Query 045522
Match_columns 246
No_of_seqs 206 out of 2099
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 04:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.8E-25 6E-30 206.2 10.8 137 98-245 131-295 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 6.7E-21 2.3E-25 189.0 10.6 141 92-245 121-288 (1249)
3 1vt4_I APAF-1 related killer D 99.8 1.9E-21 6.6E-26 186.7 5.1 132 96-241 129-290 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 4.7E-19 1.6E-23 164.2 8.4 137 93-244 122-287 (591)
5 1w5s_A Origin recognition comp 99.3 1.3E-12 4.5E-17 115.3 6.7 152 94-245 21-217 (412)
6 2chg_A Replication factor C sm 99.3 1.6E-11 5.4E-16 98.5 11.7 145 95-245 17-163 (226)
7 1fnn_A CDC6P, cell division co 99.3 1.6E-11 5.3E-16 107.4 10.9 149 95-245 17-195 (389)
8 2v1u_A Cell division control p 99.3 1.5E-11 5.1E-16 107.3 9.7 148 95-245 19-203 (387)
9 2qby_A CDC6 homolog 1, cell di 99.3 5.2E-12 1.8E-16 110.1 6.5 148 94-245 19-199 (386)
10 2qby_B CDC6 homolog 3, cell di 99.2 1E-11 3.5E-16 108.6 7.7 146 95-245 20-199 (384)
11 2fna_A Conserved hypothetical 99.2 4.4E-11 1.5E-15 103.1 10.4 138 93-245 11-211 (357)
12 2qen_A Walker-type ATPase; unk 99.2 1.5E-11 5.1E-16 105.8 6.7 138 92-245 9-205 (350)
13 1njg_A DNA polymerase III subu 99.2 9.5E-11 3.3E-15 95.0 10.4 144 95-245 23-187 (250)
14 1sxj_B Activator 1 37 kDa subu 99.1 1.7E-10 5.7E-15 98.3 9.4 144 95-245 21-168 (323)
15 1iqp_A RFCS; clamp loader, ext 99.0 7.6E-10 2.6E-14 94.4 6.8 144 95-245 25-171 (327)
16 2chq_A Replication factor C sm 98.9 1.7E-09 5.7E-14 91.9 5.1 141 95-245 17-163 (319)
17 1jbk_A CLPB protein; beta barr 98.8 2.4E-09 8.2E-14 83.6 5.2 121 95-227 22-162 (195)
18 1jr3_A DNA polymerase III subu 98.8 1.2E-08 4.2E-13 88.5 9.4 144 95-245 16-180 (373)
19 2p65_A Hypothetical protein PF 98.8 1.6E-08 5.3E-13 78.8 7.7 121 95-227 22-163 (187)
20 3te6_A Regulatory protein SIR3 98.8 3E-08 1E-12 84.9 9.9 112 95-210 20-154 (318)
21 3n70_A Transport activator; si 98.8 8.1E-09 2.8E-13 78.3 5.7 113 96-225 2-115 (145)
22 3u61_B DNA polymerase accessor 98.7 2.6E-08 8.8E-13 85.2 8.4 135 95-244 26-166 (324)
23 1sxj_D Activator 1 41 kDa subu 98.6 1.4E-07 4.9E-12 81.1 9.1 143 95-244 37-193 (353)
24 3bos_A Putative DNA replicatio 98.6 3.2E-08 1.1E-12 80.3 4.3 133 95-245 28-176 (242)
25 3co5_A Putative two-component 98.6 3.5E-08 1.2E-12 74.6 4.2 110 96-225 5-115 (143)
26 1sxj_E Activator 1 40 kDa subu 98.6 1.7E-07 5.9E-12 80.8 9.0 146 95-245 14-195 (354)
27 3pvs_A Replication-associated 98.6 7.8E-08 2.7E-12 86.2 6.8 136 95-245 26-167 (447)
28 1sxj_C Activator 1 40 kDa subu 98.5 1.6E-07 5.4E-12 81.0 7.7 142 95-244 25-170 (340)
29 2gno_A DNA polymerase III, gam 98.5 3.3E-07 1.1E-11 78.0 9.2 138 99-245 1-141 (305)
30 1hqc_A RUVB; extended AAA-ATPa 98.5 6.3E-08 2.1E-12 82.5 4.3 104 95-211 12-115 (324)
31 3ec2_A DNA replication protein 98.5 7.5E-08 2.6E-12 75.3 4.4 98 122-226 38-143 (180)
32 1sxj_A Activator 1 95 kDa subu 98.5 3.6E-07 1.2E-11 83.4 9.4 142 95-244 39-210 (516)
33 3h4m_A Proteasome-activating n 98.5 1.3E-07 4.5E-12 79.2 5.7 94 94-197 16-121 (285)
34 2w58_A DNAI, primosome compone 98.5 8.8E-08 3E-12 76.2 4.0 112 103-225 37-158 (202)
35 2z4s_A Chromosomal replication 98.4 3.2E-07 1.1E-11 82.1 7.5 115 122-244 130-264 (440)
36 3pfi_A Holliday junction ATP-d 98.4 9.4E-08 3.2E-12 82.1 3.9 104 95-212 29-132 (338)
37 2bjv_A PSP operon transcriptio 98.4 4.1E-07 1.4E-11 75.5 7.6 124 95-225 6-150 (265)
38 3syl_A Protein CBBX; photosynt 98.4 4.5E-07 1.5E-11 76.7 7.9 123 96-226 32-179 (309)
39 2qz4_A Paraplegin; AAA+, SPG7, 98.4 1.2E-06 4E-11 72.2 10.1 94 95-198 6-110 (262)
40 1a5t_A Delta prime, HOLB; zinc 98.4 2.8E-06 9.7E-11 73.1 11.6 137 101-245 8-169 (334)
41 2kjq_A DNAA-related protein; s 98.4 2.1E-07 7.3E-12 70.9 3.8 102 123-241 37-148 (149)
42 1d2n_A N-ethylmaleimide-sensit 98.4 7.5E-07 2.6E-11 74.2 7.5 137 95-244 33-199 (272)
43 3uk6_A RUVB-like 2; hexameric 98.4 9.7E-07 3.3E-11 76.5 8.5 48 95-146 44-94 (368)
44 1l8q_A Chromosomal replication 98.3 4E-07 1.4E-11 77.8 5.3 97 121-225 36-140 (324)
45 1ofh_A ATP-dependent HSL prote 98.3 6.5E-07 2.2E-11 75.5 6.0 100 95-199 15-129 (310)
46 3eie_A Vacuolar protein sortin 98.3 1.1E-06 3.7E-11 75.2 7.4 94 95-198 18-122 (322)
47 4fcw_A Chaperone protein CLPB; 98.3 1.9E-06 6.6E-11 72.8 8.4 127 96-225 18-169 (311)
48 1qvr_A CLPB protein; coiled co 98.3 1.8E-06 6.2E-11 83.2 8.9 94 95-198 170-275 (854)
49 1ojl_A Transcriptional regulat 98.3 1.9E-06 6.5E-11 73.3 8.0 123 95-225 2-146 (304)
50 3d8b_A Fidgetin-like protein 1 98.2 4.6E-06 1.6E-10 72.4 8.2 93 95-197 84-187 (357)
51 1xwi_A SKD1 protein; VPS4B, AA 98.2 1E-05 3.5E-10 69.3 10.0 95 95-198 12-117 (322)
52 3b9p_A CG5977-PA, isoform A; A 98.1 1.3E-05 4.5E-10 67.3 10.0 94 95-198 21-125 (297)
53 2qp9_X Vacuolar protein sortin 98.1 4.2E-06 1.4E-10 72.6 6.2 94 95-198 51-155 (355)
54 3cf0_A Transitional endoplasmi 98.1 7.8E-06 2.7E-10 69.2 7.4 51 95-145 15-72 (301)
55 4b4t_L 26S protease subunit RP 98.0 5.2E-05 1.8E-09 67.5 12.5 93 95-197 181-285 (437)
56 3pxi_A Negative regulator of g 98.0 6.5E-06 2.2E-10 78.4 7.1 120 95-224 491-628 (758)
57 2zan_A Vacuolar protein sortin 98.0 1.9E-05 6.6E-10 70.5 8.5 51 95-145 134-190 (444)
58 2qgz_A Helicase loader, putati 98.0 3.3E-06 1.1E-10 71.9 3.1 113 103-225 136-257 (308)
59 1r6b_X CLPA protein; AAA+, N-t 98.0 4.5E-05 1.5E-09 72.5 11.1 93 95-198 186-290 (758)
60 3vfd_A Spastin; ATPase, microt 97.9 7.3E-06 2.5E-10 71.9 5.1 93 95-197 115-218 (389)
61 3t15_A Ribulose bisphosphate c 97.9 2.6E-05 8.8E-10 65.8 7.7 72 120-197 34-110 (293)
62 2r44_A Uncharacterized protein 97.9 1E-05 3.5E-10 69.2 5.1 104 95-211 27-134 (331)
63 3hu3_A Transitional endoplasmi 97.9 6.8E-06 2.3E-10 74.4 3.9 92 95-196 204-307 (489)
64 4b4t_K 26S protease regulatory 97.9 2E-05 6.7E-10 70.0 6.8 92 95-196 172-275 (428)
65 1lv7_A FTSH; alpha/beta domain 97.9 2.6E-05 8.9E-10 64.2 6.9 92 95-196 12-114 (257)
66 4b4t_I 26S protease regulatory 97.8 5.1E-05 1.8E-09 67.1 7.9 93 95-197 182-286 (437)
67 2ce7_A Cell division protein F 97.8 9E-05 3.1E-09 66.7 9.4 93 95-197 16-119 (476)
68 4b4t_J 26S protease regulatory 97.8 2.2E-05 7.4E-10 69.1 5.0 93 95-197 148-252 (405)
69 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00012 4.2E-09 69.5 10.6 121 95-225 458-607 (758)
70 1qvr_A CLPB protein; coiled co 97.7 4E-05 1.4E-09 73.9 7.0 128 96-225 559-710 (854)
71 4b4t_H 26S protease regulatory 97.7 3.4E-05 1.2E-09 68.9 5.4 93 95-197 209-313 (467)
72 3pxi_A Negative regulator of g 97.7 3.4E-05 1.2E-09 73.4 5.6 45 95-145 180-224 (758)
73 3m6a_A ATP-dependent protease 97.7 2E-05 7E-10 72.2 3.9 51 95-145 81-131 (543)
74 1g8p_A Magnesium-chelatase 38 97.7 4.3E-05 1.5E-09 65.4 5.5 45 95-145 24-68 (350)
75 4b4t_M 26S protease regulatory 97.7 2.7E-05 9.3E-10 69.2 4.0 92 95-196 181-284 (434)
76 2c9o_A RUVB-like 1; hexameric 97.6 0.00014 4.8E-09 65.1 7.4 94 95-197 37-137 (456)
77 3cf2_A TER ATPase, transitiona 97.5 0.00015 5.3E-09 69.0 7.4 93 95-197 204-308 (806)
78 3pxg_A Negative regulator of g 97.5 6.4E-05 2.2E-09 67.6 4.4 45 95-145 180-224 (468)
79 1um8_A ATP-dependent CLP prote 97.5 3.6E-05 1.2E-09 67.0 2.5 99 95-199 21-150 (376)
80 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00012 4.3E-09 62.4 5.1 65 122-198 123-194 (331)
81 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00048 1.6E-08 62.3 9.0 97 94-197 30-134 (499)
82 2x8a_A Nuclear valosin-contain 97.4 0.00098 3.3E-08 55.5 10.0 92 95-197 10-114 (274)
83 1ypw_A Transitional endoplasmi 97.4 0.00025 8.7E-09 67.9 6.9 93 95-197 204-308 (806)
84 1jr3_D DNA polymerase III, del 97.2 0.0033 1.1E-07 53.7 11.8 118 122-245 18-144 (343)
85 1rz3_A Hypothetical protein rb 97.2 0.00034 1.2E-08 55.3 4.9 42 100-144 3-44 (201)
86 1in4_A RUVB, holliday junction 97.1 0.0002 6.7E-09 61.4 2.8 50 95-145 25-74 (334)
87 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00046 1.6E-08 62.5 4.8 105 95-211 22-134 (500)
88 3hws_A ATP-dependent CLP prote 97.0 0.00041 1.4E-08 60.0 4.0 50 96-145 16-74 (363)
89 2r62_A Cell division protease 97.0 0.00025 8.5E-09 58.5 2.4 51 95-145 11-67 (268)
90 2orw_A Thymidine kinase; TMTK, 97.0 0.00091 3.1E-08 52.3 5.6 38 185-225 75-112 (184)
91 3hr8_A Protein RECA; alpha and 97.0 0.0012 4.2E-08 57.1 6.8 45 120-166 59-103 (356)
92 3c8u_A Fructokinase; YP_612366 97.0 0.00053 1.8E-08 54.5 4.1 39 103-145 7-45 (208)
93 3upu_A ATP-dependent DNA helic 96.9 0.0022 7.5E-08 57.3 8.0 96 123-227 46-166 (459)
94 3lw7_A Adenylate kinase relate 96.8 0.00054 1.8E-08 52.1 2.8 20 123-142 2-21 (179)
95 1zp6_A Hypothetical protein AT 96.8 0.00074 2.5E-08 52.5 3.5 24 122-145 9-32 (191)
96 2eyu_A Twitching motility prot 96.8 0.0052 1.8E-07 50.8 8.6 23 122-144 25-47 (261)
97 2zr9_A Protein RECA, recombina 96.8 0.0021 7.2E-08 55.4 6.5 44 121-166 60-103 (349)
98 1qhx_A CPT, protein (chloramph 96.8 0.00064 2.2E-08 52.2 2.8 22 123-144 4-25 (178)
99 3kb2_A SPBC2 prophage-derived 96.8 0.00068 2.3E-08 51.6 2.8 23 123-145 2-24 (173)
100 1ly1_A Polynucleotide kinase; 96.7 0.00076 2.6E-08 51.7 3.0 22 123-144 3-24 (181)
101 1gvn_B Zeta; postsegregational 96.7 0.0014 4.9E-08 54.9 4.9 41 103-144 15-55 (287)
102 2cvh_A DNA repair and recombin 96.7 0.002 6.8E-08 51.0 5.6 45 121-170 19-63 (220)
103 3io5_A Recombination and repai 96.7 0.0048 1.6E-07 52.5 7.9 43 124-166 30-72 (333)
104 1odf_A YGR205W, hypothetical 3 96.7 0.00091 3.1E-08 56.3 3.4 26 120-145 29-54 (290)
105 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0027 9.3E-08 56.8 6.5 49 124-173 153-202 (473)
106 2p5t_B PEZT; postsegregational 96.7 0.0016 5.4E-08 53.4 4.7 42 103-145 14-55 (253)
107 1kgd_A CASK, peripheral plasma 96.7 0.0009 3.1E-08 51.9 2.9 22 123-144 6-27 (180)
108 3tqc_A Pantothenate kinase; bi 96.6 0.0016 5.5E-08 55.5 4.5 46 97-144 69-114 (321)
109 1kag_A SKI, shikimate kinase I 96.6 0.00074 2.5E-08 51.6 2.2 23 123-145 5-27 (173)
110 3vaa_A Shikimate kinase, SK; s 96.6 0.00089 3.1E-08 52.7 2.7 23 122-144 25-47 (199)
111 3uie_A Adenylyl-sulfate kinase 96.6 0.0012 4.1E-08 52.0 3.4 25 121-145 24-48 (200)
112 1n0w_A DNA repair protein RAD5 96.6 0.0043 1.5E-07 49.8 6.8 47 121-167 23-73 (243)
113 1g5t_A COB(I)alamin adenosyltr 96.6 0.0057 2E-07 48.3 7.2 42 185-226 119-163 (196)
114 1nks_A Adenylate kinase; therm 96.6 0.0011 3.9E-08 51.2 3.2 23 123-145 2-24 (194)
115 2rhm_A Putative kinase; P-loop 96.6 0.0013 4.4E-08 51.1 3.5 24 122-145 5-28 (193)
116 1uj2_A Uridine-cytidine kinase 96.6 0.0011 3.9E-08 54.2 3.1 26 120-145 20-45 (252)
117 3trf_A Shikimate kinase, SK; a 96.6 0.00098 3.4E-08 51.5 2.6 24 122-145 5-28 (185)
118 3jvv_A Twitching mobility prot 96.6 0.0057 2E-07 52.9 7.5 92 123-230 124-235 (356)
119 3zvl_A Bifunctional polynucleo 96.5 0.0058 2E-07 53.9 7.7 26 120-145 256-281 (416)
120 3tr0_A Guanylate kinase, GMP k 96.5 0.0012 4.1E-08 51.9 2.9 22 123-144 8-29 (205)
121 2b8t_A Thymidine kinase; deoxy 96.5 0.0016 5.4E-08 52.7 3.6 24 122-145 12-35 (223)
122 1knq_A Gluconate kinase; ALFA/ 96.5 0.0015 5.2E-08 50.0 3.4 23 122-144 8-30 (175)
123 3asz_A Uridine kinase; cytidin 96.5 0.0015 5E-08 51.7 3.3 25 121-145 5-29 (211)
124 1xp8_A RECA protein, recombina 96.5 0.0048 1.6E-07 53.6 6.8 43 122-166 74-116 (366)
125 3tau_A Guanylate kinase, GMP k 96.5 0.0013 4.6E-08 52.2 2.9 24 122-145 8-31 (208)
126 4gp7_A Metallophosphoesterase; 96.5 0.0014 4.8E-08 50.4 2.8 22 122-143 9-30 (171)
127 4eun_A Thermoresistant glucoki 96.5 0.0013 4.5E-08 51.8 2.7 23 122-144 29-51 (200)
128 1kht_A Adenylate kinase; phosp 96.5 0.0014 4.7E-08 50.7 2.8 23 123-145 4-26 (192)
129 2qt1_A Nicotinamide riboside k 96.4 0.0022 7.5E-08 50.6 4.0 26 120-145 19-44 (207)
130 2bdt_A BH3686; alpha-beta prot 96.4 0.0016 5.5E-08 50.6 3.1 22 123-144 3-24 (189)
131 1ex7_A Guanylate kinase; subst 96.4 0.00084 2.9E-08 52.7 1.4 22 123-144 2-23 (186)
132 3t61_A Gluconokinase; PSI-biol 96.4 0.0011 3.9E-08 52.1 2.2 24 122-145 18-41 (202)
133 1uf9_A TT1252 protein; P-loop, 96.4 0.0019 6.4E-08 50.5 3.5 25 120-144 6-30 (203)
134 2ze6_A Isopentenyl transferase 96.4 0.0016 5.4E-08 53.6 3.0 23 123-145 2-24 (253)
135 2ewv_A Twitching motility prot 96.4 0.0056 1.9E-07 53.2 6.7 23 122-144 136-158 (372)
136 3umf_A Adenylate kinase; rossm 96.4 0.0016 5.6E-08 52.4 3.0 27 120-146 27-53 (217)
137 1ye8_A Protein THEP1, hypothet 96.4 0.0016 5.6E-08 50.6 2.9 22 124-145 2-23 (178)
138 4a74_A DNA repair and recombin 96.4 0.0062 2.1E-07 48.4 6.5 45 121-165 24-72 (231)
139 3a00_A Guanylate kinase, GMP k 96.4 0.0012 4.1E-08 51.4 2.1 22 123-144 2-23 (186)
140 2j41_A Guanylate kinase; GMP, 96.4 0.0016 5.3E-08 51.2 2.8 23 123-145 7-29 (207)
141 1cke_A CK, MSSA, protein (cyti 96.4 0.0016 5.3E-08 52.1 2.8 22 123-144 6-27 (227)
142 1fx0_B ATP synthase beta chain 96.4 0.013 4.6E-07 52.5 9.1 53 123-176 166-219 (498)
143 1ukz_A Uridylate kinase; trans 96.4 0.0021 7.2E-08 50.5 3.5 26 120-145 13-38 (203)
144 2c95_A Adenylate kinase 1; tra 96.4 0.0018 6E-08 50.4 3.0 23 122-144 9-31 (196)
145 1tev_A UMP-CMP kinase; ploop, 96.4 0.0018 6.2E-08 50.1 3.1 22 123-144 4-25 (196)
146 2jaq_A Deoxyguanosine kinase; 96.4 0.0017 5.7E-08 50.8 2.8 22 124-145 2-23 (205)
147 3cf2_A TER ATPase, transitiona 96.4 0.0013 4.6E-08 62.6 2.6 94 94-197 476-581 (806)
148 2if2_A Dephospho-COA kinase; a 96.4 0.0018 6.3E-08 50.9 3.0 21 124-144 3-23 (204)
149 3iij_A Coilin-interacting nucl 96.3 0.0014 5E-08 50.4 2.3 24 122-145 11-34 (180)
150 1y63_A LMAJ004144AAA protein; 96.3 0.002 6.8E-08 50.0 3.0 25 121-145 9-33 (184)
151 2qor_A Guanylate kinase; phosp 96.3 0.0015 5E-08 51.7 2.3 24 122-145 12-35 (204)
152 1qf9_A UMP/CMP kinase, protein 96.3 0.0026 8.9E-08 49.2 3.7 23 122-144 6-28 (194)
153 1zuh_A Shikimate kinase; alpha 96.3 0.0017 5.9E-08 49.4 2.5 26 120-145 5-30 (168)
154 1jjv_A Dephospho-COA kinase; P 96.3 0.0022 7.4E-08 50.6 3.1 22 123-144 3-24 (206)
155 2z43_A DNA repair and recombin 96.3 0.0082 2.8E-07 51.0 6.9 50 121-170 106-159 (324)
156 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0033 1.1E-07 54.3 4.4 42 101-144 5-46 (359)
157 1via_A Shikimate kinase; struc 96.3 0.0018 6.2E-08 49.7 2.6 22 124-145 6-27 (175)
158 1lvg_A Guanylate kinase, GMP k 96.3 0.0015 5.2E-08 51.5 2.2 22 123-144 5-26 (198)
159 3cm0_A Adenylate kinase; ATP-b 96.3 0.0024 8.3E-08 49.2 3.3 22 123-144 5-26 (186)
160 2ck3_D ATP synthase subunit be 96.3 0.012 4.1E-07 52.6 8.0 53 123-176 154-207 (482)
161 2bwj_A Adenylate kinase 5; pho 96.3 0.0022 7.6E-08 49.9 3.0 23 123-145 13-35 (199)
162 1ixz_A ATP-dependent metallopr 96.3 0.0018 6.2E-08 52.8 2.6 91 95-196 16-118 (254)
163 2plr_A DTMP kinase, probable t 96.3 0.0023 7.8E-08 50.3 3.0 24 123-146 5-28 (213)
164 2yvu_A Probable adenylyl-sulfa 96.3 0.0028 9.7E-08 49.1 3.6 26 120-145 11-36 (186)
165 2cdn_A Adenylate kinase; phosp 96.3 0.0024 8.2E-08 50.1 3.1 26 120-145 18-43 (201)
166 1v5w_A DMC1, meiotic recombina 96.2 0.015 5.2E-07 49.8 8.4 52 120-171 120-175 (343)
167 4akg_A Glutathione S-transfera 96.2 0.018 6.3E-07 61.4 10.4 85 123-211 1268-1367(2695)
168 2iyv_A Shikimate kinase, SK; t 96.2 0.0015 5E-08 50.5 1.8 22 123-144 3-24 (184)
169 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0024 8.4E-08 52.5 3.2 24 122-145 4-27 (260)
170 2bbw_A Adenylate kinase 4, AK4 96.2 0.0022 7.7E-08 52.1 2.9 23 122-144 27-49 (246)
171 3tlx_A Adenylate kinase 2; str 96.2 0.003 1E-07 51.5 3.6 24 121-144 28-51 (243)
172 1znw_A Guanylate kinase, GMP k 96.2 0.0024 8.1E-08 50.6 2.9 23 122-144 20-42 (207)
173 1g41_A Heat shock protein HSLU 96.2 0.0035 1.2E-07 55.8 4.2 51 95-145 15-73 (444)
174 2z0h_A DTMP kinase, thymidylat 96.2 0.0061 2.1E-07 47.3 5.2 22 124-145 2-23 (197)
175 3aez_A Pantothenate kinase; tr 96.2 0.0032 1.1E-07 53.5 3.7 25 120-144 88-112 (312)
176 1gtv_A TMK, thymidylate kinase 96.2 0.0021 7.2E-08 50.8 2.3 22 124-145 2-23 (214)
177 1tue_A Replication protein E1; 96.2 0.0041 1.4E-07 49.6 3.9 37 104-145 45-81 (212)
178 3ney_A 55 kDa erythrocyte memb 96.1 0.0028 9.7E-08 50.2 3.0 25 121-145 18-42 (197)
179 1aky_A Adenylate kinase; ATP:A 96.1 0.0025 8.6E-08 50.8 2.8 24 122-145 4-27 (220)
180 1e6c_A Shikimate kinase; phosp 96.1 0.0019 6.6E-08 49.2 2.0 23 123-145 3-25 (173)
181 3ice_A Transcription terminati 96.1 0.002 7E-08 56.2 2.2 23 122-144 174-196 (422)
182 2pbr_A DTMP kinase, thymidylat 96.1 0.0027 9.2E-08 49.2 2.7 22 124-145 2-23 (195)
183 1ny5_A Transcriptional regulat 96.1 0.02 6.8E-07 49.9 8.5 123 96-225 138-281 (387)
184 2i1q_A DNA repair and recombin 96.1 0.011 3.9E-07 50.0 6.8 52 120-171 96-161 (322)
185 1nn5_A Similar to deoxythymidy 96.1 0.0031 1.1E-07 49.8 3.0 24 122-145 9-32 (215)
186 2jeo_A Uridine-cytidine kinase 96.1 0.0034 1.2E-07 51.1 3.3 24 121-144 24-47 (245)
187 2pt5_A Shikimate kinase, SK; a 96.1 0.0029 9.8E-08 48.0 2.7 22 124-145 2-23 (168)
188 2wwf_A Thymidilate kinase, put 96.1 0.003 1E-07 49.7 2.9 24 122-145 10-33 (212)
189 3bh0_A DNAB-like replicative h 96.1 0.01 3.4E-07 50.3 6.3 49 122-174 68-116 (315)
190 1z6g_A Guanylate kinase; struc 96.1 0.0025 8.5E-08 51.1 2.3 22 123-144 24-45 (218)
191 1pzn_A RAD51, DNA repair and r 96.1 0.011 3.6E-07 51.0 6.4 46 120-165 129-178 (349)
192 2vli_A Antibiotic resistance p 96.0 0.0021 7.1E-08 49.5 1.8 24 122-145 5-28 (183)
193 1iy2_A ATP-dependent metallopr 96.0 0.0027 9.4E-08 52.6 2.6 52 94-146 39-97 (278)
194 1xjc_A MOBB protein homolog; s 96.0 0.0031 1E-07 48.7 2.6 25 121-145 3-27 (169)
195 1zd8_A GTP:AMP phosphotransfer 96.0 0.0031 1.1E-07 50.6 2.8 24 122-145 7-30 (227)
196 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0045 1.5E-07 49.2 3.7 37 123-161 24-60 (235)
197 3k1j_A LON protease, ATP-depen 96.0 0.0039 1.3E-07 57.7 3.7 43 95-145 41-83 (604)
198 2pez_A Bifunctional 3'-phospho 96.0 0.0039 1.3E-07 47.9 3.2 23 122-144 5-27 (179)
199 4e22_A Cytidylate kinase; P-lo 96.0 0.0034 1.2E-07 51.4 2.9 22 123-144 28-49 (252)
200 1sq5_A Pantothenate kinase; P- 96.0 0.008 2.7E-07 50.7 5.3 25 120-144 78-102 (308)
201 2ehv_A Hypothetical protein PH 96.0 0.0035 1.2E-07 50.6 2.9 22 122-143 30-51 (251)
202 3fb4_A Adenylate kinase; psych 96.0 0.0033 1.1E-07 49.8 2.8 22 124-145 2-23 (216)
203 1s96_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 50.4 2.9 24 122-145 16-39 (219)
204 2ged_A SR-beta, signal recogni 96.0 0.0053 1.8E-07 47.4 3.8 26 120-145 46-71 (193)
205 1rj9_A FTSY, signal recognitio 96.0 0.0036 1.2E-07 52.9 3.0 24 121-144 101-124 (304)
206 2f6r_A COA synthase, bifunctio 96.0 0.0048 1.6E-07 51.4 3.7 24 120-143 73-96 (281)
207 3dl0_A Adenylate kinase; phosp 95.9 0.0036 1.2E-07 49.6 2.8 22 124-145 2-23 (216)
208 1cr0_A DNA primase/helicase; R 95.9 0.012 4.2E-07 49.0 6.1 37 122-160 35-72 (296)
209 1zak_A Adenylate kinase; ATP:A 95.9 0.0033 1.1E-07 50.2 2.4 24 122-145 5-28 (222)
210 3p32_A Probable GTPase RV1496/ 95.9 0.0071 2.4E-07 52.1 4.6 37 104-144 65-101 (355)
211 3e1s_A Exodeoxyribonuclease V, 95.9 0.0094 3.2E-07 54.8 5.7 96 123-224 205-314 (574)
212 1htw_A HI0065; nucleotide-bind 95.9 0.0053 1.8E-07 46.7 3.4 24 122-145 33-56 (158)
213 3fwy_A Light-independent proto 95.9 0.0045 1.5E-07 52.6 3.3 25 120-144 46-70 (314)
214 2grj_A Dephospho-COA kinase; T 95.9 0.0051 1.7E-07 48.4 3.4 25 120-144 10-34 (192)
215 3lda_A DNA repair protein RAD5 95.9 0.017 5.8E-07 50.7 7.0 49 121-169 177-229 (400)
216 2dr3_A UPF0273 protein PH0284; 95.9 0.0065 2.2E-07 48.8 4.1 39 122-162 23-61 (247)
217 2v54_A DTMP kinase, thymidylat 95.9 0.0041 1.4E-07 48.6 2.8 23 123-145 5-27 (204)
218 2f1r_A Molybdopterin-guanine d 95.9 0.0034 1.2E-07 48.5 2.2 24 123-146 3-26 (171)
219 2hf9_A Probable hydrogenase ni 95.9 0.0052 1.8E-07 48.9 3.4 26 120-145 36-61 (226)
220 3be4_A Adenylate kinase; malar 95.8 0.0042 1.5E-07 49.5 2.8 23 123-145 6-28 (217)
221 1m7g_A Adenylylsulfate kinase; 95.8 0.0052 1.8E-07 48.7 3.3 24 122-145 25-48 (211)
222 2qe7_A ATP synthase subunit al 95.8 0.013 4.5E-07 52.6 6.1 69 123-195 163-263 (502)
223 2pcj_A ABC transporter, lipopr 95.8 0.0047 1.6E-07 49.8 2.9 22 123-144 31-52 (224)
224 3lnc_A Guanylate kinase, GMP k 95.8 0.003 1E-07 50.8 1.8 21 123-143 28-48 (231)
225 1vht_A Dephospho-COA kinase; s 95.8 0.0054 1.9E-07 48.7 3.3 23 122-144 4-26 (218)
226 3tif_A Uncharacterized ABC tra 95.8 0.0044 1.5E-07 50.3 2.7 22 123-144 32-53 (235)
227 1u94_A RECA protein, recombina 95.8 0.007 2.4E-07 52.3 4.1 44 121-166 62-105 (356)
228 3vr4_D V-type sodium ATPase su 95.8 0.01 3.6E-07 52.8 5.2 73 123-195 152-257 (465)
229 2r9v_A ATP synthase subunit al 95.8 0.012 4.1E-07 53.0 5.7 69 123-195 176-276 (515)
230 3e70_C DPA, signal recognition 95.8 0.0087 3E-07 51.2 4.6 26 120-145 127-152 (328)
231 3sr0_A Adenylate kinase; phosp 95.8 0.0042 1.5E-07 49.4 2.5 23 124-146 2-24 (206)
232 1vma_A Cell division protein F 95.7 0.0092 3.2E-07 50.5 4.6 26 120-145 102-127 (306)
233 2i3b_A HCR-ntpase, human cance 95.7 0.0042 1.4E-07 48.7 2.3 22 124-145 3-24 (189)
234 2wsm_A Hydrogenase expression/ 95.7 0.0064 2.2E-07 48.2 3.3 26 120-145 28-53 (221)
235 3ake_A Cytidylate kinase; CMP 95.7 0.0052 1.8E-07 48.1 2.8 21 124-144 4-24 (208)
236 2onk_A Molybdate/tungstate ABC 95.7 0.0052 1.8E-07 50.1 2.8 22 123-144 25-46 (240)
237 3b9q_A Chloroplast SRP recepto 95.7 0.0065 2.2E-07 51.3 3.4 26 120-145 98-123 (302)
238 1oix_A RAS-related protein RAB 95.6 0.0081 2.8E-07 46.6 3.7 24 122-145 29-52 (191)
239 1e4v_A Adenylate kinase; trans 95.6 0.0061 2.1E-07 48.4 2.9 22 124-145 2-23 (214)
240 3dm5_A SRP54, signal recogniti 95.6 0.02 6.9E-07 50.8 6.5 24 121-144 99-122 (443)
241 2px0_A Flagellar biosynthesis 95.6 0.0062 2.1E-07 51.3 3.1 25 121-145 104-128 (296)
242 3f9v_A Minichromosome maintena 95.6 0.0039 1.3E-07 57.6 1.9 51 95-145 295-350 (595)
243 1u0j_A DNA replication protein 95.6 0.011 3.8E-07 48.9 4.5 36 106-145 92-127 (267)
244 2cbz_A Multidrug resistance-as 95.6 0.0057 2E-07 49.7 2.7 23 123-145 32-54 (237)
245 3b85_A Phosphate starvation-in 95.6 0.0048 1.6E-07 49.2 2.2 22 123-144 23-44 (208)
246 1b0u_A Histidine permease; ABC 95.6 0.0058 2E-07 50.5 2.8 22 123-144 33-54 (262)
247 2xb4_A Adenylate kinase; ATP-b 95.6 0.0061 2.1E-07 48.8 2.8 22 124-145 2-23 (223)
248 2zej_A Dardarin, leucine-rich 95.6 0.0056 1.9E-07 47.1 2.5 22 124-145 4-25 (184)
249 1ltq_A Polynucleotide kinase; 95.6 0.0065 2.2E-07 50.7 3.0 22 123-144 3-24 (301)
250 4eaq_A DTMP kinase, thymidylat 95.6 0.014 4.7E-07 47.1 4.9 26 121-146 25-50 (229)
251 3gfo_A Cobalt import ATP-bindi 95.6 0.0061 2.1E-07 50.8 2.8 22 123-144 35-56 (275)
252 2wji_A Ferrous iron transport 95.6 0.0085 2.9E-07 45.2 3.4 23 123-145 4-26 (165)
253 3gqb_B V-type ATP synthase bet 95.6 0.01 3.4E-07 52.9 4.2 53 123-175 148-210 (464)
254 3d3q_A TRNA delta(2)-isopenten 95.5 0.0067 2.3E-07 52.1 3.0 23 123-145 8-30 (340)
255 3r20_A Cytidylate kinase; stru 95.5 0.0066 2.2E-07 49.3 2.8 23 122-144 9-31 (233)
256 2vp4_A Deoxynucleoside kinase; 95.5 0.0077 2.6E-07 48.5 3.2 26 120-145 18-43 (230)
257 1np6_A Molybdopterin-guanine d 95.5 0.0064 2.2E-07 47.1 2.6 24 122-145 6-29 (174)
258 1ji0_A ABC transporter; ATP bi 95.5 0.0064 2.2E-07 49.5 2.7 23 123-145 33-55 (240)
259 4g1u_C Hemin import ATP-bindin 95.5 0.011 3.8E-07 48.9 4.2 22 123-144 38-59 (266)
260 1g6h_A High-affinity branched- 95.5 0.0064 2.2E-07 50.0 2.7 22 123-144 34-55 (257)
261 1ak2_A Adenylate kinase isoenz 95.5 0.007 2.4E-07 48.7 2.9 23 123-145 17-39 (233)
262 1yrb_A ATP(GTP)binding protein 95.5 0.01 3.4E-07 48.4 3.8 25 120-144 12-36 (262)
263 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0071 2.4E-07 49.6 2.9 22 123-144 30-51 (250)
264 2olj_A Amino acid ABC transpor 95.5 0.0069 2.3E-07 50.1 2.8 22 123-144 51-72 (263)
265 1mv5_A LMRA, multidrug resista 95.5 0.0076 2.6E-07 49.1 3.0 22 123-144 29-50 (243)
266 2pze_A Cystic fibrosis transme 95.5 0.0071 2.4E-07 48.9 2.8 23 123-145 35-57 (229)
267 3nwj_A ATSK2; P loop, shikimat 95.4 0.0057 1.9E-07 50.2 2.2 22 123-144 49-70 (250)
268 2wjg_A FEOB, ferrous iron tran 95.4 0.011 3.9E-07 45.2 3.8 26 120-145 5-30 (188)
269 1zu4_A FTSY; GTPase, signal re 95.4 0.011 3.8E-07 50.3 4.1 25 120-144 103-127 (320)
270 2ff7_A Alpha-hemolysin translo 95.4 0.007 2.4E-07 49.5 2.7 23 123-145 36-58 (247)
271 2f9l_A RAB11B, member RAS onco 95.4 0.0065 2.2E-07 47.4 2.4 24 122-145 5-28 (199)
272 2qi9_C Vitamin B12 import ATP- 95.4 0.01 3.5E-07 48.7 3.7 23 123-145 27-49 (249)
273 2zu0_C Probable ATP-dependent 95.4 0.0076 2.6E-07 49.9 2.9 23 123-145 47-69 (267)
274 3crm_A TRNA delta(2)-isopenten 95.4 0.0078 2.7E-07 51.3 3.0 23 123-145 6-28 (323)
275 1sgw_A Putative ABC transporte 95.4 0.0061 2.1E-07 48.8 2.2 23 123-145 36-58 (214)
276 3a8t_A Adenylate isopentenyltr 95.4 0.0092 3.1E-07 51.1 3.4 24 122-145 40-63 (339)
277 2dyk_A GTP-binding protein; GT 95.4 0.0095 3.3E-07 44.2 3.2 23 123-145 2-24 (161)
278 1vpl_A ABC transporter, ATP-bi 95.4 0.0075 2.6E-07 49.7 2.8 23 123-145 42-64 (256)
279 3llm_A ATP-dependent RNA helic 95.4 0.098 3.4E-06 41.9 9.4 21 123-143 77-97 (235)
280 2ixe_A Antigen peptide transpo 95.4 0.0076 2.6E-07 50.0 2.7 48 183-230 171-221 (271)
281 3oaa_A ATP synthase subunit al 95.4 0.035 1.2E-06 49.9 7.1 70 123-195 163-263 (513)
282 2ce2_X GTPase HRAS; signaling 95.4 0.0086 3E-07 44.4 2.8 22 124-145 5-26 (166)
283 2ghi_A Transport protein; mult 95.4 0.0077 2.6E-07 49.7 2.7 23 123-145 47-69 (260)
284 2og2_A Putative signal recogni 95.3 0.0097 3.3E-07 51.5 3.4 25 121-145 156-180 (359)
285 3vkg_A Dynein heavy chain, cyt 95.3 0.03 1E-06 60.5 7.6 84 105-199 1294-1387(3245)
286 2nq2_C Hypothetical ABC transp 95.3 0.0083 2.9E-07 49.3 2.8 23 123-145 32-54 (253)
287 1a7j_A Phosphoribulokinase; tr 95.3 0.0042 1.4E-07 52.1 1.0 24 121-144 4-27 (290)
288 3sop_A Neuronal-specific septi 95.3 0.009 3.1E-07 49.5 3.0 21 124-144 4-24 (270)
289 3cmu_A Protein RECA, recombina 95.3 0.016 5.5E-07 60.2 5.3 46 120-167 1425-1470(2050)
290 1nlf_A Regulatory protein REPA 95.3 0.0092 3.2E-07 49.4 3.1 43 122-164 30-80 (279)
291 2yz2_A Putative ABC transporte 95.3 0.0082 2.8E-07 49.6 2.7 22 123-144 34-55 (266)
292 2ihy_A ABC transporter, ATP-bi 95.3 0.0084 2.9E-07 50.0 2.8 23 123-145 48-70 (279)
293 2v9p_A Replication protein E1; 95.3 0.009 3.1E-07 50.5 3.0 24 121-144 125-148 (305)
294 2yhs_A FTSY, cell division pro 95.3 0.02 6.8E-07 51.6 5.3 25 120-144 291-315 (503)
295 3exa_A TRNA delta(2)-isopenten 95.3 0.0099 3.4E-07 50.5 3.2 23 123-145 4-26 (322)
296 3foz_A TRNA delta(2)-isopenten 95.3 0.011 3.8E-07 50.0 3.4 25 121-145 9-33 (316)
297 2xxa_A Signal recognition part 95.2 0.03 1E-06 49.6 6.3 42 104-145 79-123 (433)
298 3mfy_A V-type ATP synthase alp 95.2 0.032 1.1E-06 50.8 6.4 46 123-172 228-274 (588)
299 1q3t_A Cytidylate kinase; nucl 95.2 0.0099 3.4E-07 47.9 2.9 25 120-144 14-38 (236)
300 1svm_A Large T antigen; AAA+ f 95.2 0.013 4.4E-07 51.0 3.7 25 120-144 167-191 (377)
301 2nzj_A GTP-binding protein REM 95.2 0.014 4.9E-07 43.9 3.6 24 122-145 4-27 (175)
302 1fzq_A ADP-ribosylation factor 95.2 0.018 6.2E-07 44.1 4.2 26 120-145 14-39 (181)
303 2fz4_A DNA repair protein RAD2 95.2 0.13 4.4E-06 41.5 9.4 85 125-222 111-225 (237)
304 1z2a_A RAS-related protein RAB 95.1 0.013 4.5E-07 43.7 3.2 24 122-145 5-28 (168)
305 2v3c_C SRP54, signal recogniti 95.1 0.014 4.8E-07 51.8 3.8 25 121-145 98-122 (432)
306 3dzd_A Transcriptional regulat 95.1 0.0034 1.2E-07 54.5 -0.1 110 95-212 129-248 (368)
307 2c61_A A-type ATP synthase non 95.1 0.012 4.2E-07 52.5 3.4 53 123-175 153-208 (469)
308 1svi_A GTP-binding protein YSX 95.1 0.015 5.1E-07 44.8 3.5 25 121-145 22-46 (195)
309 1fx0_A ATP synthase alpha chai 95.1 0.012 4.2E-07 52.9 3.3 69 123-195 164-264 (507)
310 2gj8_A MNME, tRNA modification 95.1 0.012 4.1E-07 44.8 2.9 23 123-145 5-27 (172)
311 3q72_A GTP-binding protein RAD 95.1 0.011 3.6E-07 44.2 2.5 22 124-145 4-25 (166)
312 2qmh_A HPR kinase/phosphorylas 95.1 0.013 4.4E-07 46.4 3.0 23 123-145 35-57 (205)
313 2erx_A GTP-binding protein DI- 95.1 0.012 4E-07 44.1 2.7 23 123-145 4-26 (172)
314 4edh_A DTMP kinase, thymidylat 95.0 0.036 1.2E-06 44.2 5.7 25 122-146 6-30 (213)
315 3nh6_A ATP-binding cassette SU 95.0 0.01 3.4E-07 50.3 2.5 22 123-144 81-102 (306)
316 2ck3_A ATP synthase subunit al 95.0 0.021 7.3E-07 51.4 4.7 73 123-195 163-271 (510)
317 2pjz_A Hypothetical protein ST 95.0 0.011 3.9E-07 48.8 2.8 22 123-144 31-52 (263)
318 1ls1_A Signal recognition part 95.0 0.019 6.3E-07 48.3 4.1 25 121-145 97-121 (295)
319 2lkc_A Translation initiation 95.0 0.014 4.9E-07 44.1 3.1 26 120-145 6-31 (178)
320 1j8m_F SRP54, signal recogniti 95.0 0.026 9E-07 47.4 5.0 24 122-145 98-121 (297)
321 3kl4_A SRP54, signal recogniti 95.0 0.017 5.8E-07 51.2 4.0 25 121-145 96-120 (433)
322 1w36_D RECD, exodeoxyribonucle 95.0 0.04 1.4E-06 51.0 6.6 22 123-144 165-186 (608)
323 3con_A GTPase NRAS; structural 95.0 0.011 3.9E-07 45.3 2.5 23 123-145 22-44 (190)
324 3fvq_A Fe(3+) IONS import ATP- 95.0 0.013 4.4E-07 50.7 3.1 22 123-144 31-52 (359)
325 3end_A Light-independent proto 95.0 0.024 8.3E-07 47.4 4.7 41 120-162 39-79 (307)
326 2fn4_A P23, RAS-related protei 95.0 0.019 6.6E-07 43.3 3.7 26 120-145 7-32 (181)
327 1kao_A RAP2A; GTP-binding prot 95.0 0.012 4.2E-07 43.7 2.6 23 123-145 4-26 (167)
328 3pqc_A Probable GTP-binding pr 95.0 0.016 5.5E-07 44.4 3.3 25 121-145 22-46 (195)
329 2xau_A PRE-mRNA-splicing facto 94.9 0.14 4.7E-06 48.8 10.3 21 123-143 110-130 (773)
330 2cxx_A Probable GTP-binding pr 94.9 0.014 4.8E-07 44.6 3.0 22 124-145 3-24 (190)
331 1z0j_A RAB-22, RAS-related pro 94.9 0.013 4.5E-07 43.7 2.7 24 122-145 6-29 (170)
332 2j37_W Signal recognition part 94.9 0.029 1E-06 50.7 5.4 25 120-144 99-123 (504)
333 4a1f_A DNAB helicase, replicat 94.9 0.041 1.4E-06 47.1 6.0 49 123-175 47-95 (338)
334 3kta_A Chromosome segregation 94.9 0.015 5.3E-07 44.5 3.1 22 123-144 27-48 (182)
335 1z08_A RAS-related protein RAB 94.9 0.013 4.5E-07 43.8 2.6 25 121-145 5-29 (170)
336 1ek0_A Protein (GTP-binding pr 94.9 0.013 4.6E-07 43.7 2.7 22 124-145 5-26 (170)
337 1c1y_A RAS-related protein RAP 94.9 0.013 4.3E-07 43.7 2.5 23 123-145 4-26 (167)
338 2qm8_A GTPase/ATPase; G protei 94.9 0.025 8.6E-07 48.4 4.7 25 120-144 53-77 (337)
339 1nrj_B SR-beta, signal recogni 94.9 0.014 4.7E-07 46.0 2.8 26 120-145 10-35 (218)
340 2ocp_A DGK, deoxyguanosine kin 94.9 0.017 5.7E-07 46.7 3.4 23 123-145 3-25 (241)
341 1u8z_A RAS-related protein RAL 94.9 0.02 6.9E-07 42.5 3.6 24 122-145 4-27 (168)
342 1ky3_A GTP-binding protein YPT 94.9 0.018 6.1E-07 43.5 3.4 26 120-145 6-31 (182)
343 2bbs_A Cystic fibrosis transme 94.9 0.014 4.7E-07 49.0 2.9 23 123-145 65-87 (290)
344 1nij_A Hypothetical protein YJ 94.9 0.016 5.5E-07 49.1 3.3 25 121-145 3-27 (318)
345 2www_A Methylmalonic aciduria 94.9 0.017 5.7E-07 49.7 3.4 25 120-144 72-96 (349)
346 1g16_A RAS-related protein SEC 94.8 0.014 4.9E-07 43.6 2.7 23 123-145 4-26 (170)
347 1pui_A ENGB, probable GTP-bind 94.8 0.01 3.5E-07 46.4 1.9 24 122-145 26-49 (210)
348 2aka_B Dynamin-1; fusion prote 94.8 0.036 1.2E-06 45.9 5.4 41 105-145 9-49 (299)
349 1f6b_A SAR1; gtpases, N-termin 94.8 0.02 6.7E-07 44.7 3.6 22 123-144 26-47 (198)
350 3q85_A GTP-binding protein REM 94.8 0.02 6.7E-07 42.8 3.4 22 123-144 3-24 (169)
351 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.015 5E-07 43.9 2.7 25 121-145 6-30 (177)
352 1r8s_A ADP-ribosylation factor 94.8 0.014 4.8E-07 43.5 2.5 20 125-144 3-22 (164)
353 2hxs_A RAB-26, RAS-related pro 94.8 0.025 8.4E-07 42.7 4.0 25 121-145 5-29 (178)
354 2qnr_A Septin-2, protein NEDD5 94.8 0.015 5.2E-07 48.9 3.0 21 124-144 20-40 (301)
355 2p67_A LAO/AO transport system 94.8 0.03 1E-06 47.9 4.9 25 120-144 54-78 (341)
356 1m7b_A RND3/RHOE small GTP-bin 94.8 0.02 6.8E-07 43.8 3.4 26 120-145 5-30 (184)
357 1ypw_A Transitional endoplasmi 94.8 0.019 6.4E-07 55.0 3.9 52 94-145 476-534 (806)
358 1tq4_A IIGP1, interferon-induc 94.8 0.015 5E-07 51.3 2.9 24 121-144 68-91 (413)
359 2iwr_A Centaurin gamma 1; ANK 94.8 0.013 4.6E-07 44.3 2.4 24 122-145 7-30 (178)
360 1lw7_A Transcriptional regulat 94.7 0.017 5.7E-07 49.9 3.2 23 122-144 170-192 (365)
361 1z47_A CYSA, putative ABC-tran 94.7 0.015 5.2E-07 50.2 2.9 22 123-144 42-63 (355)
362 3v9p_A DTMP kinase, thymidylat 94.7 0.032 1.1E-06 45.0 4.6 25 122-146 25-49 (227)
363 3eph_A TRNA isopentenyltransfe 94.7 0.018 6E-07 50.6 3.3 22 123-144 3-24 (409)
364 1r2q_A RAS-related protein RAB 94.7 0.015 5.1E-07 43.4 2.5 24 122-145 6-29 (170)
365 3vr4_A V-type sodium ATPase ca 94.7 0.043 1.5E-06 50.1 5.8 48 107-163 222-269 (600)
366 3t1o_A Gliding protein MGLA; G 94.7 0.015 5E-07 44.7 2.5 24 121-144 13-36 (198)
367 2r8r_A Sensor protein; KDPD, P 94.7 0.041 1.4E-06 44.4 5.2 97 123-226 7-127 (228)
368 3ihw_A Centg3; RAS, centaurin, 94.7 0.015 5.2E-07 44.8 2.6 25 121-145 19-43 (184)
369 1m2o_B GTP-binding protein SAR 94.7 0.016 5.5E-07 44.8 2.7 23 123-145 24-46 (190)
370 2yv5_A YJEQ protein; hydrolase 94.7 0.024 8.3E-07 47.7 4.0 33 104-146 156-188 (302)
371 2y8e_A RAB-protein 6, GH09086P 94.7 0.017 5.9E-07 43.5 2.8 23 123-145 15-37 (179)
372 3d31_A Sulfate/molybdate ABC t 94.7 0.015 5.2E-07 50.1 2.7 23 123-145 27-49 (348)
373 3c5c_A RAS-like protein 12; GD 94.7 0.016 5.5E-07 44.6 2.7 24 122-145 21-44 (187)
374 2bme_A RAB4A, RAS-related prot 94.7 0.017 6E-07 43.9 2.9 25 121-145 9-33 (186)
375 1cp2_A CP2, nitrogenase iron p 94.7 0.038 1.3E-06 45.1 5.1 37 123-161 2-38 (269)
376 4dsu_A GTPase KRAS, isoform 2B 94.7 0.017 5.7E-07 44.1 2.7 23 123-145 5-27 (189)
377 3tui_C Methionine import ATP-b 94.7 0.016 5.6E-07 50.1 2.9 51 183-233 178-231 (366)
378 3rlf_A Maltose/maltodextrin im 94.7 0.017 5.7E-07 50.4 2.9 22 123-144 30-51 (381)
379 2yyz_A Sugar ABC transporter, 94.6 0.017 5.7E-07 50.0 2.9 22 123-144 30-51 (359)
380 2it1_A 362AA long hypothetical 94.6 0.017 5.9E-07 50.0 2.9 23 123-145 30-52 (362)
381 3tw8_B RAS-related protein RAB 94.6 0.021 7.1E-07 43.1 3.1 26 120-145 7-32 (181)
382 1g29_1 MALK, maltose transport 94.6 0.017 5.9E-07 50.2 2.9 22 123-144 30-51 (372)
383 3hjn_A DTMP kinase, thymidylat 94.6 0.045 1.5E-06 43.0 5.1 49 124-174 2-50 (197)
384 1oxx_K GLCV, glucose, ABC tran 94.6 0.014 4.8E-07 50.4 2.2 22 123-144 32-53 (353)
385 1v43_A Sugar-binding transport 94.6 0.018 6.2E-07 50.0 2.9 22 123-144 38-59 (372)
386 1z0f_A RAB14, member RAS oncog 94.6 0.024 8.1E-07 42.7 3.3 26 120-145 13-38 (179)
387 1upt_A ARL1, ADP-ribosylation 94.5 0.025 8.6E-07 42.3 3.5 24 122-145 7-30 (171)
388 4bas_A ADP-ribosylation factor 94.5 0.022 7.4E-07 43.9 3.1 26 120-145 15-40 (199)
389 2cjw_A GTP-binding protein GEM 94.5 0.018 6.2E-07 44.7 2.6 23 122-144 6-28 (192)
390 1ega_A Protein (GTP-binding pr 94.5 0.022 7.7E-07 47.8 3.4 26 120-145 6-31 (301)
391 1p5z_B DCK, deoxycytidine kina 94.5 0.013 4.6E-07 48.0 2.0 25 121-145 23-47 (263)
392 3t5g_A GTP-binding protein RHE 94.5 0.023 7.9E-07 43.1 3.2 25 121-145 5-29 (181)
393 1moz_A ARL1, ADP-ribosylation 94.5 0.023 7.9E-07 43.1 3.2 24 122-145 18-41 (183)
394 2a9k_A RAS-related protein RAL 94.5 0.019 6.5E-07 43.6 2.7 25 121-145 17-41 (187)
395 2efe_B Small GTP-binding prote 94.5 0.019 6.5E-07 43.5 2.6 25 121-145 11-35 (181)
396 2fg5_A RAB-22B, RAS-related pr 94.5 0.021 7.1E-07 44.1 2.9 24 122-145 23-46 (192)
397 1p9r_A General secretion pathw 94.4 0.058 2E-06 47.6 6.0 23 122-144 167-189 (418)
398 2bov_A RAla, RAS-related prote 94.4 0.028 9.7E-07 43.5 3.6 26 120-145 12-37 (206)
399 3bwd_D RAC-like GTP-binding pr 94.4 0.02 6.7E-07 43.4 2.6 24 122-145 8-31 (182)
400 3llu_A RAS-related GTP-binding 94.4 0.021 7.2E-07 44.3 2.9 24 122-145 20-43 (196)
401 3bc1_A RAS-related protein RAB 94.4 0.027 9.3E-07 42.9 3.4 26 120-145 9-34 (195)
402 2atv_A RERG, RAS-like estrogen 94.4 0.02 6.8E-07 44.3 2.7 24 122-145 28-51 (196)
403 3cbq_A GTP-binding protein REM 94.4 0.022 7.5E-07 44.3 2.9 24 120-143 21-44 (195)
404 3kkq_A RAS-related protein M-R 94.4 0.031 1E-06 42.5 3.7 26 120-145 16-41 (183)
405 3iev_A GTP-binding protein ERA 94.4 0.024 8.3E-07 47.7 3.3 27 119-145 7-33 (308)
406 3oes_A GTPase rhebl1; small GT 94.4 0.021 7.1E-07 44.4 2.7 25 121-145 23-47 (201)
407 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.028 9.5E-07 42.7 3.4 24 122-145 5-28 (186)
408 3ld9_A DTMP kinase, thymidylat 94.4 0.049 1.7E-06 43.8 4.9 27 120-146 19-45 (223)
409 4tmk_A Protein (thymidylate ki 94.4 0.058 2E-06 43.0 5.4 52 123-175 4-55 (213)
410 1gwn_A RHO-related GTP-binding 94.4 0.021 7.4E-07 44.8 2.8 24 122-145 28-51 (205)
411 2qu8_A Putative nucleolar GTP- 94.4 0.026 8.9E-07 44.9 3.3 26 120-145 27-52 (228)
412 3gd7_A Fusion complex of cysti 94.4 0.022 7.6E-07 49.8 3.1 22 123-144 48-69 (390)
413 3thx_A DNA mismatch repair pro 94.4 0.042 1.4E-06 53.3 5.3 21 122-142 662-682 (934)
414 3lxx_A GTPase IMAP family memb 94.4 0.027 9.3E-07 45.3 3.4 26 120-145 27-52 (239)
415 2h17_A ADP-ribosylation factor 94.4 0.024 8.3E-07 43.2 3.0 24 122-145 21-44 (181)
416 2g6b_A RAS-related protein RAB 94.4 0.02 6.9E-07 43.3 2.5 25 121-145 9-33 (180)
417 1zbd_A Rabphilin-3A; G protein 94.4 0.021 7.2E-07 44.3 2.7 24 122-145 8-31 (203)
418 1ksh_A ARF-like protein 2; sma 94.3 0.021 7.3E-07 43.6 2.7 25 122-146 18-42 (186)
419 3kjh_A CO dehydrogenase/acetyl 94.3 0.046 1.6E-06 43.8 4.8 40 125-166 3-42 (254)
420 3lv8_A DTMP kinase, thymidylat 94.3 0.054 1.8E-06 43.9 5.1 38 122-160 27-64 (236)
421 3dz8_A RAS-related protein RAB 94.3 0.022 7.5E-07 43.9 2.7 24 122-145 23-46 (191)
422 1vg8_A RAS-related protein RAB 94.3 0.029 9.9E-07 43.5 3.4 26 120-145 6-31 (207)
423 2gf0_A GTP-binding protein DI- 94.3 0.031 1.1E-06 43.0 3.6 25 121-145 7-31 (199)
424 2oil_A CATX-8, RAS-related pro 94.3 0.029 9.8E-07 43.2 3.3 25 121-145 24-48 (193)
425 1h65_A Chloroplast outer envel 94.3 0.044 1.5E-06 45.0 4.7 27 120-146 37-63 (270)
426 2ew1_A RAS-related protein RAB 94.3 0.03 1E-06 43.8 3.5 25 121-145 25-49 (201)
427 2h92_A Cytidylate kinase; ross 94.3 0.018 6.3E-07 45.5 2.2 22 123-144 4-25 (219)
428 3k53_A Ferrous iron transport 94.3 0.03 1E-06 46.1 3.6 24 122-145 3-26 (271)
429 2axn_A 6-phosphofructo-2-kinas 94.3 0.025 8.5E-07 51.4 3.3 24 121-144 34-57 (520)
430 2gf9_A RAS-related protein RAB 94.3 0.022 7.6E-07 43.7 2.6 24 122-145 22-45 (189)
431 2o52_A RAS-related protein RAB 94.3 0.024 8.3E-07 44.1 2.9 25 121-145 24-48 (200)
432 2afh_E Nitrogenase iron protei 94.2 0.051 1.7E-06 45.0 4.9 37 123-161 3-39 (289)
433 3clv_A RAB5 protein, putative; 94.2 0.032 1.1E-06 42.8 3.5 24 122-145 7-30 (208)
434 2ffh_A Protein (FFH); SRP54, s 94.2 0.039 1.3E-06 48.8 4.4 25 121-145 97-121 (425)
435 2bcg_Y Protein YP2, GTP-bindin 94.2 0.024 8.4E-07 44.1 2.8 25 121-145 7-31 (206)
436 2j1l_A RHO-related GTP-binding 94.2 0.026 8.7E-07 44.5 2.9 25 121-145 33-57 (214)
437 3tkl_A RAS-related protein RAB 94.2 0.023 8E-07 43.6 2.6 25 121-145 15-39 (196)
438 3gmt_A Adenylate kinase; ssgci 94.2 0.022 7.6E-07 46.1 2.6 24 122-145 8-31 (230)
439 2fh5_B SR-beta, signal recogni 94.2 0.023 8E-07 44.5 2.7 25 121-145 6-30 (214)
440 1zd9_A ADP-ribosylation factor 94.2 0.023 7.8E-07 43.7 2.5 24 122-145 22-45 (188)
441 2q3h_A RAS homolog gene family 94.2 0.024 8.3E-07 43.9 2.7 24 122-145 20-43 (201)
442 3def_A T7I23.11 protein; chlor 94.2 0.05 1.7E-06 44.5 4.7 27 120-146 34-60 (262)
443 3reg_A RHO-like small GTPase; 94.2 0.023 7.9E-07 43.8 2.5 25 121-145 22-46 (194)
444 1zj6_A ADP-ribosylation factor 94.1 0.038 1.3E-06 42.2 3.7 24 122-145 16-39 (187)
445 3cr8_A Sulfate adenylyltranfer 94.1 0.025 8.5E-07 51.7 3.0 24 122-145 369-392 (552)
446 2gza_A Type IV secretion syste 94.1 0.022 7.6E-07 49.2 2.6 23 123-145 176-198 (361)
447 1x3s_A RAS-related protein RAB 94.1 0.025 8.5E-07 43.4 2.6 24 122-145 15-38 (195)
448 2obl_A ESCN; ATPase, hydrolase 94.1 0.026 9E-07 48.5 3.0 24 122-145 71-94 (347)
449 2a5j_A RAS-related protein RAB 94.1 0.023 8E-07 43.7 2.4 24 122-145 21-44 (191)
450 1u0l_A Probable GTPase ENGC; p 94.1 0.037 1.3E-06 46.5 3.8 33 104-145 160-192 (301)
451 2h57_A ADP-ribosylation factor 94.1 0.023 8E-07 43.6 2.4 24 123-146 22-45 (190)
452 1g8f_A Sulfate adenylyltransfe 94.1 0.032 1.1E-06 50.5 3.6 47 96-146 373-419 (511)
453 2g3y_A GTP-binding protein GEM 94.1 0.026 8.8E-07 44.9 2.7 23 122-144 37-59 (211)
454 1jwy_B Dynamin A GTPase domain 94.1 0.061 2.1E-06 44.9 5.2 26 120-145 22-47 (315)
455 2rcn_A Probable GTPase ENGC; Y 94.1 0.027 9.2E-07 48.6 2.9 24 123-146 216-239 (358)
456 2b6h_A ADP-ribosylation factor 94.0 0.036 1.2E-06 42.9 3.4 24 122-145 29-52 (192)
457 4b3f_X DNA-binding protein smu 94.0 0.058 2E-06 50.2 5.4 47 124-174 207-254 (646)
458 2atx_A Small GTP binding prote 94.0 0.029 9.9E-07 43.2 2.9 24 122-145 18-41 (194)
459 2il1_A RAB12; G-protein, GDP, 94.0 0.024 8.2E-07 43.8 2.4 24 122-145 26-49 (192)
460 4dhe_A Probable GTP-binding pr 94.0 0.026 8.7E-07 44.5 2.5 26 121-146 28-53 (223)
461 2fv8_A H6, RHO-related GTP-bin 94.0 0.028 9.6E-07 43.9 2.8 23 123-145 26-48 (207)
462 2zts_A Putative uncharacterize 94.0 0.027 9.3E-07 45.1 2.7 39 122-161 30-68 (251)
463 1q57_A DNA primase/helicase; d 94.0 0.091 3.1E-06 47.3 6.5 48 122-172 242-289 (503)
464 1mky_A Probable GTP-binding pr 94.0 0.051 1.7E-06 48.1 4.7 48 98-145 151-203 (439)
465 1c9k_A COBU, adenosylcobinamid 94.0 0.054 1.9E-06 42.1 4.3 35 125-165 2-36 (180)
466 2hup_A RAS-related protein RAB 94.0 0.03 1E-06 43.6 2.9 25 121-145 28-52 (201)
467 1z06_A RAS-related protein RAB 93.9 0.037 1.3E-06 42.4 3.3 25 121-145 19-43 (189)
468 3cph_A RAS-related protein SEC 93.9 0.028 9.7E-07 43.8 2.6 24 122-145 20-43 (213)
469 2x77_A ADP-ribosylation factor 93.9 0.028 9.5E-07 43.1 2.5 24 122-145 22-45 (189)
470 2qag_B Septin-6, protein NEDD5 93.9 0.026 8.8E-07 49.9 2.5 22 124-145 44-65 (427)
471 2q6t_A DNAB replication FORK h 93.9 0.09 3.1E-06 46.6 6.1 50 122-174 200-249 (444)
472 4dzz_A Plasmid partitioning pr 93.9 0.049 1.7E-06 42.3 4.0 40 123-164 2-42 (206)
473 2gco_A H9, RHO-related GTP-bin 93.9 0.032 1.1E-06 43.4 2.9 23 123-145 26-48 (201)
474 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.025 8.6E-07 48.2 2.4 23 123-145 172-194 (330)
475 1t9h_A YLOQ, probable GTPase E 93.9 0.021 7.1E-07 48.3 1.8 23 123-145 174-196 (307)
476 2p5s_A RAS and EF-hand domain 93.8 0.036 1.2E-06 42.9 3.1 25 121-145 27-51 (199)
477 4dkx_A RAS-related protein RAB 93.8 0.03 1E-06 44.7 2.6 22 124-145 15-36 (216)
478 3fkq_A NTRC-like two-domain pr 93.8 0.061 2.1E-06 46.5 4.8 41 119-161 140-181 (373)
479 2j9r_A Thymidine kinase; TK1, 93.8 0.092 3.2E-06 41.9 5.4 100 122-225 28-137 (214)
480 1bif_A 6-phosphofructo-2-kinas 93.8 0.033 1.1E-06 49.7 3.2 24 122-145 39-62 (469)
481 2fu5_C RAS-related protein RAB 93.8 0.019 6.4E-07 43.7 1.3 25 121-145 7-31 (183)
482 4gzl_A RAS-related C3 botulinu 93.8 0.034 1.1E-06 43.5 2.8 24 122-145 30-53 (204)
483 3cwq_A Para family chromosome 93.8 0.073 2.5E-06 42.0 4.8 42 124-168 2-44 (209)
484 3iqw_A Tail-anchored protein t 93.7 0.074 2.5E-06 45.4 5.0 24 121-144 15-38 (334)
485 2j0v_A RAC-like GTP-binding pr 93.7 0.054 1.8E-06 42.3 3.9 25 121-145 8-32 (212)
486 2f7s_A C25KG, RAS-related prot 93.7 0.033 1.1E-06 43.7 2.6 24 122-145 25-48 (217)
487 2npi_A Protein CLP1; CLP1-PCF1 93.7 0.028 9.4E-07 50.3 2.4 23 123-145 139-161 (460)
488 3fdi_A Uncharacterized protein 93.7 0.038 1.3E-06 43.5 3.0 24 122-145 6-29 (201)
489 2xtp_A GTPase IMAP family memb 93.7 0.045 1.5E-06 44.5 3.5 25 121-145 21-45 (260)
490 2qag_C Septin-7; cell cycle, c 93.7 0.03 1E-06 49.4 2.6 21 125-145 34-54 (418)
491 3io3_A DEHA2D07832P; chaperone 93.6 0.071 2.4E-06 45.8 4.8 25 120-144 16-40 (348)
492 3ea0_A ATPase, para family; al 93.6 0.075 2.6E-06 42.5 4.7 39 121-161 3-43 (245)
493 3q3j_B RHO-related GTP-binding 93.6 0.034 1.2E-06 43.9 2.5 24 122-145 27-50 (214)
494 1wf3_A GTP-binding protein; GT 93.6 0.046 1.6E-06 46.0 3.4 26 120-145 5-30 (301)
495 2dpy_A FLII, flagellum-specifi 93.5 0.038 1.3E-06 49.1 3.0 24 122-145 157-180 (438)
496 2r6a_A DNAB helicase, replicat 93.5 0.049 1.7E-06 48.5 3.7 40 122-162 203-242 (454)
497 3tqf_A HPR(Ser) kinase; transf 93.4 0.053 1.8E-06 42.0 3.2 22 123-144 17-38 (181)
498 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.051 1.8E-06 40.6 3.2 22 123-144 24-45 (149)
499 3bgw_A DNAB-like replicative h 93.4 0.063 2.2E-06 47.7 4.1 39 122-162 197-235 (444)
500 4hlc_A DTMP kinase, thymidylat 93.3 0.071 2.4E-06 42.2 4.0 24 123-146 3-26 (205)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=1.8e-25 Score=206.22 Aligned_cols=137 Identities=22% Similarity=0.332 Sum_probs=114.1
Q ss_pred ccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc--ccccccccCeEEEEEecCCC--CHHHHHHHH
Q 045522 98 CGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN--HDEVKRKFDKILWVCVSDTF--DEFRVAKAM 173 (246)
Q Consensus 98 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 173 (246)
+||+.++++|.++|.... ....++|+|+||||+||||||+.+|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 24679999999999999999999998 67889999999999999875 788999999
Q ss_pred HHHccCCC---------C-------------CCCC-eEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhHHh
Q 045522 174 VEALDGHE---------S-------------RLGK-RFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSVTS 230 (246)
Q Consensus 174 ~~~~~~~~---------~-------------~~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~ 230 (246)
+.+++... . +.++ ||||||||||+.+...|.. .+||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 99887541 0 5675 9999999999963212221 17899999999999999
Q ss_pred hcCC-CceEeCCCCCC
Q 045522 231 MMGS-TDIISVKELTK 245 (246)
Q Consensus 231 ~~~~-~~~~~l~~L~~ 245 (246)
.++. ...|+|++|+.
T Consensus 280 ~~~~~~~~~~l~~L~~ 295 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEI 295 (549)
T ss_dssp GCCSCEEEEECCCCCH
T ss_pred HcCCCCeEEECCCCCH
Confidence 8864 57899999975
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.83 E-value=6.7e-21 Score=189.01 Aligned_cols=141 Identities=29% Similarity=0.377 Sum_probs=106.9
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-cccc-CeEEEEEecCCCC--HH
Q 045522 92 IDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-KRKF-DKILWVCVSDTFD--EF 167 (246)
Q Consensus 92 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~ 167 (246)
...+.|+||++++++|.+.|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997654 56799999999999999999999997543 4445 7888999988543 34
Q ss_pred HHHHHHHHHccCCCC-------------------CC--CCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 168 RVAKAMVEALDGHES-------------------RL--GKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 168 ~~~~~i~~~~~~~~~-------------------~~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
..+..++..+..... +. ++|+||||||+|+. ..|.. ..+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 446666666654321 33 45999999999976 33333 25789999999999
Q ss_pred hHHhh-cCCCceEeCCC-CCC
Q 045522 227 SVTSM-MGSTDIISVKE-LTK 245 (246)
Q Consensus 227 ~va~~-~~~~~~~~l~~-L~~ 245 (246)
.++.. ++....+++++ |++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~ 288 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGR 288 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCH
T ss_pred HHHHhhcCCceEEEecCCCCH
Confidence 99865 45578888885 764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.83 E-value=1.9e-21 Score=186.69 Aligned_cols=132 Identities=24% Similarity=0.269 Sum_probs=104.1
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCe-EEEEEecCCCCHHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDK-ILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~ 174 (246)
..+||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 3689999999999999999999998788899986 99999999988878777776
Q ss_pred HHccC-------C--C--C------------------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC
Q 045522 175 EALDG-------H--E--S------------------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 175 ~~~~~-------~--~--~------------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~ 225 (246)
..+.. . . . ..++|+||||||+|+. ..|..+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 64211 0 0 0 2579999999999985 556543 2 68999999999
Q ss_pred hhHHhhcCCCceEeCC
Q 045522 226 GSVTSMMGSTDIISVK 241 (246)
Q Consensus 226 ~~va~~~~~~~~~~l~ 241 (246)
+.++..+.....|+|+
T Consensus 275 ~~Va~~l~g~~vy~Le 290 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHIS 290 (1221)
T ss_dssp SHHHHHHHHHSSCEEE
T ss_pred hHHHHhcCCCeEEEec
Confidence 9998755433455555
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.77 E-value=4.7e-19 Score=164.24 Aligned_cols=137 Identities=28% Similarity=0.342 Sum_probs=98.2
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-cccc-CeEEEEEecCCCCHHHHH
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-KRKF-DKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~ 170 (246)
..+.||||+.++++|.+.|.... ...++|+|+|+||+||||||..++++... ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 44679999999999999997543 45689999999999999999999997655 7789 58999999765 333333
Q ss_pred HHH---HHHccCC------CC-------------CC--CCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 171 KAM---VEALDGH------ES-------------RL--GKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 171 ~~i---~~~~~~~------~~-------------~~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
..+ +..++.. .. +. .+++||||||+|+. . .+. .+ .+|++||||||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~---~l~-~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W---VLK-AF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H---HHH-TT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H---HHH-Hh---cCCCeEEEECCCc
Confidence 333 3344311 00 22 27899999999874 2 222 22 4689999999999
Q ss_pred hHHhhcCCCceEeC---CCCC
Q 045522 227 SVTSMMGSTDIISV---KELT 244 (246)
Q Consensus 227 ~va~~~~~~~~~~l---~~L~ 244 (246)
.++..++ ...+++ ++|+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~ 287 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLG 287 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCC
T ss_pred HHHHhcC-CCceEeecCCCCC
Confidence 9887654 344544 3565
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.33 E-value=1.3e-12 Score=115.25 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=95.4
Q ss_pred CCccccccchHHHHHHHh-hCCCCCCCCCeEEEEE--EeeCCchHHHHHHHHhcccccc---cccC-eEEEEEecCCCCH
Q 045522 94 EEEICGRVDEKNELLSKL-LCESSEQQKGLHIISI--VGMGGIGKNTLAQLTSNHDEVK---RKFD-KILWVCVSDTFDE 166 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~ 166 (246)
+..++||+++++++.+.| .............+.| +|++|+||||||+.+++..... ..|. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999888 4211000012356666 9999999999999999843221 0122 4678887777788
Q ss_pred HHHHHHHHHHccCCCC----------------C--CCCeEEEEEeCCCCCCc------cCHHHHHHhhcCC---C--CCc
Q 045522 167 FRVAKAMVEALDGHES----------------R--LGKRFLLVLDDVWDGDY------IKWKPFYHCLKNG---L--HES 217 (246)
Q Consensus 167 ~~~~~~i~~~~~~~~~----------------~--~~kr~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~gs 217 (246)
..++..++..++...+ + .+++++|||||++.... ..+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8888888888754321 1 26799999999977421 2233333333321 2 345
Q ss_pred EEEEecCChhHHhhc--------CC-CceEeCCCCCC
Q 045522 218 KILVTTRKGSVTSMM--------GS-TDIISVKELTK 245 (246)
Q Consensus 218 ~IliTtR~~~va~~~--------~~-~~~~~l~~L~~ 245 (246)
.+|+||+...+...+ .. ...+++++|+.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 588888765543211 11 22388888864
No 6
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.31 E-value=1.6e-11 Score=98.53 Aligned_cols=145 Identities=12% Similarity=0.034 Sum_probs=93.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++.......-...+.++.+...+...+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 468999999999999986542 23489999999999999999987432111112344556555555544444333
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhH-Hh-hcCCCceEeCCCCCC
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSV-TS-MMGSTDIISVKELTK 245 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v-a~-~~~~~~~~~l~~L~~ 245 (246)
..........+++.+|||||++.........|...+.....++.+|+||+...- .. .......+.+.+++.
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~ 163 (226)
T 2chg_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK 163 (226)
T ss_dssp HHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred HHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCH
Confidence 332221123467899999999887555566677777665667888888876531 11 112234777877763
No 7
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=1.6e-11 Score=107.42 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=101.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc-cCeEEEEEecCCCCHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK-FDKILWVCVSDTFDEFRVAKAM 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i 173 (246)
+.++||+++++.+..++........+..+.+.|+|++|+|||||++.+++.. ... -...+|+++....+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999998865211011233589999999999999999998843 332 1356788888877888888888
Q ss_pred HHHccCCCC------------------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC----CCcEEEEecCChhHHhh
Q 045522 174 VEALDGHES------------------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL----HESKILVTTRKGSVTSM 231 (246)
Q Consensus 174 ~~~~~~~~~------------------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~IliTtR~~~va~~ 231 (246)
+..++.... ..+++.+||||+++..+......|...+.... .+..||++|+...+...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 887754322 12568899999998875455556655554321 36678888877654433
Q ss_pred cCC-------CceEeCCCCCC
Q 045522 232 MGS-------TDIISVKELTK 245 (246)
Q Consensus 232 ~~~-------~~~~~l~~L~~ 245 (246)
+.. ...+.+++++.
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~ 195 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTK 195 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBH
T ss_pred hCHHhhhcCCCceEEeCCCCH
Confidence 321 23678887763
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.26 E-value=1.5e-11 Score=107.26 Aligned_cols=148 Identities=20% Similarity=0.170 Sum_probs=93.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc----cccCeEEEEEecCCCCHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK----RKFDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~ 170 (246)
..++||+++++.+..+|.... .......+.|+|++|+||||||+.+++..... ..-...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 689999999999999885431 11345688999999999999999998843211 002356788888777877777
Q ss_pred HHHHHHccCCCC------------------CCCCeEEEEEeCCCCCCcc--CHHHHHHhhc--CC---CCCcEEEEecCC
Q 045522 171 KAMVEALDGHES------------------RLGKRFLLVLDDVWDGDYI--KWKPFYHCLK--NG---LHESKILVTTRK 225 (246)
Q Consensus 171 ~~i~~~~~~~~~------------------~~~kr~LlVlDdv~~~~~~--~~~~l~~~l~--~~---~~gs~IliTtR~ 225 (246)
..++..++...+ ..+++.+||||+++..... ..+.+...+. .. ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 777777654221 2456889999999765322 2233333332 11 345567777766
Q ss_pred hhH--------HhhcCCCceEeCCCCCC
Q 045522 226 GSV--------TSMMGSTDIISVKELTK 245 (246)
Q Consensus 226 ~~v--------a~~~~~~~~~~l~~L~~ 245 (246)
... ...++ ...+.+++++.
T Consensus 177 ~~~~~~l~~~l~~r~~-~~~i~l~~l~~ 203 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLG-EVELVFPPYTA 203 (387)
T ss_dssp STTSSSSCHHHHTTTT-SEECCBCCCCH
T ss_pred CchHhhhCHHHHhcCC-CeEEeeCCCCH
Confidence 522 22111 14677777753
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=5.2e-12 Score=110.05 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=92.7
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc---cCeEEEEEecCCCCHHHHH
Q 045522 94 EEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK---FDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~~~~~~~~~~~~ 170 (246)
+..++||+++++.+.+++..... ......+.|+|++|+||||||+.+++. .... -...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36899999999999998864210 133568899999999999999999983 3333 2356788866555555555
Q ss_pred HHHHHHccCCCC------------------CCCCeEEEEEeCCCCCC----ccCHHHHHHhhcC-CCCCcEEEEecCChh
Q 045522 171 KAMVEALDGHES------------------RLGKRFLLVLDDVWDGD----YIKWKPFYHCLKN-GLHESKILVTTRKGS 227 (246)
Q Consensus 171 ~~i~~~~~~~~~------------------~~~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~IliTtR~~~ 227 (246)
..++..++.... ..+++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 555544432110 23458999999996631 1334444444422 223556788887664
Q ss_pred HHhhcCC-------CceEeCCCCCC
Q 045522 228 VTSMMGS-------TDIISVKELTK 245 (246)
Q Consensus 228 va~~~~~-------~~~~~l~~L~~ 245 (246)
....+.. ...+++++|+.
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCH
Confidence 4332221 24788888764
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1e-11 Score=108.59 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=93.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc----c--cCeEEEEEecCCC-CHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR----K--FDKILWVCVSDTF-DEF 167 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~~~~~~-~~~ 167 (246)
..++||+++++++..+|..... ....+.+.|+|++|+|||+||+.+++...... . ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999887754210 13346899999999999999999998432110 1 3467888877766 777
Q ss_pred HHHHHHHHHccCCC--------C---------CCCCeEEEEEeCCCCCCccC-HHH-HHHhhcCCCCCcEEEEecCChhH
Q 045522 168 RVAKAMVEALDGHE--------S---------RLGKRFLLVLDDVWDGDYIK-WKP-FYHCLKNGLHESKILVTTRKGSV 228 (246)
Q Consensus 168 ~~~~~i~~~~~~~~--------~---------~~~kr~LlVlDdv~~~~~~~-~~~-l~~~l~~~~~gs~IliTtR~~~v 228 (246)
.++..++..+.+.. . +..++.+||||+++...... .+. +...+... .+..+|+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 77777777762110 0 23344499999997642221 233 32323222 66788888886532
Q ss_pred --------HhhcCCCceEeCCCCCC
Q 045522 229 --------TSMMGSTDIISVKELTK 245 (246)
Q Consensus 229 --------a~~~~~~~~~~l~~L~~ 245 (246)
...+ ...+++++++.
T Consensus 177 ~~~l~~~l~sr~--~~~i~l~~l~~ 199 (384)
T 2qby_B 177 RDYMEPRVLSSL--GPSVIFKPYDA 199 (384)
T ss_dssp TTTSCHHHHHTC--CCEEEECCCCH
T ss_pred HhhhCHHHHhcC--CCeEEECCCCH
Confidence 1211 23788888764
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=4.4e-11 Score=103.07 Aligned_cols=138 Identities=13% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-----CCHH
Q 045522 93 DEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT-----FDEF 167 (246)
Q Consensus 93 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~ 167 (246)
..+.++||+++++.|.+ +.. +++.|+|++|+|||+|++.+.+.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 44679999999999999 621 589999999999999999998843 22 3578887642 2334
Q ss_pred HHHHHHHHHcc--------------C-------------------CCC----------CCCCeEEEEEeCCCCCCc---c
Q 045522 168 RVAKAMVEALD--------------G-------------------HES----------RLGKRFLLVLDDVWDGDY---I 201 (246)
Q Consensus 168 ~~~~~i~~~~~--------------~-------------------~~~----------~~~kr~LlVlDdv~~~~~---~ 201 (246)
.++..+.+.+. . ... ...++.+|||||++..+. .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 44433333220 0 001 111489999999977421 2
Q ss_pred CHHHHHHhhcCCCCCcEEEEecCChhHHh-h---------c-CC-CceEeCCCCCC
Q 045522 202 KWKPFYHCLKNGLHESKILVTTRKGSVTS-M---------M-GS-TDIISVKELTK 245 (246)
Q Consensus 202 ~~~~l~~~l~~~~~gs~IliTtR~~~va~-~---------~-~~-~~~~~l~~L~~ 245 (246)
.+..+...+.+..++..+|+|++...... . + +. ...+++.+|+.
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~ 211 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR 211 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCH
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCH
Confidence 33333333332224678999999865422 1 1 11 35788888874
No 12
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.21 E-value=1.5e-11 Score=105.82 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=89.3
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC------C
Q 045522 92 IDEEEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF------D 165 (246)
Q Consensus 92 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~ 165 (246)
...+.|+||+.+++.|.+.+.. . +++.|+|++|+|||||++.+++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999998843 1 689999999999999999998743 1 6788765432 4
Q ss_pred HHHHHHHHHHHccC-------------------C---CC-------C----C-CCeEEEEEeCCCCCCc------cC-HH
Q 045522 166 EFRVAKAMVEALDG-------------------H---ES-------R----L-GKRFLLVLDDVWDGDY------IK-WK 204 (246)
Q Consensus 166 ~~~~~~~i~~~~~~-------------------~---~~-------~----~-~kr~LlVlDdv~~~~~------~~-~~ 204 (246)
...++..+...+.. . .. + . .++.+|||||++..+. .. +.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55555555554322 0 01 1 1 1389999999977532 12 23
Q ss_pred HHHHhhcCCCCCcEEEEecCChhH-Hhh---------c-CC-CceEeCCCCCC
Q 045522 205 PFYHCLKNGLHESKILVTTRKGSV-TSM---------M-GS-TDIISVKELTK 245 (246)
Q Consensus 205 ~l~~~l~~~~~gs~IliTtR~~~v-a~~---------~-~~-~~~~~l~~L~~ 245 (246)
.|...+.. .++..+|+|++...+ ... + +. ...+++.+|+.
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~ 205 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDK 205 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCH
Confidence 33333322 256889999887653 221 1 11 34788888874
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.19 E-value=9.5e-11 Score=94.96 Aligned_cols=144 Identities=14% Similarity=0.208 Sum_probs=93.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc-------------------cCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK-------------------FDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 155 (246)
.+++||+..++.+..++.... ....+.|+|++|+||||||+.+++....... +...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 469999999999999986533 2348899999999999999998874322111 1122
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHh-hcC
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTS-MMG 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~-~~~ 233 (246)
+.+..... .....+..++..+... ...+++.+|||||++..+...+..|...+.....+..+|+||+... +.. ...
T Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 98 IEIDAASR-TKVEDTRDLLDNVQYA-PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp EEEETTCG-GGHHHHHHHHHSCCCS-CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEecCccc-ccHHHHHHHHHHhhhc-hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 33333222 2223344455544321 2456789999999987665667778877776666788888887643 211 122
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++++|+.
T Consensus 176 r~~~i~l~~l~~ 187 (250)
T 1njg_A 176 RCLQFHLKALDV 187 (250)
T ss_dssp TSEEEECCCCCH
T ss_pred HhhhccCCCCCH
Confidence 346788888764
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.7e-10 Score=98.31 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=93.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++...-.......++++.++...... +..++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHH
Confidence 469999999999999986532 23388999999999999999988431111112355566655545433 33344
Q ss_pred HHccC-CCCC-CCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhh-cCCCceEeCCCCCC
Q 045522 175 EALDG-HESR-LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSM-MGSTDIISVKELTK 245 (246)
Q Consensus 175 ~~~~~-~~~~-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~-~~~~~~~~l~~L~~ 245 (246)
..+.. .... .+++.++|||+++......+..|...+.....++.+|+||.... +... ......+++.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~ 168 (323)
T 1sxj_B 94 KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 168 (323)
T ss_dssp HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCH
Confidence 44321 1123 45689999999988654556667777766666788888886642 2111 12345778877763
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=7.6e-10 Score=94.36 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=88.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|+++.++.+..++..+. .+.+.++|++|+|||++|+.+++.......-...+.++.++...... +...+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKV 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHH
Confidence 469999999999998886532 33489999999999999999988421111112334455443322221 22222
Q ss_pred HHccCCCCCC-CCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhhc-CCCceEeCCCCCC
Q 045522 175 EALDGHESRL-GKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 175 ~~~~~~~~~~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~~-~~~~~~~l~~L~~ 245 (246)
..+....+.. +++.++|+|+++......+..|...+.....++++|+||.... +...+ .....+.+.+++.
T Consensus 98 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~ 171 (327)
T 1iqp_A 98 KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRD 171 (327)
T ss_dssp HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCH
T ss_pred HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCH
Confidence 2222222232 6788999999988765566778777776666788888886642 11111 1124677777653
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.86 E-value=1.7e-09 Score=91.88 Aligned_cols=141 Identities=12% Similarity=0.050 Sum_probs=85.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH---HHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE---FRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~---~~~~~ 171 (246)
.+++|++..++.+.+++.... .+.+.++|++|+|||++|+.+++...-...-...+.++.+..... ...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHH
Confidence 459999999999888875432 234899999999999999998874211111112344555443222 22222
Q ss_pred HHHHHccCCCCC-CCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhh-cCCCceEeCCCCCC
Q 045522 172 AMVEALDGHESR-LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSM-MGSTDIISVKELTK 245 (246)
Q Consensus 172 ~i~~~~~~~~~~-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~-~~~~~~~~l~~L~~ 245 (246)
.... .... .+++.++|+|+++.........|...+.....++.+|+||.... +... ......+++.+++.
T Consensus 91 ~~~~----~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~ 163 (319)
T 2chq_A 91 EFAR----TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK 163 (319)
T ss_dssp HHHH----SCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCH
T ss_pred HHHh----cCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCH
Confidence 2221 1112 35688999999987654455667667766556778888876543 2111 12245677777653
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.85 E-value=2.4e-09 Score=83.62 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=72.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc---c--ccCeEEEEEecCCC-----
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK---R--KFDKILWVCVSDTF----- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~--~F~~~~wv~~~~~~----- 164 (246)
..++||+++++++.+.+.... ...+.|+|++|+|||+||+.+++..... . .....+++++....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 95 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCS
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCc
Confidence 469999999999999986532 3567899999999999999988743110 0 12345555543211
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC--------ccCHHHHHHhhcCCCCCcEEEEecCChh
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD--------YIKWKPFYHCLKNGLHESKILVTTRKGS 227 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IliTtR~~~ 227 (246)
.....+..++..+. ..++..+|+|||++... ......+...+... +..+|.||....
T Consensus 96 ~~~~~~~~~~~~~~~~----~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~~~~~ 162 (195)
T 1jbk_A 96 RGEFEERLKGVLNDLA----KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATTLDE 162 (195)
T ss_dssp HHHHHHHHHHHHHHHH----HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--SCCEEEEECHHH
T ss_pred cccHHHHHHHHHHHHh----hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--CeEEEEeCCHHH
Confidence 11223333433332 13467899999997642 12234444444332 345666666544
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.82 E-value=1.2e-08 Score=88.53 Aligned_cols=144 Identities=14% Similarity=0.198 Sum_probs=88.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccc-------------------cCeE
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRK-------------------FDKI 155 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 155 (246)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+.+....... +...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 459999999999999886532 2347889999999999999998764321111 1112
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHh-hcC
Q 045522 156 LWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTS-MMG 233 (246)
Q Consensus 156 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~-~~~ 233 (246)
+.+........ ..+..++..+.. .+..+++.++|+|+++..+......|...+.....+..+|++|.... +.. ...
T Consensus 91 ~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 91 IEIDAASRTKV-EDTRDLLDNVQY-APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp EEEETTCSCCS-SCHHHHHHHTTS-CCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT
T ss_pred EEecccccCCH-HHHHHHHHHHhh-ccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh
Confidence 33333221111 112333444322 12456788999999987765667778887776656677777775432 211 122
Q ss_pred CCceEeCCCCCC
Q 045522 234 STDIISVKELTK 245 (246)
Q Consensus 234 ~~~~~~l~~L~~ 245 (246)
....+++.+++.
T Consensus 169 r~~~i~~~~l~~ 180 (373)
T 1jr3_A 169 RCLQFHLKALDV 180 (373)
T ss_dssp TSEEEECCCCCH
T ss_pred heeEeeCCCCCH
Confidence 346777777763
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.77 E-value=1.6e-08 Score=78.76 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=70.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc-----ccCeEEEEEecCCC-----
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR-----KFDKILWVCVSDTF----- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~~~~~~----- 164 (246)
..++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+++...... .-...+++.+....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKY 95 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCS
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCc
Confidence 46999999999999998653 235678999999999999999887431100 11234445432211
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC---------ccCHHHHHHhhcCCCCCcEEEEecCChh
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD---------YIKWKPFYHCLKNGLHESKILVTTRKGS 227 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~IliTtR~~~ 227 (246)
.....+..++..+.. .++..+|||||++... ......+...+.. ....+|.||....
T Consensus 96 ~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~ 163 (187)
T 2p65_A 96 RGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSE 163 (187)
T ss_dssp HHHHHHHHHHHHHHHHH----TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHH
T ss_pred hhHHHHHHHHHHHHHHh----cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHH
Confidence 111223333333321 2457899999996542 1223334444433 2345777776554
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3e-08 Score=84.92 Aligned_cols=112 Identities=7% Similarity=-0.043 Sum_probs=77.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc---cc--CeEEEEEecCCCCHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR---KF--DKILWVCVSDTFDEFRV 169 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F--~~~~wv~~~~~~~~~~~ 169 (246)
..+.|||++++++...|...- .......+.|+|++|+|||++++.+++...... .. -..+++++....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 458999999999988776532 124557889999999999999999998543211 11 14667787777788888
Q ss_pred HHHHHHHccCCCC---------------C---CCCeEEEEEeCCCCCCccCHHHHHHhh
Q 045522 170 AKAMVEALDGHES---------------R---LGKRFLLVLDDVWDGDYIKWKPFYHCL 210 (246)
Q Consensus 170 ~~~i~~~~~~~~~---------------~---~~kr~LlVlDdv~~~~~~~~~~l~~~l 210 (246)
+..|++++.+... . .++.++++||+++... .-+.|...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~ 154 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFE 154 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHH
Confidence 8888888854321 1 4568999999998763 233344443
No 21
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.77 E-value=8.1e-09 Score=78.30 Aligned_cols=113 Identities=13% Similarity=0.043 Sum_probs=68.4
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-ccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-KRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
+++|+...++++.+.+..-. .....|.|+|++|+|||++|+.+++.... ...| + ++++...+... ....+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~~~-~~~~~ 72 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNAPQ-LNDFI 72 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTSSC-HHHHH
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcchh-hhcHH
Confidence 57899999999888774322 12235789999999999999999884211 2222 2 55544322111 11112
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~ 225 (246)
... ..-.|+||+++.........|...+.......++|.||..
T Consensus 73 ~~a--------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 73 ALA--------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HHH--------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred HHc--------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 221 2246899999887655556666666544445677777764
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.73 E-value=2.6e-08 Score=85.21 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=87.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|.++.++.+.+++.... ...++.+.|++|+|||++|+.+.+.. . ...+.++.+.. .. ..+...+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-CH-HHHHHHH
Confidence 579999999999999987533 23577888899999999999998843 1 23455555442 33 3333334
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCC-ccCHHHHHHhhcCCCCCcEEEEecCChh-----HHhhcCCCceEeCCCCC
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGD-YIKWKPFYHCLKNGLHESKILVTTRKGS-----VTSMMGSTDIISVKELT 244 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-----va~~~~~~~~~~l~~L~ 244 (246)
..+.......++..+++||+++... ......|...+.....++.+|+||.... +.+. ...+++++++
T Consensus 94 ~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~ 166 (324)
T 3u61_B 94 TNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPT 166 (324)
T ss_dssp HHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCC
T ss_pred HHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCC
Confidence 4333223345688999999998764 4455566666654445567888876543 2222 2456666654
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=1.4e-07 Score=81.12 Aligned_cols=143 Identities=13% Similarity=0.052 Sum_probs=84.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccccc-CeEEEEEecCCCCHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF-DKILWVCVSDTFDEFRVAKAM 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 173 (246)
.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+.+.......+ .....++.+.......+.. .
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-K 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-H
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-H
Confidence 469999999999999986543 2238899999999999999998843211112 2334455554334333222 2
Q ss_pred HHHccCC-C----------CCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhhc-CCCceEeC
Q 045522 174 VEALDGH-E----------SRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSMM-GSTDIISV 240 (246)
Q Consensus 174 ~~~~~~~-~----------~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~~-~~~~~~~l 240 (246)
+..+... . ...++..+|++|+++.........|...+......+++|++|.... +...+ .....+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEe
Confidence 2222110 0 0124567999999977654455667777766555677777765432 21111 11245666
Q ss_pred CCCC
Q 045522 241 KELT 244 (246)
Q Consensus 241 ~~L~ 244 (246)
.+++
T Consensus 190 ~~~~ 193 (353)
T 1sxj_D 190 KALD 193 (353)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.58 E-value=3.2e-08 Score=80.26 Aligned_cols=133 Identities=13% Similarity=0.100 Sum_probs=71.4
Q ss_pred Ccccccc---chHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRV---DEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
.+++|.+ ..++.+..++.. .....+.|+|++|+||||||+.+++.. ......+.|++++..... +.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~---~~ 96 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI---ST 96 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS---CG
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH---HH
Confidence 4577633 445555555433 234678899999999999999998843 333345677776542211 00
Q ss_pred HHHHHccCCCCCCCCeEEEEEeCCCCCCccC--HHHHHHhhcCC-CCC-cEEEEecCCh---------hHHhhcCCCceE
Q 045522 172 AMVEALDGHESRLGKRFLLVLDDVWDGDYIK--WKPFYHCLKNG-LHE-SKILVTTRKG---------SVTSMMGSTDII 238 (246)
Q Consensus 172 ~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~IliTtR~~---------~va~~~~~~~~~ 238 (246)
.++. .-.+..+|||||++...... ...+...+... ..+ .++|+||+.. .+...+.....+
T Consensus 97 ~~~~-------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i 169 (242)
T 3bos_A 97 ALLE-------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTY 169 (242)
T ss_dssp GGGT-------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEE
T ss_pred HHHH-------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceE
Confidence 0000 11356799999997653222 33344443211 112 2477776632 222222223677
Q ss_pred eCCCCCC
Q 045522 239 SVKELTK 245 (246)
Q Consensus 239 ~l~~L~~ 245 (246)
++++++.
T Consensus 170 ~l~~~~~ 176 (242)
T 3bos_A 170 QLQPMMD 176 (242)
T ss_dssp ECCCCCG
T ss_pred EeCCCCH
Confidence 7777764
No 25
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.58 E-value=3.5e-08 Score=74.58 Aligned_cols=110 Identities=8% Similarity=0.049 Sum_probs=64.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
.++|++..++++.+.+..-. .....|.|+|++|+|||++|+.+++... ..+.++++.. .......++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~~~~~~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDMPMELLQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHCHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHhhhhHHH
Confidence 57899998888888764321 1123477999999999999999988432 2233333221 1112233333
Q ss_pred HccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-CCCcEEEEecCC
Q 045522 176 ALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-LHESKILVTTRK 225 (246)
Q Consensus 176 ~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTtR~ 225 (246)
.. +.-.|+||+++.........+...+... ..+.++|.||..
T Consensus 73 ~a--------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 73 KA--------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp HT--------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred hC--------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 32 2347899999887655555566656543 245677777653
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=1.7e-07 Score=80.82 Aligned_cols=146 Identities=11% Similarity=0.040 Sum_probs=82.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc-c-cc-------c-------------
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV-K-RK-------F------------- 152 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~-~~-------F------------- 152 (246)
.+++|.+...+.+.+++.... ....+.|+|++|+||||+|+.+.....- . .. |
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 468999988888888772221 1223899999999999999987763100 0 00 0
Q ss_pred --CeEEEEEecCCC-CHHHHHHHHHHHccCCCCC---------CCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEE
Q 045522 153 --DKILWVCVSDTF-DEFRVAKAMVEALDGHESR---------LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKIL 220 (246)
Q Consensus 153 --~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~---------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il 220 (246)
...+.+..+... ........++..+.....+ .++.-++|||++...+......+...+.....++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 011222222110 0011234444444332221 3477899999998876555666777776555567788
Q ss_pred EecCCh-hHHhhc-CCCceEeCCCCCC
Q 045522 221 VTTRKG-SVTSMM-GSTDIISVKELTK 245 (246)
Q Consensus 221 iTtR~~-~va~~~-~~~~~~~l~~L~~ 245 (246)
++|.+. .+...+ .....+++++++.
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~ 195 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSD 195 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCH
Confidence 777653 222222 2246677777663
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.57 E-value=7.8e-08 Score=86.21 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=75.7
Q ss_pred CccccccchH---HHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHH
Q 045522 95 EEICGRVDEK---NELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 95 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 171 (246)
.+++|.+..+ ..+...+... ....+.|+|++|+||||||+.+.+ .....|. .++.. ......+ .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f~---~l~a~-~~~~~~i-r 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIAR--YANADVE---RISAV-TSGVKEI-R 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHH--HTTCEEE---EEETT-TCCHHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHH--HhCCCeE---EEEec-cCCHHHH-H
Confidence 4688888777 5666666443 346899999999999999999998 3333331 22222 1223222 2
Q ss_pred HHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh--H-HhhcCCCceEeCCCCCC
Q 045522 172 AMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS--V-TSMMGSTDIISVKELTK 245 (246)
Q Consensus 172 ~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~--v-a~~~~~~~~~~l~~L~~ 245 (246)
.++...... ...+++.+|+||+++.......+.|...+..+ .-.-|..||.+.. + .........+.+++++.
T Consensus 93 ~~~~~a~~~-~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~ 167 (447)
T 3pvs_A 93 EAIERARQN-RNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSALLSRARVYLLKSLST 167 (447)
T ss_dssp HHHHHHHHH-HHTTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCH
T ss_pred HHHHHHHHh-hhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCH
Confidence 222221110 02356889999999887555666677777653 2233444555542 1 11223345777777763
No 28
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.6e-07 Score=80.98 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=84.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccccccc-CeEEEEEecCCCCHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF-DKILWVCVSDTFDEFRVAKAM 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 173 (246)
.+++|.+..++.|...+..+. .+.+.++|++|+||||+|+.+.....- ..+ ..+..++.+.......+. ..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir-~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVR-NQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHH-TH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHH-HH
Confidence 457898888888888875532 233889999999999999998874211 111 123344554444444333 23
Q ss_pred HHHccC-CCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhhc-CCCceEeCCCCC
Q 045522 174 VEALDG-HESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSMM-GSTDIISVKELT 244 (246)
Q Consensus 174 ~~~~~~-~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~~-~~~~~~~l~~L~ 244 (246)
+..+.. .....++..++|+|+++.......+.|...+......+.+|++|.... +...+ .....+.+.+++
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~ 170 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLP 170 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCC
Confidence 333221 112334578999999977654556667777766556677777765432 21111 223456666665
No 29
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=3.3e-07 Score=78.05 Aligned_cols=138 Identities=14% Similarity=0.057 Sum_probs=89.1
Q ss_pred cccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccc-cccccCeEEEEEecC-CCCHHHHHHHHHHH
Q 045522 99 GRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDE-VKRKFDKILWVCVSD-TFDEFRVAKAMVEA 176 (246)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~ 176 (246)
|-++.++.|...+..+ . ...+.++|++|+||||+|+.+.+... .........+++.+. ......+ +++++.
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 4456677777776442 2 57899999999999999999876311 111223345566543 4555443 446665
Q ss_pred ccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCCh-hHHhhcCCCceEeCCCCCC
Q 045522 177 LDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKG-SVTSMMGSTDIISVKELTK 245 (246)
Q Consensus 177 ~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~-~va~~~~~~~~~~l~~L~~ 245 (246)
+.. .+..+++.++|+|+++.......+.|...+....+.+.+|++|.+. .+...+... .+++.++++
T Consensus 74 ~~~-~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 74 LNY-SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp HTS-CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred Hhh-ccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 543 2345678899999998876667788888888777778877776543 343333334 778877765
No 30
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.50 E-value=6.3e-08 Score=82.53 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=65.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|++..++.+...+..... .......+.|+|++|+|||+||+.+++.. .. ...+++.+.......+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHHHHH---
Confidence 4699999999988887753110 01223578899999999999999998832 22 234555554444433333
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhc
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLK 211 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 211 (246)
.+.. ...+..+|+||+++.........|...+.
T Consensus 83 -~l~~---~~~~~~~l~lDEi~~l~~~~~~~L~~~l~ 115 (324)
T 1hqc_A 83 -ILAN---SLEEGDILFIDEIHRLSRQAEEHLYPAME 115 (324)
T ss_dssp -HHTT---TCCTTCEEEETTTTSCCHHHHHHHHHHHH
T ss_pred -HHHH---hccCCCEEEEECCcccccchHHHHHHHHH
Confidence 2221 01345699999998865444555555554
No 31
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.50 E-value=7.5e-08 Score=75.28 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=54.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCCeEEEEEeCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-----RLGKRFLLVLDDVW 196 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~kr~LlVlDdv~ 196 (246)
...+.|+|++|+|||||++.+++.......+ .++++++ .++...+......... .-.+.-+||||+++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFDT------KDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEEH------HHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEEH------HHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCC
Confidence 4689999999999999999998843211121 2344443 3333333322221110 11245699999998
Q ss_pred CCCccCHH--HHHHhhcCC-CCCcEEEEecCCh
Q 045522 197 DGDYIKWK--PFYHCLKNG-LHESKILVTTRKG 226 (246)
Q Consensus 197 ~~~~~~~~--~l~~~l~~~-~~gs~IliTtR~~ 226 (246)
......|. .+...+... ..|..+|+||...
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 43213333 343333322 2456788888653
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=3.6e-07 Score=83.36 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=82.1
Q ss_pred CccccccchHHHHHHHhhCCCC-----------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC
Q 045522 95 EEICGRVDEKNELLSKLLCESS-----------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 163 (246)
.+++|++..++++.++|..... ......+.+.|+|++|+|||+||+.+++.. . ...+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~-~~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----G-YDILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----T-CEEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----C-CCEEEEeCCCc
Confidence 4699999999999999865110 001234689999999999999999999843 1 13445566555
Q ss_pred CCHHHHHHHHHHHccCCCC-------------CCCCeEEEEEeCCCCCCcc---CHHHHHHhhcCCCCCcEEEEecCCh-
Q 045522 164 FDEFRVAKAMVEALDGHES-------------RLGKRFLLVLDDVWDGDYI---KWKPFYHCLKNGLHESKILVTTRKG- 226 (246)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~-------------~~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~IliTtR~~- 226 (246)
.... ++...+........ ..+++.+|+||+++..... .+..|...+... +..||+++.+.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 4443 23332222211110 2367889999999764322 235555555443 23344444332
Q ss_pred --hHHhhcCCCceEeCCCCC
Q 045522 227 --SVTSMMGSTDIISVKELT 244 (246)
Q Consensus 227 --~va~~~~~~~~~~l~~L~ 244 (246)
.+.........+.+++++
T Consensus 191 ~~~l~~l~~r~~~i~f~~~~ 210 (516)
T 1sxj_A 191 LPKMRPFDRVCLDIQFRRPD 210 (516)
T ss_dssp SSTTGGGTTTSEEEECCCCC
T ss_pred CccchhhHhceEEEEeCCCC
Confidence 222222224566776665
No 33
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.48 E-value=1.3e-07 Score=79.19 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=57.5
Q ss_pred CCccccccchHHHHHHHhhCCCCC-------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC--
Q 045522 94 EEEICGRVDEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-- 164 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-- 164 (246)
-.+++|.++.+++|.+.+...... +-.....+.|+|++|+|||+||+.+++.. ... .+.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~---~~~v~~~~~~~~ 90 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NAT---FIRVVGSELVKK 90 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCE---EEEEEGGGGCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehHHHHHh
Confidence 357999999999998877431000 00233568899999999999999998843 222 2333332211
Q ss_pred ---CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 ---DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 ---~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.....+..++.... .....+|+||+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~-----~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAK-----EKAPSIIFIDEIDA 121 (285)
T ss_dssp STTHHHHHHHHHHHHHH-----HTCSEEEEEETTHH
T ss_pred ccchHHHHHHHHHHHHH-----HcCCeEEEEECHHH
Confidence 12333444444332 23567999999954
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.47 E-value=8.8e-08 Score=76.19 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=58.0
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES 182 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~ 182 (246)
.++.+..++..... ......+.|+|++|+|||+||+.+++. .......++|++++ .+...+...+.....
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 106 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQTM 106 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---CCC
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccchH
Confidence 34445555543321 112267889999999999999999984 33334456666653 233333222211100
Q ss_pred ------CCCCeEEEEEeCCCCCCccCHHH--HHH-hhcCC-CCCcEEEEecCC
Q 045522 183 ------RLGKRFLLVLDDVWDGDYIKWKP--FYH-CLKNG-LHESKILVTTRK 225 (246)
Q Consensus 183 ------~~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IliTtR~ 225 (246)
+. +.-+|||||++......|.. +.. .+... ..+..+|+||..
T Consensus 107 ~~~~~~~~-~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 107 NEKLDYIK-KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHHHH-HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhc-CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11 22399999997643233321 222 22211 234568888774
No 35
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.45 E-value=3.2e-07 Score=82.07 Aligned_cols=115 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccccccccc--CeEEEEEecCCCCHHHHHHHHHHHccCCCC------CCCCeEEEEEe
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKF--DKILWVCVSDTFDEFRVAKAMVEALDGHES------RLGKRFLLVLD 193 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~kr~LlVlD 193 (246)
...+.|+|++|+||||||+.+++. ....+ ..+++++... +...+...+..... ...+..+|+||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEK------FLNDLVDSMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHH------HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHH------HHHHHHHHHHcccHHHHHHHhcCCCCEEEEe
Confidence 568999999999999999999983 33332 2455665432 33333333322211 12256799999
Q ss_pred CCCCCCc--cCHHHHHHhhcC-CCCCcEEEEecCCh---------hHHhhcCCCceEeCCCCC
Q 045522 194 DVWDGDY--IKWKPFYHCLKN-GLHESKILVTTRKG---------SVTSMMGSTDIISVKELT 244 (246)
Q Consensus 194 dv~~~~~--~~~~~l~~~l~~-~~~gs~IliTtR~~---------~va~~~~~~~~~~l~~L~ 244 (246)
|++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++
T Consensus 202 Ei~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 202 DVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp CGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 9976532 122334444421 13467788888752 333334334556666654
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.44 E-value=9.4e-08 Score=82.10 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=65.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.+++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+. ....| +.++.+.......+ ...+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~~-~~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKSGDL-AAIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSHHHH-HHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccchhHH-HHHH
Confidence 4699999999998888864310 0133456899999999999999999873 32222 33444333233222 2222
Q ss_pred HHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcC
Q 045522 175 EALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKN 212 (246)
Q Consensus 175 ~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 212 (246)
.. ..+..+|+||+++.........|...+..
T Consensus 102 ~~-------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~ 132 (338)
T 3pfi_A 102 TN-------LSEGDILFIDEIHRLSPAIEEVLYPAMED 132 (338)
T ss_dssp HT-------CCTTCEEEEETGGGCCHHHHHHHHHHHHT
T ss_pred Hh-------ccCCCEEEEechhhcCHHHHHHHHHHHHh
Confidence 22 23567999999987654445556665543
No 37
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.44 E-value=4.1e-07 Score=75.47 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|.+..+..+.+.+..-. .....+.|+|++|+|||+||+.+++... ..-...+.++++... ...+...+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~-~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC-HHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC-hhHHHHHhc
Confidence 358899999888877664422 1124678999999999999999988432 111234556655432 222222221
Q ss_pred HHccC----CC----C-C-CCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 175 EALDG----HE----S-R-LGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 175 ~~~~~----~~----~-~-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
....+ .. . + ....-+|+||+++.........|...+..+ ....+||.||..
T Consensus 79 g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp CCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 11000 00 0 0 012358999999877544455566555432 124578888765
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.44 E-value=4.5e-07 Score=76.72 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=71.5
Q ss_pred ccccccchHHHHHHHhhCCC---------CCCCCCeEEEEEEeeCCchHHHHHHHHhccccccccc--CeEEEEEecCCC
Q 045522 96 EICGRVDEKNELLSKLLCES---------SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF--DKILWVCVSDTF 164 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~ 164 (246)
+++|.+..++.+.+.+.... -........+.|+|++|+|||+||+.+++........ ...+.++.+.-.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 58999988888876553210 0011344578999999999999999887743221111 133444432211
Q ss_pred -----CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC---------CccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 165 -----DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG---------DYIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 165 -----~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
........++... +..+|+||+++.. .......|...+.....+..||.||...
T Consensus 112 ~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred hhcccccHHHHHHHHHhc--------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 1222233333333 2349999999743 2233456666666655667788887643
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.43 E-value=1.2e-06 Score=72.22 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=53.6
Q ss_pred CccccccchHHHHHHHhh---CCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC---
Q 045522 95 EEICGRVDEKNELLSKLL---CESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD--- 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--- 165 (246)
.+++|.+..++.+.+.+. .... .+....+.+.|+|++|+|||+||+.+++.. ..+ .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVP---FLAMAGAEFVEVIG 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCC---EEEEETTTTSSSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEechHHHHhhcc
Confidence 468999888877765442 1110 001233568899999999999999998833 222 33444433211
Q ss_pred --HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 166 --EFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 166 --~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
....+..++.... .....+|+||+++..
T Consensus 81 ~~~~~~~~~~~~~a~-----~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 81 GLGAARVRSLFKEAR-----ARAPCIVYIDEIDAV 110 (262)
T ss_dssp THHHHHHHHHHHHHH-----HTCSEEEEEECC---
T ss_pred ChhHHHHHHHHHHHH-----hcCCeEEEEeCcchh
Confidence 1223333444332 224689999999764
No 40
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.38 E-value=2.8e-06 Score=73.06 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=85.5
Q ss_pred cchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc--------------------cccCeEEEEEe
Q 045522 101 VDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK--------------------RKFDKILWVCV 160 (246)
Q Consensus 101 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~ 160 (246)
++..+.+...+..+ .-...+.++|++|+|||++|+.+.+...-. .+++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 44556666666443 223578999999999999999887632111 1122 345544
Q ss_pred c---CCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh-HHhhc-CCC
Q 045522 161 S---DTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS-VTSMM-GST 235 (246)
Q Consensus 161 ~---~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~-va~~~-~~~ 235 (246)
. ....... ++.+.+.+... +..+++.++|+|+++.......+.|...+.....++.+|++|.+.+ +...+ ...
T Consensus 82 ~~~~~~~~i~~-ir~l~~~~~~~-~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc 159 (334)
T 1a5t_A 82 EKGKNTLGVDA-VREVTEKLNEH-ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (334)
T ss_dssp CTTCSSBCHHH-HHHHHHHTTSC-CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred cccCCCCCHHH-HHHHHHHHhhc-cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc
Confidence 3 3344444 34556655432 2456788999999988765566778888877666777777776542 32222 335
Q ss_pred ceEeCCCCCC
Q 045522 236 DIISVKELTK 245 (246)
Q Consensus 236 ~~~~l~~L~~ 245 (246)
..+++.+++.
T Consensus 160 ~~~~~~~~~~ 169 (334)
T 1a5t_A 160 RLHYLAPPPE 169 (334)
T ss_dssp EEEECCCCCH
T ss_pred eeeeCCCCCH
Confidence 6778877764
No 41
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.37 E-value=2.1e-07 Score=70.86 Aligned_cols=102 Identities=14% Similarity=0.041 Sum_probs=58.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIK 202 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~ 202 (246)
..+.|+|+.|+|||||++.++..... .-..+++++..+-... . +..+.-+|||||+...+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~~---------~------~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPLT---------D------AAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCCC---------G------GGGGCSEEEEESTTCCCSHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhHH---------H------HHhCCCEEEEeCccccChHH
Confidence 58899999999999999999884432 1113566665443221 0 12245689999997754322
Q ss_pred HHHHHHhhcCC-CCCc-EEEEecCC--------hhHHhhcCCCceEeCC
Q 045522 203 WKPFYHCLKNG-LHES-KILVTTRK--------GSVTSMMGSTDIISVK 241 (246)
Q Consensus 203 ~~~l~~~l~~~-~~gs-~IliTtR~--------~~va~~~~~~~~~~l~ 241 (246)
-..+...+... ..|. .+|+||+. +.+.+.+....+++++
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l~ 148 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVK 148 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCCC
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhcCeeEEec
Confidence 33344443211 1233 48888874 2444444444444443
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.37 E-value=7.5e-07 Score=74.20 Aligned_cols=137 Identities=19% Similarity=0.208 Sum_probs=74.1
Q ss_pred CccccccchHHHHHHH-------hhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSK-------LLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~-------L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
..++|....++++... +.... ......+.|+|++|+|||+||+.+++. ....| +.++.+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~~g~ 104 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKMIGF 104 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGCTTC
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHhcCC
Confidence 3577887776666652 22111 245678999999999999999999884 22222 223332211
Q ss_pred CH---HHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC----------CccCHHHHHHhhcC---CCCCcEEEEecCChhH
Q 045522 165 DE---FRVAKAMVEALDGHESRLGKRFLLVLDDVWDG----------DYIKWKPFYHCLKN---GLHESKILVTTRKGSV 228 (246)
Q Consensus 165 ~~---~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~IliTtR~~~v 228 (246)
.. ...+..++..+ ...+..+|+||+++.. .......|...+.. ......||.||.....
T Consensus 105 ~~~~~~~~~~~~~~~~-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 105 SETAKCQAMKKIFDDA-----YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV 179 (272)
T ss_dssp CHHHHHHHHHHHHHHH-----HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH
T ss_pred chHHHHHHHHHHHHHH-----HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhh
Confidence 11 12233334333 2246889999998542 10112233333332 2233457777877654
Q ss_pred Hhhc---CC-CceEeCCCCC
Q 045522 229 TSMM---GS-TDIISVKELT 244 (246)
Q Consensus 229 a~~~---~~-~~~~~l~~L~ 244 (246)
...+ +. ...+++++|+
T Consensus 180 l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 180 LQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHHTTCTTTSSEEEECCCEE
T ss_pred cchhhhhcccceEEcCCCcc
Confidence 4331 22 4567777664
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.37 E-value=9.7e-07 Score=76.48 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=36.0
Q ss_pred CccccccchHHH---HHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 95 EEICGRVDEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 95 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.+++|++..++. +...+.... .....+.|+|++|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999988776 444444332 223688999999999999999998843
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.34 E-value=4e-07 Score=77.82 Aligned_cols=97 Identities=28% Similarity=0.309 Sum_probs=53.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCCeEEEEEeCC
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHES-----RLGKRFLLVLDDV 195 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~kr~LlVlDdv 195 (246)
....+.|+|++|+||||||+.+++... ..-..++++++.. +...+...+..... ...+..+|+||++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi 107 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSADD------FAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV 107 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHHH------HHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHHH------HHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence 346789999999999999999988432 1122445665432 22222222211100 0123569999999
Q ss_pred CCCCc--cCHHHHHHhhcC-CCCCcEEEEecCC
Q 045522 196 WDGDY--IKWKPFYHCLKN-GLHESKILVTTRK 225 (246)
Q Consensus 196 ~~~~~--~~~~~l~~~l~~-~~~gs~IliTtR~ 225 (246)
+.... .....+...+.. ...+..||+||..
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 76532 112334444321 1235567877753
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.32 E-value=6.5e-07 Score=75.47 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=58.4
Q ss_pred CccccccchHHHHHHHhhCC--C-CC-----CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC--
Q 045522 95 EEICGRVDEKNELLSKLLCE--S-SE-----QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~--~-~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-- 164 (246)
..++|.+..++.+...+... . .- .......+.|+|++|+|||+||+.+.+.. .. ..+.++++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l--~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--NA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEcchhcccC
Confidence 46899999999888777531 0 00 00123567899999999999999998833 22 23444543321
Q ss_pred -----CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC
Q 045522 165 -----DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD 199 (246)
Q Consensus 165 -----~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~ 199 (246)
+....+..+.....+.....+...+|+||+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 129 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKIC 129 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGS
T ss_pred CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcC
Confidence 12233444433221110011246799999997653
No 46
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.31 E-value=1.1e-06 Score=75.21 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=58.6
Q ss_pred CccccccchHHHHHHHhhCCC------CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-----
Q 045522 95 EEICGRVDEKNELLSKLLCES------SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT----- 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~----- 163 (246)
.+++|.+..++.|.+.+.... .......+.+.|+|++|+|||+||+.+++. ...+| +.++.+.-
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~ 92 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWM 92 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHHHHHTTTG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchHHHhhccc
Confidence 579999999999888772100 001123467899999999999999999883 33332 33443221
Q ss_pred CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 164 FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
......+..++.... ..+..+|+||+++..
T Consensus 93 g~~~~~~~~~f~~a~-----~~~~~vl~iDEid~l 122 (322)
T 3eie_A 93 GESEKLVKQLFAMAR-----ENKPSIIFIDQVDAL 122 (322)
T ss_dssp GGHHHHHHHHHHHHH-----HTSSEEEEEECGGGG
T ss_pred chHHHHHHHHHHHHH-----hcCCeEEEechhhhh
Confidence 123344444444432 235689999999753
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.29 E-value=1.9e-06 Score=72.80 Aligned_cols=127 Identities=12% Similarity=0.227 Sum_probs=72.4
Q ss_pred ccccccchHHHHHHHhhCCC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 172 (246)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.++.. ....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 57899988888877775421 001123468999999999999999999883 22222234555654332211 1111
Q ss_pred HHHHc----cCCC-C------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 173 MVEAL----DGHE-S------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 173 i~~~~----~~~~-~------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
++... +... . ......+|+||+++.........|...+..+. ..+.+|.||..
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 11000 0000 0 11234699999998776555666766664331 24447777765
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.28 E-value=1.8e-06 Score=83.25 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=58.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccc---cc--cCeEEEEEecCCC-----
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVK---RK--FDKILWVCVSDTF----- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~--F~~~~wv~~~~~~----- 164 (246)
..++||+++++.+...|.... ...+.|+|++|+|||+||+.+++...-. .. -..+++++++.-.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~ 243 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc
Confidence 468999999999999986533 2446899999999999999988743110 00 1234445443321
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
.....+..++..+.. .+++.+|+||+++..
T Consensus 244 ~g~~~~~l~~~~~~~~~----~~~~~iL~IDEi~~l 275 (854)
T 1qvr_A 244 RGEFEERLKAVIQEVVQ----SQGEVILFIDELHTV 275 (854)
T ss_dssp --CHHHHHHHHHHHHHT----TCSSEEEEECCC---
T ss_pred chHHHHHHHHHHHHHHh----cCCCeEEEEecHHHH
Confidence 233344555555432 236789999999764
No 49
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.27 E-value=1.9e-06 Score=73.26 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=69.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH-H
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA-M 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i 173 (246)
+.++|+...++++.+.+..-. .....|.|+|++|+|||++|+.+++... ..-...+.++++... ..++.. +
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~~--~~l~~~~l 73 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAALN--ESLLESEL 73 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSCC--HHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCCC--hHHHHHHh
Confidence 358999999998888775432 1224577999999999999999987321 111122345554322 122222 1
Q ss_pred HHHccCCCC-----C-----CCCeEEEEEeCCCCCCccCHHHHHHhhcCCC-----------CCcEEEEecCC
Q 045522 174 VEALDGHES-----R-----LGKRFLLVLDDVWDGDYIKWKPFYHCLKNGL-----------HESKILVTTRK 225 (246)
Q Consensus 174 ~~~~~~~~~-----~-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTtR~ 225 (246)
.....+... . ....-.|+||+++.........|...+.... ...+||.||..
T Consensus 74 fg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 74 FGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred cCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 111000000 0 0012479999998875444555666665431 24677777765
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.17 E-value=4.6e-06 Score=72.44 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=58.2
Q ss_pred CccccccchHHHHHHHhhCC----CC--CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC---
Q 045522 95 EEICGRVDEKNELLSKLLCE----SS--EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD--- 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--- 165 (246)
.+++|.+..++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++. ... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTSKWV 158 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCCSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhcccc
Confidence 46899999999988876420 00 00123467889999999999999999883 222 234455443221
Q ss_pred --HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 166 --EFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 166 --~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
....+..++.... ..+..+|+||+++.
T Consensus 159 g~~~~~~~~~~~~a~-----~~~~~vl~iDEid~ 187 (357)
T 3d8b_A 159 GEGEKMVRALFAVAR-----CQQPAVIFIDEIDS 187 (357)
T ss_dssp THHHHHHHHHHHHHH-----HTCSEEEEEETHHH
T ss_pred chHHHHHHHHHHHHH-----hcCCeEEEEeCchh
Confidence 2333444444332 23568999999943
No 51
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.15 E-value=1e-05 Score=69.27 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=58.0
Q ss_pred CccccccchHHHHHHHhhCC---CC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC----
Q 045522 95 EEICGRVDEKNELLSKLLCE---SS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF---- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~---- 164 (246)
.+++|.++.++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVSKWL 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCCSSC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHhhhh
Confidence 56899998888887765310 00 0112346788999999999999999998431 12 22334433211
Q ss_pred -CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 165 -DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 165 -~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
.....+..++.... ..+..+|+||+++..
T Consensus 88 g~~~~~~~~lf~~a~-----~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 88 GESEKLVKNLFQLAR-----ENKPSIIFIDEIDSL 117 (322)
T ss_dssp CSCHHHHHHHHHHHH-----HTSSEEEEEETTTGG
T ss_pred hHHHHHHHHHHHHHH-----hcCCcEEEeecHHHh
Confidence 12344444544432 236789999999753
No 52
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.13 E-value=1.3e-05 Score=67.27 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=58.8
Q ss_pred CccccccchHHHHHHHhhCCCC------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC----
Q 045522 95 EEICGRVDEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF---- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~---- 164 (246)
.+++|.+..++.+.+.+..... .-......+.|+|++|+|||+||+.+++.. ... .+.++.+...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLTSKYV 95 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTSSSSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHhhccc
Confidence 4699999999998887632100 001224678999999999999999998833 222 2344443321
Q ss_pred -CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 165 -DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 165 -~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
........++.... ..+..+|+||+++..
T Consensus 96 ~~~~~~~~~~~~~~~-----~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 96 GDGEKLVRALFAVAR-----HMQPSIIFIDEVDSL 125 (297)
T ss_dssp SCHHHHHHHHHHHHH-----HTCSEEEEEETGGGT
T ss_pred chHHHHHHHHHHHHH-----HcCCcEEEeccHHHh
Confidence 23444444444432 235679999999653
No 53
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.08 E-value=4.2e-06 Score=72.64 Aligned_cols=94 Identities=21% Similarity=0.247 Sum_probs=56.4
Q ss_pred CccccccchHHHHHHHhhCC---C---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC-----
Q 045522 95 EEICGRVDEKNELLSKLLCE---S---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT----- 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~----- 163 (246)
.+++|.+..++.|.+.+... . .......+.+.|+|++|+|||+||+.+++.. ...| +.++.+.-
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~~l~~~~~ 125 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSSDLVSKWM 125 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHHHHHSCC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHHHHhhhhc
Confidence 46999999999988876311 0 0011223468899999999999999999843 3222 33332210
Q ss_pred CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 164 FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
-.....+..++.... ..+..+|+||+++..
T Consensus 126 g~~~~~~~~~f~~a~-----~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 126 GESEKLVKQLFAMAR-----ENKPSIIFIDQVDAL 155 (355)
T ss_dssp --CHHHHHHHHHHHH-----HTSSEEEEEECGGGG
T ss_pred chHHHHHHHHHHHHH-----HcCCeEEEEechHhh
Confidence 011233334443331 236789999999754
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.07 E-value=7.8e-06 Score=69.21 Aligned_cols=51 Identities=27% Similarity=0.234 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.+..+++|.+.+...-. -+-.....+.|+|++|+|||+||+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4699999988888876642100 00123457899999999999999999984
No 55
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=5.2e-05 Score=67.47 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=59.0
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
.++.|.++.+++|.+.+.-.-. .+-...+-|.++||+|+|||.||+++++. ...+| +.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~sk~ 255 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVDKY 255 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCCSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcccc
Confidence 3578888888887665532100 01234578899999999999999999993 33333 344443322
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.....+..++.... ....++|++|+++.
T Consensus 256 ~Gese~~ir~~F~~A~-----~~~P~IifiDEiDa 285 (437)
T 4b4t_L 256 IGESARIIREMFAYAK-----EHEPCIIFMDEVDA 285 (437)
T ss_dssp SSHHHHHHHHHHHHHH-----HSCSEEEEEECCCS
T ss_pred chHHHHHHHHHHHHHH-----hcCCceeeeecccc
Confidence 13344555555442 23689999999974
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.04 E-value=6.5e-06 Score=78.39 Aligned_cols=120 Identities=12% Similarity=0.218 Sum_probs=73.9
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHH----
Q 045522 95 EEICGRVDEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEF---- 167 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~---- 167 (246)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+.. ...-...+.++++...+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccccccc
Confidence 4689999999888877754221 112233479999999999999999998832 2222345566654432210
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecC
Q 045522 168 RVAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTR 224 (246)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR 224 (246)
..+...+.. ....+|+||++..........|...+..+ ...+.||+||.
T Consensus 569 ~~l~~~~~~--------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 569 GQLTEKVRR--------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp --CHHHHHH--------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred chhhHHHHh--------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 011111111 13348999999887655666677666542 23568888887
No 57
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=1.9e-05 Score=70.53 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCC----C--CCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCE----S--SEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.+..++.|.+.+... . .......+.+.|+|++|+|||+||+.+++.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999888766310 0 001123467889999999999999999984
No 58
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.96 E-value=3.3e-06 Score=71.91 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=55.0
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC-
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE- 181 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~- 181 (246)
.++.+.+++..... .....+.|+|++|+|||+||..+++.... .....+.+++++ .++..+...+....
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~------~l~~~l~~~~~~~~~ 205 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP------SFAIDVKNAISNGSV 205 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH------HHHHHHHCCCC----
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH------HHHHHHHHHhccchH
Confidence 34445555543221 12467889999999999999999984320 222345555543 33333322221110
Q ss_pred -C---CCCCeEEEEEeCCCCCCccCHH--HHHH-hhcCC-CCCcEEEEecCC
Q 045522 182 -S---RLGKRFLLVLDDVWDGDYIKWK--PFYH-CLKNG-LHESKILVTTRK 225 (246)
Q Consensus 182 -~---~~~kr~LlVlDdv~~~~~~~~~--~l~~-~l~~~-~~gs~IliTtR~ 225 (246)
. .-.+.-+|||||+.......|. .+.. .+... ..+..+|+||..
T Consensus 206 ~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 206 KEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 0 0012348999999653222231 1222 22211 123357777764
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.95 E-value=4.5e-05 Score=72.50 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=61.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccccc---cc-ccCeEEE-EEec-------C
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEV---KR-KFDKILW-VCVS-------D 162 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~w-v~~~-------~ 162 (246)
..++||+.+++.+.+.|.... ..-+.|+|++|+|||++|+.+.+.... .. .....+| ++++ .
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 468999999999999986532 345689999999999999998873211 11 1223333 2221 1
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCC
Q 045522 163 TFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDG 198 (246)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~ 198 (246)
.-.....+..++..+.. .+..+|+||+++..
T Consensus 260 ~g~~e~~l~~~~~~~~~-----~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 260 RGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTI 290 (758)
T ss_dssp SSCHHHHHHHHHHHHSS-----SSCEEEEETTTTTT
T ss_pred cchHHHHHHHHHHHHHh-----cCCeEEEEechHHH
Confidence 12345566666666533 25689999999754
No 60
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.94 E-value=7.3e-06 Score=71.88 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=56.5
Q ss_pred CccccccchHHHHHHHhhCCCC------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC---
Q 045522 95 EEICGRVDEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD--- 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--- 165 (246)
.+++|.+..++.|.+.+..... ......+.+.|+|++|+|||+||+.+++. ... ..+.++++.-.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcccc
Confidence 4799999999998887732100 00122467899999999999999999873 222 233444433211
Q ss_pred --HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 166 --EFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 166 --~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
....+..++..+. .....+|+||+++.
T Consensus 190 g~~~~~~~~~~~~a~-----~~~~~il~iDEid~ 218 (389)
T 3vfd_A 190 GEGEKLVRALFAVAR-----ELQPSIIFIDQVDS 218 (389)
T ss_dssp --CHHHHHHHHHHHH-----HSSSEEEEEETGGG
T ss_pred chHHHHHHHHHHHHH-----hcCCeEEEEECchh
Confidence 1233344444332 12457999999964
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.91 E-value=2.6e-05 Score=65.81 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=41.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC----C-CHHHHHHHHHHHccCCCCCCCCeEEEEEeC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT----F-DEFRVAKAMVEALDGHESRLGKRFLLVLDD 194 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~----~-~~~~~~~~i~~~~~~~~~~~~kr~LlVlDd 194 (246)
.....+.++|++|+|||+||+.+++.. ..+| +.++++.- . .....+..++....... ......+|+||+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l--~~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-~~~~~~vl~iDE 107 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM--GINP---IMMSAGELESGNAGEPAKLIRQRYREAAEII-RKGNMCCLFIND 107 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH--TCCC---EEEEHHHHHCC---HHHHHHHHHHHHHHHHH-TTSSCCCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEeHHHhhhccCchhHHHHHHHHHHHHHHH-hcCCCeEEEEec
Confidence 445678899999999999999999843 2232 33443221 1 12223333333321000 134678999999
Q ss_pred CCC
Q 045522 195 VWD 197 (246)
Q Consensus 195 v~~ 197 (246)
++.
T Consensus 108 iD~ 110 (293)
T 3t15_A 108 LDA 110 (293)
T ss_dssp CC-
T ss_pred hhh
Confidence 964
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.89 E-value=1e-05 Score=69.18 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=61.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|+++.++.+...+... ..+.++|++|+|||+||+.+.+. ....| ..+.+........+.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCcee
Confidence 35889999999888887653 35889999999999999999883 32222 2334433333333321110
Q ss_pred HHcc-CCCCCCCC---eEEEEEeCCCCCCccCHHHHHHhhc
Q 045522 175 EALD-GHESRLGK---RFLLVLDDVWDGDYIKWKPFYHCLK 211 (246)
Q Consensus 175 ~~~~-~~~~~~~k---r~LlVlDdv~~~~~~~~~~l~~~l~ 211 (246)
-... +......+ ..+++||+++.........|...+.
T Consensus 94 ~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~ 134 (331)
T 2r44_A 94 YNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQ 134 (331)
T ss_dssp EETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHH
T ss_pred ecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHh
Confidence 0000 00000001 2589999998775455555555554
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.88 E-value=6.8e-06 Score=74.36 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=56.2
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC----C
Q 045522 95 EEICGRVDEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD----T 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~----~ 163 (246)
.+++|.+..+++|.+.+...... +.....-+.|+|++|+|||+||+.+++. ...+ .+.++++. .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPEIMSKL 278 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchHhhhhh
Confidence 46899999999988876431000 0123356889999999999999999883 3333 34444322 1
Q ss_pred CC-HHHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 164 FD-EFRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 164 ~~-~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
+. ....+..++... ..++..+|+||+++
T Consensus 279 ~g~~~~~~~~~f~~A-----~~~~p~iLfLDEId 307 (489)
T 3hu3_A 279 AGESESNLRKAFEEA-----EKNAPAIIFIDELD 307 (489)
T ss_dssp TTHHHHHHHHHHHHH-----HHTCSEEEEEESHH
T ss_pred cchhHHHHHHHHHHH-----HhcCCcEEEecchh
Confidence 11 222333344433 22456899999994
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=2e-05 Score=70.01 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=58.8
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
.++.|.++.+++|.+.+...-. -+-...+-+.++||+|+|||+||+++++. ...+| +.++.+.-.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~~~ 246 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVHKY 246 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhccc
Confidence 4678899888888775532100 01234567899999999999999999983 33333 344543322
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
.....++.++..+. ....+++++|+++
T Consensus 247 ~Ge~e~~ir~lF~~A~-----~~aP~IifiDEiD 275 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLAR-----ENAPSIIFIDEVD 275 (428)
T ss_dssp CSHHHHHHHHHHHHHH-----HTCSEEEEEECTH
T ss_pred cchhHHHHHHHHHHHH-----HcCCCeeechhhh
Confidence 23445555555543 2367899999995
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.86 E-value=2.6e-05 Score=64.16 Aligned_cols=92 Identities=21% Similarity=0.205 Sum_probs=52.0
Q ss_pred CccccccchHHHHHHHh---hCCCCC---CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC----
Q 045522 95 EEICGRVDEKNELLSKL---LCESSE---QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF---- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~---- 164 (246)
.+++|.+..++++.+.+ .....- +.....-+.|+|++|+||||||+.+++.. ...| +.++.+.-.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~~~~ 86 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVEMFV 86 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTTSCC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHHHhh
Confidence 46899888877765543 211000 00112358899999999999999998833 2222 344432211
Q ss_pred -CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 165 -DEFRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 165 -~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
.....+..++.... .....++++|+++
T Consensus 87 ~~~~~~~~~~~~~a~-----~~~~~il~iDeid 114 (257)
T 1lv7_A 87 GVGASRVRDMFEQAK-----KAAPCIIFIDEID 114 (257)
T ss_dssp CCCHHHHHHHHHHHH-----TTCSEEEEETTHH
T ss_pred hhhHHHHHHHHHHHH-----HcCCeeehhhhhh
Confidence 11222333444332 2346799999984
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=5.1e-05 Score=67.09 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=58.9
Q ss_pred CccccccchHHHHHHHhhC---CCC----CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSKLLC---ESS----EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
.++.|.++.+++|.+.+.. ... .+-...+-|.++|++|+|||.||+++++. ...+| +.++.++-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~sk~ 256 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQKY 256 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCCSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhhcc
Confidence 3577888888887765422 100 01234577999999999999999999993 33333 333432211
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.....++.++..... ...++|++|+++.
T Consensus 257 vGesek~ir~lF~~Ar~-----~aP~IIfiDEiDa 286 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGE-----NAPSIVFIDEIDA 286 (437)
T ss_dssp SSHHHHHHHHHHHHHHH-----TCSEEEEEEEESS
T ss_pred CchHHHHHHHHHHHHHh-----cCCcEEEEehhhh
Confidence 234555666555432 3678999999864
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.78 E-value=9e-05 Score=66.71 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=53.6
Q ss_pred CccccccchHHHHHHHhhCCCCC------CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC---
Q 045522 95 EEICGRVDEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD--- 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--- 165 (246)
.+++|.++.++++.+.+..-... +..-.+-+.|+|++|+|||+||+.+++. ....| +.++.+.-..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~~~ 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVELFV 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTCCT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHHHh
Confidence 46899988877766544210000 0011234889999999999999999983 32232 3344433211
Q ss_pred --HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 166 --EFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 166 --~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
...-...++.... .....+|+||+++.
T Consensus 91 g~~~~~~r~lf~~A~-----~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 91 GVGAARVRDLFAQAK-----AHAPCIVFIDEIDA 119 (476)
T ss_dssp THHHHHHHHHHHHHH-----HTCSEEEEEETGGG
T ss_pred cccHHHHHHHHHHHH-----hcCCCEEEEechhh
Confidence 1122333333332 23578999999965
No 68
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=2.2e-05 Score=69.07 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=59.6
Q ss_pred CccccccchHHHHHHHhhCCC-------CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSKLLCES-------SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
.++.|.++.+++|.+.+.-.- .-+-...+-+.++||+|+|||.||+++++ ....+| +.++.+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~sk~ 222 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQKY 222 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhccc
Confidence 357788888888876553210 00123346788999999999999999999 433343 344443322
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.....++.++.... ....++|++|+++.
T Consensus 223 vGese~~vr~lF~~Ar-----~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAR-----EHAPSIIFMDEIDS 252 (405)
T ss_dssp TTHHHHHHHHHHHHHH-----HTCSEEEEEESSSC
T ss_pred cchHHHHHHHHHHHHH-----HhCCceEeeecchh
Confidence 23455555655543 23679999999975
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=0.00012 Score=69.49 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=71.1
Q ss_pred CccccccchHHHHHHHhhCCC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH-----
Q 045522 95 EEICGRVDEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE----- 166 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~----- 166 (246)
..++|.+..++.+...+.... .........+.++|++|+|||++|+.+.+.. . ...+.++++.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhhHhh
Confidence 458899988888877664321 0112334579999999999999999998833 2 23344554432210
Q ss_pred --------HH--HHHHHHHHccCCCCCCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 167 --------FR--VAKAMVEALDGHESRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 167 --------~~--~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
.. -...+...+ ......+|+||++..........|...+..+ ...+.||.||..
T Consensus 533 l~g~~~g~~g~~~~~~l~~~~-----~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 533 LIGAPPGYVGFDQGGLLTDAV-----IKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp SCCCCSCSHHHHHTTHHHHHH-----HHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred hcCCCCCCcCccccchHHHHH-----HhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 00 000011111 1123579999999887655666677666533 134557777754
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.75 E-value=4e-05 Score=73.92 Aligned_cols=128 Identities=13% Similarity=0.213 Sum_probs=70.9
Q ss_pred ccccccchHHHHHHHhhCCC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH---HHH
Q 045522 96 EICGRVDEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE---FRV 169 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~---~~~ 169 (246)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.+.+.. ...-...+.++++..... ..+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~~~s~l 636 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKHAVSRL 636 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSGGGGGC
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchhHHHHH
Confidence 47899998888877764321 0011234688999999999999999988732 111123344554432211 111
Q ss_pred HHHHHHHccCCC--C-----CCCCeEEEEEeCCCCCCccCHHHHHHhhcCC-----------CCCcEEEEecCC
Q 045522 170 AKAMVEALDGHE--S-----RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNG-----------LHESKILVTTRK 225 (246)
Q Consensus 170 ~~~i~~~~~~~~--~-----~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTtR~ 225 (246)
+..-....+... . ......+|+||++..........|...+..+ ..++.||+||..
T Consensus 637 ~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 637 IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp --------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred cCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 000000000000 0 0122458999999887656666777777644 134558888774
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=3.4e-05 Score=68.86 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=59.2
Q ss_pred CccccccchHHHHHHHhhC---C-C---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSKLLC---E-S---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~---~-~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
.++.|.++.+++|.+.+.- . . .-+-...+-|.++|++|+|||.||+++++ ....+| +.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~sk~ 283 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQKY 283 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCCCS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhccc
Confidence 3688888888888765421 0 0 00123457788999999999999999998 333333 344433221
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.....++.++.... ....++|++|+++.
T Consensus 284 vGesek~ir~lF~~Ar-----~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 284 VGEGARMVRELFEMAR-----TKKACIIFFDEIDA 313 (467)
T ss_dssp SSHHHHHHHHHHHHHH-----HTCSEEEEEECCTT
T ss_pred CCHHHHHHHHHHHHHH-----hcCCceEeeccccc
Confidence 23445555555543 23679999999975
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.70 E-value=3.4e-05 Score=73.43 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++||+++++.+...|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999996533 234789999999999999998874
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.69 E-value=2e-05 Score=72.18 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=34.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.++..+.+.+.+.-..-........+.|+|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457888877777655432111001123468999999999999999999873
No 74
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.68 E-value=4.3e-05 Score=65.45 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=33.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.+..++.+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458998886666554444322 223889999999999999999874
No 75
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=2.7e-05 Score=69.20 Aligned_cols=92 Identities=13% Similarity=0.211 Sum_probs=57.9
Q ss_pred CccccccchHHHHHHHhhC----CC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC---
Q 045522 95 EEICGRVDEKNELLSKLLC----ES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF--- 164 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--- 164 (246)
.++.|.++.+++|.+.+.. .. ..+-...+-|.++||+|+|||.||+++++. ...+| +.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~~~ 255 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQMY 255 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCSSC
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhhcc
Confidence 4678899888888765421 10 001244578899999999999999999993 33333 334433211
Q ss_pred --CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 165 --DEFRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 165 --~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
.....++.++..... ...++|++|+++
T Consensus 256 vGese~~ir~lF~~A~~-----~aP~IifiDEiD 284 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKE-----KAPTIIFIDELD 284 (434)
T ss_dssp SSHHHHHHHHHHHHHHH-----HCSEEEEEECTH
T ss_pred cchHHHHHHHHHHHHHh-----cCCeEEeecchh
Confidence 223455555554422 357899999985
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.57 E-value=0.00014 Score=65.07 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=56.1
Q ss_pred CccccccchHHHHHHH---hhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC----CCCHH
Q 045522 95 EEICGRVDEKNELLSK---LLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD----TFDEF 167 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~---L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~----~~~~~ 167 (246)
..++|.++.++.+... +.... ...+-+.++|++|+|||+||+.+.+...... ..+.++.+. .....
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~l~~~~---~~~~~~~~~~~~~~~~~~ 109 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQELGSKV---PFCPMVGSEVYSTEIKKT 109 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHHHCTTS---CEEEEEGGGGCCSSSCHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHHhCCCc---eEEEEeHHHHHHHhhhhh
Confidence 5799999887765443 33322 2335688999999999999999998432212 223344332 22333
Q ss_pred HHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 168 RVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
..+..++..... .......+|++|+++.
T Consensus 110 ~~~~~~f~~a~~--~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 110 EVLMENFRRAIG--LRIKETKEVYEGEVTE 137 (456)
T ss_dssp HHHHHHHHHTEE--EEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHh--hhhcCCcEEEEechhh
Confidence 334444444311 0123678999999854
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.53 E-value=0.00015 Score=69.03 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=60.6
Q ss_pred CccccccchHHHHHHHhhC----CC---CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec----CC
Q 045522 95 EEICGRVDEKNELLSKLLC----ES---SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS----DT 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~ 163 (246)
.++.|.++.+++|.+.+.- .. .-+-...+-|.++|++|+|||+||+.+++.. ..+ .+.++.+ ..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHHHHHSSC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhHHhhccc
Confidence 4678899888888775421 11 0012345678999999999999999999943 333 3445532 22
Q ss_pred C-CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 F-DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 ~-~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
. ..+..++.++.... ....++|+||+++.
T Consensus 279 ~gese~~lr~lF~~A~-----~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 279 AGESESNLRKAFEEAE-----KNAPAIIFIDELDA 308 (806)
T ss_dssp TTHHHHHHHHHHHHHT-----TSCSEEEEEESGGG
T ss_pred chHHHHHHHHHHHHHH-----HcCCeEEEEehhcc
Confidence 2 23455566666653 34689999999964
No 78
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.51 E-value=6.4e-05 Score=67.61 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++||+++++.+...|.... ..-+.|+|++|+|||+||+.++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999986532 235679999999999999998873
No 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.50 E-value=3.6e-05 Score=67.02 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=54.2
Q ss_pred CccccccchHHHHHHHhhC----CC--------------------CCCCCCeEEEEEEeeCCchHHHHHHHHhccccccc
Q 045522 95 EEICGRVDEKNELLSKLLC----ES--------------------SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKR 150 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~----~~--------------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 150 (246)
..++|.+..++.|...+.. .. .........+.++|++|+|||++|+.+++.. ..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l--~~ 98 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL--DI 98 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT--TC
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh--CC
Confidence 4578988888888776620 00 0001123568899999999999999998833 22
Q ss_pred ccCeEEEEEecCCC-------CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCCCC
Q 045522 151 KFDKILWVCVSDTF-------DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWDGD 199 (246)
Q Consensus 151 ~F~~~~wv~~~~~~-------~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~~~ 199 (246)
.| +.+++.... +....+..++....... ......+|+||+++...
T Consensus 99 ~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 99 PI---AISDATSLTEAGYVGEDVENILTRLLQASDWNV-QKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CE---EEEEGGGCC--------CTHHHHHHHHHTTTCH-HHHTTSEEEEETGGGC-
T ss_pred CE---EEecchhhhhcCcCCccHHHHHHHHHhhccchh-hhcCCeEEEEcCHHHHh
Confidence 22 233332211 11223333333221110 11245689999997653
No 80
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.44 E-value=0.00012 Score=62.35 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=43.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe--cCC-----CCHHHHHHHHHHHccCCCCCCCCeEEEEEeC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV--SDT-----FDEFRVAKAMVEALDGHESRLGKRFLLVLDD 194 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~-----~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDd 194 (246)
-+++.|+|++|+|||+||.++... .-..++|++. .+. .+...++..+.+.+.. .+ +||+|+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~------~~-LLVIDs 190 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ------HR-VIVIDS 190 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH------CS-EEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh------CC-EEEEec
Confidence 467789999999999999998873 2223456665 111 3566666666655432 23 999999
Q ss_pred CCCC
Q 045522 195 VWDG 198 (246)
Q Consensus 195 v~~~ 198 (246)
+...
T Consensus 191 I~aL 194 (331)
T 2vhj_A 191 LKNV 194 (331)
T ss_dssp CTTT
T ss_pred cccc
Confidence 9653
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.43 E-value=0.00048 Score=62.33 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCccccccchHHHHHHHhh---CCCCC---CCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC--
Q 045522 94 EEEICGRVDEKNELLSKLL---CESSE---QQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD-- 165 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-- 165 (246)
-.+++|.++.++++.+... ....- +-.-.+-+.|+|++|+|||+||+.++... .. ..+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVEMF 104 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTSSC
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHHhh
Confidence 3579999887776655432 11000 00111238999999999999999999843 22 234455432111
Q ss_pred HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 166 EFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
.......+-..+... ......++++|+++.
T Consensus 105 ~g~~~~~v~~lfq~a--~~~~p~il~IDEId~ 134 (499)
T 2dhr_A 105 VGVGAARVRDLFETA--KRHAPCIVFIDEIDA 134 (499)
T ss_dssp TTHHHHHHHHHTTTS--SSSSSCEEEEECGGG
T ss_pred hhhHHHHHHHHHHHH--HhcCCCEEEEehHHH
Confidence 111111121222111 112457999999954
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.40 E-value=0.00098 Score=55.53 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=50.9
Q ss_pred CccccccchHHHHHHHhhCCCC--------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC-
Q 045522 95 EEICGRVDEKNELLSKLLCESS--------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD- 165 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~- 165 (246)
.++.|.++.++.|.+.+...-. .-..... +.|+|++|+||||||+.++..... ..+++...+-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 4577877777777654321000 0011122 999999999999999999884322 244555333211
Q ss_pred ----HHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 166 ----EFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 166 ----~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
....+..+.+... ....+++++|+++.
T Consensus 84 ~~~~~~~~i~~vf~~a~-----~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAK-----NSAPCVIFFDEVDA 114 (274)
T ss_dssp TTHHHHHHHHHHHHHHH-----HTCSEEEEEETCTT
T ss_pred hhhHHHHHHHHHHHHHH-----hcCCCeEeeehhhh
Confidence 1222333333321 12467999999965
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.37 E-value=0.00025 Score=67.88 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=56.9
Q ss_pred CccccccchHHHHHHHhhCCC-------CCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC----
Q 045522 95 EEICGRVDEKNELLSKLLCES-------SEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT---- 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---- 163 (246)
.+++|.+..+++|.+++...- .-.-.....+.|+|++|+||||||+.+... ....| +.++...-
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~l~~~~ 278 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHHHSSSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchHhhhhh
Confidence 568999999999888774300 001123456899999999999999999883 33333 44443211
Q ss_pred C-CHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 164 F-DEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 164 ~-~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
. .....+..++.... .....++++|+++.
T Consensus 279 ~g~~~~~l~~vf~~a~-----~~~p~il~iDEid~ 308 (806)
T 1ypw_A 279 AGESESNLRKAFEEAE-----KNAPAIIFIDELDA 308 (806)
T ss_dssp TTHHHHHHHHHHHHHH-----HHCSEEEEEESGGG
T ss_pred hhhHHHHHHHHHHHHH-----hcCCcEEEeccHHH
Confidence 1 12233333444332 22467999999953
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.24 E-value=0.0033 Score=53.74 Aligned_cols=118 Identities=7% Similarity=-0.047 Sum_probs=77.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC-CCc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD-GDY 200 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~-~~~ 200 (246)
.++..++|+.|.||++.+..+..... ...|.....+.+....+..++...+...- +.+++-++|+|+++. ...
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~p-----lf~~~kvvii~~~~~kl~~ 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQAMS-----LFASRQTLLLLLPENGPNA 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHHHHH-----HCCSCEEEEEECCSSCCCT
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhcCcC-----CccCCeEEEEECCCCCCCh
Confidence 46899999999999999988876321 12343222233445567777665543221 446788999999977 544
Q ss_pred cCHHHHHHhhcCCCCCcEEEEecCC-------hhHHhhcC-CCceEeCCCCCC
Q 045522 201 IKWKPFYHCLKNGLHESKILVTTRK-------GSVTSMMG-STDIISVKELTK 245 (246)
Q Consensus 201 ~~~~~l~~~l~~~~~gs~IliTtR~-------~~va~~~~-~~~~~~l~~L~~ 245 (246)
..++.|..++....+++.+|+++-. ..+...+. ....++..+++.
T Consensus 92 ~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 92 AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (343)
T ss_dssp THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH
Confidence 6678898888877677877776532 24444443 356777777764
No 85
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.21 E-value=0.00034 Score=55.32 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=32.9
Q ss_pred ccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 100 RVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 100 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
|++.++.+.+.+.... .....+++|.|+.|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777888776543 14457999999999999999998876
No 86
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.12 E-value=0.0002 Score=61.44 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.+++.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4688888777777666543200 0123467899999999999999999984
No 87
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.06 E-value=0.00046 Score=62.48 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=59.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHH-
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAM- 173 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i- 173 (246)
+.++|.++.++.+...+..+ ..+.|+|++|+|||+||+.+.+.......| .++.+.- .+...+....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f---~~~~~~~-~t~~dL~G~~~ 89 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNARAF---EYLMTRF-STPEEVFGPLS 89 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGBSSCCEE---EEECCTT-CCHHHHHCCBC
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHHhhhhHH---HHHHHhc-CCHHHhcCccc
Confidence 35889999898888877653 368899999999999999999844222222 1222211 1333322210
Q ss_pred HHHc--cCCCC--CCC---CeEEEEEeCCCCCCccCHHHHHHhhc
Q 045522 174 VEAL--DGHES--RLG---KRFLLVLDDVWDGDYIKWKPFYHCLK 211 (246)
Q Consensus 174 ~~~~--~~~~~--~~~---kr~LlVlDdv~~~~~~~~~~l~~~l~ 211 (246)
.... .+... ..+ ...++++|+++.........|...+.
T Consensus 90 ~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~le 134 (500)
T 3nbx_X 90 IQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAIN 134 (500)
T ss_dssp ----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHH
T ss_pred HHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHH
Confidence 0000 00000 111 23479999998765455556666664
No 88
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.02 E-value=0.00041 Score=59.98 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=36.0
Q ss_pred ccccccchHHHHHHHhhCC-------C--CCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 96 EICGRVDEKNELLSKLLCE-------S--SEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789998888888777210 0 001123457889999999999999999983
No 89
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.02 E-value=0.00025 Score=58.47 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=35.1
Q ss_pred CccccccchHHHHHHHhhCCCCC------CCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|.+..++.+.+.+..-... .....+.+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999888887755310000 0011233779999999999999999884
No 90
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.02 E-value=0.00091 Score=52.32 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=24.7
Q ss_pred CCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC
Q 045522 185 GKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 185 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~ 225 (246)
++.-+|++|.+...+ .+|......+.+. |..|++|.++
T Consensus 75 ~~~dvviIDE~Q~~~-~~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 75 EDTRGVFIDEVQFFN-PSLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TTEEEEEECCGGGSC-TTHHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCCEEEEECcccCC-HHHHHHHHHHHHC--CCCEEEEeec
Confidence 356699999997764 3455544434333 6779988774
No 91
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.01 E-value=0.0012 Score=57.07 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
+.-.++.|+|++|+|||||+..+.... ...-..++|++....++.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccch
Confidence 344799999999999999999888733 222245778876655543
No 92
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.99 E-value=0.00053 Score=54.48 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.6
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.++|.+.+... .....+++|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555432 144579999999999999999988763
No 93
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0022 Score=57.30 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=52.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC---------------------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE--------------------- 181 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~--------------------- 181 (246)
+.+.|.|++|+|||+++..+........ ...++.+. ........+ ...++...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~a-~T~~Aa~~l----~~~~~~~~~T~h~~~~~~~~~~~~~~~~~ 119 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG-ETGIILAA-PTHAAKKIL----SKLSGKEASTIHSILKINPVTYEENVLFE 119 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEEE-SSHHHHHHH----HHHHSSCEEEHHHHHTEEEEECSSCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEec-CcHHHHHHH----HhhhccchhhHHHHhccCcccccccchhc
Confidence 3899999999999999988877432221 12333332 221111111 11111100
Q ss_pred ----CCCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChh
Q 045522 182 ----SRLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGS 227 (246)
Q Consensus 182 ----~~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~ 227 (246)
....+.-++|+|++...+...+..|...++ .++++++.--..+
T Consensus 120 ~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 120 QKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp ECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred ccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 011234589999997665455555665554 4567777654443
No 94
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.84 E-value=0.00054 Score=52.07 Aligned_cols=20 Identities=45% Similarity=0.715 Sum_probs=18.7
Q ss_pred EEEEEEeeCCchHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLT 142 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v 142 (246)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 95
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.81 E-value=0.00074 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999874
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.79 E-value=0.0052 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.+++|+|+.|+|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46999999999999999998765
No 97
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.79 E-value=0.0021 Score=55.45 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=31.8
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
.-.++.|+|++|+||||||..+.... ...-..++|++....++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCH
Confidence 34689999999999999998887632 222346788887665543
No 98
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.78 E-value=0.00064 Score=52.23 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 99
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.76 E-value=0.00068 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 100
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.75 E-value=0.00076 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999887
No 101
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.74 E-value=0.0014 Score=54.90 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.1
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555554332 234467899999999999999999976
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.74 E-value=0.002 Score=51.00 Aligned_cols=45 Identities=24% Similarity=0.170 Sum_probs=33.3
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHH
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 170 (246)
.-.++.|+|++|+|||||+..+.. ..-..++|++....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH
Confidence 346899999999999999998877 123467888876655554443
No 103
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.71 E-value=0.0048 Score=52.48 Aligned_cols=43 Identities=7% Similarity=-0.086 Sum_probs=30.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
++-|.|++|+|||||+..+......+..-..++|++..+.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 6899999999999999777663221111357888886665543
No 104
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.71 E-value=0.00091 Score=56.28 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|+|.|+.|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55689999999999999999887663
No 105
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.69 E-value=0.0027 Score=56.79 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=32.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHH
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAM 173 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 173 (246)
.++|+|++|+|||||++.+......+ .-..++++.+++.. ...+++..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHh
Confidence 58899999999999999888743222 22455667776654 334444434
No 106
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.0016 Score=53.43 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=29.9
Q ss_pred hHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 103 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 103 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+.+...+..... ......+|.|.|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34445555554432 3345678999999999999999998773
No 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0009 Score=51.88 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 108
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.63 E-value=0.0016 Score=55.54 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=32.6
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 97 ICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 97 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|....+..+...++... ......+++|.|+.|+|||||++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444455555555555543 235678999999999999999988865
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.00074 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|+|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998873
No 110
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.63 E-value=0.00089 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 111
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.62 E-value=0.0012 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.1
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+|.|+|++|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998874
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.61 E-value=0.0043 Score=49.84 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=33.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccccccc----ccCeEEEEEecCCCCHH
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKR----KFDKILWVCVSDTFDEF 167 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~ 167 (246)
.-.++.|+|++|+|||||+..+........ .-..++|++....+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 73 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE 73 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence 346899999999999999998876321211 13578888876654443
No 113
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.61 E-value=0.0057 Score=48.29 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCC---CCccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 185 GKRFLLVLDDVWD---GDYIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 185 ~kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
++--|||||++-. ......+++...+........||+|+|..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4455999999832 12255677888887776778899999984
No 114
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.61 E-value=0.0011 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 115
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.60 E-value=0.0013 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 116
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.58 E-value=0.0011 Score=54.18 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999988763
No 117
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.57 E-value=0.00098 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+.|.|+|++|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999998763
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.55 E-value=0.0057 Score=52.88 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=52.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhccccccccc-CeEEE---------------E---EecC-CCCHHHHHHHHHHHccCCCC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKF-DKILW---------------V---CVSD-TFDEFRVAKAMVEALDGHES 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~w---------------v---~~~~-~~~~~~~~~~i~~~~~~~~~ 182 (246)
.+++|+|+.|+|||||.+.+..... ... ..++. + .+.. ..+... .+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---~La~a------ 192 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE---ALRSA------ 192 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HHHHH------
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---HHHHH------
Confidence 5999999999999999998765211 110 11111 1 1111 112222 22233
Q ss_pred CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCChhHHh
Q 045522 183 RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRKGSVTS 230 (246)
Q Consensus 183 ~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~va~ 230 (246)
+....-+|++|+.-+. ..+..+..... .|..||+|+...+.+.
T Consensus 193 L~~~PdvillDEp~d~--e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 193 LREDPDIILVGEMRDL--ETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp TTSCCSEEEESCCCSH--HHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred hhhCcCEEecCCCCCH--HHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 4456778999999643 34444333322 3556899998876553
No 119
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.54 E-value=0.0058 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998874
No 120
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.54 E-value=0.0012 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999998876
No 121
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.53 E-value=0.0016 Score=52.69 Aligned_cols=24 Identities=21% Similarity=-0.076 Sum_probs=20.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.++.|+|+.|+||||++..+...
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH
Confidence 478999999999999999776653
No 122
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.53 E-value=0.0015 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.++.|+|++|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 123
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.52 E-value=0.0015 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=21.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+++|+|+.|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999988763
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.51 E-value=0.0048 Score=53.57 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=31.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
-.++.|.|++|+||||||..+.... ...-..++|++....++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhH
Confidence 4588899999999999998877632 222347888887665543
No 125
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.47 E-value=0.0013 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 126
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.47 E-value=0.0014 Score=50.40 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHh
Q 045522 122 LHIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~ 143 (246)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999644
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.47 E-value=0.0013 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+++|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 128
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.46 E-value=0.0014 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998773
No 129
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.45 E-value=0.0022 Score=50.62 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|+|+|++|+|||||++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999998774
No 130
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.45 E-value=0.0016 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999875
No 131
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.44 E-value=0.00084 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+.|.|+||+|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 132
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.44 E-value=0.0011 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 133
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.43 E-value=0.0019 Score=50.53 Aligned_cols=25 Identities=44% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+|+|.|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999999876
No 134
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0016 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++.|.|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999988753
No 135
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.43 E-value=0.0056 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.+++|+|+.|+|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999988865
No 136
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.42 E-value=0.0016 Score=52.35 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
...++|.|.|++|+||+|.|+.+...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998743
No 137
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.41 E-value=0.0016 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988654
No 138
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.41 E-value=0.0062 Score=48.42 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=30.5
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccc---c-ccCeEEEEEecCCCC
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVK---R-KFDKILWVCVSDTFD 165 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~ 165 (246)
.-.+++|+|+.|+|||||++.+....... . .-..++|+.....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 34799999999999999999987522111 0 134577777554433
No 139
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.40 E-value=0.0012 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.40 E-value=0.0016 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|+|||||++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998763
No 141
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.40 E-value=0.0016 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988765
No 142
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.40 E-value=0.013 Score=52.52 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=38.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEA 176 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~ 176 (246)
.-++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+++.. ...++++++.+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 568999999999999998888732 12344677888887765 455666666653
No 143
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.39 E-value=0.0021 Score=50.47 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|.|.|++|+||||+++.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999988763
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.39 E-value=0.0018 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 145
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0018 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998876
No 146
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.37 E-value=0.0017 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999873
No 147
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.37 E-value=0.0013 Score=62.61 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC----
Q 045522 94 EEEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD---- 162 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---- 162 (246)
-.++.|.++.+++|.+.+..... .+....+-+.++|++|+|||.||+++++. ...+| +-+..++
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f---~~v~~~~l~s~ 550 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF---ISIKGPELLTM 550 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE---EECCHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce---EEeccchhhcc
Confidence 34677888888877765533210 01233456789999999999999999994 33333 1112111
Q ss_pred C-CCHHHHHHHHHHHccCCCCCCCCeEEEEEeCCCC
Q 045522 163 T-FDEFRVAKAMVEALDGHESRLGKRFLLVLDDVWD 197 (246)
Q Consensus 163 ~-~~~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~~ 197 (246)
. -..+..+..++.... ....++|+||+++.
T Consensus 551 ~vGese~~vr~lF~~Ar-----~~~P~IifiDEiDs 581 (806)
T 3cf2_A 551 WFGESEANVREIFDKAR-----QAAPCVLFFDELDS 581 (806)
T ss_dssp TCSSCHHHHHHHHHHHH-----TTCSEEEECSCGGG
T ss_pred ccchHHHHHHHHHHHHH-----HcCCceeechhhhH
Confidence 0 122345555665553 23679999999864
No 148
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.36 E-value=0.0018 Score=50.86 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 045522 124 IISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998876
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.34 E-value=0.0014 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|.|.|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999998763
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.34 E-value=0.002 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....|.|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988773
No 151
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.34 E-value=0.0015 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 152
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.33 E-value=0.0026 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 153
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.32 E-value=0.0017 Score=49.42 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998773
No 154
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0022 Score=50.57 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 155
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.30 E-value=0.0082 Score=51.05 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=35.8
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccc----cCeEEEEEecCCCCHHHHH
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRK----FDKILWVCVSDTFDEFRVA 170 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~ 170 (246)
.-.++.|+|++|+||||||..+......... -..++|++....++...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~ 159 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE 159 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3468999999999999999888763221111 2478999988776665544
No 156
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.30 E-value=0.0033 Score=54.30 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=28.5
Q ss_pred cchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 101 VDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 101 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+.-.+.+++.+...- .......+.|+|++|+||||+++.++.
T Consensus 5 ~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 5 HKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 444555555553222 123456789999999999999988766
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.29 E-value=0.0018 Score=49.68 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998773
No 158
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.29 E-value=0.0015 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+.++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998865
No 159
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.28 E-value=0.0024 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..|.|.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 160
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.27 E-value=0.012 Score=52.64 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=37.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEA 176 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~ 176 (246)
.-++|.|.+|+|||+|+..+.+... +.+-+.++++-+++.. ...++++.+.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5789999999999999998877321 2334567777777654 445666766654
No 161
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.27 E-value=0.0022 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.27 E-value=0.0018 Score=52.81 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=48.9
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC----C
Q 045522 95 EEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD----T 163 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~----~ 163 (246)
.+++|.++.++++.+....-.. .-... +-+.|+|++|+|||||++.++... . ...+.++... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVEMF 89 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-SEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHHHHHHSC
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHHHHHHHH
Confidence 4688887766655443321000 00011 228999999999999999999843 2 2233343211 1
Q ss_pred CC-HHHHHHHHHHHccCCCCCCCCeEEEEEeCCC
Q 045522 164 FD-EFRVAKAMVEALDGHESRLGKRFLLVLDDVW 196 (246)
Q Consensus 164 ~~-~~~~~~~i~~~~~~~~~~~~kr~LlVlDdv~ 196 (246)
.. ....+..+++... .....++++|+++
T Consensus 90 ~~~~~~~i~~~~~~~~-----~~~~~i~~~Deid 118 (254)
T 1ixz_A 90 VGVGAARVRDLFETAK-----RHAPCIVFIDEID 118 (254)
T ss_dssp TTHHHHHHHHHHHHHT-----TSSSEEEEEETHH
T ss_pred hhHHHHHHHHHHHHHH-----hcCCeEEEehhhh
Confidence 11 1122233333332 1245799999994
No 163
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.26 E-value=0.0023 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998743
No 164
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.26 E-value=0.0028 Score=49.06 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+|.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998874
No 165
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.25 E-value=0.0024 Score=50.15 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=21.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|.|.|++|+||||+|+.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33458999999999999999998773
No 166
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.25 E-value=0.015 Score=49.81 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccccc----ccCeEEEEEecCCCCHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKR----KFDKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~ 171 (246)
+.-.++.|+|++|+||||||..++....... .-..++|++....++...+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 4457999999999999999988876422211 235788999888777665443
No 167
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.23 E-value=0.018 Score=61.44 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=55.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC--------C-CCCCeEEEEEe
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE--------S-RLGKRFLLVLD 193 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~--------~-~~~kr~LlVlD 193 (246)
+-+.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+...+-..+.... + -.+++.++++|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEec
Confidence 578899999999999997666532 122 4456778887787777666665543211 1 25788999999
Q ss_pred CCCCCCcc------CHHHHHHhhc
Q 045522 194 DVWDGDYI------KWKPFYHCLK 211 (246)
Q Consensus 194 dv~~~~~~------~~~~l~~~l~ 211 (246)
|++-...+ ..+.|+..+.
T Consensus 1344 Einmp~~d~yg~q~~lelLRq~le 1367 (2695)
T 4akg_A 1344 EINLPKLDKYGSQNVVLFLRQLME 1367 (2695)
T ss_dssp TTTCSCCCSSSCCHHHHHHHHHHH
T ss_pred ccccccccccCchhHHHHHHHHHh
Confidence 98654323 2344555554
No 168
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.23 E-value=0.0015 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 169
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.23 E-value=0.0024 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 170
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.23 E-value=0.0022 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 171
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.21 E-value=0.003 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.21 E-value=0.0024 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998764
No 173
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.20 E-value=0.0035 Score=55.80 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHhhCC--------CCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.++.++.+...+... .-......+-+.++|++|+|||++|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46899888888887666321 0000123456889999999999999999873
No 174
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.19 E-value=0.0061 Score=47.29 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 175
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.17 E-value=0.0032 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+++|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999998876
No 176
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.16 E-value=0.0021 Score=50.76 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 177
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.15 E-value=0.0041 Score=49.55 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+..+..++.. . +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-i----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-T----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-C----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555532 1 33457999999999999999888874
No 178
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.15 E-value=0.0028 Score=50.16 Aligned_cols=25 Identities=16% Similarity=0.515 Sum_probs=21.7
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999998763
No 179
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.14 E-value=0.0025 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998773
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.13 E-value=0.0019 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998773
No 181
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.12 E-value=0.002 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.049 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-..++|+|++|+|||||++.+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHH
Confidence 35899999999999999998876
No 182
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.11 E-value=0.0027 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 183
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.10 E-value=0.02 Score=49.95 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=65.5
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
.++|....++++.+.+..-.. .... |.|.|.+|+|||++|+.+.... ...-..-+-++++.- ....+...+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~s--~r~~~~fv~v~~~~~-~~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLS--DRSKEPFVALNVASI-PRDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHS--TTTTSCEEEEETTTS-CHHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHhc--CCCCCCeEEEecCCC-CHHHHHHHhcC
Confidence 466666667766665543221 2233 4899999999999999988632 222222233454432 22222223332
Q ss_pred HccCCCC--CC--------CCeEEEEEeCCCCCCccCHHHHHHhhcCC------C-----CCcEEEEecCC
Q 045522 176 ALDGHES--RL--------GKRFLLVLDDVWDGDYIKWKPFYHCLKNG------L-----HESKILVTTRK 225 (246)
Q Consensus 176 ~~~~~~~--~~--------~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~IliTtR~ 225 (246)
.-.+... .. ...=.|+||++..........|...+..+ + ...+||.||..
T Consensus 211 ~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 211 YEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp BCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 2111110 00 01226889999877655555566665432 1 23578877764
No 184
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.10 E-value=0.011 Score=49.96 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccccc---------cc-----CeEEEEEecCCCCHHHHHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKR---------KF-----DKILWVCVSDTFDEFRVAK 171 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~ 171 (246)
+.-.++.|+|++|+|||+||..++....... .. ..++|++....++...+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~ 161 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence 3447999999999999999988775321111 11 4788999888776665553
No 185
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.09 E-value=0.0031 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 186
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.09 E-value=0.0034 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998866
No 187
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.09 E-value=0.0029 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998773
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.07 E-value=0.003 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.07 E-value=0.01 Score=50.34 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=33.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
-.++.|.|.+|+||||||..++.+...++ ..++|++... +...+...++
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHH
Confidence 46899999999999999988776433222 5788887653 3444444433
No 190
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.06 E-value=0.0025 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998875
No 191
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.05 E-value=0.011 Score=51.00 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=31.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccccccccc----CeEEEEEecCCCC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKF----DKILWVCVSDTFD 165 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~ 165 (246)
+.-.++.|+|++|+|||||+..++......... ..++|++....+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 445899999999999999999887633111111 3458887655443
No 192
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.04 E-value=0.0021 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=17.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 193
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.04 E-value=0.0027 Score=52.59 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=33.5
Q ss_pred CCccccccchHHHHHHHhhCCCC-------CCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 94 EEEICGRVDEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
-.+++|.++.++++.+....-.. .-... +-+.|+|++|+|||||++.++...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCcChHHHHHHHHHHHc
Confidence 35788988776666543321000 00011 228999999999999999999843
No 194
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.04 E-value=0.0031 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+++.|.|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998874
No 195
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.03 E-value=0.0031 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999998863
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.01 E-value=0.0045 Score=49.20 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=26.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
.++.|+|++|+|||||++.+..... ..-..++|++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~ 60 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTE 60 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcc
Confidence 6899999999999999998875322 122355666543
No 197
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.01 E-value=0.0039 Score=57.73 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=35.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899988888877777543 47899999999999999999874
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.01 E-value=0.0039 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.+|.|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999877
No 199
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.00 E-value=0.0034 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|+|+|+.|+|||||++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998873
No 200
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.00 E-value=0.008 Score=50.75 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+++|.|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998876
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.99 E-value=0.0035 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHh
Q 045522 122 LHIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~ 143 (246)
-.+++|+|+.|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3689999999999999999877
No 202
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.99 E-value=0.0033 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.98 E-value=0.0035 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998763
No 204
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0053 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|.++|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999988764
No 205
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.96 E-value=0.0036 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+++|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999998875
No 206
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.95 E-value=0.0048 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHh
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~ 143 (246)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446799999999999999999886
No 207
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.93 E-value=0.0036 Score=49.63 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 208
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.93 E-value=0.012 Score=49.03 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=26.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccC-eEEEEEe
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFD-KILWVCV 160 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~ 160 (246)
-.+++|.|++|+|||||+..+...... ... .++|++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeC
Confidence 368999999999999999988774322 222 4666654
No 209
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.91 E-value=0.0033 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998873
No 210
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.90 E-value=0.0071 Score=52.12 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..++...+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 4568999999999999999988764
No 211
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.90 E-value=0.0094 Score=54.84 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=49.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHH-------HHHccCCC-------CCCCCeE
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAM-------VEALDGHE-------SRLGKRF 188 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i-------~~~~~~~~-------~~~~kr~ 188 (246)
+++.|.|++|+||||++..+...... . ...+.+..........+.+.+ -+-++... ....+--
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~--~-g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~d 281 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES--L-GLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYD 281 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH--T-TCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh--c-CCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCC
Confidence 58889999999999999888763322 1 123334433322222222111 01110000 0011234
Q ss_pred EEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEecC
Q 045522 189 LLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVTTR 224 (246)
Q Consensus 189 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR 224 (246)
+||+|++...+...+..|...++ .++++|+.-=
T Consensus 282 vlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 282 LLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp EEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred EEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 89999996654444444544443 4667777543
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.89 E-value=0.0053 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 369999999999999999988763
No 213
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.88 E-value=0.0045 Score=52.60 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=20.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+.++|+|.|-|||||||.+-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999998865544
No 214
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.88 E-value=0.0051 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998876
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.88 E-value=0.017 Score=50.71 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=33.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccccccc----ccCeEEEEEecCCCCHHHH
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKR----KFDKILWVCVSDTFDEFRV 169 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~ 169 (246)
.-.++.|+|++|+|||||+..++-...... .-..++|++....+....+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 346999999999999999997653211111 2346888887766555443
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.0065 Score=48.81 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=27.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
-.++.|.|++|+||||||..++.... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 36899999999999999877765321 1224677776543
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.87 E-value=0.0041 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999884
No 218
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.0034 Score=48.52 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.+++|+|+.|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999887743
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.86 E-value=0.0052 Score=48.86 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|.|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34688999999999999999888764
No 220
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.84 E-value=0.0042 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999998773
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.84 E-value=0.0052 Score=48.68 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998773
No 222
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.81 E-value=0.013 Score=52.64 Aligned_cols=69 Identities=23% Similarity=0.239 Sum_probs=45.2
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccC-eEEEEEecCCC-CHHHHHHHHHHHccCCC----------C-------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFD-KILWVCVSDTF-DEFRVAKAMVEALDGHE----------S------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~~----------~------- 182 (246)
.-++|.|.+|+|||+|| ..+.+.. +-+ .++++-+++.. ...++.+.+...-.... +
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999995 5777732 234 35667777654 34455555544211110 0
Q ss_pred ------------CCCCeEEEEEeCC
Q 045522 183 ------------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ------------~~~kr~LlVlDdv 195 (246)
-.++..||++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 4689999999998
No 223
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.81 E-value=0.0047 Score=49.77 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998865
No 224
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.81 E-value=0.003 Score=50.82 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=15.9
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 225
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.80 E-value=0.0054 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 226
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.79 E-value=0.0044 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999865
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.78 E-value=0.007 Score=52.33 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=31.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
.-.++.|.|++|+||||||..+..... ..-..++|++....++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccH
Confidence 346899999999999999988776322 22246888887665543
No 228
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.78 E-value=0.01 Score=52.75 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=46.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccc--cccCeEEEEEecCCC-CHHHHHHHHHHHc--cC--------CCC-------
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVK--RKFDKILWVCVSDTF-DEFRVAKAMVEAL--DG--------HES------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~-~~~~~~~~i~~~~--~~--------~~~------- 182 (246)
.-++|.|..|+|||+|+..+.+..... +.--.++++-+++.. ...++++.+...- .. +.+
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 346789999999999999988854331 111156666666543 4455666554421 11 111
Q ss_pred ------------C-CCCeEEEEEeCC
Q 045522 183 ------------R-LGKRFLLVLDDV 195 (246)
Q Consensus 183 ------------~-~~kr~LlVlDdv 195 (246)
- .++..||++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2 589999999998
No 229
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.78 E-value=0.012 Score=52.97 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=45.3
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccC-eEEEEEecCCC-CHHHHHHHHHHHccC----------CCC-------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFD-KILWVCVSDTF-DEFRVAKAMVEALDG----------HES------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~~~~----------~~~------- 182 (246)
.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++.. ...++.+.+...-.. +.+
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46889999999999995 5777733 234 35667777654 344555555442110 011
Q ss_pred ------------CCCCeEEEEEeCC
Q 045522 183 ------------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ------------~~~kr~LlVlDdv 195 (246)
-.++..||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 4689999999998
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.77 E-value=0.0087 Score=51.15 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+++|+|+.|+||||+++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999988763
No 231
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.77 E-value=0.0042 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEeeCCchHHHHHHHHhccc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
+|.|.|++|+||+|.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998843
No 232
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.75 E-value=0.0092 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....++.|+|++|+||||++..++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 45679999999999999999988763
No 233
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.73 E-value=0.0042 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 234
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.0064 Score=48.16 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....++.|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34689999999999999999888764
No 235
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.70 E-value=0.0052 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 045522 124 IISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998866
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.70 E-value=0.0052 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999865
No 237
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.68 E-value=0.0065 Score=51.28 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....+++|+|+.|+||||+++.++.-
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34579999999999999999887653
No 238
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.64 E-value=0.0081 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...++|+|+.|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 239
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.64 E-value=0.0061 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998773
No 240
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.63 E-value=0.02 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+|.++|++|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988775
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.62 E-value=0.0062 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+++++|++|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999888763
No 242
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.61 E-value=0.0039 Score=57.64 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHhhCCCCC---C--CCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 95 EEICGRVDEKNELLSKLLCESSE---Q--QKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~---~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+.++|.+...+.+...|..+... + .....-+.++|++|+|||+||+.+.+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 56899888777766655443200 0 000115889999999999999998874
No 243
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.60 E-value=0.011 Score=48.89 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=26.9
Q ss_pred HHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 106 ELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 106 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+..+|.... +....+.++|++|+|||.+|..+.+.
T Consensus 92 ~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3555664321 33467999999999999999999873
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.60 E-value=0.0057 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999774
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.60 E-value=0.0048 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.59 E-value=0.0058 Score=50.46 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 247
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.59 E-value=0.0061 Score=48.84 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998773
No 248
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.58 E-value=0.0056 Score=47.11 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 249
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.57 E-value=0.0065 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 250
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.57 E-value=0.014 Score=47.14 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
....|.|.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998844
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.56 E-value=0.0061 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999865
No 252
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.55 E-value=0.0085 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 253
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.55 E-value=0.01 Score=52.86 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=34.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccc--------cccC-eEEEEEecCCC-CHHHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVK--------RKFD-KILWVCVSDTF-DEFRVAKAMVE 175 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~ 175 (246)
.-++|.|.+|+|||+|+..+.+..... ++=+ .++++-+++.. ...++.+.+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 456789999999999999888854431 1111 56666666543 34555555443
No 254
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.54 E-value=0.0067 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999988773
No 255
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.53 E-value=0.0066 Score=49.33 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+|.|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 256
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.53 E-value=0.0077 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-.+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44579999999999999999998873
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.53 E-value=0.0064 Score=47.08 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++.|.|+.|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999988873
No 258
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.52 E-value=0.0064 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998653
No 259
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.51 E-value=0.011 Score=48.93 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999875
No 260
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.51 E-value=0.0064 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999865
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.49 E-value=0.007 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|.|++|+||||+|+.+...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 262
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.49 E-value=0.01 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....++.+.|.||+|||||+..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567888999999999999998875
No 263
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.48 E-value=0.0071 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999887
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.47 E-value=0.0069 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999865
No 265
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.47 E-value=0.0076 Score=49.13 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999865
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.46 E-value=0.0071 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 267
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.45 E-value=0.0057 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 268
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.44 E-value=0.011 Score=45.15 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|+++|.+|+|||||.+.+...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999998863
No 269
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.44 E-value=0.011 Score=50.26 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....++.|+|++|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988765
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.44 E-value=0.007 Score=49.51 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||++.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998653
No 271
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.44 E-value=0.0065 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...++|+|+.|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 272
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.43 E-value=0.01 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998763
No 273
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.43 E-value=0.0076 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998873
No 274
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.43 E-value=0.0078 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.|+|+.|+||||||..+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.41 E-value=0.0061 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 276
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.41 E-value=0.0092 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 277
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.40 E-value=0.0095 Score=44.19 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+-|.++|.+|+|||||++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988764
No 278
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.40 E-value=0.0075 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998753
No 279
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.098 Score=41.91 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.0
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
..+.|.|+.|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478999999999998765443
No 280
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.37 E-value=0.0076 Score=50.05 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCCCeEEEEEeCCCCC-CccCHHHHHHhhcCC--CCCcEEEEecCChhHHh
Q 045522 183 RLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNG--LHESKILVTTRKGSVTS 230 (246)
Q Consensus 183 ~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTtR~~~va~ 230 (246)
+-.+.-+|+||+--.. |...-..+...+..- ..|..||++|.+.+.+.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 4567789999987554 222233344555432 23677889998877665
No 281
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.37 E-value=0.035 Score=49.91 Aligned_cols=70 Identities=24% Similarity=0.260 Sum_probs=45.9
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccCeEEEEEecCCC-CHHHHHHHHHHHccCC----------CC--------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFDKILWVCVSDTF-DEFRVAKAMVEALDGH----------ES-------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~----------~~-------- 182 (246)
.-++|.|..|+|||+|| ..+.+. +..-..++++-+++.. ...++.+.+.+.-... .+
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh---ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 46789999999999996 567662 1222246778887654 3455666554431111 11
Q ss_pred -----------CCCCeEEEEEeCC
Q 045522 183 -----------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 -----------~~~kr~LlVlDdv 195 (246)
-.++..||++||+
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHhcCCCEEEEecCh
Confidence 4589999999998
No 282
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.36 E-value=0.0086 Score=44.40 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-|.++|.+|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
No 283
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.36 E-value=0.0077 Score=49.66 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998653
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.34 E-value=0.0097 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.8
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999888663
No 285
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.34 E-value=0.03 Score=60.53 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=56.1
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHcc---CC-
Q 045522 105 NELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALD---GH- 180 (246)
Q Consensus 105 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~---~~- 180 (246)
..++..++... ..|.++|++|+|||.++..+... ..+ + ..+.++.+...+...++..+-..+. ..
T Consensus 1294 ~~ll~~ll~~~-------~pvLL~GptGtGKT~li~~~L~~--l~~-~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~ 1362 (3245)
T 3vkg_A 1294 VDVLHAWLSEH-------RPLILCGPPGSGKTMTLTSTLRA--FPD-F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPS 1362 (3245)
T ss_dssp HHHHHHHHHTT-------CCCEEESSTTSSHHHHHHHHGGG--CTT-E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTT
T ss_pred HHHHHHHHHCC-------CcEEEECCCCCCHHHHHHHHHHh--CCC-C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccC
Confidence 34555555433 46789999999999888776652 211 2 3467888888888887777654432 11
Q ss_pred -C----CC-CCCeEEEEEeCCCCCC
Q 045522 181 -E----SR-LGKRFLLVLDDVWDGD 199 (246)
Q Consensus 181 -~----~~-~~kr~LlVlDdv~~~~ 199 (246)
. +. .|++.++++||+.-..
T Consensus 1363 ~G~~~~p~~~Gk~~VlFiDDiNmp~ 1387 (3245)
T 3vkg_A 1363 GETVLRPTQLGKWLVVFCDEINLPS 1387 (3245)
T ss_dssp SCEEEEESSTTCEEEEEETTTTCCC
T ss_pred CCcccCCCcCCceEEEEecccCCCC
Confidence 1 13 4888999999997654
No 286
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.33 E-value=0.0083 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 287
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.33 E-value=0.0042 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=18.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 288
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.31 E-value=0.009 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 045522 124 IISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998765
No 289
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.31 E-value=0.016 Score=60.18 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHH
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEF 167 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 167 (246)
...+.+.|+|++|+|||+||.++.... ..+=..++|+++.+.++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l 1470 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI 1470 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHH
Confidence 345789999999999999998887732 2333466777776655443
No 290
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.0092 Score=49.41 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=29.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccccccc--------ccCeEEEEEecCCC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKR--------KFDKILWVCVSDTF 164 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~wv~~~~~~ 164 (246)
-.++.|+|++|+|||||+..+........ .-..+++++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 36899999999999999988775322110 01356677766543
No 291
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.30 E-value=0.0082 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999865
No 292
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.30 E-value=0.0084 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998653
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.29 E-value=0.009 Score=50.52 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999998865
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.29 E-value=0.02 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+++|+|+.|+|||||++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3457999999999999999998876
No 295
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.29 E-value=0.0099 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+|.|.|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999988763
No 296
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.26 E-value=0.011 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.7
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+|.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999988763
No 297
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.23 E-value=0.03 Score=49.64 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCC---CCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 104 KNELLSKLLCESS---EQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 104 ~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++.+.|..... ......++|.++|.+|+||||++..+...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456666543211 01245689999999999999999887753
No 298
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.21 E-value=0.032 Score=50.80 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=33.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH-HHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE-FRVAKA 172 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~ 172 (246)
.-++|.|..|+|||+|+..+.+.. +-+.++++-+++..+. .++++.
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 568999999999999999987632 2357788888776554 444444
No 299
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.20 E-value=0.0099 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998875
No 300
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.19 E-value=0.013 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.066 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+...+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446999999999999999999987
No 301
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.18 E-value=0.014 Score=43.85 Aligned_cols=24 Identities=33% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999988764
No 302
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.16 E-value=0.018 Score=44.07 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.|+|.+|+|||||.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998764
No 303
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.15 E-value=0.13 Score=41.48 Aligned_cols=85 Identities=20% Similarity=0.101 Sum_probs=48.4
Q ss_pred EEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccC---C-CC------------------
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDG---H-ES------------------ 182 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~---~-~~------------------ 182 (246)
+.|+|+.|.|||.+|..+.... -..++++. .. ..+..++.+.+.. . ..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----STPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----CSCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7789999999999998776632 12344443 21 1233333333221 1 00
Q ss_pred --------CCCCeEEEEEeCCCCCCccCHHHHHHhhcCCCCCcEEEEe
Q 045522 183 --------RLGKRFLLVLDDVWDGDYIKWKPFYHCLKNGLHESKILVT 222 (246)
Q Consensus 183 --------~~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliT 222 (246)
+..+--+||+|+++......+..+...++ ...++++|
T Consensus 181 ~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LS 225 (237)
T 2fz4_A 181 SAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLT 225 (237)
T ss_dssp HHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEE
T ss_pred HHHhhHHHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEe
Confidence 11234599999998876566777666554 22345544
No 304
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.15 E-value=0.013 Score=43.68 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 305
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.13 E-value=0.014 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+|.|+|++|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999887763
No 306
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.13 E-value=0.0034 Score=54.50 Aligned_cols=110 Identities=17% Similarity=0.101 Sum_probs=58.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 95 EEICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
..++|....+.++...+..-. .....+.|.|.+|+||+++|+.+......... -+-+++..-.. ..+...++
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~---fv~vnc~~~~~-~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRYSGRKGA---FVDLNCASIPQ-ELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC---EEEEESSSSCT-TTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHhccccCC---cEEEEcccCCh-HHHHHHhc
Confidence 357787776666655543221 11234679999999999999998873322222 23344443211 11222222
Q ss_pred HHccCCCC--CC--------CCeEEEEEeCCCCCCccCHHHHHHhhcC
Q 045522 175 EALDGHES--RL--------GKRFLLVLDDVWDGDYIKWKPFYHCLKN 212 (246)
Q Consensus 175 ~~~~~~~~--~~--------~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 212 (246)
..-.+... .. ...-.|+||++..........|...+..
T Consensus 201 g~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 201 GHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLET 248 (368)
T ss_dssp EECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred CccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHh
Confidence 22111111 00 0112599999988765556667776653
No 307
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.13 E-value=0.012 Score=52.49 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=35.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccc--cCeEEEEEecCCC-CHHHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRK--FDKILWVCVSDTF-DEFRVAKAMVE 175 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~i~~ 175 (246)
.-++|.|.+|+|||+|+..++++...... =+.++++-+++.. ...++++.+..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 45678899999999999998885443221 1356666666543 44566666654
No 308
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.10 E-value=0.015 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....|.++|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999988764
No 309
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=95.09 E-value=0.012 Score=52.91 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=43.9
Q ss_pred EEEEEEeeCCchHHHHH-HHHhcccccccccC-eEEEEEecCCCC-HHHHHHHHHHHccC----------CCC-------
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEVKRKFD-KILWVCVSDTFD-EFRVAKAMVEALDG----------HES------- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~----------~~~------- 182 (246)
.-++|.|.+|+|||+|| ..+.+.. . -+ .++++-+++..+ ..++.+.+...-.. +.+
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999995 5777733 2 33 456777776543 34444444331100 000
Q ss_pred ------------CCCCeEEEEEeCC
Q 045522 183 ------------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ------------~~~kr~LlVlDdv 195 (246)
-.++..||++||+
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 3589999999998
No 310
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.07 E-value=0.012 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 311
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.07 E-value=0.011 Score=44.22 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-|.++|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
No 312
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.07 E-value=0.013 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999998773
No 313
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.06 E-value=0.012 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
--|.++|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988763
No 314
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.04 E-value=0.036 Score=44.19 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
-..|.|.|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999998743
No 315
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.04 E-value=0.01 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999999865
No 316
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.03 E-value=0.021 Score=51.39 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=46.2
Q ss_pred EEEEEEeeCCchHHHHH-HHHhccccc----ccccC-eEEEEEecCCC-CHHHHHHHHHHHccC----------CCC---
Q 045522 123 HIISIVGMGGIGKNTLA-QLTSNHDEV----KRKFD-KILWVCVSDTF-DEFRVAKAMVEALDG----------HES--- 182 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~~~~----------~~~--- 182 (246)
.-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+++.. ...++.+.+...-.. +.+
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 46789999999999995 566663321 01233 46777777654 344555555442110 011
Q ss_pred ----------------CCCCeEEEEEeCC
Q 045522 183 ----------------RLGKRFLLVLDDV 195 (246)
Q Consensus 183 ----------------~~~kr~LlVlDdv 195 (246)
-.++..||++||+
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 4689999999998
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.02 E-value=0.011 Score=48.76 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.02 E-value=0.019 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...+++++|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 319
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.01 E-value=0.014 Score=44.06 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|.++|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999988653
No 320
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.00 E-value=0.026 Score=47.40 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++.++|++|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999887763
No 321
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.00 E-value=0.017 Score=51.20 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=21.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...++.++|++|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888763
No 322
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.99 E-value=0.04 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
+.+.|.|++|+||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 6889999999999999877654
No 323
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.99 E-value=0.011 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 324
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.98 E-value=0.013 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999865
No 325
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.96 E-value=0.024 Score=47.43 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
...++|+|+|-||+||||+|..+..... ..-..++-|++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4568899999999999999987766332 2222455566543
No 326
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.96 E-value=0.019 Score=43.31 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.++|.+|+|||||.+.+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567899999999999999988764
No 327
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.96 E-value=0.012 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
--|.++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999887654
No 328
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.95 E-value=0.016 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....|.++|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998765
No 329
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.94 E-value=0.14 Score=48.78 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.3
Q ss_pred EEEEEEeeCCchHHHHHHHHh
Q 045522 123 HIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~ 143 (246)
..+.|+|+.|.||||++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999999665553
No 330
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.94 E-value=0.014 Score=44.58 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-|.++|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 331
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.93 E-value=0.013 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999988764
No 332
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.93 E-value=0.029 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=20.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999988774
No 333
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.91 E-value=0.041 Score=47.13 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=34.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
.++.|.|.+|+||||||..++..... +-..++|++.. .+...+...++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 58899999999999999888764322 22467777654 345555555543
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.91 E-value=0.015 Score=44.52 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+.+|+|+.|.|||||+.+++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999998854
No 335
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.91 E-value=0.013 Score=43.84 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..--|.++|.+|+|||||.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999888754
No 336
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.91 E-value=0.013 Score=43.66 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.2
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888754
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.90 E-value=0.013 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
--|.++|.+|+|||||.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988754
No 338
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.90 E-value=0.025 Score=48.37 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+++|+|++|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998874
No 339
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.014 Score=46.03 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|.++|++|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999988764
No 340
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.88 E-value=0.017 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..|.|.|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999998874
No 341
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.88 E-value=0.02 Score=42.48 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||.+.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999988754
No 342
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.88 E-value=0.018 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.3
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.++|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999888654
No 343
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.88 E-value=0.014 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|.|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999764
No 344
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.86 E-value=0.016 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.3
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999998853
No 345
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.85 E-value=0.017 Score=49.74 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+|+|+|++|+|||||.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999999998875
No 346
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.85 E-value=0.014 Score=43.56 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
--|.++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999988754
No 347
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.84 E-value=0.01 Score=46.44 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...++|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988764
No 348
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.84 E-value=0.036 Score=45.90 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 105 NELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 105 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
+++.+.|............-|+|+|.+|+|||||...+...
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 34444443322112245678999999999999999998764
No 349
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.84 E-value=0.02 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.-|+++|.+|+|||||.+.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998875
No 350
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.80 E-value=0.02 Score=42.84 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
--|.++|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999998853
No 351
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.80 E-value=0.015 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.1
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.++|.+|+|||||.+.+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999988754
No 352
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.80 E-value=0.014 Score=43.46 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.1
Q ss_pred EEEEeeCCchHHHHHHHHhc
Q 045522 125 ISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~ 144 (246)
|.++|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999988864
No 353
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.79 E-value=0.025 Score=42.69 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..--|.|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 354
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.78 E-value=0.015 Score=48.90 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.5
Q ss_pred EEEEEeeCCchHHHHHHHHhc
Q 045522 124 IISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-|+|+|+.|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999765
No 355
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.78 E-value=0.03 Score=47.87 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
....+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999988764
No 356
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.78 E-value=0.02 Score=43.83 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...--|.++|.+|+|||||++.+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 33456789999999999999988764
No 357
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.77 E-value=0.019 Score=55.01 Aligned_cols=52 Identities=27% Similarity=0.230 Sum_probs=37.5
Q ss_pred CCccccccchHHHHHHHhhCCCCC-------CCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 94 EEEICGRVDEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 94 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.++.|.++..+.|.+.+...... .-.....+.++|++|+|||+||+.++..
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 356889998888888776432110 1123456889999999999999999984
No 358
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.76 E-value=0.015 Score=51.31 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 346999999999999999999876
No 359
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.75 E-value=0.013 Score=44.33 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999988754
No 360
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.74 E-value=0.017 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...++|+|+.|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998765
No 361
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.73 E-value=0.015 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 362
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.73 E-value=0.032 Score=45.02 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=18.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
-..|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999998843
No 363
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.73 E-value=0.018 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|.|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999988865
No 364
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.73 E-value=0.015 Score=43.39 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999988753
No 365
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.71 E-value=0.043 Score=50.13 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCC
Q 045522 107 LLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDT 163 (246)
Q Consensus 107 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 163 (246)
.++.|..- .+-.-++|.|..|+|||+|+..+.+.. +-+.++++-+++.
T Consensus 222 vID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER 269 (600)
T 3vr4_A 222 VIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEEC
T ss_pred hhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEeccc
Confidence 55666443 223578899999999999999988732 2356777777665
No 366
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.71 E-value=0.015 Score=44.67 Aligned_cols=24 Identities=25% Similarity=0.056 Sum_probs=20.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..--|.|+|.+|+|||||++.+.+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999987765
No 367
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.70 E-value=0.041 Score=44.37 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=51.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHHHccCCC--------------C----CC
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVEALDGHE--------------S----RL 184 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~--------------~----~~ 184 (246)
-.|.+.|.||+||||+|..+...... ..++ +..+.+....+..... .+..+.... . +.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~-V~v~d~D~q~~~~~~a--l~~gl~~~~~~~~~~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR-QGVR-VMAGVVETHGRAETEA--LLNGLPQQPLLRTEYRGMTLEEMDLDALLK 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH-TTCC-EEEEECCCTTCHHHHH--HHTTSCBCCCEEEEETTEEEEECCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH-CCCC-EEEEEeCCCCChhHHH--HhcCccccCcceeecCCcccccccHHHHHh
Confidence 44778899999999998777663322 2233 3444443322222111 112221100 0 22
Q ss_pred CCeEEEEEeCCCCCC------ccCHHHHHHhhcCCCCCcEEEEecCCh
Q 045522 185 GKRFLLVLDDVWDGD------YIKWKPFYHCLKNGLHESKILVTTRKG 226 (246)
Q Consensus 185 ~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~IliTtR~~ 226 (246)
.+.=++|+|++-+.. ...|..+...++. |..+++|+.-.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 234599999875321 1246666655543 55688887744
No 368
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.70 E-value=0.015 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=20.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..--|.|+|.+|+|||||+..+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999877654
No 369
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.69 E-value=0.016 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.-|+++|.+|+|||||.+.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988763
No 370
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.69 E-value=0.024 Score=47.66 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
+++|.+.+.. .+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---------FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 6667766632 478999999999999999998 54
No 371
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.68 E-value=0.017 Score=43.51 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
--|.|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988753
No 372
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.68 E-value=0.015 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 58999999999999999998763
No 373
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.68 E-value=0.016 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.|+|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999887654
No 374
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.68 E-value=0.017 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.1
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.++|.+|+|||||.+.+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467889999999999999988754
No 375
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.67 E-value=0.038 Score=45.13 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=25.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
++|+|.|-||+||||+|..+..... ..-..++-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCC
Confidence 5778889999999999987766332 222245555543
No 376
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.67 E-value=0.017 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
--|.++|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999998764
No 377
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.67 E-value=0.016 Score=50.14 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=31.4
Q ss_pred CCCCeEEEEEeCCCCC-CccCHHHHHHhhcCC--CCCcEEEEecCChhHHhhcC
Q 045522 183 RLGKRFLLVLDDVWDG-DYIKWKPFYHCLKNG--LHESKILVTTRKGSVTSMMG 233 (246)
Q Consensus 183 ~~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTtR~~~va~~~~ 233 (246)
+..+.-+|++|+--+. |...-..+...+..- ..|..||++|.+.+++..++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 5677889999987553 222223344444321 23677999999987766543
No 378
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.66 E-value=0.017 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999875
No 379
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.63 E-value=0.017 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999875
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.61 E-value=0.017 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999998753
No 381
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.60 E-value=0.021 Score=43.11 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999988764
No 382
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.58 E-value=0.017 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999875
No 383
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.57 E-value=0.045 Score=43.01 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=30.1
Q ss_pred EEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 124 IISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
.|.|-|.-|+||||.++.+++.. +.....++...-+......+.+..++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 46788999999999999998843 33333444444333333334444443
No 384
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.56 E-value=0.014 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999865
No 385
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.55 E-value=0.018 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999865
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.55 E-value=0.024 Score=42.70 Aligned_cols=26 Identities=23% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.++|.+|+|||||.+.+...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567889999999999999988754
No 387
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.55 E-value=0.025 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988653
No 388
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.54 E-value=0.022 Score=43.93 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999988764
No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.53 E-value=0.018 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999988763
No 390
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.53 E-value=0.022 Score=47.82 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|+|+|.+|+|||||.+.+...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34568999999999999999988764
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.53 E-value=0.013 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....|.|.|+.|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999988874
No 392
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.52 E-value=0.023 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||...+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999988743
No 393
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.52 E-value=0.023 Score=43.11 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 467889999999999999988743
No 394
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.51 E-value=0.019 Score=43.60 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=21.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.++|.+|+|||||.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3456889999999999999988754
No 395
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.48 E-value=0.019 Score=43.46 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.++|.+|+|||||...+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999888754
No 396
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.021 Score=44.09 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988754
No 397
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.45 E-value=0.058 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
-.+++|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998876
No 398
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.45 E-value=0.028 Score=43.51 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=21.5
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.|+|.+|+|||||...+...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999988654
No 399
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.44 E-value=0.02 Score=43.43 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 400
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.44 E-value=0.021 Score=44.25 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999877664
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.43 E-value=0.027 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.|+|.+|+|||||+..+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 33457889999999999999988753
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.42 E-value=0.02 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999988754
No 403
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.41 E-value=0.022 Score=44.30 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=20.2
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHh
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTS 143 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~ 143 (246)
....-|.|+|.+|+|||||.+.+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999885
No 404
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.41 E-value=0.031 Score=42.48 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...--|.|+|.+|+|||||...+...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34457889999999999999998754
No 405
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.39 E-value=0.024 Score=47.73 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 119 QKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 119 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 466789999999999999999988764
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.39 E-value=0.021 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||++.+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3467889999999999999998764
No 407
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.39 E-value=0.028 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999888754
No 408
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.39 E-value=0.049 Score=43.81 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.....|.+.|+.|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998843
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.38 E-value=0.058 Score=43.02 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=32.9
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHHH
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMVE 175 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 175 (246)
..|.+.|+.|+||||+++.+...... ..+..+.+..-.......+.++.++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 47889999999999999999884432 23333444443333334455555554
No 410
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.38 E-value=0.021 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 411
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.36 E-value=0.026 Score=44.94 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.|+|.+|+|||||+..+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999988764
No 412
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.36 E-value=0.022 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999875
No 413
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.36 E-value=0.042 Score=53.30 Aligned_cols=21 Identities=29% Similarity=0.153 Sum_probs=19.4
Q ss_pred eEEEEEEeeCCchHHHHHHHH
Q 045522 122 LHIISIVGMGGIGKNTLAQLT 142 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v 142 (246)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 414
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.36 E-value=0.027 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.9
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|+|+|.+|+|||||...+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34567899999999999999998764
No 415
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.36 E-value=0.024 Score=43.20 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998754
No 416
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.02 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..--|.++|.+|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988654
No 417
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.35 E-value=0.021 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 418
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.35 E-value=0.021 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhccc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..-|.++|.+|+|||||...+....
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999987643
No 419
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.33 E-value=0.046 Score=43.75 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=26.6
Q ss_pred EEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCH
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDE 166 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 166 (246)
|++.|-||+||||+|..+..... ..-..++-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCcCh
Confidence 56689999999999988776432 22245666665543443
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.33 E-value=0.054 Score=43.95 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=27.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV 160 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 160 (246)
...|.|.|+.|+||||+++.+...... ..+..+....-
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~re 64 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTRE 64 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecC
Confidence 368999999999999999999884432 23453444443
No 421
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.022 Score=43.87 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999988764
No 422
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.33 E-value=0.029 Score=43.55 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=21.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....-|.|+|.+|+|||||...+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567889999999999999988754
No 423
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.31 E-value=0.031 Score=42.98 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456889999999999999988753
No 424
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.31 E-value=0.029 Score=43.16 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457889999999999999988764
No 425
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.30 E-value=0.044 Score=45.01 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.....|.++|.+|+|||||...+....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999987643
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.03 Score=43.84 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||++.+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3467889999999999999987653
No 427
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.29 E-value=0.018 Score=45.51 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988765
No 428
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.28 E-value=0.03 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.27 E-value=0.025 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 430
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.26 E-value=0.022 Score=43.68 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999988764
No 431
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.26 E-value=0.024 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=20.5
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 432
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.23 E-value=0.051 Score=45.00 Aligned_cols=37 Identities=30% Similarity=0.272 Sum_probs=25.0
Q ss_pred EEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
++|+|.|-||+||||+|..+...... .-..++-|++.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~--~G~rVlliD~D 39 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 67888999999999999877663321 11244555543
No 433
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.23 E-value=0.032 Score=42.77 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998765
No 434
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.22 E-value=0.039 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.5
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...++.++|++|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999887763
No 435
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.21 E-value=0.024 Score=44.10 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.1
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988754
No 436
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.21 E-value=0.026 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.6
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..--|.++|.+|+|||||...+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999988754
No 437
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.20 E-value=0.023 Score=43.62 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999988764
No 438
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.20 E-value=0.022 Score=46.06 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...++|.|++|+||||+|+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988774
No 439
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.19 E-value=0.023 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=20.3
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....|.|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999988754
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.18 E-value=0.023 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999988754
No 441
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.18 E-value=0.024 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 442
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.18 E-value=0.05 Score=44.52 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.....|+++|.+|+|||||...+....
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999987643
No 443
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.17 E-value=0.023 Score=43.80 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..--|.++|.+|+|||||...+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999988764
No 444
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.038 Score=42.24 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||.+.+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 467889999999999999988753
No 445
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.13 E-value=0.025 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-.++.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 478999999999999999999873
No 446
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.13 E-value=0.022 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|+|+.|.|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999998764
No 447
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.025 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999988764
No 448
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.12 E-value=0.026 Score=48.51 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|+|||||.+.+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998774
No 449
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.10 E-value=0.023 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999988754
No 450
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.10 E-value=0.037 Score=46.46 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=26.6
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 104 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 104 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
++++...+.. .+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~g---------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC---------CeEEEECCCCCcHHHHHHHhccc
Confidence 5666666632 47899999999999999999873
No 451
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.09 E-value=0.023 Score=43.60 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.-|.++|.+|+|||||.+.+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999887643
No 452
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.08 E-value=0.032 Score=50.49 Aligned_cols=47 Identities=11% Similarity=-0.112 Sum_probs=30.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 96 EICGRVDEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..+.|.+..+.+.+.. ... .....+|.+.|++|+||||+|+.+....
T Consensus 373 ~~f~rpeV~~vLr~~~-~~~---~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESN-PPR---PKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHS-CCG---GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhc-ccc---cccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3444544444444433 211 1345789999999999999999998843
No 453
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.08 E-value=0.026 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998874
No 454
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.07 E-value=0.061 Score=44.94 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 55778999999999999999998764
No 455
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.05 E-value=0.027 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
.+++|+|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 478999999999999999998743
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.04 E-value=0.036 Score=42.87 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998653
No 457
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.03 E-value=0.058 Score=50.17 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=31.1
Q ss_pred EEEEEeeCCchHHHHH-HHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 124 IISIVGMGGIGKNTLA-QLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
+..|+||||+|||+.+ ..++. .++. ...+.++...+..+..+++.+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHHHHH
Confidence 6789999999999654 44444 2222 2467777777666666666654
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.029 Score=43.16 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||++.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988764
No 459
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.02 E-value=0.024 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||.+.+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988754
No 460
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.00 E-value=0.026 Score=44.53 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.2
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhccc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35678899999999999999988753
No 461
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.028 Score=43.94 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.-|.++|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 56889999999999999988764
No 462
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.00 E-value=0.027 Score=45.14 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=26.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
-.++.|.|.+|+|||+||..++.+. ....-..+++++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc
Confidence 4688999999999999997765421 22223456666654
No 463
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.00 E-value=0.091 Score=47.25 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=32.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHH
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKA 172 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 172 (246)
-.++.|.|.+|+||||||..++.+...+ +-..++|++... +..++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r 289 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAED 289 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHH
Confidence 4688999999999999998887643222 123678887644 33444443
No 464
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.00 E-value=0.051 Score=48.11 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=32.6
Q ss_pred ccccchHHHHHHHhhCCCCC-----CCCCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 98 CGRVDEKNELLSKLLCESSE-----QQKGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 98 vGr~~~~~~l~~~L~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.|.++-++.+.+.+...... ......-++|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 34556666666666432100 1234568999999999999999998765
No 465
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.99 E-value=0.054 Score=42.06 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=24.4
Q ss_pred EEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCC
Q 045522 125 ISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFD 165 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 165 (246)
+.|+|.+|+|||++|..+... -..++++.-...++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~------~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD------APQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS------CSSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc------CCCeEEEecCCCCC
Confidence 679999999999999998863 12355665544433
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.96 E-value=0.03 Score=43.63 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.1
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||+..+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3467889999999999999988654
No 467
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.94 E-value=0.037 Score=42.43 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=21.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.++|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999988653
No 468
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.91 E-value=0.028 Score=43.80 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999988754
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.90 E-value=0.028 Score=43.08 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.4
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..-|.++|.+|+|||||...+...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998653
No 470
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.90 E-value=0.026 Score=49.94 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-++|+|+.|+|||||.+.++.-
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999998763
No 471
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.90 E-value=0.09 Score=46.58 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=33.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHHHHHHHH
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFRVAKAMV 174 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 174 (246)
-.++.|.|.+|+||||||..++...... .-..++|++... +...+...++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~ 249 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMM 249 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHH
Confidence 4689999999999999998887643221 123677877643 3444444443
No 472
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.89 E-value=0.049 Score=42.31 Aligned_cols=40 Identities=25% Similarity=0.199 Sum_probs=26.0
Q ss_pred EEEEEE-eeCCchHHHHHHHHhcccccccccCeEEEEEecCCC
Q 045522 123 HIISIV-GMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTF 164 (246)
Q Consensus 123 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 164 (246)
++|+++ +-||+||||+|..+..... ..-..++-++.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCC
Confidence 578887 5699999999987766332 222345556654433
No 473
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.88 E-value=0.032 Score=43.40 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.-|.|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988764
No 474
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.87 E-value=0.025 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..++|+|+.|.|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998774
No 475
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.86 E-value=0.021 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|++|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48999999999999999998863
No 476
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.83 E-value=0.036 Score=42.95 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.8
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467889999999999999988654
No 477
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.82 E-value=0.03 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEEeeCCchHHHHHHHHhcc
Q 045522 124 IISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 124 vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-|.|+|.+|+|||+|+..+..+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999887653
No 478
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.82 E-value=0.061 Score=46.51 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCeEEEEEEe-eCCchHHHHHHHHhcccccccccCeEEEEEec
Q 045522 119 QKGLHIISIVG-MGGIGKNTLAQLTSNHDEVKRKFDKILWVCVS 161 (246)
Q Consensus 119 ~~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 161 (246)
....++|+++| -||+||||+|..+.... ...-..++-+++.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~L--a~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAH--ANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHH--HHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHH--HhCCCCEEEEECC
Confidence 35678999986 79999999998776632 2222356667744
No 479
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.81 E-value=0.092 Score=41.89 Aligned_cols=100 Identities=15% Similarity=0.029 Sum_probs=47.6
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEe-cCCCCHHHHHHHHHHHcc---CCC--C----CCCCeEEEE
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCV-SDTFDEFRVAKAMVEALD---GHE--S----RLGKRFLLV 191 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~~~---~~~--~----~~~kr~LlV 191 (246)
-.+..++|+.|.||||.+.........+ .....++-.. ...+....+...+-.... ... . +.++--+|+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvVi 106 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIA 106 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEE
Confidence 4688899999999999886666533222 2223332211 111222222222200000 000 0 222334999
Q ss_pred EeCCCCCCccCHHHHHHhhcCCCCCcEEEEecCC
Q 045522 192 LDDVWDGDYIKWKPFYHCLKNGLHESKILVTTRK 225 (246)
Q Consensus 192 lDdv~~~~~~~~~~l~~~l~~~~~gs~IliTtR~ 225 (246)
+|.+...+.+..+.+ ..+.+ .|..||+|-++
T Consensus 107 IDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 107 IDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLD 137 (214)
T ss_dssp ECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECS
T ss_pred EECcccCCHHHHHHH-HHHhh--CCCEEEEEecc
Confidence 999976543334333 33332 26789999984
No 480
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.81 E-value=0.033 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998763
No 481
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.77 E-value=0.019 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=10.8
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999887654
No 482
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.77 E-value=0.034 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.++|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999887754
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.75 E-value=0.073 Score=42.01 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=27.8
Q ss_pred EEEEE-eeCCchHHHHHHHHhcccccccccCeEEEEEecCCCCHHH
Q 045522 124 IISIV-GMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSDTFDEFR 168 (246)
Q Consensus 124 vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 168 (246)
+|+++ +-||+||||+|..+..... ..- .++-++.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la--~~g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLA--LQG-ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--TTS-CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH--hcC-CEEEEECCCCCCHHH
Confidence 56665 6799999999988876332 222 677777765544443
No 484
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.72 E-value=0.074 Score=45.43 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.0
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+++.+.|-||+||||+|..+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 357888889999999999977665
No 485
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.68 E-value=0.054 Score=42.29 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.9
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..--|.|+|.+|+|||||+..+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999888754
No 486
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.68 E-value=0.033 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.|+|.+|+|||||.+.+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 487
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.028 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred EEEEEEeeCCchHHHHHHHHhcc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.+++|+|+.|+|||||++.+..-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 68999999999999999988663
No 488
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.68 E-value=0.038 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.5
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
..+|.|.|+.|+||||+++.+...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 358999999999999999998873
No 489
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.68 E-value=0.045 Score=44.53 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.3
Q ss_pred CeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 121 GLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 121 ~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999988654
No 490
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.67 E-value=0.03 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.9
Q ss_pred EEEEeeCCchHHHHHHHHhcc
Q 045522 125 ISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 125 i~I~G~gGiGKTtLa~~v~~~ 145 (246)
|+|+|+.|+|||||++.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999998764
No 491
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.63 E-value=0.071 Score=45.83 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.6
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
...+++.+.|-||+||||+|..+..
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 3457888999999999999976654
No 492
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.61 E-value=0.075 Score=42.50 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=25.7
Q ss_pred CeEEEEEEe-eCCchHHHHHHHHhcccccccc-cCeEEEEEec
Q 045522 121 GLHIISIVG-MGGIGKNTLAQLTSNHDEVKRK-FDKILWVCVS 161 (246)
Q Consensus 121 ~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~ 161 (246)
..++|++++ -||+||||+|..+.... ... -..++-|++.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l--a~~~g~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL--SQEPDIHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH--TTSTTCCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH--HhCcCCCEEEEECC
Confidence 357888886 59999999998776632 222 2345555543
No 493
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.57 E-value=0.034 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.--|.|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999988754
No 494
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.57 E-value=0.046 Score=45.96 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCeEEEEEEeeCCchHHHHHHHHhcc
Q 045522 120 KGLHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 120 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
.....|+|+|.+|+|||||...+...
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999988764
No 495
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.54 E-value=0.038 Score=49.09 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.3
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcc
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNH 145 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~ 145 (246)
-..++|+|+.|+|||||++.+..-
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999998764
No 496
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.53 E-value=0.049 Score=48.46 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=28.9
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
-.++.|.|.+|+||||||..++...... .-..++|++...
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 3689999999999999998887743221 123677877543
No 497
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.43 E-value=0.053 Score=41.96 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
..+.|.|++|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999988776
No 498
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.41 E-value=0.051 Score=40.62 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.3
Q ss_pred EEEEEEeeCCchHHHHHHHHhc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSN 144 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~ 144 (246)
.+..|+|+.|.|||||..+++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999988753
No 499
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.35 E-value=0.063 Score=47.70 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=29.0
Q ss_pred eEEEEEEeeCCchHHHHHHHHhcccccccccCeEEEEEecC
Q 045522 122 LHIISIVGMGGIGKNTLAQLTSNHDEVKRKFDKILWVCVSD 162 (246)
Q Consensus 122 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 162 (246)
-.++.|.|.+|+||||||..++.+...+ -..++|++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM 235 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 4689999999999999998887644332 24677877544
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.34 E-value=0.071 Score=42.17 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEEEeeCCchHHHHHHHHhccc
Q 045522 123 HIISIVGMGGIGKNTLAQLTSNHD 146 (246)
Q Consensus 123 ~vi~I~G~gGiGKTtLa~~v~~~~ 146 (246)
..|+|-|.-|+||||+++.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999998843
Done!