BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045523
         (634 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
           The Transcription Regulator Ntrc1 From Aquifex Aeolicus
 pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
           The Transcription Regulator Ntrc1 From Aquifex Aeolicus
          Length = 150

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 327 SIEAIESGSMDFMD---LLEQIDLQIAKAKEEASSRKE 361
           ++EA++ G+ DF+    +LE+I+L I KA E    RKE
Sbjct: 87  AVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKE 124


>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
           Inactive State
 pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
           Inactive State
          Length = 387

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 327 SIEAIESGSMDFMD---LLEQIDLQIAKAKEEASSRKE 361
           ++EA++ G+ DF+    +LE+I+L I KA E    RKE
Sbjct: 87  AVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKE 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,052,636
Number of Sequences: 62578
Number of extensions: 585143
Number of successful extensions: 1298
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1286
Number of HSP's gapped (non-prelim): 19
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)