Query 045522
Match_columns 246
No_of_seqs 206 out of 2099
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-28 3E-33 235.8 17.5 194 44-246 105-320 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 5.6E-26 1.2E-30 194.2 7.3 140 100-245 1-159 (287)
3 PLN03210 Resistant to P. syrin 99.8 4.4E-20 9.5E-25 184.0 14.0 147 91-245 180-353 (1153)
4 PF05729 NACHT: NACHT domain 99.2 4E-11 8.7E-16 93.6 9.0 123 123-245 1-152 (166)
5 PRK00411 cdc6 cell division co 99.2 1.6E-10 3.5E-15 103.3 11.5 105 92-198 27-150 (394)
6 TIGR02928 orc1/cdc6 family rep 99.1 8.5E-10 1.8E-14 97.6 11.1 103 94-198 14-141 (365)
7 cd00009 AAA The AAA+ (ATPases 99.1 1.2E-09 2.5E-14 82.8 9.1 122 98-227 1-131 (151)
8 PF13173 AAA_14: AAA domain 99.1 7E-10 1.5E-14 83.7 7.7 115 123-244 3-123 (128)
9 COG2256 MGS1 ATPase related to 99.0 6.4E-10 1.4E-14 96.8 7.5 136 91-246 26-166 (436)
10 PF01637 Arch_ATPase: Archaeal 98.9 5.8E-10 1.3E-14 91.7 3.4 44 97-146 1-44 (234)
11 PRK12402 replication factor C 98.9 6.8E-09 1.5E-13 90.7 10.0 143 95-244 15-185 (337)
12 KOG2028 ATPase related to the 98.9 2.7E-09 5.8E-14 91.9 6.5 119 120-245 160-283 (554)
13 PRK07003 DNA polymerase III su 98.9 1.8E-08 3.8E-13 95.0 11.5 144 95-245 16-180 (830)
14 PF13401 AAA_22: AAA domain; P 98.9 4.8E-09 1E-13 78.9 5.9 103 121-225 3-125 (131)
15 PF13191 AAA_16: AAA ATPase do 98.8 3E-09 6.6E-14 84.6 4.7 51 96-149 1-51 (185)
16 PRK06893 DNA replication initi 98.8 5.9E-09 1.3E-13 86.5 6.5 113 122-246 39-164 (229)
17 TIGR03015 pepcterm_ATPase puta 98.8 1.1E-07 2.3E-12 80.5 13.4 101 122-225 43-165 (269)
18 PRK12323 DNA polymerase III su 98.8 3E-08 6.4E-13 92.3 10.0 144 95-245 16-185 (700)
19 PRK13342 recombination factor 98.8 1.8E-08 4E-13 90.7 8.1 134 95-245 12-153 (413)
20 PLN03025 replication factor C 98.8 4.6E-08 9.9E-13 85.2 10.0 143 95-245 13-160 (319)
21 PRK14961 DNA polymerase III su 98.8 9.4E-08 2E-12 84.7 12.1 144 95-245 16-180 (363)
22 PRK05564 DNA polymerase III su 98.8 9.5E-08 2E-12 83.0 11.8 144 95-245 4-154 (313)
23 TIGR00635 ruvB Holliday juncti 98.8 1.2E-08 2.7E-13 88.0 5.9 137 95-245 4-161 (305)
24 cd01128 rho_factor Transcripti 98.8 1.7E-08 3.7E-13 84.6 6.4 75 122-197 16-114 (249)
25 PRK14960 DNA polymerase III su 98.7 8.9E-08 1.9E-12 89.3 11.5 144 95-245 15-179 (702)
26 PRK00440 rfc replication facto 98.7 1E-07 2.2E-12 82.6 11.2 142 95-244 17-162 (319)
27 PRK14957 DNA polymerase III su 98.7 8.1E-08 1.8E-12 88.7 10.9 144 95-245 16-180 (546)
28 PRK06645 DNA polymerase III su 98.7 1.2E-07 2.6E-12 87.0 11.9 144 95-245 21-189 (507)
29 TIGR03420 DnaA_homol_Hda DnaA 98.7 3.5E-08 7.6E-13 81.3 7.6 127 101-245 23-161 (226)
30 PRK04195 replication factor C 98.7 1.1E-07 2.4E-12 87.2 11.1 140 95-244 14-161 (482)
31 PRK00080 ruvB Holliday junctio 98.7 2E-08 4.3E-13 87.8 5.6 91 95-199 25-115 (328)
32 PRK13341 recombination factor 98.7 4.2E-08 9E-13 93.5 8.1 135 95-245 28-170 (725)
33 PF05496 RuvB_N: Holliday junc 98.7 1.9E-08 4.1E-13 82.1 4.8 104 95-212 24-127 (233)
34 PRK14949 DNA polymerase III su 98.7 1.4E-07 2.9E-12 90.6 10.8 144 95-245 16-180 (944)
35 PHA02544 44 clamp loader, smal 98.7 1.6E-07 3.5E-12 81.4 10.3 120 95-226 21-141 (316)
36 PRK14962 DNA polymerase III su 98.7 1.9E-07 4.2E-12 85.1 11.0 144 95-245 14-178 (472)
37 COG1474 CDC6 Cdc6-related prot 98.6 2.3E-07 5E-12 82.0 10.6 113 95-211 17-148 (366)
38 PRK14963 DNA polymerase III su 98.6 3.2E-07 6.9E-12 84.4 11.8 144 95-245 14-177 (504)
39 PRK14951 DNA polymerase III su 98.6 2.3E-07 5E-12 86.8 10.9 144 95-245 16-185 (618)
40 PRK14964 DNA polymerase III su 98.6 3.1E-07 6.7E-12 83.8 11.3 144 95-245 13-177 (491)
41 PRK07994 DNA polymerase III su 98.6 2E-07 4.4E-12 87.5 10.3 144 95-245 16-180 (647)
42 PRK14958 DNA polymerase III su 98.6 2.1E-07 4.5E-12 85.7 9.9 143 95-244 16-179 (509)
43 PRK11331 5-methylcytosine-spec 98.6 3.8E-07 8.3E-12 81.8 10.8 106 95-211 175-298 (459)
44 PRK09376 rho transcription ter 98.6 5.2E-08 1.1E-12 85.8 5.2 74 123-197 170-267 (416)
45 PRK14956 DNA polymerase III su 98.6 2.3E-07 4.9E-12 84.1 9.4 144 95-245 18-182 (484)
46 PRK08084 DNA replication initi 98.6 4.7E-07 1E-11 75.5 10.1 112 122-245 45-169 (235)
47 PRK04841 transcriptional regul 98.6 5.5E-07 1.2E-11 88.5 12.3 117 95-226 14-162 (903)
48 PRK08903 DnaA regulatory inact 98.6 2.5E-07 5.4E-12 76.5 8.4 108 122-245 42-159 (227)
49 PRK07764 DNA polymerase III su 98.6 4.9E-07 1.1E-11 87.4 11.1 143 95-245 15-181 (824)
50 PTZ00112 origin recognition co 98.6 3.2E-07 6.9E-12 87.6 9.5 103 95-198 755-881 (1164)
51 PTZ00202 tuzin; Provisional 98.6 8.2E-07 1.8E-11 79.1 11.4 79 91-180 258-336 (550)
52 PRK08727 hypothetical protein; 98.5 5.7E-07 1.2E-11 74.9 9.7 111 123-245 42-164 (233)
53 PRK08691 DNA polymerase III su 98.5 7.9E-07 1.7E-11 83.6 11.5 143 95-244 16-179 (709)
54 PRK14952 DNA polymerase III su 98.5 9E-07 1.9E-11 82.5 11.6 144 95-245 13-179 (584)
55 TIGR02397 dnaX_nterm DNA polym 98.5 1.5E-06 3.1E-11 76.6 12.5 142 95-244 14-177 (355)
56 PRK14969 DNA polymerase III su 98.5 1.2E-06 2.5E-11 81.2 12.2 143 95-244 16-179 (527)
57 PRK05642 DNA replication initi 98.5 6.6E-07 1.4E-11 74.5 9.5 112 122-245 45-168 (234)
58 PF00004 AAA: ATPase family as 98.5 4.1E-07 8.8E-12 68.1 7.5 93 125-226 1-112 (132)
59 PRK09111 DNA polymerase III su 98.5 9.5E-07 2.1E-11 82.7 11.2 144 95-245 24-193 (598)
60 PRK14955 DNA polymerase III su 98.5 5.2E-07 1.1E-11 80.9 9.1 142 95-244 16-187 (397)
61 PRK05896 DNA polymerase III su 98.5 8E-07 1.7E-11 82.6 10.0 144 95-245 16-180 (605)
62 PRK07940 DNA polymerase III su 98.5 1.4E-06 3.1E-11 77.7 11.1 149 95-245 5-178 (394)
63 TIGR00678 holB DNA polymerase 98.4 3.5E-06 7.6E-11 67.6 11.6 122 122-245 14-157 (188)
64 PRK14954 DNA polymerase III su 98.4 2.1E-06 4.5E-11 80.7 11.1 143 95-245 16-188 (620)
65 PRK09087 hypothetical protein; 98.4 7.8E-07 1.7E-11 73.7 7.3 102 122-245 44-155 (226)
66 TIGR00767 rho transcription te 98.4 5.7E-07 1.2E-11 79.6 6.5 74 123-197 169-266 (415)
67 TIGR01242 26Sp45 26S proteasom 98.4 3.6E-07 7.8E-12 81.0 5.2 96 95-197 122-226 (364)
68 PRK14970 DNA polymerase III su 98.4 3.7E-06 8E-11 74.6 11.3 144 95-245 17-169 (367)
69 PRK14959 DNA polymerase III su 98.4 2.2E-06 4.7E-11 80.1 10.1 144 95-245 16-180 (624)
70 PRK14971 DNA polymerase III su 98.3 5.1E-06 1.1E-10 78.2 11.8 143 95-245 17-182 (614)
71 PRK08116 hypothetical protein; 98.3 1.7E-06 3.7E-11 73.5 7.7 95 123-226 115-221 (268)
72 PF13177 DNA_pol3_delta2: DNA 98.3 1.1E-05 2.4E-10 63.3 11.9 139 99-244 1-162 (162)
73 PF00308 Bac_DnaA: Bacterial d 98.3 1.2E-06 2.5E-11 72.3 6.1 118 121-245 33-168 (219)
74 PRK08451 DNA polymerase III su 98.3 9.5E-06 2.1E-10 74.8 12.5 144 95-245 14-178 (535)
75 COG2909 MalT ATP-dependent tra 98.3 1.1E-05 2.4E-10 76.5 13.0 121 94-226 18-170 (894)
76 PRK14965 DNA polymerase III su 98.3 4.7E-06 1E-10 78.1 10.6 143 95-244 16-179 (576)
77 PRK06620 hypothetical protein; 98.3 2.1E-06 4.5E-11 70.5 7.2 97 123-245 45-149 (214)
78 PRK07471 DNA polymerase III su 98.3 1.1E-05 2.4E-10 71.4 12.2 144 95-245 19-202 (365)
79 PF05673 DUF815: Protein of un 98.3 3.7E-06 8.1E-11 69.6 8.5 127 91-229 23-154 (249)
80 PRK14953 DNA polymerase III su 98.3 9.7E-06 2.1E-10 74.4 12.1 143 95-244 16-179 (486)
81 TIGR03345 VI_ClpV1 type VI sec 98.3 4.6E-06 1E-10 81.3 10.1 94 95-198 187-292 (852)
82 PRK09112 DNA polymerase III su 98.3 1.1E-05 2.4E-10 71.1 11.4 146 93-245 21-202 (351)
83 PRK07133 DNA polymerase III su 98.3 9.3E-06 2E-10 77.1 11.4 144 95-245 18-179 (725)
84 TIGR02881 spore_V_K stage V sp 98.3 7.9E-06 1.7E-10 69.1 9.9 50 96-145 7-65 (261)
85 TIGR02639 ClpA ATP-dependent C 98.2 6E-06 1.3E-10 79.6 10.2 92 95-197 182-285 (731)
86 PRK06647 DNA polymerase III su 98.2 1.4E-05 3.1E-10 74.5 12.1 143 95-245 16-180 (563)
87 PRK06305 DNA polymerase III su 98.2 8.1E-06 1.8E-10 74.3 10.2 143 95-245 17-182 (451)
88 PRK14950 DNA polymerase III su 98.2 1.5E-05 3.2E-10 75.0 12.2 143 95-244 16-180 (585)
89 KOG0989 Replication factor C, 98.2 1.9E-06 4E-11 73.0 5.2 145 95-245 36-190 (346)
90 KOG2543 Origin recognition com 98.2 9.2E-06 2E-10 70.8 9.4 98 93-198 4-127 (438)
91 PRK03992 proteasome-activating 98.2 1.9E-06 4.1E-11 77.1 5.4 93 95-197 131-235 (389)
92 COG0466 Lon ATP-dependent Lon 98.2 5E-07 1.1E-11 84.1 1.6 99 95-198 323-429 (782)
93 PRK14948 DNA polymerase III su 98.2 2.1E-05 4.5E-10 74.2 12.3 143 95-244 16-181 (620)
94 PRK08181 transposase; Validate 98.2 3.5E-06 7.5E-11 71.5 6.1 95 123-225 107-208 (269)
95 COG1373 Predicted ATPase (AAA+ 98.2 2.2E-05 4.7E-10 70.4 11.2 110 124-244 39-155 (398)
96 PRK12377 putative replication 98.2 6E-06 1.3E-10 69.2 7.1 95 123-225 102-205 (248)
97 PRK05563 DNA polymerase III su 98.1 3.7E-05 8E-10 71.8 12.7 142 95-244 16-179 (559)
98 PRK14087 dnaA chromosomal repl 98.1 1E-05 2.2E-10 73.6 8.6 118 122-245 141-277 (450)
99 PRK12422 chromosomal replicati 98.1 8.9E-06 1.9E-10 73.9 8.0 116 122-245 141-273 (445)
100 PRK08058 DNA polymerase III su 98.1 2.2E-05 4.8E-10 68.7 10.2 142 96-245 6-171 (329)
101 COG0470 HolB ATPase involved i 98.1 3E-05 6.5E-10 67.2 10.7 141 96-241 2-166 (325)
102 TIGR00362 DnaA chromosomal rep 98.1 1.7E-05 3.7E-10 71.3 9.2 97 122-225 136-241 (405)
103 CHL00095 clpC Clp protease ATP 98.1 9.3E-06 2E-10 79.2 7.8 91 95-196 179-281 (821)
104 smart00382 AAA ATPases associa 98.1 3.4E-05 7.4E-10 57.4 9.4 38 123-162 3-40 (148)
105 PRK06526 transposase; Provisio 98.1 5.6E-06 1.2E-10 69.7 5.4 94 123-225 99-200 (254)
106 PRK14086 dnaA chromosomal repl 98.1 3.1E-05 6.6E-10 72.3 10.6 118 122-245 314-448 (617)
107 CHL00181 cbbX CbbX; Provisiona 98.1 2.7E-05 5.9E-10 66.8 9.6 138 96-245 24-198 (287)
108 TIGR02903 spore_lon_C ATP-depe 98.1 2.3E-05 4.9E-10 74.0 9.7 46 95-146 154-199 (615)
109 PRK10787 DNA-binding ATP-depen 98.1 3.6E-06 7.8E-11 81.3 4.2 50 95-144 322-371 (784)
110 PRK14088 dnaA chromosomal repl 98.0 2.9E-05 6.3E-10 70.6 9.8 97 122-224 130-235 (440)
111 PRK10865 protein disaggregatio 98.0 1.3E-05 2.8E-10 78.4 7.8 93 95-197 178-282 (857)
112 TIGR03346 chaperone_ClpB ATP-d 98.0 3E-05 6.4E-10 76.0 10.3 128 95-225 565-717 (852)
113 PRK00149 dnaA chromosomal repl 98.0 2.4E-05 5.3E-10 71.3 9.1 117 122-245 148-282 (450)
114 COG2255 RuvB Holliday junction 98.0 7.4E-06 1.6E-10 68.8 5.2 102 95-210 26-127 (332)
115 TIGR03345 VI_ClpV1 type VI sec 98.0 9.9E-06 2.1E-10 79.1 6.8 124 95-225 566-718 (852)
116 PRK09183 transposase/IS protei 98.0 1.4E-05 3.1E-10 67.5 6.8 94 123-225 103-205 (259)
117 PRK11034 clpA ATP-dependent Cl 98.0 2.2E-05 4.8E-10 75.5 8.8 92 95-197 186-289 (758)
118 COG2607 Predicted ATPase (AAA+ 98.0 0.00021 4.5E-09 58.9 12.3 119 95-225 60-182 (287)
119 PRK08939 primosomal protein Dn 98.0 3.1E-05 6.8E-10 67.0 8.0 117 99-225 135-260 (306)
120 PRK10536 hypothetical protein; 98.0 4.8E-05 1E-09 63.7 8.7 121 95-226 55-213 (262)
121 TIGR03346 chaperone_ClpB ATP-d 98.0 1.8E-05 4E-10 77.5 7.2 93 95-197 173-277 (852)
122 TIGR02639 ClpA ATP-dependent C 98.0 1.8E-05 3.8E-10 76.4 6.9 121 95-225 454-603 (731)
123 KOG1969 DNA replication checkp 97.9 3.2E-05 7E-10 72.4 8.2 88 118-210 322-411 (877)
124 TIGR02880 cbbX_cfxQ probable R 97.9 2.7E-05 5.9E-10 66.7 7.2 115 123-245 59-197 (284)
125 PRK08118 topology modulation p 97.9 3.9E-06 8.5E-11 66.2 1.8 35 124-158 3-38 (167)
126 PF07728 AAA_5: AAA domain (dy 97.9 6.3E-06 1.4E-10 62.7 2.9 81 125-211 2-90 (139)
127 PRK07952 DNA replication prote 97.9 4.6E-05 9.9E-10 63.8 8.1 95 122-225 99-204 (244)
128 COG0593 DnaA ATPase involved i 97.9 6.5E-05 1.4E-09 66.9 9.4 117 121-245 112-246 (408)
129 KOG2227 Pre-initiation complex 97.9 4E-05 8.7E-10 68.4 8.0 128 93-222 148-293 (529)
130 CHL00095 clpC Clp protease ATP 97.9 3.1E-05 6.6E-10 75.7 8.0 128 95-225 509-661 (821)
131 PF01695 IstB_IS21: IstB-like 97.9 5.1E-06 1.1E-10 66.3 2.2 94 123-226 48-150 (178)
132 PRK05707 DNA polymerase III su 97.9 0.00012 2.7E-09 63.9 10.9 123 121-245 21-167 (328)
133 PRK06921 hypothetical protein; 97.9 1.4E-05 2.9E-10 67.9 4.8 96 122-225 117-224 (266)
134 TIGR02640 gas_vesic_GvpN gas v 97.9 4.4E-05 9.6E-10 64.6 7.7 99 123-226 22-161 (262)
135 PF02562 PhoH: PhoH-like prote 97.9 2.5E-05 5.4E-10 63.5 5.8 117 100-227 5-157 (205)
136 PRK06835 DNA replication prote 97.9 3.6E-05 7.8E-10 67.2 6.9 95 123-225 184-288 (329)
137 PF00158 Sigma54_activat: Sigm 97.9 4E-05 8.6E-10 60.5 6.6 123 97-226 1-144 (168)
138 PRK10865 protein disaggregatio 97.9 5.1E-05 1.1E-09 74.3 8.3 128 95-225 568-720 (857)
139 PF05621 TniB: Bacterial TniB 97.8 0.0001 2.3E-09 62.9 8.9 131 92-225 31-190 (302)
140 PRK07399 DNA polymerase III su 97.8 0.00018 4E-09 62.5 10.6 143 95-245 4-184 (314)
141 KOG0991 Replication factor C, 97.8 3.1E-05 6.8E-10 63.5 5.4 110 95-210 27-137 (333)
142 PF14532 Sigma54_activ_2: Sigm 97.8 1.9E-05 4.1E-10 60.2 3.9 108 98-226 1-110 (138)
143 smart00763 AAA_PrkA PrkA AAA d 97.8 1.5E-05 3.2E-10 69.8 3.5 52 95-146 51-102 (361)
144 KOG2004 Mitochondrial ATP-depe 97.8 2.3E-05 5E-10 73.2 4.9 96 94-197 410-516 (906)
145 COG3899 Predicted ATPase [Gene 97.8 8.1E-05 1.8E-09 72.8 8.8 47 96-145 1-47 (849)
146 PRK13531 regulatory ATPase Rav 97.8 6.2E-05 1.3E-09 68.4 7.4 105 95-211 20-132 (498)
147 PRK11034 clpA ATP-dependent Cl 97.8 7.3E-05 1.6E-09 72.0 8.2 124 95-224 458-606 (758)
148 PF04665 Pox_A32: Poxvirus A32 97.8 0.00026 5.6E-09 58.9 10.3 35 123-159 14-48 (241)
149 PTZ00454 26S protease regulato 97.8 7.4E-05 1.6E-09 67.0 7.5 92 96-197 146-249 (398)
150 COG1484 DnaC DNA replication p 97.8 4.7E-05 1E-09 64.1 5.8 95 122-225 105-208 (254)
151 PLN00020 ribulose bisphosphate 97.8 4.2E-05 9.1E-10 67.1 5.6 73 120-197 146-223 (413)
152 COG2812 DnaX DNA polymerase II 97.8 3.3E-05 7.2E-10 70.7 4.9 144 95-245 16-180 (515)
153 PF12775 AAA_7: P-loop contain 97.7 6E-05 1.3E-09 64.2 5.7 91 104-203 22-117 (272)
154 COG0542 clpA ATP-binding subun 97.7 7.6E-05 1.6E-09 71.2 6.7 125 95-225 491-643 (786)
155 KOG0741 AAA+-type ATPase [Post 97.7 0.00016 3.4E-09 65.8 8.2 116 119-245 535-674 (744)
156 cd01120 RecA-like_NTPases RecA 97.7 0.00012 2.5E-09 56.4 6.5 39 124-164 1-39 (165)
157 TIGR03689 pup_AAA proteasome A 97.7 0.0001 2.2E-09 67.8 6.4 102 95-197 182-300 (512)
158 PHA00729 NTP-binding motif con 97.6 0.00056 1.2E-08 56.3 10.1 24 122-145 17-40 (226)
159 COG1222 RPT1 ATP-dependent 26S 97.6 0.0001 2.2E-09 63.9 5.9 127 96-229 152-303 (406)
160 PRK11608 pspF phage shock prot 97.6 0.00024 5.1E-09 62.1 8.3 123 96-225 7-150 (326)
161 TIGR02974 phageshock_pspF psp 97.6 0.00036 7.8E-09 61.1 8.8 122 97-225 1-143 (329)
162 PF13207 AAA_17: AAA domain; P 97.6 5.1E-05 1.1E-09 56.0 2.9 22 124-145 1-22 (121)
163 TIGR01817 nifA Nif-specific re 97.6 0.00033 7.2E-09 65.3 8.9 126 93-225 194-340 (534)
164 PRK07261 topology modulation p 97.6 0.00015 3.2E-09 57.4 5.6 53 124-176 2-55 (171)
165 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00023 4.9E-09 60.4 6.9 71 123-195 70-172 (274)
166 COG1875 NYN ribonuclease and A 97.6 0.0003 6.6E-09 61.3 7.7 119 100-227 229-389 (436)
167 PHA02244 ATPase-like protein 97.6 0.00038 8.3E-09 61.3 8.4 91 124-225 121-230 (383)
168 PRK05022 anaerobic nitric oxid 97.6 0.00041 8.9E-09 64.3 9.2 126 94-226 186-332 (509)
169 TIGR00602 rad24 checkpoint pro 97.6 0.00032 7E-09 66.2 8.4 51 95-146 84-134 (637)
170 PF13604 AAA_30: AAA domain; P 97.6 0.00029 6.4E-09 57.0 7.2 98 123-229 19-134 (196)
171 PRK12608 transcription termina 97.5 0.00028 6.1E-09 62.3 7.4 87 104-196 120-230 (380)
172 PRK15429 formate hydrogenlyase 97.5 0.00035 7.6E-09 67.1 8.7 125 95-226 376-521 (686)
173 PRK06696 uridine kinase; Valid 97.5 0.00023 5.1E-09 58.7 6.0 45 99-146 2-46 (223)
174 PRK04132 replication factor C 97.5 0.00071 1.5E-08 65.7 10.1 114 130-245 574-691 (846)
175 PRK10820 DNA-binding transcrip 97.5 0.00079 1.7E-08 62.6 10.1 125 95-226 204-349 (520)
176 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00072 1.6E-08 55.9 8.8 51 120-170 17-71 (235)
177 PRK06964 DNA polymerase III su 97.5 0.0014 3E-08 57.6 10.9 73 172-245 119-193 (342)
178 PF07693 KAP_NTPase: KAP famil 97.5 0.0018 3.9E-08 56.2 11.6 43 102-147 3-45 (325)
179 CHL00176 ftsH cell division pr 97.5 0.0002 4.3E-09 67.8 6.0 93 95-197 183-286 (638)
180 TIGR00763 lon ATP-dependent pr 97.5 0.00012 2.6E-09 71.1 4.6 51 95-145 320-370 (775)
181 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00034 7.4E-09 64.6 6.9 96 95-197 190-293 (802)
182 PRK08699 DNA polymerase III su 97.5 0.00074 1.6E-08 59.0 8.8 122 122-245 21-174 (325)
183 COG0714 MoxR-like ATPases [Gen 97.4 0.00067 1.5E-08 59.3 8.4 104 95-211 24-137 (329)
184 PRK11388 DNA-binding transcrip 97.4 0.00059 1.3E-08 65.0 8.6 124 95-225 325-466 (638)
185 PRK15455 PrkA family serine pr 97.4 8.4E-05 1.8E-09 68.7 2.6 50 96-145 77-126 (644)
186 KOG0735 AAA+-type ATPase [Post 97.4 0.00042 9.1E-09 65.0 7.0 74 120-196 429-504 (952)
187 PTZ00361 26 proteosome regulat 97.4 9.6E-05 2.1E-09 66.9 2.8 95 96-197 184-287 (438)
188 cd03247 ABCC_cytochrome_bd The 97.4 0.00044 9.6E-09 54.9 6.3 116 123-240 29-169 (178)
189 TIGR02902 spore_lonB ATP-depen 97.4 0.00059 1.3E-08 63.5 7.4 44 96-145 66-109 (531)
190 TIGR01241 FtsH_fam ATP-depende 97.3 0.0003 6.4E-09 65.0 5.4 51 95-145 55-111 (495)
191 KOG0734 AAA+-type ATPase conta 97.3 0.00067 1.5E-08 61.8 6.9 92 95-197 304-407 (752)
192 COG0396 sufC Cysteine desulfur 97.3 0.0038 8.3E-08 51.3 10.6 51 186-238 162-216 (251)
193 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0035 7.6E-08 48.0 10.0 98 123-231 27-132 (144)
194 PF07724 AAA_2: AAA domain (Cd 97.3 8.8E-05 1.9E-09 58.8 1.1 87 122-211 3-104 (171)
195 cd03238 ABC_UvrA The excision 97.3 0.0017 3.7E-08 51.6 8.2 107 122-240 21-161 (176)
196 PRK06090 DNA polymerase III su 97.3 0.0048 1E-07 53.7 11.5 135 104-245 12-169 (319)
197 KOG1514 Origin recognition com 97.2 0.0023 5E-08 60.1 9.8 127 95-223 396-546 (767)
198 PRK06871 DNA polymerase III su 97.2 0.0026 5.6E-08 55.5 9.7 135 104-245 11-168 (325)
199 TIGR00382 clpX endopeptidase C 97.2 0.0023 4.9E-08 57.6 9.5 50 95-144 77-138 (413)
200 cd01131 PilT Pilus retraction 97.2 0.0006 1.3E-08 55.2 5.3 22 123-144 2-23 (198)
201 PRK08769 DNA polymerase III su 97.2 0.0034 7.4E-08 54.6 10.3 137 102-245 11-174 (319)
202 PRK07993 DNA polymerase III su 97.2 0.0044 9.5E-08 54.3 11.0 137 102-245 9-169 (334)
203 PRK13695 putative NTPase; Prov 97.2 0.00014 3.1E-09 57.5 1.5 22 124-145 2-23 (174)
204 TIGR01243 CDC48 AAA family ATP 97.2 0.00049 1.1E-08 66.6 5.3 93 95-197 178-282 (733)
205 PRK07667 uridine kinase; Provi 97.2 0.00079 1.7E-08 54.3 5.7 38 104-145 3-40 (193)
206 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0013 2.8E-08 60.5 7.5 93 95-197 228-329 (489)
207 PRK05342 clpX ATP-dependent pr 97.2 0.0006 1.3E-08 61.4 5.2 101 95-198 71-185 (412)
208 TIGR02030 BchI-ChlI magnesium 97.2 0.0007 1.5E-08 59.3 5.5 44 95-144 4-47 (337)
209 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0039 8.4E-08 48.9 9.2 114 123-240 28-160 (166)
210 TIGR01243 CDC48 AAA family ATP 97.2 0.0016 3.4E-08 63.1 8.4 93 95-197 453-557 (733)
211 cd03214 ABC_Iron-Siderophores_ 97.2 0.002 4.2E-08 51.3 7.6 105 123-231 26-163 (180)
212 PRK15115 response regulator Gl 97.2 0.0037 7.9E-08 56.8 10.3 124 96-226 135-279 (444)
213 TIGR02237 recomb_radB DNA repa 97.2 0.0012 2.7E-08 53.6 6.6 49 120-171 10-58 (209)
214 cd03228 ABCC_MRP_Like The MRP 97.2 0.0019 4.2E-08 50.9 7.4 110 123-240 29-167 (171)
215 COG0542 clpA ATP-binding subun 97.2 0.001 2.2E-08 63.8 6.7 119 95-225 170-309 (786)
216 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0016 3.4E-08 53.5 7.0 107 122-232 29-160 (213)
217 PRK04296 thymidine kinase; Pro 97.1 0.00056 1.2E-08 55.1 4.3 96 123-225 3-115 (190)
218 TIGR01650 PD_CobS cobaltochela 97.1 0.0017 3.8E-08 56.4 7.5 101 97-210 47-158 (327)
219 COG2884 FtsE Predicted ATPase 97.1 0.0016 3.5E-08 52.0 6.5 27 121-147 27-53 (223)
220 PRK13407 bchI magnesium chelat 97.1 0.001 2.2E-08 58.2 6.1 44 95-144 8-51 (334)
221 PF13238 AAA_18: AAA domain; P 97.1 0.00036 7.8E-09 51.7 2.7 21 125-145 1-21 (129)
222 PF08423 Rad51: Rad51; InterP 97.1 0.0017 3.7E-08 54.8 7.0 58 120-178 36-97 (256)
223 PF10443 RNA12: RNA12 protein; 97.1 0.0068 1.5E-07 54.2 10.8 40 100-145 1-41 (431)
224 KOG0924 mRNA splicing factor A 97.1 0.0051 1.1E-07 57.7 10.1 113 122-241 371-528 (1042)
225 COG3903 Predicted ATPase [Gene 97.1 0.00013 2.9E-09 64.3 -0.1 118 120-244 12-142 (414)
226 PRK10923 glnG nitrogen regulat 97.0 0.0045 9.7E-08 56.7 9.8 124 95-225 138-282 (469)
227 PF00448 SRP54: SRP54-type pro 97.0 0.0034 7.3E-08 50.8 7.9 36 123-160 2-37 (196)
228 PRK07132 DNA polymerase III su 97.0 0.0062 1.3E-07 52.6 9.9 122 122-245 18-151 (299)
229 COG4608 AppF ABC-type oligopep 97.0 0.003 6.4E-08 53.1 7.7 111 122-234 39-178 (268)
230 COG0467 RAD55 RecA-superfamily 97.0 0.0017 3.6E-08 54.9 6.4 71 120-195 21-92 (260)
231 COG1223 Predicted ATPase (AAA+ 97.0 0.00076 1.6E-08 56.4 4.0 93 95-197 121-221 (368)
232 KOG1051 Chaperone HSP104 and r 97.0 0.0038 8.2E-08 60.7 9.2 109 96-213 563-687 (898)
233 KOG0739 AAA+-type ATPase [Post 97.0 0.0027 5.9E-08 54.1 7.2 90 96-197 134-236 (439)
234 PF00485 PRK: Phosphoribulokin 97.0 0.00052 1.1E-08 55.3 2.9 22 124-145 1-22 (194)
235 TIGR02012 tigrfam_recA protein 97.0 0.0011 2.4E-08 57.6 5.1 44 120-165 53-96 (321)
236 cd01393 recA_like RecA is a b 97.0 0.0065 1.4E-07 49.9 9.5 50 120-171 17-72 (226)
237 PF13671 AAA_33: AAA domain; P 97.0 0.00061 1.3E-08 51.7 3.1 21 124-144 1-21 (143)
238 PF03308 ArgK: ArgK protein; 97.0 0.0014 3E-08 54.8 5.4 59 103-165 14-72 (266)
239 TIGR02238 recomb_DMC1 meiotic 97.0 0.004 8.7E-08 54.1 8.4 58 120-178 94-155 (313)
240 PRK05541 adenylylsulfate kinas 97.0 0.00076 1.6E-08 53.4 3.7 37 121-159 6-42 (176)
241 PRK05480 uridine/cytidine kina 97.0 0.00064 1.4E-08 55.4 3.3 27 120-146 4-30 (209)
242 PRK08233 hypothetical protein; 97.0 0.00064 1.4E-08 53.8 3.2 25 122-146 3-27 (182)
243 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0038 8.2E-08 50.9 7.7 108 122-233 29-158 (204)
244 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0092 2E-07 47.5 9.6 101 123-231 26-137 (177)
245 TIGR00235 udk uridine kinase. 97.0 0.00072 1.6E-08 55.1 3.3 26 120-145 4-29 (207)
246 cd03246 ABCC_Protease_Secretio 96.9 0.002 4.3E-08 50.9 5.7 23 123-145 29-51 (173)
247 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0066 1.4E-07 47.4 8.5 43 184-226 93-138 (159)
248 PLN03187 meiotic recombination 96.9 0.004 8.7E-08 54.7 8.1 59 120-179 124-186 (344)
249 PHA02774 E1; Provisional 96.9 0.0042 9E-08 57.7 8.3 69 103-195 420-488 (613)
250 KOG0744 AAA+-type ATPase [Post 96.9 0.0018 3.9E-08 55.8 5.5 28 122-149 177-204 (423)
251 PTZ00301 uridine kinase; Provi 96.9 0.001 2.2E-08 54.4 4.0 23 122-144 3-25 (210)
252 PLN03186 DNA repair protein RA 96.9 0.0043 9.3E-08 54.5 8.0 58 120-178 121-182 (342)
253 TIGR02239 recomb_RAD51 DNA rep 96.9 0.005 1.1E-07 53.6 8.4 50 120-169 94-147 (316)
254 TIGR02858 spore_III_AA stage I 96.9 0.012 2.6E-07 50.1 10.4 115 103-231 97-234 (270)
255 KOG0730 AAA+-type ATPase [Post 96.9 0.0015 3.3E-08 60.8 5.2 90 96-197 435-538 (693)
256 cd03283 ABC_MutS-like MutS-lik 96.9 0.008 1.7E-07 48.7 8.9 103 123-232 26-154 (199)
257 KOG2228 Origin recognition com 96.9 0.0048 1E-07 53.4 7.7 129 94-226 23-182 (408)
258 cd00983 recA RecA is a bacter 96.9 0.0015 3.3E-08 56.8 4.8 45 120-166 53-97 (325)
259 TIGR00390 hslU ATP-dependent p 96.9 0.0025 5.3E-08 57.2 6.2 51 95-145 12-70 (441)
260 PRK09354 recA recombinase A; P 96.9 0.002 4.3E-08 56.6 5.4 45 120-166 58-102 (349)
261 PRK15177 Vi polysaccharide exp 96.8 0.0074 1.6E-07 49.4 8.5 23 123-145 14-36 (213)
262 cd03217 ABC_FeS_Assembly ABC-t 96.8 0.0049 1.1E-07 49.9 7.3 23 123-145 27-49 (200)
263 PF07726 AAA_3: ATPase family 96.8 0.00067 1.5E-08 50.8 2.0 93 125-226 2-112 (131)
264 COG4618 ArpD ABC-type protease 96.8 0.003 6.5E-08 57.4 6.4 22 123-144 363-384 (580)
265 TIGR02329 propionate_PrpR prop 96.8 0.0042 9E-08 57.8 7.6 122 95-225 212-357 (526)
266 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0023 5.1E-08 59.2 5.7 64 122-197 545-615 (802)
267 PF14516 AAA_35: AAA-like doma 96.8 0.0096 2.1E-07 52.2 9.5 97 93-198 9-139 (331)
268 cd03263 ABC_subfamily_A The AB 96.8 0.0042 9.1E-08 50.9 6.8 23 123-145 29-51 (220)
269 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0013 2.8E-08 57.5 3.7 51 94-144 60-110 (358)
270 PRK05917 DNA polymerase III su 96.8 0.03 6.6E-07 48.0 12.0 133 105-244 7-155 (290)
271 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0048 1E-07 51.7 7.0 22 123-144 31-52 (254)
272 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.3E-08 52.8 3.0 25 121-145 2-26 (188)
273 COG1618 Predicted nucleotide k 96.8 0.00089 1.9E-08 51.9 2.4 24 122-145 5-28 (179)
274 PRK15424 propionate catabolism 96.8 0.0019 4.1E-08 60.1 5.0 122 95-225 219-372 (538)
275 cd02019 NK Nucleoside/nucleoti 96.8 0.00092 2E-08 44.5 2.2 22 124-145 1-22 (69)
276 PRK14974 cell division protein 96.8 0.01 2.2E-07 52.0 9.2 25 121-145 139-163 (336)
277 PRK06762 hypothetical protein; 96.8 0.0011 2.4E-08 51.9 2.9 23 123-145 3-25 (166)
278 PRK09361 radB DNA repair and r 96.8 0.0045 9.8E-08 50.9 6.7 46 120-168 21-66 (225)
279 cd01135 V_A-ATPase_B V/A-type 96.8 0.0057 1.2E-07 51.9 7.3 74 123-196 70-176 (276)
280 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0034 7.4E-08 49.5 5.7 107 123-231 27-160 (173)
281 PTZ00035 Rad51 protein; Provis 96.7 0.01 2.2E-07 52.2 9.0 50 120-169 116-169 (337)
282 TIGR01818 ntrC nitrogen regula 96.7 0.016 3.5E-07 52.9 10.7 123 96-226 135-279 (463)
283 COG4133 CcmA ABC-type transpor 96.7 0.013 2.9E-07 46.7 8.6 34 123-158 29-62 (209)
284 COG1703 ArgK Putative periplas 96.7 0.0024 5.1E-08 54.4 4.6 63 105-171 38-100 (323)
285 TIGR02768 TraA_Ti Ti-type conj 96.7 0.011 2.4E-07 57.3 9.8 101 123-228 369-479 (744)
286 cd03216 ABC_Carb_Monos_I This 96.7 0.0043 9.4E-08 48.5 5.9 99 123-230 27-146 (163)
287 cd01394 radB RadB. The archaea 96.7 0.006 1.3E-07 49.9 7.0 43 120-164 17-59 (218)
288 PRK11889 flhF flagellar biosyn 96.7 0.013 2.7E-07 52.4 9.3 25 121-145 240-264 (436)
289 PRK06547 hypothetical protein; 96.7 0.0015 3.2E-08 51.8 3.2 26 120-145 13-38 (172)
290 PRK03839 putative kinase; Prov 96.7 0.0012 2.5E-08 52.5 2.6 23 124-146 2-24 (180)
291 COG0464 SpoVK ATPases of the A 96.7 0.0023 4.9E-08 59.2 4.8 71 120-197 274-346 (494)
292 PRK05201 hslU ATP-dependent pr 96.7 0.0041 8.9E-08 55.8 6.2 51 95-145 15-73 (443)
293 cd03237 ABC_RNaseL_inhibitor_d 96.7 0.0091 2E-07 50.0 8.0 24 122-145 25-48 (246)
294 PRK09270 nucleoside triphospha 96.7 0.0014 3E-08 54.3 3.0 26 120-145 31-56 (229)
295 PF00910 RNA_helicase: RNA hel 96.6 0.00097 2.1E-08 48.4 1.7 21 125-145 1-21 (107)
296 KOG0729 26S proteasome regulat 96.6 0.0041 8.8E-08 52.3 5.5 95 96-197 178-281 (435)
297 TIGR01425 SRP54_euk signal rec 96.6 0.039 8.4E-07 49.9 12.2 24 121-144 99-122 (429)
298 TIGR03522 GldA_ABC_ATP gliding 96.6 0.0064 1.4E-07 52.5 7.0 23 123-145 29-51 (301)
299 PF00006 ATP-synt_ab: ATP synt 96.6 0.0051 1.1E-07 50.5 5.9 69 123-195 16-114 (215)
300 cd02023 UMPK Uridine monophosp 96.6 0.0012 2.6E-08 53.3 2.2 22 124-145 1-22 (198)
301 TIGR02236 recomb_radA DNA repa 96.6 0.008 1.7E-07 52.1 7.5 52 120-171 93-148 (310)
302 cd03287 ABC_MSH3_euk MutS3 hom 96.6 0.0075 1.6E-07 49.8 6.9 106 122-232 31-160 (222)
303 PRK06002 fliI flagellum-specif 96.6 0.0056 1.2E-07 55.5 6.6 71 122-195 165-263 (450)
304 PRK05703 flhF flagellar biosyn 96.6 0.022 4.7E-07 51.7 10.4 40 122-161 221-260 (424)
305 smart00350 MCM minichromosome 96.6 0.0041 8.8E-08 57.7 5.8 50 95-144 203-258 (509)
306 COG1124 DppF ABC-type dipeptid 96.6 0.0027 5.8E-08 52.5 4.0 22 123-144 34-55 (252)
307 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0027 5.8E-08 48.1 3.8 43 102-148 6-48 (133)
308 TIGR02915 PEP_resp_reg putativ 96.6 0.012 2.7E-07 53.4 8.8 123 96-226 140-284 (445)
309 cd02025 PanK Pantothenate kina 96.6 0.003 6.4E-08 52.1 4.3 22 124-145 1-22 (220)
310 cd04159 Arl10_like Arl10-like 96.6 0.0093 2E-07 45.2 6.8 21 125-145 2-22 (159)
311 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0014 3E-08 52.1 2.2 22 124-145 1-22 (183)
312 PRK04301 radA DNA repair and r 96.5 0.0083 1.8E-07 52.2 7.2 52 120-171 100-155 (317)
313 COG0572 Udk Uridine kinase [Nu 96.5 0.0028 6.1E-08 51.8 3.9 26 120-145 6-31 (218)
314 PF00625 Guanylate_kin: Guanyl 96.5 0.0024 5.2E-08 50.9 3.5 36 122-159 2-37 (183)
315 PRK12724 flagellar biosynthesi 96.5 0.011 2.3E-07 53.2 7.9 24 122-145 223-246 (432)
316 PTZ00185 ATPase alpha subunit; 96.5 0.0098 2.1E-07 54.6 7.6 74 123-196 190-299 (574)
317 TIGR02322 phosphon_PhnN phosph 96.5 0.0019 4E-08 51.2 2.7 23 123-145 2-24 (179)
318 PF13086 AAA_11: AAA domain; P 96.5 0.0045 9.8E-08 50.5 5.1 52 124-175 19-75 (236)
319 cd02028 UMPK_like Uridine mono 96.5 0.002 4.3E-08 51.4 2.8 22 124-145 1-22 (179)
320 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.013 2.8E-07 48.3 7.8 71 120-195 18-89 (229)
321 PF03193 DUF258: Protein of un 96.5 0.004 8.6E-08 48.7 4.4 36 102-146 24-59 (161)
322 TIGR03263 guanyl_kin guanylate 96.5 0.002 4.3E-08 51.0 2.7 23 123-145 2-24 (180)
323 KOG0651 26S proteasome regulat 96.5 0.0041 8.9E-08 53.3 4.6 103 120-229 164-284 (388)
324 PRK14722 flhF flagellar biosyn 96.5 0.0086 1.9E-07 53.2 6.9 76 122-198 137-227 (374)
325 PF01583 APS_kinase: Adenylyls 96.5 0.0034 7.3E-08 48.8 3.9 35 123-159 3-37 (156)
326 PRK00131 aroK shikimate kinase 96.5 0.0021 4.5E-08 50.4 2.7 24 122-145 4-27 (175)
327 PRK04040 adenylate kinase; Pro 96.5 0.0023 5E-08 51.4 3.0 23 123-145 3-25 (188)
328 PRK08972 fliI flagellum-specif 96.5 0.0089 1.9E-07 54.0 7.0 69 123-195 163-261 (444)
329 PRK13657 cyclic beta-1,2-gluca 96.5 0.0073 1.6E-07 57.0 6.8 24 122-145 361-384 (588)
330 COG0488 Uup ATPase components 96.5 0.013 2.7E-07 54.6 8.1 116 123-241 349-510 (530)
331 PRK14738 gmk guanylate kinase; 96.5 0.0027 5.9E-08 51.7 3.4 25 120-144 11-35 (206)
332 cd01132 F1_ATPase_alpha F1 ATP 96.5 0.0061 1.3E-07 51.7 5.5 70 123-196 70-171 (274)
333 PRK12597 F0F1 ATP synthase sub 96.5 0.0071 1.5E-07 55.1 6.3 72 123-195 144-246 (461)
334 PRK10751 molybdopterin-guanine 96.4 0.003 6.6E-08 50.0 3.4 27 120-146 4-30 (173)
335 cd02021 GntK Gluconate kinase 96.4 0.0019 4.2E-08 49.5 2.3 22 124-145 1-22 (150)
336 cd00071 GMPK Guanosine monopho 96.4 0.0022 4.9E-08 48.7 2.6 22 124-145 1-22 (137)
337 PRK13765 ATP-dependent proteas 96.4 0.0038 8.1E-08 59.2 4.6 76 95-180 31-106 (637)
338 TIGR00554 panK_bact pantothena 96.4 0.0045 9.7E-08 53.1 4.7 25 120-144 60-84 (290)
339 PRK08149 ATP synthase SpaL; Va 96.4 0.01 2.3E-07 53.5 7.2 24 122-145 151-174 (428)
340 cd00227 CPT Chloramphenicol (C 96.4 0.0022 4.7E-08 50.8 2.6 23 123-145 3-25 (175)
341 TIGR03499 FlhF flagellar biosy 96.4 0.0091 2E-07 51.1 6.6 41 121-161 193-233 (282)
342 PF01078 Mg_chelatase: Magnesi 96.4 0.0034 7.4E-08 50.9 3.7 110 95-213 3-133 (206)
343 cd01121 Sms Sms (bacterial rad 96.4 0.017 3.7E-07 51.4 8.4 41 120-162 80-120 (372)
344 PRK00625 shikimate kinase; Pro 96.4 0.0022 4.9E-08 50.8 2.5 22 124-145 2-23 (173)
345 PF08433 KTI12: Chromatin asso 96.4 0.0036 7.9E-08 53.2 3.9 23 123-145 2-24 (270)
346 cd01124 KaiC KaiC is a circadi 96.4 0.0034 7.3E-08 49.8 3.4 36 125-162 2-37 (187)
347 PF08477 Miro: Miro-like prote 96.4 0.0027 5.8E-08 46.4 2.7 22 125-146 2-23 (119)
348 TIGR00764 lon_rel lon-related 96.4 0.0067 1.5E-07 57.4 5.9 75 95-179 18-92 (608)
349 PRK05439 pantothenate kinase; 96.4 0.0046 1E-07 53.5 4.5 25 120-144 84-108 (311)
350 COG0563 Adk Adenylate kinase a 96.4 0.0023 5E-08 51.0 2.4 22 124-145 2-23 (178)
351 PRK06217 hypothetical protein; 96.4 0.0023 5.1E-08 51.0 2.5 35 124-159 3-39 (183)
352 PRK00771 signal recognition pa 96.4 0.024 5.1E-07 51.5 9.1 27 120-146 93-119 (437)
353 PRK10867 signal recognition pa 96.4 0.062 1.3E-06 48.8 11.7 25 120-144 98-122 (433)
354 TIGR00959 ffh signal recogniti 96.4 0.056 1.2E-06 49.0 11.4 24 121-144 98-121 (428)
355 PRK00889 adenylylsulfate kinas 96.3 0.0034 7.3E-08 49.6 3.2 25 122-146 4-28 (175)
356 cd02024 NRK1 Nicotinamide ribo 96.3 0.0022 4.7E-08 51.5 2.1 22 124-145 1-22 (187)
357 PRK12727 flagellar biosynthesi 96.3 0.025 5.5E-07 52.3 9.2 25 121-145 349-373 (559)
358 PRK00300 gmk guanylate kinase; 96.3 0.0028 6.1E-08 51.3 2.8 24 122-145 5-28 (205)
359 cd02020 CMPK Cytidine monophos 96.3 0.0023 5E-08 48.6 2.2 22 124-145 1-22 (147)
360 COG1643 HrpA HrpA-like helicas 96.3 0.028 6E-07 54.9 9.9 129 102-241 53-223 (845)
361 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.027 5.9E-07 43.5 8.2 108 123-240 26-153 (157)
362 PRK13947 shikimate kinase; Pro 96.3 0.0026 5.7E-08 49.9 2.5 22 124-145 3-24 (171)
363 TIGR03305 alt_F1F0_F1_bet alte 96.3 0.011 2.3E-07 53.7 6.6 72 123-195 139-241 (449)
364 TIGR02868 CydC thiol reductant 96.3 0.015 3.1E-07 54.2 7.8 25 121-145 360-384 (529)
365 PRK08927 fliI flagellum-specif 96.3 0.012 2.6E-07 53.3 6.9 70 122-195 158-257 (442)
366 TIGR01188 drrA daunorubicin re 96.3 0.014 3.1E-07 50.4 7.1 23 123-145 20-42 (302)
367 cd03243 ABC_MutS_homologs The 96.3 0.0083 1.8E-07 48.6 5.3 21 123-143 30-50 (202)
368 PRK11361 acetoacetate metaboli 96.3 0.031 6.8E-07 50.9 9.6 123 96-225 144-287 (457)
369 PRK10078 ribose 1,5-bisphospho 96.3 0.0032 7E-08 50.3 2.8 23 123-145 3-25 (186)
370 TIGR01420 pilT_fam pilus retra 96.3 0.01 2.2E-07 52.3 6.1 22 123-144 123-144 (343)
371 cd03280 ABC_MutS2 MutS2 homolo 96.3 0.02 4.4E-07 46.2 7.5 21 123-143 29-49 (200)
372 TIGR01967 DEAH_box_HrpA ATP-de 96.3 0.038 8.3E-07 56.2 10.8 128 102-240 70-238 (1283)
373 COG1102 Cmk Cytidylate kinase 96.3 0.0027 5.9E-08 49.3 2.2 24 124-147 2-25 (179)
374 PRK05922 type III secretion sy 96.3 0.016 3.4E-07 52.5 7.4 23 123-145 158-180 (434)
375 KOG1970 Checkpoint RAD17-RFC c 96.3 0.027 5.7E-07 51.9 8.7 44 101-145 88-133 (634)
376 PRK04328 hypothetical protein; 96.2 0.013 2.7E-07 49.3 6.4 70 120-194 21-91 (249)
377 PF03205 MobB: Molybdopterin g 96.2 0.0039 8.4E-08 47.7 2.9 39 123-162 1-39 (140)
378 PRK12723 flagellar biosynthesi 96.2 0.021 4.6E-07 51.0 8.0 92 121-212 173-282 (388)
379 PF03969 AFG1_ATPase: AFG1-lik 96.2 0.015 3.3E-07 51.5 7.0 29 120-148 60-88 (362)
380 PRK06936 type III secretion sy 96.2 0.014 3.1E-07 52.7 7.0 70 122-195 162-261 (439)
381 PF03266 NTPase_1: NTPase; In 96.2 0.0032 6.8E-08 49.7 2.5 22 125-146 2-23 (168)
382 COG1936 Predicted nucleotide k 96.2 0.0031 6.6E-08 49.5 2.3 20 124-143 2-21 (180)
383 PRK14530 adenylate kinase; Pro 96.2 0.0032 6.8E-08 51.6 2.6 23 124-146 5-27 (215)
384 TIGR01313 therm_gnt_kin carboh 96.2 0.0026 5.7E-08 49.5 2.0 21 125-145 1-21 (163)
385 TIGR03498 FliI_clade3 flagella 96.2 0.011 2.4E-07 53.3 6.1 23 123-145 141-163 (418)
386 CHL00081 chlI Mg-protoporyphyr 96.2 0.0043 9.4E-08 54.6 3.4 46 93-144 15-60 (350)
387 KOG0743 AAA+-type ATPase [Post 96.2 0.012 2.7E-07 52.7 6.2 66 119-197 232-297 (457)
388 cd01134 V_A-ATPase_A V/A-type 96.2 0.023 5.1E-07 49.8 7.8 47 123-173 158-205 (369)
389 PTZ00494 tuzin-like protein; P 96.2 0.036 7.9E-07 50.2 9.1 123 92-226 368-511 (664)
390 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.019 4.1E-07 47.8 7.1 49 120-172 19-67 (237)
391 cd01136 ATPase_flagellum-secre 96.2 0.019 4.2E-07 50.0 7.3 23 123-145 70-92 (326)
392 TIGR02442 Cob-chelat-sub cobal 96.2 0.018 4E-07 54.8 7.8 44 95-144 4-47 (633)
393 KOG0736 Peroxisome assembly fa 96.2 0.015 3.3E-07 55.3 7.0 91 95-197 672-775 (953)
394 smart00534 MUTSac ATPase domai 96.2 0.022 4.8E-07 45.5 7.2 103 124-232 1-128 (185)
395 PRK09099 type III secretion sy 96.2 0.014 2.9E-07 53.0 6.5 71 122-195 163-262 (441)
396 PRK09280 F0F1 ATP synthase sub 96.2 0.01 2.2E-07 54.0 5.6 72 123-195 145-247 (463)
397 PF13245 AAA_19: Part of AAA d 96.2 0.0076 1.7E-07 41.0 3.7 22 123-144 11-33 (76)
398 PF13521 AAA_28: AAA domain; P 96.2 0.0038 8.3E-08 48.7 2.6 21 125-145 2-22 (163)
399 PRK07594 type III secretion sy 96.2 0.014 3.1E-07 52.7 6.6 70 122-195 155-254 (433)
400 PRK13949 shikimate kinase; Pro 96.1 0.0038 8.2E-08 49.3 2.5 23 124-146 3-25 (169)
401 PRK14737 gmk guanylate kinase; 96.1 0.0051 1.1E-07 49.4 3.3 25 121-145 3-27 (186)
402 PRK14721 flhF flagellar biosyn 96.1 0.051 1.1E-06 49.1 10.0 24 121-144 190-213 (420)
403 TIGR01448 recD_rel helicase, p 96.1 0.019 4.2E-07 55.5 7.8 101 123-227 339-454 (720)
404 cd00464 SK Shikimate kinase (S 96.1 0.0038 8.3E-08 47.9 2.5 21 125-145 2-22 (154)
405 PRK03846 adenylylsulfate kinas 96.1 0.0051 1.1E-07 49.7 3.2 26 120-145 22-47 (198)
406 COG2274 SunT ABC-type bacterio 96.1 0.016 3.4E-07 55.8 7.0 23 122-144 499-521 (709)
407 TIGR02203 MsbA_lipidA lipid A 96.1 0.015 3.2E-07 54.7 6.8 24 122-145 358-381 (571)
408 TIGR02788 VirB11 P-type DNA tr 96.1 0.064 1.4E-06 46.5 10.2 24 122-145 144-167 (308)
409 cd01672 TMPK Thymidine monopho 96.1 0.013 2.7E-07 46.8 5.5 23 124-146 2-24 (200)
410 PRK09435 membrane ATPase/prote 96.1 0.011 2.3E-07 51.8 5.3 37 105-145 43-79 (332)
411 cd01122 GP4d_helicase GP4d_hel 96.1 0.041 8.8E-07 46.5 8.8 40 122-162 30-69 (271)
412 cd04162 Arl9_Arfrp2_like Arl9/ 96.1 0.041 8.8E-07 42.8 8.1 21 125-145 2-22 (164)
413 PRK14723 flhF flagellar biosyn 96.1 0.041 8.9E-07 53.1 9.4 24 122-145 185-208 (767)
414 COG0468 RecA RecA/RadA recombi 96.1 0.02 4.4E-07 48.7 6.7 50 120-171 58-107 (279)
415 PF03215 Rad17: Rad17 cell cyc 96.1 0.0061 1.3E-07 56.5 3.8 59 96-159 20-78 (519)
416 PRK14527 adenylate kinase; Pro 96.0 0.0051 1.1E-07 49.4 2.9 26 121-146 5-30 (191)
417 TIGR00064 ftsY signal recognit 96.0 0.0089 1.9E-07 50.9 4.5 39 120-160 70-108 (272)
418 PRK11176 lipid transporter ATP 96.0 0.018 3.9E-07 54.2 7.0 24 122-145 369-392 (582)
419 COG1117 PstB ABC-type phosphat 96.0 0.037 8E-07 45.2 7.7 25 120-144 31-55 (253)
420 KOG0738 AAA+-type ATPase [Post 96.0 0.0044 9.5E-08 54.6 2.5 70 121-197 244-315 (491)
421 COG1116 TauB ABC-type nitrate/ 96.0 0.0051 1.1E-07 51.1 2.8 22 123-144 30-51 (248)
422 PF00025 Arf: ADP-ribosylation 96.0 0.13 2.8E-06 40.6 10.9 25 121-145 13-37 (175)
423 COG1428 Deoxynucleoside kinase 96.0 0.0047 1E-07 50.0 2.5 26 122-147 4-29 (216)
424 PF06309 Torsin: Torsin; Inte 96.0 0.012 2.6E-07 44.0 4.5 48 95-145 25-76 (127)
425 COG3640 CooC CO dehydrogenase 96.0 0.01 2.2E-07 48.9 4.4 42 124-166 2-43 (255)
426 TIGR00368 Mg chelatase-related 96.0 0.017 3.8E-07 53.3 6.5 43 94-144 191-233 (499)
427 cd02027 APSK Adenosine 5'-phos 96.0 0.0043 9.4E-08 47.8 2.2 22 124-145 1-22 (149)
428 PRK11174 cysteine/glutathione 96.0 0.026 5.5E-07 53.3 7.8 24 122-145 376-399 (588)
429 TIGR01041 ATP_syn_B_arch ATP s 96.0 0.016 3.5E-07 52.8 6.2 73 123-195 142-247 (458)
430 cd00820 PEPCK_HprK Phosphoenol 96.0 0.0061 1.3E-07 44.3 2.8 21 123-143 16-36 (107)
431 CHL00059 atpA ATP synthase CF1 96.0 0.015 3.3E-07 53.0 6.0 70 123-196 142-243 (485)
432 PRK12339 2-phosphoglycerate ki 96.0 0.0062 1.3E-07 49.3 3.1 24 122-145 3-26 (197)
433 COG1131 CcmA ABC-type multidru 96.0 0.063 1.4E-06 46.2 9.5 23 123-145 32-54 (293)
434 PRK13975 thymidylate kinase; P 96.0 0.0055 1.2E-07 49.1 2.8 24 123-146 3-26 (196)
435 PRK15064 ABC transporter ATP-b 96.0 0.071 1.5E-06 49.7 10.6 23 123-145 28-50 (530)
436 TIGR00073 hypB hydrogenase acc 96.0 0.006 1.3E-07 49.7 3.0 26 120-145 20-45 (207)
437 PRK13537 nodulation ABC transp 96.0 0.023 5E-07 49.2 6.8 23 123-145 34-56 (306)
438 TIGR01192 chvA glucan exporter 96.0 0.026 5.7E-07 53.3 7.7 24 122-145 361-384 (585)
439 PF00005 ABC_tran: ABC transpo 96.0 0.0062 1.3E-07 45.8 2.9 24 123-146 12-35 (137)
440 TIGR03375 type_I_sec_LssB type 96.0 0.024 5.1E-07 54.7 7.5 24 122-145 491-514 (694)
441 PTZ00111 DNA replication licen 96.0 0.023 5E-07 55.6 7.3 50 95-144 450-514 (915)
442 PF03029 ATP_bind_1: Conserved 96.0 0.0065 1.4E-07 50.7 3.2 31 127-159 1-31 (238)
443 TIGR00041 DTMP_kinase thymidyl 95.9 0.018 3.8E-07 46.1 5.7 24 123-146 4-27 (195)
444 KOG2170 ATPase of the AAA+ sup 95.9 0.0086 1.9E-07 51.1 3.8 111 96-211 83-203 (344)
445 PLN02200 adenylate kinase fami 95.9 0.0066 1.4E-07 50.5 3.1 26 120-145 41-66 (234)
446 PRK13894 conjugal transfer ATP 95.9 0.056 1.2E-06 47.1 9.0 83 123-217 149-247 (319)
447 PRK06793 fliI flagellum-specif 95.9 0.051 1.1E-06 49.2 8.9 108 122-233 156-293 (432)
448 COG0194 Gmk Guanylate kinase [ 95.9 0.0077 1.7E-07 47.9 3.2 25 122-146 4-28 (191)
449 PRK13889 conjugal transfer rel 95.9 0.065 1.4E-06 53.4 10.3 100 124-228 364-473 (988)
450 TIGR03324 alt_F1F0_F1_al alter 95.9 0.02 4.3E-07 52.5 6.3 70 123-196 163-264 (497)
451 smart00487 DEXDc DEAD-like hel 95.9 0.03 6.4E-07 43.9 6.7 22 123-144 25-47 (201)
452 PRK10789 putative multidrug tr 95.9 0.026 5.6E-07 53.1 7.3 24 122-145 341-364 (569)
453 TIGR01193 bacteriocin_ABC ABC- 95.9 0.024 5.3E-07 54.7 7.3 24 122-145 500-523 (708)
454 TIGR00991 3a0901s02IAP34 GTP-b 95.9 0.088 1.9E-06 45.5 9.9 26 120-145 36-61 (313)
455 TIGR01039 atpD ATP synthase, F 95.9 0.019 4.1E-07 52.2 6.0 72 123-195 144-246 (461)
456 TIGR03496 FliI_clade1 flagella 95.9 0.024 5.2E-07 51.1 6.7 69 123-195 138-236 (411)
457 COG1100 GTPase SAR1 and relate 95.9 0.0061 1.3E-07 49.6 2.7 24 123-146 6-29 (219)
458 cd04139 RalA_RalB RalA/RalB su 95.9 0.0064 1.4E-07 46.7 2.7 23 124-146 2-24 (164)
459 PRK07721 fliI flagellum-specif 95.9 0.026 5.6E-07 51.3 6.9 25 121-145 157-181 (438)
460 cd03227 ABC_Class2 ABC-type Cl 95.9 0.059 1.3E-06 42.0 8.2 115 123-241 22-154 (162)
461 PRK14532 adenylate kinase; Pro 95.9 0.0058 1.3E-07 48.8 2.5 21 125-145 3-23 (188)
462 TIGR00958 3a01208 Conjugate Tr 95.9 0.033 7.1E-07 53.9 8.0 26 121-146 506-531 (711)
463 PRK13948 shikimate kinase; Pro 95.9 0.007 1.5E-07 48.4 2.9 26 120-145 8-33 (182)
464 PRK05688 fliI flagellum-specif 95.9 0.024 5.2E-07 51.5 6.6 69 123-195 169-267 (451)
465 TIGR01040 V-ATPase_V1_B V-type 95.8 0.024 5.1E-07 51.5 6.5 73 123-195 142-256 (466)
466 smart00072 GuKc Guanylate kina 95.8 0.0084 1.8E-07 47.9 3.3 23 123-145 3-25 (184)
467 cd01428 ADK Adenylate kinase ( 95.8 0.0059 1.3E-07 48.8 2.4 21 125-145 2-22 (194)
468 TIGR00750 lao LAO/AO transport 95.8 0.014 3E-07 50.4 4.9 26 120-145 32-57 (300)
469 PRK05973 replicative DNA helic 95.8 0.032 6.9E-07 46.5 6.8 40 120-161 62-101 (237)
470 PRK05057 aroK shikimate kinase 95.8 0.0065 1.4E-07 48.0 2.6 23 123-145 5-27 (172)
471 PRK11823 DNA repair protein Ra 95.8 0.031 6.8E-07 51.0 7.3 41 120-162 78-118 (446)
472 PRK06067 flagellar accessory p 95.8 0.032 7E-07 46.2 6.9 42 120-163 23-64 (234)
473 COG2401 ABC-type ATPase fused 95.8 0.0078 1.7E-07 53.7 3.2 50 96-145 372-432 (593)
474 PRK07196 fliI flagellum-specif 95.8 0.023 5.1E-07 51.4 6.4 24 122-145 155-178 (434)
475 cd01130 VirB11-like_ATPase Typ 95.8 0.011 2.5E-07 47.2 4.0 22 123-144 26-47 (186)
476 PRK06761 hypothetical protein; 95.8 0.014 3.1E-07 49.8 4.8 24 123-146 4-27 (282)
477 PF01926 MMR_HSR1: 50S ribosom 95.8 0.0081 1.7E-07 43.9 2.9 21 125-145 2-22 (116)
478 TIGR02546 III_secr_ATP type II 95.8 0.037 8E-07 50.1 7.6 24 122-145 145-168 (422)
479 COG0465 HflB ATP-dependent Zn 95.8 0.015 3.2E-07 54.4 5.2 94 92-197 147-253 (596)
480 cd04155 Arl3 Arl3 subfamily. 95.8 0.0077 1.7E-07 47.0 2.9 24 122-145 14-37 (173)
481 PF02374 ArsA_ATPase: Anion-tr 95.8 0.011 2.4E-07 51.2 4.1 22 123-144 2-23 (305)
482 COG1126 GlnQ ABC-type polar am 95.8 0.0072 1.6E-07 49.3 2.7 23 122-144 28-50 (240)
483 PRK08533 flagellar accessory p 95.8 0.024 5.2E-07 47.0 5.9 39 120-160 22-60 (230)
484 PRK05818 DNA polymerase III su 95.8 0.06 1.3E-06 45.4 8.2 120 123-243 8-147 (261)
485 KOG1532 GTPase XAB1, interacts 95.8 0.0087 1.9E-07 50.5 3.2 27 120-146 17-43 (366)
486 PRK09519 recA DNA recombinatio 95.8 0.03 6.5E-07 54.2 7.2 70 120-196 58-148 (790)
487 KOG0726 26S proteasome regulat 95.8 0.011 2.5E-07 50.3 3.9 94 96-196 186-288 (440)
488 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.064 1.4E-06 56.2 9.8 26 121-146 1629-1654(2281)
489 PLN02318 phosphoribulokinase/u 95.8 0.013 2.8E-07 54.9 4.5 26 120-145 63-88 (656)
490 cd03284 ABC_MutS1 MutS1 homolo 95.8 0.021 4.5E-07 46.9 5.4 21 123-143 31-51 (216)
491 TIGR01846 type_I_sec_HlyB type 95.8 0.032 7E-07 53.8 7.5 24 122-145 483-506 (694)
492 TIGR03497 FliI_clade2 flagella 95.7 0.025 5.5E-07 51.0 6.3 24 122-145 137-160 (413)
493 PRK08356 hypothetical protein; 95.7 0.0094 2E-07 48.0 3.2 21 123-143 6-26 (195)
494 PRK09281 F0F1 ATP synthase sub 95.7 0.02 4.3E-07 52.8 5.7 70 123-196 163-264 (502)
495 PHA02530 pseT polynucleotide k 95.7 0.0081 1.8E-07 51.6 3.0 23 123-145 3-25 (300)
496 TIGR03574 selen_PSTK L-seryl-t 95.7 0.0062 1.4E-07 51.0 2.2 21 125-145 2-22 (249)
497 PRK04182 cytidylate kinase; Pr 95.7 0.0079 1.7E-07 47.3 2.7 22 124-145 2-23 (180)
498 TIGR02857 CydD thiol reductant 95.7 0.028 6E-07 52.4 6.7 25 121-145 347-371 (529)
499 PRK09825 idnK D-gluconate kina 95.7 0.0081 1.8E-07 47.7 2.7 23 123-145 4-26 (176)
500 PRK10875 recD exonuclease V su 95.7 0.039 8.6E-07 52.3 7.7 50 123-172 168-218 (615)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-28 Score=235.75 Aligned_cols=194 Identities=27% Similarity=0.423 Sum_probs=161.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccCccccCCCCC---CCCCcccccccCCCCccccccchHHHHHHHhhCCCCCCCC
Q 045522 44 FIRHDIAVKIQEINEELDDIAIQKDKFKFVESASKGS---EKPGRVQSTSLIDEEEICGRVDEKNELLSKLLCESSEQQK 120 (246)
Q Consensus 44 ~~r~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~ 120 (246)
...+..+..+..+.+++-.+......++....-.... .+.......+..+... ||.+..++++.+.|..++
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~----- 178 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD----- 178 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC-----
Confidence 5677888888888888888888877777554321111 1111222333344444 999999999999998865
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccc-cccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-----------------
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDE-VKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES----------------- 182 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----------------- 182 (246)
..+++|+||||+||||||+.++|+.. ++++|+.++||.+|++++...+..+|+..++....
T Consensus 179 -~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 179 -VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred -CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 28999999999999999999999988 99999999999999999999999999998876332
Q ss_pred CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhHHhh-cCCCceEeCCCCCCC
Q 045522 183 RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSVTSM-MGSTDIISVKELTKE 246 (246)
Q Consensus 183 ~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~-~~~~~~~~l~~L~~e 246 (246)
+.++||+|||||||+. .+|+.+..++|....||+|++|||+++||.. |++...+++..|++|
T Consensus 258 L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 258 LEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred hccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence 8899999999999999 7899999999998889999999999999998 888999999999865
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=5.6e-26 Score=194.23 Aligned_cols=140 Identities=36% Similarity=0.539 Sum_probs=112.6
Q ss_pred ccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccC
Q 045522 100 RVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDG 179 (246)
Q Consensus 100 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 179 (246)
||.++++|.+.|.... .+.++|+|+|+||+||||||..++++...+.+|+.++|++++...+...++..|+..++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7889999999998754 678999999999999999999999977789999999999999999889999999999977
Q ss_pred CC-----C-------------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhHHhhcCC-CceEeC
Q 045522 180 HE-----S-------------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSVTSMMGS-TDIISV 240 (246)
Q Consensus 180 ~~-----~-------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~~~~-~~~~~l 240 (246)
.. . +.++++||||||+|+. ..|+.+...++....||+||||||+..++..++. ...|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 62 1 6788999999999998 6888888888877779999999999999887755 788999
Q ss_pred CCCCC
Q 045522 241 KELTK 245 (246)
Q Consensus 241 ~~L~~ 245 (246)
++|+.
T Consensus 155 ~~L~~ 159 (287)
T PF00931_consen 155 EPLSE 159 (287)
T ss_dssp SS--H
T ss_pred ccccc
Confidence 99874
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=4.4e-20 Score=183.97 Aligned_cols=147 Identities=21% Similarity=0.265 Sum_probs=112.6
Q ss_pred cCCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe---cCC----
Q 045522 91 LIDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV---SDT---- 163 (246)
Q Consensus 91 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~---- 163 (246)
..+.+++||++..++++..+|.... ...++|+||||||+||||||+.+|+ ++..+|+..+|+.. ...
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhc
Confidence 3445679999999999998885443 5689999999999999999999999 67788988888742 110
Q ss_pred -------CC-HHHHHHHHHHHccCC----C--------CCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec
Q 045522 164 -------FD-EFRVAKAMVEALDGH----E--------SRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT 223 (246)
Q Consensus 164 -------~~-~~~~~~~i~~~~~~~----~--------~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt 223 (246)
++ ...+...++..+... . .+.++++||||||||+. ..|+.+.......++||+|||||
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEe
Confidence 11 122333444333221 1 17789999999999987 67888877665557899999999
Q ss_pred CChhHHhhcCCCceEeCCCCCC
Q 045522 224 RKGSVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 224 R~~~va~~~~~~~~~~l~~L~~ 245 (246)
|+..++..++..+.|+++.|++
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~ 353 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSN 353 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCH
Confidence 9999998888889999999875
No 4
>PF05729 NACHT: NACHT domain
Probab=99.24 E-value=4e-11 Score=93.61 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=79.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccc----cCeEEEEEecCCCCHH---HHHHHHHHHccCCCC----------CCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRK----FDKILWVCVSDTFDEF---RVAKAMVEALDGHES----------RLG 185 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~----------~~~ 185 (246)
+++.|.|.+|+||||+++.++.+...... +...+|++........ .+...+......... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 47899999999999999998875543332 4567777765433221 344444444333221 467
Q ss_pred CeEEEEEeCCCCCCcc-------CHHH-HHHhhcC-CCCCcEEEEecCChhH---HhhcCCCceEeCCCCCC
Q 045522 186 KRFLLVLDDVWDGDYI-------KWKP-FYHCLKN-GLHESKILVTTRKGSV---TSMMGSTDIISVKELTK 245 (246)
Q Consensus 186 kr~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~IliTtR~~~v---a~~~~~~~~~~l~~L~~ 245 (246)
++++||||+++..... .+.. +...++. ..++++++||+|.... .........+++.+|++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 8999999999765321 1222 3334443 3578999999999766 33444466889998875
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=1.6e-10 Score=103.25 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 92 IDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 92 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
..++.++||++++++|...|...-. ......+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3446899999999999998844321 13335578999999999999999998543332234567788777778888888
Q ss_pred HHHHHccCC-CC------------------CCCCeEEEEEeCCCCC
Q 045522 172 AMVEALDGH-ES------------------RLGKRFLLVLDDVWDG 198 (246)
Q Consensus 172 ~i~~~~~~~-~~------------------~~~kr~LlVlDdv~~~ 198 (246)
.++.++... .+ -.++..+||||+++..
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 888888651 11 1355689999999874
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=8.5e-10 Score=97.57 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=73.9
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-ccc---CeEEEEEecCCCCHHHH
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK-RKF---DKILWVCVSDTFDEFRV 169 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~~ 169 (246)
++.++||++++++|...|..... ......+.|+|++|+|||++++.++++.... ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 35799999999999999864221 1334578999999999999999999843211 111 25678888777777788
Q ss_pred HHHHHHHcc---CCCC------------------CCCCeEEEEEeCCCCC
Q 045522 170 AKAMVEALD---GHES------------------RLGKRFLLVLDDVWDG 198 (246)
Q Consensus 170 ~~~i~~~~~---~~~~------------------~~~kr~LlVlDdv~~~ 198 (246)
+..++.++. ...+ -.++..+||||+++..
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 888888873 2111 1356789999999876
No 7
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=1.2e-09 Score=82.85 Aligned_cols=122 Identities=19% Similarity=0.137 Sum_probs=74.7
Q ss_pred ccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH---
Q 045522 98 CGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV--- 174 (246)
Q Consensus 98 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~--- 174 (246)
+|++..++.+...+... ....+.|+|++|+|||+|++.+++... ..-..++++..............+.
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 72 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFL 72 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhhh
Confidence 46788888888887543 246888999999999999999998442 2234567777655443322222111
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC------CCCcEEEEecCChh
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG------LHESKILVTTRKGS 227 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~IliTtR~~~ 227 (246)
...........+..++++||++.........+...+... ..+..+|+||....
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000001113456789999999864222333444444332 35778888887654
No 8
>PF13173 AAA_14: AAA domain
Probab=99.05 E-value=7e-10 Score=83.69 Aligned_cols=115 Identities=21% Similarity=0.241 Sum_probs=76.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIK 202 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~ 202 (246)
+++.|.|+.|+|||||++.++.+.. ....++++++.+.........++.+.+... ...+..+++||++... ..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~iDEiq~~--~~ 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLEL--IKPGKKYIFIDEIQYL--PD 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHh--hccCCcEEEEehhhhh--cc
Confidence 6899999999999999999987443 346778888766543321111111211111 2237788999999887 67
Q ss_pred HHHHHHhhcCCCCCcEEEEecCChhHHhh-----c-CCCceEeCCCCC
Q 045522 203 WKPFYHCLKNGLHESKILVTTRKGSVTSM-----M-GSTDIISVKELT 244 (246)
Q Consensus 203 ~~~l~~~l~~~~~gs~IliTtR~~~va~~-----~-~~~~~~~l~~L~ 244 (246)
|......+.+..+..+|++|+.+...... + |....++|.||+
T Consensus 76 ~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Pls 123 (128)
T PF13173_consen 76 WEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLS 123 (128)
T ss_pred HHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCC
Confidence 88877777666566899999987655532 1 225567888876
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.03 E-value=6.4e-10 Score=96.79 Aligned_cols=136 Identities=21% Similarity=0.356 Sum_probs=88.2
Q ss_pred cCCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHH
Q 045522 91 LIDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 91 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 170 (246)
.+...+++|-...+.++++ ...+....+|||+|+||||||+.+.. .....| ..++-..+-.+-+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdl 89 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDL 89 (436)
T ss_pred hcChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHH
Confidence 3444567777666666655 25577888999999999999999998 444454 3334333333444
Q ss_pred HHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE--ecCChhHH---hhcCCCceEeCCCCCC
Q 045522 171 KAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV--TTRKGSVT---SMMGSTDIISVKELTK 245 (246)
Q Consensus 171 ~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili--TtR~~~va---~~~~~~~~~~l~~L~~ 245 (246)
+.+++...... ..+++.+|++|.|+..+..+-+.|+..+. .|.-|+| ||-++... .......++.+++|+.
T Consensus 90 r~i~e~a~~~~-~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~ 165 (436)
T COG2256 90 REIIEEARKNR-LLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSS 165 (436)
T ss_pred HHHHHHHHHHH-hcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCH
Confidence 44444442221 34899999999999876666666655554 4565555 67765332 2234478999999986
Q ss_pred C
Q 045522 246 E 246 (246)
Q Consensus 246 e 246 (246)
|
T Consensus 166 ~ 166 (436)
T COG2256 166 E 166 (436)
T ss_pred H
Confidence 4
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.93 E-value=5.8e-10 Score=91.73 Aligned_cols=44 Identities=27% Similarity=0.234 Sum_probs=35.5
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 97 ICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 97 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
|+||++++++|.+.+..+ ....+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 789999999999988653 24789999999999999999998843
No 11
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.92 E-value=6.8e-09 Score=90.67 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=84.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccccc-CeEEEEEecCCC---------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF-DKILWVCVSDTF--------- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~--------- 164 (246)
.+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.+...- ..+ ...+.+++++..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhc
Confidence 46899999999998888542 3346889999999999999998774321 111 123444443211
Q ss_pred ----------------CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-h
Q 045522 165 ----------------DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-S 227 (246)
Q Consensus 165 ----------------~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~ 227 (246)
.....++.+++......+..+.+.+|||||++.........|...+......+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 01223333443333333334456689999997764344555666665555557788777543 2
Q ss_pred HHhhc-CCCceEeCCCCC
Q 045522 228 VTSMM-GSTDIISVKELT 244 (246)
Q Consensus 228 va~~~-~~~~~~~l~~L~ 244 (246)
+...+ .....+++.+++
T Consensus 168 ~~~~L~sr~~~v~~~~~~ 185 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPT 185 (337)
T ss_pred CchhhcCCceEEEecCCC
Confidence 22222 224456666654
No 12
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.90 E-value=2.7e-09 Score=91.94 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD 199 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~ 199 (246)
..++.+.+||++|+||||||+.+.... +.+- ..+|.++....-..-.+.|+++......+.++|.+|++|.|+..+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~ts--k~~S--yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTS--KKHS--YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhc--CCCc--eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 557889999999999999999999843 3332 567777766666666777888777766788999999999998765
Q ss_pred ccCHHHHHHhhcCCCCCcEEEE--ecCChhH---HhhcCCCceEeCCCCCC
Q 045522 200 YIKWKPFYHCLKNGLHESKILV--TTRKGSV---TSMMGSTDIISVKELTK 245 (246)
Q Consensus 200 ~~~~~~l~~~l~~~~~gs~Ili--TtR~~~v---a~~~~~~~~~~l~~L~~ 245 (246)
..+-+.+ ||.-..|+-++| ||-++.. +..+....++-|++|+.
T Consensus 236 ksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~ 283 (554)
T KOG2028|consen 236 KSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPV 283 (554)
T ss_pred hhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCH
Confidence 4444444 444445665444 6777543 22234467777777764
No 13
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=1.8e-08 Score=94.95 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=95.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-------------------ccccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-------------------KRKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 155 (246)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.... .+.|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 469999999999999885432 2346679999999999999877663321 1123345
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~ 233 (246)
++++.........+ +.+++.+... ...++..++|||+++......++.|+..|.....++++|++|.+. .+...+ .
T Consensus 91 iEIDAas~rgVDdI-ReLIe~a~~~-P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 91 VEMDAASNRGVDEM-AALLERAVYA-PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred EEecccccccHHHH-HHHHHHHHhc-cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh
Confidence 66665554444433 3344433211 244567799999999887667888888888766678877777664 333222 2
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....++++.|+.
T Consensus 169 RCq~f~Fk~Ls~ 180 (830)
T PRK07003 169 RCLQFNLKQMPA 180 (830)
T ss_pred heEEEecCCcCH
Confidence 357778887764
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.86 E-value=4.8e-09 Score=78.91 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=69.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccccccc---ccCeEEEEEecCCCCHHHHHHHHHHHccCCCC---------------
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKR---KFDKILWVCVSDTFDEFRVAKAMVEALDGHES--------------- 182 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------------- 182 (246)
+.+.+.|+|++|+|||++++.+.++..... .-..++|+.+....+...+...+++.++....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 347899999999999999999988432110 03466799998888999999999999876643
Q ss_pred -CCCCeEEEEEeCCCCC-CccCHHHHHHhhcCCCCCcEEEEecCC
Q 045522 183 -RLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 183 -~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTtR~ 225 (246)
...+..+||||+++.. +...++.|..... ..+.++|+....
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 2234479999999775 5444555544333 566788887665
No 15
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.85 E-value=3e-09 Score=84.63 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=33.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK 149 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 149 (246)
.|+||+++++++...|... .....+.+.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999522 23556999999999999999999988844333
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.84 E-value=5.9e-09 Score=86.51 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=69.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC-c
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD-Y 200 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~-~ 200 (246)
.+.+.|+|++|+|||+|++.+++.. ......+.|+++... ......+++.+ .+.-+|+|||+|... .
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~~~~~~~-------~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSPAVLENL-------EQQDLVCLDDLQAVIGN 106 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhHHHHhhc-------ccCCEEEEeChhhhcCC
Confidence 3678999999999999999999853 223345677776421 11112223222 133599999998742 2
Q ss_pred cCHHH-HHHhhcCC-CCCcEE-EEecCC---------hhHHhhcCCCceEeCCCCCCC
Q 045522 201 IKWKP-FYHCLKNG-LHESKI-LVTTRK---------GSVTSMMGSTDIISVKELTKE 246 (246)
Q Consensus 201 ~~~~~-l~~~l~~~-~~gs~I-liTtR~---------~~va~~~~~~~~~~l~~L~~e 246 (246)
..|.. +...+... ..|+.+ |+|+.. +.+.+.++....++++++++|
T Consensus 107 ~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 107 EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 44553 44444322 234555 455544 467777777788899988753
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.81 E-value=1.1e-07 Score=80.50 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=65.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-------------------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------------------- 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------------- 182 (246)
...+.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..+...++.+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458899999999999999999985432 111 22233 23345667788888877764321
Q ss_pred CCCCeEEEEEeCCCCCCccCHHHHHHhhcC---CCCCcEEEEecCC
Q 045522 183 RLGKRFLLVLDDVWDGDYIKWKPFYHCLKN---GLHESKILVTTRK 225 (246)
Q Consensus 183 ~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~IliTtR~ 225 (246)
..+++.++|+||++..+...++.+...... ......|++|...
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~ 165 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP 165 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH
Confidence 357889999999998765566666543321 1222345666543
No 18
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=3e-08 Score=92.25 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=94.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc------------------------cc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV------------------------KR 150 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------------~~ 150 (246)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...- .+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 469999999999999886543 2356788999999999999887653321 01
Q ss_pred ccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEE-EEecCChhHH
Q 045522 151 KFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKI-LVTTRKGSVT 229 (246)
Q Consensus 151 ~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I-liTtR~~~va 229 (246)
.|..+++++......+..+. ++++.+... ...++..++|||+++......++.|+..|.....++.+ ++||....+.
T Consensus 91 ~hpDviEIdAas~~gVDdIR-eLie~~~~~-P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMA-QLLDKAVYA-PTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCcceEecccccCCHHHHH-HHHHHHHhc-hhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 22234556555445554433 344433221 24567789999999988767788888888776556664 4555545554
Q ss_pred hhc-CCCceEeCCCCCC
Q 045522 230 SMM-GSTDIISVKELTK 245 (246)
Q Consensus 230 ~~~-~~~~~~~l~~L~~ 245 (246)
..+ .....+.++.++.
T Consensus 169 pTIrSRCq~f~f~~ls~ 185 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPP 185 (700)
T ss_pred hHHHHHHHhcccCCCCh
Confidence 333 2256777777654
No 19
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.78 E-value=1.8e-08 Score=90.70 Aligned_cols=134 Identities=19% Similarity=0.315 Sum_probs=76.7
Q ss_pred CccccccchHHH---HHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
.+++|++..+.. +..++.. .....+.++|++|+||||||+.+++. ....| +.++.......-+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 357887776554 6666533 33457888999999999999999883 33333 22222111122233
Q ss_pred HHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE--ecCChh--HH-hhcCCCceEeCCCCCC
Q 045522 172 AMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV--TTRKGS--VT-SMMGSTDIISVKELTK 245 (246)
Q Consensus 172 ~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili--TtR~~~--va-~~~~~~~~~~l~~L~~ 245 (246)
.+++.+... ...+++.+|+||+++.......+.|...+.. |+.++| ||.+.. +. ........+++.+|+.
T Consensus 79 ~ii~~~~~~-~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~ 153 (413)
T PRK13342 79 EVIEEARQR-RSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSE 153 (413)
T ss_pred HHHHHHHHh-hhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCH
Confidence 344433221 1245788999999988754555666666653 344444 444432 11 1122246777877764
No 20
>PLN03025 replication factor C subunit; Provisional
Probab=98.77 E-value=4.6e-08 Score=85.18 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=84.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccC-eEEEEEecCCCCHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFD-KILWVCVSDTFDEFRVAKAM 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 173 (246)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++... ...|. .++-++.++..+.. .++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 36889888888887776432 334578999999999999999887431 11222 23334444444433 33333
Q ss_pred HHHccCCC-C-CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-CCCceEeCCCCCC
Q 045522 174 VEALDGHE-S-RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 174 ~~~~~~~~-~-~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~~~~~~~l~~L~~ 245 (246)
+..+.... . ..++..+++||+++.........|...+......+++++++... .+...+ .....++++++++
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~ 160 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCH
Confidence 33322111 1 23567799999998875455566776676545567777766442 222111 1235677777654
No 21
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=9.4e-08 Score=84.66 Aligned_cols=144 Identities=12% Similarity=0.145 Sum_probs=92.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-------------------cccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK-------------------RKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 155 (246)
.+++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+.+...-. ..+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999888885432 23567899999999999999887743211 112223
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~ 233 (246)
.++..+...... .++.+++.+.. .+..++..++|+|+++......++.+...+......+++|++|.+ ..+...+ +
T Consensus 91 ~~~~~~~~~~v~-~ir~i~~~~~~-~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 91 IEIDAASRTKVE-EMREILDNIYY-SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred EEecccccCCHH-HHHHHHHHHhc-CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 344433223333 34455554432 124456779999999887655677888888776666777766644 3443333 2
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+++.
T Consensus 169 Rc~~~~~~~l~~ 180 (363)
T PRK14961 169 RCLQFKLKIISE 180 (363)
T ss_pred hceEEeCCCCCH
Confidence 357788888764
No 22
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=9.5e-08 Score=82.97 Aligned_cols=144 Identities=16% Similarity=0.197 Sum_probs=98.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc----ccccccCeEEEEE-ecCCCCHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD----EVKRKFDKILWVC-VSDTFDEFRV 169 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~-~~~~~~~~~~ 169 (246)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.++... ....|.+...|.. -+.......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH
Confidence 357898888888988885432 23577899999999999998887732 1234556656655 3444555553
Q ss_pred HHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhhc-CCCceEeCCCCCC
Q 045522 170 AKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 170 ~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~~-~~~~~~~l~~L~~ 245 (246)
. ++.+.+.. .+..+++-++|+|+++......++.|...+.....++.+|++|.+.+ +...+ .....+.+.+++.
T Consensus 79 r-~~~~~~~~-~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~ 154 (313)
T PRK05564 79 R-NIIEEVNK-KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSK 154 (313)
T ss_pred H-HHHHHHhc-CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCH
Confidence 3 45554432 23556788889999887766789999999998888899888886653 22222 2256777777654
No 23
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.76 E-value=1.2e-08 Score=88.02 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=76.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+|+|+++.+++|..++..... .......+.++|++|+|||+||+.+.+... ..+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHH
Confidence 3699999999999888854221 123355688999999999999999998432 222 1122211111222 22223
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-------------------CCCcEEEEecCChhHHhhcCC-
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-------------------LHESKILVTTRKGSVTSMMGS- 234 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-------------------~~gs~IliTtR~~~va~~~~~- 234 (246)
..+ +...+|++|+++.......+.+...+... .+.+-|..||+...+...+..
T Consensus 77 ~~~-------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNL-------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred Hhc-------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhh
Confidence 332 24468999999765433333343332211 124556667776544332211
Q ss_pred -CceEeCCCCCC
Q 045522 235 -TDIISVKELTK 245 (246)
Q Consensus 235 -~~~~~l~~L~~ 245 (246)
...+++++++.
T Consensus 150 ~~~~~~l~~l~~ 161 (305)
T TIGR00635 150 FGIILRLEFYTV 161 (305)
T ss_pred cceEEEeCCCCH
Confidence 34567777664
No 24
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.75 E-value=1.7e-08 Score=84.56 Aligned_cols=75 Identities=21% Similarity=0.180 Sum_probs=59.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC--CCHHHHHHHH-----HHHccCCCC------------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT--FDEFRVAKAM-----VEALDGHES------------ 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i-----~~~~~~~~~------------ 182 (246)
-..++|+|++|+|||||++.+|++.... +|+.++|+.+..+ .++.++++.+ +..+..+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999976544 8999999997666 7888888888 444443221
Q ss_pred -----CCCCeEEEEEeCCCC
Q 045522 183 -----RLGKRFLLVLDDVWD 197 (246)
Q Consensus 183 -----~~~kr~LlVlDdv~~ 197 (246)
..+++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 458999999999953
No 25
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=8.9e-08 Score=89.29 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=94.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-------------------ccccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-------------------KRKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 155 (246)
.+++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+.+...- .+.|..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 469999999999999886542 2367889999999999999988764321 1123334
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhh-cC
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSM-MG 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~-~~ 233 (246)
+.++.+....+..+ +.++..+... +..++..++|||+++.........|...+.....++.+|++|.+. .+... ..
T Consensus 90 iEIDAAs~~~VddI-Reli~~~~y~-P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS 167 (702)
T PRK14960 90 IEIDAASRTKVEDT-RELLDNVPYA-PTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167 (702)
T ss_pred EEecccccCCHHHH-HHHHHHHhhh-hhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH
Confidence 55555544444443 3344433221 134677899999999876667788888887766667777766553 33222 23
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+|+.
T Consensus 168 RCq~feFkpLs~ 179 (702)
T PRK14960 168 RCLQFTLRPLAV 179 (702)
T ss_pred hhheeeccCCCH
Confidence 357777877764
No 26
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.74 E-value=1e-07 Score=82.61 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=82.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccC-eEEEEEecCCCCHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFD-KILWVCVSDTFDEFRVAKAM 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 173 (246)
.+++|+++.++.+..++... ..+.+.++|++|+||||+|+.+.+..... .+. ..+-++.+...... .....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE-DWRENFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccccceEEeccccccchH-HHHHH
Confidence 45899999999999888543 23457999999999999999998743211 121 12222233333322 22233
Q ss_pred HHHccCCCCCC-CCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-CCCceEeCCCCC
Q 045522 174 VEALDGHESRL-GKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-GSTDIISVKELT 244 (246)
Q Consensus 174 ~~~~~~~~~~~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~~~~~~~l~~L~ 244 (246)
+..+....+.. ..+-++++|+++.........|...+......+.+|+++... .+...+ .....+++.+++
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~ 162 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCC
Confidence 33332222222 456799999997764444566777776555567777766432 221111 113456666654
No 27
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=8.1e-08 Score=88.70 Aligned_cols=144 Identities=16% Similarity=0.230 Sum_probs=93.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-------------------ccccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-------------------KRKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 155 (246)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++...- ...|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999998885432 2356789999999999999988763211 1123344
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEE-EecCChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKIL-VTTRKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il-iTtR~~~va~~~-~ 233 (246)
++++......... .+.+++.+.. .+..+++-++|+|+++......++.|+..+......+.+| +||....+...+ .
T Consensus 91 ieidaas~~gvd~-ir~ii~~~~~-~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~S 168 (546)
T PRK14957 91 IEIDAASRTGVEE-TKEILDNIQY-MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILS 168 (546)
T ss_pred EEeecccccCHHH-HHHHHHHHHh-hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHH
Confidence 5555444444433 2344444322 1245677899999998876667888888888765666555 555444444332 3
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+|+.
T Consensus 169 Rc~~~~f~~Ls~ 180 (546)
T PRK14957 169 RCIQLHLKHISQ 180 (546)
T ss_pred heeeEEeCCCCH
Confidence 367788888764
No 28
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=1.2e-07 Score=86.96 Aligned_cols=144 Identities=14% Similarity=0.155 Sum_probs=94.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc-----------------------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK----------------------- 151 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------------- 151 (246)
.+++|.+..++.|...+..+. -...+.++|++|+||||+|+.+++...-...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 468999999998888775432 2357889999999999999998774321110
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEE-EecCChhHHh
Q 045522 152 FDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKIL-VTTRKGSVTS 230 (246)
Q Consensus 152 F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il-iTtR~~~va~ 230 (246)
...++.++.........+ +.+++..... +..+++.++|+|+++......++.|...+......+.+| +||+...+..
T Consensus 96 h~Dv~eidaas~~~vd~I-r~iie~a~~~-P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDI-RRIIESAEYK-PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCcEEEeeccCCCCHHHH-HHHHHHHHhc-cccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 112334444444455444 3344443222 356788899999999876677888988888766666655 4555555554
Q ss_pred hcC-CCceEeCCCCCC
Q 045522 231 MMG-STDIISVKELTK 245 (246)
Q Consensus 231 ~~~-~~~~~~l~~L~~ 245 (246)
.+. ....+++.+++.
T Consensus 174 tI~SRc~~~ef~~ls~ 189 (507)
T PRK06645 174 TIISRCQRYDLRRLSF 189 (507)
T ss_pred HHHhcceEEEccCCCH
Confidence 442 356678877764
No 29
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=3.5e-08 Score=81.33 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=73.9
Q ss_pred cchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCC
Q 045522 101 VDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGH 180 (246)
Q Consensus 101 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 180 (246)
+..++.+.+++.. .....+.|+|++|+|||+||+.+++. ........+++++.+-.+. ...++..+
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~~~~~--- 88 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEVLEGL--- 88 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHHHhhc---
Confidence 3456666666532 33478999999999999999999884 3333445667766543211 01222221
Q ss_pred CCCCCCeEEEEEeCCCCCCcc-CH-HHHHHhhcCC-CCCcEEEEecCCh---------hHHhhcCCCceEeCCCCCC
Q 045522 181 ESRLGKRFLLVLDDVWDGDYI-KW-KPFYHCLKNG-LHESKILVTTRKG---------SVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 181 ~~~~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~IliTtR~~---------~va~~~~~~~~~~l~~L~~ 245 (246)
. +.-+|||||++..... .| ..+...+... ..+..+|+||+.. .+...+.....+++++++.
T Consensus 89 ---~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~ 161 (226)
T TIGR03420 89 ---E-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD 161 (226)
T ss_pred ---c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH
Confidence 1 2348999999875322 23 3355444321 2334788888753 2223333346788888864
No 30
>PRK04195 replication factor C large subunit; Provisional
Probab=98.71 E-value=1.1e-07 Score=87.24 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=85.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|.++..+++.+|+..... ....+.+.|+|++|+||||+|+.++++.. |. .+-++.+...+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 4699999999999999865331 12267899999999999999999999542 22 333455543333 3444444
Q ss_pred HHccCCCCCCC-CeEEEEEeCCCCCCc----cCHHHHHHhhcCCCCCcEEEEecCCh-hHHh-hc-CCCceEeCCCCC
Q 045522 175 EALDGHESRLG-KRFLLVLDDVWDGDY----IKWKPFYHCLKNGLHESKILVTTRKG-SVTS-MM-GSTDIISVKELT 244 (246)
Q Consensus 175 ~~~~~~~~~~~-kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~IliTtR~~-~va~-~~-~~~~~~~l~~L~ 244 (246)
........+.+ ++.+||||+++.... ..+..|...+... +..||+|+.+. .... .+ .....+++.+++
T Consensus 86 ~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~ 161 (482)
T PRK04195 86 GEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELRNACLMIEFKRLS 161 (482)
T ss_pred HHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHhccceEEEecCCC
Confidence 44443333443 788999999987532 2355666666533 33455555432 2211 12 124556666654
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.70 E-value=2e-08 Score=87.79 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=57.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+|+|+++.++.+...+..... .......+.++|++|+|||+||+.+++.... .+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEeccc-ccChHHHHHHH
Confidence 4699999999998877754211 1234567889999999999999999985432 21 1222211 11122233333
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCC
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGD 199 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~ 199 (246)
..+ +...+|+||+++...
T Consensus 98 ~~l-------~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 98 TNL-------EEGDVLFIDEIHRLS 115 (328)
T ss_pred Hhc-------ccCCEEEEecHhhcc
Confidence 332 245689999997653
No 32
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.70 E-value=4.2e-08 Score=93.53 Aligned_cols=135 Identities=21% Similarity=0.287 Sum_probs=75.5
Q ss_pred CccccccchHH---HHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEKN---ELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
.+++|.+..+. .+...+.. .....+.++|++|+||||||+.+++ ....+|. .++... ..... +.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~d-ir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVKD-LR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhHH-HH
Confidence 46889887764 34444432 3356778999999999999999998 3444442 122111 11111 12
Q ss_pred HHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE--ecCCh--hHHhhc-CCCceEeCCCCCC
Q 045522 172 AMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV--TTRKG--SVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 172 ~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili--TtR~~--~va~~~-~~~~~~~l~~L~~ 245 (246)
.++..+.......++..+||||+++.......+.|...+.. |+.++| ||.+. .+...+ .....+.+++|+.
T Consensus 95 ~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~ 170 (725)
T PRK13341 95 AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSD 170 (725)
T ss_pred HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHhhhhhHhhccccceecCCCCH
Confidence 22222211111234677999999987654555666655543 455555 34443 122222 2256788888874
No 33
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.70 E-value=1.9e-08 Score=82.09 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=57.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+|+|.++-++.+.-.+.... .....+..+.+|||+|+||||||+.+.++. ..+|. +.+.+.--.. .-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg~~i~k~-~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSGPAIEKA-GDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEECCC--SC-HHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHhcc--CCCeE---eccchhhhhH-HHHHHHH
Confidence 579999988887655543211 012567889999999999999999999944 34442 2332211111 2222333
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcC
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKN 212 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 212 (246)
..+ +++-+|++|+++......-+.|..++.+
T Consensus 97 ~~l-------~~~~ILFIDEIHRlnk~~qe~LlpamEd 127 (233)
T PF05496_consen 97 TNL-------KEGDILFIDEIHRLNKAQQEILLPAMED 127 (233)
T ss_dssp HT---------TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred Hhc-------CCCcEEEEechhhccHHHHHHHHHHhcc
Confidence 333 2456899999998765555566666654
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.4e-07 Score=90.59 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=93.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-------------------ccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-------------------KFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 155 (246)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++...-.. .|.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 469999999999988885432 234568999999999999999887432111 12223
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHHhh-cC
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVTSM-MG 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va~~-~~ 233 (246)
++++......+.. ++.+...+... +..+++.++|||+++......++.|+..+......+++|++| ....+... ..
T Consensus 91 iEidAas~~kVDd-IReLie~v~~~-P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS 168 (944)
T PRK14949 91 IEVDAASRTKVDD-TRELLDNVQYR-PSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS 168 (944)
T ss_pred EEeccccccCHHH-HHHHHHHHHhh-hhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH
Confidence 4444332233333 34555544322 245788899999999887677888888888765666655554 44444433 23
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....|++.+|+.
T Consensus 169 RCq~f~fkpLs~ 180 (944)
T PRK14949 169 RCLQFNLKSLTQ 180 (944)
T ss_pred hheEEeCCCCCH
Confidence 357888888864
No 35
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.67 E-value=1.6e-07 Score=81.45 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=76.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|.++..+.+..++..+ .-..++.++|++|+|||++|+.+++.. .. ....++.+. ... ..+...+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccH-HHHHHHH
Confidence 46899999999999888643 234677779999999999999998842 22 234455544 222 2222323
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCC-CccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
..+....+..+..-++|+|+++.. .......|...+.....++.+|+||...
T Consensus 89 ~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 89 TRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 322222223345678999999765 2223344555565555678888888653
No 36
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.9e-07 Score=85.14 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=87.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-------------------ccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-------------------KFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 155 (246)
.+++|.+...+.|...+..+. -...+.++|++|+||||+|+.+.+...... .+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 469999888777777664432 235688999999999999999876432110 01123
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~~~va~~~-~ 233 (246)
..++.+.......+ +.+.+.+.. .+..+++.++|+|+++.......+.|...+......+.+|+ |+....+...+ .
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~-~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S 166 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY-RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS 166 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh-ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc
Confidence 44555444444443 344444332 12446778999999977644556677777766544455444 44334444433 2
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+++.
T Consensus 167 R~~vv~f~~l~~ 178 (472)
T PRK14962 167 RCQVIEFRNISD 178 (472)
T ss_pred CcEEEEECCccH
Confidence 356777777764
No 37
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.3e-07 Score=82.00 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=83.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccccc--CeEEEEEecCCCCHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF--DKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~ 172 (246)
+.+.+|+++++++...|...-.. ....-+.|+|++|+|||+.++.+... ..... ..+++|++....+...++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 34999999999999887654321 22233889999999999999999994 44432 22799999999999999999
Q ss_pred HHHHccCCCC-----------------CCCCeEEEEEeCCCCCCccCHHHHHHhhc
Q 045522 173 MVEALDGHES-----------------RLGKRFLLVLDDVWDGDYIKWKPFYHCLK 211 (246)
Q Consensus 173 i~~~~~~~~~-----------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 211 (246)
|++.++.... -.++.+++|||+++......-+.|...+.
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r 148 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR 148 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh
Confidence 9998863322 45789999999998753222244444444
No 38
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=3.2e-07 Score=84.36 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=91.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccccc------------------CeEE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF------------------DKIL 156 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------------------~~~~ 156 (246)
.+++|.+...+.|...+.... -...+.++|++|+||||+|+.+++...-.+.+ ..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 368999998888888875532 23456899999999999999887744221111 1244
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecC-ChhHHhhc-CC
Q 045522 157 WVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTR-KGSVTSMM-GS 234 (246)
Q Consensus 157 wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR-~~~va~~~-~~ 234 (246)
+++.+....... ++++.+.+.. .+..+++.++|||+++......+..|...+......+.+|++|. ...+...+ ..
T Consensus 89 el~~~~~~~vd~-iR~l~~~~~~-~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDAASNNSVED-VRDLREKVLL-APLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred EecccccCCHHH-HHHHHHHHhh-ccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 555544444433 3344443332 12446777999999988765668888888877655566555554 34443333 23
Q ss_pred CceEeCCCCCC
Q 045522 235 TDIISVKELTK 245 (246)
Q Consensus 235 ~~~~~l~~L~~ 245 (246)
...+++.+|+.
T Consensus 167 c~~~~f~~ls~ 177 (504)
T PRK14963 167 TQHFRFRRLTE 177 (504)
T ss_pred eEEEEecCCCH
Confidence 56788887764
No 39
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=2.3e-07 Score=86.80 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=93.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc------------------------cc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV------------------------KR 150 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------------~~ 150 (246)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...- .+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 468998888888888886532 2356789999999999999988543211 01
Q ss_pred ccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHH
Q 045522 151 KFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVT 229 (246)
Q Consensus 151 ~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va 229 (246)
.+..+++++......+..+ +++++.+... +..++.-++|||+++......++.|+..+......+++|++| ....+.
T Consensus 91 ~h~D~~eldaas~~~Vd~i-Reli~~~~~~-p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEV-QQLLEQAVYK-PVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCceeecCcccccCHHHH-HHHHHHHHhC-cccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 2223445554444444443 3444443221 245667799999999887677888888888765666666554 444443
Q ss_pred hh-cCCCceEeCCCCCC
Q 045522 230 SM-MGSTDIISVKELTK 245 (246)
Q Consensus 230 ~~-~~~~~~~~l~~L~~ 245 (246)
.. ......+++++|+.
T Consensus 169 ~TIlSRc~~~~f~~Ls~ 185 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAP 185 (618)
T ss_pred HHHHHhceeeecCCCCH
Confidence 33 23367788888764
No 40
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=3.1e-07 Score=83.81 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=95.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccc------------------c-ccccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDE------------------V-KRKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~-~~~F~~~ 155 (246)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+..... + ...+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 469999988888887775432 234789999999999999988865210 0 1123345
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va~~~-~ 233 (246)
+.++.+...+...+ +.+++.+.. .+..++.-++|+|+++.......+.|...+....+.+++|++| ....+...+ .
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~-~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S 165 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCY-LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS 165 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHh-ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH
Confidence 66776666666553 345554432 2355678899999998876566788888888776777666555 444554433 2
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+++.
T Consensus 166 Rc~~~~f~~l~~ 177 (491)
T PRK14964 166 RCQRFDLQKIPT 177 (491)
T ss_pred hheeeecccccH
Confidence 356677776653
No 41
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=2e-07 Score=87.46 Aligned_cols=144 Identities=16% Similarity=0.197 Sum_probs=93.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-------------------cccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK-------------------RKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 155 (246)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+...-. +.|...
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 469999999998888885432 23457899999999999999887643211 112223
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~~~va~~~-~ 233 (246)
+.++......+.. ++.+++.+... +..++..++|||+++.......+.|+..+......+++|+ ||....+...+ .
T Consensus 91 ieidaas~~~Vdd-iR~li~~~~~~-p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 91 IEIDAASRTKVED-TRELLDNVQYA-PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred eeecccccCCHHH-HHHHHHHHHhh-hhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh
Confidence 4444443334433 34455544322 1456788999999998876778888888887656665555 44445554332 3
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....|.+.+|+.
T Consensus 169 RC~~~~f~~Ls~ 180 (647)
T PRK07994 169 RCLQFHLKALDV 180 (647)
T ss_pred hheEeeCCCCCH
Confidence 367888888864
No 42
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=2.1e-07 Score=85.73 Aligned_cols=143 Identities=13% Similarity=0.185 Sum_probs=94.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-------------------ccccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-------------------KRKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 155 (246)
.+++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+.+...- .+.|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999995532 2346789999999999999888764311 1123335
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~ 233 (246)
+.++......+..+ +++++.+... +..++..++|+|+++.......+.|...+......+++|++|-+ ..+...+ .
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~-p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S 168 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA-PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS 168 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc-cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH
Confidence 66665555566554 3455544322 24567789999999987666788888888877667776665533 3333222 2
Q ss_pred CCceEeCCCCC
Q 045522 234 STDIISVKELT 244 (246)
Q Consensus 234 ~~~~~~l~~L~ 244 (246)
....+++.+++
T Consensus 169 Rc~~~~f~~l~ 179 (509)
T PRK14958 169 RCLQFHLAQLP 179 (509)
T ss_pred HhhhhhcCCCC
Confidence 24556666665
No 43
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.60 E-value=3.8e-07 Score=81.82 Aligned_cols=106 Identities=11% Similarity=0.197 Sum_probs=75.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHH-
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAM- 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i- 173 (246)
.++++.+...+.+...|... ..+.++|++|+|||++|+.+++.......|..+.||.++..++...++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788889999999998643 468889999999999999999865555567889999998877766655322
Q ss_pred ----------------HHHccCCCCCCCCeEEEEEeCCCCCCccC-HHHHHHhhc
Q 045522 174 ----------------VEALDGHESRLGKRFLLVLDDVWDGDYIK-WKPFYHCLK 211 (246)
Q Consensus 174 ----------------~~~~~~~~~~~~kr~LlVlDdv~~~~~~~-~~~l~~~l~ 211 (246)
+..+.. -.+++++||+|++...+... +.++...+.
T Consensus 247 P~~vgy~~~~G~f~~~~~~A~~---~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 PNGVGFRRKDGIFYNFCQQAKE---QPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CCCCCeEecCchHHHHHHHHHh---cccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 111100 12468999999998765332 555555444
No 44
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.60 E-value=5.2e-08 Score=85.75 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=56.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC--CHHHHHHHHHHHccCCC---C---------------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--DEFRVAKAMVEALDGHE---S--------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~---~--------------- 182 (246)
.-..|+|++|+||||||+.+|++.... +|+.++||.+.++. ++.++++.+...+-.+. +
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999966544 89999999998887 67777777753221111 0
Q ss_pred ----CCCCeEEEEEeCCCC
Q 045522 183 ----RLGKRFLLVLDDVWD 197 (246)
Q Consensus 183 ----~~~kr~LlVlDdv~~ 197 (246)
..+++.+|++|++..
T Consensus 249 e~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHcCCCEEEEEEChHH
Confidence 468999999999953
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=2.3e-07 Score=84.06 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=89.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc-------------------cCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK-------------------FDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 155 (246)
.+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++...-... ...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 468999999999888885432 1246889999999999999998774321110 0012
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEE-EecCChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKIL-VTTRKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il-iTtR~~~va~~~-~ 233 (246)
+.++......... ++++.+.+... +..++..++|+|+++......++.|+..+........+| .||....+...+ .
T Consensus 93 iEIdaas~~gVd~-IReL~e~l~~~-p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 93 LEIDAASNRGIEN-IRELRDNVKFA-PMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred eeechhhcccHHH-HHHHHHHHHhh-hhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 2233322333322 23344433221 144677899999999887677888888887654555544 555545554333 2
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....|.+.+++.
T Consensus 171 RCq~~~f~~ls~ 182 (484)
T PRK14956 171 RCQDFIFKKVPL 182 (484)
T ss_pred hhheeeecCCCH
Confidence 356778877763
No 46
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.58 E-value=4.7e-07 Score=75.45 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=66.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC-c
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD-Y 200 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~-~ 200 (246)
.+.+.|+|++|+|||+|++.+++.. ...-..+.++++...... ...+.+.+. +--+|+|||+.... .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~~---~~~~~~~~~-------~~dlliiDdi~~~~~~ 112 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAWF---VPEVLEGME-------QLSLVCIDNIECIAGD 112 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhhh---hHHHHHHhh-------hCCEEEEeChhhhcCC
Confidence 3578999999999999999988843 223345667766442111 112222221 12389999997642 1
Q ss_pred cCHHH-HHHhhcCC-CCC-cEEEEecCCh---------hHHhhcCCCceEeCCCCCC
Q 045522 201 IKWKP-FYHCLKNG-LHE-SKILVTTRKG---------SVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 201 ~~~~~-l~~~l~~~-~~g-s~IliTtR~~---------~va~~~~~~~~~~l~~L~~ 245 (246)
..|+. +...+... ..| .++|+||+.. .+.+.+....+++++++++
T Consensus 113 ~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~ 169 (235)
T PRK08084 113 ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSD 169 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCH
Confidence 34543 33333211 123 4688988653 5556666678888888864
No 47
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=5.5e-07 Score=88.53 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=77.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec-CCCCHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS-DTFDEFRVAKAM 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i 173 (246)
+.++-|..-.+ .|... ...+++.|.|++|.||||++..+... ++.++|+++. .+.++..+...+
T Consensus 14 ~~~~~R~rl~~----~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLA----KLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHH----HHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 45666664444 34221 45689999999999999999988752 2369999986 445666665666
Q ss_pred HHHccCC--------------C--C------------C--CCCeEEEEEeCCCCCCccCHHH-HHHhhcCCCCCcEEEEe
Q 045522 174 VEALDGH--------------E--S------------R--LGKRFLLVLDDVWDGDYIKWKP-FYHCLKNGLHESKILVT 222 (246)
Q Consensus 174 ~~~~~~~--------------~--~------------~--~~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~IliT 222 (246)
+..+... . . + .+.+.+|||||++..+...... +...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 5555310 0 0 1 2678999999998765444443 44444444566789899
Q ss_pred cCCh
Q 045522 223 TRKG 226 (246)
Q Consensus 223 tR~~ 226 (246)
||..
T Consensus 159 sR~~ 162 (903)
T PRK04841 159 SRNL 162 (903)
T ss_pred eCCC
Confidence 9983
No 48
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.58 E-value=2.5e-07 Score=76.54 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=61.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYI 201 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~ 201 (246)
...+.|+|++|+|||+||+.+++... ..-....+++....... +. .....-+||+||++..+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~~~~~i~~~~~~~~-------~~-------~~~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAASPLLA-------FD-------FDPEAELYAVDDVERLDDA 105 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEehHHhHHH-------Hh-------hcccCCEEEEeChhhcCch
Confidence 46788999999999999999988431 11224455554432111 00 1123447999999765433
Q ss_pred CHHHHHHhhcCC-CCCc-EEEEecCChhHH--------hhcCCCceEeCCCCCC
Q 045522 202 KWKPFYHCLKNG-LHES-KILVTTRKGSVT--------SMMGSTDIISVKELTK 245 (246)
Q Consensus 202 ~~~~l~~~l~~~-~~gs-~IliTtR~~~va--------~~~~~~~~~~l~~L~~ 245 (246)
.-..|...+... ..+. .+|+|++..... +.+.....+++++|++
T Consensus 106 ~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~ 159 (227)
T PRK08903 106 QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSD 159 (227)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCH
Confidence 334455555321 2333 466666643221 1233346788888864
No 49
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=4.9e-07 Score=87.36 Aligned_cols=143 Identities=11% Similarity=0.070 Sum_probs=92.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc----------------------ccc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK----------------------RKF 152 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~F 152 (246)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+...-. .++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 369999999999988886532 22467899999999999999886643210 112
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHHhh
Q 045522 153 DKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVTSM 231 (246)
Q Consensus 153 ~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va~~ 231 (246)
.+++++......+..+. ++.+.+... ...++..++|||+++......++.|+.+|......+.+|++| ....+...
T Consensus 90 -dv~eidaas~~~Vd~iR-~l~~~~~~~-p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 90 -DVTEIDAASHGGVDDAR-ELRERAFFA-PAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred -cEEEecccccCCHHHHH-HHHHHHHhc-hhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 23445443433444443 343332211 245677789999999887777888999998776666666555 44445444
Q ss_pred cC-CCceEeCCCCCC
Q 045522 232 MG-STDIISVKELTK 245 (246)
Q Consensus 232 ~~-~~~~~~l~~L~~ 245 (246)
+. ....|++..|+.
T Consensus 167 IrSRc~~v~F~~l~~ 181 (824)
T PRK07764 167 IRSRTHHYPFRLVPP 181 (824)
T ss_pred HHhheeEEEeeCCCH
Confidence 33 367778777753
No 50
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.56 E-value=3.2e-07 Score=87.57 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=71.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc---cccc--CeEEEEEecCCCCHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV---KRKF--DKILWVCVSDTFDEFRV 169 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F--~~~~wv~~~~~~~~~~~ 169 (246)
+.+.|||+++++|...|...-. +.....++.|+|++|+|||+.++.+.+.... +... -.+++|++....+...+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 5789999999999888865321 1123367889999999999999999874321 1111 24678888776777777
Q ss_pred HHHHHHHccCCCC----------------C---CCCeEEEEEeCCCCC
Q 045522 170 AKAMVEALDGHES----------------R---LGKRFLLVLDDVWDG 198 (246)
Q Consensus 170 ~~~i~~~~~~~~~----------------~---~~kr~LlVlDdv~~~ 198 (246)
...|..++....+ + .....+||||+++..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 7777777743322 1 123459999999765
No 51
>PTZ00202 tuzin; Provisional
Probab=98.55 E-value=8.2e-07 Score=79.14 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=59.9
Q ss_pred cCCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHH
Q 045522 91 LIDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 91 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 170 (246)
+.+.+.|+||+.++..|...|...+. ...+++.|.|++|+|||||++.+..... + ...+++.. +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHH
Confidence 34557899999999999998865432 2346999999999999999999997432 1 23333333 678999
Q ss_pred HHHHHHccCC
Q 045522 171 KAMVEALDGH 180 (246)
Q Consensus 171 ~~i~~~~~~~ 180 (246)
..++.+++.+
T Consensus 327 r~LL~ALGV~ 336 (550)
T PTZ00202 327 RSVVKALGVP 336 (550)
T ss_pred HHHHHHcCCC
Confidence 9999999964
No 52
>PRK08727 hypothetical protein; Validated
Probab=98.54 E-value=5.7e-07 Score=74.86 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=66.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC-cc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD-YI 201 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~-~~ 201 (246)
..+.|+|++|+|||+|++.+++. .......+.|+++.+.. ..+..+++.+ .+.-+|||||+.... ..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~~---~~~~~~~~~l-------~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAAA---GRLRDALEAL-------EGRSLVALDGLESIAGQR 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHhh---hhHHHHHHHH-------hcCCEEEEeCcccccCCh
Confidence 45999999999999999999884 33333466677754322 1122233332 133589999997542 12
Q ss_pred CHHH-HHHhhcCC-CCCcEEEEecCC---------hhHHhhcCCCceEeCCCCCC
Q 045522 202 KWKP-FYHCLKNG-LHESKILVTTRK---------GSVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 202 ~~~~-l~~~l~~~-~~gs~IliTtR~---------~~va~~~~~~~~~~l~~L~~ 245 (246)
.|.. +...+... ..|..+|+||+. +.+.+.+.....+++++++.
T Consensus 110 ~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~ 164 (233)
T PRK08727 110 EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD 164 (233)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCH
Confidence 3433 33333221 345679999875 33444444466778887764
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=7.9e-07 Score=83.61 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=87.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-------------------cccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK-------------------RKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 155 (246)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-. ..|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 469999999999999886532 23578999999999999999886632111 112223
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~ 233 (246)
+.++........ .++.++...... +..+++.++|||+++.........|+..+......+++|++|.+. .+...+ +
T Consensus 91 lEidaAs~~gVd-~IRelle~a~~~-P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 91 LEIDAASNTGID-NIREVLENAQYA-PTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred EEEeccccCCHH-HHHHHHHHHHhh-hhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 455544444443 334444433211 134567899999998776555777888887655566777666443 222221 2
Q ss_pred CCceEeCCCCC
Q 045522 234 STDIISVKELT 244 (246)
Q Consensus 234 ~~~~~~l~~L~ 244 (246)
....+.+.+++
T Consensus 169 RC~~f~f~~Ls 179 (709)
T PRK08691 169 RCLQFVLRNMT 179 (709)
T ss_pred HHhhhhcCCCC
Confidence 23445555554
No 54
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=9e-07 Score=82.53 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=91.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc---------------------ccC
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR---------------------KFD 153 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~ 153 (246)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.....-.. ...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 469999999999999886432 234578999999999999988876422100 011
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCChhHHhhc
Q 045522 154 KILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRKGSVTSMM 232 (246)
Q Consensus 154 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~~~va~~~ 232 (246)
.++.++......+..+ +++.+.+... +..+++-++|+|+++.......+.|+..+......+.+|+ ||....+...+
T Consensus 88 dvieidaas~~gvd~i-Rel~~~~~~~-P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 88 DVVELDAASHGGVDDT-RELRDRAFYA-PAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred eEEEeccccccCHHHH-HHHHHHHHhh-hhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 2344544443344433 3344333211 2345677999999988776778888888887655666554 55545554433
Q ss_pred -CCCceEeCCCCCC
Q 045522 233 -GSTDIISVKELTK 245 (246)
Q Consensus 233 -~~~~~~~l~~L~~ 245 (246)
.....+++.+++.
T Consensus 166 ~SRc~~~~F~~l~~ 179 (584)
T PRK14952 166 RSRTHHYPFRLLPP 179 (584)
T ss_pred HHhceEEEeeCCCH
Confidence 3357777777653
No 55
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.53 E-value=1.5e-06 Score=76.61 Aligned_cols=142 Identities=12% Similarity=0.184 Sum_probs=86.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc--------------------cccCe
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK--------------------RKFDK 154 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 154 (246)
.+++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+.....-. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 468999999999999885432 23578899999999999998876532110 1232
Q ss_pred EEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhhc-
Q 045522 155 ILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSMM- 232 (246)
Q Consensus 155 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~~- 232 (246)
.++++........ -.+.+++.+.. .+..+++-++|+|+++.........+...+......+.+|++|.+.. +...+
T Consensus 88 ~~~~~~~~~~~~~-~~~~l~~~~~~-~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~ 165 (355)
T TIGR02397 88 VIEIDAASNNGVD-DIREILDNVKY-APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATIL 165 (355)
T ss_pred EEEeeccccCCHH-HHHHHHHHHhc-CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHH
Confidence 2444433223322 23344444332 22445677999999977654557778888866556677666665433 33222
Q ss_pred CCCceEeCCCCC
Q 045522 233 GSTDIISVKELT 244 (246)
Q Consensus 233 ~~~~~~~l~~L~ 244 (246)
.....+++.+++
T Consensus 166 sr~~~~~~~~~~ 177 (355)
T TIGR02397 166 SRCQRFDFKRIP 177 (355)
T ss_pred hheeEEEcCCCC
Confidence 224566666654
No 56
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.2e-06 Score=81.22 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=89.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-------------------cccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK-------------------RKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 155 (246)
.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.....-. ..|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999998886532 23467899999999999999886533110 123334
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~ 233 (246)
+++..+....... ++.++..+.. .+..+++.++|+|+++.......+.|...+......+.+|++|-+ ..+...+ .
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~-~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S 168 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQY-APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 168 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhh-CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH
Confidence 5555444444433 3445554422 225677889999999887656677888888776556666655533 3332221 1
Q ss_pred CCceEeCCCCC
Q 045522 234 STDIISVKELT 244 (246)
Q Consensus 234 ~~~~~~l~~L~ 244 (246)
....+++.+++
T Consensus 169 Rc~~~~f~~l~ 179 (527)
T PRK14969 169 RCLQFNLKQMP 179 (527)
T ss_pred HHHHHhcCCCC
Confidence 13555555554
No 57
>PRK05642 DNA replication initiation factor; Validated
Probab=98.52 E-value=6.6e-07 Score=74.50 Aligned_cols=112 Identities=16% Similarity=0.310 Sum_probs=65.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC-c
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD-Y 200 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~-~ 200 (246)
...+.|+|+.|+|||.|++.+++.. ...-..++|++..+-... ...+.+.+. +- -+|++||+.... .
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~~~~~---~~~~~~~~~------~~-d~LiiDDi~~~~~~ 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAELLDR---GPELLDNLE------QY-ELVCLDDLDVIAGK 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHHHHhh---hHHHHHhhh------hC-CEEEEechhhhcCC
Confidence 3678999999999999999998743 222345677776432111 112222221 11 278999997431 1
Q ss_pred cCHHH-HHHhhcCC-CCCcEEEEecCCh---------hHHhhcCCCceEeCCCCCC
Q 045522 201 IKWKP-FYHCLKNG-LHESKILVTTRKG---------SVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 201 ~~~~~-l~~~l~~~-~~gs~IliTtR~~---------~va~~~~~~~~~~l~~L~~ 245 (246)
..|.. |...+... ..|..+|+|+... .+.+.++...+++++++++
T Consensus 113 ~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~ 168 (234)
T PRK05642 113 ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSD 168 (234)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCH
Confidence 34544 55544321 3466788888652 3333344456777887765
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.52 E-value=4.1e-07 Score=68.13 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=58.1
Q ss_pred EEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-----CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-----DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD 199 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-----~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~ 199 (246)
|.|+|++|+|||++|+.+++... . ..+.++.+... +....+..++....... ++.+|+|||++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~---~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--F---PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA----KPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--S---EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS----TSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--c---ccccccccccccccccccccccccccccccccc----cceeeeeccchhcc
Confidence 57899999999999999999542 2 34555543322 34455555666553321 57999999997653
Q ss_pred ccC-----------HHHHHHhhcCCC---CCcEEEEecCCh
Q 045522 200 YIK-----------WKPFYHCLKNGL---HESKILVTTRKG 226 (246)
Q Consensus 200 ~~~-----------~~~l~~~l~~~~---~gs~IliTtR~~ 226 (246)
... ...|...+.... .+..||.||...
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred cccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 333 344555554332 235677777663
No 59
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=9.5e-07 Score=82.71 Aligned_cols=144 Identities=11% Similarity=0.144 Sum_probs=92.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc-----------------------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK----------------------- 151 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------------- 151 (246)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 479999999999999886532 2347889999999999999988764321110
Q ss_pred -cCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHH
Q 045522 152 -FDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVT 229 (246)
Q Consensus 152 -F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va 229 (246)
..-++++.......+.. ++.+++.+... +..+++-++|+|+++.......+.|..++.....++.+|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~-IReIie~~~~~-P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDD-IREIIESVRYR-PVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHHhc-hhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 11234454444444444 33455544322 245667789999998876566788888888776677765554 444444
Q ss_pred hhcC-CCceEeCCCCCC
Q 045522 230 SMMG-STDIISVKELTK 245 (246)
Q Consensus 230 ~~~~-~~~~~~l~~L~~ 245 (246)
..+. ....+++..++.
T Consensus 177 ~tI~SRcq~~~f~~l~~ 193 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEA 193 (598)
T ss_pred HHHHhheeEEEecCCCH
Confidence 3332 256677776653
No 60
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=5.2e-07 Score=80.88 Aligned_cols=142 Identities=13% Similarity=0.178 Sum_probs=86.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc------------------------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR------------------------ 150 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------ 150 (246)
.+++|.+...+.|...+..+. -...+.++|++|+||||+|+.+.+...-..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999988888888775432 234588999999999999988776332111
Q ss_pred ----ccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CC
Q 045522 151 ----KFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RK 225 (246)
Q Consensus 151 ----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~ 225 (246)
+++ ...+..........+ .++.+.+... +..+++.++|+|+++......++.|...+.+..+.+.+|++| +.
T Consensus 91 ~~~~~~n-~~~~~~~~~~~id~I-r~l~~~~~~~-p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 91 DAGTSLN-ISEFDAASNNSVDDI-RLLRENVRYG-PQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred hcCCCCC-eEeecccccCCHHHH-HHHHHHHhhc-hhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 111 122222222223333 3344444322 244677799999998876567888888888776677765554 44
Q ss_pred hhHHhhcC-CCceEeCCCCC
Q 045522 226 GSVTSMMG-STDIISVKELT 244 (246)
Q Consensus 226 ~~va~~~~-~~~~~~l~~L~ 244 (246)
..+...+. ....+++.+++
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~ 187 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIP 187 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCC
Confidence 44443322 13456666664
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=8e-07 Score=82.56 Aligned_cols=144 Identities=14% Similarity=0.175 Sum_probs=89.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-------------------ccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-------------------KFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 155 (246)
.+++|++..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+...-.. .....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 468999999999998885432 236788999999999999998866321100 01123
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va~~~-~ 233 (246)
++++.........+ +.+...+... +..+++-++|+|+++......+..|...+......+.+|++| ....+...+ .
T Consensus 91 ieIdaas~igVd~I-ReIi~~~~~~-P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 91 VELDAASNNGVDEI-RNIIDNINYL-PTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred EEeccccccCHHHH-HHHHHHHHhc-hhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh
Confidence 44544333444333 4444443322 233455679999998876567788888887765566655444 444443332 3
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+++.
T Consensus 169 Rcq~ieF~~Ls~ 180 (605)
T PRK05896 169 RCQRYNFKKLNN 180 (605)
T ss_pred hhhhcccCCCCH
Confidence 356777777653
No 62
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.4e-06 Score=77.73 Aligned_cols=149 Identities=10% Similarity=0.097 Sum_probs=91.8
Q ss_pred CccccccchHHHHHHHhhCCCCC----CCCCeEEEEEEeeCCchHHHHHHHHhcccccc------------------ccc
Q 045522 95 EEICGRVDEKNELLSKLLCESSE----QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK------------------RKF 152 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F 152 (246)
.+++|.+..++.|.+.+...... ...-...+.++|++|+|||++|+.+.....-. ...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999998888654310 00134678899999999999998876522110 011
Q ss_pred CeEEEEEec-CCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHh
Q 045522 153 DKILWVCVS-DTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTS 230 (246)
Q Consensus 153 ~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~ 230 (246)
.-..++... ......+ ++.+.+.+... +..+++.++|+|+++.......+.|...+.....++.+|++|.+ ..+..
T Consensus 85 pD~~~i~~~~~~i~i~~-iR~l~~~~~~~-p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llp 162 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE-VRELVTIAARR-PSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLP 162 (394)
T ss_pred CCEEEeccccccCCHHH-HHHHHHHHHhC-cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChH
Confidence 122333322 2233433 34555554332 24566778999999887656667788888776666766666555 44444
Q ss_pred hc-CCCceEeCCCCCC
Q 045522 231 MM-GSTDIISVKELTK 245 (246)
Q Consensus 231 ~~-~~~~~~~l~~L~~ 245 (246)
.+ .....+.+.+++.
T Consensus 163 TIrSRc~~i~f~~~~~ 178 (394)
T PRK07940 163 TIRSRCRHVALRTPSV 178 (394)
T ss_pred HHHhhCeEEECCCCCH
Confidence 43 3367788877764
No 63
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.44 E-value=3.5e-06 Score=67.62 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=74.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccc-------------------cccCeEEEEEec-CCCCHHHHHHHHHHHccCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVK-------------------RKFDKILWVCVS-DTFDEFRVAKAMVEALDGHE 181 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~ 181 (246)
...+.++|+.|+|||++|+.+.....-. ..+....++... .....+ .++.+++.+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~-~i~~i~~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVD-QVRELVEFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHH-HHHHHHHHHccCc
Confidence 3678899999999999998876632111 012112333322 233333 3334555544322
Q ss_pred CCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-CCCceEeCCCCCC
Q 045522 182 SRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 182 ~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~~~~~~~l~~L~~ 245 (246)
..+.+.++|+|+++.......+.|...+......+.+|++|++. .+...+ .....+++.+++.
T Consensus 93 -~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~ 157 (188)
T TIGR00678 93 -QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSE 157 (188)
T ss_pred -ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCH
Confidence 45677899999998876566778888887766667777776553 332222 2256788887764
No 64
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.1e-06 Score=80.65 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=87.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-------------------------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK------------------------- 149 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------- 149 (246)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999998888888775432 23458899999999999998776533111
Q ss_pred ---cccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCC
Q 045522 150 ---RKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRK 225 (246)
Q Consensus 150 ---~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~ 225 (246)
.+|+. ..+.......+..+. ++.+.+... +..+++-++|+|+++.......+.|..++......+.+|+ |++.
T Consensus 91 ~~g~~~n~-~~~d~~s~~~vd~Ir-~l~e~~~~~-P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 91 DAGTSLNI-SEFDAASNNSVDDIR-QLRENVRYG-PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred hccCCCCe-EEecccccCCHHHHH-HHHHHHHhh-hhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 12222 122222223333333 344444221 2445677899999988765667888888887656666554 4444
Q ss_pred hhHHhhc-CCCceEeCCCCCC
Q 045522 226 GSVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 226 ~~va~~~-~~~~~~~l~~L~~ 245 (246)
..+...+ .....+++.+++.
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~ 188 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPL 188 (620)
T ss_pred hhhhHHHHhhceEEecCCCCH
Confidence 4444333 3367777777753
No 65
>PRK09087 hypothetical protein; Validated
Probab=98.42 E-value=7.8e-07 Score=73.66 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=62.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYI 201 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~ 201 (246)
.+.+.|+|+.|+|||+|++.++.... ..|++.. .+...++..+. .-+|++||+.... .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~~--------~~~l~iDDi~~~~-~ 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAAA--------EGPVLIEDIDAGG-F 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhhh--------cCeEEEECCCCCC-C
Confidence 36789999999999999999887431 2244432 12222222221 1378899996542 1
Q ss_pred CHHHHHHhhcCC-CCCcEEEEecCC---------hhHHhhcCCCceEeCCCCCC
Q 045522 202 KWKPFYHCLKNG-LHESKILVTTRK---------GSVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 202 ~~~~l~~~l~~~-~~gs~IliTtR~---------~~va~~~~~~~~~~l~~L~~ 245 (246)
.-..+...+... ..|..+|+|++. +.+.+.+....++++++++.
T Consensus 102 ~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~ 155 (226)
T PRK09087 102 DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDD 155 (226)
T ss_pred CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCH
Confidence 223344444311 336679998863 45666666778889988875
No 66
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.40 E-value=5.7e-07 Score=79.56 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=57.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC--CCHHHHHHHHHH-----HccCCCC-------------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT--FDEFRVAKAMVE-----ALDGHES------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~-----~~~~~~~------------- 182 (246)
..++|+|++|+|||||++.+++.... ++|+..+|+.+.++ .++.++++.++. .+..+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 56899999999999999999996543 37999999998866 788888888833 3332211
Q ss_pred ----CCCCeEEEEEeCCCC
Q 045522 183 ----RLGKRFLLVLDDVWD 197 (246)
Q Consensus 183 ----~~~kr~LlVlDdv~~ 197 (246)
..+++.+|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 568999999999953
No 67
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.40 E-value=3.6e-07 Score=81.01 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=55.4
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-C-C
Q 045522 95 EEICGRVDEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-F-D 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~-~ 165 (246)
.++.|+++.++++.+.+...-.. +-...+-+.|+|++|+|||+||+.+++ ....+|-.+....+... . .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCEEecchHHHHHHhhhH
Confidence 46889999999998876422100 112245689999999999999999998 33444422211000000 0 1
Q ss_pred HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 166 EFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
....+..++.... .....+|+||+++.
T Consensus 200 ~~~~i~~~f~~a~-----~~~p~il~iDEiD~ 226 (364)
T TIGR01242 200 GARLVREIFELAK-----EKAPSIIFIDEIDA 226 (364)
T ss_pred HHHHHHHHHHHHH-----hcCCcEEEhhhhhh
Confidence 1122333333221 23567999999975
No 68
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=3.7e-06 Score=74.60 Aligned_cols=144 Identities=16% Similarity=0.255 Sum_probs=84.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc------ccccCe-EEEEEecCCCCHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV------KRKFDK-ILWVCVSDTFDEF 167 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~-~~wv~~~~~~~~~ 167 (246)
.+++|.+...+.+.+.+..+ .-...+.++|++|+||||+|+.+.+...- ...|.. ++.++.....+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 46899999999999988543 22468889999999999999988763211 112221 2222222222233
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHHhhc-CCCceEeCCCCCC
Q 045522 168 RVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va~~~-~~~~~~~l~~L~~ 245 (246)
. +..+++.+... +..+++-++++|+++......+..+...+......+.+|+++ ....+...+ .....+++++++.
T Consensus 92 ~-i~~l~~~~~~~-p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~ 169 (367)
T PRK14970 92 D-IRNLIDQVRIP-PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITI 169 (367)
T ss_pred H-HHHHHHHHhhc-cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccH
Confidence 3 33444443221 234566689999997764455677777776554555555554 333332222 2245677777653
No 69
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=2.2e-06 Score=80.09 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=87.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc-------------------cCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK-------------------FDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 155 (246)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-... ..-+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368998888888887775432 2467889999999999999988764321110 1113
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~ 233 (246)
++++......+..+ +.+.+.+... +..+++.++|||+++......+..|...+......+.+|++|.+ ..+...+ .
T Consensus 91 ~eId~a~~~~Id~i-R~L~~~~~~~-p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S 168 (624)
T PRK14959 91 VEIDGASNRGIDDA-KRLKEAIGYA-PMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS 168 (624)
T ss_pred EEEecccccCHHHH-HHHHHHHHhh-hhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh
Confidence 44543333334332 3343333221 24567789999999887656677888888765455656555544 4444332 2
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++++|+.
T Consensus 169 Rcq~i~F~pLs~ 180 (624)
T PRK14959 169 RCQHFTFTRLSE 180 (624)
T ss_pred hhhccccCCCCH
Confidence 245677777753
No 70
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=5.1e-06 Score=78.24 Aligned_cols=143 Identities=16% Similarity=0.248 Sum_probs=92.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccc---------------------cccccC
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDE---------------------VKRKFD 153 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 153 (246)
.+++|.+...+.|...+..+. -...+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 469999999999998885432 235688999999999999987665321 112343
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCChhHHhhc
Q 045522 154 KILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRKGSVTSMM 232 (246)
Q Consensus 154 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~~~va~~~ 232 (246)
+..++.....+...+ ..++..+... +..+++-++|+|+++......++.|...+......+.+|+ |+....+...+
T Consensus 92 -~~~ld~~~~~~vd~I-r~li~~~~~~-P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI 168 (614)
T PRK14971 92 -IHELDAASNNSVDDI-RNLIEQVRIP-PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168 (614)
T ss_pred -eEEecccccCCHHHH-HHHHHHHhhC-cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHH
Confidence 334444434444433 3444444222 2456777899999988766678889999987766676555 44545554433
Q ss_pred -CCCceEeCCCCCC
Q 045522 233 -GSTDIISVKELTK 245 (246)
Q Consensus 233 -~~~~~~~l~~L~~ 245 (246)
.....+++.+++.
T Consensus 169 ~SRc~iv~f~~ls~ 182 (614)
T PRK14971 169 LSRCQIFDFNRIQV 182 (614)
T ss_pred HhhhheeecCCCCH
Confidence 3366777777754
No 71
>PRK08116 hypothetical protein; Validated
Probab=98.34 E-value=1.7e-06 Score=73.48 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=56.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC---------CCCCeEEEEEe
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES---------RLGKRFLLVLD 193 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~kr~LlVlD 193 (246)
..+.|+|.+|+|||.||..+++.. ......++++++ ..++..+...+..... +. .--|||||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~------~~ll~~i~~~~~~~~~~~~~~~~~~l~-~~dlLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNF------PQLLNRIKSTYKSSGKEDENEIIRSLV-NADLLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhccccccHHHHHHHhc-CCCEEEEe
Confidence 458899999999999999999954 323345667654 3344444333321110 22 22389999
Q ss_pred CCCCCCccCHHH--HHHhhcCC-CCCcEEEEecCCh
Q 045522 194 DVWDGDYIKWKP--FYHCLKNG-LHESKILVTTRKG 226 (246)
Q Consensus 194 dv~~~~~~~~~~--l~~~l~~~-~~gs~IliTtR~~ 226 (246)
|+......+|.. |...+... ..+..+|+||...
T Consensus 186 Dlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 186 DLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 996543344543 44444321 3455688888763
No 72
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.34 E-value=1.1e-05 Score=63.28 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=86.4
Q ss_pred cccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc---c---------------cccCeEEEEEe
Q 045522 99 GRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV---K---------------RKFDKILWVCV 160 (246)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---------------~~F~~~~wv~~ 160 (246)
|.++..+.|.+.+..+ .-...+.++|+.|+||+++|..+.+..-- . .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4455566666666443 22346889999999999999776553211 1 22344556654
Q ss_pred cC---CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhhc-CCC
Q 045522 161 SD---TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSMM-GST 235 (246)
Q Consensus 161 ~~---~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~~-~~~ 235 (246)
.. ......+. .+...+.... ..++.-++|||+++.........|+..+.....++.+|++|.+.+ +...+ ...
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~-~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc 153 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP-SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRC 153 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS--TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTS
T ss_pred ccccchhhHHHHH-HHHHHHHHHH-hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhc
Confidence 43 35565555 6666654432 346788999999999877888999999998888899888887753 44333 446
Q ss_pred ceEeCCCCC
Q 045522 236 DIISVKELT 244 (246)
Q Consensus 236 ~~~~l~~L~ 244 (246)
..+.+.+||
T Consensus 154 ~~i~~~~ls 162 (162)
T PF13177_consen 154 QVIRFRPLS 162 (162)
T ss_dssp EEEEE----
T ss_pred eEEecCCCC
Confidence 777777764
No 73
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.32 E-value=1.2e-06 Score=72.28 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=65.7
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeC
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDD 194 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDd 194 (246)
....+.|+|+.|+|||.|.+++++.......-..++|++. .++...+...+..... +. .-=+|+|||
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDD 105 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRDGEIEEFKDRLR-SADLLIIDD 105 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEET
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHcccchhhhhhhh-cCCEEEEec
Confidence 4456889999999999999999995432223335667754 3444444444332211 12 344899999
Q ss_pred CCCCCc-cCHHH-HHHhhcCC-CCCcEEEEecCC---------hhHHhhcCCCceEeCCCCCC
Q 045522 195 VWDGDY-IKWKP-FYHCLKNG-LHESKILVTTRK---------GSVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 195 v~~~~~-~~~~~-l~~~l~~~-~~gs~IliTtR~---------~~va~~~~~~~~~~l~~L~~ 245 (246)
++.... ..|.+ +...+... ..|.+||+|+.. +.+.+.+...-+++++++++
T Consensus 106 i~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 106 IQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred chhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 976421 22333 33333211 346689999854 23444455566677766653
No 74
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=9.5e-06 Score=74.84 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=89.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc---cc---------------cc-CeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV---KR---------------KF-DKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~---------------~F-~~~ 155 (246)
.+++|-+...+.|...+..+ .-..++.++|+.|+||||+|+.+.+..-- .+ .+ ..+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46999998888888888543 22346689999999999999977653210 00 01 123
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~ 233 (246)
+.++.........+. +++..... .+..+++-++|+|+++.......+.|+..+......+.+|++|.+. .+...+ .
T Consensus 89 ~eldaas~~gId~IR-elie~~~~-~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~S 166 (535)
T PRK08451 89 IEMDAASNRGIDDIR-ELIEQTKY-KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILS 166 (535)
T ss_pred EEeccccccCHHHHH-HHHHHHhh-CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHh
Confidence 344433333344433 33333221 1234577899999998877667788888888766677777666553 222222 2
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+++.
T Consensus 167 Rc~~~~F~~Ls~ 178 (535)
T PRK08451 167 RTQHFRFKQIPQ 178 (535)
T ss_pred hceeEEcCCCCH
Confidence 256777777764
No 75
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.31 E-value=1.1e-05 Score=76.54 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=85.5
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC-CCCHHHHHHH
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD-TFDEFRVAKA 172 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~ 172 (246)
..+.+-|. .+++.|... .+.+.+.|..|+|.|||||+-.... . ...-..+.|+++++ +.++..+..-
T Consensus 18 ~~~~v~R~----rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccH----HHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHH
Confidence 34455555 455555433 4679999999999999999988875 1 12335799999865 5678888888
Q ss_pred HHHHccCCCC------------------------------CCCCeEEEEEeCCCCCCccCHHH-HHHhhcCCCCCcEEEE
Q 045522 173 MVEALDGHES------------------------------RLGKRFLLVLDDVWDGDYIKWKP-FYHCLKNGLHESKILV 221 (246)
Q Consensus 173 i~~~~~~~~~------------------------------~~~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~Ili 221 (246)
++.++..-.+ --.++..+||||.+......... +...+.+...+-.+++
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 8887763221 22467899999987654344444 5556666677889999
Q ss_pred ecCCh
Q 045522 222 TTRKG 226 (246)
Q Consensus 222 TtR~~ 226 (246)
|||+.
T Consensus 166 ~SR~r 170 (894)
T COG2909 166 TSRSR 170 (894)
T ss_pred EeccC
Confidence 99985
No 76
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=4.7e-06 Score=78.08 Aligned_cols=143 Identities=11% Similarity=0.153 Sum_probs=87.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-------------------ccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-------------------KFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 155 (246)
.+++|.+...+.|.+.+..+. -...+.++|+.|+||||+|+.+.+..--.. .+..+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 469999999999988885432 235678999999999999988876421110 01112
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~~~va~~~-~ 233 (246)
+.++......+.. ++++...+... +..+++-++|+|+++.......+.|...+......+.+|+ ||....+...+ .
T Consensus 91 ~eid~~s~~~v~~-ir~l~~~~~~~-p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S 168 (576)
T PRK14965 91 FEIDGASNTGVDD-IRELRENVKYL-PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS 168 (576)
T ss_pred eeeeccCccCHHH-HHHHHHHHHhc-cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH
Confidence 2333333334433 33444443221 2456777899999988765667888888887656666554 55445554433 2
Q ss_pred CCceEeCCCCC
Q 045522 234 STDIISVKELT 244 (246)
Q Consensus 234 ~~~~~~l~~L~ 244 (246)
....+++.+++
T Consensus 169 Rc~~~~f~~l~ 179 (576)
T PRK14965 169 RCQRFDFRRIP 179 (576)
T ss_pred hhhhhhcCCCC
Confidence 24555565554
No 77
>PRK06620 hypothetical protein; Validated
Probab=98.30 E-value=2.1e-06 Score=70.54 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=55.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIK 202 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~ 202 (246)
+.+.|+|++|+|||+|++.+.+... . .++. ...... .. . ...-++++||++....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~~----~~---------~-~~~d~lliDdi~~~~~-- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFNE----EI---------L-EKYNAFIIEDIENWQE-- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhch----hH---------H-hcCCEEEEeccccchH--
Confidence 6789999999999999999877432 1 1221 110000 01 1 1234789999964311
Q ss_pred HHHHHHhhcC-CCCCcEEEEecCCh-------hHHhhcCCCceEeCCCCCC
Q 045522 203 WKPFYHCLKN-GLHESKILVTTRKG-------SVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 203 ~~~l~~~l~~-~~~gs~IliTtR~~-------~va~~~~~~~~~~l~~L~~ 245 (246)
..+...+.. ...|..||+|++.. .+.+.+...-+++++++++
T Consensus 100 -~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~ 149 (214)
T PRK06620 100 -PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDD 149 (214)
T ss_pred -HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCH
Confidence 123332211 13466899998742 3444455566788887764
No 78
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.1e-05 Score=71.43 Aligned_cols=144 Identities=14% Similarity=0.122 Sum_probs=91.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc------------------------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR------------------------ 150 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------ 150 (246)
.+++|.++..+.+.+.+..+. -...+.++|+.|+||+|+|..+.+..--..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 579999999999988886532 234688999999999999976654321000
Q ss_pred -----ccCeEEEEEe---c------CCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCC
Q 045522 151 -----KFDKILWVCV---S------DTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHE 216 (246)
Q Consensus 151 -----~F~~~~wv~~---~------~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 216 (246)
...-..|+.- . ....+.+ .+.+.+.+... ...++..++|+|+++..+......|...+.....+
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~-~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLT-AAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcC-cccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 0111233321 1 1122333 33444444332 24567789999999988777788888888876666
Q ss_pred cEEEEecCCh-hHHhhc-CCCceEeCCCCCC
Q 045522 217 SKILVTTRKG-SVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 217 s~IliTtR~~-~va~~~-~~~~~~~l~~L~~ 245 (246)
+.+|++|.+. .+...+ .....+.+.+|+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~ 202 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAP 202 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCH
Confidence 7677766654 443333 3367888888864
No 79
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.29 E-value=3.7e-06 Score=69.57 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=77.0
Q ss_pred cCCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHH
Q 045522 91 LIDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 91 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 170 (246)
.+.-.+++|.|...+.|++--..=- ......-+.+||..|+|||+|++++.+...-+. -..+-|.-.+-.++..++
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELL 98 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHH
Confidence 3444679999998888766321110 113456778899999999999999988443222 233333333334454444
Q ss_pred HHHHHHccCCCCCCCCeEEEEEeCCCCC-CccCHHHHHHhhcCC----CCCcEEEEecCChhHH
Q 045522 171 KAMVEALDGHESRLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNG----LHESKILVTTRKGSVT 229 (246)
Q Consensus 171 ~~i~~~~~~~~~~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~----~~gs~IliTtR~~~va 229 (246)
..+- ....+|+|++||+.-+ ....+..|+..|..+ ..+..|..||...++.
T Consensus 99 ~~l~--------~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 99 DLLR--------DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred HHHh--------cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 4332 2347999999998543 235578888877643 2334555565544443
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=9.7e-06 Score=74.37 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=87.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-------------------ccccCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-------------------KRKFDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 155 (246)
.+++|.+...+.+.+.+.... -...+.++|+.|+||||+|+.+.....- ...|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 368999999999988885532 2346778999999999999887653210 0112234
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec-CChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT-RKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt-R~~~va~~~-~ 233 (246)
++++.+....... .+.+.+.+.. .+..+++-++|+|+++.......+.|...+......+.+|++| +...+...+ .
T Consensus 91 ~eidaas~~gvd~-ir~I~~~~~~-~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~S 168 (486)
T PRK14953 91 IEIDAASNRGIDD-IRALRDAVSY-TPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS 168 (486)
T ss_pred EEEeCccCCCHHH-HHHHHHHHHh-CcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHH
Confidence 4454444333332 2333333321 2245678899999998775556677888887665556555544 433443322 2
Q ss_pred CCceEeCCCCC
Q 045522 234 STDIISVKELT 244 (246)
Q Consensus 234 ~~~~~~l~~L~ 244 (246)
....+++.+++
T Consensus 169 Rc~~i~f~~ls 179 (486)
T PRK14953 169 RCQRFIFSKPT 179 (486)
T ss_pred hceEEEcCCCC
Confidence 24567777765
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.27 E-value=4.6e-06 Score=81.33 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=61.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc---ccc-cCeEEE-EEecC-------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV---KRK-FDKILW-VCVSD------- 162 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~-F~~~~w-v~~~~------- 162 (246)
..++||+++++++++.|.... ..-+.++|++|+||||||+.++..... ... ....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 468999999999999986643 345569999999999999998874211 111 123333 43332
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 163 TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
.-....-++.++..+.. .+++.+|++|+++..
T Consensus 261 ~ge~e~~lk~ii~e~~~----~~~~~ILfIDEih~l 292 (852)
T TIGR03345 261 KGEFENRLKSVIDEVKA----SPQPIILFIDEAHTL 292 (852)
T ss_pred chHHHHHHHHHHHHHHh----cCCCeEEEEeChHHh
Confidence 11233455556665532 246899999999653
No 82
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.1e-05 Score=71.06 Aligned_cols=146 Identities=18% Similarity=0.180 Sum_probs=89.3
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-----cc--c-----Ce------
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK-----RK--F-----DK------ 154 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~--F-----~~------ 154 (246)
....++|.++..+.+...+..+. -...+.|+|+.|+||||+|+.+.+..--. .. + .+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 33579999999999999885432 23578899999999999998776532110 00 0 00
Q ss_pred -------EEEEEec---------CCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcE
Q 045522 155 -------ILWVCVS---------DTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESK 218 (246)
Q Consensus 155 -------~~wv~~~---------~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 218 (246)
..++... ....+.. ++.+.+.+... ...+++.++|+|+++..+....+.|...+......+.
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~-~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQT-SGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhc-cccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 1222211 1112233 23444443332 2456778999999998876777888888876555555
Q ss_pred E-EEecCChhHHhhcC-CCceEeCCCCCC
Q 045522 219 I-LVTTRKGSVTSMMG-STDIISVKELTK 245 (246)
Q Consensus 219 I-liTtR~~~va~~~~-~~~~~~l~~L~~ 245 (246)
+ ++|++...+...+. ....+++.+++.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~ 202 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDD 202 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCH
Confidence 4 44444444433332 257888888874
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=9.3e-06 Score=77.08 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=89.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc----------------cCeEEEE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK----------------FDKILWV 158 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------F~~~~wv 158 (246)
.+++|.+...+.|...+..+. -...+.++|+.|+||||+|+.++...--... ...++++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 468999999999998886532 2456788999999999999888653211000 0112233
Q ss_pred EecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcE-EEEecCChhHHhhc-CCCc
Q 045522 159 CVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESK-ILVTTRKGSVTSMM-GSTD 236 (246)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-IliTtR~~~va~~~-~~~~ 236 (246)
.......... ++.+...+.. .+..+++.++|+|+++......+..|...+......+. |++|+....+...+ ....
T Consensus 93 daasn~~vd~-IReLie~~~~-~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 93 DAASNNGVDE-IRELIENVKN-LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred eccccCCHHH-HHHHHHHHHh-chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence 3222223332 3444444332 12456778999999988765678888888876655555 44555555554433 3356
Q ss_pred eEeCCCCCC
Q 045522 237 IISVKELTK 245 (246)
Q Consensus 237 ~~~l~~L~~ 245 (246)
.+++.+++.
T Consensus 171 ~ieF~~L~~ 179 (725)
T PRK07133 171 RFNFRRISE 179 (725)
T ss_pred eEEccCCCH
Confidence 788887753
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.25 E-value=7.9e-06 Score=69.10 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=33.9
Q ss_pred ccccccchHHHHHHHhhC---------CCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 96 EICGRVDEKNELLSKLLC---------ESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++|.++.++++.+.... ..-...+....+.++|++|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 478888877766433211 11012244567889999999999999998764
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.25 E-value=6e-06 Score=79.60 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=60.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccc---ccccc-CeEEE-EEecCC------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDE---VKRKF-DKILW-VCVSDT------ 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~w-v~~~~~------ 163 (246)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ ...+| ++++.-
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~ 255 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY 255 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc
Confidence 469999999999999886543 34567999999999999999887431 11112 33444 332211
Q ss_pred -CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 -FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 -~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
-..++-++.+++.+.. .++.+|++|+++.
T Consensus 256 ~g~~e~~l~~i~~~~~~-----~~~~ILfiDEih~ 285 (731)
T TIGR02639 256 RGDFEERLKAVVSEIEK-----EPNAILFIDEIHT 285 (731)
T ss_pred cchHHHHHHHHHHHHhc-----cCCeEEEEecHHH
Confidence 1233455566665432 2578999999973
No 86
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.4e-05 Score=74.51 Aligned_cols=143 Identities=10% Similarity=0.073 Sum_probs=89.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc--------------------cccCe
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK--------------------RKFDK 154 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 154 (246)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+..--. .+++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d- 89 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD- 89 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-
Confidence 469999999999999886532 24578899999999999999887743211 1222
Q ss_pred EEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecC-ChhHHhhc-
Q 045522 155 ILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTR-KGSVTSMM- 232 (246)
Q Consensus 155 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR-~~~va~~~- 232 (246)
++++..........+. ++.+.+.. .+..+++-++|+|+++......++.|...+......+.+|++|. ...+...+
T Consensus 90 v~~idgas~~~vddIr-~l~e~~~~-~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 90 VIEIDGASNTSVQDVR-QIKEEIMF-PPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred eEEecCcccCCHHHHH-HHHHHHHh-chhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 2334333333444433 33333221 11456777999999988765667888888887666676665553 33443332
Q ss_pred CCCceEeCCCCCC
Q 045522 233 GSTDIISVKELTK 245 (246)
Q Consensus 233 ~~~~~~~l~~L~~ 245 (246)
.....+++.+++.
T Consensus 168 SRc~~~~f~~l~~ 180 (563)
T PRK06647 168 SRCQHFNFRLLSL 180 (563)
T ss_pred HhceEEEecCCCH
Confidence 2245677776653
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=8.1e-06 Score=74.29 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=85.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc---------------------cccC
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK---------------------RKFD 153 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 153 (246)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 469999999999888885432 23568889999999999998876532111 1122
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecC-ChhHHhhc
Q 045522 154 KILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTR-KGSVTSMM 232 (246)
Q Consensus 154 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR-~~~va~~~ 232 (246)
.+++..........+ +.+.+.+... +..+++-++|+|+++.......+.|..++......+.+|++|. ...+...+
T Consensus 92 -~~~i~g~~~~gid~i-r~i~~~l~~~-~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI 168 (451)
T PRK06305 92 -VLEIDGASHRGIEDI-RQINETVLFT-PSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTI 168 (451)
T ss_pred -eEEeeccccCCHHHH-HHHHHHHHhh-hhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHH
Confidence 223332222233332 2333333211 1345677899999977654556778888877655666666653 33333222
Q ss_pred -CCCceEeCCCCCC
Q 045522 233 -GSTDIISVKELTK 245 (246)
Q Consensus 233 -~~~~~~~l~~L~~ 245 (246)
.....+++.+++.
T Consensus 169 ~sRc~~v~f~~l~~ 182 (451)
T PRK06305 169 LSRCQKMHLKRIPE 182 (451)
T ss_pred HHhceEEeCCCCCH
Confidence 2256677777753
No 88
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.5e-05 Score=74.98 Aligned_cols=143 Identities=12% Similarity=0.158 Sum_probs=87.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc---c-----------------Ce
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK---F-----------------DK 154 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-----------------~~ 154 (246)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-... + ..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 469999999999888885432 2356789999999999999988764311100 0 11
Q ss_pred EEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-
Q 045522 155 ILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM- 232 (246)
Q Consensus 155 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~- 232 (246)
++.++.+....... ++++.+.+... +..+++.++|||+++.......+.|...+......+.+|+++.+ ..+...+
T Consensus 91 ~~~i~~~~~~~vd~-ir~ii~~~~~~-p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 91 VIEMDAASHTSVDD-AREIIERVQFR-PALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred EEEEeccccCCHHH-HHHHHHHHhhC-cccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 23333333344433 34455544322 23456789999999877555677788888776566666665533 3333322
Q ss_pred CCCceEeCCCCC
Q 045522 233 GSTDIISVKELT 244 (246)
Q Consensus 233 ~~~~~~~l~~L~ 244 (246)
.....+.+..++
T Consensus 169 SR~~~i~f~~l~ 180 (585)
T PRK14950 169 SRCQRFDFHRHS 180 (585)
T ss_pred hccceeeCCCCC
Confidence 224556665554
No 89
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.22 E-value=1.9e-06 Score=73.04 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=88.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEE-EEecCCCCHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILW-VCVSDTFDEFRVAKAM 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~i 173 (246)
.+++|.+..+..|.+.+... ..+....+||+|.|||+-|..+....--.+.|.+++. .+++.+....-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 46899999999999988763 3688999999999999999887774333445654443 4454443322111111
Q ss_pred --HHHcc----CCCCCCCCe-EEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCChhHHhhcCC-CceEeCCCCC
Q 045522 174 --VEALD----GHESRLGKR-FLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRKGSVTSMMGS-TDIISVKELT 244 (246)
Q Consensus 174 --~~~~~----~~~~~~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~~~va~~~~~-~~~~~l~~L~ 244 (246)
...+. ....-.... ..+|||+++....+.|..|+..+.+.+..++.++ |+--..+...+.. ...|+.++|.
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 00110 111112223 5899999999888899999999988767777544 4433333332221 3445555554
Q ss_pred C
Q 045522 245 K 245 (246)
Q Consensus 245 ~ 245 (246)
+
T Consensus 190 d 190 (346)
T KOG0989|consen 190 D 190 (346)
T ss_pred h
Confidence 3
No 90
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.21 E-value=9.2e-06 Score=70.78 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=78.0
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 172 (246)
-++.+.+|+..++.+...+...+. .-...|.|+|..|+|||.+.+.+.+.. -..-+|+++-+.++..-++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHH
Confidence 356899999999999998876542 345667999999999999999999854 225689999999999999999
Q ss_pred HHHHcc-CCCC-------------------------CCCCeEEEEEeCCCCC
Q 045522 173 MVEALD-GHES-------------------------RLGKRFLLVLDDVWDG 198 (246)
Q Consensus 173 i~~~~~-~~~~-------------------------~~~kr~LlVlDdv~~~ 198 (246)
|+.... .+.. ..++.++||||+++..
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence 999884 2211 2356899999999764
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.21 E-value=1.9e-06 Score=77.06 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=55.7
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
.++.|+++.++++.+.+...-. -+-...+-|.++|++|+|||++|+.+++. ....| +.+..+.-.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~---i~v~~~~l~~~~ 205 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF---IRVVGSELVQKF 205 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCE---EEeehHHHhHhh
Confidence 3577999999998876532110 01133467899999999999999999983 33332 112221110
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.....+..++.... .....+|+||+++.
T Consensus 206 ~g~~~~~i~~~f~~a~-----~~~p~IlfiDEiD~ 235 (389)
T PRK03992 206 IGEGARLVRELFELAR-----EKAPSIIFIDEIDA 235 (389)
T ss_pred ccchHHHHHHHHHHHH-----hcCCeEEEEechhh
Confidence 12233444444332 23567999999975
No 92
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5e-07 Score=84.05 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=63.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHH---H
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVA---K 171 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~---~ 171 (246)
.+.+|.++..++|++.|--.......+-+++.++||+|+|||+|++.++. .....|-. ++++.-.+..++- +
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhccccc
Confidence 47899999999999988432211224458999999999999999999998 55555522 2333333332221 1
Q ss_pred HHHHHccCCC-----CCCCCeEEEEEeCCCCC
Q 045522 172 AMVEALDGHE-----SRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 172 ~i~~~~~~~~-----~~~~kr~LlVlDdv~~~ 198 (246)
..+.++-+.. ....++.+++||.++..
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm 429 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKM 429 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhc
Confidence 1111111100 05678999999999764
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.1e-05 Score=74.24 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=86.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc---------------------cC
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK---------------------FD 153 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------F~ 153 (246)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.++....-... ..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 468999999998888886532 2356889999999999999988764321100 00
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecC-ChhHHhhc
Q 045522 154 KILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTR-KGSVTSMM 232 (246)
Q Consensus 154 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR-~~~va~~~ 232 (246)
.++.+.......+. -+++++..+.. .+..+++-++|+|+++......++.|+..+......+.+|++|. ...+...+
T Consensus 91 D~~ei~~~~~~~vd-~IReii~~a~~-~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 91 DVIEIDAASNTGVD-NIRELIERAQF-APVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred cEEEEeccccCCHH-HHHHHHHHHhh-ChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 12233333233333 33445554432 22445677999999988765678888888887655565555443 33343332
Q ss_pred -CCCceEeCCCCC
Q 045522 233 -GSTDIISVKELT 244 (246)
Q Consensus 233 -~~~~~~~l~~L~ 244 (246)
.....+++..++
T Consensus 169 rSRc~~~~f~~l~ 181 (620)
T PRK14948 169 ISRCQRFDFRRIP 181 (620)
T ss_pred HhheeEEEecCCC
Confidence 224555555543
No 94
>PRK08181 transposase; Validated
Probab=98.18 E-value=3.5e-06 Score=71.48 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=54.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCCeEEEEEeCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-----RLGKRFLLVLDDVWD 197 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~kr~LlVlDdv~~ 197 (246)
.-+.++|++|+|||.||..+.+.. ......++|+++ .+++..+......... .-.+--||||||+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAY 178 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccc
Confidence 458999999999999999998733 333345566654 3344433222111100 012345999999976
Q ss_pred CCccCHH--HHHHhhcCCCCCcEEEEecCC
Q 045522 198 GDYIKWK--PFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 198 ~~~~~~~--~l~~~l~~~~~gs~IliTtR~ 225 (246)
.....+. .|...+.....+..+||||..
T Consensus 179 ~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 179 VTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 5333332 345544432112358888876
No 95
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.16 E-value=2.2e-05 Score=70.42 Aligned_cols=110 Identities=21% Similarity=0.359 Sum_probs=70.3
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccC
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIK 202 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~ 202 (246)
++.|.|+.++|||||++.+... ..+. .++++..+. .+..++ .+.+......... ++.+|+||.|... .+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~~~~~~~~~~~--~~~yifLDEIq~v--~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDLLRAYIELKER--EKSYIFLDEIQNV--PD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHHHHHHHHhhcc--CCceEEEecccCc--hh
Confidence 9999999999999999766662 2222 556554332 222222 2222222111111 7889999999998 78
Q ss_pred HHHHHHhhcCCCCCcEEEEecCChhH-----Hhhc-CCCceEeCCCCC
Q 045522 203 WKPFYHCLKNGLHESKILVTTRKGSV-----TSMM-GSTDIISVKELT 244 (246)
Q Consensus 203 ~~~l~~~l~~~~~gs~IliTtR~~~v-----a~~~-~~~~~~~l~~L~ 244 (246)
|......+.+..+. +|++|+-+..+ +..+ |....+++-||+
T Consensus 109 W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 109 WERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred HHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 99988888877665 88888877533 2322 336667777776
No 96
>PRK12377 putative replication protein; Provisional
Probab=98.16 E-value=6e-06 Score=69.20 Aligned_cols=95 Identities=25% Similarity=0.205 Sum_probs=55.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDDVW 196 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDdv~ 196 (246)
..+.++|++|+|||+||..+.+.. ......++++++. +++..+-........ .-.+--||||||+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg 173 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIG 173 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence 578999999999999999999944 3344456777654 233333222211100 11355699999996
Q ss_pred CCCccCHHH--HHHhhcCC-CCCcEEEEecCC
Q 045522 197 DGDYIKWKP--FYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 197 ~~~~~~~~~--l~~~l~~~-~~gs~IliTtR~ 225 (246)
......|.. |...+... .+.-.+||||..
T Consensus 174 ~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 174 IQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 553344543 44444432 222346777763
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.7e-05 Score=71.84 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=87.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc--------------------cccCe
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK--------------------RKFDK 154 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 154 (246)
.+++|.+...+.|.+.+..+. -...+.++|+.|+||||+|+.+....--. .++ .
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~-d 89 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLM-D 89 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCC-C
Confidence 479999999999999886543 23567789999999999998876532110 112 2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEE-ecCChhHHhhc-
Q 045522 155 ILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILV-TTRKGSVTSMM- 232 (246)
Q Consensus 155 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TtR~~~va~~~- 232 (246)
++.++......... ++++...+.. .+..++..++|+|+++......+..|...+......+.+|+ ||....+...+
T Consensus 90 v~eidaas~~~vd~-ir~i~~~v~~-~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 90 VIEIDAASNNGVDE-IRDIRDKVKY-APSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred eEEeeccccCCHHH-HHHHHHHHhh-CcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 33444443334432 3334444332 12456788999999987765667888888876655555554 44444443332
Q ss_pred CCCceEeCCCCC
Q 045522 233 GSTDIISVKELT 244 (246)
Q Consensus 233 ~~~~~~~l~~L~ 244 (246)
.....+.+.+++
T Consensus 168 SRc~~~~f~~~~ 179 (559)
T PRK05563 168 SRCQRFDFKRIS 179 (559)
T ss_pred hHheEEecCCCC
Confidence 224556665554
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=1e-05 Score=73.62 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=65.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-------CCCCeEEEEEeC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-------RLGKRFLLVLDD 194 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-------~~~kr~LlVlDd 194 (246)
...+.|+|..|+|||+|++.+.+.......-..+++++. ..+...+...+..... .-...-+|||||
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDD 214 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDD 214 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEec
Confidence 456899999999999999999884322222234556654 2344444443332100 012344899999
Q ss_pred CCCCCc-cCH-HHHHHhhcCC-CCCcEEEEecCC---------hhHHhhcCCCceEeCCCCCC
Q 045522 195 VWDGDY-IKW-KPFYHCLKNG-LHESKILVTTRK---------GSVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 195 v~~~~~-~~~-~~l~~~l~~~-~~gs~IliTtR~---------~~va~~~~~~~~~~l~~L~~ 245 (246)
+..... ..+ +.+...+... ..|..||+||.. +.+.+.+...-++.+++++.
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~ 277 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDN 277 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCH
Confidence 976421 122 3344444321 334568888654 23334444466667777653
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=8.9e-06 Score=73.86 Aligned_cols=116 Identities=21% Similarity=0.194 Sum_probs=64.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCCeEEEEEeCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-----RLGKRFLLVLDDVW 196 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~kr~LlVlDdv~ 196 (246)
...+.|+|+.|+|||+|++.+.+.. ......+++++.. .+...+...+..... .-...-+|++||+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~~------~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRSE------LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIE 212 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeHH------HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchh
Confidence 4578899999999999999999843 3233455666532 233333333322110 11234589999997
Q ss_pred CCCccC--HHHHHHhhcCC-CCCcEEEEecCCh---------hHHhhcCCCceEeCCCCCC
Q 045522 197 DGDYIK--WKPFYHCLKNG-LHESKILVTTRKG---------SVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 197 ~~~~~~--~~~l~~~l~~~-~~gs~IliTtR~~---------~va~~~~~~~~~~l~~L~~ 245 (246)
...... .+.+...+... ..|..||+||... .+.+.+.....+++.+++.
T Consensus 213 ~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~ 273 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTK 273 (445)
T ss_pred hhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCH
Confidence 642111 23344333211 2345688887542 2333344456777777653
No 100
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=2.2e-05 Score=68.67 Aligned_cols=142 Identities=9% Similarity=0.103 Sum_probs=87.2
Q ss_pred cccc-ccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc--------------------ccCe
Q 045522 96 EICG-RVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR--------------------KFDK 154 (246)
Q Consensus 96 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~ 154 (246)
.++| .+..++.+...+..+ .-.....++|+.|+||||+|+.+.+..--.+ |-+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD- 79 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD- 79 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC-
Confidence 4566 556667777766432 2345778999999999999987755321111 112
Q ss_pred EEEEEe-cCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc
Q 045522 155 ILWVCV-SDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM 232 (246)
Q Consensus 155 ~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~ 232 (246)
..++.. +.......+ +++.+.+... +..+++-++|+|+++.......+.|+..+.....++.+|++|.+. .+...+
T Consensus 80 ~~~i~~~~~~i~id~i-r~l~~~~~~~-~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 80 VHLVAPDGQSIKKDQI-RYLKEEFSKS-GVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred EEEeccccccCCHHHH-HHHHHHHhhC-CcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 222322 222333333 3344444322 245677889999998876667788999998877788777777553 343333
Q ss_pred -CCCceEeCCCCCC
Q 045522 233 -GSTDIISVKELTK 245 (246)
Q Consensus 233 -~~~~~~~l~~L~~ 245 (246)
.....+++.+++.
T Consensus 158 rSRc~~i~~~~~~~ 171 (329)
T PRK08058 158 LSRCQVVEFRPLPP 171 (329)
T ss_pred HhhceeeeCCCCCH
Confidence 2367788877764
No 101
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.10 E-value=3e-05 Score=67.19 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=90.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-------------------ccCeEE
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-------------------KFDKIL 156 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 156 (246)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...-.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 45677778888888887443 1223699999999999999988877432111 124556
Q ss_pred EEEecCCCC---HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc
Q 045522 157 WVCVSDTFD---EFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM 232 (246)
Q Consensus 157 wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~ 232 (246)
.++.+.... ..+.++.+.+...... ..++.-+++||+++....+.-..++..+......+.+|++|.. ..+...+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~-~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI 156 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP-LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTI 156 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC-CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchh
Confidence 666666555 3455555555443321 2468889999999887655667777778777777888888773 3333333
Q ss_pred CC-CceEeCC
Q 045522 233 GS-TDIISVK 241 (246)
Q Consensus 233 ~~-~~~~~l~ 241 (246)
.. ...+++.
T Consensus 157 ~SRc~~i~f~ 166 (325)
T COG0470 157 RSRCQRIRFK 166 (325)
T ss_pred hhcceeeecC
Confidence 22 4444444
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.09 E-value=1.7e-05 Score=71.30 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=53.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDDV 195 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDdv 195 (246)
...+.|+|++|+|||+|++.+++....+..-..++|++.. .+...+...+..... +. ..-+|+|||+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi 208 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDI 208 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehh
Confidence 4568899999999999999999844322112356666543 223333333221110 11 2338999999
Q ss_pred CCCCcc-CH-HHHHHhhcCC-CCCcEEEEecCC
Q 045522 196 WDGDYI-KW-KPFYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 196 ~~~~~~-~~-~~l~~~l~~~-~~gs~IliTtR~ 225 (246)
+..... .+ ..+...+... ..+..+|+||..
T Consensus 209 ~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 209 QFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 764211 11 2244333211 234567777754
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.08 E-value=9.3e-06 Score=79.22 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=59.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccc---ccccc-CeEEE-EEecC-----C-
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDE---VKRKF-DKILW-VCVSD-----T- 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~w-v~~~~-----~- 163 (246)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+| ++++. .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~ 252 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY 252 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC
Confidence 468999999999999996543 23556999999999999998877431 11111 23444 33221 1
Q ss_pred -CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 164 -FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 164 -~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
-..+.-++.+++.+.. .++.+|++|+++
T Consensus 253 ~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih 281 (821)
T CHL00095 253 RGEFEERLKRIFDEIQE-----NNNIILVIDEVH 281 (821)
T ss_pred ccHHHHHHHHHHHHHHh-----cCCeEEEEecHH
Confidence 1234455566665532 367899999995
No 104
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.08 E-value=3.4e-05 Score=57.38 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=27.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
..+.|+|++|+||||+++.+..... .....+++++.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEE
Confidence 5789999999999999999988432 2223456665443
No 105
>PRK06526 transposase; Provisional
Probab=98.08 E-value=5.6e-06 Score=69.73 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=50.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCCeEEEEEeCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-----RLGKRFLLVLDDVWD 197 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~kr~LlVlDdv~~ 197 (246)
.-+.|+|++|+|||+||..+...... ..+ .+.|++ ..+++..+......... .-.+.-||||||+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~t------~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFAT------AAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhhh------HHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEccccc
Confidence 46899999999999999998774322 122 334432 23344433322111100 012345899999976
Q ss_pred CCccCHH--HHHHhhcCC-CCCcEEEEecCC
Q 045522 198 GDYIKWK--PFYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 198 ~~~~~~~--~l~~~l~~~-~~gs~IliTtR~ 225 (246)
.....+. .+...+... ..++ +|+||..
T Consensus 171 ~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 171 IPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 5322222 244444322 2344 7888766
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=3.1e-05 Score=72.30 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=65.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC--C---CCCeEEEEEeCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES--R---LGKRFLLVLDDVW 196 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~---~~kr~LlVlDdv~ 196 (246)
...+.|+|..|+|||.|++.+++.......-..++|++.. .+...+...+..... + -.+--+|+|||+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq 387 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQ 387 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhc
Confidence 3458999999999999999999843221122356677543 333333333221110 0 0122389999997
Q ss_pred CCCc-cCHH-HHHHhhcCC-CCCcEEEEecCC---------hhHHhhcCCCceEeCCCCCC
Q 045522 197 DGDY-IKWK-PFYHCLKNG-LHESKILVTTRK---------GSVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 197 ~~~~-~~~~-~l~~~l~~~-~~gs~IliTtR~---------~~va~~~~~~~~~~l~~L~~ 245 (246)
.... ..|. .|...+... ..|..|||||.. ..+.+.+...-.++|+..+.
T Consensus 388 ~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 6422 2232 244433211 234568888875 23444455566777776653
No 107
>CHL00181 cbbX CbbX; Provisional
Probab=98.07 E-value=2.7e-05 Score=66.76 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=69.4
Q ss_pred ccccccchHHHHHHHh---hC-----CCC-CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 96 EICGRVDEKNELLSKL---LC-----ESS-EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L---~~-----~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
.++|.++.++++.+.. .- ... ........+.++|++|+||||+|+.++........-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 5778776666554432 10 000 0112234588899999999999999977421111111111333321
Q ss_pred HHHH-----------HHHHHHccCCCCCCCCeEEEEEeCCCCC---------CccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 167 FRVA-----------KAMVEALDGHESRLGKRFLLVLDDVWDG---------DYIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 167 ~~~~-----------~~i~~~~~~~~~~~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
..+. ..+++.. ..-+|+||++... .......|...+.....+..||+++...
T Consensus 100 ~~l~~~~~g~~~~~~~~~l~~a--------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~ 171 (287)
T CHL00181 100 DDLVGQYIGHTAPKTKEVLKKA--------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHHHhccchHHHHHHHHHc--------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 1111 1122221 2248999999652 1122334455555555566777777654
Q ss_pred hHHhhcC--------CCceEeCCCCCC
Q 045522 227 SVTSMMG--------STDIISVKELTK 245 (246)
Q Consensus 227 ~va~~~~--------~~~~~~l~~L~~ 245 (246)
.+...+. -...+.+++++.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 4432211 144666666653
No 108
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.06 E-value=2.3e-05 Score=74.05 Aligned_cols=46 Identities=30% Similarity=0.374 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
++++|++..++.+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999988887743 234579999999999999999998754
No 109
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.05 E-value=3.6e-06 Score=81.31 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=39.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+.+|.++.+++++++|............++.++|++|+||||+|+.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999888632211123446899999999999999999987
No 110
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=2.9e-05 Score=70.56 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=54.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDDV 195 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDdv 195 (246)
...+.|+|++|+|||+|++.+++.......-..++|++.. ++...+...+..... .....-+|+|||+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi 203 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDV 203 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcccHHHHHHHHHhcCCEEEEech
Confidence 4569999999999999999999843221111356677543 344444444432111 1123458999999
Q ss_pred CCCC-ccCH-HHHHHhhcCC-CCCcEEEEecC
Q 045522 196 WDGD-YIKW-KPFYHCLKNG-LHESKILVTTR 224 (246)
Q Consensus 196 ~~~~-~~~~-~~l~~~l~~~-~~gs~IliTtR 224 (246)
+... ...+ ..+...+... ..|..||+||.
T Consensus 204 ~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 204 QFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 7531 1112 2343333211 22446888874
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=1.3e-05 Score=78.36 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=60.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc---c--cCeEEEEEecCCC-----
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR---K--FDKILWVCVSDTF----- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~--F~~~~wv~~~~~~----- 164 (246)
..++||+.+++++++.|.... ..-+.++|++|+|||+||+.+........ . -..+++++++.-.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 469999999999999996643 34566999999999999998887421100 0 1233344443311
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
..++-++.++..+.. .+++.+|++|+++.
T Consensus 252 ~g~~e~~lk~~~~~~~~----~~~~~ILfIDEih~ 282 (857)
T PRK10865 252 RGEFEERLKGVLNDLAK----QEGNVILFIDELHT 282 (857)
T ss_pred hhhhHHHHHHHHHHHHH----cCCCeEEEEecHHH
Confidence 223345555555422 24689999999965
No 112
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.04 E-value=3e-05 Score=76.01 Aligned_cols=128 Identities=16% Similarity=0.285 Sum_probs=76.9
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
..++|.+..++.+...+..... .......++.++|++|+|||++|+.+... ....-...+.++++...+.... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-H
Confidence 4689999999999988865321 01123467889999999999999999873 2222233444555432221111 1
Q ss_pred HHHHH----ccCCC--C-----CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 172 AMVEA----LDGHE--S-----RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 172 ~i~~~----~~~~~--~-----~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
.++.. ++... . ......+|+||++.......+..|...+..+ ...+-||+||..
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 11100 00000 0 1123359999999988777788888877544 234558888775
No 113
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.04 E-value=2.4e-05 Score=71.32 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=62.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDDV 195 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDdv 195 (246)
...+.|+|++|+|||+|++.+.+....+..-..++|++... +...+...+..... +. +.-+|+|||+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi 220 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDI 220 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehh
Confidence 45689999999999999999998433221123466665432 22222222221100 11 2348999999
Q ss_pred CCCCccC--HHHHHHhhcCC-CCCcEEEEecCCh---------hHHhhcCCCceEeCCCCCC
Q 045522 196 WDGDYIK--WKPFYHCLKNG-LHESKILVTTRKG---------SVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 196 ~~~~~~~--~~~l~~~l~~~-~~gs~IliTtR~~---------~va~~~~~~~~~~l~~L~~ 245 (246)
+...... .+.+...+... ..|..+|+||... .+.+.+.....+++++.+.
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 7542111 12343333211 2244577777542 2233444455677776653
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.04 E-value=7.4e-06 Score=68.83 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=62.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+|+|.++..++|.-.+..... ....+-.+.++||+|.||||||..+++.+.+.-+ +.-+....-..-+-.++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k------~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK------ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE------ecccccccChhhHHHHH
Confidence 4799999988888776655432 4466789999999999999999999996543211 12111112222222333
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhh
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCL 210 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l 210 (246)
..+ .+.=.|++|.++......-+-|...+
T Consensus 99 t~L-------e~~DVLFIDEIHrl~~~vEE~LYpaM 127 (332)
T COG2255 99 TNL-------EEGDVLFIDEIHRLSPAVEEVLYPAM 127 (332)
T ss_pred hcC-------CcCCeEEEehhhhcChhHHHHhhhhh
Confidence 333 24557889999876433333344433
No 115
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.03 E-value=9.9e-06 Score=79.07 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=75.0
Q ss_pred CccccccchHHHHHHHhhCC---CCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC---HHH
Q 045522 95 EEICGRVDEKNELLSKLLCE---SSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD---EFR 168 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~---~~~ 168 (246)
..++|.+..++.+.+.+... -........++.++|++|+|||.||+.+.... -......+-++++...+ ...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhhhhhhcc
Confidence 46899999999998887542 11122445688999999999999998876632 11122223333332111 111
Q ss_pred HHH------------HHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 169 VAK------------AMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 169 ~~~------------~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
++. .+.+.+ .+....+|+||++...+...++.|...+..+. ..+-||+||.-
T Consensus 644 l~g~~~gyvg~~~~g~L~~~v-----~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 644 LKGSPPGYVGYGEGGVLTEAV-----RRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccCCCCCcccccccchHHHHH-----HhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 100 000111 12345699999998877677777877776552 56778888764
No 116
>PRK09183 transposase/IS protein; Provisional
Probab=98.02 E-value=1.4e-05 Score=67.53 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=50.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDDVW 196 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDdv~ 196 (246)
..+.|+|++|+|||+||..+...... .-..+.+++.. .+...+......... ...+.-++||||+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~~------~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg 174 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTAA------DLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIG 174 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeHH------HHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccc
Confidence 46779999999999999999763222 22234455432 222222111100000 11244599999997
Q ss_pred CCCccCHH--HHHHhhcCC-CCCcEEEEecCC
Q 045522 197 DGDYIKWK--PFYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 197 ~~~~~~~~--~l~~~l~~~-~~gs~IliTtR~ 225 (246)
......+. .|...+... ..++ +|+||..
T Consensus 175 ~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 175 YLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred cCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 64333333 344444322 2344 7888865
No 117
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.02 E-value=2.2e-05 Score=75.51 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=57.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-c---cCeEEEEE-ecC-----C-
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-K---FDKILWVC-VSD-----T- 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~-~~~-----~- 163 (246)
..++||+++++++++.|.... ..-+.++|++|+|||+||+.++....... . .++.+|.. .+. .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~ 259 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccch
Confidence 469999999999999887632 23446899999999999999886321111 1 24455532 111 0
Q ss_pred -CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 -FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 -~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
-+...-++.+++.+. ..++.+|+||+++.
T Consensus 260 ~Ge~e~rl~~l~~~l~-----~~~~~ILfIDEIh~ 289 (758)
T PRK11034 260 RGDFEKRFKALLKQLE-----QDTNSILFIDEIHT 289 (758)
T ss_pred hhhHHHHHHHHHHHHH-----hcCCCEEEeccHHH
Confidence 022233444444442 23567999999964
No 118
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.97 E-value=0.00021 Score=58.91 Aligned_cols=119 Identities=19% Similarity=0.184 Sum_probs=74.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|.|...+.|++--..=. ......-|.+||..|+|||+|++++.+ ......-..+-|+-.+-.++..+ +
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl~~Lp~l----~ 131 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDLATLPDL----V 131 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHHhhHHHH----H
Confidence 468998888887765321100 113456788999999999999999998 44444444444433333333333 3
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCC-CccCHHHHHHhhcCC---CCCcEEEEecCC
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNG---LHESKILVTTRK 225 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~IliTtR~ 225 (246)
+.+. ....+|+|+.||+.-+ +...++.|+..|..+ .+...++..|.+
T Consensus 132 ~~Lr----~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 132 ELLR----ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHh----cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 3332 3468999999999643 335688888888644 333445555544
No 119
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.96 E-value=3.1e-05 Score=66.95 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=67.1
Q ss_pred cccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHcc
Q 045522 99 GRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALD 178 (246)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 178 (246)
++....+...+++..-.. .....-+.|+|+.|+|||.||.++++... ..-..+.++.++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHh
Confidence 344444445555543221 12346789999999999999999999543 322345566543 33344433332
Q ss_pred CCCC-----CCCCeEEEEEeCCCCCCccCHHH--HHHhh-cCC-CCCcEEEEecCC
Q 045522 179 GHES-----RLGKRFLLVLDDVWDGDYIKWKP--FYHCL-KNG-LHESKILVTTRK 225 (246)
Q Consensus 179 ~~~~-----~~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~IliTtR~ 225 (246)
.... .-.+--||||||+..+....|.. +...+ ... ..+-..|+||.-
T Consensus 205 ~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DGSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cCcHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2110 12355699999998765566753 44433 322 234568888864
No 120
>PRK10536 hypothetical protein; Provisional
Probab=97.96 E-value=4.8e-05 Score=63.71 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=72.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE----ecCC-----CC
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC----VSDT-----FD 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~~~~-----~~ 165 (246)
..+.++......++.+|.. ...+.+.|+.|+|||+||..+..+.-....|..++-.. .++. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467788888888888843 24899999999999999988776432233455444332 1110 01
Q ss_pred H--------HHHHHHHHHHcc----------CCCC--------CCCCeE---EEEEeCCCCCCccCHHHHHHhhcCCCCC
Q 045522 166 E--------FRVAKAMVEALD----------GHES--------RLGKRF---LLVLDDVWDGDYIKWKPFYHCLKNGLHE 216 (246)
Q Consensus 166 ~--------~~~~~~i~~~~~----------~~~~--------~~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~g 216 (246)
. .-+.+.+..-++ .... .+|..+ +||+|++.+.+. .++...+...+.+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~~ 203 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCCC
Confidence 1 111111111111 0110 455544 999999988643 5555555556688
Q ss_pred cEEEEecCCh
Q 045522 217 SKILVTTRKG 226 (246)
Q Consensus 217 s~IliTtR~~ 226 (246)
|++|+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999986443
No 121
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.96 E-value=1.8e-05 Score=77.46 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=58.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc---c-cCeEE-EEEecCC------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR---K-FDKIL-WVCVSDT------ 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~-wv~~~~~------ 163 (246)
..++||++++++++..|.... ..-+.++|++|+|||+||+.+.....-.. . ....+ .++++.-
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~ 246 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY 246 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh
Confidence 459999999999999996543 24455899999999999998877421110 0 12233 3333221
Q ss_pred -CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 -FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 -~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
-....-+..++..+.. .+++.+|++|+++.
T Consensus 247 ~g~~e~~l~~~l~~~~~----~~~~~ILfIDEih~ 277 (852)
T TIGR03346 247 RGEFEERLKAVLNEVTK----SEGQIILFIDELHT 277 (852)
T ss_pred hhhHHHHHHHHHHHHHh----cCCCeEEEeccHHH
Confidence 1223344555555422 23689999999974
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.95 E-value=1.8e-05 Score=76.40 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=74.3
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC---HHH
Q 045522 95 EEICGRVDEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD---EFR 168 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~---~~~ 168 (246)
..++|.+..++.+.+.+..... .......++.++|++|+|||+||+.++... +...+.+++++..+ ...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccHHH
Confidence 4688999999988887764211 011234578899999999999999998833 22344555443221 111
Q ss_pred HHH------------HHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 169 VAK------------AMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 169 ~~~------------~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
++. .+.+.+ ......+++||+++......+..|...+..+ ...+.||+||..
T Consensus 529 lig~~~gyvg~~~~~~l~~~~-----~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAV-----RKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred HhcCCCCCcccchhhHHHHHH-----HhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 110 011111 1224569999999988767777777777543 234557778743
No 123
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=3.2e-05 Score=72.37 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=67.4
Q ss_pred CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCC--CCCeEEEEEeCC
Q 045522 118 QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESR--LGKRFLLVLDDV 195 (246)
Q Consensus 118 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~kr~LlVlDdv 195 (246)
..+.-+++.++|++|.||||||..++++.. | .++-|+.+++-+...+-..|...+.....+ .++...||+|.+
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 346678999999999999999999998442 2 567789999999888888888877666554 378889999999
Q ss_pred CCCCccCHHHHHHhh
Q 045522 196 WDGDYIKWKPFYHCL 210 (246)
Q Consensus 196 ~~~~~~~~~~l~~~l 210 (246)
+-......+.++..+
T Consensus 397 DGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 397 DGAPRAAVDVILSLV 411 (877)
T ss_pred cCCcHHHHHHHHHHH
Confidence 876533344555544
No 124
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.94 E-value=2.7e-05 Score=66.71 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=57.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccC--eEEEEEecCCCC-----HHHHHHHHHHHccCCCCCCCCeEEEEEeCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFD--KILWVCVSDTFD-----EFRVAKAMVEALDGHESRLGKRFLLVLDDV 195 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~-----~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv 195 (246)
..+.++|++|+|||++|+.++.......... ..+.++.+.-.+ ...-...+++.. ..-+|+||++
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a--------~~gvL~iDEi 130 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA--------MGGVLFIDEA 130 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc--------cCcEEEEech
Confidence 3688999999999999977766322111111 222332211000 000111222221 2358999999
Q ss_pred CCC---------CccCHHHHHHhhcCCCCCcEEEEecCChhHHhhc--C------CCceEeCCCCCC
Q 045522 196 WDG---------DYIKWKPFYHCLKNGLHESKILVTTRKGSVTSMM--G------STDIISVKELTK 245 (246)
Q Consensus 196 ~~~---------~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~~--~------~~~~~~l~~L~~ 245 (246)
... .......|...+.....+.+||+++........+ . -...+++++++.
T Consensus 131 ~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 131 YYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred hhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 632 1122344556665555566777776544332211 1 045677777763
No 125
>PRK08118 topology modulation protein; Reviewed
Probab=97.94 E-value=3.9e-06 Score=66.22 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=28.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccc-cccCeEEEE
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVK-RKFDKILWV 158 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 158 (246)
-|.|+|++|+||||||+.+++..... -+|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 58899999999999999999865544 457777753
No 126
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.94 E-value=6.3e-06 Score=62.67 Aligned_cols=81 Identities=21% Similarity=0.221 Sum_probs=51.0
Q ss_pred EEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC--------CCCCeEEEEEeCCC
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES--------RLGKRFLLVLDDVW 196 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~kr~LlVlDdv~ 196 (246)
|.|+|++|+|||+||+.++... . ....-+.++...+..+++...--. ..... .-.+..++|||+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECCcc
Confidence 6799999999999999998833 1 233446778878877666432211 11111 22378999999998
Q ss_pred CCCccCHHHHHHhhc
Q 045522 197 DGDYIKWKPFYHCLK 211 (246)
Q Consensus 197 ~~~~~~~~~l~~~l~ 211 (246)
......+..|...+.
T Consensus 76 ~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 76 RAPPEVLESLLSLLE 90 (139)
T ss_dssp G--HHHHHTTHHHHS
T ss_pred cCCHHHHHHHHHHHh
Confidence 765455556666553
No 127
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.93 E-value=4.6e-05 Score=63.77 Aligned_cols=95 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC-C-------CCCCeEEEEEe
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE-S-------RLGKRFLLVLD 193 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-~-------~~~kr~LlVlD 193 (246)
...+.++|.+|+|||+||..+++... ..-..+++++++ +++..+-..+.... . +. +.-|||||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~~------~l~~~l~~~~~~~~~~~~~~l~~l~-~~dlLvID 169 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITVA------DIMSAMKDTFSNSETSEEQLLNDLS-NVDLLVID 169 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEHH------HHHHHHHHHHhhccccHHHHHHHhc-cCCEEEEe
Confidence 35788999999999999999998542 233456666542 23332222211000 0 22 34489999
Q ss_pred CCCCCCccCHHH--HHHhhcCC-CCCcEEEEecCC
Q 045522 194 DVWDGDYIKWKP--FYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 194 dv~~~~~~~~~~--l~~~l~~~-~~gs~IliTtR~ 225 (246)
|+......+|.. +...+... ...-.+||||..
T Consensus 170 Dig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 170 EIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 997765456664 33333322 222346777654
No 128
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.93 E-value=6.5e-05 Score=66.92 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=68.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccC--eEEEEEecCCCCHHHHHHHHHHHccCCCC----CCCCeEEEEEeC
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFD--KILWVCVSDTFDEFRVAKAMVEALDGHES----RLGKRFLLVLDD 194 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~kr~LlVlDd 194 (246)
....+.|||+.|.|||.|++++.+ ....... .+++++. +.....++..+..... -.-.-=++++||
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDD 183 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS------EDFTNDFVKALRDNEMEKFKEKYSLDLLLIDD 183 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH------HHHHHHHHHHHHhhhHHHHHHhhccCeeeech
Confidence 468999999999999999999999 4444554 3444432 2333333333222110 011233899999
Q ss_pred CCCCCc-cCHH-HHHHhhcCC-CCCcEEEEecCC---------hhHHhhcCCCceEeCCCCCC
Q 045522 195 VWDGDY-IKWK-PFYHCLKNG-LHESKILVTTRK---------GSVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 195 v~~~~~-~~~~-~l~~~l~~~-~~gs~IliTtR~---------~~va~~~~~~~~~~l~~L~~ 245 (246)
++.... +.|+ ++...|-.- ..|-.||+|++. +.+.+.+...-.+++.+++.
T Consensus 184 iq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred HhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 976321 2233 344444311 234489999854 35556666677788877764
No 129
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=4e-05 Score=68.45 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=83.3
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 172 (246)
.+..++||+.+++.+.+++...- +....+.+-+.|.+|.|||.+...++.+..-...-.+++++++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 44679999999999999887654 3455678999999999999999999885432222235678887766666677777
Q ss_pred HHHHc----cCCCC-------------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-CCCcEEEEe
Q 045522 173 MVEAL----DGHES-------------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-LHESKILVT 222 (246)
Q Consensus 173 i~~~~----~~~~~-------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliT 222 (246)
|...+ ..+.. ....-+|+|||.+++.....-..|...|... .+++++|+.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeee
Confidence 76666 11111 2235789999999764222222333333322 355665543
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.92 E-value=3.1e-05 Score=75.66 Aligned_cols=128 Identities=13% Similarity=0.212 Sum_probs=74.3
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
..++|.+..++.+...+..... ........+.++|+.|+|||+||+.+.+.. -..-...+-+++++..+...+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccHHH
Confidence 5689999999999887753211 112334567789999999999999887632 11112333344433221111110
Q ss_pred HHHHH----ccCCC--C----CC-CCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 172 AMVEA----LDGHE--S----RL-GKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 172 ~i~~~----~~~~~--~----~~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
++.. .+... . +. ....+++||+++......++.|...+..+ ...+-||+||..
T Consensus 587 -l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 587 -LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred -hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1100 00000 0 12 23469999999988777788888877654 245667777764
No 131
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.92 E-value=5.1e-06 Score=66.28 Aligned_cols=94 Identities=21% Similarity=0.336 Sum_probs=49.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDDVW 196 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDdv~ 196 (246)
.-+.++|++|+|||.||..+.+... ..-..+.|++. .+++..+-.. ..... .-.+--||||||+-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~--~~g~~v~f~~~------~~L~~~l~~~-~~~~~~~~~~~~l~~~dlLilDDlG 118 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAI--RKGYSVLFITA------SDLLDELKQS-RSDGSYEELLKRLKRVDLLILDDLG 118 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEH------HHHHHHHHCC-HCCTTHCHHHHHHHTSSCEEEETCT
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhc--cCCcceeEeec------Cceecccccc-ccccchhhhcCccccccEecccccc
Confidence 5699999999999999999887432 22235666654 3344333221 11111 00134589999997
Q ss_pred CCCccCHHH--HHHhhcCC-CCCcEEEEecCCh
Q 045522 197 DGDYIKWKP--FYHCLKNG-LHESKILVTTRKG 226 (246)
Q Consensus 197 ~~~~~~~~~--l~~~l~~~-~~gs~IliTtR~~ 226 (246)
......|.. +...+... .+. .+||||...
T Consensus 119 ~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 119 YEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred eeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 654333332 33333322 233 477788753
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00012 Score=63.91 Aligned_cols=123 Identities=13% Similarity=0.122 Sum_probs=76.8
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccccccc-------------------ccCeEEEEEec---CCCCHHHHHHHHHHHcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKR-------------------KFDKILWVCVS---DTFDEFRVAKAMVEALD 178 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~~~---~~~~~~~~~~~i~~~~~ 178 (246)
-...+.++|+.|+|||++|+.+....--.. ...-..|+.-. +...++.+- ++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR-~l~~~~~ 99 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR-ELVSFVV 99 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH-HHHHHHh
Confidence 345788999999999999987765421110 11223444322 233444443 3555544
Q ss_pred CCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-CCCceEeCCCCCC
Q 045522 179 GHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 179 ~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~~~~~~~l~~L~~ 245 (246)
... ..+++-++|+|+++.......+.|...+.....++.+|++|.+. .+...+ +....+.+.+++.
T Consensus 100 ~~~-~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 100 QTA-QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred hcc-ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence 332 33455566789999887778888999998876778777777664 444333 3356777777653
No 133
>PRK06921 hypothetical protein; Provisional
Probab=97.92 E-value=1.4e-05 Score=67.89 Aligned_cols=96 Identities=23% Similarity=0.369 Sum_probs=53.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccc-cCeEEEEEecCCCCHHHHHHHHHHHcc---CCCCCCCCeEEEEEeCCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRK-FDKILWVCVSDTFDEFRVAKAMVEALD---GHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~~~---~~~~~~~kr~LlVlDdv~~ 197 (246)
...+.++|+.|+|||+||..+++.. ... ...++|++..+ ++..+...+. .....-.+--||||||+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~~~------l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPFVE------GFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEHHH------HHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4678999999999999999999843 333 34567776532 2222211110 0000112345999999933
Q ss_pred -----CCccCHHH--HHHhhcCC-CCCcEEEEecCC
Q 045522 198 -----GDYIKWKP--FYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 198 -----~~~~~~~~--l~~~l~~~-~~gs~IliTtR~ 225 (246)
+...+|.. |...+... ..+..+||||..
T Consensus 189 ~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 189 PVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred ccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22234443 55444322 223457888764
No 134
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.90 E-value=4.4e-05 Score=64.63 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=58.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH--------HHc----cC----------C
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV--------EAL----DG----------H 180 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~--------~~~----~~----------~ 180 (246)
..+.|.|++|+|||+||+.+.. .... ....+++....+...++.... ..+ .. .
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 3567899999999999999987 2222 334555555555444432211 000 00 0
Q ss_pred CC---CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC----------------CCCcEEEEecCCh
Q 045522 181 ES---RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG----------------LHESKILVTTRKG 226 (246)
Q Consensus 181 ~~---~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~IliTtR~~ 226 (246)
.+ ...+...+++|++...+...+..|...+..+ .++.+||+|+...
T Consensus 97 g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 97 NRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred chHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 01 1123468999999887656666676666432 1356888888753
No 135
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.90 E-value=2.5e-05 Score=63.47 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=60.5
Q ss_pred ccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe----cCCC-----CHH---
Q 045522 100 RVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV----SDTF-----DEF--- 167 (246)
Q Consensus 100 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----~~~~-----~~~--- 167 (246)
+..+-...++.|.. ..++.+.|++|+|||.||-...-+.-....|+.++++.- +++. +..
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44555566666652 358999999999999999877765544577888887752 1111 100
Q ss_pred ----HHHHHHHHHccCCCC-----------------CCCC---eEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEec
Q 045522 168 ----RVAKAMVEALDGHES-----------------RLGK---RFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTT 223 (246)
Q Consensus 168 ----~~~~~i~~~~~~~~~-----------------~~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTt 223 (246)
.-+.+.+..+..... ++|+ +.++|+|++.+.. -.++...+...+.|||+|++-
T Consensus 77 ~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t---~~~~k~ilTR~g~~skii~~G 153 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT---PEELKMILTRIGEGSKIIITG 153 (205)
T ss_dssp -TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG-----HHHHHHHHTTB-TT-EEEEEE
T ss_pred HHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCC---HHHHHHHHcccCCCcEEEEec
Confidence 011112222111111 4454 4599999997754 345556666667899999986
Q ss_pred CChh
Q 045522 224 RKGS 227 (246)
Q Consensus 224 R~~~ 227 (246)
-..+
T Consensus 154 D~~Q 157 (205)
T PF02562_consen 154 DPSQ 157 (205)
T ss_dssp ----
T ss_pred Ccee
Confidence 5443
No 136
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.88 E-value=3.6e-05 Score=67.21 Aligned_cols=95 Identities=15% Similarity=0.286 Sum_probs=54.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHH-ccCCCC------CCCCeEEEEEeCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEA-LDGHES------RLGKRFLLVLDDV 195 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-~~~~~~------~~~kr~LlVlDdv 195 (246)
..+.++|++|+|||.||..+++.. ...-..++|+++.. ++..+... +..... .-..-=||||||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~------l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE------LIEILREIRFNNDKELEEVYDLLINCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH------HHHHHHHHHhccchhHHHHHHHhccCCEEEEecc
Confidence 569999999999999999999844 23334567776533 22222111 100000 0012348999999
Q ss_pred CCCCccCH--HHHHHhhcCC-CCCcEEEEecCC
Q 045522 196 WDGDYIKW--KPFYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 196 ~~~~~~~~--~~l~~~l~~~-~~gs~IliTtR~ 225 (246)
.......| ..|...+... ..+..+||||..
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 66543444 3355444322 234458888864
No 137
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.88 E-value=4e-05 Score=60.54 Aligned_cols=123 Identities=20% Similarity=0.171 Sum_probs=68.1
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHH
Q 045522 97 ICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEA 176 (246)
Q Consensus 97 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 176 (246)
++|....+.++.+.+..-. .....|.|+|..|+||+.+|+.+++. ....-..-+-|+++.- +...+-..++..
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhhh-hcchhhhhhhcc
Confidence 4677778888877665433 22256679999999999999999983 2222223344555532 344444444443
Q ss_pred ccCCCC----------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCCh
Q 045522 177 LDGHES----------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRKG 226 (246)
Q Consensus 177 ~~~~~~----------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~~ 226 (246)
...... -.-..=-|+||++.......-..|...+..+ ....|||.||...
T Consensus 74 ~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 222110 0112226899999887644455566666432 1246888888753
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.86 E-value=5.1e-05 Score=74.28 Aligned_cols=128 Identities=16% Similarity=0.253 Sum_probs=73.7
Q ss_pred CccccccchHHHHHHHhhCCC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
..++|.+..++.+...+.... ........++.++|+.|+|||+||+.+++.. ...-...+.++++..... ....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~~-~~~~ 644 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFMEK-HSVS 644 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhhh-hhHH
Confidence 368899999998888775421 0011233578899999999999999988732 122223445555432111 1111
Q ss_pred HHHHHc----cCCCC-------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 172 AMVEAL----DGHES-------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 172 ~i~~~~----~~~~~-------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
.++..- +.... .....-+|+||++.......+..|...+..+ ...+-||+||..
T Consensus 645 ~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 111000 00000 1112359999999887767777787777543 123447888875
No 139
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.84 E-value=0.0001 Score=62.91 Aligned_cols=131 Identities=20% Similarity=0.177 Sum_probs=84.1
Q ss_pred CCCCcccccc---chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc----ccCeEEEEEecCCC
Q 045522 92 IDEEEICGRV---DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR----KFDKILWVCVSDTF 164 (246)
Q Consensus 92 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~ 164 (246)
...+..+|.. +.++.|.++|.... ....+-+.|+|.+|.|||++++.+....-... .--.++.|.+....
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3445667744 34455555554433 36667899999999999999999876321111 11257778888999
Q ss_pred CHHHHHHHHHHHccCCCC----------------CCCCeEEEEEeCCCCC------CccCHHHHHHhhcCCCCCcEEEEe
Q 045522 165 DEFRVAKAMVEALDGHES----------------RLGKRFLLVLDDVWDG------DYIKWKPFYHCLKNGLHESKILVT 222 (246)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~----------------~~~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~IliT 222 (246)
+...+...|+.+++.+.. -.-+--+||+|++++. .+...-.+...|.+...=+-|.+-
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 999999999999988764 1223458999999762 112222333444444444556665
Q ss_pred cCC
Q 045522 223 TRK 225 (246)
Q Consensus 223 tR~ 225 (246)
|++
T Consensus 188 t~~ 190 (302)
T PF05621_consen 188 TRE 190 (302)
T ss_pred cHH
Confidence 543
No 140
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00018 Score=62.45 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=89.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-------------ccccCeEEEEEec
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-------------KRKFDKILWVCVS 161 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~~ 161 (246)
.+++|.+...+.+...+..+. -.....++|+.|+||+++|..+....-- .....-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368899999998888885532 2468999999999999999776553211 1122333454321
Q ss_pred -----CCC------------------CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcE
Q 045522 162 -----DTF------------------DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESK 218 (246)
Q Consensus 162 -----~~~------------------~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 218 (246)
... .+ +-.+.+.+.+.. .+..+++-++|+|+++.......+.|+..+.... .+.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~-~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRL-EQIREIKRFLSR-PPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred ccccccccchhhhhhccccccccccCcH-HHHHHHHHHHcc-CcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 100 11 122344443332 2355778899999998876667788888888765 445
Q ss_pred EEE-ecCChhHHhhc-CCCceEeCCCCCC
Q 045522 219 ILV-TTRKGSVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 219 Ili-TtR~~~va~~~-~~~~~~~l~~L~~ 245 (246)
+|+ |+....+...+ .....+++.++++
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~ 184 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSD 184 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCH
Confidence 554 44444444444 3377888887764
No 141
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.84 E-value=3.1e-05 Score=63.50 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=72.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.++||-++-++.+.-.-.. .+.+-+.|.||+|+||||-+..+++..--...-+.+.-++.|++....-+...|-
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 4699999888887766644 4567899999999999998887777432222336777788888877655544443
Q ss_pred HHccCCCC-CCCCeEEEEEeCCCCCCccCHHHHHHhh
Q 045522 175 EALDGHES-RLGKRFLLVLDDVWDGDYIKWKPFYHCL 210 (246)
Q Consensus 175 ~~~~~~~~-~~~kr~LlVlDdv~~~~~~~~~~l~~~l 210 (246)
.-...... -.++..++|||..++.....-..++..+
T Consensus 101 ~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtM 137 (333)
T KOG0991|consen 101 MFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 137 (333)
T ss_pred HHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHH
Confidence 22222222 2467779999999886433334454443
No 142
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.83 E-value=1.9e-05 Score=60.15 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=63.4
Q ss_pred ccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-ccccCeEEEEEecCCCCHHHHHHHHHHH
Q 045522 98 CGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-KRKFDKILWVCVSDTFDEFRVAKAMVEA 176 (246)
Q Consensus 98 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 176 (246)
||.-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|..+ .+... . .++++.
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~~ 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLEQ 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHHH
Confidence 355555666666554322 22356789999999999999998874332 2233221 12221 1 223333
Q ss_pred ccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-CCCcEEEEecCCh
Q 045522 177 LDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-LHESKILVTTRKG 226 (246)
Q Consensus 177 ~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTtR~~ 226 (246)
. +.--|+|+|++..+......|...+... ....|+|.||...
T Consensus 68 a--------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 A--------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp C--------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred c--------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 2 3445889999887666666777777643 5667999998763
No 143
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.82 E-value=1.5e-05 Score=69.85 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=42.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.+++|.++.++++++++...........+++.|+|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999866442223456899999999999999999988754
No 144
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.3e-05 Score=73.19 Aligned_cols=96 Identities=22% Similarity=0.333 Sum_probs=63.3
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH--
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK-- 171 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~-- 171 (246)
+++.+|.++.++++++++--..--+..+-.++..+||+|||||++|+.++. .....| +-++++.-.+..++-.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccc
Confidence 357899999999999987322211235668999999999999999999988 444444 1234444444433221
Q ss_pred ---------HHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 172 ---------AMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 172 ---------~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.|++.++. ....+.|+.||.|+.
T Consensus 485 RTYVGAMPGkiIq~LK~---v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKK---VKTENPLILIDEVDK 516 (906)
T ss_pred eeeeccCChHHHHHHHh---hCCCCceEEeehhhh
Confidence 12222211 456789999999975
No 145
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.81 E-value=8.1e-05 Score=72.77 Aligned_cols=47 Identities=26% Similarity=0.346 Sum_probs=39.5
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+++||+.+++.|...+..-.. ....++.+.|..|||||+|++.+..-
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 478999999999998865442 45569999999999999999999873
No 146
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.81 E-value=6.2e-05 Score=68.42 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=63.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHH-
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAM- 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i- 173 (246)
..++||++.++.+...++.+. .|.|.|++|+|||+||+.+.........|....- ... .+.+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~-~ft---tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT-RFS---TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceeeee-eec---CcHHhcCcHH
Confidence 359999999999999887654 5889999999999999999884332234431110 001 122322211
Q ss_pred HHHcc--CCCC--CCC---CeEEEEEeCCCCCCccCHHHHHHhhc
Q 045522 174 VEALD--GHES--RLG---KRFLLVLDDVWDGDYIKWKPFYHCLK 211 (246)
Q Consensus 174 ~~~~~--~~~~--~~~---kr~LlVlDdv~~~~~~~~~~l~~~l~ 211 (246)
+.... +... ..+ ..-++++|+++.........|...+.
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~ 132 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAIN 132 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHH
Confidence 11111 1110 111 11289999999876666666777663
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.80 E-value=7.3e-05 Score=72.02 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=73.5
Q ss_pred CccccccchHHHHHHHhhCCC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
..++|.++.++.+.+.+.... .........+.++|++|+|||+||+.+.... .. ..+.++++....... ..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~~-~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERHT-VS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhccccc-HH
Confidence 358999999999988876321 0112335678999999999999999998743 22 233444443221111 11
Q ss_pred HHHHHc----cCC-CC------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecC
Q 045522 172 AMVEAL----DGH-ES------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTR 224 (246)
Q Consensus 172 ~i~~~~----~~~-~~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR 224 (246)
.++..- +.. .. ......+|+||+++......+..|...+..+ ..++-||+||.
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 111100 000 00 1234569999999988766677777776543 13455778875
No 148
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.79 E-value=0.00026 Score=58.90 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=28.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC 159 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 159 (246)
-.++|+|..|+|||||+..+.. .....|.++++++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 3677999999999999998887 4566787777765
No 149
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.78 E-value=7.4e-05 Score=66.95 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=53.5
Q ss_pred ccccccchHHHHHHHhhCCC-------CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-----
Q 045522 96 EICGRVDEKNELLSKLLCES-------SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT----- 163 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~----- 163 (246)
++.|.+..++++.+.+...- .-+-...+-+.++|++|+|||+||+.+++. ...+| +.+..+.-
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s~l~~k~~ 220 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGSEFVQKYL 220 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHHHHhc
Confidence 57788888877766542110 001133567889999999999999999984 33333 11211110
Q ss_pred CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
......+..++..+ ....+.+|+||+++.
T Consensus 221 ge~~~~lr~lf~~A-----~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 221 GEGPRMVRDVFRLA-----RENAPSIIFIDEVDS 249 (398)
T ss_pred chhHHHHHHHHHHH-----HhcCCeEEEEECHhh
Confidence 01122333444333 234678999999864
No 150
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.78 E-value=4.7e-05 Score=64.13 Aligned_cols=95 Identities=19% Similarity=0.252 Sum_probs=56.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEeCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLDDV 195 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlDdv 195 (246)
..-+.++|++|+|||.||.++.++.. ..--.+.++++ .+++.++......... .-.+--||||||+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDl 176 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDI 176 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecc
Confidence 45788999999999999999999543 33335556644 3455555555443111 1234459999999
Q ss_pred CCCCccCHHH--HHHhhcCC-CCCcEEEEecCC
Q 045522 196 WDGDYIKWKP--FYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 196 ~~~~~~~~~~--l~~~l~~~-~~gs~IliTtR~ 225 (246)
-......|.. +...+... ...+ .++||..
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~~~~-~~~tsN~ 208 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYESRS-LIITSNL 208 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHhhcc-ceeecCC
Confidence 7765455542 33323222 1222 2777754
No 151
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.78 E-value=4.2e-05 Score=67.08 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=51.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-----CHHHHHHHHHHHccCCCCCCCCeEEEEEeC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-----DEFRVAKAMVEALDGHESRLGKRFLLVLDD 194 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-----~~~~~~~~i~~~~~~~~~~~~kr~LlVlDd 194 (246)
.....++|||++|+|||.+|+.+++.. .-.| +-++.++-. ..++.++++.+.+......+++.++|++|+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el--g~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM--GIEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc--CCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 567899999999999999999999954 3333 333432222 456677777766543322356899999999
Q ss_pred CCC
Q 045522 195 VWD 197 (246)
Q Consensus 195 v~~ 197 (246)
++.
T Consensus 221 IDA 223 (413)
T PLN00020 221 LDA 223 (413)
T ss_pred hhh
Confidence 964
No 152
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.75 E-value=3.3e-05 Score=70.68 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=90.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc-----cc--------------cCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK-----RK--------------FDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~--------------F~~~ 155 (246)
++++|.+.....|.+.+.... -.......|+.|+||||+|+.++...--. .. |.-+
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 367999999999999886543 23567778999999999998876532111 11 1111
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcE-EEEecCChhHHhhc-C
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESK-ILVTTRKGSVTSMM-G 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-IliTtR~~~va~~~-~ 233 (246)
+-++..++..+.. .++|.+...-. +..++-.+.|+|+|+-.....|..|+..+.....+-+ |+.||-...+...+ .
T Consensus 91 iEiDaASn~gVdd-iR~i~e~v~y~-P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 91 IEIDAASNTGVDD-IREIIEKVNYA-PSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred hhhhhhhccChHH-HHHHHHHhccC-CccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh
Confidence 2222222222222 22333332211 2567888999999988777889999999987766665 45555555554443 4
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
..+.|.++.|+.
T Consensus 169 Rcq~f~fkri~~ 180 (515)
T COG2812 169 RCQRFDFKRLDL 180 (515)
T ss_pred ccccccccCCCH
Confidence 477788877764
No 153
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.72 E-value=6e-05 Score=64.15 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=51.6
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES- 182 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~- 182 (246)
...+++.++... +-+.++|+.|+|||++++........ ..| ...-++.+...+...+...+-..+.....
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC
Confidence 345666666543 57789999999999999988763221 112 23345555554444433322112211111
Q ss_pred ----CCCCeEEEEEeCCCCCCccCH
Q 045522 183 ----RLGKRFLLVLDDVWDGDYIKW 203 (246)
Q Consensus 183 ----~~~kr~LlVlDdv~~~~~~~~ 203 (246)
-.+|+.++++||+.-...+.|
T Consensus 93 ~~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 93 VYGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp EEEEESSSEEEEEEETTT-S---TT
T ss_pred CCCCCCCcEEEEEecccCCCCCCCC
Confidence 567899999999976543333
No 154
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=7.6e-05 Score=71.20 Aligned_cols=125 Identities=12% Similarity=0.267 Sum_probs=79.6
Q ss_pred CccccccchHHHHHHHhhCCC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
..++|.++.++.+.+.+.... .+.+....+....||.|||||.||+.+... .-+.-+..+-+++|+...... ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkHs-VS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKHS-VS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHHH-HH
Confidence 578999999999988775422 123455678888999999999999988772 211114455555554322211 11
Q ss_pred HHHHHccCCCC-------------CCCCeE-EEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 172 AMVEALDGHES-------------RLGKRF-LLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 172 ~i~~~~~~~~~-------------~~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
+-++.+.. .+.++| +|.||++.....+.++-|...|.++ .+++-||.||.-
T Consensus 568 ---rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 568 ---RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred ---HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 11222211 455656 8999999988767777788777654 234667777753
No 155
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00016 Score=65.76 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-----CHHHHHHHHHHHccCCCCCCCCeEEEEEe
Q 045522 119 QKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-----DEFRVAKAMVEALDGHESRLGKRFLLVLD 193 (246)
Q Consensus 119 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-----~~~~~~~~i~~~~~~~~~~~~kr~LlVlD 193 (246)
...+..+.+.|++|+|||+||..+.. ...|..+--++..+-. .--..+..+.+... +..-..||+|
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY-----kS~lsiivvD 605 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAY-----KSPLSIIVVD 605 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhh-----cCcceEEEEc
Confidence 46678888999999999999999887 3356655555432211 11223444444443 3466789999
Q ss_pred CCCCCCccCH------------HHHHHhhcCC-CCCc--EEEEecCChhHHhhcCC----CceEeCCCCCC
Q 045522 194 DVWDGDYIKW------------KPFYHCLKNG-LHES--KILVTTRKGSVTSMMGS----TDIISVKELTK 245 (246)
Q Consensus 194 dv~~~~~~~~------------~~l~~~l~~~-~~gs--~IliTtR~~~va~~~~~----~~~~~l~~L~~ 245 (246)
|+... .+| ..|...|... .+|- -|+-||....|...|+- ...|.++.|+.
T Consensus 606 diErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 606 DIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred chhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 99553 233 2333344333 2233 35667888888888864 66777777653
No 156
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.70 E-value=0.00012 Score=56.43 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=28.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF 164 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 164 (246)
++.|+|++|+||||++..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36799999999999999887733 2234567777765543
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.65 E-value=0.0001 Score=67.79 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=58.3
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhccccccc---ccCeEEEEEecCCC
Q 045522 95 EEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR---KFDKILWVCVSDTF 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~~~~ 164 (246)
.++.|.+..++++.+.+...-. .+-...+-+.++|++|+|||++|+.+++...... .+....++++...-
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 4577899988888776532100 0112345689999999999999999998532210 11233444433210
Q ss_pred -------CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 -------DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 -------~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.....+..++..+... ...+++++|+||+++.
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~-a~~g~p~IIfIDEiD~ 300 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREK-ASDGRPVIVFFDEMDS 300 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHH-hhcCCCceEEEehhhh
Confidence 1122333333332211 0235789999999974
No 158
>PHA00729 NTP-binding motif containing protein
Probab=97.65 E-value=0.00056 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|.|.|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999998874
No 159
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0001 Score=63.94 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=71.9
Q ss_pred ccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC--CH
Q 045522 96 EICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--DE 166 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~ 166 (246)
++=|-++.+++|.+...-.-. -+-...+-|.++|++|+|||-||+++++ +....|-.++=-.+-+.+ .-
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtFIrvvgSElVqKYiGEG 229 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATFIRVVGSELVQKYIGEG 229 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceEEEeccHHHHHHHhccc
Confidence 455788888888775522110 0234456788999999999999999999 555566322210000000 12
Q ss_pred HHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC-----------C---ccCHHHHHHhhcC--CCCCcEEEEecCChhHH
Q 045522 167 FRVAKAMVEALDGHESRLGKRFLLVLDDVWDG-----------D---YIKWKPFYHCLKN--GLHESKILVTTRKGSVT 229 (246)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~-----------~---~~~~~~l~~~l~~--~~~gs~IliTtR~~~va 229 (246)
..+.++++.-+. ....++|++|.++.- + +...-+|+..+.. ....-|||..|...++.
T Consensus 230 aRlVRelF~lAr-----ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 230 ARLVRELFELAR-----EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred hHHHHHHHHHHh-----hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 344455554443 347899999998641 1 1122233333332 13346888877665543
No 160
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.64 E-value=0.00024 Score=62.13 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=72.1
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
.++|....++++.+.+..-. .....|.|+|..|+||+++|+.++.. ....-..-+.+++.... ...+...++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 58999988888888775543 23356889999999999999999862 22112233445555432 2222222222
Q ss_pred HccC----CC----C--CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 176 ALDG----HE----S--RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 176 ~~~~----~~----~--~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
.-.. .. . .....=.|+||++..........|...+..+. ...+||.||..
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1100 00 0 11112258899998876556666777665431 13588888754
No 161
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.59 E-value=0.00036 Score=61.06 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=68.0
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHH
Q 045522 97 ICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEA 176 (246)
Q Consensus 97 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 176 (246)
++|....++++.+.+..-. .....|.|+|..|+||+++|+.++..-. ..-..-+-|++.... ...+-..++..
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~--r~~~pfv~vnc~~~~-~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSK--RWQGPLVKLNCAALS-ENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcC--ccCCCeEEEeCCCCC-hHHHHHHHhcc
Confidence 4677777777776665433 2335688999999999999999986322 111223344554322 22222222211
Q ss_pred cc----CCC------CCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 177 LD----GHE------SRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 177 ~~----~~~------~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
.. +.. ......=.|+||++..........|...+..+. ...+||.||..
T Consensus 74 ~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 74 EAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11 000 011123459999998876555566766665431 23488888753
No 162
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=5.1e-05 Score=56.05 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 163
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.58 E-value=0.00033 Score=65.31 Aligned_cols=126 Identities=14% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 172 (246)
....++|....++++.+.+..-. .....|.|+|..|+|||++|+.+++.-. ..-..-+.+++..-.. ..+-..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~-~~~~~~ 266 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE-TLLESE 266 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH-HHHHHH
Confidence 34579999999999888775433 2234678999999999999999987322 1112334455544322 222222
Q ss_pred HHHHccC----CC------CCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 173 MVEALDG----HE------SRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 173 i~~~~~~----~~------~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
++....+ .. ......=.|+||++..........|...+..+. ...+||.||..
T Consensus 267 lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 267 LFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 2211110 00 011223468999998876566666777775431 12578887754
No 164
>PRK07261 topology modulation protein; Provisional
Probab=97.57 E-value=0.00015 Score=57.40 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=33.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccc-cccCeEEEEEecCCCCHHHHHHHHHHH
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVK-RKFDKILWVCVSDTFDEFRVAKAMVEA 176 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~ 176 (246)
-|.|+|++|+||||||+.+....... -+.+...|-......+..++...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~ 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNF 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHH
Confidence 47899999999999999987643322 235666665433334444444444433
No 165
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.57 E-value=0.00023 Score=60.39 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=49.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccccccc-CeEEEEEecCCC-CHHHHHHHHHHHccCC----------CC--------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKF-DKILWVCVSDTF-DEFRVAKAMVEALDGH----------ES-------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~~~~~----------~~-------- 182 (246)
.-++|.|.+|+|||||++.+++ ..+.+| +.++++-+++.. ...++.+.+.+.-... .+
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999999 444455 456666676654 4455666555431111 00
Q ss_pred -----------CC-CCeEEEEEeCC
Q 045522 183 -----------RL-GKRFLLVLDDV 195 (246)
Q Consensus 183 -----------~~-~kr~LlVlDdv 195 (246)
-+ ++..|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 24 99999999998
No 166
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.57 E-value=0.0003 Score=61.25 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=65.7
Q ss_pred ccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc-ccccccCeEEE----EEecCCCC-----H---
Q 045522 100 RVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD-EVKRKFDKILW----VCVSDTFD-----E--- 166 (246)
Q Consensus 100 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~w----v~~~~~~~-----~--- 166 (246)
|..+-.--++.|+. +....|.+.|.+|+|||-||-+..-.+ ..+..|..++- +.++++.. .
T Consensus 229 rn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 229 RNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 55555555667765 457899999999999999985432211 11223332221 11222110 0
Q ss_pred ----------------------HHHHHHHHHHccCCCC----CCCC---eEEEEEeCCCCCCccCHHHHHHhhcCCCCCc
Q 045522 167 ----------------------FRVAKAMVEALDGHES----RLGK---RFLLVLDDVWDGDYIKWKPFYHCLKNGLHES 217 (246)
Q Consensus 167 ----------------------~~~~~~i~~~~~~~~~----~~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 217 (246)
...+..++..-..+.. .+|+ +.++|+|.+.+. .-.+++..+...+.||
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---TpheikTiltR~G~Gs 379 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---TPHELKTILTRAGEGS 379 (436)
T ss_pred ccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---CHHHHHHHHHhccCCC
Confidence 1111111111110000 3444 459999999775 3466677777788999
Q ss_pred EEEEecCChh
Q 045522 218 KILVTTRKGS 227 (246)
Q Consensus 218 ~IliTtR~~~ 227 (246)
||+.|---.+
T Consensus 380 KIVl~gd~aQ 389 (436)
T COG1875 380 KIVLTGDPAQ 389 (436)
T ss_pred EEEEcCCHHH
Confidence 9999875433
No 167
>PHA02244 ATPase-like protein
Probab=97.56 E-value=0.00038 Score=61.28 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=50.7
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC--------CCCCeEEEEEeCC
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES--------RLGKRFLLVLDDV 195 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~kr~LlVlDdv 195 (246)
.|.|+|++|+|||+||+.+... ....| +.++...+...+. ........ ...+--+++||++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~pf-----v~In~l~d~~~L~----G~i~~~g~~~dgpLl~A~~~GgvLiLDEI 189 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDLDF-----YFMNAIMDEFELK----GFIDANGKFHETPFYEAFKKGGLFFIDEI 189 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecChHHHhhc----ccccccccccchHHHHHhhcCCEEEEeCc
Confidence 4778999999999999999883 32222 2222111111110 00000000 0123459999999
Q ss_pred CCCCccCHHHHHHhhcC-----------CCCCcEEEEecCC
Q 045522 196 WDGDYIKWKPFYHCLKN-----------GLHESKILVTTRK 225 (246)
Q Consensus 196 ~~~~~~~~~~l~~~l~~-----------~~~gs~IliTtR~ 225 (246)
..........|...+.. ..++.++|+|+..
T Consensus 190 d~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 190 DASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred CcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 87654445555555531 1356788888875
No 168
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.56 E-value=0.00041 Score=64.29 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=76.2
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHH
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAM 173 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 173 (246)
...++|....++++.+.+..-. .....|.|+|..|+|||++|+.++..- ...-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAAS--PRADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEEEEcccCCh-HHHHHHh
Confidence 4569999999988888776543 334578899999999999999998832 22222445566654332 2222222
Q ss_pred HHHccCCCC----------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCCh
Q 045522 174 VEALDGHES----------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRKG 226 (246)
Q Consensus 174 ~~~~~~~~~----------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~~ 226 (246)
+...++... .....=.|+||++..........|...+..+. ...+||.||...
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 221111000 01112247999998876566667777765431 145888887643
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00032 Score=66.20 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=39.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.+++|.++.++++..+|..... ......++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999988865432 12334679999999999999999988743
No 170
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.55 E-value=0.00029 Score=56.99 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=53.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-------------C-----C
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-------------R-----L 184 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-------------~-----~ 184 (246)
++..|.|++|+||||++..+........ ..++++. ........ +.+..+.... . .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~a-pT~~Aa~~----L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~ 91 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLA-PTNKAAKE----LREKTGIEAQTIHSFLYRIPNGDDEGRPEL 91 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEE-SSHHHHHH----HHHHHTS-EEEHHHHTTEECCEECCSSCC-
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEEC-CcHHHHHH----HHHhhCcchhhHHHHHhcCCcccccccccC
Confidence 6888999999999999998877433322 2333333 22222222 2223221111 0 2
Q ss_pred CCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhHH
Q 045522 185 GKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSVT 229 (246)
Q Consensus 185 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va 229 (246)
.+.-+||+|++...+...+..+...... .|+++|+.-=..++.
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQLP 134 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHH
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchhc
Confidence 3446999999977654556666655544 477888776554443
No 171
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.55 E-value=0.00028 Score=62.25 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=58.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCe-EEEEEecC-CCCHHHHHHHHHHHccCCC
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDK-ILWVCVSD-TFDEFRVAKAMVEALDGHE 181 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~-~~~~~~~~~~i~~~~~~~~ 181 (246)
..++++.+..-. . -.-..|+|++|+|||||++.+.+..... +-+. ++|+.+++ ..++.++.+.+...+..+.
T Consensus 120 ~~RvID~l~PiG----k-GQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG----K-GQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC----C-CceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 344677665432 2 2456899999999999999988733211 2133 46766655 4567778887777665432
Q ss_pred C----------------------CCCCeEEEEEeCCC
Q 045522 182 S----------------------RLGKRFLLVLDDVW 196 (246)
Q Consensus 182 ~----------------------~~~kr~LlVlDdv~ 196 (246)
. -.+++.+||+|++.
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 46899999999983
No 172
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.54 E-value=0.00035 Score=67.07 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=73.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|+...++.+.+.+..-. .....|.|+|..|+|||++|+.+++.. ...-...+.+++.... ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCC-hhHhhhhhc
Confidence 469999998888877665432 223578899999999999999998732 2222344455554432 111111121
Q ss_pred HHccCC----CC------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCCh
Q 045522 175 EALDGH----ES------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRKG 226 (246)
Q Consensus 175 ~~~~~~----~~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~~ 226 (246)
....+. .. .....=.|+||++..........|...+..+. .+.+||.||...
T Consensus 449 g~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred CcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111100 00 01122369999998876555666777664331 245888888653
No 173
>PRK06696 uridine kinase; Validated
Probab=97.50 E-value=0.00023 Score=58.69 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=35.6
Q ss_pred cccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 99 GRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.|.+.+++|.+.+.... .....+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35667778888886533 2567899999999999999999988743
No 174
>PRK04132 replication factor C small subunit; Provisional
Probab=97.50 E-value=0.00071 Score=65.70 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=75.0
Q ss_pred eCCchHHHHHHHHhccccccccc-CeEEEEEecCCCCHHHHHHHHHHHccCCCCCCC-CeEEEEEeCCCCCCccCHHHHH
Q 045522 130 MGGIGKNTLAQLTSNHDEVKRKF-DKILWVCVSDTFDEFRVAKAMVEALDGHESRLG-KRFLLVLDDVWDGDYIKWKPFY 207 (246)
Q Consensus 130 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~-kr~LlVlDdv~~~~~~~~~~l~ 207 (246)
|.++||||+|..++++.-- +.+ ...+-++.++..+.. .+++++..+....++.+ +..++|||+++.........|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALL 651 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGIN-VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALR 651 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHH
Confidence 7899999999999985421 222 356778888766655 34445544433223332 5689999999998767778888
Q ss_pred HhhcCCCCCcEEEEecCC-hhHHhhc-CCCceEeCCCCCC
Q 045522 208 HCLKNGLHESKILVTTRK-GSVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 208 ~~l~~~~~gs~IliTtR~-~~va~~~-~~~~~~~l~~L~~ 245 (246)
..+......+++|+++.+ ..+...+ .....+++.+++.
T Consensus 652 k~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~ 691 (846)
T PRK04132 652 RTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRD 691 (846)
T ss_pred HHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCH
Confidence 888765556776666554 3443333 2367788888763
No 175
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.49 E-value=0.00079 Score=62.56 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=70.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|....++++.+.+..-. ..-..|.|+|..|+||+.||+.++..- ...-..-+.+++..-. ...+-..++
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~-~~~~e~elF 276 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIP-DDVVESELF 276 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCC-HHHHHHHhc
Confidence 368898888888777664322 122458899999999999999987622 1111233455555432 122222222
Q ss_pred HHccCCC--------C-C-CCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCCh
Q 045522 175 EALDGHE--------S-R-LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRKG 226 (246)
Q Consensus 175 ~~~~~~~--------~-~-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~~ 226 (246)
....+.. . + ....=.|+||+++.........|...+..+. ...+||.||...
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 2111000 0 1 1122357999998876555566777665431 124788877653
No 176
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00072 Score=55.94 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=37.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccc----cCeEEEEEecCCCCHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK----FDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~ 170 (246)
+.-.++.|+|++|+|||+|+..++........ ...++|++..+.++...+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 45589999999999999999988643222221 3688999988776655443
No 177
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0014 Score=57.58 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=50.0
Q ss_pred HHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-CCCceEeCCCCCC
Q 045522 172 AMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 172 ~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~~~~~~~l~~L~~ 245 (246)
.+.+.+... +..+++-++|+|+++.......+.|...+....+++.+|++|.+ ..+...+ +....+.+.+++.
T Consensus 119 ~l~~~~~~~-~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 119 ALLDFCGVG-THRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHhccC-CccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 344444332 24567778999999998778889999999888778866655554 5554443 3367788877764
No 178
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.48 E-value=0.0018 Score=56.22 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=32.3
Q ss_pred chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccc
Q 045522 102 DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDE 147 (246)
Q Consensus 102 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 147 (246)
.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+..+
T Consensus 3 ~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 3 PYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred HHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34556667666543 15678999999999999999999877443
No 179
>CHL00176 ftsH cell division protein; Validated
Probab=97.48 E-value=0.0002 Score=67.82 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=51.8
Q ss_pred CccccccchHHHHHHH---hhCCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC----
Q 045522 95 EEICGRVDEKNELLSK---LLCESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF---- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~---- 164 (246)
.++.|.++..+++.+. |..... -+....+-+.++|++|+|||+||+.++... ..+| +.++.++-.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p~---i~is~s~f~~~~~ 257 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVPF---FSISGSEFVEMFV 257 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCe---eeccHHHHHHHhh
Confidence 4688887766665544 322210 011224568999999999999999998843 2222 112211100
Q ss_pred -CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 -DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 -~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
....-+..++... .....++|+||+++.
T Consensus 258 g~~~~~vr~lF~~A-----~~~~P~ILfIDEID~ 286 (638)
T CHL00176 258 GVGAARVRDLFKKA-----KENSPCIVFIDEIDA 286 (638)
T ss_pred hhhHHHHHHHHHHH-----hcCCCcEEEEecchh
Confidence 0011223333333 234678999999964
No 180
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.47 E-value=0.00012 Score=71.10 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=37.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.++.++.+.+++............++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357899998988888663221001123358999999999999999999984
No 181
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00034 Score=64.59 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=61.8
Q ss_pred CccccccchHHHHHHHhhCCCCC------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEE-EecCCC-CH
Q 045522 95 EEICGRVDEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWV-CVSDTF-DE 166 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~~~~~~-~~ 166 (246)
.++=|.++.+.+|.+.+....++ +-...+-|.++||+|+|||.||+++.++. .-.|-.+.=- -++... ..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vPf~~isApeivSGvSGES 267 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVPFLSISAPEIVSGVSGES 267 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCceEeecchhhhcccCccc
Confidence 46778999998888877553321 22335678899999999999999999944 3344211110 011111 23
Q ss_pred HHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 167 FRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
++-+++++++.. +.-.+++++|+++.
T Consensus 268 EkkiRelF~~A~-----~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 268 EKKIRELFDQAK-----SNAPCIVFIDEIDA 293 (802)
T ss_pred HHHHHHHHHHHh-----ccCCeEEEeecccc
Confidence 445556666653 44789999999965
No 182
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.00074 Score=58.97 Aligned_cols=122 Identities=8% Similarity=0.073 Sum_probs=70.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccccc-----c---------------cccCeEEEEEecC----------CCCHHHHHH
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEV-----K---------------RKFDKILWVCVSD----------TFDEFRVAK 171 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~---------------~~F~~~~wv~~~~----------~~~~~~~~~ 171 (246)
...+.++|+.|+|||++|+.+....-- . +...-..++.... ...++. ++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~-iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA-VR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH-HH
Confidence 457889999999999999877653210 0 0011223333211 123333 33
Q ss_pred HHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhcC-CCceEeCCCCCC
Q 045522 172 AMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMMG-STDIISVKELTK 245 (246)
Q Consensus 172 ~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~~-~~~~~~l~~L~~ 245 (246)
++.+.+.... ..+++-++|+|++...+...-..+...+.....++.+|++|.+. .+...+. ....+.+.+++.
T Consensus 100 ~l~~~~~~~p-~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~ 174 (325)
T PRK08699 100 EIIDNVYLTS-VRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSH 174 (325)
T ss_pred HHHHHHhhCc-ccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCH
Confidence 4555554332 33556666779998877666677777777655567677777764 3443332 256666766653
No 183
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.43 E-value=0.00067 Score=59.32 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=68.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|.++....+...+..+ +.+.+.|++|+|||+||+.+... .. ....++.+.......++.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchh
Confidence 34888888888877777654 35889999999999999999983 33 2345666777776666655443
Q ss_pred HHcc---CCC-C------CCCCeEEEEEeCCCCCCccCHHHHHHhhc
Q 045522 175 EALD---GHE-S------RLGKRFLLVLDDVWDGDYIKWKPFYHCLK 211 (246)
Q Consensus 175 ~~~~---~~~-~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 211 (246)
-... ... . ...-+.++++|.++......-..|...+.
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 3322 111 0 22222699999999876554555655554
No 184
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.43 E-value=0.00059 Score=65.01 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=72.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
+.++|....++++.+.+..-. .....|.|+|..|+||+++|+.+.+.- ...-..-+.|++..-. ...+...++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCC-hHHHHHHhc
Confidence 468888888888777665433 222457899999999999999998732 1111233445554432 223333343
Q ss_pred HHccCCCC------C-CCCeEEEEEeCCCCCCccCHHHHHHhhcCCC---C--------CcEEEEecCC
Q 045522 175 EALDGHES------R-LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL---H--------ESKILVTTRK 225 (246)
Q Consensus 175 ~~~~~~~~------~-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~IliTtR~ 225 (246)
........ + ....=.|+||++..........|...+..+. . ..+||.||..
T Consensus 398 g~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 32211100 1 1122359999998876566666777775431 1 3467777654
No 185
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.42 E-value=8.4e-05 Score=68.69 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=39.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+++|.++.++++++.|......-....+++.++||+|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 68999999999999883321112245579999999999999999998874
No 186
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00042 Score=65.01 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC--CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT--FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
.....|.|.|+.|+|||+||+.+++... ++..-++.+++++.- ...+.+.+.+...+... +.....+|||||++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~--~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA--LWYAPSIIVLDDLD 504 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHH--HhhCCcEEEEcchh
Confidence 3456799999999999999999998665 555667777777542 23444444443333221 55678899999995
No 187
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.40 E-value=9.6e-05 Score=66.87 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=54.0
Q ss_pred ccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC--CH
Q 045522 96 EICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--DE 166 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~ 166 (246)
++.|.+..++++.+.+...-. -+-.....+.|+|++|+|||+||+.+++ .....|-.+.--.+.+.+ ..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~fi~V~~seL~~k~~Ge~ 261 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATFLRVVGSELIQKYLGDG 261 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCEEEEecchhhhhhcchH
Confidence 467888888888776632110 0112345688999999999999999999 444444221111111111 11
Q ss_pred HHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 167 FRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
...+..++.... .+.+.+|+||+++.
T Consensus 262 ~~~vr~lF~~A~-----~~~P~ILfIDEID~ 287 (438)
T PTZ00361 262 PKLVRELFRVAE-----ENAPSIVFIDEIDA 287 (438)
T ss_pred HHHHHHHHHHHH-----hCCCcEEeHHHHHH
Confidence 233344444332 24678999999753
No 188
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.40 E-value=0.00044 Score=54.89 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=59.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccc-cc--c-------------CeEEEEEecCCCCHHHHHHHHHHHccCCCC----
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVK-RK--F-------------DKILWVCVSDTFDEFRVAKAMVEALDGHES---- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F-------------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---- 182 (246)
.+++|.|+.|.|||||++.+..-.... .. | ..+.++.-...+-...+.+.+...+.....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 589999999999999999987743210 00 0 012222111111111222222111111100
Q ss_pred ----CCCCeEEEEEeCCCCC-CccCHHHHHHhhcCCCCCcEEEEecCChhHHhhcCCCceEeC
Q 045522 183 ----RLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNGLHESKILVTTRKGSVTSMMGSTDIISV 240 (246)
Q Consensus 183 ----~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~~~~~~~~~l 240 (246)
+-.+.-+++||+-... |......+...+.....+..||++|.+...... .++.+.+
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 4467789999987654 222233344444332246678888888776653 3455444
No 189
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.35 E-value=0.00059 Score=63.55 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=36.2
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+++|.+..++.+...+.... ...+.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999988775432 356789999999999999999763
No 190
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.35 E-value=0.0003 Score=65.02 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=34.1
Q ss_pred CccccccchHHHHHHHhh---CCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLL---CESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.++..+++.+.+. .... .+....+-+.++|++|+|||+||+.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 468898877666554332 1100 01123355889999999999999999884
No 191
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00067 Score=61.84 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=57.9
Q ss_pred Cccccccc---hHHHHHHHhhCCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH--
Q 045522 95 EEICGRVD---EKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE-- 166 (246)
Q Consensus 95 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-- 166 (246)
+++-|-|+ +++++++.|..... -+.+-.+-|.++|++|.|||-||++++.+..+ .| |...+.+|+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--PF----F~~sGSEFdEm~ 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--PF----FYASGSEFDEMF 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--Ce----Eeccccchhhhh
Confidence 45677665 56677777755431 12233567899999999999999999985543 32 3333344432
Q ss_pred ----HHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 167 ----FRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 167 ----~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
..-.++++.+.+ ..-.|+|++|.++.
T Consensus 378 VGvGArRVRdLF~aAk-----~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAK-----ARAPCIIFIDEIDA 407 (752)
T ss_pred hcccHHHHHHHHHHHH-----hcCCeEEEEechhh
Confidence 122334444443 34689999999865
No 192
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0038 Score=51.26 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCCCccCHHHHHH---hhcC-CCCCcEEEEecCChhHHhhcCCCceE
Q 045522 186 KRFLLVLDDVWDGDYIKWKPFYH---CLKN-GLHESKILVTTRKGSVTSMMGSTDII 238 (246)
Q Consensus 186 kr~LlVlDdv~~~~~~~~~~l~~---~l~~-~~~gs~IliTtR~~~va~~~~~~~~~ 238 (246)
++-|.|||..++. .+.+.+.. .+.. ..+|+-+|+.|..+.++..+.++.+|
T Consensus 162 ePkl~ILDE~DSG--LDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 162 EPKLAILDEPDSG--LDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred CCCEEEecCCCcC--ccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 5679999999886 44444432 2221 13577788999999999888765554
No 193
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.30 E-value=0.0035 Score=48.04 Aligned_cols=98 Identities=20% Similarity=0.215 Sum_probs=56.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEE------EecCCCCHHHHHH-HHHHHccCCCCCCCCeEEEEEeCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWV------CVSDTFDEFRVAK-AMVEALDGHESRLGKRFLLVLDDV 195 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------~~~~~~~~~~~~~-~i~~~~~~~~~~~~kr~LlVlDdv 195 (246)
.+++|.|+.|.|||||++.+..-... ....+|+ ..-...+.-...+ .++.. +..+.-++++|+-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~~i~~~~~lS~G~~~rv~lara------l~~~p~illlDEP 97 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTVKIGYFEQLSGGEKMRLALAKL------LLENPNLLLLDEP 97 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeEEEEEEccCCHHHHHHHHHHHH------HhcCCCEEEEeCC
Confidence 68999999999999999999874321 1222222 1111133222222 22333 3345678999987
Q ss_pred CCC-CccCHHHHHHhhcCCCCCcEEEEecCChhHHhh
Q 045522 196 WDG-DYIKWKPFYHCLKNGLHESKILVTTRKGSVTSM 231 (246)
Q Consensus 196 ~~~-~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~ 231 (246)
-.. |......+...+... +..||++|.+.+....
T Consensus 98 ~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 98 TNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred ccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 543 323445555555443 2468888887666543
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.29 E-value=8.8e-05 Score=58.75 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=53.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccc-cccCeEEEEEecCCCCH---HHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVK-RKFDKILWVCVSDTFDE---FRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~---~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
...+.+.|+.|+|||.||+.+.. ... ......+-++++.-... ...+........... .....-+|+||+++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v-~~~~~gVVllDEidK 79 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYV-GAEEGGVVLLDEIDK 79 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHH-HHHHHTEEEEETGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhccccee-eccchhhhhhHHHhh
Confidence 46788999999999999999988 333 44456666776654441 111111111111000 011122999999999
Q ss_pred CCc-----------cCHHHHHHhhc
Q 045522 198 GDY-----------IKWKPFYHCLK 211 (246)
Q Consensus 198 ~~~-----------~~~~~l~~~l~ 211 (246)
... ..+..|...+.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHhc
Confidence 876 66788877774
No 195
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.26 E-value=0.0017 Score=51.60 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=58.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc---ccccc---c--CeEEEEEecCCCCHHHHHHHHHHHccCCC-----C------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD---EVKRK---F--DKILWVCVSDTFDEFRVAKAMVEALDGHE-----S------ 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~------ 182 (246)
-.+++|+|+.|+|||||.+.+..+. .+... | ..+.|+. + .+.++.++... .
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999886321 11111 1 0133321 1 23344443211 0
Q ss_pred -----------CCCC--eEEEEEeCCCCC-CccCHHHHHHhhcCC-CCCcEEEEecCChhHHhhcCCCceEeC
Q 045522 183 -----------RLGK--RFLLVLDDVWDG-DYIKWKPFYHCLKNG-LHESKILVTTRKGSVTSMMGSTDIISV 240 (246)
Q Consensus 183 -----------~~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTtR~~~va~~~~~~~~~~l 240 (246)
+..+ .-+++||+--.. +......+...+... ..|..||++|.+.+.... .++.+.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 3345 678999987443 223334444444321 246678899988876643 3455544
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0048 Score=53.68 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=83.1
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc------------------ccccCeEEEEEec---C
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV------------------KRKFDKILWVCVS---D 162 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------~~~F~~~~wv~~~---~ 162 (246)
.+++...+..+ .-...+.+.|+.|+||+++|+.+....-- .+...-..|+.-. +
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 44555555332 23457889999999999999876542110 0111223344332 2
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-CCCceEeC
Q 045522 163 TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-GSTDIISV 240 (246)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~~~~~~~l 240 (246)
...++.+ +.+.+.+... +..++.-++|+|+++.......+.|...+.....++.+|++|.+ ..+..++ +....+.+
T Consensus 87 ~I~vdqi-R~l~~~~~~~-~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 87 SITVEQI-RQCNRLAQES-SQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred cCCHHHH-HHHHHHHhhC-cccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 3444444 3444443322 24567778999999988767888899999888788877776665 4454444 33677788
Q ss_pred CCCCC
Q 045522 241 KELTK 245 (246)
Q Consensus 241 ~~L~~ 245 (246)
.+++.
T Consensus 165 ~~~~~ 169 (319)
T PRK06090 165 TPPST 169 (319)
T ss_pred CCCCH
Confidence 77664
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.24 E-value=0.0023 Score=60.07 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=83.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccc---ccc---ccCeEEEEEecCCCCHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDE---VKR---KFDKILWVCVSDTFDEFR 168 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~---~F~~~~wv~~~~~~~~~~ 168 (246)
..+-+|+.+..+|...+..--.. +..-+.+-|.|.+|+|||..+..|.+... .++ .| ..+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHH
Confidence 45778999999998888554321 23345899999999999999999988543 111 24 233455555567888
Q ss_pred HHHHHHHHccCCCC-----------------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-CCCcEEEEec
Q 045522 169 VAKAMVEALDGHES-----------------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-LHESKILVTT 223 (246)
Q Consensus 169 ~~~~i~~~~~~~~~-----------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTt 223 (246)
+...|...+.+... -..+.+++++|+++..-...-+-|...|.+. .++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 89999888877643 3456789999988553111123344445433 5778876654
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.0026 Score=55.49 Aligned_cols=135 Identities=8% Similarity=0.080 Sum_probs=81.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-------------------ccCeEEEEEe--cC
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-------------------KFDKILWVCV--SD 162 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~~--~~ 162 (246)
.+.+...+..+ .-...+.+.|+.|+||+++|+.+....--.. .-.-..++.- +.
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC
Confidence 34455555332 2235778899999999999987754321100 0111223321 22
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhc-CCCceEeC
Q 045522 163 TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMM-GSTDIISV 240 (246)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~-~~~~~~~l 240 (246)
...++.+- ++.+.+... +..+++-++|+|+++.......+.|+..+.....++.+|++|.+. .+...+ +....+.+
T Consensus 86 ~I~id~iR-~l~~~~~~~-~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 86 DIGVDQVR-EINEKVSQH-AQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCHHHHH-HHHHHHhhc-cccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 23343333 344443322 245677889999999887777888999999887888877777654 444343 33677788
Q ss_pred CCCCC
Q 045522 241 KELTK 245 (246)
Q Consensus 241 ~~L~~ 245 (246)
.++++
T Consensus 164 ~~~~~ 168 (325)
T PRK06871 164 HPPEE 168 (325)
T ss_pred CCCCH
Confidence 77764
No 199
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.24 E-value=0.0023 Score=57.57 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=35.4
Q ss_pred CccccccchHHHHHHHhhC------C--CCCC----CCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 95 EEICGRVDEKNELLSKLLC------E--SSEQ----QKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~------~--~~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..++|.++.++.+...+.. . .... ......+.++|++|+|||+||+.+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 5689999999888665521 0 0000 01135799999999999999999987
No 200
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.0006 Score=55.23 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.++.|.|+.|+||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988765
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0034 Score=54.61 Aligned_cols=137 Identities=11% Similarity=0.119 Sum_probs=80.3
Q ss_pred chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc----------------cccCeEEEEEe-cCC-
Q 045522 102 DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK----------------RKFDKILWVCV-SDT- 163 (246)
Q Consensus 102 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------~~F~~~~wv~~-~~~- 163 (246)
...+.+...+..+ .-...+.+.|+.|+||+++|..+....--. +...-..|+.. .+.
T Consensus 11 ~~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 11 RAYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 3445555555332 223468899999999999997765432111 11122334421 111
Q ss_pred -------CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-CC
Q 045522 164 -------FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-GS 234 (246)
Q Consensus 164 -------~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~~ 234 (246)
..+ +-++++.+.+... +..+++-++|||+++......-+.|+..+.....++.+|++|.+ ..+...+ +.
T Consensus 86 ~~k~~~~I~i-dqIR~l~~~~~~~-p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 86 GDKLRTEIVI-EQVREISQKLALT-PQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred cccccccccH-HHHHHHHHHHhhC-cccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 112 2333444444332 24467889999999887666677788888887778877777664 4444443 33
Q ss_pred CceEeCCCCCC
Q 045522 235 TDIISVKELTK 245 (246)
Q Consensus 235 ~~~~~l~~L~~ 245 (246)
...+.+.+++.
T Consensus 164 Cq~i~~~~~~~ 174 (319)
T PRK08769 164 CQRLEFKLPPA 174 (319)
T ss_pred heEeeCCCcCH
Confidence 56677766553
No 202
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0044 Score=54.35 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=83.1
Q ss_pred chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc---c----------------cccCeEEEEEec-
Q 045522 102 DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV---K----------------RKFDKILWVCVS- 161 (246)
Q Consensus 102 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~----------------~~F~~~~wv~~~- 161 (246)
..-+++...+..+ .-...+.+.|+.|+||+++|..+....-- . ....-..++.-.
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK 83 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc
Confidence 3445566666432 23457889999999999999876542210 0 111122334322
Q ss_pred --CCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-CCCce
Q 045522 162 --DTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-GSTDI 237 (246)
Q Consensus 162 --~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~~~~~ 237 (246)
....++++- ++.+.+... +..+++-++|+|+++......-+.|+..|.....++.+|++|.+ ..+..++ +....
T Consensus 84 ~~~~I~idqiR-~l~~~~~~~-~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 84 GKSSLGVDAVR-EVTEKLYEH-ARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccCCHHHHH-HHHHHHhhc-cccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 123343333 344433322 24578889999999988767788899999888778877777765 4455443 33566
Q ss_pred EeCCCCCC
Q 045522 238 ISVKELTK 245 (246)
Q Consensus 238 ~~l~~L~~ 245 (246)
+.+.+++.
T Consensus 162 ~~~~~~~~ 169 (334)
T PRK07993 162 HYLAPPPE 169 (334)
T ss_pred ccCCCCCH
Confidence 77777653
No 203
>PRK13695 putative NTPase; Provisional
Probab=97.21 E-value=0.00014 Score=57.53 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-+.|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 204
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.20 E-value=0.00049 Score=66.56 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=55.6
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC----C
Q 045522 95 EEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD----T 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~----~ 163 (246)
+++.|.++.++++.+.+...-. -+-...+.+.++|++|+|||+||+.+++.. ...| +.++.+. .
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~i~~~~ 252 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPEIMSKY 252 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHHHhccc
Confidence 3578999998888776632110 011233568899999999999999998843 2232 2233211 1
Q ss_pred C-CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 F-DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 ~-~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
. .....+..+++... .....+|+||+++.
T Consensus 253 ~g~~~~~l~~lf~~a~-----~~~p~il~iDEid~ 282 (733)
T TIGR01243 253 YGESEERLREIFKEAE-----ENAPSIIFIDEIDA 282 (733)
T ss_pred ccHHHHHHHHHHHHHH-----hcCCcEEEeehhhh
Confidence 1 12233444444432 23567999999854
No 205
>PRK07667 uridine kinase; Provisional
Probab=97.19 E-value=0.00079 Score=54.31 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+.+.+.+.... ....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666665443 44589999999999999999988773
No 206
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.17 E-value=0.0013 Score=60.49 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=51.6
Q ss_pred CccccccchHHHHHHHhh--CC--CCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-----C
Q 045522 95 EEICGRVDEKNELLSKLL--CE--SSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-----D 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~--~~--~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-----~ 165 (246)
.++.|.+..++.+..... .. ...+-...+-|.++|++|+|||.+|+.+.+. ..-.| +-++.+.-+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~l~~~~vGe 302 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHHhcccccCh
Confidence 356776655555443211 00 0001133467889999999999999999984 33333 112221111 1
Q ss_pred HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 166 EFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
....+..++..... ..+++|++|+++.
T Consensus 303 se~~l~~~f~~A~~-----~~P~IL~IDEID~ 329 (489)
T CHL00195 303 SESRMRQMIRIAEA-----LSPCILWIDEIDK 329 (489)
T ss_pred HHHHHHHHHHHHHh-----cCCcEEEehhhhh
Confidence 23344445444322 3689999999964
No 207
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.17 E-value=0.0006 Score=61.38 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=55.7
Q ss_pred CccccccchHHHHHHHhhC----CCC------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC--
Q 045522 95 EEICGRVDEKNELLSKLLC----ESS------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD-- 162 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~----~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-- 162 (246)
..++|.+..++.+...+.. -.. +-....+.+.++|++|+|||+||+.+.. .....|-.+-...+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~--~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR--ILDVPFAIADATTLTEAG 148 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH--HhCCCceecchhhcccCC
Confidence 4689999998887555421 000 0011236789999999999999999987 3333442111111111
Q ss_pred --CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 163 --TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 163 --~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
..+...++..++....... ....+-+|+||+++..
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl 185 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDV-EKAQRGIVYIDEIDKI 185 (412)
T ss_pred cccchHHHHHHHHHHhccccH-HHcCCcEEEEechhhh
Confidence 0123444443333221111 1235679999999765
No 208
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.17 E-value=0.0007 Score=59.33 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=35.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..++|.++.+..++-.+... ...-+.|.|++|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999998887777653 245677999999999999999864
No 209
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.16 E-value=0.0039 Score=48.95 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=60.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccc-cc--cC---eEEEEEecCCCCHHHHHHHHHHHccCCCC------------CC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVK-RK--FD---KILWVCVSDTFDEFRVAKAMVEALDGHES------------RL 184 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~---~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------~~ 184 (246)
.+++|+|+.|.|||||++.+..-.... .. ++ .+.++.-...+....+.+++........+ +-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999998743211 11 11 22233211111112333433211011111 44
Q ss_pred CCeEEEEEeCCCCC-CccCHHHHHHhhcCCCCCcEEEEecCChhHHhhcCCCceEeC
Q 045522 185 GKRFLLVLDDVWDG-DYIKWKPFYHCLKNGLHESKILVTTRKGSVTSMMGSTDIISV 240 (246)
Q Consensus 185 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~~~~~~~~~l 240 (246)
.+.-++++|+--.. |......+...+... +..||++|.+..... . .++.+.+
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~-~d~i~~l 160 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-F-HDRVLDL 160 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-h-CCEEEEE
Confidence 56778999986543 223334444545433 356888888876654 2 3455544
No 210
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.16 E-value=0.0016 Score=63.11 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=54.9
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC----C
Q 045522 95 EEICGRVDEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD----T 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~----~ 163 (246)
.++.|.+..++.|.+.+...-.. +-...+-+.++|++|+|||+||+.+++. ...+| +.+..++ .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~~l~~~~ 527 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGPEILSKW 527 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHhhcc
Confidence 45778887777776655321100 1123355889999999999999999984 33333 2222211 1
Q ss_pred C-CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 F-DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 ~-~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
. .....+..++.... .....+|+||+++.
T Consensus 528 vGese~~i~~~f~~A~-----~~~p~iifiDEid~ 557 (733)
T TIGR01243 528 VGESEKAIREIFRKAR-----QAAPAIIFFDEIDA 557 (733)
T ss_pred cCcHHHHHHHHHHHHH-----hcCCEEEEEEChhh
Confidence 1 12334444554442 23578999999864
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.16 E-value=0.002 Score=51.29 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=58.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE---ecCCCCHHHHH------HHHHHHccCCC---------C--
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC---VSDTFDEFRVA------KAMVEALDGHE---------S-- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~------~~i~~~~~~~~---------~-- 182 (246)
.+++|.|+.|.|||||++.++.-. . .....+++. +. ..+..... .++++.++... +
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~--~-~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL--K-PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--C-CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 589999999999999999998832 2 233333332 21 11221111 11233332211 0
Q ss_pred ----------CCCCeEEEEEeCCCCC-CccCHHHHHHhhcCC-CC-CcEEEEecCChhHHhh
Q 045522 183 ----------RLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNG-LH-ESKILVTTRKGSVTSM 231 (246)
Q Consensus 183 ----------~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~IliTtR~~~va~~ 231 (246)
+-...-++++|+--.. |......+...+... .. +..||++|.+.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 4456789999987543 223344444444422 12 5678888888765543
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=97.16 E-value=0.0037 Score=56.82 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=68.0
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
.++|....+.++.+....-. ..-..+.|.|.+|+|||++|+.+.+... ..-..-+.+++..- ....+...+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~s~--r~~~~f~~i~c~~~-~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNASP--RASKPFIAINCGAL-PEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHhcC--CCCCCeEEEeCCCC-CHHHHHHHhcC
Confidence 47777777766666543322 1224577999999999999999987432 11122333444332 22222222221
Q ss_pred HccCCC----C------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCCh
Q 045522 176 ALDGHE----S------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRKG 226 (246)
Q Consensus 176 ~~~~~~----~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~~ 226 (246)
...+.. . .....-.|+||++..........|...+..+. ...+||.||...
T Consensus 208 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 208 HARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 111100 0 11122379999998876555666777665431 135888887653
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.15 E-value=0.0012 Score=53.57 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=36.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
+.-.++.|+|++|+|||+|+..+.... ......++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 556899999999999999998877632 23356889998875 55544443
No 214
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.0019 Score=50.87 Aligned_cols=110 Identities=20% Similarity=0.190 Sum_probs=58.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE------------------ecCCCCH--HHHHHHHHHHccCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC------------------VSDTFDE--FRVAKAMVEALDGHES 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------------------~~~~~~~--~~~~~~i~~~~~~~~~ 182 (246)
.+++|.|+.|.|||||.+.++.-... ....+++. +.+.... ..+.+++ +.....
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~l---LS~G~~ 102 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI---LSGGQR 102 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHh---hCHHHH
Confidence 58999999999999999999774221 11111111 0111100 1111111 100000
Q ss_pred --------CCCCeEEEEEeCCCCC-CccCHHHHHHhhcCCCCCcEEEEecCChhHHhhcCCCceEeC
Q 045522 183 --------RLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNGLHESKILVTTRKGSVTSMMGSTDIISV 240 (246)
Q Consensus 183 --------~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~~~~~~~~~l 240 (246)
+..+.-+++||+-... |......+...+.....+..||++|.+.+.... .++.+.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 4456779999987543 222334444444433235678899988777654 3455544
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.001 Score=63.76 Aligned_cols=119 Identities=19% Similarity=0.194 Sum_probs=72.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc---cccc--ccCeEEEEEecC-------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD---EVKR--KFDKILWVCVSD------- 162 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~--~F~~~~wv~~~~------- 162 (246)
..++||+++++++++.|.... ++.+ .++|.+|+|||+++.-++... .+-. ....++-++++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~----KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGaky 243 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT----KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKY 243 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC----CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccc
Confidence 468999999999999998765 2222 368999999999886655421 1111 122333333221
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC-------C--ccCHHHHHHhhcCCCCCcEEEEecCC
Q 045522 163 TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG-------D--YIKWKPFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~-------~--~~~~~~l~~~l~~~~~gs~IliTtR~ 225 (246)
.-..++-++.+++.+... ++.+|++|.++.. . -+.-+-|+..|..+.- -.|-.||-+
T Consensus 244 RGeFEeRlk~vl~ev~~~-----~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL-~~IGATT~~ 309 (786)
T COG0542 244 RGEFEERLKAVLKEVEKS-----KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL-RCIGATTLD 309 (786)
T ss_pred cCcHHHHHHHHHHHHhcC-----CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe-EEEEeccHH
Confidence 224566777777776433 4899999998641 0 1122335555555433 347777754
No 216
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.14 E-value=0.0016 Score=53.46 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=55.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccccc--ccccC----------eEEEEEecCCCCHHH-------HHHHHHHHccCCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEV--KRKFD----------KILWVCVSDTFDEFR-------VAKAMVEALDGHES 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~----------~~~wv~~~~~~~~~~-------~~~~i~~~~~~~~~ 182 (246)
.+.+.|+|+.|.|||||.+.+...... ...|- ..++..+...-++.. -++.+...+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~---- 104 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALR---- 104 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHH----
Confidence 378899999999999999887632100 01110 011122222212111 1111111111
Q ss_pred CCCCeEEEEEeCCCCCCc-cCH----HHHHHhhcCC-CCCcEEEEecCChhHHhhc
Q 045522 183 RLGKRFLLVLDDVWDGDY-IKW----KPFYHCLKNG-LHESKILVTTRKGSVTSMM 232 (246)
Q Consensus 183 ~~~kr~LlVlDdv~~~~~-~~~----~~l~~~l~~~-~~gs~IliTtR~~~va~~~ 232 (246)
...++.|++||+.-..-. .+. ..+...+... ..+..+|+||.+.+++...
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 345789999999866421 111 1122233222 2345799999998887654
No 217
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.00056 Score=55.08 Aligned_cols=96 Identities=16% Similarity=0.047 Sum_probs=49.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe--cCCCCHHH---------------HHHHHHHHccCCCCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV--SDTFDEFR---------------VAKAMVEALDGHESRLG 185 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~---------------~~~~i~~~~~~~~~~~~ 185 (246)
.++.|+|+.|.||||+|..+..... .+...++.+.- ........ -..+++..+.. ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~---~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE---EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh---hCC
Confidence 4788999999999999977766332 22222222210 10000000 01111111111 123
Q ss_pred CeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC
Q 045522 186 KRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 186 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~ 225 (246)
+.-+||+|.+...+.++..++...+. ..|..|++|.++
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 44589999996543222333444433 357789999988
No 218
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.13 E-value=0.0017 Score=56.36 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=57.7
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHH
Q 045522 97 ICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEA 176 (246)
Q Consensus 97 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 176 (246)
++=..+....++..|... +.|.|.|++|+||||+|+.+.. .....| +.|++....+..+++..-.-.
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhcCCCceee
Confidence 333344556677777432 4589999999999999999988 333222 345555555554444321111
Q ss_pred ccCC--------CC---CCCCeEEEEEeCCCCCCccCHHHHHHhh
Q 045522 177 LDGH--------ES---RLGKRFLLVLDDVWDGDYIKWKPFYHCL 210 (246)
Q Consensus 177 ~~~~--------~~---~~~kr~LlVlDdv~~~~~~~~~~l~~~l 210 (246)
+... .. ...+.+.+++|+++.........|...|
T Consensus 114 l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lL 158 (327)
T TIGR01650 114 LKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVL 158 (327)
T ss_pred ccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHh
Confidence 1000 00 1235577999999876544444444443
No 219
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.13 E-value=0.0016 Score=52.03 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDE 147 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 147 (246)
.-..+.|+|++|.|||||.+.+|...+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 346899999999999999999998643
No 220
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.12 E-value=0.001 Score=58.18 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..++|.++.++.+.-.+... +..-+.+.|++|+||||+|+.+..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 46899999888877655422 224588999999999999998754
No 221
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.11 E-value=0.00036 Score=51.70 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.0
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988774
No 222
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.10 E-value=0.0017 Score=54.81 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccc----cccCeEEEEEecCCCCHHHHHHHHHHHcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVK----RKFDKILWVCVSDTFDEFRVAKAMVEALD 178 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 178 (246)
..-.+.=|+|++|+|||+|+..++-..... ..=..++|++-...++..++.+ |++..+
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~ 97 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFG 97 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTT
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccc
Confidence 344689999999999999997776432222 1235799999999998877654 666544
No 223
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.08 E-value=0.0068 Score=54.24 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=33.1
Q ss_pred ccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHH-HHHhcc
Q 045522 100 RVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLA-QLTSNH 145 (246)
Q Consensus 100 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~ 145 (246)
|.+..++|..||.... -..|.|.||.|+||+.|+ .++..+
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~ 41 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKD 41 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhC
Confidence 5678899999997654 379999999999999999 666663
No 224
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.06 E-value=0.0051 Score=57.68 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=66.5
Q ss_pred eEEEEEEeeCCchHHH-HHHHHhcccccccccCeEEEEEecCCC--CHHHHHHHHHHHccCCCC----------------
Q 045522 122 LHIISIVGMGGIGKNT-LAQLTSNHDEVKRKFDKILWVCVSDTF--DEFRVAKAMVEALDGHES---------------- 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~---------------- 182 (246)
-.||.|+|..|+|||| |++.+|.+--..+ . -|.+.++- ....+.+.+.+.++....
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY~~~---G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGYADN---G--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhcccccC---C--eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4799999999999997 8888888532111 1 23333333 334556666666644321
Q ss_pred -------------------CCCCeEEEEEeCCCCCCccCHHHHH----HhhcCCCCCcEEEEecCCh---hHHhhcCCCc
Q 045522 183 -------------------RLGKRFLLVLDDVWDGDYIKWKPFY----HCLKNGLHESKILVTTRKG---SVTSMMGSTD 236 (246)
Q Consensus 183 -------------------~~~kr~LlVlDdv~~~~~~~~~~l~----~~l~~~~~gs~IliTtR~~---~va~~~~~~~ 236 (246)
.-.+-..||+|..+... ..-+-|. ..+.. ...-|+||||-.. ..+..+|...
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~lar-RrdlKliVtSATm~a~kf~nfFgn~p 523 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLAR-RRDLKLIVTSATMDAQKFSNFFGNCP 523 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHh-hccceEEEeeccccHHHHHHHhCCCc
Confidence 22455689999987653 2233333 33333 2467999999774 4455566444
Q ss_pred eEeCC
Q 045522 237 IISVK 241 (246)
Q Consensus 237 ~~~l~ 241 (246)
.+.++
T Consensus 524 ~f~Ip 528 (1042)
T KOG0924|consen 524 QFTIP 528 (1042)
T ss_pred eeeec
Confidence 44443
No 225
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.05 E-value=0.00013 Score=64.26 Aligned_cols=118 Identities=25% Similarity=0.288 Sum_probs=75.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccccccc-CeEEEEEecCCCCHHHHHHHHHHHccCCCC------------CCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF-DKILWVCVSDTFDEFRVAKAMVEALDGHES------------RLGK 186 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------~~~k 186 (246)
...+.+.++|+|||||||++-.+.. ...-| +.+.++.+....+...+.-.+...+..... ..++
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~r 88 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDR 88 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhh
Confidence 4468999999999999999988777 34456 566677777666666666665655544331 6688
Q ss_pred eEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhHHhhcCCCceEeCCCCC
Q 045522 187 RFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSVTSMMGSTDIISVKELT 244 (246)
Q Consensus 187 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~~~~~~~~~l~~L~ 244 (246)
+.++++||+.+-. ..-..+...+..+.+.-.|+.|+|..... .....+.++.|+
T Consensus 89 r~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~ 142 (414)
T COG3903 89 RALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLS 142 (414)
T ss_pred hHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccc
Confidence 9999999984431 11122223333444555788888865332 224445555544
No 226
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.04 E-value=0.0045 Score=56.69 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=70.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|....+..+...+..-. .....+.|.|.+|+|||++|+.++..-. ..-..-+-+++..- +...+...+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~i~i~c~~~-~~~~~~~~lf 210 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHSP--RAKAPFIALNMAAI-PKDLIESELF 210 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcCC--CCCCCeEeeeCCCC-CHHHHHHHhc
Confidence 358898888887776664322 2335688999999999999999988421 11123334444433 2222222222
Q ss_pred HHccCCC----C------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 175 EALDGHE----S------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 175 ~~~~~~~----~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
....+.. . .....=-|+||++..........|...+..+. ...+||+||..
T Consensus 211 g~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 211 GHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred CCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 2111100 0 01111247889998876555666777665431 12388888864
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.04 E-value=0.0034 Score=50.82 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=24.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV 160 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 160 (246)
+++.++|+.|+||||.+-+++.....+ -..+..++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~ 37 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISA 37 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecC
Confidence 689999999999999887766643332 334555554
No 228
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0062 Score=52.55 Aligned_cols=122 Identities=10% Similarity=0.097 Sum_probs=77.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc---c---cc---cccCeEEEEEe-cCCCCHHHHHHHHHHHccCCCCCCCCeEEEE
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD---E---VK---RKFDKILWVCV-SDTFDEFRVAKAMVEALDGHESRLGKRFLLV 191 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~---~~F~~~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlV 191 (246)
..+..++|..|+||+++|..+.+.. . .. +.+ ...++.. +......++. ++.+.+.....-.+++-++|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~-n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPA-NIILFDIFDKDLSKSEFL-SAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCc-ceEEeccCCCcCCHHHHH-HHHHHhccCCcccCCceEEE
Confidence 4677799999999999998876632 0 01 122 2333432 2334554444 45555543322236888999
Q ss_pred EeCCCCCCccCHHHHHHhhcCCCCCcEEEEecC-ChhHHhhc-CCCceEeCCCCCC
Q 045522 192 LDDVWDGDYIKWKPFYHCLKNGLHESKILVTTR-KGSVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 192 lDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR-~~~va~~~-~~~~~~~l~~L~~ 245 (246)
+|++..........|...+......+.+|++|. ...+...+ .....+++.++++
T Consensus 96 I~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~ 151 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQ 151 (299)
T ss_pred EecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCH
Confidence 999987765667789999988878887776554 34444433 3477888888754
No 229
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.03 E-value=0.003 Score=53.12 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=65.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE--ecC--CCCHHHHHHHHHHHccCCCC---------------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC--VSD--TFDEFRVAKAMVEALDGHES--------------- 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--~~~--~~~~~~~~~~i~~~~~~~~~--------------- 182 (246)
-.+++|+|..|+|||||++.+.. -..-....+.|-. +.. .....+-..+++...+....
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 36899999999999999999988 3333333443321 111 11233445556666553321
Q ss_pred -------CCCCeEEEEEeCCCCCCc-cCHHHHHHhhcC--CCCCcEEEEecCChhHHhhcCC
Q 045522 183 -------RLGKRFLLVLDDVWDGDY-IKWKPFYHCLKN--GLHESKILVTTRKGSVTSMMGS 234 (246)
Q Consensus 183 -------~~~kr~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~IliTtR~~~va~~~~~ 234 (246)
+.-+.-|+|.|.--+.-+ ..-.++...+.+ ...|-..+..|.+-.++..++.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 455778999998755421 112333333331 1345667888888888777654
No 230
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.03 E-value=0.0017 Score=54.88 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-CCCCeEEEEEeCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-RLGKRFLLVLDDV 195 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-~~~kr~LlVlDdv 195 (246)
+.-+++.|.|.+|+|||+++.++.. ........++||+..+. ...+++.+.. ++.... ...+-.|.++|-.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~ 92 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAF 92 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcc
Confidence 5668999999999999999988777 44455889999988764 4445554443 554432 3344445555544
No 231
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.02 E-value=0.00076 Score=56.40 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=56.0
Q ss_pred CccccccchHHH---HHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC-----CCCH
Q 045522 95 EEICGRVDEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD-----TFDE 166 (246)
Q Consensus 95 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~ 166 (246)
.+++|.++...+ |++.|.....=+.-..+-|..+|++|.|||.+|+++.+.. +-.|- -|...+ .-+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~l---~vkat~liGehVGdg 195 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPLL---LVKATELIGEHVGDG 195 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCceE---EechHHHHHHHhhhH
Confidence 468998876553 5566654432234557889999999999999999999944 33431 121100 1122
Q ss_pred HHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 167 FRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.+-+.++.+.. .+.-.|+++||.++.
T Consensus 196 ar~Ihely~rA-----~~~aPcivFiDE~DA 221 (368)
T COG1223 196 ARRIHELYERA-----RKAAPCIVFIDELDA 221 (368)
T ss_pred HHHHHHHHHHH-----HhcCCeEEEehhhhh
Confidence 22222232222 334689999998854
No 232
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0038 Score=60.71 Aligned_cols=109 Identities=10% Similarity=0.146 Sum_probs=69.1
Q ss_pred ccccccchHHHHHHHhhCCCCCCC--CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQ--KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAM 173 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 173 (246)
.++|.++.+..|.+.+........ .....+.+.|+.|+|||.||+++.. -+-+..+.-+-++++.-.. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e-------v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE-------V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh-------h
Confidence 578888888888887765432111 2456778899999999999998877 4444444555555554211 1
Q ss_pred HHHccCCCC-------------CCCC-eEEEEEeCCCCCCccCHHHHHHhhcCC
Q 045522 174 VEALDGHES-------------RLGK-RFLLVLDDVWDGDYIKWKPFYHCLKNG 213 (246)
Q Consensus 174 ~~~~~~~~~-------------~~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~ 213 (246)
.+-.+.+.. ++.+ ..+|+||+|+..+......|...+..+
T Consensus 634 skligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 222222111 3334 458899999988766677677777543
No 233
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0027 Score=54.12 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=59.4
Q ss_pred ccccccchHHHHHHHhhCCCC------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC------
Q 045522 96 EICGRVDEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT------ 163 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~------ 163 (246)
++-|.+...+.|.+..+-.-. ......+-|.++|++|.||+-||++|+.... ..| .+++..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STF-----FSvSSSDLvSKW 206 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STF-----FSVSSSDLVSKW 206 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cce-----EEeehHHHHHHH
Confidence 578889888888775432110 1225578899999999999999999998443 333 222221
Q ss_pred -CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 -FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 -~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
-..+.+.+++++-. ...+..+|++|.++.
T Consensus 207 mGESEkLVknLFemA-----Re~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMA-----RENKPSIIFIDEIDS 236 (439)
T ss_pred hccHHHHHHHHHHHH-----HhcCCcEEEeehhhh
Confidence 02345555555544 345889999999964
No 234
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.01 E-value=0.00052 Score=55.31 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|+|.|++|+||||||+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988773
No 235
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.00 E-value=0.0011 Score=57.61 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD 165 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 165 (246)
+.-+++-|+|++|+||||||.++.... ...-..++|++..+.++
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALD 96 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhH
Confidence 556899999999999999998776632 23345667776655443
No 236
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.0065 Score=49.89 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccccccc------CeEEEEEecCCCCHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF------DKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~ 171 (246)
+.-.++.|+|++|+|||+||..+.... .... ..++|++....++...+.+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 455799999999999999998876532 1222 5778999887777655443
No 237
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.99 E-value=0.00061 Score=51.70 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 045522 124 IISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 238
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.99 E-value=0.0014 Score=54.84 Aligned_cols=59 Identities=32% Similarity=0.349 Sum_probs=35.7
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD 165 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 165 (246)
...++++.+.... .+..+|+|.|+||.|||||...+......+++--.++-|+-+++++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 4556777776543 4568999999999999999988776443322223444444444443
No 239
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.99 E-value=0.004 Score=54.10 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=40.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccc----cccCeEEEEEecCCCCHHHHHHHHHHHcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVK----RKFDKILWVCVSDTFDEFRVAKAMVEALD 178 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 178 (246)
+.-+++-|+|++|+|||+|+..++-..... ..-..++|++....+++..+.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 456899999999999999997765422221 1124789999988888877654 444443
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.99 E-value=0.00076 Score=53.38 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=28.3
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC 159 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 159 (246)
...+|.+.|++|+||||+|+.++. .....+...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 446999999999999999999998 4444555555553
No 241
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.98 E-value=0.00064 Score=55.40 Aligned_cols=27 Identities=37% Similarity=0.361 Sum_probs=23.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.+..+|+|.|++|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999999999998743
No 242
>PRK08233 hypothetical protein; Provisional
Probab=96.98 E-value=0.00064 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..+|+|.|++|+||||||..+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998743
No 243
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.0038 Score=50.85 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=55.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccc---c-------c---cccCeEEEEEecCCCCHH----HHHHHHHHHccCCCCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDE---V-------K---RKFDKILWVCVSDTFDEF----RVAKAMVEALDGHESRL 184 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~---~-------~---~~F~~~~wv~~~~~~~~~----~~~~~i~~~~~~~~~~~ 184 (246)
..++.|.|+.|.||||+.+.+..-.- . . ..|+.+ .......-+.. .+...+. ++..-..+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I-~~~~~~~d~~~~~~S~fs~e~~-~~~~il~~~ 106 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRL-LSRLSNDDSMERNLSTFASEMS-ETAYILDYA 106 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhhe-eEecCCccccchhhhHHHHHHH-HHHHHHHhc
Confidence 37899999999999999887642210 0 0 112211 22222111111 1111111 110000133
Q ss_pred CCeEEEEEeCCCCCC-ccC----HHHHHHhhcCCCCCcEEEEecCChhHHhhcC
Q 045522 185 GKRFLLVLDDVWDGD-YIK----WKPFYHCLKNGLHESKILVTTRKGSVTSMMG 233 (246)
Q Consensus 185 ~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~IliTtR~~~va~~~~ 233 (246)
.++.|++||+.-..- ..+ ...+...+.. .|+.+|++|.+.+++..+.
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 567899999985431 111 1223333333 3788999999998887654
No 244
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.96 E-value=0.0092 Score=47.48 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=53.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccc-c--ccCe--EEEEEecCC--CCHHHHHH-HHHHHccCCCCCCCCeEEEEEeC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVK-R--KFDK--ILWVCVSDT--FDEFRVAK-AMVEALDGHESRLGKRFLLVLDD 194 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~--~~wv~~~~~--~~~~~~~~-~i~~~~~~~~~~~~kr~LlVlDd 194 (246)
.+++|+|+.|.|||||++.+..-.... . .++. +.+ +.+. .+.-.-.+ .++.. +..+.-+++||+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~q~~~LSgGq~qrv~lara------l~~~p~lllLDE 97 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVY--KPQYIDLSGGELQRVAIAAA------LLRNATFYLFDE 97 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEE--EcccCCCCHHHHHHHHHHHH------HhcCCCEEEEEC
Confidence 589999999999999999988733211 1 1111 112 1222 11111111 12222 334667899998
Q ss_pred CCCC-CccCHHHHHHhhcCC-CC-CcEEEEecCChhHHhh
Q 045522 195 VWDG-DYIKWKPFYHCLKNG-LH-ESKILVTTRKGSVTSM 231 (246)
Q Consensus 195 v~~~-~~~~~~~l~~~l~~~-~~-gs~IliTtR~~~va~~ 231 (246)
--.. |......+...+... .. +..||++|.+......
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 7543 222233333334321 12 2568888888765543
No 245
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.95 E-value=0.00072 Score=55.09 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+...+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45589999999999999999998863
No 246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.94 E-value=0.002 Score=50.92 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999998864
No 247
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.94 E-value=0.0066 Score=47.38 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=31.6
Q ss_pred CCCeEEEEEeCCCCC---CccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 184 LGKRFLLVLDDVWDG---DYIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 184 ~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
.+.--|+|||++-.. .....+++...+.....+.-+|+|.|+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 345569999998543 2245677788887777778999999984
No 248
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.94 E-value=0.004 Score=54.71 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=42.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccc----cccCeEEEEEecCCCCHHHHHHHHHHHccC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVK----RKFDKILWVCVSDTFDEFRVAKAMVEALDG 179 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 179 (246)
..-.+.-|+|++|+|||+|+..++-..... ..-..++|++....|++.++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 455788899999999999998775422221 1125789999999888877655 4555443
No 249
>PHA02774 E1; Provisional
Probab=96.92 E-value=0.0042 Score=57.72 Aligned_cols=69 Identities=19% Similarity=0.062 Sum_probs=46.0
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES 182 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~ 182 (246)
-+..+..+|.. .++...+.|+|++|+|||.+|..+.+-. . -..+.|++....+-+..
T Consensus 420 fl~~lk~~l~~-----~PKknciv~~GPP~TGKS~fa~sL~~~L--~--G~vi~fvN~~s~FwLqp-------------- 476 (613)
T PHA02774 420 FLTALKDFLKG-----IPKKNCLVIYGPPDTGKSMFCMSLIKFL--K--GKVISFVNSKSHFWLQP-------------- 476 (613)
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHHh--C--CCEEEEEECccccccch--------------
Confidence 34555555532 2556789999999999999999998832 1 34567777655443221
Q ss_pred CCCCeEEEEEeCC
Q 045522 183 RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ~~~kr~LlVlDdv 195 (246)
+.+.+ ++||||+
T Consensus 477 l~d~k-i~vlDD~ 488 (613)
T PHA02774 477 LADAK-IALLDDA 488 (613)
T ss_pred hccCC-EEEEecC
Confidence 33344 7999999
No 250
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0018 Score=55.75 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVK 149 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 149 (246)
-++|.++||||.|||+|.+++++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999976554
No 251
>PTZ00301 uridine kinase; Provisional
Probab=96.92 E-value=0.001 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+|+|.|++|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999987765
No 252
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.91 E-value=0.0043 Score=54.53 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=40.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccc----cccCeEEEEEecCCCCHHHHHHHHHHHcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVK----RKFDKILWVCVSDTFDEFRVAKAMVEALD 178 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 178 (246)
..-.++-|+|.+|+|||+|+..++...... ..-..++|++....|.+.++.+ +++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q-ia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-IAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH-HHHHcC
Confidence 456789999999999999998776432221 1123799999999888876543 455543
No 253
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.91 E-value=0.005 Score=53.59 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=35.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccccc----ccCeEEEEEecCCCCHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKR----KFDKILWVCVSDTFDEFRV 169 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~ 169 (246)
..-.++.|+|++|+|||+|+..++....... .-..++|++....++..++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl 147 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL 147 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH
Confidence 4568999999999999999988765222111 1236789988777776653
No 254
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.90 E-value=0.012 Score=50.07 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=62.9
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE---ecCCCCHHHHHHHHHHHccC
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC---VSDTFDEFRVAKAMVEALDG 179 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~~~~~~ 179 (246)
..+.++..|... .....++|+|+.|.|||||.+.+.... ... ...+++. +...-...++...+ ..+..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~--~~~-~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL--STG-ISQLGLRGKKVGIVDERSEIAGCV-NGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc--CCC-CceEEECCEEeecchhHHHHHHHh-ccccc
Confidence 445555666532 235789999999999999999998743 221 2222221 11000111121110 00000
Q ss_pred CC-----C---------------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhHHhh
Q 045522 180 HE-----S---------------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSVTSM 231 (246)
Q Consensus 180 ~~-----~---------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~ 231 (246)
.. . ..-..-++++|+.-.. ..+..+...+. .|..+|+||.+..+...
T Consensus 168 ~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00 0 2246779999998554 44555554443 46789999998777443
No 255
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0015 Score=60.80 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=57.9
Q ss_pred ccccccchHHHHHHHhhCCCCC-------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeE-------EEEEec
Q 045522 96 EICGRVDEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKI-------LWVCVS 161 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~wv~~~ 161 (246)
++=|.|+.+++|.+.....-.. +-...+-|.++||||+|||++|+.+.+ ..+-+|-.+ -||.
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nFlsvkgpEL~sk~vG-- 510 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNFLSVKGPELFSKYVG-- 510 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCeeeccCHHHHHHhcC--
Confidence 4555666666665444322110 224467889999999999999999999 555566332 2443
Q ss_pred CCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 162 DTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
..++.+..+++..... -.++|+||.++.
T Consensus 511 ---eSEr~ir~iF~kAR~~-----aP~IiFfDEiDs 538 (693)
T KOG0730|consen 511 ---ESERAIREVFRKARQV-----APCIIFFDEIDA 538 (693)
T ss_pred ---chHHHHHHHHHHHhhc-----CCeEEehhhHHh
Confidence 2345666676665432 458999999864
No 256
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.88 E-value=0.008 Score=48.72 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=55.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccc--cc--------cc---CeEEEEEecCCCC------HH--HHHHHHHHHccCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEV--KR--------KF---DKILWVCVSDTFD------EF--RVAKAMVEALDGHE 181 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~--------~F---~~~~wv~~~~~~~------~~--~~~~~i~~~~~~~~ 181 (246)
.+++|.|+.|.|||||.+.+.....+ .. .| ....+.++.++.. .. .-+..+++.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~-- 103 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK-- 103 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccC--
Confidence 79999999999999999887642211 00 01 1111222222211 01 112334444321
Q ss_pred CCCCCeEEEEEeCCCCC-CccCHHHH----HHhhcCCCCCcEEEEecCChhHHhhc
Q 045522 182 SRLGKRFLLVLDDVWDG-DYIKWKPF----YHCLKNGLHESKILVTTRKGSVTSMM 232 (246)
Q Consensus 182 ~~~~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~IliTtR~~~va~~~ 232 (246)
.++-++++|+.-.. +......+ ...+. ..|..+|++|.+.+.+..+
T Consensus 104 ---~~p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 104 ---GEPVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred ---CCCeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 37889999996442 11222222 22232 2367899999998887665
No 257
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.87 E-value=0.0048 Score=53.45 Aligned_cols=129 Identities=18% Similarity=0.171 Sum_probs=73.4
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC-HHHHHHH
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD-EFRVAKA 172 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~ 172 (246)
...++|-.++-..+-.++....- .+....+.|+||.|.|||+|......+ .+..-+..+-|.+....- ..-.++.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHH
Confidence 34688988888888777754321 133457889999999999999877765 222223333344433221 1223334
Q ss_pred HHHHccCC-------------------------CCCCCCeEEEEEeCCCCCCccCH-HHHHHhhc----CCCCCcEEEEe
Q 045522 173 MVEALDGH-------------------------ESRLGKRFLLVLDDVWDGDYIKW-KPFYHCLK----NGLHESKILVT 222 (246)
Q Consensus 173 i~~~~~~~-------------------------~~~~~kr~LlVlDdv~~~~~~~~-~~l~~~l~----~~~~gs~IliT 222 (246)
|.+++... ....+.+.++|+|+++-.-...- ..+...|. ...|-|-|.+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 44433211 11455678899988865321111 11223332 34677888899
Q ss_pred cCCh
Q 045522 223 TRKG 226 (246)
Q Consensus 223 tR~~ 226 (246)
||-.
T Consensus 179 trld 182 (408)
T KOG2228|consen 179 TRLD 182 (408)
T ss_pred cccc
Confidence 9974
No 258
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.87 E-value=0.0015 Score=56.82 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=32.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
+.-+++-|+|++|+||||||..++.. ....-..++|++..+.++.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 55689999999999999999887663 2233457778876554443
No 259
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.87 E-value=0.0025 Score=57.17 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHhhCC--------CCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.++.++.+...+... .-......+-|.++|++|+|||+||+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999998887666542 0001123467889999999999999999883
No 260
>PRK09354 recA recombinase A; Provisional
Probab=96.86 E-value=0.002 Score=56.59 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
+.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDP 102 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHH
Confidence 556899999999999999998876632 233467788876665554
No 261
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.84 E-value=0.0074 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.83 E-value=0.0049 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998875
No 263
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.83 E-value=0.00067 Score=50.79 Aligned_cols=93 Identities=14% Similarity=0.236 Sum_probs=43.8
Q ss_pred EEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC--------CCCCeEEEEEeCCC
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES--------RLGKRFLLVLDDVW 196 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~kr~LlVlDdv~ 196 (246)
|.|+|.+|+|||++|+.+.. .....|.. |....+..+.+++..- -...... +. .-++++|++.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R---Iq~tpdllPsDi~G~~--v~~~~~~~f~~~~GPif--~~ill~DEiN 72 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR---IQFTPDLLPSDILGFP--VYDQETGEFEFRPGPIF--TNILLADEIN 72 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE---EE--TT--HHHHHEEE--EEETTTTEEEEEE-TT---SSEEEEETGG
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE---EEecCCCCcccceeee--eeccCCCeeEeecChhh--hceeeecccc
Confidence 67999999999999999998 55566743 2333334444333210 0000000 11 1289999997
Q ss_pred CCCccCHHHHHHhhcCC----------CCCcEEEEecCCh
Q 045522 197 DGDYIKWKPFYHCLKNG----------LHESKILVTTRKG 226 (246)
Q Consensus 197 ~~~~~~~~~l~~~l~~~----------~~gs~IliTtR~~ 226 (246)
......-..+...+.++ .+..-++|.|.|+
T Consensus 73 rappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 73 RAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp GS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred cCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence 76433334444444322 1223567777765
No 264
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.83 E-value=0.003 Score=57.38 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|++|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999998854
No 265
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.82 E-value=0.0042 Score=57.75 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=70.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc-ccccccCeEEEEEecCCCCHHHHHHH-
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD-EVKRKFDKILWVCVSDTFDEFRVAKA- 172 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~~~~~~~~~~~~~- 172 (246)
.+++|....++++.+.+..-. .....|.|.|..|+||+.+|+.+++.- +...+| +-+++..-. ..++..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~--e~llese 282 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIA--ESLLEAE 282 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCC--hhHHHHH
Confidence 358999988888887774322 223578899999999999999998732 122233 334444322 122222
Q ss_pred HHHHccCCC---------C-C-CCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 173 MVEALDGHE---------S-R-LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 173 i~~~~~~~~---------~-~-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
+...-.+.. . + ....=-|+||++..........|...+..+. ...+||.||..
T Consensus 283 LFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 283 LFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred hcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 221111000 0 0 0122359999998876555666777765431 12378887754
No 266
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0023 Score=59.25 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=43.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-------CCHHHHHHHHHHHccCCCCCCCCeEEEEEeC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-------FDEFRVAKAMVEALDGHESRLGKRFLLVLDD 194 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-------~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDd 194 (246)
..-|.+|||+|+|||-||+++++ +..-+| +++-.+ -..+...++++... .....|.|++|.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGPELlNkYVGESErAVR~vFqRA-----R~saPCVIFFDE 612 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGPELLNKYVGESERAVRQVFQRA-----RASAPCVIFFDE 612 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCHHHHHHHhhhHHHHHHHHHHHh-----hcCCCeEEEecc
Confidence 45688999999999999999999 555566 232111 01233444444444 345789999999
Q ss_pred CCC
Q 045522 195 VWD 197 (246)
Q Consensus 195 v~~ 197 (246)
++.
T Consensus 613 iDa 615 (802)
T KOG0733|consen 613 IDA 615 (802)
T ss_pred hhh
Confidence 964
No 267
>PF14516 AAA_35: AAA-like domain
Probab=96.81 E-value=0.0096 Score=52.16 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-----CCHH
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-----FDEF 167 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~ 167 (246)
+.+..+.|...-+++.+.|.... ..+.|.|+..+|||+|...+.+..+.. .+ .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 34556788867777887775533 589999999999999999988744322 33 5557776441 2455
Q ss_pred HHHHHHH----HHccCCCC-------------------------CCCCeEEEEEeCCCCC
Q 045522 168 RVAKAMV----EALDGHES-------------------------RLGKRFLLVLDDVWDG 198 (246)
Q Consensus 168 ~~~~~i~----~~~~~~~~-------------------------~~~kr~LlVlDdv~~~ 198 (246)
.++..++ ++++.... ..+++.+|+||+++..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 4454444 44433211 2368999999999764
No 268
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.80 E-value=0.0042 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 269
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.79 E-value=0.0013 Score=57.45 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=44.0
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...++|.++.++++++.|.......+..-+++.+.||.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999998765544567789999999999999999998876
No 270
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.03 Score=47.98 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=80.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-----------ccccCeEEEEEec-C--CCCHHHHH
Q 045522 105 NELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-----------KRKFDKILWVCVS-D--TFDEFRVA 170 (246)
Q Consensus 105 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----------~~~F~~~~wv~~~-~--~~~~~~~~ 170 (246)
+++...+..+ .-.....++|+.|+||+++|..+....-- .....-..|+.-. . ...++.+
T Consensus 7 ~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqi- 80 (290)
T PRK05917 7 EALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETP- 80 (290)
T ss_pred HHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHH-
Confidence 4455555332 22457789999999999999766542210 1112223344322 1 1344443
Q ss_pred HHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhc-CCCceEeCCCCC
Q 045522 171 KAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMM-GSTDIISVKELT 244 (246)
Q Consensus 171 ~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~-~~~~~~~l~~L~ 244 (246)
+++.+.+... +..++.-++|+|+++......+..|+..+.....++.+|++|.+ ..+...+ +....+.+.++.
T Consensus 81 R~l~~~~~~~-p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~ 155 (290)
T PRK05917 81 RAIKKQIWIH-PYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE 155 (290)
T ss_pred HHHHHHHhhC-ccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh
Confidence 4454544332 25577889999999988777889999999888777776666655 4554443 335666666553
No 271
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0048 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..++|+||.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999876
No 272
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.78 E-value=0.0011 Score=52.81 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=21.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.|.|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998863
No 273
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.00089 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.|.|++|+|||||++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999998864
No 274
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.78 E-value=0.0019 Score=60.07 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=70.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc---------cccccccCeEEEEEecCCCC
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH---------DEVKRKFDKILWVCVSDTFD 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---------~~~~~~F~~~~wv~~~~~~~ 165 (246)
.+++|....++++.+.+..-. .....|.|.|..|+||+.+|+.+++. .+...+| +-+++..-.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pf---v~inCaal~- 290 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPF---VAVNCGAIA- 290 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCe---EEeecccCC-
Confidence 359999988888888764322 23357889999999999999999884 1222223 334444322
Q ss_pred HHHHHHH-HHHHcc----CCC-----CC--CCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEe
Q 045522 166 EFRVAKA-MVEALD----GHE-----SR--LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVT 222 (246)
Q Consensus 166 ~~~~~~~-i~~~~~----~~~-----~~--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliT 222 (246)
..+++. +...-. +.. .+ ....=-|+||++..........|...+..+. ...+||.+
T Consensus 291 -e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaa 369 (538)
T PRK15424 291 -ESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 369 (538)
T ss_pred -hhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEe
Confidence 122222 221111 000 00 1112359999998876555666777665431 12378877
Q ss_pred cCC
Q 045522 223 TRK 225 (246)
Q Consensus 223 tR~ 225 (246)
|..
T Consensus 370 t~~ 372 (538)
T PRK15424 370 THC 372 (538)
T ss_pred cCC
Confidence 643
No 275
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.78 E-value=0.00092 Score=44.52 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
++.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998884
No 276
>PRK14974 cell division protein FtsY; Provisional
Probab=96.77 E-value=0.01 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+..++.++|++|+||||++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999988777763
No 277
>PRK06762 hypothetical protein; Provisional
Probab=96.77 E-value=0.0011 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998874
No 278
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.76 E-value=0.0045 Score=50.93 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=34.3
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFR 168 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 168 (246)
+.-.++.|+|++|+|||+||.+++... ...-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHH
Confidence 456799999999999999998887633 2334678899887 454443
No 279
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.76 E-value=0.0057 Score=51.92 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=50.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccc--ccccCeEEEEEecCCC-CHHHHHHHHHHHccCCCC-----------------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEV--KRKFDKILWVCVSDTF-DEFRVAKAMVEALDGHES----------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~----------------- 182 (246)
.-++|.|..|+|||+|+..+.+.... +.+-+.++++-+++.. +..++.+.+.+.-.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 56799999999999999988874321 1234678888887654 455666666553211110
Q ss_pred ------------C-CCCeEEEEEeCCC
Q 045522 183 ------------R-LGKRFLLVLDDVW 196 (246)
Q Consensus 183 ------------~-~~kr~LlVlDdv~ 196 (246)
- .+++.|+++||+-
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 3 3899999999983
No 280
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0034 Score=49.54 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=56.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccc-cc--------------cc-CeEEEEEecCCC-CHHHHHHHHHHHccCCCC---
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEV-KR--------------KF-DKILWVCVSDTF-DEFRVAKAMVEALDGHES--- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--------------~F-~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~--- 182 (246)
.+++|+|+.|.|||||++.++..... .. .+ ..+.++.-.... ....+.+.+. +.....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--LS~G~~qrv 104 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--LSGGMKQRL 104 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh--cCHHHHHHH
Confidence 58999999999999999998774211 00 00 112222211111 1012222221 111000
Q ss_pred -----CCCCeEEEEEeCCCCC-CccCHHHHHHhhcCC-CCCcEEEEecCChhHHhh
Q 045522 183 -----RLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNG-LHESKILVTTRKGSVTSM 231 (246)
Q Consensus 183 -----~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTtR~~~va~~ 231 (246)
+..+.-++++|+--.. |......+...+... ..|..||++|.+......
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 4567789999987543 222333444444322 236678888888776553
No 281
>PTZ00035 Rad51 protein; Provisional
Probab=96.74 E-value=0.01 Score=52.16 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccc----cccCeEEEEEecCCCCHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVK----RKFDKILWVCVSDTFDEFRV 169 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~ 169 (246)
+.-.++.|+|++|+|||+|+..++...... ..-..++|++....++...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri 169 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI 169 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH
Confidence 556899999999999999998876532211 12246778888777776653
No 282
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.73 E-value=0.016 Score=52.91 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=69.6
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH-
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV- 174 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~- 174 (246)
.++|......++...+..-. .....+.|.|..|+||+++|+.+.... .......+-+++..- . ...+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~-~-~~~~~~~lf 206 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI-P-KDLIESELF 206 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC-C-HHHHHHHhc
Confidence 47887777777776664422 223467899999999999999998732 222223334444433 2 22333222
Q ss_pred HHccCC----CC------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCCh
Q 045522 175 EALDGH----ES------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRKG 226 (246)
Q Consensus 175 ~~~~~~----~~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~~ 226 (246)
....+. .. .....-.|+||++..........|...+..+. .+.+||+||...
T Consensus 207 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 207 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 111000 00 01112348999998876556666776665431 145888888643
No 283
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.013 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=24.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEE
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWV 158 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 158 (246)
..+-|.|+.|+|||||.+.++- -.+-.-..+.|-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG--Ll~p~~G~v~~~ 62 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG--LLRPDAGEVYWQ 62 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc--ccCCCCCeEEec
Confidence 4688999999999999999876 333333444443
No 284
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0024 Score=54.43 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 105 NELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 105 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
.+++..+.... .+..+|+|.|.||+|||||...+......+.+--.++=|+-+++++--.++.
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 45666665544 6678999999999999999988877554445544566666666665544444
No 285
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.71 E-value=0.011 Score=57.33 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=52.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHH----------HHHHHHccCCCCCCCCeEEEEE
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVA----------KAMVEALDGHESRLGKRFLLVL 192 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~----------~~i~~~~~~~~~~~~kr~LlVl 192 (246)
+++.|.|.+|+||||+++.+..-.. ..-..++.+ .........+. ...+..+......-.+.-|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~--~~g~~V~~~-ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIv 445 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWE--AAGYRVIGA-ALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVI 445 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHH--hCCCeEEEE-eCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEE
Confidence 5788999999999999999876332 221223333 22111111111 0111111111112235679999
Q ss_pred eCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhH
Q 045522 193 DDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSV 228 (246)
Q Consensus 193 Ddv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v 228 (246)
|++.-.+...+..|..... ..|++||+.-=..++
T Consensus 446 DEasMv~~~~~~~Ll~~~~--~~~~kliLVGD~~QL 479 (744)
T TIGR02768 446 DEAGMVGSRQMARVLKEAE--EAGAKVVLVGDPEQL 479 (744)
T ss_pred ECcccCCHHHHHHHHHHHH--hcCCEEEEECChHHc
Confidence 9986654344444443222 357888877644433
No 286
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.70 E-value=0.0043 Score=48.53 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=54.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC--CCCHHHHHH-----------------HHHHHccCCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD--TFDEFRVAK-----------------AMVEALDGHESR 183 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~-----------------~i~~~~~~~~~~ 183 (246)
.+++|.|+.|.|||||.+.++.... .....+++.-.. ..+...... .++.. +
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lara------l 97 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARA------L 97 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHH------H
Confidence 5899999999999999999987421 223333332111 011111110 01111 3
Q ss_pred CCCeEEEEEeCCCCC-CccCHHHHHHhhcCC-CCCcEEEEecCChhHHh
Q 045522 184 LGKRFLLVLDDVWDG-DYIKWKPFYHCLKNG-LHESKILVTTRKGSVTS 230 (246)
Q Consensus 184 ~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTtR~~~va~ 230 (246)
-.+.-++++|+--.. |......+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 456788999987543 223334444444322 23667888888876444
No 287
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.70 E-value=0.006 Score=49.90 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF 164 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 164 (246)
..-.++.|.|++|+||||||.+++... ...-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCC
Confidence 456899999999999999998877632 2223456677654433
No 288
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.013 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.8
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|+++|++|+||||++..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999888763
No 289
>PRK06547 hypothetical protein; Provisional
Probab=96.69 E-value=0.0015 Score=51.77 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 290
>PRK03839 putative kinase; Provisional
Probab=96.69 E-value=0.0012 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=20.4
Q ss_pred EEEEEeeCCchHHHHHHHHhccc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998853
No 291
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0023 Score=59.16 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=47.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC--CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT--FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
...+.+.++|++|.|||.||+++++ ....+|-.+.+-.+... -..+..++.++.... ....+.|++|+++.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~-----~~~p~iiFiDEiDs 346 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSELLSKWVGESEKNIRELFEKAR-----KLAPSIIFIDEIDS 346 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH-----cCCCcEEEEEchhh
Confidence 4456899999999999999999999 55556644333222221 123445555555542 35789999999964
No 292
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.68 E-value=0.0041 Score=55.81 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhhCC--------CCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.++.++.+...+... ..........+.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999988777431 0001112367899999999999999999883
No 293
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.67 E-value=0.0091 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.+++|+|+.|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 294
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.66 E-value=0.0014 Score=54.29 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988763
No 295
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.65 E-value=0.00097 Score=48.44 Aligned_cols=21 Identities=48% Similarity=0.573 Sum_probs=18.5
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|-|+|++|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998774
No 296
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0041 Score=52.31 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=54.3
Q ss_pred ccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC--CH
Q 045522 96 EICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--DE 166 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~ 166 (246)
++=|-.+.+++|.+.....-- -+-....-|.++|++|.|||-+|++++| +....|-.++=-.+-+.+ .-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvigselvqkyvgeg 255 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeehhHHHHHHHhhhh
Confidence 455666777776654422110 0123346688999999999999999999 665666433311110100 11
Q ss_pred HHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 167 FRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
....+++++-. ...|-++|++|.++.
T Consensus 256 armvrelf~ma-----rtkkaciiffdeida 281 (435)
T KOG0729|consen 256 ARMVRELFEMA-----RTKKACIIFFDEIDA 281 (435)
T ss_pred HHHHHHHHHHh-----cccceEEEEeecccc
Confidence 22233333332 345889999998853
No 297
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.64 E-value=0.039 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+|.++|++|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987765
No 298
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.64 E-value=0.0064 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 299
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.62 E-value=0.0051 Score=50.51 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=47.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-CCHHHHHHHHHHHccCC---------C-C---------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-FDEFRVAKAMVEALDGH---------E-S--------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~---------~-~--------- 182 (246)
.-++|.|.+|+|||+|+..+.+... -+.++++.+++. ....++.+.+...-... . +
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5688999999999999999988442 234477777654 34555555554331110 0 0
Q ss_pred ----------CCCCeEEEEEeCC
Q 045522 183 ----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~~~kr~LlVlDdv 195 (246)
-.+++.|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 5699999999998
No 300
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.62 E-value=0.0012 Score=53.31 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|+|.|++|+|||||++.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 301
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.62 E-value=0.008 Score=52.06 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccccc----ccCeEEEEEecCCCCHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKR----KFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~ 171 (246)
+.-.++-|+|++|+|||+|+.+++....... .-..++||+....++...+.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 4568999999999999999988765432211 113899999988887776543
No 302
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.62 E-value=0.0075 Score=49.79 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=56.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc------------ccccccCeEEEEEecCCCCH-------HHHHHHHHHHccCCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD------------EVKRKFDKILWVCVSDTFDE-------FRVAKAMVEALDGHES 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~------------~~~~~F~~~~wv~~~~~~~~-------~~~~~~i~~~~~~~~~ 182 (246)
..++.|.|+.|.||||+.+.+.... ..+-.+-..++..+...-+. ..-+.++..-+.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~---- 106 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILS---- 106 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHH----
Confidence 3688999999999999998876521 01111111223333222111 111111111111
Q ss_pred CCCCeEEEEEeCCCCCCc----cC-HHHHHHhhcCCCCCcEEEEecCChhHHhhc
Q 045522 183 RLGKRFLLVLDDVWDGDY----IK-WKPFYHCLKNGLHESKILVTTRKGSVTSMM 232 (246)
Q Consensus 183 ~~~kr~LlVlDdv~~~~~----~~-~~~l~~~l~~~~~gs~IliTtR~~~va~~~ 232 (246)
..+++.|++||+.-..-. .. ...+...+... .++.+|++|.+.+++...
T Consensus 107 ~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 107 NCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 234689999999744311 11 11233344333 578999999999887654
No 303
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.61 E-value=0.0056 Score=55.49 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=43.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCC---------CC----------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGH---------ES---------- 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~---------~~---------- 182 (246)
-..++|+|+.|+|||||++.+..... ....++++.-...-++..+....+...... .+
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999998876322 223444443223334444444333322110 00
Q ss_pred ---------CCCCeEEEEEeCC
Q 045522 183 ---------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ---------~~~kr~LlVlDdv 195 (246)
-+++..|+++|++
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 4589999999998
No 304
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.60 E-value=0.022 Score=51.66 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=26.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
.+++.++|++|+||||++..+.........-..+..++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3689999999999999887776533211222355566653
No 305
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.59 E-value=0.0041 Score=57.73 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=36.3
Q ss_pred CccccccchHHHHHHHhhCCCCCC---CC---CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQ---QK---GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~---~~---~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+.++|.+.....+.-.|.++.... .. +-.-|.|+|.+|+|||+||+.+.+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~ 258 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEK 258 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHH
Confidence 468999888777777776643100 00 112688999999999999999987
No 306
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.0027 Score=52.54 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-+++|+|..|+|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999998864
No 307
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.58 E-value=0.0027 Score=48.06 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=30.0
Q ss_pred chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc
Q 045522 102 DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV 148 (246)
Q Consensus 102 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 148 (246)
++.+++.+.|...- ..-.+|.+.|.-|.|||||++.+......
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34455555553322 23358999999999999999999886443
No 308
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.57 E-value=0.012 Score=53.36 Aligned_cols=123 Identities=14% Similarity=0.164 Sum_probs=68.5
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH-HH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA-MV 174 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i~ 174 (246)
.++|....++++...+..-. ... ..+.|.|..|+||+++|+.+..... ..-..-+.+++..-. . ..+.. ++
T Consensus 140 ~lig~s~~~~~l~~~i~~~a---~~~-~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~v~v~c~~~~-~-~~~~~~lf 211 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA---PSD-ITVLLLGESGTGKEVLARALHQLSD--RKDKRFVAINCAAIP-E-NLLESELF 211 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh---CCC-CCEEEECCCCcCHHHHHHHHHHhCC--cCCCCeEEEECCCCC-h-HHHHHHhc
Confidence 47887777777776664322 122 3456999999999999999987321 111223344554432 2 22222 21
Q ss_pred HHccC----CCC------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCCh
Q 045522 175 EALDG----HES------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRKG 226 (246)
Q Consensus 175 ~~~~~----~~~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~~ 226 (246)
..-.+ ... .....=.|+||++..........|...+..+. ...+||+||...
T Consensus 212 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 212 GYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred CCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 11100 000 01123358999998876555666777665431 135888888654
No 309
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.56 E-value=0.003 Score=52.09 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|+|.|++|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 310
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.56 E-value=0.0093 Score=45.20 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|+|+|++|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998775
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.55 E-value=0.0014 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 312
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.55 E-value=0.0083 Score=52.21 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccc----cCeEEEEEecCCCCHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK----FDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~ 171 (246)
+.-.++-|+|++|+|||+|+..++........ -..++|++....++...+.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 45689999999999999999887653222111 14899999988888766554
No 313
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0028 Score=51.80 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+.+|+|-|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999883
No 314
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.54 E-value=0.0024 Score=50.89 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=28.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC 159 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 159 (246)
.+++.|+|+.|+|||||++.+.. .....|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 36889999999999999999998 5556675555444
No 315
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.011 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++.++|++|+||||++..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888763
No 316
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.53 E-value=0.0098 Score=54.63 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=49.1
Q ss_pred EEEEEEeeCCchHHHHH-HHHhccccc-----ccccCeEEEEEecCCCCHHHHHHHHHHHccC-CCC-------------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEV-----KRKFDKILWVCVSDTFDEFRVAKAMVEALDG-HES------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~-~~~------------- 182 (246)
.-++|.|..|+|||+|| ..+.+...+ ..+-..++++.+++..+...-+...++..+. ...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46889999999999997 666664322 1234578888888766544334444444331 110
Q ss_pred ----------------CCCCeEEEEEeCCC
Q 045522 183 ----------------RLGKRFLLVLDDVW 196 (246)
Q Consensus 183 ----------------~~~kr~LlVlDdv~ 196 (246)
-+++..|+|+||+-
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 45899999999993
No 317
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.52 E-value=0.0019 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988764
No 318
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.52 E-value=0.0045 Score=50.46 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=29.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcccc-----cccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDE-----VKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
+..|+|++|+|||+++..+..... ....-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999987765555321 1123344444555555556666665555
No 319
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.51 E-value=0.002 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988774
No 320
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.50 E-value=0.013 Score=48.26 Aligned_cols=71 Identities=13% Similarity=0.254 Sum_probs=42.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-CCCCeEEEEEeCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-RLGKRFLLVLDDV 195 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-~~~kr~LlVlDdv 195 (246)
+.-..+.|.|++|+|||+|+..+.... . ..-..++|++.... ...+... +.+++.... ......+.++|++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~ 89 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDAL 89 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcc
Confidence 445799999999999999998765422 1 23457788887443 3444433 444443221 2222345667765
No 321
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.50 E-value=0.004 Score=48.68 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=30.2
Q ss_pred chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 102 DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 102 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
+.+++|.+.| .+ +++.++|..|+|||||.+.+..+.
T Consensus 24 ~g~~~l~~~l--------~~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELL--------KG-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHH--------TT-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHh--------cC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5577888888 33 689999999999999999998854
No 322
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.50 E-value=0.002 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999883
No 323
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0041 Score=53.28 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEE-EEecC-CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILW-VCVSD-TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~~-~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
..+..+.|||++|.|||-||+.++.. ..-+|-.+.- --++. .-....+++++.+.+... ..|.|++|+++.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~--mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~-----~pciifmdeiDA 236 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAAT--MGVNFLKVVSSALVDKYIGESARLIRDMFRYAREV-----IPCIIFMDEIDA 236 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHh--cCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhh-----CceEEeehhhhh
Confidence 44678999999999999999999994 4344421111 00122 124567888877776443 459999999864
Q ss_pred C-----------Cc---cCHHHHHHhhc--CCCCCcEEEEecCChhHH
Q 045522 198 G-----------DY---IKWKPFYHCLK--NGLHESKILVTTRKGSVT 229 (246)
Q Consensus 198 ~-----------~~---~~~~~l~~~l~--~~~~gs~IliTtR~~~va 229 (246)
. +. ..+-+|...+. +.....++|.||...+..
T Consensus 237 igGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 237 IGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 1 10 11222222222 123456889888776553
No 324
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.0086 Score=53.16 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=43.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-CCHHHHHHHHHHHccCCCC--------------CCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-FDEFRVAKAMVEALDGHES--------------RLGK 186 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~--------------~~~k 186 (246)
-.++.++|+.|+||||++.++......+.....+..++.... ....+-+....+.++.+.. +. +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-N 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-C
Confidence 469999999999999999988874322211234555553321 1233344444444433221 23 3
Q ss_pred eEEEEEeCCCCC
Q 045522 187 RFLLVLDDVWDG 198 (246)
Q Consensus 187 r~LlVlDdv~~~ 198 (246)
.-++++|..-..
T Consensus 216 ~DlVLIDTaG~~ 227 (374)
T PRK14722 216 KHMVLIDTIGMS 227 (374)
T ss_pred CCEEEEcCCCCC
Confidence 456778987543
No 325
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.48 E-value=0.0034 Score=48.84 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=27.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC 159 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 159 (246)
.+|-|.|.+|+||||||+.+.. +....-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 5888999999999999999998 4444445566664
No 326
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.48 E-value=0.0021 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 327
>PRK04040 adenylate kinase; Provisional
Probab=96.48 E-value=0.0023 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 328
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.47 E-value=0.0089 Score=54.03 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=46.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHHccCCCC-------------------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEALDGHES------------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~------------------- 182 (246)
..++|+|+.|+|||||++.+.... ..+.++.+-+++.. ...++++.++..-.....
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999998732 12455555565543 344566655443211110
Q ss_pred ----------CCCCeEEEEEeCC
Q 045522 183 ----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~~~kr~LlVlDdv 195 (246)
-.+++.|+++|++
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 4689999999998
No 329
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.47 E-value=0.0073 Score=56.98 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|..|.|||||++.+..-
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988653
No 330
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.46 E-value=0.013 Score=54.56 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=64.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccc-cc-----ccCeEEEEEecC-CC----CH------------HHHHHHHHHHccC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEV-KR-----KFDKILWVCVSD-TF----DE------------FRVAKAMVEALDG 179 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-----~F~~~~wv~~~~-~~----~~------------~~~~~~i~~~~~~ 179 (246)
..|+|+|+.|+|||||.+.+.....- .+ .--.+.|+.-.. .. ++ ...++..+..+.-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 57999999999999999999553211 11 111233333221 10 11 2333333333333
Q ss_pred CCC----------------------CCCCeEEEEEeCCCC-CCccCHHHHHHhhcCCCCCcEEEEecCChhHHhhcCCCc
Q 045522 180 HES----------------------RLGKRFLLVLDDVWD-GDYIKWKPFYHCLKNGLHESKILVTTRKGSVTSMMGSTD 236 (246)
Q Consensus 180 ~~~----------------------~~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~~~~~~~ 236 (246)
+.. +-.+.=+||||.=-+ .|-+..+.|...|..- +|+ ||+.|.++.....++ ++
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va-~~ 505 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVA-TR 505 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhc-ce
Confidence 221 345667899996433 2334455566666543 565 888899988877655 34
Q ss_pred eEeCC
Q 045522 237 IISVK 241 (246)
Q Consensus 237 ~~~l~ 241 (246)
.+.+.
T Consensus 506 i~~~~ 510 (530)
T COG0488 506 IWLVE 510 (530)
T ss_pred EEEEc
Confidence 44443
No 331
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.46 E-value=0.0027 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+.+.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 5568899999999999999998875
No 332
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.45 E-value=0.0061 Score=51.71 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=44.2
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccCe-EEEEEecCCC-CHHHHHHHHHHHccCCC----------C-------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFDK-ILWVCVSDTF-DEFRVAKAMVEALDGHE----------S------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~----------~------- 182 (246)
.-++|.|.+|+|||+|| ..+.+.. +-+. ++++-+++.. ...++.+.+.+.-.... +
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 6665521 1233 3566666543 44555555553321110 0
Q ss_pred ------------CCCCeEEEEEeCCC
Q 045522 183 ------------RLGKRFLLVLDDVW 196 (246)
Q Consensus 183 ------------~~~kr~LlVlDdv~ 196 (246)
-+++..|+++||+-
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 46899999999993
No 333
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.45 E-value=0.0071 Score=55.11 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=49.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHHccCCC----------C---------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEALDGHE----------S--------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~----------~--------- 182 (246)
.-++|.|.+|+|||||+..+.+.... .+-+.++++-+++.. ...++++.+...-.... +
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 57899999999999999888774432 245777777776543 45566666654321110 0
Q ss_pred ----------C-CCCeEEEEEeCC
Q 045522 183 ----------R-LGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~-~~kr~LlVlDdv 195 (246)
- .+++.|+++|++
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 2 389999999999
No 334
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.44 E-value=0.003 Score=49.98 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
....+++|+|+.|+|||||++.+....
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 346799999999999999999988743
No 335
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.44 E-value=0.0019 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
++.+.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998874
No 336
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.44 E-value=0.0022 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999884
No 337
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.43 E-value=0.0038 Score=59.21 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=54.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|.++.++.|...+... +.+.++|++|+||||+|+.+.... -..+++..+|..-+. .+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHH
Confidence 46899998888887766432 368899999999999999988743 223457778866533 35566677776
Q ss_pred HHccCC
Q 045522 175 EALDGH 180 (246)
Q Consensus 175 ~~~~~~ 180 (246)
..++..
T Consensus 101 ~~~G~~ 106 (637)
T PRK13765 101 AGKGKQ 106 (637)
T ss_pred HhcCHH
Confidence 655543
No 338
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.43 E-value=0.0045 Score=53.14 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+|+|.|+.|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5568999999999999999976643
No 339
>PRK08149 ATP synthase SpaL; Validated
Probab=96.43 E-value=0.01 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|..|+|||||+..++..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcC
Confidence 357899999999999999998874
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.43 E-value=0.0022 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999988774
No 341
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.43 E-value=0.0091 Score=51.11 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
...++.++|++|+||||++..+......+..-..+..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45799999999999999998887643322111345556554
No 342
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.42 E-value=0.0034 Score=50.93 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=58.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc---cccccc------------------C
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD---EVKRKF------------------D 153 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F------------------~ 153 (246)
.+++|.+..++.+.-...+ ..-+.++|++|+|||+||+.+-.=. ...+.. .
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~ 74 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIR 74 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceec
Confidence 4688988888887776643 2478899999999999999874310 000100 1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC
Q 045522 154 KILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG 213 (246)
Q Consensus 154 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 213 (246)
.+-|....+..+...++..-. .+....-..-.+=+|+||++-..+....+.|+.++..+
T Consensus 75 ~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 75 QRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp ---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred CCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 111233333333333221100 00000002223447899999877767788888888654
No 343
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.41 E-value=0.017 Score=51.40 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
..-.++.|.|.+|+|||||+.+++... ...-..++|++..+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EE 120 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEE 120 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCc
Confidence 345799999999999999998887633 22335677877543
No 344
>PRK00625 shikimate kinase; Provisional
Probab=96.40 E-value=0.0022 Score=50.81 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999774
No 345
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.39 E-value=0.0036 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=18.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+.|.|.|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47889999999999999988874
No 346
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.38 E-value=0.0034 Score=49.85 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=25.6
Q ss_pred EEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
+.|.|++|+|||+|+..+..... ..-..++|++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence 67899999999999988765322 2224577777643
No 347
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.38 E-value=0.0027 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.5
Q ss_pred EEEEeeCCchHHHHHHHHhccc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~ 146 (246)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999988654
No 348
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.38 E-value=0.0067 Score=57.43 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=47.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
++++|.++.++.+...+... ..+.++|++|+||||+|+.+.+... ...|...+++.-+. .+...++..+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n~~-~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPNPE-DPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeCCC-CCchHHHHHHH
Confidence 57899998888777766432 2556999999999999999987332 12333334333222 23344455555
Q ss_pred HHccC
Q 045522 175 EALDG 179 (246)
Q Consensus 175 ~~~~~ 179 (246)
..++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 55543
No 349
>PRK05439 pantothenate kinase; Provisional
Probab=96.37 E-value=0.0046 Score=53.52 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=22.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999988766
No 350
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0023 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|.|++|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 351
>PRK06217 hypothetical protein; Validated
Probab=96.37 E-value=0.0023 Score=51.01 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=26.0
Q ss_pred EEEEEeeCCchHHHHHHHHhccccccccc--CeEEEEE
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKF--DKILWVC 159 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~ 159 (246)
.|.|.|.+|+||||||+.+....... +| +..+|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeecc
Confidence 48899999999999999998854321 23 5566654
No 352
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.36 E-value=0.024 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
....++.++|++|+||||++..++...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 346899999999999999998887743
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=96.36 E-value=0.062 Score=48.78 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=20.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+|.++|++|+||||++..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999997766655
No 354
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.36 E-value=0.056 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...++.++|++|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999876665
No 355
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.35 E-value=0.0034 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..+|.|.|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999988743
No 356
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.35 E-value=0.0022 Score=51.52 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998874
No 357
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.025 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+++|+|++|+||||++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999887763
No 358
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.34 E-value=0.0028 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.+|+|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 359
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.34 E-value=0.0023 Score=48.61 Aligned_cols=22 Identities=45% Similarity=0.664 Sum_probs=19.9
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|.|.|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 360
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.028 Score=54.86 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=77.6
Q ss_pred chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC
Q 045522 102 DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE 181 (246)
Q Consensus 102 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 181 (246)
....+|.+.+. ...++.|.|+.|.||||-.-+++.+.-. .....+-+.-..-.....+...+.+.++...
T Consensus 53 ~~~~~i~~ai~--------~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIE--------QNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHH--------hCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 45677777773 3469999999999999987655543322 1223444444444556677788888877642
Q ss_pred C-----------------------------------CCCCeEEEEEeCCCCCCccCHHHHHHhh----cCCCCCcEEEEe
Q 045522 182 S-----------------------------------RLGKRFLLVLDDVWDGDYIKWKPFYHCL----KNGLHESKILVT 222 (246)
Q Consensus 182 ~-----------------------------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l----~~~~~gs~IliT 222 (246)
. .-.+--.+|+|.++... ..-+-+..++ +...+.-||||+
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERS-l~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERS-LNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhh-HHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 2 12344479999997753 2223333333 223334799999
Q ss_pred cCCh---hHHhhcCCCceEeCC
Q 045522 223 TRKG---SVTSMMGSTDIISVK 241 (246)
Q Consensus 223 tR~~---~va~~~~~~~~~~l~ 241 (246)
|=.- .++..++...+++++
T Consensus 202 SATld~~rfs~~f~~apvi~i~ 223 (845)
T COG1643 202 SATLDAERFSAYFGNAPVIEIE 223 (845)
T ss_pred ecccCHHHHHHHcCCCCEEEec
Confidence 8664 455555544444443
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.027 Score=43.53 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=58.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-----------------CCHHHHH-HHHHHHccCCCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-----------------FDEFRVA-KAMVEALDGHESRL 184 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----------------~~~~~~~-~~i~~~~~~~~~~~ 184 (246)
.+++|+|+.|.|||||++.+..... .....+++.-... .+.-+.. -.++.. +.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~------l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARA------LL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHH------Hh
Confidence 6899999999999999999987432 2233333321110 1111101 112222 33
Q ss_pred CCeEEEEEeCCCCC-CccCHHHHHHhhcCC-CCCcEEEEecCChhHHhhcCCCceEeC
Q 045522 185 GKRFLLVLDDVWDG-DYIKWKPFYHCLKNG-LHESKILVTTRKGSVTSMMGSTDIISV 240 (246)
Q Consensus 185 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTtR~~~va~~~~~~~~~~l 240 (246)
...-++++|+.-.. |......+...+... ..+..+|++|.+....... .++.+.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 45779999987543 222333444444321 1246788888887776643 2344443
No 362
>PRK13947 shikimate kinase; Provisional
Probab=96.32 E-value=0.0026 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 363
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.31 E-value=0.011 Score=53.71 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=50.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHHccCCC----------C---------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEALDGHE----------S--------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~----------~--------- 182 (246)
.-++|.|.+|+|||+|+..+..... +.+-+.++++-+++.. ...++++.+...-.... +
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 5689999999999999988877533 2234678888887654 44556666554311110 0
Q ss_pred ----------C-CCCeEEEEEeCC
Q 045522 183 ----------R-LGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~-~~kr~LlVlDdv 195 (246)
- ++++.|+++||+
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecCh
Confidence 2 689999999999
No 364
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.31 E-value=0.015 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.7
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998654
No 365
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.30 E-value=0.012 Score=53.26 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=45.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHHccCCCC------------------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEALDGHES------------------ 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~------------------ 182 (246)
-..++|+|..|+|||||++.+++... -+.++++-+++.. .+.++++..+..-+....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987432 1344445555433 344555444443211100
Q ss_pred -----------CCCCeEEEEEeCC
Q 045522 183 -----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 -----------~~~kr~LlVlDdv 195 (246)
-.+++.|+++|++
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 4689999999999
No 366
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.30 E-value=0.014 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||++.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998763
No 367
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.29 E-value=0.0083 Score=48.59 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
.+++|+|+.|.|||||.+.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 689999999999999999887
No 368
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.28 E-value=0.031 Score=50.87 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=66.9
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
.++|....+..+.+.+..-. .....+.|.|..|+||+++|+.+..... ..-...+.+++.... ...+...++.
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~~~i~c~~~~-~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIA----LSQASVLISGESGTGKELIARAIHYNSR--RAKGPFIKVNCAALP-ESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHc----CCCcEEEEEcCCCccHHHHHHHHHHhCC--CCCCCeEEEECCCCC-HHHHHHHhcC
Confidence 47777666766666554332 2235677999999999999999977321 111223334444322 2222222211
Q ss_pred HccCC----CC------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 176 ALDGH----ES------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 176 ~~~~~----~~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
.-.+. .. .....=.|+||++..........|...+.... .+.+||.||..
T Consensus 217 ~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~ 287 (457)
T PRK11361 217 HEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR 287 (457)
T ss_pred CCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCC
Confidence 11000 00 11122368999998876555556666664321 13588888854
No 369
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.28 E-value=0.0032 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37889999999999999999774
No 370
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.28 E-value=0.01 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+.|.|+.|.||||+++.+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998876
No 371
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.27 E-value=0.02 Score=46.24 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999876
No 372
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.27 E-value=0.038 Score=56.22 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=69.7
Q ss_pred chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC
Q 045522 102 DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE 181 (246)
Q Consensus 102 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 181 (246)
...++|.+.|.. ..++.|+|..|+||||..-.+..+.. ......+.+.-..-.....+...+...++...
T Consensus 70 ~~~~~Il~~l~~--------~~vvii~g~TGSGKTTqlPq~lle~~--~~~~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 70 AKREDIAEAIAE--------NQVVIIAGETGSGKTTQLPKICLELG--RGSHGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred HHHHHHHHHHHh--------CceEEEeCCCCCCcHHHHHHHHHHcC--CCCCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 445677777733 35999999999999998865554221 11223333333333345566667777665432
Q ss_pred C------------------------------C-----CCCeEEEEEeCCCCCC-ccCH--HHHHHhhcCCCCCcEEEEec
Q 045522 182 S------------------------------R-----LGKRFLLVLDDVWDGD-YIKW--KPFYHCLKNGLHESKILVTT 223 (246)
Q Consensus 182 ~------------------------------~-----~~kr~LlVlDdv~~~~-~~~~--~~l~~~l~~~~~gs~IliTt 223 (246)
. + -.+--.||||+++... ..++ ..+...+.. .+..++|++|
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEe
Confidence 1 1 1223479999998521 1111 113333332 2457899988
Q ss_pred CCh---hHHhhcCCCceEeC
Q 045522 224 RKG---SVTSMMGSTDIISV 240 (246)
Q Consensus 224 R~~---~va~~~~~~~~~~l 240 (246)
=.- ..+..++....+.+
T Consensus 219 ATld~~~fa~~F~~apvI~V 238 (1283)
T TIGR01967 219 ATIDPERFSRHFNNAPIIEV 238 (1283)
T ss_pred CCcCHHHHHHHhcCCCEEEE
Confidence 653 34444443333433
No 373
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0027 Score=49.31 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcccc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDE 147 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~ 147 (246)
+|.|.|++|+||||+|+.+.++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999998553
No 374
>PRK05922 type III secretion system ATPase; Validated
Probab=96.27 E-value=0.016 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.|+.|+|||||.+.+...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhcc
Confidence 56899999999999999999873
No 375
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.25 E-value=0.027 Score=51.85 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=31.6
Q ss_pred cchHHHHHHHhh--CCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 101 VDEKNELLSKLL--CESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 101 ~~~~~~l~~~L~--~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+.+.++..||. ..- ....+.+++.|.||+|+||||-++.+...
T Consensus 88 kkKI~eVk~WL~~~~~~-~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEF-TPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HHhHHHHHHHHHHHHHh-ccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 345667777876 100 01245679999999999999999988774
No 376
>PRK04328 hypothetical protein; Provisional
Probab=96.25 E-value=0.013 Score=49.27 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=42.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-CCCCeEEEEEeC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-RLGKRFLLVLDD 194 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-~~~kr~LlVlDd 194 (246)
+.-+++.|.|++|+|||+|+.++.... . ..-..++|++..+ ++..+.+ .+++++.... ......|.++|-
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee--~~~~i~~-~~~~~g~d~~~~~~~~~l~iid~ 91 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEE--HPVQVRR-NMRQFGWDVRKYEEEGKFAIVDA 91 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeC--CHHHHHH-HHHHcCCCHHHHhhcCCEEEEec
Confidence 456899999999999999998765522 2 2345778888766 3344433 3445543321 222334555553
No 377
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.24 E-value=0.0039 Score=47.67 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
++|.|+|+.|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4799999999999999999998432 24455555666555
No 378
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.021 Score=51.04 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=49.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccc--cccCeEEEEEecCCC-CHHHHHHHHHHHccCCCC-------------CC
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVK--RKFDKILWVCVSDTF-DEFRVAKAMVEALDGHES-------------RL 184 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-------------~~ 184 (246)
...++.++|+.|+||||.+..++...... ..-..+..+++.... ....-+....+.++.+.. ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999998877643321 122345555544311 112224444444433311 11
Q ss_pred CCeEEEEEeCCCCCCcc--CHHHHHHhhcC
Q 045522 185 GKRFLLVLDDVWDGDYI--KWKPFYHCLKN 212 (246)
Q Consensus 185 ~kr~LlVlDdv~~~~~~--~~~~l~~~l~~ 212 (246)
.+.-++++|..-..... .+.++...+..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 34568888887554211 23455555543
No 379
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.24 E-value=0.015 Score=51.54 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=24.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEV 148 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 148 (246)
...+-+-|||..|.|||.|+..+|+...+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 45678999999999999999999986543
No 380
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.24 E-value=0.014 Score=52.72 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=47.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHHccCCCC------------------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEALDGHES------------------ 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~------------------ 182 (246)
-..++|.|..|+|||||.+.+++... -+.++++-+++.. ...++++..+..-.....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999998432 2456777666543 344555444332111100
Q ss_pred -----------CCCCeEEEEEeCC
Q 045522 183 -----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 -----------~~~kr~LlVlDdv 195 (246)
-.+++.|+++|++
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 4689999999999
No 381
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.23 E-value=0.0032 Score=49.71 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=18.4
Q ss_pred EEEEeeCCchHHHHHHHHhccc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~ 146 (246)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999987754
No 382
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0031 Score=49.54 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=18.2
Q ss_pred EEEEEeeCCchHHHHHHHHh
Q 045522 124 IISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~ 143 (246)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998876
No 383
>PRK14530 adenylate kinase; Provisional
Probab=96.23 E-value=0.0032 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEEeeCCchHHHHHHHHhccc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.|.|+|++|+||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997743
No 384
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.22 E-value=0.0026 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.6
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998874
No 385
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.21 E-value=0.011 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.|..|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999988874
No 386
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.21 E-value=0.0043 Score=54.58 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=37.0
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+-..++|.++.+..|+..+.. +.+.-+.|.|..|+||||+|+.+++
T Consensus 15 pf~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 345799999888888887755 3455677999999999999998855
No 387
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.012 Score=52.70 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=41.2
Q ss_pred CCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 119 QKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 119 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.+.-|--.++||||.|||++..++++... |+. .=+.++...+-.+ ++.++.. ...+.+|||.|++-
T Consensus 232 kawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n~d-Lr~LL~~-------t~~kSIivIEDIDc 297 (457)
T KOG0743|consen 232 KAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLDSD-LRHLLLA-------TPNKSILLIEDIDC 297 (457)
T ss_pred cchhccceeeCCCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCcHH-HHHHHHh-------CCCCcEEEEeeccc
Confidence 35567889999999999999999999442 321 1233333322223 3334333 34567788888753
No 388
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.20 E-value=0.023 Score=49.84 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=34.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAM 173 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 173 (246)
..++|.|..|+|||+|++.+.+.. +-+.++++.+++.. ...++++++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 578999999999999999998843 23578888887654 344555543
No 389
>PTZ00494 tuzin-like protein; Provisional
Probab=96.20 E-value=0.036 Score=50.16 Aligned_cols=123 Identities=18% Similarity=0.113 Sum_probs=78.0
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 92 IDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 92 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
.....++.|+.+-..+-+.|.+-+ ....+++.+.|.-|.||++|.+.....+.. ...+|.+... ++-+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHH
Confidence 345678999988777777776544 367899999999999999999988875443 4556776544 33466
Q ss_pred HHHHHccCCCC--------------------CCCCeEEEEEeCCCCCC-ccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 172 AMVEALDGHES--------------------RLGKRFLLVLDDVWDGD-YIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 172 ~i~~~~~~~~~--------------------~~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
.+.+.++.+.. ..++..|||+---.-.+ ...+.+... |.....-|.|++--=-+
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplE 511 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMK 511 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHh
Confidence 77777776643 45677788776432210 112333222 22223456777654433
No 390
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.19 E-value=0.019 Score=47.78 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=34.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 172 (246)
+.-+++.|.|++|+|||+||.++.... . ..-..++|++... ++..+++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 556899999999999999997765421 1 2345788888755 44455554
No 391
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.19 E-value=0.019 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|+|..|.|||||++.+...
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999998874
No 392
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.18 E-value=0.018 Score=54.85 Aligned_cols=44 Identities=27% Similarity=0.222 Sum_probs=33.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..++|.+..+..+.-.+... ...-|.|.|..|+||||+|+.+..
T Consensus 4 ~~ivGq~~~~~al~~~av~~------~~g~vli~G~~GtgKs~lar~l~~ 47 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP------RIGGVLIRGEKGTAKSTAARGLAA 47 (633)
T ss_pred chhcChHHHHHHHHHHhhCC------CCCeEEEEcCCCCcHHHHHHHHHH
Confidence 46899887777766555442 234599999999999999998865
No 393
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.015 Score=55.34 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=55.2
Q ss_pred CccccccchHHHHHHHhhCCCC------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC----
Q 045522 95 EEICGRVDEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF---- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~---- 164 (246)
.++=|.++.+.+|.+.+.-.-. .+-.+.+-|.++|++|+|||-||++|+.+. .-.| +++-.+-
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--sL~F-----lSVKGPELLNM 744 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--SLNF-----LSVKGPELLNM 744 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--eeeE-----EeecCHHHHHH
Confidence 3567788888888775533110 011335678899999999999999999843 2233 3432210
Q ss_pred ---CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 ---DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 ---~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
..++-.+++.+.+ .+.+.|.|++|.+++
T Consensus 745 YVGqSE~NVR~VFerA-----R~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 745 YVGQSEENVREVFERA-----RSAAPCVIFFDELDS 775 (953)
T ss_pred HhcchHHHHHHHHHHh-----hccCCeEEEeccccc
Confidence 0112222233332 345899999999976
No 394
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.18 E-value=0.022 Score=45.48 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=52.9
Q ss_pred EEEEEeeCCchHHHHHHHHhccccc------------c-cccCeEEEEEecCCC-------CHHHHHHHHHHHccCCCCC
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEV------------K-RKFDKILWVCVSDTF-------DEFRVAKAMVEALDGHESR 183 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~------------~-~~F~~~~wv~~~~~~-------~~~~~~~~i~~~~~~~~~~ 183 (246)
++.|.|+.|.||||+.+.+.-.... + ..|+..+ ...+..- +...-..++...+. .
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il-~~~~~~d~~~~~~s~fs~~~~~l~~~l~----~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIF-TRIGASDSLAQGLSTFMVEMKETANILK----N 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEE-EEeCCCCchhccccHHHHHHHHHHHHHH----h
Confidence 4679999999999999887632110 0 0111111 1121111 11111122222221 1
Q ss_pred CCCeEEEEEeCCCCCCc-cCHHH----HHHhhcCCCCCcEEEEecCChhHHhhc
Q 045522 184 LGKRFLLVLDDVWDGDY-IKWKP----FYHCLKNGLHESKILVTTRKGSVTSMM 232 (246)
Q Consensus 184 ~~kr~LlVlDdv~~~~~-~~~~~----l~~~l~~~~~gs~IliTtR~~~va~~~ 232 (246)
.+++.|+++|+.-..-. .+-.. +...+.. ..++.+|++|.+.++...+
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 24788999999865411 11112 2222322 1367899999998877654
No 395
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.18 E-value=0.014 Score=53.04 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=44.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC----------C---------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE----------S--------- 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----------~--------- 182 (246)
-..++|.|..|+|||||++.+...... -..+++..-.......++.+.+...-.... +
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 368899999999999999999874322 123333332333344455554443311100 0
Q ss_pred ----------CCCCeEEEEEeCC
Q 045522 183 ----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~~~kr~LlVlDdv 195 (246)
-++++.|+++|++
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 4589999999998
No 396
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.16 E-value=0.01 Score=53.99 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=48.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHHccCCC----------C---------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEALDGHE----------S--------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~----------~--------- 182 (246)
.-++|.|.+|+|||||+..+........ =+.++++-+++.. .+.++++.+...-.... +
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999988766432211 1456667675543 45566666655321110 0
Q ss_pred ----------C-CCCeEEEEEeCC
Q 045522 183 ----------R-LGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~-~~kr~LlVlDdv 195 (246)
- ++++.||++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 3 899999999998
No 397
>PF13245 AAA_19: Part of AAA domain
Probab=96.15 E-value=0.0076 Score=40.96 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=16.6
Q ss_pred EEEEEEeeCCchHHHH-HHHHhc
Q 045522 123 HIISIVGMGGIGKNTL-AQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtL-a~~v~~ 144 (246)
+++.|.|++|.|||++ ++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 5788899999999954 444444
No 398
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.15 E-value=0.0038 Score=48.68 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=17.2
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999873
No 399
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.15 E-value=0.014 Score=52.69 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=44.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC-CCCHHHHHHHHHHHccCC----------CC--------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD-TFDEFRVAKAMVEALDGH----------ES-------- 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~~----------~~-------- 182 (246)
-..++|+|..|+|||||++.+.+.. +.+...+..++. .....+++.+....-... .+
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3588999999999999999988733 223344444443 334445555543211000 00
Q ss_pred -----------CCCCeEEEEEeCC
Q 045522 183 -----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 -----------~~~kr~LlVlDdv 195 (246)
-++++.||++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 4689999999998
No 400
>PRK13949 shikimate kinase; Provisional
Probab=96.15 E-value=0.0038 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEeeCCchHHHHHHHHhccc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
-|.|+|++|+||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998843
No 401
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.15 E-value=0.0051 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.051 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 403
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.14 E-value=0.019 Score=55.46 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=54.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH-------HHHHccCCCC--------CCCCe
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA-------MVEALDGHES--------RLGKR 187 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-------i~~~~~~~~~--------~~~kr 187 (246)
++..|.|.+|+||||+++.+......... ...+++..+.......+.+. +-+-++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 48889999999999999988774322211 13455554443222222211 1111110000 01234
Q ss_pred EEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh
Q 045522 188 FLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS 227 (246)
Q Consensus 188 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~ 227 (246)
-+||+|++.--+...+..|...++ .|++||+.-=..+
T Consensus 418 ~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvGD~~Q 454 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSLLAALP---DHARLLLVGDTDQ 454 (720)
T ss_pred CEEEEeccccCCHHHHHHHHHhCC---CCCEEEEECcccc
Confidence 599999997664444444544443 5688887654333
No 404
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.14 E-value=0.0038 Score=47.87 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.1
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 405
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.0051 Score=49.73 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....++.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999998873
No 406
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.13 E-value=0.016 Score=55.79 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998754
No 407
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.12 E-value=0.015 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+...
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999988654
No 408
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.11 E-value=0.064 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+.|.|+.|.|||||++.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc
Confidence 368999999999999999988754
No 409
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.11 E-value=0.013 Score=46.77 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEeeCCchHHHHHHHHhccc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998743
No 410
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.10 E-value=0.011 Score=51.81 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=27.7
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 105 NELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 105 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+++.+.... ....+|+|.|++|+|||||+..+...
T Consensus 43 ~~l~~~~~~~~----~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 43 QELLDALLPHT----GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHhhcC----CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44555554322 55789999999999999999887663
No 411
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.09 E-value=0.041 Score=46.51 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=28.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
-.++.|.|++|+||||++..+..... ..+-..++|+++..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~ 69 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE 69 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc
Confidence 35888999999999999988766332 22134677887654
No 412
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.07 E-value=0.041 Score=42.81 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999988764
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.041 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++.++|+.|+||||++.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999999888763
No 414
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.06 E-value=0.02 Score=48.74 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=41.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
+.-+++=|+|+.|.||||||.+++- ..+..-..++|++..+.+++..+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH
Confidence 6678999999999999999988776 4455556899999999888876544
No 415
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.05 E-value=0.0061 Score=56.50 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=41.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEE
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC 159 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 159 (246)
++.--.+.++++..||..... +....+++.+.||+|+||||.++.++++. .|+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 455456678888888865332 22445799999999999999999998853 345555653
No 416
>PRK14527 adenylate kinase; Provisional
Probab=96.05 E-value=0.0051 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.3
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
...+|.+.|++|+||||+|+.+....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999987643
No 417
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.04 E-value=0.0089 Score=50.93 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=26.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV 160 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 160 (246)
...+++.++|++|+||||++..++... ...-..+..++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeC
Confidence 446899999999999999988777633 222234555544
No 418
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.04 E-value=0.018 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+..-
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999988654
No 419
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.037 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+...|.++.||+|+|||||.+.+-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 5568999999999999999987744
No 420
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0044 Score=54.63 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=40.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC--CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.-+-|.++||+|.|||-||++|+. +-.-.|-.+.--.+.... +.+++++.+++-.. ..-...|+||.++.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvAT--Ec~tTFFNVSsstltSKwRGeSEKlvRlLFemAR-----fyAPStIFiDEIDs 315 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVAT--ECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMAR-----FYAPSTIFIDEIDS 315 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHH--hhcCeEEEechhhhhhhhccchHHHHHHHHHHHH-----HhCCceeehhhHHH
Confidence 346688999999999999999998 333334222111111111 23445544444321 12345688888753
No 421
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0051 Score=51.13 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.|+|+|++|+|||||.+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998864
No 422
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.02 E-value=0.13 Score=40.56 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.+.|+.|+|||||.+.+...
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhc
Confidence 3466789999999999999998754
No 423
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.0047 Score=50.05 Aligned_cols=26 Identities=46% Similarity=0.525 Sum_probs=22.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDE 147 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 147 (246)
..+|+|-||=|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999988543
No 424
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.01 E-value=0.012 Score=43.96 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=34.3
Q ss_pred CccccccchHHHHHHH----hhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSK----LLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~----L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|..-..+.+++. +... ...+.-|++..|++|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3577766555555444 4333 3467789999999999999988877765
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.01 E-value=0.01 Score=48.91 Aligned_cols=42 Identities=31% Similarity=0.388 Sum_probs=26.9
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
.|+|+|-||+||||+|..+......++.| .++=|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 58999999999999998855433222223 3444555444443
No 426
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.00 E-value=0.017 Score=53.32 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.+++|.+..++.+.-.+. .-..+.++|++|+||||||+.+..
T Consensus 191 ~~dv~Gq~~~~~al~~aa~--------~g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAA--------GGHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred HHHhcCcHHHHhhhhhhcc--------CCCEEEEEecCCCCHHHHHHHHhc
Confidence 3567887766655444432 225789999999999999998875
No 427
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.00 E-value=0.0043 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988774
No 428
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.00 E-value=0.026 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+...
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988764
No 429
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.00 E-value=0.016 Score=52.81 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=48.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccccccc--CeEEEEEecCCC-CHHHHHHHHHHHccCCCC-----------------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKF--DKILWVCVSDTF-DEFRVAKAMVEALDGHES----------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~----------------- 182 (246)
.-++|.|..|+|||+|+..+.+.....+.+ ..++++-+++.. ...++++.+...-.....
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 568899999999999999988854332111 156666666543 455666666543211110
Q ss_pred -------------CCCCeEEEEEeCC
Q 045522 183 -------------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 -------------~~~kr~LlVlDdv 195 (246)
-++++.||++||+
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 2689999999998
No 430
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.00 E-value=0.0061 Score=44.29 Aligned_cols=21 Identities=38% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
..++|.|+.|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999876
No 431
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=96.00 E-value=0.015 Score=53.04 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=45.2
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccC-eEEEEEecCCC-CHHHHHHHHHHHccCCCC-----------------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFD-KILWVCVSDTF-DEFRVAKAMVEALDGHES----------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~----------------- 182 (246)
.-++|.|..|+|||+|| ..+.+.. .-+ .++++.+++.. ++.++.+.+...-.....
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 56889999999999995 5566531 223 33777776544 445555555443211100
Q ss_pred ------------CCCCeEEEEEeCCC
Q 045522 183 ------------RLGKRFLLVLDDVW 196 (246)
Q Consensus 183 ------------~~~kr~LlVlDdv~ 196 (246)
-++++.|+|+||+-
T Consensus 218 p~~a~aiAEyfr~~G~~VLlv~DdlT 243 (485)
T CHL00059 218 PYTGAALAEYFMYRGRHTLIIYDDLS 243 (485)
T ss_pred HHHHhhHHHHHHHcCCCEEEEEcChh
Confidence 56899999999993
No 432
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.99 E-value=0.0062 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998874
No 433
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.99 E-value=0.063 Score=46.22 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++++.|+.|.|||||.+.+..-
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999998764
No 434
>PRK13975 thymidylate kinase; Provisional
Probab=95.98 E-value=0.0055 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999844
No 435
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.071 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||++.++..
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 436
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.98 E-value=0.006 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=23.5
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++++|+++|+.|+|||||...+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999888764
No 437
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.97 E-value=0.023 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.|+.|.|||||.+.+..-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 438
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.97 E-value=0.026 Score=53.29 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+...
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccC
Confidence 468999999999999999988653
No 439
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.97 E-value=0.0062 Score=45.77 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.+++|+|+.|+|||||.+.+....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 589999999999999999987743
No 440
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.96 E-value=0.024 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+..-
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988653
No 441
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=95.96 E-value=0.023 Score=55.56 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHHhhCCCCCC---------------CCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQ---------------QKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
|.++|.+..++.|+-.|+++.... -.+-.-|.|+|.+|+|||+||+.+.+
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ 514 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHL 514 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHH
Confidence 468999999998888887764210 01123788999999999999999887
No 442
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.96 E-value=0.0065 Score=50.69 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=20.8
Q ss_pred EEeeCCchHHHHHHHHhcccccccccCeEEEEE
Q 045522 127 IVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVC 159 (246)
Q Consensus 127 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 159 (246)
|+||+|+||||+++.+.+.... .-..++-|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~--~~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES--NGRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT--T-S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHh--ccCCceEEE
Confidence 6899999999999998885433 223344444
No 443
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.95 E-value=0.018 Score=46.13 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998744
No 444
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.94 E-value=0.0086 Score=51.10 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=62.9
Q ss_pred ccccccchHHHHHHHhhCC-CCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc---cccC--eEEEEEecCCCCHH--
Q 045522 96 EICGRVDEKNELLSKLLCE-SSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK---RKFD--KILWVCVSDTFDEF-- 167 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~~~~~~~~~-- 167 (246)
.++|.--..+.++..+.+- ..+...+.-+++.+|.+|+||.-.++.++++.... ..|- .++-...++...++
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 4556444444444444321 11134777899999999999999998887754221 1120 11111222222222
Q ss_pred --HHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhc
Q 045522 168 --RVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLK 211 (246)
Q Consensus 168 --~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 211 (246)
++.+.+...+ ..-+|.|+|+|+++.....-.+.|...+.
T Consensus 163 k~eL~~~v~~~v-----~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 163 KEELKNRVRGTV-----QACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHH-----HhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 3333444433 24589999999999887566666666554
No 445
>PLN02200 adenylate kinase family protein
Probab=95.92 E-value=0.0066 Score=50.53 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.3
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|.|.|++|+||||+|+.+...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988773
No 446
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.92 E-value=0.056 Score=47.13 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=46.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc-------cc---cc----ccCeEEEEE--ecCCCCHHHHHHHHHHHccCCCCCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD-------EV---KR----KFDKILWVC--VSDTFDEFRVAKAMVEALDGHESRLGK 186 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~-------~~---~~----~F~~~~wv~--~~~~~~~~~~~~~i~~~~~~~~~~~~k 186 (246)
..+.|.|..|+||||+++.+.... ++ .+ .+...-|+. .+...+...++...+ +-.
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aL---------R~~ 219 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTL---------RMR 219 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHh---------cCC
Confidence 578899999999999999887531 00 00 011111222 233445555554433 334
Q ss_pred eEEEEEeCCCCCCccCHHHHHHhhcCCCCCc
Q 045522 187 RFLLVLDDVWDGDYIKWKPFYHCLKNGLHES 217 (246)
Q Consensus 187 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 217 (246)
.=.||+..+... +.+. +...+..+..|+
T Consensus 220 PD~IivGEiR~~--Ea~~-~l~A~~tGh~G~ 247 (319)
T PRK13894 220 PDRILVGEVRGP--EALD-LLMAWNTGHEGG 247 (319)
T ss_pred CCEEEEeccCCH--HHHH-HHHHHHcCCCce
Confidence 556899999765 4454 334444454454
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.91 E-value=0.051 Score=49.21 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=60.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-------------------
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES------------------- 182 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------------- 182 (246)
-..++|.|..|+|||||++.++..... ...++.+.-....+..+++...+..-+....
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999874321 2223332222335555665555444221110
Q ss_pred ----------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-CCCcEEEEecCChhHHhhcC
Q 045522 183 ----------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-LHESKILVTTRKGSVTSMMG 233 (246)
Q Consensus 183 ----------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTtR~~~va~~~~ 233 (246)
-+++..||++|++-+.- ....++...+... ..|--..+.|....++...+
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a-~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFA-DARRSVDIAVKELPIGGKTLLMESYMKKLLERSG 293 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHH-HHHHHHHHHhcCCCCCCeeeeeeccchhHHHHhc
Confidence 35899999999985431 1223333333211 12445556565666655543
No 448
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.0077 Score=47.92 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
-..+.|.||+|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688899999999999999999854
No 449
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.90 E-value=0.065 Score=53.36 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=50.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHH----------HHHHHHHHHccCCCCCCCCeEEEEEe
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEF----------RVAKAMVEALDGHESRLGKRFLLVLD 193 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~----------~~~~~i~~~~~~~~~~~~kr~LlVlD 193 (246)
++.|.|.+|+||||+.+.+..-.+ .. ...+........... ..+..++..+......-.+.-+||+|
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e--~~-G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWE--AA-GYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH--Hc-CCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEE
Confidence 667999999999999877655221 11 122222222111111 11111121111111123456699999
Q ss_pred CCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhH
Q 045522 194 DVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSV 228 (246)
Q Consensus 194 dv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v 228 (246)
++.-.+...+..|..... ..|++||+.-=..++
T Consensus 441 EASMv~~~~m~~LL~~a~--~~garvVLVGD~~QL 473 (988)
T PRK13889 441 EAGMVGTRQLERVLSHAA--DAGAKVVLVGDPQQL 473 (988)
T ss_pred CcccCCHHHHHHHHHhhh--hCCCEEEEECCHHHc
Confidence 986654344444433222 357888887644444
No 450
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.90 E-value=0.02 Score=52.52 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=47.5
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccCe-EEEEEecCCC-CHHHHHHHHHHHccCCCC-----------------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFDK-ILWVCVSDTF-DEFRVAKAMVEALDGHES----------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~~----------------- 182 (246)
.-++|.|..|+|||||| ..+.+.. .-+. ++++-+++.. ...++++.+...-.....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 56889999999999996 5777732 2343 6777777654 455566655543211110
Q ss_pred ------------CCCCeEEEEEeCCC
Q 045522 183 ------------RLGKRFLLVLDDVW 196 (246)
Q Consensus 183 ------------~~~kr~LlVlDdv~ 196 (246)
-++++.|||+||+-
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlT 264 (497)
T TIGR03324 239 PYAATSIGEHFMEQGRDVLIVYDDLT 264 (497)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcChh
Confidence 46899999999993
No 451
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.90 E-value=0.03 Score=43.89 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=17.5
Q ss_pred EEEEEEeeCCchHHH-HHHHHhc
Q 045522 123 HIISIVGMGGIGKNT-LAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTt-La~~v~~ 144 (246)
..+.|.|+.|+|||+ ++..++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 678899999999999 4455554
No 452
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.90 E-value=0.026 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+...
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999988653
No 453
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.89 E-value=0.024 Score=54.69 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+..-
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999988653
No 454
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.89 E-value=0.088 Score=45.55 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|.|+|.+|+|||++.+.+...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC
Confidence 45567889999999999999998864
No 455
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.88 E-value=0.019 Score=52.18 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=48.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-CCHHHHHHHHHHHccCCC----------C---------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-FDEFRVAKAMVEALDGHE----------S--------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~----------~--------- 182 (246)
.-++|.|.+|+|||+|+..+...... ++=..++++-+++. ..+.++++.+...-.... +
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 56899999999999999988764322 22246677777654 345666666654321110 0
Q ss_pred ----------C-CCCeEEEEEeCC
Q 045522 183 ----------R-LGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~-~~kr~LlVlDdv 195 (246)
- ++++.||++|++
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecch
Confidence 3 689999999999
No 456
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.88 E-value=0.024 Score=51.10 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=43.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-CCHHHHHHHHHHHccCC----------CC---------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-FDEFRVAKAMVEALDGH----------ES--------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~----------~~--------- 182 (246)
..++|.|..|+|||||++.+...... +..+...++.. -.+.++.+.....-... .+
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~~----~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~ 213 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTEA----DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF 213 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC----CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999988873321 23333444443 23444444443331110 00
Q ss_pred ----------CCCCeEEEEEeCC
Q 045522 183 ----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~~~kr~LlVlDdv 195 (246)
-++++.|+++||+
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 214 YATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCh
Confidence 4689999999998
No 457
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.88 E-value=0.0061 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.-|.++|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568899999999999999988764
No 458
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.88 E-value=0.0064 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=19.7
Q ss_pred EEEEEeeCCchHHHHHHHHhccc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
-|.++|.+|+|||||+..+..+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999887643
No 459
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.87 E-value=0.026 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.-..++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999988763
No 460
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.87 E-value=0.059 Score=42.00 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=57.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccc-----------cccCeEEEE----EecCCCC-HHHHHHHHHHHccCCCCCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVK-----------RKFDKILWV----CVSDTFD-EFRVAKAMVEALDGHESRLGK 186 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~F~~~~wv----~~~~~~~-~~~~~~~i~~~~~~~~~~~~k 186 (246)
++..|+|+.|.|||++.+.+.--.-.. ..+....|- ......+ -..-...+...+... ..++
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~--~~~~ 99 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALA--SLKP 99 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhc--CCCC
Confidence 689999999999999998752211111 111111111 0000010 011122222222110 1136
Q ss_pred eEEEEEeCCCCC-CccCHHHHHHhhcCC-CCCcEEEEecCChhHHhhcCCCceEeCC
Q 045522 187 RFLLVLDDVWDG-DYIKWKPFYHCLKNG-LHESKILVTTRKGSVTSMMGSTDIISVK 241 (246)
Q Consensus 187 r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTtR~~~va~~~~~~~~~~l~ 241 (246)
+.++++|+.... +...-..+...+... ..++.+|++|.+.++.... +..+.+.
T Consensus 100 ~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~--d~~~~l~ 154 (162)
T cd03227 100 RPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA--DKLIHIK 154 (162)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh--hhEEEEE
Confidence 789999998664 212223333333321 1267899999998887653 4444443
No 461
>PRK14532 adenylate kinase; Provisional
Probab=95.86 E-value=0.0058 Score=48.78 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.0
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|.+.|++|+||||+|+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999999999873
No 462
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.86 E-value=0.033 Score=53.91 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.-..++|+|+.|.|||||++.+..-.
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999887643
No 463
>PRK13948 shikimate kinase; Provisional
Probab=95.86 E-value=0.007 Score=48.40 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+.|.++|+.|+||||+++.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999873
No 464
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.85 E-value=0.024 Score=51.51 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=42.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-CCHHHHHHHHHHHccCCC----------C---------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-FDEFRVAKAMVEALDGHE----------S--------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~----------~--------- 182 (246)
..++|+|..|+|||||++.+..... .+.++...++.. .+...+...+...-.... +
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 5689999999999999999877321 123333333332 234444444443321110 0
Q ss_pred ----------CCCCeEEEEEeCC
Q 045522 183 ----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------~~~kr~LlVlDdv 195 (246)
-++++.||++|++
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEecch
Confidence 4689999999998
No 465
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.85 E-value=0.024 Score=51.51 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=50.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccc-----------ccccCeEEEEEecCCCCHHHHHHHHHHHcc-CCCC--------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEV-----------KRKFDKILWVCVSDTFDEFRVAKAMVEALD-GHES-------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~-----------~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~-~~~~-------- 182 (246)
.-++|.|.+|+|||||+..+.+.... ++.-..++++.+++.....+.+...+...+ ....
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 56889999999999999988875431 001115667777777666666666666544 1110
Q ss_pred ----------------------CCCCeEEEEEeCC
Q 045522 183 ----------------------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------------------~~~kr~LlVlDdv 195 (246)
-++++.|+++||+
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 2579999999999
No 466
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.85 E-value=0.0084 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+.+.|+|++|+||+||+..+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999884
No 467
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.85 E-value=0.0059 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 468
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.84 E-value=0.014 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|+|.|++|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55789999999999999999887663
No 469
>PRK05973 replicative DNA helicase; Provisional
Probab=95.84 E-value=0.032 Score=46.49 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=26.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
..-.++.|.|.+|+|||+|+..+..... + +-..+++++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEe
Confidence 3446899999999999999987655321 2 22345555543
No 470
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.83 E-value=0.0065 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|+|+.|.|||||++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999874
No 471
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.83 E-value=0.031 Score=50.99 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
..-.++.|.|.+|+|||||+.++..... ..-..++|++..+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee 118 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE 118 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc
Confidence 3457999999999999999988876332 2224677777654
No 472
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.83 E-value=0.032 Score=46.16 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT 163 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 163 (246)
+.-+++.|+|++|+|||+|+.++.... . .+-..++|++..+.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC
Confidence 556899999999999999998875421 1 22357778877543
No 473
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.82 E-value=0.0078 Score=53.66 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=32.7
Q ss_pred ccccccchHHHHHHHhhCCCCC-----------CCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 96 EICGRVDEKNELLSKLLCESSE-----------QQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+..|-..+...|.+.+...... ....-.+++|+|.+|.||||+.+.+...
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 4555566666666655332110 1122357999999999999999988764
No 474
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.82 E-value=0.023 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|..|+|||||++.+...
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 467999999999999999988774
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.82 E-value=0.011 Score=47.18 Aligned_cols=22 Identities=36% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+.|+|+.|.|||||++.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999998875
No 476
>PRK06761 hypothetical protein; Provisional
Probab=95.82 E-value=0.014 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
++|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999854
No 477
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.81 E-value=0.0081 Score=43.88 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.4
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|+|+|++|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999874
No 478
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.81 E-value=0.037 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|.|..|+|||||.+.+...
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~ 168 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARG 168 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCC
Confidence 357899999999999999998873
No 479
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.015 Score=54.38 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCCccccccchHHHHHH---HhhCCCCC---CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCe---EE----EE
Q 045522 92 IDEEEICGRVDEKNELLS---KLLCESSE---QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDK---IL----WV 158 (246)
Q Consensus 92 ~~~~~~vGr~~~~~~l~~---~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~~----wv 158 (246)
+.-.+.-|.++..+++.+ .|.....- +..-.+-+.++|++|.|||.||+++..+..+ +|-. .- +|
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PFf~iSGS~FVemfV 224 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PFFSISGSDFVEMFV 224 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cceeccchhhhhhhc
Confidence 344578898887666554 55433210 1123467889999999999999999995544 4311 11 22
Q ss_pred EecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 159 CVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.++. .-.+++..+. .+.-++++++|.++.
T Consensus 225 GvGA-----sRVRdLF~qA-----kk~aP~IIFIDEiDA 253 (596)
T COG0465 225 GVGA-----SRVRDLFEQA-----KKNAPCIIFIDEIDA 253 (596)
T ss_pred CCCc-----HHHHHHHHHh-----hccCCCeEEEehhhh
Confidence 2222 1122333333 233579999998864
No 480
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.80 E-value=0.0077 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|+|+|++|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
No 481
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.80 E-value=0.011 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=18.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+++.+.|-||+||||+|-...-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5788999999999999976654
No 482
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.79 E-value=0.0072 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.++.|+|++|+|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 36899999999999999998865
No 483
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.79 E-value=0.024 Score=47.03 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV 160 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 160 (246)
+.-.++.|.|++|+||||||.++.... .+.. ..+++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~ 60 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVST 60 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeC
Confidence 334699999999999999985554422 1222 34566663
No 484
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.06 Score=45.35 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=73.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccc----------------c-ccccCeEEEEE-ecCCCCHHHHHHHHHHHccCCCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDE----------------V-KRKFDKILWVC-VSDTFDEFRVAKAMVEALDGHESRL 184 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~----------------~-~~~F~~~~wv~-~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (246)
..+.++|+.|+||.++|..++...- + ...+.-..|+. .......++ .+++.+.+.......
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~-ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKED-ALSIINKLNRPSVES 86 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHH-HHHHHHHHccCchhc
Confidence 5677899999999999976653210 0 11122233332 222333333 334555555332223
Q ss_pred CCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC-hhHHhhcCC-CceEeCCCC
Q 045522 185 GKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK-GSVTSMMGS-TDIISVKEL 243 (246)
Q Consensus 185 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~-~~va~~~~~-~~~~~l~~L 243 (246)
+++-++|+|+++......+..|...+....+++.+|++|.+ ..+...+.. ...+.+.++
T Consensus 87 ~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 56677899999888777889999999988788887777765 355444433 455555544
No 485
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.78 E-value=0.0087 Score=50.48 Aligned_cols=27 Identities=41% Similarity=0.518 Sum_probs=22.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
....+|.++||+|+||||+.+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 455678889999999999999998854
No 486
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.77 E-value=0.03 Score=54.17 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=45.5
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-----------------
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES----------------- 182 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----------------- 182 (246)
+.-+++-|+|++|+|||||+..++... ...-..++|++..+.++.. .+++++....
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 456889999999999999997755422 2233567888766655532 3334433211
Q ss_pred ----CCCCeEEEEEeCCC
Q 045522 183 ----RLGKRFLLVLDDVW 196 (246)
Q Consensus 183 ----~~~kr~LlVlDdv~ 196 (246)
.+++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 23456799999875
No 487
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.011 Score=50.30 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=54.6
Q ss_pred ccccccchHHHHHHHhhCCCCC-------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC--CCH
Q 045522 96 EICGRVDEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT--FDE 166 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~ 166 (246)
++=|.+..+++|.+...-.-.+ +-....-|.++|.+|.|||-||++++| .....|-.+.=-.+-+. -+-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATFlRvvGseLiQkylGdG 263 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATFLRVVGSELIQKYLGDG 263 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhhhhhhhHHHHHHHhccc
Confidence 4556777788887765322110 224456788999999999999999999 55555533221100000 012
Q ss_pred HHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 167 FRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
..+.+++++.... ....++++|.++
T Consensus 264 pklvRqlF~vA~e-----~apSIvFiDEId 288 (440)
T KOG0726|consen 264 PKLVRELFRVAEE-----HAPSIVFIDEID 288 (440)
T ss_pred hHHHHHHHHHHHh-----cCCceEEeehhh
Confidence 2344444444433 245678888874
No 488
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.76 E-value=0.064 Score=56.21 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..+-|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 34678899999999999999999854
No 489
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.76 E-value=0.013 Score=54.87 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+..+|+|.|+.|.||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 45789999999999999999999774
No 490
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.76 E-value=0.021 Score=46.91 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.4
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
.++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999874
No 491
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.76 E-value=0.032 Score=53.76 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|.|||||++.+...
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 492
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.75 E-value=0.025 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|..|+|||||++.+...
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988873
No 493
>PRK08356 hypothetical protein; Provisional
Probab=95.74 E-value=0.0094 Score=48.04 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
.+|.|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999984
No 494
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=95.74 E-value=0.02 Score=52.84 Aligned_cols=70 Identities=23% Similarity=0.245 Sum_probs=44.9
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccCe-EEEEEecCCC-CHHHHHHHHHHHccCCCC-----------------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFDK-ILWVCVSDTF-DEFRVAKAMVEALDGHES----------------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~~----------------- 182 (246)
.-++|.|..|+|||+|| ..+.+.. .-+. ++++.+++.. ...++.+.+...-.....
T Consensus 163 Qr~~Ifg~~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a 238 (502)
T PRK09281 163 QRELIIGDRQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLA 238 (502)
T ss_pred cEEEeecCCCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHH
Confidence 56899999999999995 5555521 2234 4777777654 344555555443211110
Q ss_pred ------------CCCCeEEEEEeCCC
Q 045522 183 ------------RLGKRFLLVLDDVW 196 (246)
Q Consensus 183 ------------~~~kr~LlVlDdv~ 196 (246)
-++++.|+|+||+-
T Consensus 239 ~~~a~tiAEyfrd~G~~VLli~DdlT 264 (502)
T PRK09281 239 PYAGCAMGEYFMDNGKDALIVYDDLS 264 (502)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCch
Confidence 45899999999993
No 495
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.73 E-value=0.0081 Score=51.60 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.+.|++|+||||+|+.+...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888999999999999998763
No 496
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.72 E-value=0.0062 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.0
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|.++|++|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998874
No 497
>PRK04182 cytidylate kinase; Provisional
Probab=95.72 E-value=0.0079 Score=47.32 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=20.2
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 498
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.72 E-value=0.028 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.-..++|+|+.|.|||||++.+..-
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988654
No 499
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.72 E-value=0.0081 Score=47.72 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++.|+|+.|.|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998873
No 500
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.71 E-value=0.039 Score=52.26 Aligned_cols=50 Identities=16% Similarity=0.019 Sum_probs=30.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccc-cccCeEEEEEecCCCCHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVK-RKFDKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~ 172 (246)
++..|.|.+|+||||++..+....... ..-...+.+.....-....+.+.
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~ 218 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTES 218 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHH
Confidence 688999999999999998877632111 11124555555444344444433
Done!