.|+|.|.||...++.++.+|++ |+..+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 689999999999999999999999997 77776543
No 303
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.30 E-value=0.41 Score=40.29 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=42.4
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----CC---CcceeCHHHHHHHHHc
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT-----KY---KGALVDESELVSALLE 138 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~~---~G~lvd~~aL~~aL~~ 138 (204)
+++.|.| .|.||+.+++.|..-|.+|...+|+..... .. .+.+-|.+++.++++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~ 64 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAG 64 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhC
Confidence 4789998 599999999999999999999888654321 11 1777788888887764
No 304
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=92.28 E-value=0.66 Score=38.85 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=49.8
Q ss_pred CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------CCcceeCHHHHHHHHHcCCceEEEeeCCC
Q 045521 84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------YKGALVDESELVSALLEDRLAAAVLDVFE 150 (204)
Q Consensus 84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------~~G~lvd~~aL~~aL~~g~i~ga~lDV~~ 150 (204)
++|.|+|- |. |+.+++.|...|.+|++..++...... ......|.++|.+.+++.++. +.+|...
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~-~VIDAtH 74 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSID-ILVDATH 74 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCC-EEEEcCC
Confidence 46788886 77 999999999999999887766532211 114557899999999998887 8889764
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.26 E-value=0.25 Score=42.63 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=31.5
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
..|++|.|+|.|.||+..++.++..|++|+..++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 3689999999999999999999999999998876
No 306
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.24 E-value=0.64 Score=38.01 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=32.9
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.||++.|.| -|.||+++|+.+..-|++|+..+|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 57899999999 58999999999999999998887753
No 307
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.22 E-value=0.51 Score=38.78 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---C---CCcceeCHHHHHHHHHc
Q 045521 82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---K---YKGALVDESELVSALLE 138 (204)
Q Consensus 82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---~---~~G~lvd~~aL~~aL~~ 138 (204)
.++++.|.| .|.||+++++.|..-|++|+..+|...... . +.+.+-|.+++.++++.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 66 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDE 66 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHH
Confidence 467899999 589999999999999999999888643221 1 22778888888777764
No 308
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.16 E-value=0.3 Score=39.33 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=33.4
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.| .|.||+.+++.+..-|.+|+..+|+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999999 79999999999999999999988864
No 309
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.15 E-value=0.25 Score=41.91 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEE-EEEcC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFI-SYRSR 114 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V-~~~~r 114 (204)
.++++.|+|.|.||...++.++.+|+++ ...++
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 5789999999999999999999999985 44544
No 310
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.14 E-value=0.44 Score=39.66 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=42.2
Q ss_pred EEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC--C---CCcceeCHHHHHHHHH
Q 045521 85 SVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT--K---YKGALVDESELVSALL 137 (204)
Q Consensus 85 tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~--~---~~G~lvd~~aL~~aL~ 137 (204)
+|.|.|. |.||+.+++.|..-|.+|.+.+|++.... . ..+..-|.+.|.++++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~ 59 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFS 59 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHh
Confidence 4678886 99999999999988999999988764321 1 2278888999999986
No 311
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.10 E-value=0.37 Score=38.85 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+|++.|.|- |.||+.+++.|..-|++|+..+|+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999995 9999999999999999999998865
No 312
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.07 E-value=0.39 Score=41.39 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=33.6
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.++++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~ 42 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE 42 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3578999999995 8999999999999999998888764
No 313
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.07 E-value=0.41 Score=45.08 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
...|-|+|+|++|+.+++.|+..|.+++..|..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDP 433 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCH
Confidence 4689999999999999999999999998888764
No 314
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.07 E-value=0.34 Score=44.87 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=30.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+-|+|+|++|+.+++.++..|.+|+..|..+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 578899999999999999999999999988764
No 315
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.03 E-value=0.32 Score=44.05 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=31.9
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
+++.|||-|-||-++|..++.||++|..+.+..+-
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 68999999999999999999999999988876653
No 316
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=92.03 E-value=0.27 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhhc-CCEEEE-EcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAF-GCFISY-RSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~f-g~~V~~-~~r~~ 116 (204)
.-+|||+|+|+||+.+++.+... ++++.+ ++++.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 36899999999999999999765 799865 57663
No 317
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.33 Score=39.57 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=34.0
Q ss_pred cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.+|.|+++.|.| .|.||+.+|+.+...|++|+..+|...
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 358999999999 579999999999999999988877653
No 318
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=92.01 E-value=0.67 Score=37.91 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=32.0
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+++|++.|.| -|.||+++|+.+...|++|+...|+
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 58899999999 5889999999999999999877664
No 319
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.34 Score=39.16 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=43.6
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC------------C---CCCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN------------T---KYKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~------------~---~~~G~lvd~~aL~~aL~ 137 (204)
.+.+|++.|.|. |.||+.+++.+..-|.+|+..+|+..+. . .+.+.+-|.+++.++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 478899999995 9999999999999999998877754211 0 01267778877766655
No 320
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.00 E-value=0.31 Score=39.85 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcC---CE-EEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFG---CF-ISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg---~~-V~~~~r~ 115 (204)
..++|+|||.|++|+.+++.+..-+ .+ ++.++|+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 4678999999999999999886544 33 6666654
No 321
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.00 E-value=0.93 Score=42.50 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
...+-|+|+|++|+.+++.|+..|.+++..|..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4579999999999999999999999999988754
No 322
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.99 E-value=0.26 Score=40.59 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=30.7
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r 114 (204)
..|++++|.|+|+|.+|..+++.|...|. +++.+|.
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 35899999999999999999999988887 5666654
No 323
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.94 E-value=0.25 Score=42.63 Aligned_cols=35 Identities=37% Similarity=0.495 Sum_probs=31.6
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
.|+|+.|.|+|.+|.+++.-+++.|+ +|+++|-.+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~ 227 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINP 227 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCH
Confidence 58999999999999999999999998 688887654
No 324
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=91.90 E-value=0.19 Score=45.04 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.8
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+|||||+|.+|.-+|..+.. |.+|++||+..
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~ 38 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNK 38 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCH
Confidence 689999999999999999876 79999998764
No 325
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.88 E-value=0.27 Score=42.25 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=31.1
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
..|++|.|.|.|.+|+..+++++..|+ +|++.++++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~ 204 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP 204 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 368999999999999999999999999 577776543
No 326
>PRK09186 flagellin modification protein A; Provisional
Probab=91.85 E-value=0.33 Score=39.43 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=43.2
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---------------CCC-CcceeCHHHHHHHHH
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---------------TKY-KGALVDESELVSALL 137 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---------------~~~-~G~lvd~~aL~~aL~ 137 (204)
+.||++.|.|. |.||+.+|+.|..-|++|+..+|+.... ..+ .+.+-|.+++.++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLS 75 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHH
Confidence 57899999995 8999999999999999999888764321 011 266667777766655
No 327
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.83 E-value=0.39 Score=37.65 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=32.1
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.++.||+|.|||-|+.|-.++..|...|-+|..+.|++
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 46889999999999999999999999999998888875
No 328
>PRK05717 oxidoreductase; Validated
Probab=91.81 E-value=0.36 Score=39.42 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=33.6
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|.|- |.||+.+|+.+..-|++|+..+++.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4688999999995 8999999999999999998887654
No 329
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.78 E-value=0.34 Score=39.88 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=33.0
Q ss_pred cccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|.|.+ .||+++|+.+..-|++|+..+|..
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 35789999999975 799999999999999998777653
No 330
>PRK12744 short chain dehydrogenase; Provisional
Probab=91.75 E-value=0.7 Score=37.70 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=30.1
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
.+.+|++.|.| .|.||+.+|+.+...|++|+...+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 47899999999 689999999999999999665543
No 331
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=91.74 E-value=0.26 Score=44.63 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=34.5
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.|+|+-|-|+|++|+..++++...|.+|+.++.+.
T Consensus 247 ~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~ 284 (514)
T KOG2250|consen 247 KGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSK 284 (514)
T ss_pred CCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCc
Confidence 46789999999999999999999999999999887654
No 332
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.74 E-value=0.32 Score=45.07 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.3
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.-.|++|.|||.|.+|...|..|+..|.+|+.+++..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999888654
No 333
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.68 E-value=0.28 Score=43.26 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=31.9
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r 114 (204)
..|++++|.|+|+|.+|..+++.|...|. ++..+|+
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~ 73 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDD 73 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 46999999999999999999999999998 6666665
No 334
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.68 E-value=0.29 Score=44.28 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=37.0
Q ss_pred CccccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 75 ~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|...+|+||+|.|||-|.++.+=++.|..+|++|..+++..
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~ 45 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAF 45 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 345568999999999999999999999999999999998754
No 335
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=91.67 E-value=0.48 Score=39.34 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=50.1
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHE 152 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~E 152 (204)
.+.+|++.|=|. ..||.++|+.+..-|.+|+...|+... .++|.+.+.+++.....+||.+.+
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~dr----------L~~la~~~~~~~~~~~~~DVtD~~ 66 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREER----------LEALADEIGAGAALALALDVTDRA 66 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHH----------HHHHHHhhccCceEEEeeccCCHH
Confidence 467899999996 579999999999999999988887432 356666666667777888888764
No 336
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.67 E-value=0.24 Score=43.58 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.3
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36899999999999999999999999998 57666654
No 337
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.66 E-value=0.51 Score=38.80 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=32.9
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.|. |.||+++++.+...|++|+..+|+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~ 44 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ 44 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 578999999995 7999999999999999998887764
No 338
>PLN02740 Alcohol dehydrogenase-like
Probab=91.66 E-value=0.31 Score=42.61 Aligned_cols=34 Identities=44% Similarity=0.549 Sum_probs=30.6
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 58999999999999999999999999 58877654
No 339
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.64 E-value=0.35 Score=41.11 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=64.2
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA 144 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga 144 (204)
+.++.||+++|||. |-+|+-+|.+|..-|+.|..+....+...+ .+ .+.|+.+- ++.|. .
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~----ik~Ga---v 225 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEF----VKEGA---V 225 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHH----ccCCc---E
Confidence 56799999999999 999999999999999999887332211000 11 44455432 66664 3
Q ss_pred EeeCCCCC-C---CCCC-CcCCC--CceEEcccCCCCcHHHHHHHHHHHHHHHHHH
Q 045521 145 VLDVFEHE-P---QVPE-ELFGL--ENVVLLPHAASGTEETRKATADIVIENLEAC 193 (204)
Q Consensus 145 ~lDV~~~E-P---~~~~-~l~~~--~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~ 193 (204)
.+||--+. + +..+ .+-.. ---.+||=-+|--.-+..-+.+.+++..+++
T Consensus 226 VIDvgin~~~~gkl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 281 (284)
T PRK14179 226 VIDVGMNRDENGKLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRS 281 (284)
T ss_pred EEEecceecCCCCeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 56765332 1 1011 11111 1235899877776544444445454444444
No 340
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.63 E-value=0.54 Score=38.96 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=39.2
Q ss_pred EEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcC
Q 045521 85 SVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLED 139 (204)
Q Consensus 85 tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g 139 (204)
+|.|+| .|.||+.+++.|..-|.+|...+|.. +.+-|.+++.+++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~-------~d~~~~~~~~~~~~~~ 49 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQ-------LDLTDPEALERLLRAI 49 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcc-------cCCCCHHHHHHHHHhC
Confidence 477889 59999999999998999999888863 5667777887777764
No 341
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.60 E-value=0.15 Score=44.81 Aligned_cols=57 Identities=30% Similarity=0.459 Sum_probs=36.0
Q ss_pred EEEEeCChHHHHHHHHHhhcC-C-EEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCC
Q 045521 86 VGIIGLGRIGMAVAKRAEAFG-C-FISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHE 152 (204)
Q Consensus 86 vGIvG~G~IG~~va~~~~~fg-~-~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~E 152 (204)
|+|+|.|.+|+.+++.|...+ . +|+..+|+.... +.+.+.+...++....+|+.+.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~----------~~~~~~~~~~~~~~~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKA----------ERLAEKLLGDRVEAVQVDVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHH----------HHHHT--TTTTEEEEE--TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHH----------HHHHhhccccceeEEEEecCCHH
Confidence 689999999999999997655 4 898888875321 22333334566777777776544
No 342
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.59 E-value=0.33 Score=41.63 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.4
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.|.+|.|.|.|.+|+..++.++.+|++|++.+++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~ 199 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA 199 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 58999999999999999999999999998876653
No 343
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.59 E-value=0.33 Score=40.98 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=30.9
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r 114 (204)
..|++++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 46899999999999999999999998884 5666654
No 344
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=91.57 E-value=0.72 Score=37.30 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=44.6
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCC-----CCcceeCHHHHHHHHHc
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTK-----YKGALVDESELVSALLE 138 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~-----~~G~lvd~~aL~~aL~~ 138 (204)
.++.+|++.|.|. |.||+.+++.+..-|.+|+..+|....... +...+-|++.+.+++++
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 69 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQR 69 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 3588999999995 789999999999999999988876511111 22666777777666653
No 345
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.54 E-value=0.35 Score=41.30 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=29.3
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCC--EEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~--~V~~~~r~~~ 117 (204)
++|+|||.|.+|+.+|..|...|. +|..+|+...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 489999999999999999988884 7888888653
No 346
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.54 E-value=0.33 Score=41.79 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=31.5
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.|.+|.|.|.|.||...++.++..|.+|++.++++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 48999999999999999999999999998876643
No 347
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.54 E-value=0.44 Score=38.55 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=33.4
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.|. |.||+.+++.+...|++|+..+|..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468899999996 9999999999999999999988864
No 348
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.52 E-value=0.32 Score=35.92 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=27.0
Q ss_pred EEEEEeC-ChHHHHHHHHHhh-cCCEEE-EEcCCC
Q 045521 85 SVGIIGL-GRIGMAVAKRAEA-FGCFIS-YRSRAE 116 (204)
Q Consensus 85 tvGIvG~-G~IG~~va~~~~~-fg~~V~-~~~r~~ 116 (204)
+|+|+|+ |++|+.+++.+.. =++++. ++++..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 7999999 9999999999987 778864 556655
No 349
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.50 E-value=0.68 Score=38.25 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+|++.|.| .|.||+.+++.+..-|++|+..+|+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~ 37 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP 37 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH
Confidence 578999999 58999999999999999999888764
No 350
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.49 E-value=0.41 Score=39.28 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=32.4
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.+|++.|.|. |.||+.+++.|..-|++|+..+|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67999999995 7899999999999999999888764
No 351
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.47 E-value=0.39 Score=41.75 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=30.5
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.|++|.|.|.|.||+.+++.++.+|++|+..+.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6899999999999999999999999998776543
No 352
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.46 E-value=0.31 Score=42.67 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.9
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r 114 (204)
..|++++|.|+|+|.+|..+++.|...|.. +..+|.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~ 60 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDD 60 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 468999999999999999999999988884 555554
No 353
>PRK08324 short chain dehydrogenase; Validated
Probab=91.41 E-value=0.44 Score=45.25 Aligned_cols=39 Identities=31% Similarity=0.425 Sum_probs=34.7
Q ss_pred ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
...+.||++.|.| .|.||+.+++.+...|++|+..+|+.
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~ 456 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE 456 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH
Confidence 3457899999999 59999999999999999999988865
No 354
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.40 E-value=0.25 Score=42.78 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=22.8
Q ss_pred EEEEEeCChHHHHHHHHHhhcC----CEEEEE
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFG----CFISYR 112 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg----~~V~~~ 112 (204)
+|||+|||+||+.+.+.+...+ ++|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 5899999999999999987543 677654
No 355
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.39 E-value=0.36 Score=42.05 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=30.7
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
.|.+|.|.|.|.||+..+.+++.+|+ +|+..+++
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~ 219 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDIN 219 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 58999999999999999999999999 78877654
No 356
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=91.39 E-value=0.17 Score=42.72 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=27.3
Q ss_pred EEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 88 IIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 88 IvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
|||+|.+|..+|+.+...|.+|.+|+|+..
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~ 30 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPD 30 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 589999999999999999999999998753
No 357
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.37 E-value=0.47 Score=44.19 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=32.1
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
-.|+++.|.|. |.||+++++.|...|++|....|..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 47899999995 9999999999999999998887754
No 358
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.36 E-value=0.38 Score=42.84 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=27.9
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
+|.|+|+|..|..+|+.|+ .|.+|.+.|..
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 6899999999999999999 99999999854
No 359
>PRK06180 short chain dehydrogenase; Provisional
Probab=91.35 E-value=0.29 Score=40.62 Aligned_cols=56 Identities=21% Similarity=0.152 Sum_probs=42.3
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----------CCCcceeCHHHHHHHHH
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-----------KYKGALVDESELVSALL 137 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----------~~~G~lvd~~aL~~aL~ 137 (204)
.++++.|.|. |.||+++++.|..-|++|+..+|+..... .+.+.+-|++++.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~ 70 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVA 70 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHH
Confidence 4788999995 89999999999999999999888643210 01266777777776665
No 360
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.32 E-value=0.43 Score=38.23 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=33.4
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++.||++.|.| .|.||+.+++.|..-|++|+..+|...
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 40 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK 40 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47899999999 588999999999999999998887653
No 361
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=91.31 E-value=0.38 Score=40.31 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=61.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCC---------EEEEEcCCCCCCC--CCC----------------cceeCHHHHHHH
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGC---------FISYRSRAEKPNT--KYK----------------GALVDESELVSA 135 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~---------~V~~~~r~~~~~~--~~~----------------G~lvd~~aL~~a 135 (204)
.-.|.++|+|.||+++.+.+.+|.- +|++.+....... +|. |.....+||++.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~alsLdaLia~ 82 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGSALSLDALIAK 82 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCCcccHHHHHHH
Confidence 3468999999999999988876643 3444443322111 110 777779999999
Q ss_pred HHcCCceEEEeeCCCCCCCCCC--CcCCCCceEEcccCCCCc
Q 045521 136 LLEDRLAAAVLDVFEHEPQVPE--ELFGLENVVLLPHAASGT 175 (204)
Q Consensus 136 L~~g~i~ga~lDV~~~EP~~~~--~l~~~~nvilTPH~a~~t 175 (204)
|.....--+..|-...+-.... .+.+..-.|.||.--..|
T Consensus 83 L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafs 124 (364)
T KOG0455|consen 83 LLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFS 124 (364)
T ss_pred HcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCccccc
Confidence 9988777777787765432221 356667788888655443
No 362
>PRK06500 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.46 Score=38.31 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.0
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~ 40 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP 40 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence 367899999995 9999999999999999999888763
No 363
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=91.29 E-value=1.1 Score=38.51 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=54.7
Q ss_pred CCceEEEECCCCCCCCChhhHhhCCc-EEEeCCC-CCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEE
Q 045521 12 PKLEIVATCSAGLDKIDLVKCKEKGI-QVTNTPD-VLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGII 89 (204)
Q Consensus 12 ~~Lk~I~~~~~G~d~id~~~~~~~gI-~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIv 89 (204)
++.=+|=....|+-.+ ++..-++ +|.|+.+ .+..+ -.++.=++...+. .| .+.|++|+|+
T Consensus 103 ~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~~qHP--TQ~LLDl~TI~~~------------~G-~~~gl~iaiv 164 (316)
T COG0540 103 VDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGSHQHP--TQALLDLYTIREE------------FG-RLDGLKIAIV 164 (316)
T ss_pred CCEEEEeCccccHHHH---HHHhcCCCceEECCCCCCCCc--cHHHHHHHHHHHH------------hC-CcCCcEEEEE
Confidence 3333444444444333 3333466 6888643 22222 2344444444432 22 3899999999
Q ss_pred e---CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 90 G---LGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 90 G---~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
| +|+..+..++.|+.||++|..++|.
T Consensus 165 GDlkhsRva~S~~~~L~~~ga~v~lvsP~ 193 (316)
T COG0540 165 GDLKHSRVAHSNIQALKRFGAEVYLVSPE 193 (316)
T ss_pred ccccchHHHHHHHHHHHHcCCEEEEECch
Confidence 9 8999999999999999999999875
No 364
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.27 E-value=0.45 Score=38.47 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=43.3
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-------------CCCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-------------KYKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-------------~~~G~lvd~~aL~~aL~ 137 (204)
.+.||++.|.|. |.||+.+++.+..-|++|+..+|+..... .+.+.+-|++++.++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVD 73 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 368999999996 89999999999989999988887643110 01166667777766655
No 365
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.51 Score=38.03 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=42.6
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC--------------CCCcceeCHHHHHHHHH
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT--------------KYKGALVDESELVSALL 137 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~--------------~~~G~lvd~~aL~~aL~ 137 (204)
.+.+|++.|.|. |.||+.+++.+..-|++|+..+|+..... .+.+.+-|++++.++++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 467999999995 99999999999999999988877543100 01256666776655554
No 366
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.24 E-value=0.61 Score=38.01 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=32.9
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.| -|.||+.+++.+..-|++|+..+|+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~ 45 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 57899999999 58999999999999999998887754
No 367
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.23 E-value=0.37 Score=41.10 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
.|.+|.|+|.|.||..+++.++.+|++ |++.+++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 489999999999999999999999999 8887664
No 368
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=91.19 E-value=0.39 Score=40.46 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=29.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhcC----CEEEEEcCCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFG----CFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg----~~V~~~~r~~~ 117 (204)
+++|+||+|++|++++.-+..-| -+|++.+|+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e 39 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEE 39 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHH
Confidence 58999999999999999998777 57888887653
No 369
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.18 E-value=0.4 Score=39.17 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=32.1
Q ss_pred ccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.+|++.|.|.+ .||+.+|+.+...|++|+..+|+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 4689999999974 69999999999999999988876
No 370
>PRK08223 hypothetical protein; Validated
Probab=91.15 E-value=0.32 Score=41.39 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=30.5
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r 114 (204)
..|++++|.|+|+|.+|..+++.|...|.. +..+|.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 469999999999999999999999988874 444443
No 371
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.11 E-value=0.93 Score=38.09 Aligned_cols=38 Identities=32% Similarity=0.223 Sum_probs=33.5
Q ss_pred cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|.| .|.||..+++.+..-|++|+..++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468899999999 58899999999999999998887754
No 372
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.09 E-value=0.47 Score=40.38 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCCCCCCC----CC--------cceeCHHHHHHHHHcCCceEE
Q 045521 78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAEKPNTK----YK--------GALVDESELVSALLEDRLAAA 144 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~~~~~~----~~--------G~lvd~~aL~~aL~~g~i~ga 144 (204)
+.+++||++.|||.|. +|+-+|.+|..-|+.|+.+.+..+.-.+ .+ ...|.. +.++.|. .
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~----~~vk~ga---v 226 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPG----EWIKPGA---I 226 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccH----HHcCCCc---E
Confidence 4579999999999999 9999999999999999876544322111 00 333443 4556664 4
Q ss_pred EeeCCCCC----CCCCC-C---cCCCCceEEcccCCCCcHHHHHHHHHHHHHHHH
Q 045521 145 VLDVFEHE----PQVPE-E---LFGLENVVLLPHAASGTEETRKATADIVIENLE 191 (204)
Q Consensus 145 ~lDV~~~E----P~~~~-~---l~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~ 191 (204)
.+||--+. .+..+ . ..+. --.+||=-||...-+...+.+.+++..+
T Consensus 227 VIDvGin~~~~gk~~GDvd~~~~~~~-a~~itPvPGGVGp~T~a~L~~N~~~a~~ 280 (285)
T PRK10792 227 VIDVGINRLEDGKLVGDVEFETAAER-ASWITPVPGGVGPMTVATLLENTLQACE 280 (285)
T ss_pred EEEcccccccCCCcCCCcCHHHHHhh-ccCcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 67775332 11111 1 1111 3458998888776555455444444433
No 373
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.07 E-value=0.47 Score=40.87 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=30.6
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~ 116 (204)
+..++|+|||.|.+|..++..+...| .++..+|...
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 45789999999999999999988777 6888888754
No 374
>PRK12742 oxidoreductase; Provisional
Probab=91.05 E-value=0.53 Score=37.71 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=41.4
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CC-CCcceeCHHHHHHHHHc
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN---------TK-YKGALVDESELVSALLE 138 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~-~~G~lvd~~aL~~aL~~ 138 (204)
.+.+|++.|.|. |.||+++++.+...|++|+...+..... .. +...+-|++.+.++++.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHH
Confidence 478999999995 8999999999999999997665432110 00 11445566777666654
No 375
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.01 E-value=0.5 Score=38.19 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=32.3
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..|++|.|.|.|.+|+.++++++..|.+|+..+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 368899999999999999999999999998887753
No 376
>PRK05854 short chain dehydrogenase; Provisional
Probab=91.00 E-value=0.59 Score=39.80 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=33.9
Q ss_pred cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+++||++.|.| .+.||+++|+.|..-|++|+..+|+.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999 57899999999999999999888864
No 377
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=91.00 E-value=0.72 Score=39.46 Aligned_cols=57 Identities=28% Similarity=0.267 Sum_probs=42.6
Q ss_pred cCCCEEEEEe-CChHHHHHHHHHhhcC--CEEEEEcCCCCCC---------CC---CCcceeCHHHHHHHHH
Q 045521 81 ISGRSVGIIG-LGRIGMAVAKRAEAFG--CFISYRSRAEKPN---------TK---YKGALVDESELVSALL 137 (204)
Q Consensus 81 l~g~tvGIvG-~G~IG~~va~~~~~fg--~~V~~~~r~~~~~---------~~---~~G~lvd~~aL~~aL~ 137 (204)
+.||++.|.| .|.||+.+++.|..-| .+|..++|..... .. +.+.+-|.+.+.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh
Confidence 5789999999 4999999999998765 6888887654211 01 1278888888888775
No 378
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.96 E-value=0.43 Score=39.89 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=31.4
Q ss_pred cCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcCC
Q 045521 81 ISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 81 l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
+.||++.|.|.+ .||+++|+.+..-|++|+..+|+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecC
Confidence 679999999984 79999999999999999887765
No 379
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=90.95 E-value=0.8 Score=40.97 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=43.6
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCC--------C-------CcceeCHHHHHHHHHcCCce
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTK--------Y-------KGALVDESELVSALLEDRLA 142 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~--------~-------~G~lvd~~aL~~aL~~g~i~ 142 (204)
|+|+|+|-|.+|..+++.++.+|++++.++........ + .+...|.++|++..++.++-
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id 76 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAE 76 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCC
Confidence 79999999999999999999999999887644322110 0 12445778888887776653
No 380
>PRK07985 oxidoreductase; Provisional
Probab=90.94 E-value=0.99 Score=38.02 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=31.9
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.||++.|.|. |.||+++|+.|...|++|+..++.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 488999999995 899999999999999999877654
No 381
>PRK08251 short chain dehydrogenase; Provisional
Probab=90.93 E-value=0.79 Score=37.01 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|++.|.| .|.||+.+++.+..-|++|+..+|+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~ 36 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRT 36 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 68899998 79999999999999999999888765
No 382
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.93 E-value=0.46 Score=38.93 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=31.1
Q ss_pred ccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEcC
Q 045521 80 KISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 80 ~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~r 114 (204)
.|.||++.|.|.. .||+++|+.+...|++|+..++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~ 40 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW 40 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence 5899999999985 7999999999999999987643
No 383
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.92 E-value=0.53 Score=40.02 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=34.0
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
+.++.+|++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346789999999999999999998888897 688899874
No 384
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=90.91 E-value=0.68 Score=37.17 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=32.2
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+++++++.|.| .|.||+++++.+..-|..|...++..
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~ 40 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRV 40 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence 47899999999 69999999999999999988776653
No 385
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.88 E-value=0.44 Score=41.31 Aligned_cols=35 Identities=37% Similarity=0.485 Sum_probs=31.4
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
.|.+|.|.|.|.||+..+++++.+|+ +|++.+++.
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~ 222 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP 222 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 58999999999999999999999999 788876643
No 386
>PRK07677 short chain dehydrogenase; Provisional
Probab=90.86 E-value=0.78 Score=37.32 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=30.1
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
||++.|.|. |.||+.+++.+...|++|+..+|+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~ 35 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK 35 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999996 6799999999999999999888764
No 387
>PRK09072 short chain dehydrogenase; Provisional
Probab=90.85 E-value=0.51 Score=38.69 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=33.0
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.++++.|.| .|.||+.+++.+...|.+|+..+|..
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA 39 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 36789999999 59999999999999999999988864
No 388
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.83 E-value=0.54 Score=40.06 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=33.7
Q ss_pred ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCC
Q 045521 78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~ 115 (204)
+.++.||++.|||.++ +|+-+|.+|..-|+.|..+...
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~ 197 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF 197 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence 4578999999999999 9999999999999999776543
No 389
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.80 E-value=0.46 Score=38.89 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=42.6
Q ss_pred cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-------CCC---CcceeC-HHHHHHHH
Q 045521 79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-------TKY---KGALVD-ESELVSAL 136 (204)
Q Consensus 79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~~~---~G~lvd-~~aL~~aL 136 (204)
....+++|.|+| .|.||+.+++.|..-|.+|++..|..... ... .|.+-| .+++.+++
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~ 82 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAI 82 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHh
Confidence 456789999999 59999999999988899998877754221 011 155556 46777777
No 390
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.80 E-value=0.93 Score=40.52 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.2
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..+.|+++.|.|. |.||+.+|+.+...|++|+..++.
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~ 243 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP 243 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999997 999999999999999999988774
No 391
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.78 E-value=0.54 Score=38.33 Aligned_cols=37 Identities=35% Similarity=0.467 Sum_probs=33.2
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~ 42 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE 42 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 478999999996 8899999999999999999888863
No 392
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.77 E-value=0.52 Score=38.84 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=32.7
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.|+++.|.|. |.||+++++.|..-|++|+..+|+.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 467899999995 8999999999999999998888754
No 393
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.75 E-value=0.43 Score=43.01 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=35.7
Q ss_pred ccccCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
..+++||+|+|||.|+.|-.++.-|..-|.+|..+-|++.
T Consensus 170 ~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 170 PEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred ccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 4579999999999999999999999999999988777653
No 394
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=90.72 E-value=1 Score=40.17 Aligned_cols=67 Identities=24% Similarity=0.224 Sum_probs=53.4
Q ss_pred hCCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCCE---EE
Q 045521 34 EKGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCF---IS 110 (204)
Q Consensus 34 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~~---V~ 110 (204)
+..|+|.|.. .+. +|=-+++-+++.+|- .++.|+..+|.+.|.|.-|-.+++++++.|++ |+
T Consensus 165 ~~~IPvFhDD-qqG--Taiv~lA~llnalk~------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~ 229 (432)
T COG0281 165 RMNIPVFHDD-QQG--TAIVTLAALLNALKL------------TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF 229 (432)
T ss_pred cCCCCccccc-ccH--HHHHHHHHHHHHHHH------------hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE
Confidence 4579999974 333 344577888888863 46789999999999999999999999999994 77
Q ss_pred EEcCC
Q 045521 111 YRSRA 115 (204)
Q Consensus 111 ~~~r~ 115 (204)
.+|+.
T Consensus 230 ~~D~~ 234 (432)
T COG0281 230 VVDRK 234 (432)
T ss_pred EEecC
Confidence 77765
No 395
>PLN02427 UDP-apiose/xylose synthase
Probab=90.68 E-value=0.65 Score=40.61 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=33.1
Q ss_pred ccccCCCEEEEEe-CChHHHHHHHHHhhc-CCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIG-LGRIGMAVAKRAEAF-GCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~f-g~~V~~~~r~~ 116 (204)
|+.++.++|.|.| .|-||+.+++.|..- |.+|+.++|..
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 5667888999999 599999999999876 58999888653
No 396
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.64 E-value=1 Score=38.21 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=33.3
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..++.||++.|.|. |.||+++|+.|..-|++|+..++.
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~ 45 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA 45 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 35689999999995 789999999999999999888764
No 397
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.63 E-value=1.2 Score=36.56 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCEEEEEe-CChHHHHHHHHHhhc-CCEEEEEcCCCC
Q 045521 82 SGRSVGIIG-LGRIGMAVAKRAEAF-GCFISYRSRAEK 117 (204)
Q Consensus 82 ~g~tvGIvG-~G~IG~~va~~~~~f-g~~V~~~~r~~~ 117 (204)
.++++.|.| .|.||+++|+.+..- |++|+..+|+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~ 44 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDD 44 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 578999999 589999999998877 499988888653
No 398
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.59 E-value=0.67 Score=37.45 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=40.6
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEE-EcCCCCCC-----------CC---CCcceeCHHHHHHHHHc
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISY-RSRAEKPN-----------TK---YKGALVDESELVSALLE 138 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~-~~r~~~~~-----------~~---~~G~lvd~~aL~~aL~~ 138 (204)
+.|+++.|.|- |.||+.+++.+...|.+|+. ..|...+. .. +.+.+-|++.+.+++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQ 75 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 56899999994 89999999999999999865 45543210 00 11666677776666553
No 399
>PRK06128 oxidoreductase; Provisional
Probab=90.58 E-value=0.88 Score=38.30 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=31.4
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.++||++.|.|- |.||+.+|+.+..-|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 588999999995 899999999999999999765543
No 400
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.56 E-value=0.83 Score=40.34 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=47.2
Q ss_pred ccccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-------------CC---CCcceeCHHHHHHHHHc
Q 045521 78 TTKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-------------TK---YKGALVDESELVSALLE 138 (204)
Q Consensus 78 ~~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-------------~~---~~G~lvd~~aL~~aL~~ 138 (204)
+....+++|.|.|- |.||+.+++.|..-|.+|...+|..... .. ..|.+-|.+.+.++++.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFS 132 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHH
Confidence 45578899999995 9999999999998999999888765321 01 11778888888888874
No 401
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=90.56 E-value=0.47 Score=41.20 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=30.7
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
.|.+|.|+|.|.||+..+++++.+|+ +|+..+++
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~ 220 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDIN 220 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999999999 68877654
No 402
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.53 E-value=0.75 Score=41.93 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=28.8
Q ss_pred CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~ 116 (204)
++|+|+|+|.+|..+|-.+... |.+|+++|...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 5799999999999999999754 78999998764
No 403
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.51 E-value=0.47 Score=42.56 Aligned_cols=82 Identities=24% Similarity=0.230 Sum_probs=51.0
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCcCCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLE 163 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~l~~~~ 163 (204)
+|.|+|+|..|...|+.|...|.+|.++|+...+. ...+.+.|++-.+. .-+.. +.++-.. ..+.+.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~---------~~~~~~~l~~~gi~-~~~g~-~~~~~~~~~~~~~~d 70 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE---------LLERQQELEQEGIT-VKLGK-PLELESFQPWLDQPD 70 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh---------hHHHHHHHHHcCCE-EEECC-ccchhhhhHHhhcCC
Confidence 68999999999999999999999999999765431 23333445442222 11111 1111000 1233457
Q ss_pred ceEEcccCCCCcHH
Q 045521 164 NVVLLPHAASGTEE 177 (204)
Q Consensus 164 nvilTPH~a~~t~~ 177 (204)
-|++||++.....+
T Consensus 71 ~vv~s~gi~~~~~~ 84 (459)
T PRK02705 71 LVVVSPGIPWDHPT 84 (459)
T ss_pred EEEECCCCCCCCHH
Confidence 79999999866554
No 404
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.50 E-value=0.24 Score=39.36 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=45.0
Q ss_pred cccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCC-------C----CCcceeCHHHHHHHHHc
Q 045521 79 TKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNT-------K----YKGALVDESELVSALLE 138 (204)
Q Consensus 79 ~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~-------~----~~G~lvd~~aL~~aL~~ 138 (204)
..|.|+.|.+-|.| .||+++.+.|..-|++|+.+.|.+..-. . ..|.+-+.+++.++|-+
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~ 74 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVP 74 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcc
Confidence 35899999999987 5999999999999999999999763210 1 11555666776666543
No 405
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.50 E-value=0.54 Score=38.68 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=33.7
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|.|. |.||+++|+.+..-|++|+..+|..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 4688999999996 7899999999999999998887764
No 406
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.48 E-value=0.6 Score=38.12 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=33.8
Q ss_pred cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.++.||++.|.| .|.||+.+|+.+...|.+|+..+|+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~ 46 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA 46 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457899999999 59999999999999999998888754
No 407
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=90.46 E-value=0.54 Score=38.10 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=33.6
Q ss_pred cccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+++|++.|.| .|.||..+++.|...|++|+..+|+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH
Confidence 357899999998 68899999999999999999888864
No 408
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.44 E-value=0.5 Score=39.84 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=30.6
Q ss_pred CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+||+|.|.| .|-||+.+++.|..-|.+|.+..|..
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 478999999 69999999999999999998776643
No 409
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=90.42 E-value=0.86 Score=40.96 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=28.8
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
|+|+|+|-|.++..+++.++.+|++|++++.
T Consensus 3 kkili~g~g~~~~~~~~aa~~lG~~vv~~~~ 33 (449)
T TIGR00514 3 DKILIANRGEIALRILRACKELGIKTVAVHS 33 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 6999999999999999999999999988754
No 410
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.42 E-value=0.52 Score=41.33 Aligned_cols=34 Identities=38% Similarity=0.653 Sum_probs=31.0
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.|++|.|.|.|.||+..+++++.+|++|+..+++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5899999999999999999999999998877654
No 411
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=90.41 E-value=1.2 Score=39.64 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=45.4
Q ss_pred cccCCCEEEEEeC-----------------ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCC---CcceeCHHHHHHHHHc
Q 045521 79 TKISGRSVGIIGL-----------------GRIGMAVAKRAEAFGCFISYRSRAEKPNTKY---KGALVDESELVSALLE 138 (204)
Q Consensus 79 ~~l~g~tvGIvG~-----------------G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~---~G~lvd~~aL~~aL~~ 138 (204)
.++.||++.|-|- |.+|.++|+.+...|++|+++++........ .-.+-+.+++.+++++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~ 263 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVKRIDVESAQEMLDAVLA 263 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcEEEccCCHHHHHHHHHH
Confidence 4589999999997 7899999999999999999887654221111 1345677888888864
No 412
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.39 E-value=0.53 Score=37.62 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=33.2
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
++.++++.|.| .|.||+.+++.+..-|.+|+..+|++.
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 35688999999 499999999999999999998888753
No 413
>PRK08017 oxidoreductase; Provisional
Probab=90.39 E-value=0.53 Score=38.19 Aligned_cols=53 Identities=23% Similarity=0.149 Sum_probs=38.7
Q ss_pred CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-----C---CCcceeCHHHHHHHH
Q 045521 84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNT-----K---YKGALVDESELVSAL 136 (204)
Q Consensus 84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~-----~---~~G~lvd~~aL~~aL 136 (204)
|++.|.|. |.||+++++.+..-|.+|+..+|+..... . +.+.+-|.+++.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 64 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAA 64 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHH
Confidence 68999998 99999999999999999988887653211 1 115555666655444
No 414
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.38 E-value=0.97 Score=39.51 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=42.0
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCC-------CC-CCcceeCHHHHHHHHH
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPN-------TK-YKGALVDESELVSALL 137 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~-------~~-~~G~lvd~~aL~~aL~ 137 (204)
.+|+|.|.|- |-||+.+++.|..-|.+|...+|..... .. +.+.+-|.+.+.++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 84 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK 84 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh
Confidence 5789999996 9999999999999999999988753211 01 1166667777776665
No 415
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.37 E-value=0.43 Score=41.22 Aligned_cols=34 Identities=32% Similarity=0.354 Sum_probs=30.3
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
.|++|.|.|.|.||+..++.++.+|++ |++.+++
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~ 210 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDID 210 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 589999999999999999999999995 8777654
No 416
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.31 E-value=0.61 Score=40.27 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=30.8
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcC-CEEEEEcCCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYRSRAEK 117 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg-~~V~~~~r~~~ 117 (204)
+..++|+|||.|.+|..+|..+..-| ++|..+|..+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 45589999999999999999987667 48888887654
No 417
>PRK06196 oxidoreductase; Provisional
Probab=90.28 E-value=0.59 Score=39.66 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=33.8
Q ss_pred cccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 79 TKISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 79 ~~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..+.||++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~ 60 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP 60 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999996 8999999999999999999888864
No 418
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.27 E-value=0.62 Score=39.52 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=33.3
Q ss_pred ccCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCCC
Q 045521 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAEK 117 (204)
Q Consensus 80 ~l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~~ 117 (204)
++.+|++.|+|.|..|++++--|...|+ +|..++|+..
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ 162 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS 162 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 5778999999999999999999999998 5788888753
No 419
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.26 E-value=0.93 Score=36.92 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=30.3
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|++.|.|- |.||+.+++.|...|++|+..+|+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~ 36 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINS 36 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 689999996 7999999999999999998888764
No 420
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.25 E-value=0.67 Score=37.83 Aligned_cols=54 Identities=24% Similarity=0.113 Sum_probs=39.1
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCCC---------C---CCcceeCHHHHHHHHH
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPNT---------K---YKGALVDESELVSALL 137 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~~---------~---~~G~lvd~~aL~~aL~ 137 (204)
|++.|.| -|.||+++++.+..-|.+|...+|+..... . +.+.+-|++++.++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 6889998 589999999999999999998887654210 0 1155666666655544
No 421
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=90.17 E-value=0.63 Score=38.14 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.5
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.||++.|.|. |.||+++++.|...|++|+..+|+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 68999999995 7899999999999999999888864
No 422
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=90.15 E-value=0.67 Score=37.40 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=32.0
Q ss_pred cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
|.++++.|.| .|.||+.+++.|..-|.+|+..+|+.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 4689999999 58999999999999999998887764
No 423
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.15 E-value=0.44 Score=37.36 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=26.8
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
+|+|+|+|.+|..+++.|...|.. +..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999988885 7777654
No 424
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.14 E-value=0.58 Score=39.81 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.2
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
++|+|||.|.+|..+|..+...|. +|..+|+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 589999999999999999976554 898888844
No 425
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.14 E-value=0.61 Score=38.79 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.1
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcC-----------CEEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFG-----------CFISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg-----------~~V~~~~r~ 115 (204)
+..+|.|||+|.+|..+++.|...| .++..+|..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 6789999999999999999997653 277777753
No 426
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=90.11 E-value=1.1 Score=38.51 Aligned_cols=55 Identities=24% Similarity=0.178 Sum_probs=41.6
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC-----------------CCC---CcceeCHHHHHHHHHc
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN-----------------TKY---KGALVDESELVSALLE 138 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~-----------------~~~---~G~lvd~~aL~~aL~~ 138 (204)
|+|.|.| .|-||+.+++.|...|.+|+.++|..... ... .|.+-|.+.+.++++.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 76 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDE 76 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHh
Confidence 5788888 59999999999999999999887754210 001 1777788888777775
No 427
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.08 E-value=0.67 Score=37.65 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=33.4
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.|. |.||+.+++.|..-|.+|+..+|.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 467999999997 9999999999999999998888765
No 428
>PRK07411 hypothetical protein; Validated
Probab=90.06 E-value=0.45 Score=42.20 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=30.8
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r 114 (204)
..|+.++|+|||+|.+|..+++.|...|.. +..+|.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 469999999999999999999999988874 555554
No 429
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.03 E-value=0.49 Score=34.58 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=24.5
Q ss_pred EEEEEe-CChHHHHHHHHHhh-cCCEEEE-EcCCC
Q 045521 85 SVGIIG-LGRIGMAVAKRAEA-FGCFISY-RSRAE 116 (204)
Q Consensus 85 tvGIvG-~G~IG~~va~~~~~-fg~~V~~-~~r~~ 116 (204)
+|+||| .|.+|+.+.++|.. ..+++.. ++++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 699999 99999999999964 5666544 44443
No 430
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.95 E-value=0.62 Score=40.28 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.|.+|.|.|. |.||+..+++++.+|++|++.+++.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5899999999 9999999999999999998876543
No 431
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.90 E-value=0.54 Score=40.85 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=31.0
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~~ 116 (204)
.|.+|.|.|.|.||+..+.+++..|+ +|+..+++.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~ 226 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE 226 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence 58999999999999999999999999 588776643
No 432
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.90 E-value=0.63 Score=40.37 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=31.0
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
-.|.+|.|+|.|.+|...+++++.+|+ +|++.+++
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 218 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN 218 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 358999999999999999999999999 68877654
No 433
>PRK07791 short chain dehydrogenase; Provisional
Probab=89.89 E-value=1.1 Score=37.54 Aligned_cols=37 Identities=30% Similarity=0.281 Sum_probs=32.0
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|. +.||+++|+.+...|++|+..++..
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence 378999999995 7999999999999999998876643
No 434
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=89.89 E-value=0.98 Score=38.12 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=39.9
Q ss_pred CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHc
Q 045521 84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLE 138 (204)
Q Consensus 84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~ 138 (204)
++|.|.|. |-||+.+++.|..-| +|+..++... .+.|.+-|.+++.+++++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~---~~~~Dl~d~~~~~~~~~~ 52 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST---DYCGDFSNPEGVAETVRK 52 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc---cccCCCCCHHHHHHHHHh
Confidence 47899995 999999999998888 8888887532 123677788888777774
No 435
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.85 E-value=0.66 Score=39.19 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=31.7
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
-.|.+|.|+|.|.+|+.++++++.+|.+|+..+++.
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~ 196 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP 196 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999999999999999999999998876654
No 436
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.85 E-value=0.48 Score=42.05 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=30.7
Q ss_pred cccCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521 79 TKISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR 114 (204)
Q Consensus 79 ~~l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r 114 (204)
..|++++|.|+|+|.+|..+|+.|...|.. +..+|.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 468999999999999999999999888874 566654
No 437
>PRK08177 short chain dehydrogenase; Provisional
Probab=89.78 E-value=0.69 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.4
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
|++.|.| .|.||+.+++.+...|++|+..+|+..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 5788898 799999999999999999999988754
No 438
>PRK06198 short chain dehydrogenase; Provisional
Probab=89.76 E-value=0.67 Score=37.73 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=33.0
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCE-EEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCF-ISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~-V~~~~r~~ 116 (204)
.+.+|++.|.|. |.||+.+++.+...|++ |+..+|+.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~ 41 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA 41 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence 578999999995 89999999999999999 88888764
No 439
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.76 E-value=0.99 Score=40.94 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=26.5
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhh-----cCCEEEEE
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEA-----FGCFISYR 112 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~-----fg~~V~~~ 112 (204)
...++|||-|||+||+.++|.+-. -+++|.+.
T Consensus 125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAI 161 (477)
T PRK08289 125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAI 161 (477)
T ss_pred CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEE
Confidence 457899999999999999998742 46788776
No 440
>PLN02240 UDP-glucose 4-epimerase
Probab=89.74 E-value=0.78 Score=39.25 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=42.9
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC---------------CC---CCcceeCHHHHHHHHHc
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN---------------TK---YKGALVDESELVSALLE 138 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------------~~---~~G~lvd~~aL~~aL~~ 138 (204)
.+.+++|.|.| .|.||+.+++.|..-|.+|++.++..... .. ..+.+-|.+.+.++++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~ 79 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAS 79 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHh
Confidence 46789999998 59999999999998899999887542110 01 11666677777666654
No 441
>PTZ00058 glutathione reductase; Provisional
Probab=89.69 E-value=0.79 Score=42.68 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=31.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
+++|.|||-|.||-++|..+..+|.+|..+.+..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 79999999999999999999999999988877543
No 442
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=89.64 E-value=0.63 Score=33.39 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=25.0
Q ss_pred EEEEEeCChHHHHHHHHHhhc--CCEEE-EEcCCC
Q 045521 85 SVGIIGLGRIGMAVAKRAEAF--GCFIS-YRSRAE 116 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~f--g~~V~-~~~r~~ 116 (204)
++||||+|.+|+...+-+... ++++. .+++++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~ 36 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP 36 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH
Confidence 799999999999999887765 56765 456654
No 443
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.62 E-value=0.77 Score=37.48 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=33.2
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.| .|.||+.+++.|..-|.+|+..+|+.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 46899999999 78999999999999999999988864
No 444
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.60 E-value=0.68 Score=39.52 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=31.3
Q ss_pred CCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.|.+|.|.|. |.+|+.++++++.+|++|+...++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5899999998 9999999999999999998766543
No 445
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=89.60 E-value=1.8 Score=34.76 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=30.9
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCC
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKP 118 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~ 118 (204)
++|+||| -|++|+++++-++.=|-+|+++-|++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHh
Confidence 5799999 5999999999999999999998887644
No 446
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=89.55 E-value=0.8 Score=37.45 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=28.2
Q ss_pred CEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 36778884 7899999999999999999888764
No 447
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=89.51 E-value=0.71 Score=39.30 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=31.8
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.|++|.|.|.|.+|+.+++.++++|++|++.+++.
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 58899999999999999999999999998887653
No 448
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.47 E-value=0.75 Score=39.63 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=34.0
Q ss_pred ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+++.++++|.|.| .|-||+.+++.|..-|.+|+..+|..
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5678899999999 69999999999998899998876643
No 449
>PRK06270 homoserine dehydrogenase; Provisional
Probab=89.44 E-value=0.51 Score=41.07 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.7
Q ss_pred CEEEEEeCChHHHHHHHHHhhc----------CCEEEEE
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF----------GCFISYR 112 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f----------g~~V~~~ 112 (204)
-+|||+|+|.||+.+++.++.. +++|.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai 41 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAI 41 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEE
Confidence 3799999999999999998643 6777554
No 450
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.44 E-value=0.67 Score=39.88 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCC-EEEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGC-FISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~-~V~~~~r~ 115 (204)
.|++|.|.|.|.+|+.++++++.+|+ +|++.+++
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~ 211 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGS 211 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 68999999999999999999999999 88877654
No 451
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=89.42 E-value=0.57 Score=40.82 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=23.6
Q ss_pred CEEEEEeCChHHHHHHHHHhhc-CCEEEEE
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF-GCFISYR 112 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f-g~~V~~~ 112 (204)
.+|||+|+|+||+..++.+... +.++.++
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI 35 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAV 35 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEE
Confidence 5999999999999999987643 5777653
No 452
>PLN02572 UDP-sulfoquinovose synthase
Probab=89.35 E-value=1.6 Score=39.24 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=32.7
Q ss_pred ccccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcC
Q 045521 78 TTKISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSR 114 (204)
Q Consensus 78 ~~~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r 114 (204)
...+.+++|.|.| .|-||+.+++.|..-|.+|..+++
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 3568899999999 599999999999999999988764
No 453
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.32 E-value=0.84 Score=37.01 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=33.4
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.+|++.|.| -|.||+++++.+..-|++|+..+|+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999999 68999999999999999999888764
No 454
>PRK08643 acetoin reductase; Validated
Probab=89.29 E-value=1 Score=36.60 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+|++.|.| -|.||+.+++.+..-|++|+..+|+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~ 36 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 68888988 58999999999999999998888764
No 455
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.29 E-value=0.75 Score=39.25 Aligned_cols=35 Identities=34% Similarity=0.626 Sum_probs=31.5
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.|.++.|.|.|.+|+.++++++.+|++|++.+++.
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~ 203 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP 203 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57899999999999999999999999998877653
No 456
>PRK07201 short chain dehydrogenase; Provisional
Probab=89.25 E-value=0.81 Score=42.80 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=33.2
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.++||++.|.|- |.||+++++.+..-|++|+..+|+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~ 405 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNG 405 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 577999999995 8899999999999999999988764
No 457
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.17 E-value=0.83 Score=34.53 Aligned_cols=77 Identities=22% Similarity=0.155 Sum_probs=45.4
Q ss_pred CEEEEEeC-ChHHHHHHHHHh--hcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCcC
Q 045521 84 RSVGIIGL-GRIGMAVAKRAE--AFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELF 160 (204)
Q Consensus 84 ~tvGIvG~-G~IG~~va~~~~--~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~l~ 160 (204)
.+|+|||. |++|+.+|-.+. .+.-++..+|+.... ..|...|.++....+...... ... ....+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~---~~g~a~Dl~~~~~~~~~~~~i------~~~---~~~~~~ 68 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDK---AEGEALDLSHASAPLPSPVRI------TSG---DYEALK 68 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHH---HHHHHHHHHHHHHGSTEEEEE------EES---SGGGGT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccc---ceeeehhhhhhhhhccccccc------ccc---cccccc
Confidence 37999999 999999999885 566688888876321 014444444444333221111 111 113466
Q ss_pred CCCceEEcccCC
Q 045521 161 GLENVVLLPHAA 172 (204)
Q Consensus 161 ~~~nvilTPH~a 172 (204)
+.+=|++|--..
T Consensus 69 ~aDivvitag~~ 80 (141)
T PF00056_consen 69 DADIVVITAGVP 80 (141)
T ss_dssp TESEEEETTSTS
T ss_pred cccEEEEecccc
Confidence 677788875443
No 458
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=89.09 E-value=0.84 Score=38.42 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=31.3
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
-.|.+|.|.|.|.+|+.+++.++.+|.+|++.+++
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~ 188 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRH 188 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 35899999999999999999999999998877653
No 459
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.07 E-value=0.74 Score=39.36 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=32.5
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++.+++|.|.|. |-||+.+++.|..-|.+|+..+|..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~ 40 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS 40 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence 567899999995 9999999999999999998877643
No 460
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=89.06 E-value=2 Score=38.12 Aligned_cols=49 Identities=29% Similarity=0.321 Sum_probs=39.4
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHH
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALL 137 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~ 137 (204)
.|.+|.++=.|.-|.+.+++++.+|.+|..++... |+-+|.+++.++|+
T Consensus 79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w-------g~~v~p~~v~~~L~ 127 (383)
T COG0075 79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW-------GEAVDPEEVEEALD 127 (383)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC-------CCCCCHHHHHHHHh
Confidence 58899999999999999999999999998877654 44455555555555
No 461
>PRK07236 hypothetical protein; Provisional
Probab=89.03 E-value=1.5 Score=38.29 Aligned_cols=57 Identities=23% Similarity=0.195 Sum_probs=40.9
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcc-eeCHHHHHHHHHc
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGA-LVDESELVSALLE 138 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~-lvd~~aL~~aL~~ 138 (204)
+...+|.|||.|-.|..+|..|+..|.+|..+.+.+.......+. .+.. ...+.|++
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~-~~~~~l~~ 61 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQP-ELLRALAE 61 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCH-HHHHHHHH
Confidence 456899999999999999999999999999998875432222122 2343 35556654
No 462
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.92 E-value=0.3 Score=43.33 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 83 g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
...+|+||+|-.|+.+|.-...-|.+|.+|+|+..
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ 37 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTE 37 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHH
Confidence 45799999999999999999999999999999864
No 463
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.91 E-value=0.74 Score=37.84 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.9
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
.|.++.|.|.|.+|+.+++.++.+|++ |+..+++
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~ 131 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPD 131 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence 689999999999999999999999999 8877754
No 464
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=88.91 E-value=0.61 Score=40.92 Aligned_cols=30 Identities=30% Similarity=0.255 Sum_probs=23.7
Q ss_pred CEEEEEeCChHHHHHHHHHhhc-----CCEEEEEc
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF-----GCFISYRS 113 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f-----g~~V~~~~ 113 (204)
.+|||=|||+|||.+.|.+-.- +++|.+..
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAIN 38 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVV 38 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEe
Confidence 4899999999999999986532 46776654
No 465
>PRK12827 short chain dehydrogenase; Provisional
Probab=88.86 E-value=1.3 Score=35.60 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=31.3
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.+.++++.|.| .|.||+.+|+.|..-|.+|+..++.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~ 39 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH 39 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence 36789999999 6999999999999999999886653
No 466
>PRK12862 malic enzyme; Reviewed
Probab=88.86 E-value=2.2 Score=41.24 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=52.4
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC---EEEEE
Q 045521 36 GIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---FISYR 112 (204)
Q Consensus 36 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~---~V~~~ 112 (204)
+|++.|. +.... |=-+++-+++.+|- .++.|.+.+|.|.|.|.-|-.+|+++...|. +++.+
T Consensus 161 ~ip~f~D-D~~GT--a~v~la~l~~a~~~------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~ 225 (763)
T PRK12862 161 KIPVFHD-DQHGT--AIIVAAALLNGLKL------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVT 225 (763)
T ss_pred CCceEec-CcccH--HHHHHHHHHHHHHH------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEE
Confidence 6999998 44333 44478888888874 3567999999999999999999999999999 67777
Q ss_pred cCC
Q 045521 113 SRA 115 (204)
Q Consensus 113 ~r~ 115 (204)
|+.
T Consensus 226 D~~ 228 (763)
T PRK12862 226 DIK 228 (763)
T ss_pred cCC
Confidence 754
No 467
>PRK05586 biotin carboxylase; Validated
Probab=88.81 E-value=1.3 Score=39.91 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=26.5
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEE
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYR 112 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~ 112 (204)
|+|+|+|-|.+|.++++.++.+|++++.+
T Consensus 3 kkvli~g~G~~~~~~~~aa~~lG~~~v~v 31 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREMGIETVAV 31 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence 79999999999999999999999996544
No 468
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=88.81 E-value=0.87 Score=37.94 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.5
Q ss_pred CEEEEEeC-ChHHHHHHHHHhhc-CCEEEE-EcCCC
Q 045521 84 RSVGIIGL-GRIGMAVAKRAEAF-GCFISY-RSRAE 116 (204)
Q Consensus 84 ~tvGIvG~-G~IG~~va~~~~~f-g~~V~~-~~r~~ 116 (204)
.+|+|+|+ |++|+.+++.+... ++++.+ +++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 47999998 99999999998764 688765 55544
No 469
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=88.81 E-value=1.5 Score=36.97 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=35.1
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHH
Q 045521 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE 131 (204)
Q Consensus 85 tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~a 131 (204)
.|.|||.|-.|..+|..|+..|.+|+.+.+.+.+.....|..+...+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~ 49 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNS 49 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHH
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccccccccccccccccc
Confidence 58999999999999999999999999999876554333355555444
No 470
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.76 E-value=0.76 Score=39.80 Aligned_cols=35 Identities=37% Similarity=0.507 Sum_probs=31.0
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
..|.+|.|.|.|.||+.++++++..|++|+..+++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36899999999999999999999999998776654
No 471
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.74 E-value=2 Score=36.50 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhc----CC-------EEEEEcCC
Q 045521 50 VADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAF----GC-------FISYRSRA 115 (204)
Q Consensus 50 vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~f----g~-------~V~~~~r~ 115 (204)
+|=-+++-+|+.+|- .+..|.+.++.|+|.|..|-.+|+++... |+ +++.+|+.
T Consensus 4 Ta~V~lAgllnAlk~------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 4 TAAVALAGLLAALRI------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred HHHHHHHHHHHHHHH------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 344567777877764 35679999999999999999999999876 87 67777765
No 472
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.72 E-value=0.88 Score=40.76 Aligned_cols=79 Identities=27% Similarity=0.303 Sum_probs=49.8
Q ss_pred cCC-CEEEEEeCChHHHHHHHHHhhc--CCEEEEEcCCCCCCCCCCcceeCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 045521 81 ISG-RSVGIIGLGRIGMAVAKRAEAF--GCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157 (204)
Q Consensus 81 l~g-~tvGIvG~G~IG~~va~~~~~f--g~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~ 157 (204)
+.+ ++|.|+|+|.+|...++.+... |.+|.++|....+. ..+.|++| + .++..+. .+.
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~------------~~~~l~~g-~-----~~~~g~~-~~~ 64 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP------------GQEQLPED-V-----ELHSGGW-NLE 64 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch------------hHHHhhcC-C-----EEEeCCC-ChH
Confidence 566 8899999999999999999877 58899988653210 11224332 1 1211110 011
Q ss_pred CcCCCCceEEcccCCCCcHHH
Q 045521 158 ELFGLENVVLLPHAASGTEET 178 (204)
Q Consensus 158 ~l~~~~nvilTPH~a~~t~~~ 178 (204)
.+-+.+-|++||++.....+.
T Consensus 65 ~~~~~d~vV~SpgI~~~~p~~ 85 (438)
T PRK04663 65 WLLEADLVVTNPGIALATPEI 85 (438)
T ss_pred HhccCCEEEECCCCCCCCHHH
Confidence 233467799999998766543
No 473
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=88.66 E-value=2.1 Score=41.22 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC---EEEE
Q 045521 35 KGIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---FISY 111 (204)
Q Consensus 35 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~---~V~~ 111 (204)
.+|+|.|. +.+.. |=-+++-+++.+|- .++.+.+.++.|.|.|.-|-.+++++...|+ +|+.
T Consensus 152 ~~ip~f~D-D~~GT--a~v~lA~l~na~~~------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~ 216 (752)
T PRK07232 152 MDIPVFHD-DQHGT--AIISAAALLNALEL------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIV 216 (752)
T ss_pred cCCCeecc-ccchH--HHHHHHHHHHHHHH------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEE
Confidence 36999998 44433 44478888888874 3567999999999999999999999999998 6777
Q ss_pred EcCC
Q 045521 112 RSRA 115 (204)
Q Consensus 112 ~~r~ 115 (204)
+|+.
T Consensus 217 ~D~~ 220 (752)
T PRK07232 217 CDSK 220 (752)
T ss_pred EcCC
Confidence 7764
No 474
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=88.61 E-value=1.2 Score=34.56 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccccCCCEEEEEeCCh-HHHHHHHHHhhcCCEEEEEcCCC
Q 045521 78 TTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G~-IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.+++||++.|||-+. +|+-++.+|..-|+.|.....+.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence 4579999999999985 89999999999999997765443
No 475
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.60 E-value=0.77 Score=39.33 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=29.9
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
.|++|.|.|.|.+|+..++.++.+|++ |+..+++
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~ 194 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIN 194 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 589999999999999999999999998 5666553
No 476
>PLN02780 ketoreductase/ oxidoreductase
Probab=88.59 E-value=1 Score=38.59 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=32.2
Q ss_pred cCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
..|+++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence 36999999995 7899999999999999999988864
No 477
>PRK12861 malic enzyme; Reviewed
Probab=88.56 E-value=1.7 Score=41.85 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=52.4
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHHHHHhhHHHhcCCCCCCccccccCCCEEEEEeCChHHHHHHHHHhhcCC---EEEEE
Q 045521 36 GIQVTNTPDVLTDDVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---FISYR 112 (204)
Q Consensus 36 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~w~~~~~~~~~l~g~tvGIvG~G~IG~~va~~~~~fg~---~V~~~ 112 (204)
.|++.|. +.... |=-+++-+++.+|- .++.|.+.+|.+.|.|.-|..+++++...|. +++.+
T Consensus 157 ~ipvf~D-D~qGT--a~v~lA~llnal~~------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~ 221 (764)
T PRK12861 157 KIPVFHD-DQHGT--AITVSAAFINGLKV------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVT 221 (764)
T ss_pred CCCeecc-ccchH--HHHHHHHHHHHHHH------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEE
Confidence 7999998 44333 44478888888874 3567999999999999999999999999998 68777
Q ss_pred cCC
Q 045521 113 SRA 115 (204)
Q Consensus 113 ~r~ 115 (204)
|+.
T Consensus 222 D~~ 224 (764)
T PRK12861 222 DIE 224 (764)
T ss_pred cCC
Confidence 754
No 478
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=88.55 E-value=1 Score=34.70 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCEEEEEe--CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 82 SGRSVGIIG--LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG--~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.|+||+++| .+++.+.++..+..||+++.+..+..
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 489999999 48999999999999999998888865
No 479
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=88.48 E-value=1.8 Score=36.70 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=41.9
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC--------------CC-CCcceeCHHHHHHHHHcCCc
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN--------------TK-YKGALVDESELVSALLEDRL 141 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~--------------~~-~~G~lvd~~aL~~aL~~g~i 141 (204)
++|.|.| .|.||+.+++.|..-|.+|+++++..+.. .. +.+.+-|.+++.++++...+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAI 74 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCC
Confidence 4788999 69999999999998899998886532211 00 12677788888888875433
No 480
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.44 E-value=1.9 Score=36.82 Aligned_cols=66 Identities=23% Similarity=0.222 Sum_probs=49.5
Q ss_pred ccccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCCCCCCCCCcceeCHHHHHHHHH-cCCceEEEeeCCCCCC
Q 045521 78 TTKISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALL-EDRLAAAVLDVFEHEP 153 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~~~~~~~~G~lvd~~aL~~aL~-~g~i~ga~lDV~~~EP 153 (204)
.++++|++|.|=|-| .+|+++|.-+...|+++..+|...+.. +.-.+-++ .|+..++--|+.+.|-
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~----------~etv~~~~~~g~~~~y~cdis~~ee 100 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN----------EETVKEIRKIGEAKAYTCDISDREE 100 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch----------HHHHHHHHhcCceeEEEecCCCHHH
Confidence 468999999999987 589999999999999999998876432 11222222 2677888888887653
No 481
>PRK07024 short chain dehydrogenase; Provisional
Probab=88.41 E-value=0.86 Score=37.23 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=29.9
Q ss_pred CCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 83 GRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 83 g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
++++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899998 78999999999999999999888754
No 482
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.40 E-value=0.87 Score=40.63 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=32.0
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
.+++|.|||.|.+|-++|..++.+|.+|..+.+...
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 368999999999999999999999999988877543
No 483
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.38 E-value=0.72 Score=39.68 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.6
Q ss_pred CCCEEEEEeCChHHHHHHHHHhh-cC-CEEEEEcCCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEA-FG-CFISYRSRAE 116 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~-fg-~~V~~~~r~~ 116 (204)
.|.+|.|+|.|.||...+..++. +| .+|+..+++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 58999999999999999999985 54 6788877654
No 484
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=88.37 E-value=2.1 Score=38.01 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=42.2
Q ss_pred cccCCCEEEEEeC-----------------ChHHHHHHHHHhhcCCEEEEEcCCCCCCC-CC--CcceeCHHHHHHHHH
Q 045521 79 TKISGRSVGIIGL-----------------GRIGMAVAKRAEAFGCFISYRSRAEKPNT-KY--KGALVDESELVSALL 137 (204)
Q Consensus 79 ~~l~g~tvGIvG~-----------------G~IG~~va~~~~~fg~~V~~~~r~~~~~~-~~--~G~lvd~~aL~~aL~ 137 (204)
.++.||++.|-|- |.+|.++|+.+...|++|+++.+...... .+ ...+-+.+++++++.
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPGVKSIKVSTAEEMLEAAL 259 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCCcEEEEeccHHHHHHHHH
Confidence 4589999999997 57999999999999999988765432211 11 145556777755444
No 485
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.27 E-value=0.81 Score=39.62 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=28.5
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSR 114 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r 114 (204)
.|.+|.|+|.|.||-.....+|+||+. |++.+-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 589999999999999999999999985 655543
No 486
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.16 E-value=0.94 Score=42.82 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=33.4
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK 117 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~ 117 (204)
-.|++|.|||.|..|...|..|...|.+|+.+++...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4699999999999999999999999999999987543
No 487
>PRK06720 hypothetical protein; Provisional
Probab=88.14 E-value=1.1 Score=34.83 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=32.4
Q ss_pred ccCCCEEEEEeCC-hHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGLG-RIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~G-~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.||++.|.|-+ .||+.+++.+..-|++|+..+++.
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999975 599999999999999998888753
No 488
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=88.14 E-value=1.3 Score=38.34 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=42.3
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC------CCCCcceeCHHHHHHHHHc
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN------TKYKGALVDESELVSALLE 138 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~------~~~~G~lvd~~aL~~aL~~ 138 (204)
..++|.++|-|..|+++|--++.+|.+|+.+||+.... ..|.....|-++|-+-++.
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~r 73 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVER 73 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHh
Confidence 45789999999999999999999999999999986532 1233444555555544443
No 489
>PRK07102 short chain dehydrogenase; Provisional
Probab=88.13 E-value=1.5 Score=35.36 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=29.7
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
|++.|.| .|.||+.+++.+..-|.+|+..+|+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 6888999 69999999999999999999888865
No 490
>PRK06141 ornithine cyclodeaminase; Validated
Probab=88.13 E-value=0.94 Score=38.89 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=30.3
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhh-cC-CEEEEEcCCCCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEA-FG-CFISYRSRAEKP 118 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~-fg-~~V~~~~r~~~~ 118 (204)
...++|+|||.|..|+..++.+.. ++ -+|..|+|++..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~ 162 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK 162 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 357899999999999999985543 55 568999997643
No 491
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.13 E-value=0.98 Score=38.16 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=30.5
Q ss_pred cCCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 81 ISGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 81 l~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
-.|.+|.|+|.|.+|+.+++++++.|++ |...+++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~ 193 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPN 193 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3578999999999999999999999998 7766654
No 492
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=88.10 E-value=2 Score=38.99 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=41.9
Q ss_pred CEEEEEeCChHHHHHHHHHhhcCCEEEEEcCCCCCC------C-C-C-Cc------ceeCHHHHHHHHHcCCce
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN------T-K-Y-KG------ALVDESELVSALLEDRLA 142 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~fg~~V~~~~r~~~~~------~-~-~-~G------~lvd~~aL~~aL~~g~i~ 142 (204)
|+|.|+|-|.|+.++++.++.+|.+++.+....... . . + .| ...|.++|+++.++-++-
T Consensus 6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~d 79 (467)
T PRK12833 6 RKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGAD 79 (467)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCC
Confidence 799999999999999999999999987543211110 0 0 1 02 456778888888776653
No 493
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.07 E-value=1.1 Score=38.29 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.3
Q ss_pred ccccCCCEEEEEeCC---hHHHHHHHHHhhcCCEEEEEc
Q 045521 78 TTKISGRSVGIIGLG---RIGMAVAKRAEAFGCFISYRS 113 (204)
Q Consensus 78 ~~~l~g~tvGIvG~G---~IG~~va~~~~~fg~~V~~~~ 113 (204)
..++.||++.|-|.| .||+++|+.|..-|++|+..+
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~ 41 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGT 41 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEe
Confidence 357899999999996 999999999999999998754
No 494
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.04 E-value=1.3 Score=35.57 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=32.7
Q ss_pred ccCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.+.++++.|.| .|.||+.+++.|..-|++|+..+|+.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~ 41 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE 41 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999 57999999999999999999988865
No 495
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=88.04 E-value=0.97 Score=40.40 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=33.0
Q ss_pred ccCCCEEEEEeC-ChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 80 KISGRSVGIIGL-GRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 80 ~l~g~tvGIvG~-G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
.++||++.|.|. |.||+++++.+..-|++|+..+|+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~ 212 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS 212 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999999996 8999999999999999999887754
No 496
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=87.93 E-value=0.77 Score=40.85 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.1
Q ss_pred CEEEEEeCChHHHHHHHHHhhc---CCEEE
Q 045521 84 RSVGIIGLGRIGMAVAKRAEAF---GCFIS 110 (204)
Q Consensus 84 ~tvGIvG~G~IG~~va~~~~~f---g~~V~ 110 (204)
.+|||.|||+||+.+.+.+..- ..+|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evv 90 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVV 90 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEE
Confidence 5899999999999999998643 34666
No 497
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=87.91 E-value=0.66 Score=37.56 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=39.3
Q ss_pred CEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCCCCC---------CC-----CCcceeCHHHHHHHHH
Q 045521 84 RSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAEKPN---------TK-----YKGALVDESELVSALL 137 (204)
Q Consensus 84 ~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~~~~---------~~-----~~G~lvd~~aL~~aL~ 137 (204)
||+.|.| .|.||+.+++.|..-|++|+.++|+.... .. +.+.+-|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~ 69 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAID 69 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 5788999 59999999999999999998887753210 00 1166677777766554
No 498
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.88 E-value=1 Score=38.11 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=30.5
Q ss_pred CCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCC
Q 045521 82 SGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~ 115 (204)
.|.+|.|.| .|.+|+.++++++.+|++|+...++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s 172 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS 172 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 589999999 5999999999999999999877654
No 499
>PRK07775 short chain dehydrogenase; Provisional
Probab=87.83 E-value=1.7 Score=36.02 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=31.4
Q ss_pred cCCCEEEEEe-CChHHHHHHHHHhhcCCEEEEEcCCC
Q 045521 81 ISGRSVGIIG-LGRIGMAVAKRAEAFGCFISYRSRAE 116 (204)
Q Consensus 81 l~g~tvGIvG-~G~IG~~va~~~~~fg~~V~~~~r~~ 116 (204)
+.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~ 44 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRV 44 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6678999999 59999999999999999998877643
No 500
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=87.81 E-value=1.1 Score=37.36 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=30.8
Q ss_pred CCCEEEEEeCChHHHHHHHHHhhcCCE-EEEEcCC
Q 045521 82 SGRSVGIIGLGRIGMAVAKRAEAFGCF-ISYRSRA 115 (204)
Q Consensus 82 ~g~tvGIvG~G~IG~~va~~~~~fg~~-V~~~~r~ 115 (204)
.|.+|.|.|.|.+|+.++++++.+|++ |++.++.
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~ 163 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRR 163 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 689999999999999999999999999 8777654
Done!