RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045521
(204 letters)
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 266 bits (682), Expect = 5e-90
Identities = 147/258 (56%), Positives = 167/258 (64%), Gaps = 55/258 (21%)
Query: 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
GADAELID+LPKLEIV++ S GLDK+DL+KC+EKG++VTNTPDVLTDDVAD AIGL LAV
Sbjct: 76 GADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135
Query: 62 LRRFVRSE----DGE---MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
LRR + G +KLTTK SG+ VGIIGLGRIG+AVA+RAEAF C ISY SR
Sbjct: 136 LRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 195
Query: 115 AEKPNTKYK------------------------------------------------GAL 126
++KPNT Y G
Sbjct: 196 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIV 186
VDE ELVSAL+E RL A LDVFE EP+VPE+LFGLENVVLLPH SGT ETRK AD+V
Sbjct: 256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315
Query: 187 IENLEACFLNKPLLTPVV 204
+ NLEA F KPLLTPVV
Sbjct: 316 VGNLEAHFSGKPLLTPVV 333
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 265 bits (679), Expect = 2e-89
Identities = 83/258 (32%), Positives = 110/258 (42%), Gaps = 56/258 (21%)
Query: 2 GADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAV 61
G E ++ LP L I+A G DK+DL + + + I VT TP VL DDVAD I L LAV
Sbjct: 82 GLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAV 141
Query: 62 LRRFVRSE--------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
LRR + L G+ +G++GLG+IG A+A RAEAFG + Y +
Sbjct: 142 LRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWN 201
Query: 114 RAEKPNTKYK------------------------------------------------GA 125
R+ + G
Sbjct: 202 RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADI 185
+VDE L+ AL +A A LDVF +EP + E N VL+PH S T ETR A +
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKL 321
Query: 186 VIENLEACFLNKPLLTPV 203
V+ NL A F + V
Sbjct: 322 VLANLAAHFAGEKAPNTV 339
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 227 bits (582), Expect = 1e-74
Identities = 79/261 (30%), Positives = 111/261 (42%), Gaps = 61/261 (23%)
Query: 4 DAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
AE+I L P L+ +AT S G D ID+ + GI+V +TPDVL+D A+ A+ L L
Sbjct: 84 TAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNAC 143
Query: 63 RR------FVRS---EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRS 113
RR VRS L ++GR +GI G+GRIG A+A RA FG I Y +
Sbjct: 144 RRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHN 203
Query: 114 R------AEKPNTKYK-------------------------------------------- 123
R E+ +
Sbjct: 204 RTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263
Query: 124 -GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
G L+++ L+ AL L AA LDVF +EP + L+N+ L PH S T ETR A
Sbjct: 264 RGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAM 323
Query: 183 ADIVIENLEACFLNKPLLTPV 203
++I+ +EA + +
Sbjct: 324 GWLLIQGIEALNQSDVPDNLI 344
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 218 bits (558), Expect = 3e-71
Identities = 66/269 (24%), Positives = 101/269 (37%), Gaps = 69/269 (25%)
Query: 4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
+A+LI LP L++ A AG D +DL E+G+ N+ +D A+ L L+V
Sbjct: 70 NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 63 RRFVRSED-------------GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRA-EAFGCF 108
R SE K G +G +GLG I +A++A G
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 109 ISY--RSR----AEK---------------------------PNTKY------------- 122
+ Y + EK T +
Sbjct: 190 LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPG 249
Query: 123 -------KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
+G ++ + L++AL +L +A LDV E EPQV +EL +++V L H
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVA 309
Query: 176 EETRKATADIVIENLEACFLN-KPLLTPV 203
ET + + N++ L KPLLTP
Sbjct: 310 IETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 214 bits (547), Expect = 1e-69
Identities = 95/264 (35%), Positives = 124/264 (46%), Gaps = 64/264 (24%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
D E+ ++ PKL IVA + G D ID+ + ++GI VTNTPDVLTD AD A L LA R
Sbjct: 58 DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 64 R------FVRS---EDGEMGYKLT----TKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
FVRS + + + + G+++GIIGLGRIG A+AKRA+ F I
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177
Query: 111 YRSRAEKP------NTKYK----------------------------------------- 123
Y SR K N ++K
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETR 179
G +VD + LV AL E +A A LDVFE EP EELF L+NVVL PH S + R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 180 KATADIVIENLEACFLNKPLLTPV 203
+ A++V +NL A + T V
Sbjct: 298 EGMAELVAKNLIAFKRGEIPPTLV 321
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 209 bits (535), Expect = 4e-68
Identities = 85/257 (33%), Positives = 117/257 (45%), Gaps = 57/257 (22%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DAE++D L+++A S G+D +DL +E+GI+VT+TP VLT+ AD + L LAV R
Sbjct: 56 DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 64 R------FVRS---EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
R + R + L + G ++G++G+GRIG AVAKRA AFG + Y +R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 115 AEKP-NTKYK---------------------------------------------GALVD 128
KP + GALVD
Sbjct: 176 TPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD 235
Query: 129 ESELVSALLEDRLAAAVLDVFEHEPQVP-EELFGLENVVLLPHAASGTEETRKATADIVI 187
LV A L L A LDV + EP P L+ L N V+ PH S TR+ A++ +
Sbjct: 236 TEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAV 294
Query: 188 ENLEACFLNKPLLTPVV 204
ENL A + PVV
Sbjct: 295 ENLLAVLEGREPPNPVV 311
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 207 bits (528), Expect = 7e-67
Identities = 74/263 (28%), Positives = 108/263 (41%), Gaps = 63/263 (23%)
Query: 4 DAELIDSLPK-LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
E+ID +P+ ++ ++T S G D IDL CK +GI+V N P +T A+ A+ L L
Sbjct: 57 RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSA 116
Query: 63 RR------FVRS---EDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
RR +R+ E + K+ +++GI G G IG A+AKRA+ F I Y
Sbjct: 117 RRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFD 176
Query: 112 RSRAEK-------------------------------PNTKY------------------ 122
RA P T+Y
Sbjct: 177 THRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 236
Query: 123 --KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRK 180
+G LVD +V+AL RLA A DVF EP + E + L N L PH S + R+
Sbjct: 237 TARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQARE 296
Query: 181 ATADIVIENLEACFLNKPLLTPV 203
A + ++A F + +
Sbjct: 297 DMAHQANDLIDALFGGADMSYAL 319
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 202 bits (515), Expect = 8e-65
Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 63/263 (23%)
Query: 4 DAELIDSL-PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
D ++D+ L++++T S G+D + L + K++GI+V TPDVLTD A+ A+ L L
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 63 RRFVRSE----DGE-----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFG-CFISYR 112
RR + +G + ++ +VGIIGLGRIG A+A+R + FG Y
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 113 SRAEKP------NTKYK------------------------------------------- 123
R +P ++
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 124 --GALVDESELVSALLEDRLAAAVLDVFEHEP-QVPEELFGLENVVLLPHAASGTEETRK 180
G +V++ +L AL ++AAA LDV EP L L+N V+LPH S T TR
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 181 ATADIVIENLEACFLNKPLLTPV 203
+ + NL A +P+ + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSEL 328
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 194 bits (496), Expect = 6e-62
Identities = 55/272 (20%), Positives = 97/272 (35%), Gaps = 76/272 (27%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DA+ + + P+L ++ G D D+ C +G+ +T PD+LT A+ AIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 64 RFVRSE----DGE--------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY 111
++ G+ G T + +VG +G+G IG+A+A R + +G + Y
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYG----TGLDNATVGFLGMGAIGLAMADRLQGWGATLQY 173
Query: 112 RSR-------AEKPNTKYK----------------------------------------- 123
++ +
Sbjct: 174 HEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLV 233
Query: 124 ----GALVDESELVSALLEDRLAAAVLDVFEHE--------PQVPEELFGLENVVLLPHA 171
G++VDE+ +++AL +L DVFE E Q+ L N + PH
Sbjct: 234 NPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI 293
Query: 172 ASGTEETRKATADIVIENLEACFLNKPLLTPV 203
S R +N+ + + V
Sbjct: 294 GSAVRAVRLEIERCAAQNILQALAGERPINAV 325
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 188 bits (480), Expect = 7e-60
Identities = 50/256 (19%), Positives = 77/256 (30%), Gaps = 57/256 (22%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
AE + +P+L+ + +AGLD + + V D VA+ A+ L LA +
Sbjct: 41 TAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYK 99
Query: 64 RFVRSED----GE-MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RSRAE 116
R ++ + G+ I G V ++GLG IG V K A G + R+ E
Sbjct: 100 RIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE 159
Query: 117 KPNTKYK---------------------------------------------GALVDESE 131
P ++D
Sbjct: 160 GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDG 219
Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPE--ELFGLENVVLLPHAASGTEETR--KATADIVI 187
++ L E DV+ + E F L NVV P A G R + +
Sbjct: 220 VLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAV 279
Query: 188 ENLEACFLNKPLLTPV 203
NL
Sbjct: 280 RNLITYATGGRPRNIA 295
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 178 bits (454), Expect = 1e-55
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 63/263 (23%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
E++++ +L++++ SAG D IDL + ++GI VT +L++ VA+ +GL + ++R
Sbjct: 55 TREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMR 114
Query: 64 RFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY 111
+ G+K + G+ VGI+G+G IG A+A+R FG + Y
Sbjct: 115 KIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYY 174
Query: 112 ------RSRAEKPNTKY------------------------------------------- 122
+ ++ +Y
Sbjct: 175 WSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNI 234
Query: 123 -KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLE-NVVLLPHAASGTEETRK 180
+GALVDE + A+ + +L DVFE EP ELF E VL PH A E ++
Sbjct: 235 GRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQE 294
Query: 181 ATADIVIENLEACFLNKPLLTPV 203
+ENL + V
Sbjct: 295 DVGFRAVENLLKVLRGEVPEDLV 317
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 170 bits (433), Expect = 6e-52
Identities = 47/267 (17%), Positives = 81/267 (30%), Gaps = 70/267 (26%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
E I L++ T G D +DL ++ + V + VA+ + + L+++R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163
Query: 64 RFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC---- 107
++ ++ Y L VG + GRIG+AV +R F
Sbjct: 164 NYLPSHEWARKGGWNIADCVSHAYDLE----AMHVGTVAAGRIGLAVLRRLAPFDVHLHY 219
Query: 108 ---FISYRSRAEKPNTKYK----------------------------------------- 123
S ++ N +
Sbjct: 220 TDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYI 279
Query: 124 -----GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEE 177
G L D + AL RLA DV+ +P + + + PH + T
Sbjct: 280 VNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLT 339
Query: 178 TRKATADIVIENLEACFLNKPLLTPVV 204
+ A E LE F +P+ +
Sbjct: 340 AQARYAAGTREILECFFEGRPIRDEYL 366
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 165 bits (419), Expect = 1e-50
Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 60/260 (23%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
L +L+ V SAG+D + L + G+ V NT + D ++++ + L+V+R
Sbjct: 52 KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVR 111
Query: 64 RFVRSEDGEMGYK------LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY--RSRA 115
+ + + G + T+ ++G+ + I G G+IG ++A +A A G + +
Sbjct: 112 GYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGH 171
Query: 116 EK-----------------------------PNTKY--------------------KGAL 126
P T + +G
Sbjct: 172 PADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPA 231
Query: 127 VDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATAD 184
VD + L++AL +L+ A LDV E EP +P + L+ ++V++ PH + R
Sbjct: 232 VDTTALMTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFP 290
Query: 185 IVIENLEACFLNKPLLTPVV 204
I N + L+ V
Sbjct: 291 IFAANFAQFVKDGTLVRNQV 310
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 157 bits (398), Expect = 4e-47
Identities = 61/267 (22%), Positives = 94/267 (35%), Gaps = 67/267 (25%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
E ++ L I+ +G D ID+ + GI V N P ++ AD+ + L + R
Sbjct: 76 TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYR 135
Query: 64 RFV------------RSEDGEMGYKLT-TKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS 110
R +S + +I G ++GIIGLGR+G AVA RA+AFG +
Sbjct: 136 RATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL 195
Query: 111 Y------RSRAEK--------------------------PNTKY-----------KGA-- 125
+ + + +GA
Sbjct: 196 FYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL 255
Query: 126 -------LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTE 176
LVDE L AL E R+ A LDV E EP + L N++ PHAA +E
Sbjct: 256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE 315
Query: 177 ETRKATADIVIENLEACFLNKPLLTPV 203
+ + + + +
Sbjct: 316 QASIEMREEAAREIRRAITGRIPDSLK 342
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 154 bits (392), Expect = 7e-47
Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 56/248 (22%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
+ + +++ SAG+D ID+ E + +N + VA+ A L LA +
Sbjct: 40 IKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAK 98
Query: 64 RFVRSED----GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY---RSRAE 116
+ + + G TT + G+++GI+G G IG VA A+AFG + S +
Sbjct: 99 NILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ 158
Query: 117 KPNTKYK---------------------------------------------GALVDESE 131
+ + +V + +
Sbjct: 159 NVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218
Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPH-AASGTEETRKATADIVIENL 190
++ L E + DV+ +EP L N +L PH A + E + EN+
Sbjct: 219 MIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENV 276
Query: 191 EACFLNKP 198
F +
Sbjct: 277 RNFFEGEG 284
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 152 bits (385), Expect = 2e-45
Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 73/274 (26%)
Query: 3 ADAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVL 62
EL+ +P+L+++ T S G D IDL CK+KGI VT+ P + VA+ + L ++
Sbjct: 54 LTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLV 113
Query: 63 RRFVRSEDGEMGYKLTTK-------ISGRSVGIIGLGRIGMAVAKRAEAFGCFISY---- 111
+R R ED + ++ ++G+IG GRIG VA AFG +
Sbjct: 114 KRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVV 173
Query: 112 -RSRAEKPNTKYK---------------------------------------------GA 125
R ++ Y G
Sbjct: 174 KREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGK 233
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQV----------------PEELFGLENVVLLP 169
+VD L A + + LDVFE E + EL +NV++ P
Sbjct: 234 VVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITP 293
Query: 170 HAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
H A T+++ + + ++ ++A
Sbjct: 294 HIAYYTDKSLERIREETVKVVKAFVKGDLEQIKG 327
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 148 bits (376), Expect = 9e-44
Identities = 49/267 (18%), Positives = 87/267 (32%), Gaps = 70/267 (26%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
AE I L+++ T G D IDL G+ V VA+ + L ++R
Sbjct: 77 TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136
Query: 64 RFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY 111
FV + Y L G+++G +G GRIG + +R + FGC + Y
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLE----GKTIGTVGAGRIGKLLLQRLKPFGCNLLY 192
Query: 112 -------RSRAEKPNTKY------------------------------------------ 122
++ K+
Sbjct: 193 HDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLI 252
Query: 123 ----KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEE 177
+GA+++ +V A+ + DV++ +P + + N + PH + T +
Sbjct: 253 VNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTID 312
Query: 178 TRKATADIVIENLEACFLNKPLLTPVV 204
+ A + LE F + T
Sbjct: 313 AQLRYAAGTKDMLERYFKGEDFPTENY 339
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 143 bits (362), Expect = 3e-42
Identities = 78/249 (31%), Positives = 108/249 (43%), Gaps = 66/249 (26%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
+I+S PKL+++A GLD ID+ KEKGI+V N P + VA+ A+GL +V R
Sbjct: 57 TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116
Query: 64 RFVRS----EDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
+ + +G MG +L G+++GIIG GRIG VAK A A G I
Sbjct: 117 KIAFADRKMREGVWAKKEAMGIELE----GKTIGIIGFGRIGYQVAKIANALGMNILLYD 172
Query: 112 ----RSRAEKPNTKYK-------------------------------------------- 123
RA++ N K+
Sbjct: 173 PYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTS 232
Query: 124 -GALVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENVVLLPHAASGTEETRKA 181
G +VD + LV AL E +A A LDVFE EP + L +NVVL PH + T E ++
Sbjct: 233 RGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQER 292
Query: 182 TADIVIENL 190
V E +
Sbjct: 293 AGVEVAEKV 301
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 137 bits (348), Expect = 7e-40
Identities = 52/277 (18%), Positives = 88/277 (31%), Gaps = 80/277 (28%)
Query: 3 ADAELIDSLPK--LEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
AE + +L + ++ + G+D ID+ K KE G Q+TN P + +A+ A
Sbjct: 58 YIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAAR 117
Query: 61 VLRRFVRSE----------DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-FI 109
+LR+ + +G ++ + VG++G G IG + E FG I
Sbjct: 118 ILRQDKAMDEKVARHDLRWAPTIGREV----RDQVVGVVGTGHIGQVFMQIMEGFGAKVI 173
Query: 110 SY----RSRAEKPNTKY------------------------------------KGA---- 125
+Y EK +
Sbjct: 174 TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVN 233
Query: 126 -----LVDESELVSALLEDRLAAAVLDVFEHEPQVP--------------EELFGLENVV 166
LVD ++ L ++ +DV+E E + +L NV+
Sbjct: 234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVL 293
Query: 167 LLPHAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
+ P A T + +N K TPV
Sbjct: 294 VTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 135 bits (341), Expect = 9e-39
Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 67/258 (25%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
A++I++ KL++V G+D +DL KGI V NTP+ + A+ G+ + + R
Sbjct: 80 TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139
Query: 64 RFVRS----EDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC------ 107
+ ++ +DG+ MG +L G+++GI+GLGRIG VA R ++FG
Sbjct: 140 QIPQATASMKDGKWERKKFMGTELN----GKTLGILGLGRIGREVATRMQSFGMKTIGYD 195
Query: 108 -FISYRSRAEK-------------------------PNTKY------------------- 122
IS + P+T
Sbjct: 196 PIIS-PEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNC 254
Query: 123 -KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKA 181
+G +VDE L+ AL + A A LDVF EP L ENV+ PH + T+E +
Sbjct: 255 ARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSR 314
Query: 182 TADIVIENLEACFLNKPL 199
+ + K L
Sbjct: 315 CGEEIAVQFVDMVKGKSL 332
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 135 bits (341), Expect = 1e-38
Identities = 63/280 (22%), Positives = 91/280 (32%), Gaps = 83/280 (29%)
Query: 4 DAELIDSLPKLEIVATC----SAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTL 59
+L+D LPKL+I++ IDL C +KG+ V A+ L +
Sbjct: 62 TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120
Query: 60 AVLRRFV------------RSEDGEMGYKLTTKI----SGRSVGIIGLGRIGMAVAKRAE 103
A RR +S I G+++GI G G+IG VA
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180
Query: 104 AFGC-------FISYRSRAEK--------------------------PNTKY-------- 122
AFG S + RA T+
Sbjct: 181 AFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239
Query: 123 ---KGA---------LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-LFGLENVVLLP 169
A LV+E+ +V+AL R A +DVFE EP + L +EN + P
Sbjct: 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTP 299
Query: 170 HAASGTEETRKATADIVIENLEACF-------LNKPLLTP 202
H E+ + I +N+ N L P
Sbjct: 300 HIGYVERESYEMYFGIAFQNILDILQGNVDSVANPTALAP 339
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 137 bits (348), Expect = 2e-38
Identities = 68/261 (26%), Positives = 104/261 (39%), Gaps = 65/261 (24%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
DAE++ + PKL+IVA GLD +D+ +G+ V N P A+ A+ L LA R
Sbjct: 57 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 64 RFVRS----EDGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
+ + + G ++ G++VG++GLGRIG VA+R AFG ++
Sbjct: 117 QIPAADASLREHTWKRSSFSGTEIF----GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYD 172
Query: 112 ----RSRAEKPNTKY--------------------------------------------- 122
+RA + +
Sbjct: 173 PYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKAT 182
+G LVDE+ L A+ + AA LDVF EP LF L VV+ PH + T E +
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292
Query: 183 ADIVIENLEACFLNKPLLTPV 203
V E++ + + V
Sbjct: 293 GTDVAESVRLALAGEFVPDAV 313
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 133 bits (337), Expect = 3e-38
Identities = 54/275 (19%), Positives = 97/275 (35%), Gaps = 76/275 (27%)
Query: 3 ADAELIDSL--PKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
A + + + ++ + + G D ID+ K+ GI+++N P +A+ A+ TL
Sbjct: 56 YAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLY 115
Query: 61 VLRR----FVRSEDGEMGYKLTTK-----ISGRSVGIIGLGRIGMAVAKRAEAFGCFI-- 109
+LR + + G+ Y+ + ++VG++G G IG K + FG +
Sbjct: 116 LLRNMGKVQAQLQAGD--YEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173
Query: 110 --SYRSRAEKPNTKYK-------------------------------------------- 123
Y + + P+ Y
Sbjct: 174 YDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233
Query: 124 -GALVDESELVSALLEDRLAAAVLDVFEHEP--------------QVPEELFGLENVVLL 168
L+D ++S L +LA +D +E+E + +EL G+ NVVL
Sbjct: 234 RPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS 293
Query: 169 PHAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
PH A TE +++L T V
Sbjct: 294 PHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 131 bits (333), Expect = 9e-38
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 66/259 (25%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
++I+ KL+I+A GLD ID + +++ I+V P TD + IGL +A R
Sbjct: 59 TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118
Query: 64 RFVRS----EDGE----MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY---- 111
+ S + G G +L G+++GI+G GRIG V A A G +
Sbjct: 119 KMYTSMALAKSGIFKKIEGLELA----GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDIL 174
Query: 112 --RSRAEK-------------------------PNTKY--------------------KG 124
R +AEK + K +
Sbjct: 175 DIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 125 ALVDESELVSALLEDRLAAAVLDVFEHEP---QVPEELFGLENVVLLPHAASGTEETRKA 181
V+ L+ + + ++ A DVF +EP + EL E V++ H + T+E +K
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 182 TADIVIENLEACFLNKPLL 200
A++ +NL ++
Sbjct: 295 VAEMTTQNLLNAMKELGMI 313
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 131 bits (333), Expect = 1e-37
Identities = 49/276 (17%), Positives = 90/276 (32%), Gaps = 77/276 (27%)
Query: 3 ADAELIDSLPKLEI--VATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLA 60
A+ + +D KL + + T +AG D ID KE G + P + +A+ A+ +
Sbjct: 57 ANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMM 116
Query: 61 VLRRFV----RSEDGEMGYKLTTKISGRS-----VGIIGLGRIGMAVAKRAEAFGCFI-- 109
+LR R+ +K+ + + VG++GLGRIG A+ G +
Sbjct: 117 LLRHTAYTTSRTAKKN--FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG 174
Query: 110 --SYRSRAEKPNTKY--------------------------------------------- 122
+ + +
Sbjct: 175 EDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234
Query: 123 KGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEE---------------LFGLENVVL 167
+G LVD ++ A+ +L DV + E V + + V++
Sbjct: 235 RGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI 294
Query: 168 LPHAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
PH S T+E K ++ +NL+ +
Sbjct: 295 TPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 129 bits (327), Expect = 2e-36
Identities = 55/274 (20%), Positives = 86/274 (31%), Gaps = 78/274 (28%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKG--IQVTNTPDVLTDDVADAAIGLTLAV 61
E ID KL++V G D IDL + G I V VA+ + L +
Sbjct: 75 TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134
Query: 62 LRRFV------------RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC-F 108
+R FV + + Y + G+++ IG GRIG V +R F
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIE----GKTIATIGAGRIGYRVLERLVPFNPKE 190
Query: 109 ISY-------RSRAEK--------------------------PNTKY-----------KG 124
+ Y + EK TK KG
Sbjct: 191 LLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKG 250
Query: 125 A---------LVDESELVSALLEDRLAAAVLDVFEHEPQVPE-ELFGLENV-----VLLP 169
A + ++ +AL +L DV+ +P + + N + P
Sbjct: 251 AWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTP 310
Query: 170 HAASGTEETRKATADIVIENLEACFLNKPLLTPV 203
H + T + + A + LE+ F K P
Sbjct: 311 HYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 118 bits (299), Expect = 1e-32
Identities = 54/256 (21%), Positives = 97/256 (37%), Gaps = 61/256 (23%)
Query: 5 AELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLRR 64
L+ KL + AG+D + L + Q+TN + +++ G L+++R+
Sbjct: 59 KPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQ 117
Query: 65 FVRSED----GEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEK--- 117
+ + GR++ I+G G IG +A + FG + SR+ +
Sbjct: 118 LPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERA 177
Query: 118 -------------------------PNTKY--------------KGA---------LVDE 129
P T+ GA ++E
Sbjct: 178 GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237
Query: 130 SELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKATADIVI 187
+L++AL +L AVLDVFE EP +P + L+G N+++ PH ++ + A I +
Sbjct: 238 GDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFV 294
Query: 188 ENLEACFLNKPLLTPV 203
N +PL +
Sbjct: 295 RNYIRFIDGQPLDGKI 310
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 113 bits (285), Expect = 3e-30
Identities = 61/264 (23%), Positives = 94/264 (35%), Gaps = 68/264 (25%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
++I++ KL + + G +++DL ++GI V N P T VA+ IG L +LR
Sbjct: 60 TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119
Query: 64 R-FVRSE---DGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFIS--- 110
+ G ++ G+ +GIIG G IG + AE+ G ++
Sbjct: 120 GVPEANAKAHRGVGNKLAAGSFEAR----GKKLGIIGYGHIGTQLGILAESLGMYVYFYD 175
Query: 111 -YRSRAEK-------------------------PNTKY-----------KGA-------- 125
P+TK G+
Sbjct: 176 IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 235
Query: 126 -LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-----LFGLENVVLLPHAASGTEETR 179
+VD L AL LA A +DVF EP + L +NV+L PH T+E +
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295
Query: 180 KATADIVIENLEACFLNKPLLTPV 203
+ V L N L+ V
Sbjct: 296 ENIGLEVAGKLIKYSDNGSTLSAV 319
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 108 bits (271), Expect = 5e-28
Identities = 67/264 (25%), Positives = 97/264 (36%), Gaps = 68/264 (25%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
E+ + +L V S G ++++L +++GI V N P T VA+ IG + ++R
Sbjct: 71 TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130
Query: 64 R-FVRSE---DGE------MGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISY-- 111
R F RS G ++ G+++GI+G G IG V AE+ G + Y
Sbjct: 131 RIFPRSVSAHAGGWEKTAIGSREVR----GKTLGIVGYGNIGSQVGNLAESLGMTVRYYD 186
Query: 112 -RSRAEK--------------------------PNTKY-----------KGA-------- 125
+ + +T KGA
Sbjct: 187 TSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARG 246
Query: 126 -LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE-----LFGLENVVLLPHAASGTEETR 179
VD L L E LA A +DVF EP E L GLENV+L PH TEE +
Sbjct: 247 SDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQ 306
Query: 180 KATADIVIENLEACFLNKPLLTPV 203
+ V L + V
Sbjct: 307 ERIGTEVTRKLVEYSDVGSTVGAV 330
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 104 bits (262), Expect = 2e-27
Identities = 54/261 (20%), Positives = 89/261 (34%), Gaps = 66/261 (25%)
Query: 6 ELIDSLPKLEIVATCSAGLDKI-----DLVKCKEKGIQVTNTPDV-LTDDVADAAIGLTL 59
+ + +L+ V AG+D I + + I + D + + + A+ L
Sbjct: 52 VEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVL 111
Query: 60 AVLRRFVRSE----DGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRA 115
RRF + SVGI+G G +G VA+ +A+G + SR+
Sbjct: 112 HWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS 171
Query: 116 EK-------------------------------PNTKY-----------KGA-------- 125
K T GA
Sbjct: 172 RKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARG 231
Query: 126 -LVDESELVSALLEDRLAAAVLDVFEHEPQVPEE--LFGLENVVLLPHAASGTEETRKAT 182
V E++L++AL +L A+LDVF EP +P+E L+ V + PH A+ T
Sbjct: 232 VHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVT--RPAEA 288
Query: 183 ADIVIENLEACFLNKPLLTPV 203
D + + +P+ V
Sbjct: 289 IDYISRTITQLEKGEPVTGQV 309
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 100 bits (252), Expect = 2e-25
Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 67/253 (26%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
+ L+ + V T +AG D +D K+ GI + P V + L +
Sbjct: 53 NESLLSG-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111
Query: 64 RFVRSEDGEMGYKLTTKISGRSVGIIGLGRI-----------GMAV-----AKRAEAFGC 107
R G+ L R++GI+G+G + G+ + A
Sbjct: 112 R--------DGFSLR----DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEG 159
Query: 108 -------------FIS----------YRSR----AE-----KPNTKY----KGALVDESE 131
++ Y++ KP +G +VD +
Sbjct: 160 DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAA 219
Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIENLE 191
L++ L + + VLDV+E EP + L ++ H A T E + V E
Sbjct: 220 LLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLEGKARGTTQVFEAYS 278
Query: 192 ACFLNKPLLTPVV 204
A F+ + +
Sbjct: 279 A-FIGREQRVALE 290
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 100 bits (251), Expect = 2e-25
Identities = 47/236 (19%), Positives = 76/236 (32%), Gaps = 67/236 (28%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
+ + V TC+ G D +DL E GI ++ P V D +G L +
Sbjct: 50 SRAALAG-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGC-LLAMA 107
Query: 64 RFVRSEDGEMGYKLTTKISGRSVGIIGLGRI-----------GMAVA-----KRAEAFGC 107
++ ++ R+ G++G G++ G V ++A
Sbjct: 108 EVRGAD-----------LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDG 156
Query: 108 -------------FIS----------YRSR----AE-----KPNTKY----KGALVDESE 131
IS + +R +P T +GA+VD
Sbjct: 157 EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQA 216
Query: 132 LVSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPH-AASGTEETRKATADIV 186
L L LDV+E EPQ + ++ PH A E + TA I
Sbjct: 217 LRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLEGKLRGTAQIY 271
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 5e-11
Identities = 52/263 (19%), Positives = 90/263 (34%), Gaps = 81/263 (30%)
Query: 5 AELIDSLPKLEIVAT--CSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAA-----IGL 57
AE + L + + A + GL+ ++ ++ TPD D + IG+
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSN------TPD--KDYLLSIPISCPLIGV 243
Query: 58 T-LA---VLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC------ 107
LA V + + GE+ L +G S G++ + +A E+F
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQGLVT--AVAIAETDSWESFFVSVRKAI 300
Query: 108 ----FISYRSRAEKPNTKYKGALVDESE-----------LVSALLEDRLAAAVLDVFEHE 152
FI R PNT +++++S +S L ++++ V H
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 153 PQ---------------V----PEELFGLENVVLLPHAASGTEET------RKATADIVI 187
P V P+ L+GL + A SG +++ RK +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK----LKF 416
Query: 188 ENLEACFL------NKPLLTPVV 204
N FL + LL P
Sbjct: 417 SN---RFLPVASPFHSHLLVPAS 436
Score = 35.8 bits (82), Expect = 0.008
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 30/107 (28%)
Query: 102 AEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFG 161
AE G F+ Y S LV+ S++ D++ L FE+ L G
Sbjct: 58 AELVGKFLGYVSS-----------LVEPSKVGQF---DQVLNLCLTEFEN-----CYLEG 98
Query: 162 LENVVLLPH--AAS--GTEETRKATADIVIEN-LEACFL-NKPLLTP 202
++ H AA +T +I+N + A + +P
Sbjct: 99 -NDI----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Score = 35.4 bits (81), Expect = 0.012
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 126 LVDESELVSAL-LEDRLAA---AVLDVF--EHEPQVPEELFGLENVVLLPHAASGTEETR 179
LV + A L+++ + F + EP P EL G L + +S E ++
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK----FLGYVSSLVEPSK 76
Query: 180 KATADIVIENL----EACFLN 196
D V+ E C+L
Sbjct: 77 VGQFDQVLNLCLTEFENCYLE 97
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 43.4 bits (102), Expect = 1e-05
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 4 DAELIDSLPKLEIVATCSAGLDKIDLVKCKEKGIQVTNTPDVLTDDVADAAIGLTLAVLR 63
E+I+ P +V + + K+ + ++ D +A+
Sbjct: 87 TEEMIEKTPNHCVVYSGISNTYLNQC--MKKTNRTL---VKLMERD--------DIAIYN 133
Query: 64 RFVRSEDG-EMGYKLTTK-ISGRSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEKPN 119
+E M + T I G +V ++GLGR+GM+VA++ A G + R
Sbjct: 134 SIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR 193
Query: 120 TKYKGALVDESELVSALLED 139
G + L D
Sbjct: 194 IAEMGMEPFHISKAAQELRD 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 32/212 (15%), Positives = 57/212 (26%), Gaps = 71/212 (33%)
Query: 35 KGIQVTNTPD----VLTDDVADAAIGLTLAVLR-----------------RFVRSEDGEM 73
+ D +L+ + D I AV +FV +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RI 89
Query: 74 GYK-LTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESEL 132
YK L + I + +I R R N + V +
Sbjct: 90 NYKFLMSPIKTEQRQ-------------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 133 V----SALLEDR-----------------LAAAVLDVFEHEPQVPEELFGLENVVLLPHA 171
ALLE R +A V ++ + ++ ++F L N+
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NL------ 189
Query: 172 ASGTEETRKATADIVIENLEA-CFLNKPLLTP 202
+ + V+E L+ + P T
Sbjct: 190 ------KNCNSPETVLEMLQKLLYQIDPNWTS 215
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 13/133 (9%)
Query: 61 VLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNT 120
+ F+ +T ++ + G G +G+ + FG
Sbjct: 222 GIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVG------- 274
Query: 121 KYKGALVDESEL-VSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASG---TE 176
+ G++ + + L + +L + F + ++ +L+P AAS T+
Sbjct: 275 ESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIP-AASEKQLTK 333
Query: 177 ET-RKATADIVIE 188
+ A I+ E
Sbjct: 334 SNAPRVKAKIIAE 346
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 33.1 bits (76), Expect = 0.021
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 80 KISGRSVGIIGLGRIGMAVAKRAEAFGC 107
+I + +IGLGR G ++ K G
Sbjct: 3 RIKNKQFAVIGLGRFGGSIVKELHRMGH 30
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 34.0 bits (79), Expect = 0.027
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE 131
E + K+ + + G G +G K E G + + E + AL +E+
Sbjct: 201 ESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIA--EWDRNEGNYALYNENG 258
Query: 132 L-VSALLEDRLAA-AVLDVFEHEPQVPEELFGLENVVLLPHAASG---TEET-RKATADI 185
+ LL + A ++ E EE + E +++P AA T E + A +
Sbjct: 259 IDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVP-AALENVITGERAKTINAKL 317
Query: 186 VIE 188
V E
Sbjct: 318 VCE 320
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 33.0 bits (76), Expect = 0.060
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 83 GRSVGIIGLGRIG-MAVAKRAEAFGC 107
G+ VG++G+G +G M + K A A G
Sbjct: 195 GKKVGVVGIGGLGHMGI-KLAHAMGA 219
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 32.5 bits (75), Expect = 0.069
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 83 GRSVGIIGLGRIG-MAVAKRAEAFGC 107
G+ VGI+GLG IG M ++A G
Sbjct: 180 GKKVGIVGLGGIGSMGT-LISKAMGA 204
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 32.6 bits (75), Expect = 0.077
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 83 GRSVGIIGLGRIG-MAVAKRAEAFGC 107
G VG+ G G +G MAV K A A G
Sbjct: 177 GTKVGVAGFGGLGSMAV-KYAVAMGA 201
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 32.6 bits (75), Expect = 0.078
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 83 GRSVGIIGLGRIG-MAVAKRAEAFGC 107
G GI+GLG +G M V K A+A G
Sbjct: 181 GLRGGILGLGGVGHMGV-KIAKAMGH 205
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 31.8 bits (73), Expect = 0.11
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 83 GRSVGIIGLGRIG-MAVAKRAEAFGC 107
G+ +GI+GLG +G +AV K A+AFG
Sbjct: 188 GKHIGIVGLGGLGHVAV-KFAKAFGS 212
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 31.7 bits (72), Expect = 0.15
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 81 ISGRSVGIIGLGRIGMAVAKRAEAFGC 107
I G V ++GLGR GM +A+ A G
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFAALGA 181
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.4 bits (68), Expect = 0.29
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 86 VGIIGLGRIGMAVAKRAEAFGCFISYRSR-AEKPNTKYKGALVDESELVSALLEDRLAAA 144
V I G G G ++ + G + + SR + + +GA V ++
Sbjct: 22 VCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAAS---RSDVIV 78
Query: 145 VLDVFEHEPQVPEELFGLENVV 166
+ EH + E L+ V
Sbjct: 79 LAVHREHYDFLAELADSLKGRV 100
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.8 bits (66), Expect = 0.49
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 78 TTKISGRSVGIIGLGRIGMAVAKRAEAFG 106
G + I G G +G A+ E G
Sbjct: 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAG 42
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 29.8 bits (68), Expect = 0.51
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157
SE+V + +AV + + E + E
Sbjct: 235 CKIHSEVVE---DTEAVSAVQQLLDDERMLVE 263
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 0.64
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 86 VGIIGLGRIGMAVAKRAEAFGC 107
+IG G+ + + A G
Sbjct: 9 YIVIGSEAAGVGLVRELTAAGK 30
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 29.5 bits (67), Expect = 0.67
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157
SE++S + AA+ + E + E
Sbjct: 275 HPIFSEVIS---DQEAVAAIEKFVDDEKILVE 303
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 29.4 bits (67), Expect = 0.71
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE 131
E K K+ + I G G G +AK G + S G L +
Sbjct: 210 EAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGIS-------DANGGLYNPDG 262
Query: 132 L-VSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASG---TEET-RKATADIV 186
L + LL+ R + ++ + EEL + +L+P AA T + A IV
Sbjct: 263 LDIPYLLDKRDSFGMVTNLFTDVITNEELLEKDCDILVP-AAISNQITAKNAHNIQASIV 321
Query: 187 IE 188
+E
Sbjct: 322 VE 323
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase,
succinyltransferase; HET: FLC; 2.00A {Mycobacterium
tuberculosis} PDB: 2vzz_A*
Length = 218
Score = 29.0 bits (65), Expect = 0.77
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 61 VLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAE 103
+ ++ + + L + GR+VG+ L + ++ +
Sbjct: 66 LWQQLAGFKRDDWSLPLAVLVDGRAVGVQALSSKDFPITRQVD 108
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 29.4 bits (67), Expect = 0.83
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE 131
K+ ++ G V I G G +G A A+ G + + G + +E+
Sbjct: 224 AAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQ-------DHTGTVYNEAG 276
Query: 132 L-VSALLEDRLA-AAVLDVFEHEPQVPEELFGLENVVLLPHAASG---TEET-RKATADI 185
+ LL V + EP + +GL L+P AA TE+ + A I
Sbjct: 277 IDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVP-AALEKQITEQNAWRIRARI 335
Query: 186 VIE 188
V E
Sbjct: 336 VAE 338
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.9 bits (64), Expect = 1.1
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 78 TTKISGRSVGIIGLGRIGMAVAKRA 102
G + ++G G +G +A
Sbjct: 14 NLYFQGMKIAVLGTGTVGRTMAGAL 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 9 DSLPKLEIVAT 19
DS P L I AT
Sbjct: 35 DSAPALAIKAT 45
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 28.4 bits (63), Expect = 1.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 VGIIGLGRIGMAVAKRAEAFGCFISYRSR 114
VGI+G G ++A R G + SR
Sbjct: 31 VGILGSGDFARSLATRLVGSGFKVVVGSR 59
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 28.3 bits (64), Expect = 1.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 76 KLTTKISGRSVGIIGLGRIGMAVAKRAEAFGC 107
K T + V ++GL R G A A+ G
Sbjct: 2 KTITTFENKKVLVLGLARSGEAAARLLAKLGA 33
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 28.1 bits (62), Expect = 1.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 86 VGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPN 119
V IIG+G IG + + + R + P
Sbjct: 15 VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG 48
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 28.1 bits (62), Expect = 1.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 86 VGIIGLGRIGMAVAKRAEAFGCFI 109
VG+IG G IG +A+ E G I
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEI 26
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157
+D+ V D + AA+ D+FE V E
Sbjct: 258 YLDDIITVD---SDAICAAMKDLFEDVRAVAE 286
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET:
NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 27.9 bits (63), Expect = 2.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 83 GRSVGIIGLGRIGMAVA 99
R +GIIGLG +G AVA
Sbjct: 1 ARKIGIIGLGNVGAAVA 17
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 27.6 bits (62), Expect = 2.6
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 28/106 (26%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLA 142
G +V +IG G IG+ A+A+G F+ + +A RL
Sbjct: 169 GTTVLVIGAGPIGLVSVLAAKAYGAFV----------------------VCTARSPRRLE 206
Query: 143 AAVLDVFEHEPQVPEELFGLENVVLLPHAASGTEETRKATADIVIE 188
A + V +++ +A G ++ I+
Sbjct: 207 VAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL------PNVTID 246
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 27.9 bits (61), Expect = 2.6
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 10/101 (9%)
Query: 85 SVGIIGLGRIGMAVAKRAEAFGCFISYRSR--------AEKPNTKY--KGALVDESELVS 134
+ +G G + + + SR AE K + + +V
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 135 ALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASGT 175
++ DR V + V G + + + +
Sbjct: 64 VIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRAS 104
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 27.6 bits (62), Expect = 2.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFGC 107
G + + GLG +G++ + G
Sbjct: 196 GSTCAVFGLGCVGLSAIIGCKIAGA 220
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 27.5 bits (62), Expect = 2.9
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157
LVD+ LVS ED + +++ + + + E
Sbjct: 267 LVDDIVLVS---EDEIRNSMIALIQRNKVITE 295
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 27.6 bits (62), Expect = 2.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 126 LVDESELVSALLEDRLAAAVLDVFEHEPQVPE 157
L+D LV+ D ++AA+ DV++ + E
Sbjct: 287 LIDGMVLVA---NDGISAAIKDVYDEGRNILE 315
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 27.5 bits (62), Expect = 3.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFGC 107
G + GLG +G+AV + G
Sbjct: 191 GSVCAVFGLGGVGLAVIMGCKVAGA 215
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 27.4 bits (60), Expect = 3.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 85 SVGIIGLGRIGMAVAKR 101
+ +IG G + +AK
Sbjct: 12 PIVLIGAGNLATNLAKA 28
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 27.3 bits (61), Expect = 3.6
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 67 RSEDGEMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGAL 126
+ + + G+K + V + G G++G A+ A G IS R + + ++
Sbjct: 6 YANENQFGFKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE---SI 62
Query: 127 VDESELV 133
+ +++V
Sbjct: 63 LANADVV 69
>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural
genomics, PSI, protein structure initiative; 1.35A
{Streptococcus pneumoniae} SCOP: d.192.1.1
Length = 100
Score = 26.2 bits (58), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 62 LRRFVRSEDGEMGYKLTTKISGRSV 86
L R V++++G++ T K +GR
Sbjct: 26 LLRIVKNKEGQVFIDPTGKANGRGA 50
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 27.2 bits (61), Expect = 3.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFGC 107
G + + GLG +G+A + G
Sbjct: 193 GSTCAVFGLGAVGLAAVMGCHSAGA 217
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 27.4 bits (60), Expect = 3.9
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 86 VGIIGLGRIGMAVAKR 101
+ I +G G +
Sbjct: 23 IAFIAVGLRGQTHVEN 38
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 27.2 bits (60), Expect = 3.9
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 84 RSVGIIGLGRIGMAVAKRAEAFGC--FISYRSRAEKPNTKYKGA 125
++ G G +++ G + R+ + + GA
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGA 49
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 27.1 bits (61), Expect = 4.0
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE 131
+ + + G V + GLG++G AVA AE G + + G +
Sbjct: 207 ALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVA-------TSMGGMYAPEG 259
Query: 132 L-VSALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASG---TEET-RKATADIV 186
L V+ +L A L PEE+FGLE VL+ AA + R+ A V
Sbjct: 260 LDVAEVLSAYEATGSLPRL---DLAPEEVFGLEAEVLVL-AAREGALDGDRARQVQAQAV 315
Query: 187 IE 188
+E
Sbjct: 316 VE 317
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA
polymerase beta motif; 2.00A {Escherichia coli} SCOP:
a.24.16.4 d.218.1.9
Length = 440
Score = 27.1 bits (60), Expect = 4.1
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 49 DVADAAIGLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGRIGM 96
+A+ I L E G + + + I+G+G++G
Sbjct: 121 YLAETLIVAARDWLYDACCREWGT---PCNAQGEAQPLLILGMGKLGG 165
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA,
structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio
cholerae}
Length = 170
Score = 26.9 bits (59), Expect = 4.2
Identities = 14/83 (16%), Positives = 32/83 (38%)
Query: 103 EAFGCFISYRSRAEKPNTKYKGALVDESELVSALLEDRLAAAVLDVFEHEPQVPEELFGL 162
+ +G + +Y S + +L+S ++ ++++ F ++P+ + L
Sbjct: 72 KVYGLYTNYESDFTGAFDVIACSDTLSPQLLSESVKTKVSSGKYVTFSATGEMPQVVIDL 131
Query: 163 ENVVLLPHAASGTEETRKATADI 185
N V A+ R T D
Sbjct: 132 WNEVWNYFASEHCPHKRAYTTDF 154
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 27.0 bits (59), Expect = 4.9
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 86 VGIIGLGRIGMAVAKRA 102
V + G G IG VA
Sbjct: 4 VAVNGYGTIGKRVADAI 20
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 26.8 bits (60), Expect = 5.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFGC 107
G + + GLG +G + +A G
Sbjct: 192 GSTCAVFGLGGVGFSAIVGCKAAGA 216
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 26.8 bits (60), Expect = 5.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFGC 107
G + + GLG +G++V +A G
Sbjct: 192 GSTCAVFGLGGVGLSVIMGCKAAGA 216
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 26.7 bits (60), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 71 GEMGYKLTTKISGRSVGIIGLGRIGMAVA 99
++ YK T I + + IIG G+IG +A
Sbjct: 2 KKISYKYNTVIMRKKISIIGAGQIGSTIA 30
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 26.7 bits (60), Expect = 5.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 82 SGRSVGIIGLGRIGMAVAKRAEAFGC 107
G++V IIGLG G++ A G
Sbjct: 4 QGKNVVIIGLGLTGLSCVDFFLARGV 29
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 26.8 bits (60), Expect = 5.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 83 GRSVGIIGLGRIGMAVAKRAEAFG 106
G++V I G G +G+ A + G
Sbjct: 196 GKTVVIQGAGPLGLFGVVIARSLG 219
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 26.4 bits (59), Expect = 6.8
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 29/118 (24%)
Query: 75 YKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESELVS 134
++ + G +V + GLG +G ++A A G + LV+
Sbjct: 167 HRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQL----------------------LVA 204
Query: 135 ALLEDRLAAAVLDVFEHEPQVPEELFGLENVVLLPHAASG---TEET-RKATADIVIE 188
+R+A A H E++ V P A G T E R +V
Sbjct: 205 DTDTERVAHA--VALGHTAVALEDVLSTPCDVFAP-CAMGGVITTEVARTLDCSVVAG 259
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 26.5 bits (59), Expect = 6.8
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 86 VGIIGLGRIG 95
GI+G+G IG
Sbjct: 26 AGIVGIGMIG 35
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 26.3 bits (58), Expect = 7.3
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 56 GLTLAVLRRFVRSEDGEMGYKLTTKISGRSVGIIGLGR-IGMAVAKRAEAFGCFISYRSR 114
G +A + + G T +++G +V I G R IG A+A +A G I ++
Sbjct: 18 GSHMASMTGGQQMGRGSAMLPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAK 77
Query: 115 AEKPNTKYKGAL 126
+P+ K G +
Sbjct: 78 TAQPHPKLLGTI 89
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 26.5 bits (59), Expect = 7.8
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 86 VGIIGLGRIG 95
+G+IGLGRIG
Sbjct: 5 IGVIGLGRIG 14
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 26.1 bits (58), Expect = 7.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 86 VGIIGLGRIG 95
IIGLGR+G
Sbjct: 11 AAIIGLGRLG 20
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 26.1 bits (58), Expect = 8.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 86 VGIIGLGRIG 95
+G+IG G IG
Sbjct: 5 IGVIGTGAIG 14
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid,
biosynthesis, plant protein; HET: NAP; 1.70A {Medicago
sativa}
Length = 312
Score = 26.0 bits (58), Expect = 8.4
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 20 CSAGLDKIDLVK-CKEKGIQVT-----------NTPDVLTDDV 50
+ + L + C GI +T +V+ +D+
Sbjct: 191 MNLAWQQKKLREFCNAHGIVLTAFSPVRKGASRGPNEVMENDM 233
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 26.3 bits (59), Expect = 8.6
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 72 EMGYKLTTKISGRSVGIIGLGRIGMAVAKRAEAFGCFISYRSRAEKPNTKYKGALVDESE 131
EM KL I G++V I G+G +G A E G + S G +
Sbjct: 199 EMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS-------DINGVAYRKEG 251
Query: 132 L-VSALLEDRLA--AAVLDVFEHEPQV-----PEELFGLENVVLLPHAASG---TEET-R 179
L V + +++ A++++F + P+ +F L+ + +P AA +
Sbjct: 252 LNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVP-AAIENVIRGDNAG 310
Query: 180 KATADIVIE 188
A +V+E
Sbjct: 311 LVKARLVVE 319
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 26.3 bits (58), Expect = 9.1
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 86 VGIIGLGRIGMAVAKRAEA 104
GI GLG G + A
Sbjct: 5 FGICGLGFAGSVLMAPAMR 23
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 25.9 bits (58), Expect = 9.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 79 TKISGRSVGIIGLGRIGMAVA 99
K G V +IG G +G + A
Sbjct: 2 NKFKGNKVVLIGNGAVGSSYA 22
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 26.1 bits (58), Expect = 9.7
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 86 VGIIGLGRIG 95
+ + G GRIG
Sbjct: 7 IALFGAGRIG 16
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.375
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,171,613
Number of extensions: 196989
Number of successful extensions: 808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 202
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)