Query 045523
Match_columns 634
No_of_seqs 250 out of 480
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 1.3E-92 2.9E-97 789.3 56.9 570 3-610 16-660 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 6.9E-67 1.5E-71 595.5 8.7 493 24-539 2-567 (619)
3 PF03999 MAP65_ASE1: Microtubu 99.9 4E-26 8.6E-31 261.2 11.4 391 5-431 37-470 (619)
4 KOG4302 Microtubule-associated 99.9 1.4E-20 3.1E-25 211.9 43.8 286 62-369 21-317 (660)
5 KOG0161 Myosin class II heavy 95.4 14 0.00031 48.5 35.4 148 36-185 1191-1342(1930)
6 TIGR03185 DNA_S_dndD DNA sulfu 95.2 9 0.00019 45.2 36.3 206 84-320 205-418 (650)
7 PHA02562 46 endonuclease subun 95.2 6.7 0.00014 44.9 25.1 96 20-125 148-243 (562)
8 KOG0996 Structural maintenance 95.0 13 0.00029 46.0 30.8 104 206-319 933-1038(1293)
9 KOG4674 Uncharacterized conser 94.1 26 0.00057 45.7 37.1 273 5-327 543-832 (1822)
10 PRK04778 septation ring format 93.9 16 0.00034 42.5 26.7 68 3-73 62-130 (569)
11 TIGR02169 SMC_prok_A chromosom 93.2 29 0.00062 43.1 32.5 36 145-180 799-834 (1164)
12 PRK02224 chromosome segregatio 92.9 28 0.00061 42.3 35.8 21 342-362 484-504 (880)
13 TIGR03185 DNA_S_dndD DNA sulfu 92.6 26 0.00057 41.3 34.7 39 278-316 480-518 (650)
14 TIGR00606 rad50 rad50. This fa 91.8 49 0.0011 42.5 33.6 204 144-373 528-742 (1311)
15 PLN03188 kinesin-12 family pro 91.7 35 0.00075 43.0 23.5 34 385-418 1154-1189(1320)
16 KOG0161 Myosin class II heavy 91.7 58 0.0012 43.2 29.8 99 26-125 1041-1141(1930)
17 PF07888 CALCOCO1: Calcium bin 91.6 27 0.00058 40.5 21.3 41 85-125 189-229 (546)
18 PF12128 DUF3584: Protein of u 90.7 59 0.0013 41.4 30.6 44 138-181 765-811 (1201)
19 PF10146 zf-C4H2: Zinc finger- 90.0 12 0.00026 38.6 15.4 108 35-186 2-110 (230)
20 PF13514 AAA_27: AAA domain 90.0 63 0.0014 40.7 34.5 90 39-128 685-776 (1111)
21 TIGR02169 SMC_prok_A chromosom 90.0 59 0.0013 40.4 28.8 30 343-372 954-984 (1164)
22 PRK11637 AmiB activator; Provi 89.5 40 0.00086 37.7 24.2 10 499-508 328-337 (428)
23 PRK04863 mukB cell division pr 89.4 81 0.0017 41.1 39.2 35 392-426 630-665 (1486)
24 KOG0250 DNA repair protein RAD 89.1 64 0.0014 40.1 22.5 32 138-169 331-362 (1074)
25 KOG0933 Structural maintenance 89.1 66 0.0014 39.7 23.5 72 205-294 903-974 (1174)
26 KOG1029 Endocytic adaptor prot 87.9 27 0.00059 41.7 17.6 72 46-122 435-506 (1118)
27 PRK11637 AmiB activator; Provi 87.6 52 0.0011 36.7 21.9 87 84-172 43-131 (428)
28 PF00038 Filament: Intermediat 87.4 42 0.00092 35.5 30.9 122 35-181 12-133 (312)
29 COG5185 HEC1 Protein involved 87.1 60 0.0013 36.9 23.9 47 277-323 532-581 (622)
30 PF15070 GOLGA2L5: Putative go 86.5 77 0.0017 37.5 25.8 110 41-167 36-145 (617)
31 PF12128 DUF3584: Protein of u 85.7 1.2E+02 0.0025 38.8 33.4 46 202-247 765-813 (1201)
32 cd07664 BAR_SNX2 The Bin/Amphi 85.4 49 0.0011 34.3 22.3 40 277-316 183-229 (234)
33 TIGR02168 SMC_prok_B chromosom 85.1 1.1E+02 0.0023 38.0 37.6 23 529-553 1117-1139(1179)
34 PF12252 SidE: Dot/Icm substra 84.5 45 0.00098 41.2 17.5 100 202-318 1233-1344(1439)
35 PF06160 EzrA: Septation ring 83.4 97 0.0021 36.1 25.3 68 3-73 58-126 (560)
36 COG1196 Smc Chromosome segrega 83.4 1.4E+02 0.003 37.9 36.6 32 37-68 705-736 (1163)
37 TIGR03007 pepcterm_ChnLen poly 83.0 89 0.0019 35.4 23.1 138 95-241 204-343 (498)
38 PF12252 SidE: Dot/Icm substra 80.2 1.7E+02 0.0036 36.7 29.1 140 204-360 1175-1318(1439)
39 PF15254 CCDC14: Coiled-coil d 80.0 1.1E+02 0.0024 36.8 18.2 221 5-288 341-585 (861)
40 cd09234 V_HD-PTP_like Protein- 79.9 95 0.0021 33.7 30.0 137 36-175 74-219 (337)
41 PRK04863 mukB cell division pr 79.8 2.1E+02 0.0045 37.5 40.7 73 341-415 587-661 (1486)
42 KOG0933 Structural maintenance 79.7 1.7E+02 0.0037 36.4 36.1 111 2-125 668-778 (1174)
43 PF10498 IFT57: Intra-flagella 79.3 35 0.00076 37.6 13.5 77 38-122 217-293 (359)
44 PRK09039 hypothetical protein; 79.1 1E+02 0.0023 33.6 18.5 131 83-221 111-251 (343)
45 PF15066 CAGE1: Cancer-associa 79.0 55 0.0012 37.1 14.7 149 25-175 330-502 (527)
46 KOG0977 Nuclear envelope prote 78.7 1.4E+02 0.003 34.8 20.5 42 85-126 173-214 (546)
47 PHA02562 46 endonuclease subun 76.9 1.4E+02 0.0031 34.1 24.9 28 143-170 298-325 (562)
48 KOG0994 Extracellular matrix g 76.0 2.3E+02 0.005 36.0 23.2 39 207-245 1590-1628(1758)
49 PF06705 SF-assemblin: SF-asse 75.7 1E+02 0.0022 31.8 17.4 81 143-240 152-233 (247)
50 PF13514 AAA_27: AAA domain 74.4 2.5E+02 0.0053 35.6 37.7 259 37-322 560-844 (1111)
51 PF10168 Nup88: Nuclear pore c 74.3 2.1E+02 0.0045 34.6 22.2 118 104-238 598-715 (717)
52 TIGR00634 recN DNA repair prot 74.2 1.8E+02 0.0039 33.8 26.6 34 89-122 169-202 (563)
53 TIGR02168 SMC_prok_B chromosom 74.1 2.3E+02 0.005 35.1 33.3 31 40-70 683-713 (1179)
54 PF08317 Spc7: Spc7 kinetochor 73.6 1.4E+02 0.003 32.3 22.2 79 49-127 76-163 (325)
55 cd09236 V_AnPalA_UmRIM20_like 73.6 1.4E+02 0.0031 32.5 37.6 196 35-239 7-223 (353)
56 KOG0612 Rho-associated, coiled 73.5 2.6E+02 0.0057 35.5 34.9 39 205-243 634-673 (1317)
57 KOG4643 Uncharacterized coiled 73.4 2.5E+02 0.0053 35.1 32.5 82 37-121 260-341 (1195)
58 KOG0995 Centromere-associated 73.2 1.9E+02 0.0041 33.7 28.0 73 51-125 231-310 (581)
59 TIGR03007 pepcterm_ChnLen poly 73.0 1.7E+02 0.0037 33.1 23.1 141 41-181 204-347 (498)
60 PF00038 Filament: Intermediat 72.6 1.3E+02 0.0029 31.7 24.0 77 37-118 57-133 (312)
61 KOG4674 Uncharacterized conser 71.7 3.5E+02 0.0075 36.1 38.1 141 33-185 695-839 (1822)
62 KOG0977 Nuclear envelope prote 71.1 2.1E+02 0.0046 33.4 27.2 136 90-238 94-231 (546)
63 COG1340 Uncharacterized archae 70.0 1.6E+02 0.0035 31.6 25.9 122 39-165 18-152 (294)
64 PF10239 DUF2465: Protein of u 69.6 1.4E+02 0.0031 32.3 15.0 137 4-169 61-213 (318)
65 smart00787 Spc7 Spc7 kinetocho 69.4 1.7E+02 0.0037 31.6 19.1 165 20-223 108-286 (312)
66 KOG1029 Endocytic adaptor prot 69.1 2.7E+02 0.0059 33.8 25.9 29 100-128 435-463 (1118)
67 COG1196 Smc Chromosome segrega 68.6 3.3E+02 0.0072 34.7 37.8 18 344-361 946-963 (1163)
68 PF03915 AIP3: Actin interacti 68.0 1.7E+02 0.0037 33.1 15.5 171 143-369 150-321 (424)
69 COG4942 Membrane-bound metallo 67.8 2.2E+02 0.0047 32.2 22.0 85 27-117 39-123 (420)
70 COG4477 EzrA Negative regulato 67.2 2.5E+02 0.0054 32.7 26.6 242 6-258 169-452 (570)
71 PRK10869 recombination and rep 67.2 2.5E+02 0.0055 32.7 27.9 35 88-122 164-198 (553)
72 KOG0996 Structural maintenance 66.8 3.6E+02 0.0077 34.3 35.0 35 148-182 349-383 (1293)
73 PF10146 zf-C4H2: Zinc finger- 65.5 1.7E+02 0.0036 30.4 13.9 34 208-241 32-65 (230)
74 TIGR00606 rad50 rad50. This fa 64.9 4.1E+02 0.0089 34.4 37.2 67 52-121 796-862 (1311)
75 PF07106 TBPIP: Tat binding pr 64.8 1.2E+02 0.0027 29.3 12.3 135 50-231 32-168 (169)
76 COG3883 Uncharacterized protei 64.7 2E+02 0.0043 30.6 18.1 146 85-241 28-181 (265)
77 KOG0964 Structural maintenance 64.7 3.6E+02 0.0079 33.7 30.0 77 282-369 906-982 (1200)
78 COG4026 Uncharacterized protei 64.0 70 0.0015 33.0 10.4 46 207-252 169-214 (290)
79 KOG0964 Structural maintenance 63.9 3.7E+02 0.0081 33.5 29.5 184 209-416 280-481 (1200)
80 KOG0612 Rho-associated, coiled 63.6 4.1E+02 0.0089 33.9 31.0 38 277-314 636-673 (1317)
81 PRK03918 chromosome segregatio 63.4 3.4E+02 0.0074 33.0 39.4 45 20-66 143-187 (880)
82 COG4026 Uncharacterized protei 62.3 1.4E+02 0.003 31.0 12.1 94 31-125 74-172 (290)
83 PRK09039 hypothetical protein; 62.1 2.4E+02 0.0053 30.8 19.3 104 51-180 49-152 (343)
84 KOG0976 Rho/Rac1-interacting s 61.8 3.7E+02 0.0081 32.8 34.6 92 26-126 81-172 (1265)
85 PF05667 DUF812: Protein of un 60.9 3.4E+02 0.0074 32.1 20.3 140 85-235 423-574 (594)
86 KOG4360 Uncharacterized coiled 59.9 2.4E+02 0.0053 32.5 14.6 90 207-314 211-303 (596)
87 cd08915 V_Alix_like Protein-in 59.9 2.5E+02 0.0055 30.3 30.6 134 38-175 74-221 (342)
88 PF10168 Nup88: Nuclear pore c 59.2 4E+02 0.0086 32.3 19.7 33 140-172 532-564 (717)
89 PF13543 KSR1-SAM: SAM like do 58.7 79 0.0017 30.0 9.2 113 140-260 9-126 (129)
90 PF15066 CAGE1: Cancer-associa 57.7 3.4E+02 0.0074 31.1 18.8 129 149-296 343-471 (527)
91 PF07106 TBPIP: Tat binding pr 56.6 1.9E+02 0.0042 27.9 12.5 44 139-182 67-110 (169)
92 PF05557 MAD: Mitotic checkpoi 53.7 1.7E+02 0.0037 35.1 13.3 43 278-321 606-649 (722)
93 COG4942 Membrane-bound metallo 53.5 3.8E+02 0.0082 30.3 20.9 85 88-172 38-122 (420)
94 PF09726 Macoilin: Transmembra 53.3 2.5E+02 0.0053 33.9 14.3 118 34-181 538-659 (697)
95 PF12325 TMF_TATA_bd: TATA ele 53.1 1.9E+02 0.004 27.1 10.6 39 28-67 25-63 (120)
96 COG5293 Predicted ATPase [Gene 52.7 2.8E+02 0.0062 31.7 13.5 58 7-72 300-359 (591)
97 PF10174 Cast: RIM-binding pro 48.8 5.9E+02 0.013 31.2 34.8 315 8-404 252-591 (775)
98 cd07598 BAR_FAM92 The Bin/Amph 48.8 3.1E+02 0.0067 28.0 18.2 41 277-317 152-199 (211)
99 PF08614 ATG16: Autophagy prot 48.4 2.4E+02 0.0053 28.0 11.5 84 84-181 70-153 (194)
100 KOG0982 Centrosomal protein Nu 48.2 4.6E+02 0.01 29.8 15.3 74 142-223 337-418 (502)
101 PF11995 DUF3490: Domain of un 48.1 16 0.00034 35.6 2.8 27 303-329 3-29 (161)
102 KOG0995 Centromere-associated 48.0 5.2E+02 0.011 30.3 33.8 41 207-247 452-492 (581)
103 PRK02224 chromosome segregatio 47.4 6.1E+02 0.013 30.9 40.7 68 50-122 379-446 (880)
104 PF05557 MAD: Mitotic checkpoi 45.4 3.1E+02 0.0067 32.9 13.8 138 36-183 505-646 (722)
105 cd09234 V_HD-PTP_like Protein- 45.3 4.3E+02 0.0094 28.6 36.7 192 35-239 7-219 (337)
106 PF14643 DUF4455: Domain of un 44.0 5.4E+02 0.012 29.4 38.6 248 25-316 10-280 (473)
107 PRK03918 chromosome segregatio 44.0 6.7E+02 0.015 30.5 37.8 31 91-121 455-485 (880)
108 KOG0250 DNA repair protein RAD 43.4 7.9E+02 0.017 31.1 22.8 36 144-179 288-323 (1074)
109 KOG2398 Predicted proline-seri 43.3 6.4E+02 0.014 30.0 16.4 48 205-252 6-59 (611)
110 smart00806 AIP3 Actin interact 43.0 5.5E+02 0.012 29.1 27.5 171 143-369 154-325 (426)
111 PF14662 CCDC155: Coiled-coil 42.9 3.7E+02 0.0081 27.2 16.9 80 39-127 27-106 (193)
112 KOG2196 Nuclear porin [Nuclear 42.7 4.3E+02 0.0092 27.8 15.8 47 25-72 105-151 (254)
113 KOG4593 Mitotic checkpoint pro 42.1 6.9E+02 0.015 30.1 25.0 43 138-180 173-215 (716)
114 PF08606 Prp19: Prp19/Pso4-lik 41.9 1.6E+02 0.0034 25.1 7.4 63 3-66 6-68 (70)
115 PF11995 DUF3490: Domain of un 41.6 15 0.00032 35.8 1.5 93 232-330 3-120 (161)
116 KOG3091 Nuclear pore complex, 41.4 2.9E+02 0.0063 31.8 11.7 69 34-103 355-426 (508)
117 COG4913 Uncharacterized protei 41.2 4E+02 0.0087 32.3 12.9 149 6-174 734-886 (1104)
118 PF04912 Dynamitin: Dynamitin 40.9 5.4E+02 0.012 28.4 22.7 55 162-222 206-260 (388)
119 COG1579 Zn-ribbon protein, pos 40.3 4.6E+02 0.0099 27.5 17.8 86 39-127 43-128 (239)
120 KOG0971 Microtubule-associated 39.7 8.5E+02 0.018 30.4 30.3 76 278-358 403-480 (1243)
121 PF04048 Sec8_exocyst: Sec8 ex 38.8 37 0.0008 32.2 3.8 38 208-245 79-116 (142)
122 KOG4603 TBP-1 interacting prot 38.4 4.2E+02 0.0091 26.5 16.3 39 36-74 81-119 (201)
123 PF02183 HALZ: Homeobox associ 38.2 1.5E+02 0.0032 22.9 6.3 43 30-73 2-44 (45)
124 PF10212 TTKRSYEDQ: Predicted 38.0 2.6E+02 0.0057 32.4 10.8 71 33-112 441-511 (518)
125 COG0419 SbcC ATPase involved i 37.9 8.7E+02 0.019 30.0 31.9 309 7-374 381-750 (908)
126 PF02994 Transposase_22: L1 tr 37.8 87 0.0019 34.6 7.0 38 208-245 151-188 (370)
127 PF10212 TTKRSYEDQ: Predicted 37.0 7.3E+02 0.016 28.9 14.5 101 35-171 414-514 (518)
128 COG3096 MukB Uncharacterized p 36.8 8.8E+02 0.019 29.7 26.6 332 36-388 895-1258(1480)
129 KOG4398 Predicted coiled-coil 36.6 1.6E+02 0.0035 31.4 8.2 58 236-303 33-90 (359)
130 PRK04778 septation ring format 35.9 7.7E+02 0.017 28.8 29.2 251 39-303 210-497 (569)
131 PF15070 GOLGA2L5: Putative go 35.8 8.3E+02 0.018 29.1 35.3 105 53-170 2-106 (617)
132 TIGR02833 spore_III_AB stage I 35.6 3.2E+02 0.007 26.7 9.9 95 158-265 21-120 (170)
133 PF14992 TMCO5: TMCO5 family 35.3 4.9E+02 0.011 27.9 11.7 20 48-67 77-96 (280)
134 PF09730 BicD: Microtubule-ass 34.8 2.2E+02 0.0048 34.4 10.0 148 12-182 257-436 (717)
135 PRK05771 V-type ATP synthase s 34.3 4E+02 0.0086 31.6 12.2 192 157-381 45-264 (646)
136 PF11629 Mst1_SARAH: C termina 33.9 52 0.0011 26.0 3.2 25 343-367 22-47 (49)
137 COG1579 Zn-ribbon protein, pos 33.5 5.8E+02 0.013 26.7 17.2 42 140-181 85-126 (239)
138 KOG0243 Kinesin-like protein [ 33.0 1.1E+03 0.024 29.8 23.6 44 85-128 473-516 (1041)
139 cd09236 V_AnPalA_UmRIM20_like 33.0 6.8E+02 0.015 27.3 31.0 139 37-175 74-223 (353)
140 PF08614 ATG16: Autophagy prot 32.1 5.2E+02 0.011 25.7 11.9 118 143-310 73-190 (194)
141 TIGR00634 recN DNA repair prot 32.1 8.6E+02 0.019 28.2 27.7 116 106-241 219-334 (563)
142 PF13949 ALIX_LYPXL_bnd: ALIX 31.7 6.1E+02 0.013 26.4 31.1 67 169-238 105-171 (296)
143 cd09237 V_ScBro1_like Protein- 31.1 7.2E+02 0.016 27.1 36.5 193 35-239 7-229 (356)
144 PF07083 DUF1351: Protein of u 30.9 5.9E+02 0.013 25.9 18.1 169 57-250 17-186 (215)
145 PF00435 Spectrin: Spectrin re 30.7 3.1E+02 0.0067 22.7 11.2 75 140-232 30-104 (105)
146 KOG2891 Surface glycoprotein [ 30.4 2.8E+02 0.0061 29.6 8.8 39 385-423 377-421 (445)
147 TIGR02231 conserved hypothetic 30.4 4E+02 0.0087 30.6 11.1 86 40-126 77-169 (525)
148 KOG0971 Microtubule-associated 30.3 1.2E+03 0.026 29.3 30.9 24 45-68 266-289 (1243)
149 PF10267 Tmemb_cc2: Predicted 30.3 4.2E+02 0.009 29.8 10.7 57 282-353 262-318 (395)
150 cd00176 SPEC Spectrin repeats, 30.2 4.7E+02 0.01 24.6 19.8 87 142-246 31-117 (213)
151 PRK08307 stage III sporulation 29.8 5.4E+02 0.012 25.2 11.0 95 158-265 22-121 (171)
152 PF10267 Tmemb_cc2: Predicted 29.7 6.8E+02 0.015 28.2 12.2 52 220-291 267-318 (395)
153 COG0497 RecN ATPase involved i 29.2 1E+03 0.022 28.1 27.4 36 87-122 163-198 (557)
154 PF10498 IFT57: Intra-flagella 29.2 5E+02 0.011 28.7 11.1 113 38-159 231-343 (359)
155 PF06818 Fez1: Fez1; InterPro 29.0 6.1E+02 0.013 25.9 10.7 90 92-182 14-104 (202)
156 KOG0018 Structural maintenance 29.0 1.3E+03 0.028 29.3 29.7 90 297-400 881-976 (1141)
157 TIGR00444 mazG MazG family pro 28.6 3.2E+02 0.0068 28.7 9.0 85 143-244 154-246 (248)
158 cd08915 V_Alix_like Protein-in 28.5 7.7E+02 0.017 26.5 37.0 196 35-239 7-221 (342)
159 KOG0517 Beta-spectrin [Cytoske 28.3 1.7E+03 0.036 30.4 38.6 195 5-237 1348-1542(2473)
160 KOG4603 TBP-1 interacting prot 28.3 6.2E+02 0.013 25.4 15.2 45 204-248 75-119 (201)
161 PF04849 HAP1_N: HAP1 N-termin 27.7 8.2E+02 0.018 26.6 23.6 145 143-313 159-303 (306)
162 PF09246 PHAT: PHAT; InterPro 27.6 32 0.00068 31.3 1.2 30 541-582 15-44 (108)
163 PF09738 DUF2051: Double stran 27.3 5E+02 0.011 28.1 10.4 39 202-240 198-244 (302)
164 PRK01156 chromosome segregatio 27.2 1.2E+03 0.027 28.5 35.2 41 85-125 406-446 (895)
165 KOG0999 Microtubule-associated 26.9 1.1E+03 0.024 27.8 19.0 285 55-363 8-334 (772)
166 PF10398 DUF2443: Protein of u 26.9 4.1E+02 0.009 22.9 8.1 51 302-357 12-67 (79)
167 TIGR02680 conserved hypothetic 26.9 1.5E+03 0.033 29.5 26.4 125 24-161 740-868 (1353)
168 PF05384 DegS: Sensor protein 26.8 6.1E+02 0.013 24.8 10.2 36 38-73 3-38 (159)
169 PF12825 DUF3818: Domain of un 26.8 8.8E+02 0.019 26.6 19.8 190 144-370 107-330 (341)
170 KOG2180 Late Golgi protein sor 26.5 1.2E+03 0.027 28.3 18.5 109 144-292 72-186 (793)
171 PF03359 GKAP: Guanylate-kinas 26.2 3.1E+02 0.0067 30.3 8.8 56 113-175 180-235 (357)
172 KOG4196 bZIP transcription fac 25.8 1.6E+02 0.0036 27.9 5.5 26 45-70 78-103 (135)
173 PF12761 End3: Actin cytoskele 25.7 6.4E+02 0.014 25.6 10.1 61 50-115 134-194 (195)
174 PRK09737 EcoKI restriction-mod 25.6 84 0.0018 34.7 4.4 86 248-359 371-458 (461)
175 cd07610 FCH_F-BAR The Extended 25.5 6.1E+02 0.013 24.4 12.7 40 208-247 83-122 (191)
176 KOG3215 Uncharacterized conser 25.5 7.5E+02 0.016 25.4 12.4 54 63-122 131-191 (222)
177 PF01576 Myosin_tail_1: Myosin 25.4 23 0.00051 43.3 0.0 102 25-127 179-282 (859)
178 PF01496 V_ATPase_I: V-type AT 25.0 2.9E+02 0.0064 33.3 9.1 44 252-295 203-246 (759)
179 PF14943 MRP-S26: Mitochondria 25.0 6.8E+02 0.015 24.8 10.8 10 386-395 76-85 (170)
180 KOG3341 RNA polymerase II tran 24.8 2.3E+02 0.0049 29.3 6.7 61 14-79 19-81 (249)
181 PF05701 WEMBL: Weak chloropla 24.6 1.1E+03 0.025 27.2 20.8 40 143-182 40-79 (522)
182 PF09548 Spore_III_AB: Stage I 24.5 6.6E+02 0.014 24.4 9.9 95 158-265 21-120 (170)
183 PF12761 End3: Actin cytoskele 24.5 7.6E+02 0.016 25.1 10.7 86 84-171 99-194 (195)
184 PF15290 Syntaphilin: Golgi-lo 24.4 8.1E+02 0.017 26.4 10.9 32 208-239 68-99 (305)
185 PF05008 V-SNARE: Vesicle tran 24.3 4.2E+02 0.009 22.0 8.7 11 22-32 21-31 (79)
186 COG2433 Uncharacterized conser 23.9 3.1E+02 0.0067 32.4 8.4 94 83-180 417-510 (652)
187 PF12064 DUF3544: Domain of un 23.8 1.4E+02 0.003 29.6 4.8 38 496-539 49-86 (207)
188 PF02403 Seryl_tRNA_N: Seryl-t 23.8 3.1E+02 0.0068 24.3 7.0 72 45-125 33-104 (108)
189 PF10211 Ax_dynein_light: Axon 23.7 7.4E+02 0.016 24.7 13.0 18 108-125 169-186 (189)
190 PF04949 Transcrip_act: Transc 23.6 4.3E+02 0.0093 25.8 8.0 36 38-73 88-123 (159)
191 PF10234 Cluap1: Clusterin-ass 23.6 8.4E+02 0.018 26.0 11.0 124 12-165 135-267 (267)
192 KOG0972 Huntingtin interacting 23.4 6.7E+02 0.015 27.2 10.1 35 38-72 224-258 (384)
193 PRK10884 SH3 domain-containing 23.2 8.1E+02 0.017 24.9 11.0 80 86-182 98-177 (206)
194 PF08172 CASP_C: CASP C termin 22.5 6.6E+02 0.014 26.3 10.0 176 146-324 1-204 (248)
195 KOG0982 Centrosomal protein Nu 22.5 1.2E+03 0.026 26.7 21.6 61 212-292 357-417 (502)
196 TIGR02044 CueR Cu(I)-responsiv 22.3 4.6E+02 0.01 24.1 8.0 62 313-375 53-114 (127)
197 KOG0804 Cytoplasmic Zn-finger 22.2 1.2E+03 0.026 26.8 12.2 41 207-247 413-453 (493)
198 PF06120 Phage_HK97_TLTM: Tail 22.0 1E+03 0.022 25.8 14.5 74 41-128 41-114 (301)
199 PF05400 FliT: Flagellar prote 21.9 2.7E+02 0.0058 23.0 5.8 15 14-28 10-24 (84)
200 PF10239 DUF2465: Protein of u 21.8 1.1E+03 0.023 25.8 14.4 140 54-231 57-211 (318)
201 PF04111 APG6: Autophagy prote 21.7 1E+03 0.022 25.7 11.8 12 174-185 182-193 (314)
202 PF10481 CENP-F_N: Cenp-F N-te 21.5 7.6E+02 0.016 26.5 10.0 21 84-104 63-83 (307)
203 PF05600 DUF773: Protein of un 21.4 8.9E+02 0.019 28.1 11.7 45 84-128 127-171 (507)
204 PF05597 Phasin: Poly(hydroxya 21.4 4.6E+02 0.01 24.9 7.8 18 174-191 96-113 (132)
205 TIGR01843 type_I_hlyD type I s 21.4 1.1E+03 0.023 25.6 17.6 41 137-177 189-229 (423)
206 PRK11820 hypothetical protein; 21.2 1E+03 0.022 25.5 11.4 23 137-160 211-233 (288)
207 cd01109 HTH_YyaN Helix-Turn-He 21.2 6E+02 0.013 22.7 8.6 60 313-373 53-112 (113)
208 TIGR00255 conserved hypothetic 20.7 1E+03 0.023 25.4 11.3 23 137-160 214-236 (291)
209 PF06818 Fez1: Fez1; InterPro 20.6 9.2E+02 0.02 24.7 13.2 41 144-184 10-50 (202)
210 PF12004 DUF3498: Domain of un 20.5 34 0.00073 39.3 0.0 33 344-376 373-405 (495)
211 TIGR02338 gimC_beta prefoldin, 20.3 6.4E+02 0.014 22.7 12.0 33 208-240 74-106 (110)
212 cd04776 HTH_GnyR Helix-Turn-He 20.2 6.7E+02 0.014 22.9 8.6 63 313-376 51-116 (118)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=1.3e-92 Score=789.28 Aligned_cols=570 Identities=41% Similarity=0.569 Sum_probs=478.3
Q ss_pred hhhhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-C-
Q 045523 3 TPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCD-W- 80 (634)
Q Consensus 3 ~~~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~-~- 80 (634)
+++++.+|+.|||+||+++++||+++..|+++|+++|+++|+++...+++|+++|+++++++..||++||++++... .
T Consensus 16 ~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~ 95 (660)
T KOG4302|consen 16 CGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISD 95 (660)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999987655 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCccccCCCCCCHHHHHHHHHHHHHHHHH
Q 045523 81 TAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDN-MYKIIEDEADLSEQRLKELRSQLAYLQEE 159 (634)
Q Consensus 81 ~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~-~~~~~~d~~dLS~e~LeeLk~~L~~LqkE 159 (634)
...+||++++..|.+.|+.|+++|++|+++|.++..||+.||.+|||... +..+.+|..|||+++|++|+.+|.+|++|
T Consensus 96 k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~e 175 (660)
T KOG4302|consen 96 KIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKE 175 (660)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHH
Confidence 26789999999999999999999999999999999999999999999832 33345789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 160 KSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKA--SKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATS 237 (634)
Q Consensus 160 Ks~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~--s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~ 237 (634)
|..|+++|.+++.+|+.||.+||++|..++.++||+|.+..+ +++||+++|++|+..+..|+++|.+|++++++|+.+
T Consensus 176 k~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~ 255 (660)
T KOG4302|consen 176 KSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTK 255 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987655 899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 045523 238 LVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMH 317 (634)
Q Consensus 238 L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~ 317 (634)
|.+|||+|++|+|||..|.+++ ++|+|.+++||.++|.+++.||.||++||+++||+||+++|.||++||+.+|
T Consensus 256 ~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h 329 (660)
T KOG4302|consen 256 LLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLH 329 (660)
T ss_pred HHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred CCh--hhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhHHHHhhc-----------
Q 045523 318 TVT--ETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNR----------- 384 (634)
Q Consensus 318 ~s~--eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eEe~wLeEynr----------- 384 (634)
|+. ++|..|++.++|+|.+|+.++|+.+|.+|.++|+++.+||+|+++|++|++||+++.||++|||
T Consensus 330 ~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D~nR~~~~Rg~ 409 (660)
T KOG4302|consen 330 YSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRDSNRYNAGRGA 409 (660)
T ss_pred ccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccchhhhHhccccc
Confidence 999 8899999999999999999999999999999999999999999999999999999999999983
Q ss_pred -------------------------------------------hhHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 045523 385 -------------------------------------------VRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAE 421 (634)
Q Consensus 385 -------------------------------------------~rLl~~lee~~~~r~eKEeEK~r~R~~Kk~q~ql~~e 421 (634)
+||+.|+++|..||++||+||+|+|++||+++|+.++
T Consensus 410 h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~rd~kk~s~q~~~~ 489 (660)
T KOG4302|consen 410 HLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQRDQKKTSGQLKPE 489 (660)
T ss_pred hhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhcccccccccccCcc
Confidence 7899999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCC--CCCCCCCCCCCCCCCcccccccccccCCCchhhhhhhccccccCCcccCCCCCCCCccccccCCC
Q 045523 422 QEAIYGSKPSPSK--SGRKTSTTLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRPQSVSLAAGSG 499 (634)
Q Consensus 422 ~e~~~Gs~psp~~--~~rk~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (634)
++..|||+|||++ +.||..+.+++ ++.+++.|+++.+.+.+...+++ .-++++.+ +
T Consensus 490 ~~~~~~sk~sp~~p~s~rk~~~~~t~--~~~~~~~~ps~~~~s~~~~~~s~--------------~~~~~~~s------~ 547 (660)
T KOG4302|consen 490 QEGRYGSKPSPSKPNSPRKNRGRSTP--PNGSLSKTPSKRPLSGGNSAAST--------------QNRTTPLS------P 547 (660)
T ss_pred ccccccCCCCCCCCCccccCCCCCCC--CCCCCCCCCccCcCCCCCCCCCc--------------ccCCCCCC------c
Confidence 9999999999985 56666555543 35555555444432222211111 00111111 3
Q ss_pred CCCCCCCCCcccccccchhhhhhhhcccccCCCCCCcchh-hhhhhhhhhhhhhhhhccccCccccCCCcccCCcccccc
Q 045523 500 RRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLA-ISSKANIANFLEDKKRTHNGTSLKAVPSVAVTPSKQIVA 578 (634)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (634)
|++...+..|.++... .+...+.|+...++.++.+.+ .-++.|+.++.-.... ... ....-++..+.++
T Consensus 548 r~~~~~st~p~n~~~~---~~~~~l~s~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~--~~~~~s~~~s~~~ 617 (660)
T KOG4302|consen 548 RRLRASSTTPANKVAR---QKIESLNSNNSSPASSSLSTSQTHSQLNVEKSTIFLVP-----SDH--ETCSRSGRSSTGT 617 (660)
T ss_pred ccccCCCCCCchhhhc---ccccccccCCCCCccCCCCCCCCccccccccccccccc-----Ccc--hhhccCCCCCccc
Confidence 7777777777776654 333335555555555555544 2445555544422110 000 0011112222222
Q ss_pred ccccC--------CCCCCCC---CCCCCCccccccccccccCC
Q 045523 579 CNEGN--------KAPNTMP---SVPKTPSTFTAPMLMAMTPA 610 (634)
Q Consensus 579 ~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 610 (634)
-.-++ .+|++.. ++|++|..||++|.++.||.
T Consensus 618 r~~~~~r~~~~~~~~~~~s~k~~~~~~~~~~ss~~~~~~p~~~ 660 (660)
T KOG4302|consen 618 RNSEKKRLLSKSSSSPDTSGKLNSPPNEPEFSSYELSKSPTFL 660 (660)
T ss_pred cchhhhcccchhccCCchhhhhcCCCCCccccccccccCCCCC
Confidence 11111 2344442 78999999999999999984
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=6.9e-67 Score=595.54 Aligned_cols=493 Identities=34% Similarity=0.431 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCCCCC------C-CCCCC
Q 045523 24 RDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGE-----------QPGHCD------W-TAGGN 85 (634)
Q Consensus 24 Rd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge-----------~~~~~~------~-~~~~t 85 (634)
+|.|+.+++++|+++|+++|++++..+++|+++|+++++|++.||+++|. .|+... + ..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 81 (619)
T PF03999_consen 2 CDLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP 81 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc
Confidence 46789999999999999999999999999999999999999999544443 332211 1 15679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc-cccCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 045523 86 LRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYK-IIEDEADLS-EQRLKELRSQLAYLQEEKSSR 163 (634)
Q Consensus 86 L~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~-~~~d~~dLS-~e~LeeLk~~L~~LqkEKs~R 163 (634)
|++++..|+++|+.|+++|.+|+++|.+++.+++.||.+||..+.... ..++..+++ .++|+.|+.+|+.|++||+.|
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R 161 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERR 161 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643111 125566666 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCChh-hhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 164 LRKVMKHLSNVNSLCMVLGLDFK-DTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELW 242 (634)
Q Consensus 164 l~kv~el~~~I~~L~~eLg~df~-~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW 242 (634)
+++|.+++..|+.||.+||++|. ..+.....++.++...++||+++|++|...++.|+++|.+|.+++++|+.+|..||
T Consensus 162 ~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW 241 (619)
T PF03999_consen 162 LEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELW 241 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 54444333333446689999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhh
Q 045523 243 NLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTET 322 (634)
Q Consensus 243 ~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~ee 322 (634)
++|++|++||+.|...+ ++||.++|+++++||+||++||+++|++||+++|.+|++|||+|||++++
T Consensus 242 ~~L~~~~ee~~~F~~~~-------------~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~ee 308 (619)
T PF03999_consen 242 NRLDVPEEEREAFLEEN-------------SGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEE 308 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCHHHHHHHhhcc-------------CcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999995544 55669999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhHHHHhhc------------------
Q 045523 323 VGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNR------------------ 384 (634)
Q Consensus 323 r~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eEe~wLeEynr------------------ 384 (634)
|..|.++|+|.+ .|+||+.||.||++||++|++||+||++|++|.++|++..||++|++
T Consensus 309 r~~F~~~~~d~~---~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEEk~ 385 (619)
T PF03999_consen 309 RQAFTPFYIDSY---TEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNNRGGHLLKEEKE 385 (619)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG------HHHHHHH
T ss_pred HHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccHHHHHHHH
Confidence 999999987643 49999999999999999999999999999999999999999999943
Q ss_pred ----------------------------------hhHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccCCC
Q 045523 385 ----------------------------------VRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGSKP 430 (634)
Q Consensus 385 ----------------------------------~rLl~~lee~~~~r~eKEeEK~r~R~~Kk~q~ql~~e~e~~~Gs~p 430 (634)
+++|.++++|...+..++++|.+.|++|+.+.+..++++++||++|
T Consensus 386 rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~~~s~~ 465 (619)
T PF03999_consen 386 RKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQKQTEQEMPYGSKP 465 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCCccccCCCCCCcc
Confidence 7899999888888888888888889999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhhhhccccccCCcccCCCCCCCCccccccCCCCCCCCCCCCcc
Q 045523 431 SPSKSGRKTSTTLTGIASNRKLSLGGVMLQNLKPEKEALCVHSNKKIDGLYRNSPFGRPQSVSLAAGSGRRNSEIPGNVV 510 (634)
Q Consensus 431 sp~~~~rk~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (634)
+|.+++.+..++++++.+++..+.++.++..|.+....+..++. +.+..+.+|..|.+.++ ..++.++. -.++.|.
T Consensus 466 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~s-~~~~~~~ 541 (619)
T PF03999_consen 466 SPAPSTPSKRRSSSGLTSNTPSSRRTPNTTNPSTSSSNSSIRSS--TGNTRSRSPPSRLSSGS-KPSSASRS-SQSKTPR 541 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccCCCccCCCC--CCCCCcCCCCCccccCC-CCCCCCcc-ccCCCCC
Confidence 76643322223222222233333333222222222111111111 11233445555553322 22222232 3455555
Q ss_pred cccccchhhhhhhhcccccCCCCCCcchh
Q 045523 511 NKSCSSVAAKARKVESKSARKPLSPVSLA 539 (634)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (634)
.+.+. +.+..+.||....|.+|+++.
T Consensus 542 ~~~~~---~~~~~~~s~~~~~~~~~~~~~ 567 (619)
T PF03999_consen 542 PKRSP---NKSSNSSSPGSSLSGTPPSSA 567 (619)
T ss_dssp -----------------------------
T ss_pred CCcCC---CcccccCCCCCCCCCCCCCCC
Confidence 44432 344446677777777776644
No 3
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.93 E-value=4e-26 Score=261.20 Aligned_cols=391 Identities=20% Similarity=0.291 Sum_probs=70.5
Q ss_pred hhHHHHHHHHhhhCCChHHHHHH-------------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 5 IKFRPNSKIWDEVGESDNERDKM-------------ILEIEQ-----ECLAVYGRKIDDAKISRAQLLRAIALSEAEVAD 66 (634)
Q Consensus 5 ~lL~eLq~IWdEIG~~e~eRd~m-------------l~~lEq-----ecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~ 66 (634)
.+-.++..|+.++|+..+.--.. +.+.+. +++..++..+++....+...++.|.++..++..
T Consensus 37 ~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~ 116 (619)
T PF03999_consen 37 DAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQ 116 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788877777654432111 112221 245568888999999999999999999999999
Q ss_pred HHHHhCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCc--c----
Q 045523 67 ICSTLGEQPGHCD----WTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDN--MYK--I---- 134 (634)
Q Consensus 67 L~~eLge~~~~~~----~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~--~~~--~---- 134 (634)
||.+||..+.... +..+.+-.+++..|+.+|+.|+.+|..|+.+|..+..+|..||.+||..+. .+. +
T Consensus 117 l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~ 196 (619)
T PF03999_consen 117 LCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYS 196 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccc
Confidence 9999997654322 113445457899999999999999999999999999999999999998752 111 1
Q ss_pred -ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh--hhhhccCCCCCCCCCCCCCHHHHH
Q 045523 135 -IEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKD--TVCKIHPTLNDPKASKDVSNDTIE 211 (634)
Q Consensus 135 -~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~--~v~evhpsl~d~~~s~~LS~~~L~ 211 (634)
..+..+||.+.|+.|...+..|+.+|..|..++..+...|..||..||++... .+. ....++|.++|+
T Consensus 197 ~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~---------~~~~~ls~~~i~ 267 (619)
T PF03999_consen 197 EDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFL---------EENSGLSLDTIE 267 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh---------hccCcchHHHHH
Confidence 12356899999999999999999999999999999999999999999998632 231 125678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHH
Q 045523 212 KMATTIQSLQEVKIQRMQKL-QHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRL 290 (634)
Q Consensus 212 ~L~~~l~~LeeeK~~R~~kl-~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRL 290 (634)
.|..++++|++.|.++++.+ .+.+.+|.+||+.|.+++++|..|...+. ++.+.++++.++.||.||
T Consensus 268 ~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~------------d~~~E~lL~~hE~Ei~~L 335 (619)
T PF03999_consen 268 ALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYI------------DSYTEELLELHEEEIERL 335 (619)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc------------ccchHHHHHHHHHHHHHH
Confidence 99999999999999999996 88999999999999999999999988764 334589999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhh---hhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q 045523 291 EQLKSSKMKELVLKKKLELAEILRKMHTVTETVG---DFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVE 367 (634)
Q Consensus 291 eeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~---~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Ve 367 (634)
++.+..+ +.+. +.-.+..++|+.+..=++... .|. ..| ..||..-+..-.-.+.....-+.|..+|.
T Consensus 336 k~~~~~~-k~Il-~~v~k~~~l~~~~~~Le~~~~D~~Rl~----~RG----g~LLkEEk~rk~i~k~lPkle~~L~~~l~ 405 (619)
T PF03999_consen 336 KEEYESR-KPIL-ELVEKWESLWEEMEELEESSKDPSRLN----NRG----GHLLKEEKERKRIQKKLPKLEEELKKKLE 405 (619)
T ss_dssp HHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHH-CCGG--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHhcChhhhc----ccc----cHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9998762 2222 244555778876621111111 222 123 44776666555556888889999999999
Q ss_pred HHHHHh------hhhhHHHHhhchhHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccCCCC
Q 045523 368 KWFTAR------EEESWLEEYNRVRLISMLEDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGSKPS 431 (634)
Q Consensus 368 kw~sl~------eEe~wLeEynr~rLl~~lee~~~~r~eKEeEK~r~R~~Kk~q~ql~~e~e~~~Gs~ps 431 (634)
.|..-. +...+|+ .|....++|..++++|+..|.+.+.+++.+.+..+--...-.+.|+
T Consensus 406 ~wE~e~g~pFlv~G~~~le-----~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~~~s~~s~~~~ 470 (619)
T PF03999_consen 406 EWEEEHGKPFLVDGERYLE-----YLEEYEEQWERKREEKERSKQQKKLQNQKQTEQEMPYGSKPSPAPS 470 (619)
T ss_dssp HHHHHHTS--EETTEEHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHcCCeEEEcCccHHH-----HHHHHHHHHHhhhhhhccccccCCCCCCCccccCCCCCCccccCCC
Confidence 997533 2233342 3445678999999999999988777776665544444443333343
No 4
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.91 E-value=1.4e-20 Score=211.90 Aligned_cols=286 Identities=18% Similarity=0.253 Sum_probs=234.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccC
Q 045523 62 AEVADICSTLGEQPGHCDWTAGGNLRD----KLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIED 137 (634)
Q Consensus 62 ~EL~~L~~eLge~~~~~~~~~~~tL~e----qL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d 137 (634)
.+|+.||+++|++.... +.-|.+ ++..|+..+++....+..-.+++...++++..||..|+.... +....+
T Consensus 21 ~eL~~IW~~igE~~~e~----d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~-~~~~~~ 95 (660)
T KOG4302|consen 21 NELQKIWDEIGESETER----DKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSI-IGEISD 95 (660)
T ss_pred HHHHHHHHHhCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc-cccccc
Confidence 34999999999976442 222332 467899999999999999999999999999999999999842 222234
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 045523 138 EADLSE-QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATT 216 (634)
Q Consensus 138 ~~dLS~-e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~ 216 (634)
....|+ +.|..+...+..|++.|++|..+|.++..+|..||.+||..+. ..++.. .+..+||+..|+.|+..
T Consensus 96 k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~----~~~~~~---~D~~dlsl~kLeelr~~ 168 (660)
T KOG4302|consen 96 KIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED----LPSFLI---ADESDLSLEKLEELREH 168 (660)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----CCcccc---cCcccccHHHHHHHHHH
Confidence 455574 8999999999999999999999999999999999999999821 111111 34678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCccccc--CCCcCcHHHHHHHHHHHHHHHHHH
Q 045523 217 IQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEIT--EPNFLSMNNIKYVEGEVSRLEQLK 294 (634)
Q Consensus 217 l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~--~~~~LS~~tI~~le~EVeRLeeLK 294 (634)
+..|+++|..|++++..+...|..||..||++ |..+...+++|..+-. .+.++|.++|+.+..-|..|.+.|
T Consensus 169 L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k 242 (660)
T KOG4302|consen 169 LNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEK 242 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 7766666776766544 378999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCCChhhhhhhhh----HhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 045523 295 SSKMKELVLKKKLELAEILRKMHTVTETVGDFSI----EAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKW 369 (634)
Q Consensus 295 ~~~mkeLI~k~R~ELeeLWdk~~~s~eer~~F~~----~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw 369 (634)
.+++.++- ..+..|.+||++|.+++++|..|.. .+-+++ .-..+++...+.|+.+|.+...++ |=++|++-
T Consensus 243 ~qr~~kl~-~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~-~ls~d~I~~ve~Ev~Rl~qlK~s~--mKeli~k~ 317 (660)
T KOG4302|consen 243 KQRLQKLQ-DLRTKLLELWNLLDTSDEERQRFVHVTESEATEPN-SLSLDIIEQVEKEVDRLEQLKASN--MKELIEKK 317 (660)
T ss_pred HHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHccccHHHhhccc-cccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHH
Confidence 99999965 5999999999999999999998853 222222 223788999999999999888877 55555443
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.37 E-value=14 Score=48.51 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 36 LAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDW-T-AGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQ 113 (634)
Q Consensus 36 l~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~-~-~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~e 113 (634)
+.-+...+++....|..+...=.+++.++..++.+++.-.+.... + ....+..++..++..++++.....+-..+...
T Consensus 1191 ~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~ 1270 (1930)
T KOG0161|consen 1191 LAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSR 1270 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888888888888899999999999999854332110 0 22334445666666666666554444444444
Q ss_pred HHHHHHHHHHHhCCCCCCCccccCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 045523 114 VLNQLQIISNEICPKDNMYKIIEDEADLS--EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDF 185 (634)
Q Consensus 114 l~~qI~~Lc~eL~~~~~~~~~~~d~~dLS--~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df 185 (634)
++.+...+...+.... .....-..+.+ ..+|+.++.++..-..++......+..+...+..|-..+..+.
T Consensus 1271 l~~E~~~l~~~lee~e--~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~ 1342 (1930)
T KOG0161|consen 1271 LQNENEELSRQLEEAE--AKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ 1342 (1930)
T ss_pred hhhhHHHHhhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333221 00000011112 3567777777777777777888888888888777777777665
No 6
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.20 E-value=9 Score=45.20 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSR 163 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~R 163 (634)
..+.++++.+...+..+..+..+-.+++..++.++..+-..+..-...+ .....-..++.+.+..++..++.++.++
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~---~~~GG~~~~~r~~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF---RSEGGDLFEEREQLERQLKEIEAARKAN 281 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888877777777777777777776666554321000 0011123455677888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 045523 164 LRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQH-LATSLVELW 242 (634)
Q Consensus 164 l~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~-L~~~L~eLW 242 (634)
.+.+..+... ..++.|....|..+...+...+.-+ +.+.+.+ |......||
T Consensus 282 ~~~l~~l~~~--------------------------~~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~~~~i~ 333 (650)
T TIGR03185 282 RAQLRELAAD--------------------------PLPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEERDKELL 333 (650)
T ss_pred HHHHHHHhcc--------------------------cCCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 7766665541 2256666777888877777665333 3333333 346667777
Q ss_pred HHc---CCCHHHHHHHHhhhcc-ccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHh
Q 045523 243 NLM---DTPLEEQEMFHNITSK-IAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELV---LKKKLELAEILRK 315 (634)
Q Consensus 243 ~~L---~ip~eEr~~F~~~~~~-i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI---~k~R~ELeeLWdk 315 (634)
..+ ..+.+..+........ ..+...+..-+-+++...+..+..-++.+..-....+..++ .+...+|.++=++
T Consensus 334 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~ 413 (650)
T TIGR03185 334 ESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKK 413 (650)
T ss_pred HHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766 5555544333332211 11122333345567777676666666655522223333333 3466777777777
Q ss_pred cCCCh
Q 045523 316 MHTVT 320 (634)
Q Consensus 316 ~~~s~ 320 (634)
+.-.+
T Consensus 414 l~~~~ 418 (650)
T TIGR03185 414 ISTIP 418 (650)
T ss_pred HhcCC
Confidence 75443
No 7
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.18 E-value=6.7 Score=44.88 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045523 20 SDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLED 99 (634)
Q Consensus 20 ~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEe 99 (634)
...+|..++..+-. +++|..+-.........+.+.++.+..++..+-..+..-. ..+.+.-+.....++.
T Consensus 148 ~~~er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~--------~~i~~~~~~~~~~i~~ 217 (562)
T PHA02562 148 SAPARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYN--------KNIEEQRKKNGENIAR 217 (562)
T ss_pred ChHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHH
Confidence 34456666555431 3566665555555555666667777777766666654311 1122222233344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 100 MRQRKIDRKNQFLQVLNQLQIISNEI 125 (634)
Q Consensus 100 Lrk~K~eR~~ef~el~~qI~~Lc~eL 125 (634)
++.+..+-..+...++.++..+-+.|
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666655
No 8
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.96 E-value=13 Score=45.96 Aligned_cols=104 Identities=17% Similarity=0.101 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHH
Q 045523 206 SNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEG 285 (634)
Q Consensus 206 S~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~ 285 (634)
++.+|++++..+.+|+.+...-..++..|...+..+=.++.-=..+-..+.+....+. .=+.++...++.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k----------~~~~~~k~~~e~ 1002 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIK----------KELRDLKSELEN 1002 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4567777777777777777666666766666666665555333333333333332222 111344455555
Q ss_pred HHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhcCCC
Q 045523 286 EVSRLEQLKSSK--MKELVLKKKLELAEILRKMHTV 319 (634)
Q Consensus 286 EVeRLeeLK~~~--mkeLI~k~R~ELeeLWdk~~~s 319 (634)
.-....+||..+ |+..++..+.+|.++=....+.
T Consensus 1003 i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 1003 IKKSENELKAERIDIENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhH
Confidence 555555666544 4455556666776665444333
No 9
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.10 E-value=26 Score=45.65 Aligned_cols=273 Identities=16% Similarity=0.226 Sum_probs=171.1
Q ss_pred hhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC-CCCC--
Q 045523 5 IKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGE-QPG-HCDW-- 80 (634)
Q Consensus 5 ~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge-~~~-~~~~-- 80 (634)
.||.-++.+=+.+-..+..-+.++..+.++-++-....|++.........+.|..+..+.+.+-.-+.. .+. ...+
T Consensus 543 eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~ns 622 (1822)
T KOG4674|consen 543 ELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNS 622 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCc
Confidence 466667777777766666668999999999999999999999999999999999988888777322221 111 0110
Q ss_pred -----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHH
Q 045523 81 -----T-AGGNLRDKLKTITPLLEDMRQRKIDRKN----QFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELR 150 (634)
Q Consensus 81 -----~-~~~tL~eqL~~l~~~LEeLrk~K~eR~~----ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk 150 (634)
. ..+++..++..+...++.++.++.++++ +|..++.++..|...++-. .....++.++++.|+
T Consensus 623 s~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~-------~~~~~fA~ekle~L~ 695 (1822)
T KOG4674|consen 623 SALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKL-------KNELNLAKEKLENLE 695 (1822)
T ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHH
Confidence 0 2233466777788888888877777764 5666777777777777654 223467889999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045523 151 SQLAYLQEEKS---SRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQR 227 (634)
Q Consensus 151 ~~L~~LqkEKs---~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R 227 (634)
..|..++.+.. .|...+..++..-......+.. + ...+++.++.|...+..|..++.-+
T Consensus 696 ~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~-------e-----------L~~a~~k~~~le~ev~~LKqE~~ll 757 (1822)
T KOG4674|consen 696 KNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQ-------E-----------LLSANEKLEKLEAELSNLKQEKLLL 757 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988888887 4444444444332222222211 1 1123678888999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045523 228 MQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKL 307 (634)
Q Consensus 228 ~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ 307 (634)
..--..|......|.... ..... ....+.....+.++.+.-.+.++..=|.....
T Consensus 758 ~~t~~rL~~e~~~l~~e~-------~~L~~------------------~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~ 812 (1822)
T KOG4674|consen 758 KETEERLSQELEKLSAEQ-------ESLQL------------------LLDNLQTQKNELEESEMATKDKCESRIKELER 812 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665555554432 00100 03345555556666655555555555555555
Q ss_pred HHHHHHHhcCCChhhhhhhh
Q 045523 308 ELAEILRKMHTVTETVGDFS 327 (634)
Q Consensus 308 ELeeLWdk~~~s~eer~~F~ 327 (634)
+|..+=.++.=..++...|.
T Consensus 813 el~~lk~klq~~~~~~r~l~ 832 (1822)
T KOG4674|consen 813 ELQKLKKKLQEKSSDLRELT 832 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555433333333443
No 10
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.93 E-value=16 Score=42.52 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHhhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 3 TPIKFRPNSKIWDEVG-ESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGE 73 (634)
Q Consensus 3 ~~~lL~eLq~IWdEIG-~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge 73 (634)
|...+.+++.=|++|- ..=.+=+..|.+.|. .+-+-.+-.++..-..+.+.|..++.++..|..+|..
T Consensus 62 s~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~---~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~ 130 (569)
T PRK04778 62 SEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEE---LNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQE 130 (569)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788889999954 333344667777764 2333345566666677777777777777777766653
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.16 E-value=29 Score=43.11 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 145 RLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV 180 (634)
Q Consensus 145 ~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e 180 (634)
.+..++..+..++.+...-...+..+...+..+-..
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e 834 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444454444444444333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=92.90 E-value=28 Score=42.31 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhchHH
Q 045523 342 LEQIDLQIAKAKEEASSRKEI 362 (634)
Q Consensus 342 L~~~E~EI~rLKe~~~srK~I 362 (634)
++.++.++..++..+..-+.+
T Consensus 484 ~~~le~~l~~~~~~~e~l~~~ 504 (880)
T PRK02224 484 LEDLEEEVEEVEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 13
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.63 E-value=26 Score=41.32 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 045523 278 NNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKM 316 (634)
Q Consensus 278 ~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~ 316 (634)
..++.++.=...|..++.......+.....++.+++..+
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l 518 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKL 518 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666666666777777666
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.76 E-value=49 Score=42.47 Aligned_cols=204 Identities=11% Similarity=0.181 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 045523 144 QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVN-SLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQE 222 (634)
Q Consensus 144 e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~-~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Lee 222 (634)
.........+.-+++++..+...+..+..... .+...+| +|... +. + ...+..+...+..+++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~---------l-~~~~~~~~~el~~~~~ 591 (1311)
T TIGR00606 528 NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YFPNK-----KQ---------L-EDWLHSKSKEINQTRD 591 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCc-----HH---------H-HHHHHHHHHHHHHHHH
Confidence 34445566677777777777777776666543 2333345 43110 00 0 3344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHH------HH
Q 045523 223 VKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLK------SS 296 (634)
Q Consensus 223 eK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK------~~ 296 (634)
.......++..+-..+..+=..+.--..+-+.+....... .++..+ .++|..++.++.....-. ..
T Consensus 592 ~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~-------~~~~~~-~~~L~~~~~~l~~~~~~~~~~~~~~~ 663 (1311)
T TIGR00606 592 RLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-------CGSQDE-ESDLERLKEEIEKSSKQRAMLAGATA 663 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333322222222222111100 001111 235555555555544111 11
Q ss_pred hHHHHHHHHHHH---HHHHHHhcCCChhhhhhhhhHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 045523 297 KMKELVLKKKLE---LAEILRKMHTVTETVGDFSIEAIESGSMDF-MDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTA 372 (634)
Q Consensus 297 ~mkeLI~k~R~E---LeeLWdk~~~s~eer~~F~~~~idsg~~D~-EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl 372 (634)
.++.++.....+ -+-+|..-+-+.++...|+..+-+. ++. -+.++..+..+..+++.+..-..+-..+..|..+
T Consensus 664 ~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~--~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l 741 (1311)
T TIGR00606 664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSK--LRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741 (1311)
T ss_pred HHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHH--HhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 233344333112 2344555555555545776655331 111 2345666677777777777777776677777666
Q ss_pred h
Q 045523 373 R 373 (634)
Q Consensus 373 ~ 373 (634)
.
T Consensus 742 ~ 742 (1311)
T TIGR00606 742 K 742 (1311)
T ss_pred H
Confidence 5
No 15
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.72 E-value=35 Score=43.04 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=27.0
Q ss_pred hhHHhhH-HHHHHHHHHHHHHHHHHHh-hhhhHHHH
Q 045523 385 VRLISML-EDYSCMRQEKELERQRQKD-HRKLQVQL 418 (634)
Q Consensus 385 ~rLl~~l-ee~~~~r~eKEeEK~r~R~-~Kk~q~ql 418 (634)
.|+..-| .+-..+|.|+|+|++-.|+ .|.+|.||
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~ql 1189 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQL 1189 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5655444 7889999999999988886 67788887
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.72 E-value=58 Score=43.21 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHH
Q 045523 26 KMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDW--TAGGNLRDKLKTITPLLEDMRQR 103 (634)
Q Consensus 26 ~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~--~~~~tL~eqL~~l~~~LEeLrk~ 103 (634)
+....++-++ .....-+++.+..++.+-..++....|+..|-..++........ ..-.-|-.+++.+...++.-+..
T Consensus 1041 k~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1041 KAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555 55666667777778888888888888887777777653221100 00001111233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 045523 104 KIDRKNQFLQVLNQLQIISNEI 125 (634)
Q Consensus 104 K~eR~~ef~el~~qI~~Lc~eL 125 (634)
...--+++.++..+++.+-.+|
T Consensus 1120 r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1120 RAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555554444
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.61 E-value=27 Score=40.45 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 85 NLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEI 125 (634)
Q Consensus 85 tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL 125 (634)
.|.++.+.+....+.+..++.....+..+....|..|-..+
T Consensus 189 ~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 189 QLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555444444444444444444444433
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.67 E-value=59 Score=41.40 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 045523 138 EADLSEQRLKELRSQLAYLQEEK---SSRLRKVMKHLSNVNSLCMVL 181 (634)
Q Consensus 138 ~~dLS~e~LeeLk~~L~~LqkEK---s~Rl~kv~el~~~I~~L~~eL 181 (634)
+.++-...|..|+..+..|+++. ..+...|.++..-+...|...
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~ 811 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKV 811 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 34555778888999998888765 577788888888888888753
No 19
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.05 E-value=12 Score=38.63 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQV 114 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el 114 (634)
|+.-++.++.+..+.+++|++.++.++.+-. .|..|+...+.|..+|...+.++..+
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~-----------------------~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEEK-----------------------CLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999888776543 34578888888888999999999988
Q ss_pred HHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChh
Q 045523 115 LNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV-LGLDFK 186 (634)
Q Consensus 115 ~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e-Lg~df~ 186 (634)
...|..|-+.|... ....+..+..+..++.| +..++..|..+-.+ +|++..
T Consensus 59 ~~DIn~lE~iIkqa--------------~~er~~~~~~i~r~~ee-------y~~Lk~~in~~R~e~lgl~~L 110 (230)
T PF10146_consen 59 NQDINTLENIIKQA--------------ESERNKRQEKIQRLYEE-------YKPLKDEINELRKEYLGLEPL 110 (230)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCCCC
Confidence 88888876666433 12233344444444444 55566666666666 887753
No 20
>PF13514 AAA_27: AAA domain
Probab=90.00 E-value=63 Score=40.71 Aligned_cols=90 Identities=12% Similarity=0.195 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 39 YGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWT--AGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLN 116 (634)
Q Consensus 39 yr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~--~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~ 116 (634)
+...+++.......+...++..+.+....+..+|.++...... ......+.+......+..++.+...-.+.+..+..
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~ 764 (1111)
T PF13514_consen 685 LEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEE 764 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777888888888899999999999976432110 11223333444445555555555556666666777
Q ss_pred HHHHHHHHhCCC
Q 045523 117 QLQIISNEICPK 128 (634)
Q Consensus 117 qI~~Lc~eL~~~ 128 (634)
++..|+..++..
T Consensus 765 ~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 765 QVAALAERLGPD 776 (1111)
T ss_pred HHHHHHHHcCcc
Confidence 777777777654
No 21
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.99 E-value=59 Score=40.38 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhchH-HHHHHHHHHHH
Q 045523 343 EQIDLQIAKAKEEASSRKE-ILEKVEKWFTA 372 (634)
Q Consensus 343 ~~~E~EI~rLKe~~~srK~-Ile~Vekw~sl 372 (634)
+.++.++.+++.......+ =+..++.|..+
T Consensus 954 ~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~ 984 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEV 984 (1164)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3455555555555444333 22344444333
No 22
>PRK11637 AmiB activator; Provisional
Probab=89.54 E-value=40 Score=37.71 Aligned_cols=10 Identities=10% Similarity=0.036 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q 045523 499 GRRNSEIPGN 508 (634)
Q Consensus 499 ~~~~~~~~~~ 508 (634)
++.|.||++-
T Consensus 328 ~~~Gi~i~~~ 337 (428)
T PRK11637 328 RWKGMVIGAS 337 (428)
T ss_pred CCCCEEeecC
Confidence 3678888754
No 23
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.43 E-value=81 Score=41.12 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcc
Q 045523 392 EDYSCMRQEKELERQRQKDHRKLQ-VQLIAEQEAIY 426 (634)
Q Consensus 392 ee~~~~r~eKEeEK~r~R~~Kk~q-~ql~~e~e~~~ 426 (634)
.+|.....++|+|-++.|++.+.+ .+|..+.+.++
T Consensus 630 ~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~ 665 (1486)
T PRK04863 630 TEYMQQLLERERELTVERDELAARKQALDEEIERLS 665 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455555555555555544433 23445555443
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.12 E-value=64 Score=40.05 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 138 EADLSEQRLKELRSQLAYLQEEKSSRLRKVMK 169 (634)
Q Consensus 138 ~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~e 169 (634)
+.+--.++++.++.-+..+..++.+=..++.+
T Consensus 331 e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~ 362 (1074)
T KOG0250|consen 331 EVDAQDEEIEEARKDLDDLRREVNDLKEEIRE 362 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666555554433333333
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.10 E-value=66 Score=39.70 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHH
Q 045523 205 VSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVE 284 (634)
Q Consensus 205 LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le 284 (634)
.....+.+|...+.+++.+++.-..++..+..+.. .+ .+|...|......+. |...+.....
T Consensus 903 ~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~----wi---~~ek~~fgk~gt~yD-----------f~~~~p~~ar 964 (1174)
T KOG0933|consen 903 DGELERKKLEHEVTKLESEKANARKEVEKLLKKHE----WI---GDEKRLFGKKGTDYD-----------FESYDPHEAR 964 (1174)
T ss_pred cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhcc----ch---hHHHHhhcCCCCccc-----------cccCCHhHHH
Confidence 34567888999999999998888888887776654 22 278888977665543 3344555666
Q ss_pred HHHHHHHHHH
Q 045523 285 GEVSRLEQLK 294 (634)
Q Consensus 285 ~EVeRLeeLK 294 (634)
.++.+|++.+
T Consensus 965 e~l~~Lq~k~ 974 (1174)
T KOG0933|consen 965 EELKKLQEKK 974 (1174)
T ss_pred HHHHHhhHHH
Confidence 6666665544
No 26
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=27 Score=41.66 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 46 AKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIIS 122 (634)
Q Consensus 46 ~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc 122 (634)
.+..+.+|.+.+..+...++.|...|+.-.+ .-++-++.++.++.+.|.+..+..+..++++++++.+..|.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~-----~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~ 506 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRV-----DITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLA 506 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhee-----ccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456777888888888888888777765332 23455665666666666666655555555555555555553
No 27
>PRK11637 AmiB activator; Provisional
Probab=87.62 E-value=52 Score=36.75 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCC--CCCHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEA--DLSEQRLKELRSQLAYLQEEKS 161 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~--dLS~e~LeeLk~~L~~LqkEKs 161 (634)
..+.++++.++.+++.+.++..+-..+..++..++..+-..|..... .+..-.. .-...+++.++..|..++.+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~--~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASR--KLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777776666666666666666666666655543310 0000000 1123444455555555555555
Q ss_pred HHHHHHHHHHH
Q 045523 162 SRLRKVMKHLS 172 (634)
Q Consensus 162 ~Rl~kv~el~~ 172 (634)
.+...+...+.
T Consensus 121 ~~~~~l~~rlr 131 (428)
T PRK11637 121 AQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHH
Confidence 55544444444
No 28
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.40 E-value=42 Score=35.47 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQV 114 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el 114 (634)
++..|=.+|-..+.....|...|..+... -|..+.. ........+..++..|+.+..++..-.-++..+
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~i~~~~~~-------~~~~~~~----~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESEIEELREK-------KGEEVSR----IKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------HH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhc-------ccccCcc----cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 55556666665555555555444443332 1111100 112344456677777777777777766666666
Q ss_pred HHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 115 LNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVL 181 (634)
Q Consensus 115 ~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eL 181 (634)
...+..+-..+... ......+...+..|+++.+.=...-..+-..|..|..+|
T Consensus 81 ~~e~~~~r~k~e~e--------------~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 81 KEELEDLRRKYEEE--------------LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 66666664444221 233444555555555555544444445555555555544
No 29
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.09 E-value=60 Score=36.87 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhcCCChhhh
Q 045523 277 MNNIKYVEGEVSRLEQLKSS---KMKELVLKKKLELAEILRKMHTVTETV 323 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~~---~mkeLI~k~R~ELeeLWdk~~~s~eer 323 (634)
..-++.++.|+..|.-+-.. ....+|.+.+-+++++-..|.+--..-
T Consensus 532 ~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i 581 (622)
T COG5185 532 RIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKI 581 (622)
T ss_pred HHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34567777777777554433 334667777777777777775444333
No 30
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.48 E-value=77 Score=37.51 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 41 RKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQI 120 (634)
Q Consensus 41 ~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~ 120 (634)
..|......|......|..++..|..|-..+..++.... ..++... ...+...++.|+++++.-..++......-+.
T Consensus 36 eev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~--pa~pse~-E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~ 112 (617)
T PF15070_consen 36 EEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEP--PAGPSEV-EQQLQAEAEHLRKELESLEEQLQAQVENNEQ 112 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc--cccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556667888888899999999999888887663322 2333332 3566677777777665555555544333333
Q ss_pred HHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 121 ISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKV 167 (634)
Q Consensus 121 Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv 167 (634)
|...... -.++|.++...+..++....+|.+.+
T Consensus 113 Ls~L~~E--------------qEerL~ELE~~le~~~e~~~D~~kLL 145 (617)
T PF15070_consen 113 LSRLNQE--------------QEERLAELEEELERLQEQQEDRQKLL 145 (617)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211111 13556666666666666655554433
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.68 E-value=1.2e+02 Score=38.83 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC
Q 045523 202 SKDVSNDTIEKMATTIQSLQEVK---IQRMQKLQHLATSLVELWNLMDT 247 (634)
Q Consensus 202 s~~LS~~~L~~L~~~l~~LeeeK---~~R~~kl~~L~~~L~eLW~~L~i 247 (634)
..++....|..|+..+..|+.+- .++...+.++..-+.++|..++-
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~ 813 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDE 813 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 45677888888888888887554 44556688899999999998653
No 32
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=85.38 E-value=49 Score=34.27 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhc
Q 045523 277 MNNIKYVEGEVSRLEQLKSSKMKELVLK-------KKLELAEILRKM 316 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~~~mkeLI~k-------~R~ELeeLWdk~ 316 (634)
.++-+.+..||.|.+.-|..-++..+.. ...++.++|...
T Consensus 183 e~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f 229 (234)
T cd07664 183 EQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677889999988887766655544 556889999865
No 33
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=85.14 E-value=1.1e+02 Score=37.98 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=11.2
Q ss_pred cCCCCCCcchhhhhhhhhhhhhhhh
Q 045523 529 ARKPLSPVSLAISSKANIANFLEDK 553 (634)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (634)
+--|++-+++. ...++.+++...
T Consensus 1117 lDE~~~~ld~~--~~~~~~~~~~~~ 1139 (1179)
T TIGR02168 1117 LDEVDAPLDDA--NVERFANLLKEF 1139 (1179)
T ss_pred ecCccccccHH--HHHHHHHHHHHh
Confidence 34466655543 344555555443
No 34
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=84.49 E-value=45 Score=41.23 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHhhhccccCCcccccCCCcC
Q 045523 202 SKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTP------LEEQEMFHNITSKIAALEPEITEPNFL 275 (634)
Q Consensus 202 s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip------~eEr~~F~~~~~~i~~S~~ei~~~~~L 275 (634)
+.++ +.|++|+..++.+.. .-+..|...+....+.|.+- .+-++.|........ +.|
T Consensus 1233 PLDl--SDlDkLk~~LQ~iNQ------~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~-tlD-------- 1295 (1439)
T PF12252_consen 1233 PLDL--SDLDKLKGQLQKINQ------NLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEK-TLD-------- 1295 (1439)
T ss_pred ccch--hhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH-Hhc--------
Confidence 4445 668888777766532 22445556666666666642 112444544332211 111
Q ss_pred cHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcCC
Q 045523 276 SMNNIKYVEGEVSRLEQLKSS------KMKELVLKKKLELAEILRKMHT 318 (634)
Q Consensus 276 S~~tI~~le~EVeRLeeLK~~------~mkeLI~k~R~ELeeLWdk~~~ 318 (634)
+.++-....+++..|.++-.. .|-.|..+.-.=|..|-+.|..
T Consensus 1296 ~S~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~ 1344 (1439)
T PF12252_consen 1296 DSDTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEA 1344 (1439)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHH
Confidence 135666677777777655332 3555655555555555555544
No 35
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.44 E-value=97 Score=36.11 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHhhhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 3 TPIKFRPNSKIWDEVGE-SDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGE 73 (634)
Q Consensus 3 ~~~lL~eLq~IWdEIG~-~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge 73 (634)
|...+.+++.=|++|-- .=.+-+.+|.+.|. .+.+-.+-.+...-..+.+.|..++.++..|..+|..
T Consensus 58 t~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~---~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 58 TEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEE---YADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999873 33455777888875 3555566677777788888888888888888777764
No 36
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.44 E-value=1.4e+02 Score=37.94 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAEVADIC 68 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~ 68 (634)
.-++..+.+....-..+...++....++..+.
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1163)
T COG1196 705 EELRRQLEELERQLEELKRELAALEEELEQLQ 736 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 37
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=83.02 E-value=89 Score=35.37 Aligned_cols=138 Identities=8% Similarity=0.101 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 95 PLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEA--DLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLS 172 (634)
Q Consensus 95 ~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~--dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~ 172 (634)
.++..+..+...-..++..++.++..+-..+++.+ +........ ..-..+|.+++.++..|...+...+-+|..+..
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~ 282 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEE-PVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKR 282 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 34444444444444556667777777777776542 121111111 122577999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 173 NVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVEL 241 (634)
Q Consensus 173 ~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eL 241 (634)
+|..+-..+.-........ .......+..+..|...+..++.....-..++..+...+..+
T Consensus 283 qi~~l~~~l~~~~~~~~~~--------~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 283 EIAQLEEQKEEEGSAKNGG--------PERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHhhccccccC--------cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877753221111100 011222344456666666666665555555566666665554
No 38
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=80.21 E-value=1.7e+02 Score=36.66 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHH
Q 045523 204 DVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYV 283 (634)
Q Consensus 204 ~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~l 283 (634)
.|.+..+....+.+..|+.++-.++- ++...+..+-+.|..=+--|+.-...+ ++| ++|.++| -|+.+
T Consensus 1175 kL~dAyl~eitKqIsaLe~e~PKnlt---dvK~missf~d~laeiE~LrnErIKkH---GaS----kePLDlS--DlDkL 1242 (1439)
T PF12252_consen 1175 KLYDAYLVEITKQISALEKEKPKNLT---DVKSMISSFNDRLAEIEFLRNERIKKH---GAS----KEPLDLS--DLDKL 1242 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCCchh---hHHHHHHHHHhhhhHHHHHHHHHhhcc---CCC----CCccchh--hHHHH
Confidence 34567788888888888876665555 445555555555533221222222222 233 4677764 68888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhh----hhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 045523 284 EGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVG----DFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSR 359 (634)
Q Consensus 284 e~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~----~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~sr 359 (634)
...|+++. ....+-||...|.-|..+=-+.|-.++.-. +.+..+.. ..|.++.-+....+|.++++++-..
T Consensus 1243 k~~LQ~iN---Q~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~--tlD~S~~a~Kqk~di~kl~~~lv~k 1317 (1439)
T PF12252_consen 1243 KGQLQKIN---QNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEK--TLDDSDTAQKQKEDIVKLNDFLVEK 1317 (1439)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 87665554 456778888888887777644432222222 22233322 3455677778888888888776544
Q ss_pred h
Q 045523 360 K 360 (634)
Q Consensus 360 K 360 (634)
.
T Consensus 1318 Q 1318 (1439)
T PF12252_consen 1318 Q 1318 (1439)
T ss_pred h
Confidence 4
No 39
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.04 E-value=1.1e+02 Score=36.83 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 045523 5 IKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRA------QLLRAIALSEAEVADICSTLGEQPGHC 78 (634)
Q Consensus 5 ~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~------~L~qsIa~~~~EL~~L~~eLge~~~~~ 78 (634)
+||.+|+.+-.+. .|.|-.+.+.++| +|..++=.++-..+...+ -|.-+.+.++..|..|-..|-+..-..
T Consensus 341 YLLgELkaLVaeq--~DsE~qRLitEvE-~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~ 417 (861)
T PF15254_consen 341 YLLGELKALVAEQ--EDSEVQRLITEVE-ACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAE 417 (861)
T ss_pred HHHHHHHHHHhcc--chHHHHHHHHHHH-HHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q ss_pred CCCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHH
Q 045523 79 DWTA--------------GGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQ 144 (634)
Q Consensus 79 ~~~~--------------~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e 144 (634)
...+ .++|-.||......+|.|+.+-++-++.+...+++-.+|...+-.. ..-.++
T Consensus 418 k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ek----------d~~l~~ 487 (861)
T PF15254_consen 418 KTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEK----------DQELLE 487 (861)
T ss_pred ccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 045523 145 RLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV---LGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQ 221 (634)
Q Consensus 145 ~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e---Lg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Le 221 (634)
.-..|..+..+++-|.++=+..|..+.-.+..--.+ ||+..+.--.||
T Consensus 488 ~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi----------------------------- 538 (861)
T PF15254_consen 488 NKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEI----------------------------- 538 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHH-----------------------------
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHH
Q 045523 222 EVKIQRMQKL-QHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVS 288 (634)
Q Consensus 222 eeK~~R~~kl-~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVe 288 (634)
.|+..+ ..|...+..|-.-|.++ .+.+--+ ++||...++.++.-++
T Consensus 539 ----~RL~eLtR~LQ~Sma~lL~dls~D--------~ar~Kp~---------~nLTKSLLniyEkqlQ 585 (861)
T PF15254_consen 539 ----ERLRELTRTLQNSMAKLLSDLSVD--------SARCKPG---------NNLTKSLLNIYEKQLQ 585 (861)
T ss_pred ----HHHHHHHHHHHHHHHHHhhhcccc--------ccccCCc---------chhHHHHHHHHHHhhc
No 40
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=79.93 E-value=95 Score=33.67 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 36 LAVYGRKIDDAKISRAQLLRAIALSEAEV-------ADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRK 108 (634)
Q Consensus 36 l~vyr~kVde~~~~K~~L~qsIa~~~~EL-------~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~ 108 (634)
++-+...+.+....+......+..+..-| ..+....|..+.... -..+|...+..|+..|+....-=..-.
T Consensus 74 i~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~--~~~~l~~~~~k~~~~L~~A~~sD~~l~ 151 (337)
T cd09234 74 IKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIA--HVTELKRELKKYKEAHEKASQSNTELH 151 (337)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchh--hHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555555555444444444333 334456665421100 245788899999999998887666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCC--CCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 109 NQFLQVLNQLQIISNEICPKD--NMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVN 175 (634)
Q Consensus 109 ~ef~el~~qI~~Lc~eL~~~~--~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~ 175 (634)
..|.....-+.-||.....-. .|.....+ .+-....+..|+..+..+..-+.+|...+..++..++
T Consensus 152 ~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~-~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 152 KAMNLHIANLKLLAGPLDELQKKLPSPSLLD-RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHHcCcHHHHHhhCCCccccC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666666654221000 01111111 1123466888888888888888888888888877655
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.82 E-value=2.1e+02 Score=37.53 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhHHHHhhchh--HHhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 045523 341 LLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNRVR--LISMLEDYSCMRQEKELERQRQKDHRKLQ 415 (634)
Q Consensus 341 LL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eEe~wLeEynr~r--Ll~~lee~~~~r~eKEeEK~r~R~~Kk~q 415 (634)
-++.+..+|.++...|-.=-.--+.+++-...|.+ |+++..++. +..+++++..++.++.+-+.+...+....
T Consensus 587 ~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~--~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i 661 (1486)
T PRK04863 587 QLEQLQARIQRLAARAPAWLAAQDALARLREQSGE--EFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEI 661 (1486)
T ss_pred HHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcch--hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444322222222222222221 333333333 34567888888888777777655444433
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.71 E-value=1.7e+02 Score=36.42 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=57.6
Q ss_pred ChhhhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 045523 2 FTPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWT 81 (634)
Q Consensus 2 ~~~~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~ 81 (634)
+..++|.+||.+.+-.+.=+.. ++-+.++|.++..++... ..-.+|.++++....+++-+-..+...+++
T Consensus 668 ~~a~~L~~l~~l~~~~~~~~~~-q~el~~le~eL~~le~~~-----~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~---- 737 (1174)
T KOG0933|consen 668 KGADLLRQLQKLKQAQKELRAI-QKELEALERELKSLEAQS-----QKFRDLKQQLELKLHELALLEKRLEQNEFH---- 737 (1174)
T ss_pred CcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcChHh----
Confidence 4567888888887655432221 222344554433333221 122345566666666666555555555443
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 82 AGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEI 125 (634)
Q Consensus 82 ~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL 125 (634)
-+.+.+..+...++++..+-.+-...++.....|..|-..+
T Consensus 738 ---~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~ 778 (1174)
T KOG0933|consen 738 ---KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKM 778 (1174)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334555556666666555555555555555555554444
No 43
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.27 E-value=35 Score=37.60 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 38 VYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQ 117 (634)
Q Consensus 38 vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~q 117 (634)
-||..++++...+..+...+.+....|..|-.+++-.-- =+.-+.+.|..+++.+..++.....++.+++.+
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~le--------kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLE--------KIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999999999998888875210 122234455555555555555555555555555
Q ss_pred HHHHH
Q 045523 118 LQIIS 122 (634)
Q Consensus 118 I~~Lc 122 (634)
.....
T Consensus 289 y~~~s 293 (359)
T PF10498_consen 289 YKQAS 293 (359)
T ss_pred HHHHh
Confidence 44444
No 44
>PRK09039 hypothetical protein; Validated
Probab=79.08 E-value=1e+02 Score=33.63 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045523 83 GGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSS 162 (634)
Q Consensus 83 ~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~ 162 (634)
..++..++..+...|...+....+-..++..+..||..|-..|+.-. ..+ +-+.++..+.+.+++.|+.+...
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le--~~L-----~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE--AAL-----DASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888899999999988888888888888888887765441 111 22344446666666666655544
Q ss_pred H----HHHHHHHHHHHH-HHHHHhCCChh-----hhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 045523 163 R----LRKVMKHLSNVN-SLCMVLGLDFK-----DTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQ 221 (634)
Q Consensus 163 R----l~kv~el~~~I~-~L~~eLg~df~-----~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Le 221 (634)
- ...+..++.++. .|-..+|.... +.+. +.....-+.++..|++.....|.....-|.
T Consensus 184 a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~~-~~~~vlF~~gsa~L~~~~~~~L~~ia~~l~ 251 (343)
T PRK09039 184 ALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRFV-FQSEVLFPTGSAELNPEGQAEIAKLAAALI 251 (343)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEEE-ecCCceeCCCCcccCHHHHHHHHHHHHHHH
Confidence 4 344555555543 22345544421 1000 010011124466788887777776655553
No 45
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=79.01 E-value=55 Score=37.06 Aligned_cols=149 Identities=18% Similarity=0.195 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---C---CCCCHHHHHHHHHHHHH
Q 045523 25 DKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDW---T---AGGNLRDKLKTITPLLE 98 (634)
Q Consensus 25 d~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~---~---~~~tL~eqL~~l~~~LE 98 (634)
...|..|+ |.++|-.+--++-..+.--.+-+-+...+|..=..+|-++.+.+-- + .-..|.+-++....+|.
T Consensus 330 q~~IqdLq--~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~Lq 407 (527)
T PF15066_consen 330 QNRIQDLQ--CSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQ 407 (527)
T ss_pred HHHHHHhh--hccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455664 8888866544444555555555555555555555555554443211 1 12345556788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCCCccc-cCCCCCC-----HHHHHHHH--------HHHHHHHHHH
Q 045523 99 DMRQRKIDRKNQFLQVLNQLQII----SNEICPKDNMYKII-EDEADLS-----EQRLKELR--------SQLAYLQEEK 160 (634)
Q Consensus 99 eLrk~K~eR~~ef~el~~qI~~L----c~eL~~~~~~~~~~-~d~~dLS-----~e~LeeLk--------~~L~~LqkEK 160 (634)
+-|++|+--.-+|+.++.--..| .++|-.....++.. --+..|| .++|..++ +-|+.|+.||
T Consensus 408 Esr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEK 487 (527)
T PF15066_consen 408 ESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREK 487 (527)
T ss_pred HHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887776654333 33332221100000 0122344 23444444 5677889999
Q ss_pred HHHHHHHHHHHHHHH
Q 045523 161 SSRLRKVMKHLSNVN 175 (634)
Q Consensus 161 s~Rl~kv~el~~~I~ 175 (634)
..|.++|..+..+..
T Consensus 488 e~~EqefLslqeEfQ 502 (527)
T PF15066_consen 488 ETREQEFLSLQEEFQ 502 (527)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888544
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.66 E-value=1.4e+02 Score=34.83 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 85 NLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEIC 126 (634)
Q Consensus 85 tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~ 126 (634)
-|+.+...|+.+|..++++.++=.--..+++.+++.|-.+|.
T Consensus 173 ~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 173 RLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445555566666666666666666666666777777766664
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=76.94 E-value=1.4e+02 Score=34.08 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 143 EQRLKELRSQLAYLQEEKSSRLRKVMKH 170 (634)
Q Consensus 143 ~e~LeeLk~~L~~LqkEKs~Rl~kv~el 170 (634)
..++..+...+..|+.++..=.....++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777776666666655444444433
No 48
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.02 E-value=2.3e+02 Score=35.95 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM 245 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L 245 (634)
+..|.--+..+.+.+++-..-...+.....++.+||.+|
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~ 1628 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRM 1628 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777777777888889999999988
No 49
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=75.70 E-value=1e+02 Score=31.81 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 045523 143 EQRLKELRSQL-AYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQ 221 (634)
Q Consensus 143 ~e~LeeLk~~L-~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Le 221 (634)
.++|++.-..+ ..+..|+..|...+.++.+.|..++..=... .-.+..-+++.+......|.
T Consensus 152 ~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~-----------------~e~f~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 152 LKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKG-----------------DEQFQNFVLEEIAALKNALA 214 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 4567899999999999999988887632110 11233567788888888899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045523 222 EVKIQRMQKLQHLATSLVE 240 (634)
Q Consensus 222 eeK~~R~~kl~~L~~~L~e 240 (634)
.+...|...=.++...|..
T Consensus 215 ~e~~~R~~~Dd~Iv~aln~ 233 (247)
T PF06705_consen 215 LESQEREQSDDDIVQALNH 233 (247)
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 9999999875555544443
No 50
>PF13514 AAA_27: AAA domain
Probab=74.42 E-value=2.5e+02 Score=35.58 Aligned_cols=259 Identities=15% Similarity=0.158 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLN 116 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~ 116 (634)
...+..+++.....+.+...++.+......+|..+|.| .. ...+...+.....-++........ ..++..+..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p-~~-----p~~~~~Wl~~~~~~~~~~~~~~~~-~~~~~~~~~ 632 (1111)
T PF13514_consen 560 EEARARLARAQARLAAAEAALAALEAAWAALWAAAGLP-LS-----PAEMRDWLARREAALEAAEELRAA-RAELEALRA 632 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CC-----hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34455555566666666777777777778888888843 22 134555544443333333222221 133444444
Q ss_pred HHHHHHHHhC----CCC--CCCccccC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 045523 117 QLQIISNEIC----PKD--NMYKIIED-------EADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSN-------VNS 176 (634)
Q Consensus 117 qI~~Lc~eL~----~~~--~~~~~~~d-------~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~-------I~~ 176 (634)
....++..|. ... .++...+. ...=...+++.+...+..++.+...+...+...... ...
T Consensus 633 ~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 712 (1111)
T PF13514_consen 633 RRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQE 712 (1111)
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444332 211 01100000 000011233344444444444444444433333333 333
Q ss_pred HHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-
Q 045523 177 LCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMA---TTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQ- 252 (634)
Q Consensus 177 L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~---~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr- 252 (634)
.+..+|.+..-....+. . ..+.+..+. ..+..++.....-...+..+...+..||..++.+....
T Consensus 713 ~l~~~gL~~~~~~~~~~----------~-~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~ 781 (1111)
T PF13514_consen 713 ALAELGLPADASPEEAL----------E-ALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDP 781 (1111)
T ss_pred HHHhCCCCCCCCHHHHH----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCc
Confidence 44445555321010000 0 123333333 33344444334444556778899999999998842110
Q ss_pred --HHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhh
Q 045523 253 --EMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTET 322 (634)
Q Consensus 253 --~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~ee 322 (634)
..+......+.. ..-....+..+..++..++.-... +..-+...+.++..|+...++...+
T Consensus 782 ~~~~~~~L~~~l~~--------a~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~~~a~~~~~e 844 (1111)
T PF13514_consen 782 AEEALEALRARLEE--------AREAQEERERLQEQLEELEEELEQ-AEEELEELEAELAELLEQAGVEDEE 844 (1111)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCHH
Confidence 222211111100 000012333334444444333332 3333445677778888877665543
No 51
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.30 E-value=2.1e+02 Score=34.63 Aligned_cols=118 Identities=10% Similarity=0.095 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 104 KIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGL 183 (634)
Q Consensus 104 K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~ 183 (634)
-++|++++.+-++.+.+=|+.+-.... .....+|..+ .++..+|+.++.+...=...+..++..+......+.
T Consensus 598 LaeR~e~a~d~Qe~L~~R~~~vl~~l~-----~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~- 670 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLMKRVDRVLQLLN-----SQLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE- 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 356677777777766665554433211 1123477655 455555555555432111112222222222111111
Q ss_pred ChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 184 DFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSL 238 (634)
Q Consensus 184 df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L 238 (634)
-.+.. ...+..|+..-...+...+.+.-++-.+-+++++.+...+
T Consensus 671 -~~~~~---------~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 671 -SQKSP---------KKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred -ccccc---------cCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 0125578888888888888887776666666666665443
No 52
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.16 E-value=1.8e+02 Score=33.84 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 89 KLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIIS 122 (634)
Q Consensus 89 qL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc 122 (634)
.+..++..+++++....++.+++..++.++..|-
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666665554
No 53
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=74.10 E-value=2.3e+02 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 40 GRKIDDAKISRAQLLRAIALSEAEVADICST 70 (634)
Q Consensus 40 r~kVde~~~~K~~L~qsIa~~~~EL~~L~~e 70 (634)
...+++.+.....+...+..+..++..+-..
T Consensus 683 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 713 (1179)
T TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEE 713 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.62 E-value=1.4e+02 Score=32.30 Aligned_cols=79 Identities=13% Similarity=-0.017 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCC-------CCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 49 SRAQLLRAIALSEAEVADICSTLGEQPGH-------CDWTAGGNLRDKLKTITP--LLEDMRQRKIDRKNQFLQVLNQLQ 119 (634)
Q Consensus 49 ~K~~L~qsIa~~~~EL~~L~~eLge~~~~-------~~~~~~~tL~eqL~~l~~--~LEeLrk~K~eR~~ef~el~~qI~ 119 (634)
....|.+.|.+.+.-+..+-.++...+.+ ..++....+..|+..++. +++.-..-++=|++-+..++..++
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~ 155 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLE 155 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666655543211 011112344455555443 344444456677777777777776
Q ss_pred HHHHHhCC
Q 045523 120 IISNEICP 127 (634)
Q Consensus 120 ~Lc~eL~~ 127 (634)
.-.+.|-.
T Consensus 156 ~~~~~L~~ 163 (325)
T PF08317_consen 156 ENLELLQE 163 (325)
T ss_pred HHHHHHHH
Confidence 66665543
No 55
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=73.60 E-value=1.4e+02 Score=32.53 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCC-CCCCHHHH---------HHHHHHHHHHHH
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHC---DWT-AGGNLRDK---------LKTITPLLEDMR 101 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~---~~~-~~~tL~eq---------L~~l~~~LEeLr 101 (634)
...+|+...++. .++.+...|..+..++......|++|..-. .+. -+.+|.+. +..|...+.+|.
T Consensus 7 a~s~Y~erk~~l--Vr~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~ 84 (353)
T cd09236 7 AISIYDDRKDRL--VNESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDVA 84 (353)
T ss_pred HHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 457788776654 556667888889999999999999874211 010 12244442 223334444444
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhCCCCC--CCccccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 102 QRK---IDRKNQFLQVLNQLQIISNEICPKDN--MYKIIEDEADLS---EQRLKELRSQLAYLQEEKSSRLRKVMKHLSN 173 (634)
Q Consensus 102 k~K---~eR~~ef~el~~qI~~Lc~eL~~~~~--~~~~~~d~~dLS---~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~ 173 (634)
+.+ .+.+.+...+......=|..+..... .+.. .+...++ -.++..|+..|+.-..-= ..+......
T Consensus 85 ~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr-~~S~~~~~~l~~~~~~~~~~L~~A~~sD----~~v~~k~~~ 159 (353)
T cd09236 85 RLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTR-PDSHEANPKLYTQAAEYEGYLKQAGASD----ELVRRKLDE 159 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHH
Confidence 333 44444444444444444444433210 1111 1111222 134444444444322221 233344444
Q ss_pred HHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 174 VNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLV 239 (634)
Q Consensus 174 I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 239 (634)
+......|..+... +....|+.........+ ...+..|...+.+|+..+.+|..-+++|+..++
T Consensus 160 ~~~~l~lL~~~~~~-l~~~~Ps~~~~~~~~~~-~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 160 WEDLIQILTGDERD-LENFVPSSRRPSIPPEL-ERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHcCCHHH-HHHhCCCCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556555544 33334653321111122 467999999999999999999999999987655
No 56
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=73.51 E-value=2.6e+02 Score=35.51 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 045523 205 VSNDTIEKMATTIQSLQEVKIQRMQKLQHLAT-SLVELWN 243 (634)
Q Consensus 205 LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~-~L~eLW~ 243 (634)
-+.+++.++...+.++++++..+++...+... .+.-.|+
T Consensus 634 sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e 673 (1317)
T KOG0612|consen 634 SLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLE 673 (1317)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888888888877655 4444443
No 57
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.37 E-value=2.5e+02 Score=35.09 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLN 116 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~ 116 (634)
++|...|++++.--+-|+.+-.-++++|+.+-..=---.+. ..-.+++++++.++.+....+.+-++-+.+...++.
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tle---seiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLE---SEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888889998885532111111 023456666666666666666666666655555555
Q ss_pred HHHHH
Q 045523 117 QLQII 121 (634)
Q Consensus 117 qI~~L 121 (634)
+-+.|
T Consensus 337 q~eqL 341 (1195)
T KOG4643|consen 337 QKEQL 341 (1195)
T ss_pred HHHHh
Confidence 54444
No 58
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.21 E-value=1.9e+02 Score=33.75 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 51 AQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDK-------LKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISN 123 (634)
Q Consensus 51 ~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eq-------L~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~ 123 (634)
.-+-..|+++++....|..-|.+..-. +...-+|++. ...++..+..|..++..+-+.+..++.+|..--.
T Consensus 231 ~~i~~~ie~l~~~n~~l~e~i~e~ek~--~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEe 308 (581)
T KOG0995|consen 231 TSIANEIEDLKKTNRELEEMINEREKD--PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEE 308 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344556677776666666555532111 1122344443 4566777778888888887777777776655444
Q ss_pred Hh
Q 045523 124 EI 125 (634)
Q Consensus 124 eL 125 (634)
++
T Consensus 309 E~ 310 (581)
T KOG0995|consen 309 EI 310 (581)
T ss_pred HH
Confidence 33
No 59
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.01 E-value=1.7e+02 Score=33.10 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCC-CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 41 RKIDDAKISRAQLLRAIALSEAEVADICSTLGEQP-GHC-DWT-AGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQ 117 (634)
Q Consensus 41 ~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~-~~~-~~~-~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~q 117 (634)
..+.+.+.........++..++.+..|-..++..+ ... ... ....+..++..++.++..+....-+..-.+.+++.+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 34455555556666667777777777877777432 211 011 345788999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 118 LQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVL 181 (634)
Q Consensus 118 I~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eL 181 (634)
|..+-..+........-...........+..+...+..++.+...-..++..+...+..+-..+
T Consensus 284 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 284 IAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred HHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887744311000000001111122455666666666666655555666666555554443
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.58 E-value=1.3e+02 Score=31.68 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLN 116 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~ 116 (634)
.-+++.|+.....++++.-.+..+..++..+-..+-..-- ....+...+..++..++.....+.+--.++..++.
T Consensus 57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~-----~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA-----ERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 4567888888888888888888888888777554443100 11233334455555555554444444444444444
Q ss_pred HH
Q 045523 117 QL 118 (634)
Q Consensus 117 qI 118 (634)
++
T Consensus 132 El 133 (312)
T PF00038_consen 132 EL 133 (312)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 61
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.66 E-value=3.5e+02 Score=36.08 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 33 QECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFL 112 (634)
Q Consensus 33 qecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~ 112 (634)
.+-++.|++.++........|...|...+..++.+..+|-.. ...++.+...|+.|+.++.-+..-+.
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a------------~~k~~~le~ev~~LKqE~~ll~~t~~ 762 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSA------------NEKLEKLEAELSNLKQEKLLLKETEE 762 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998888653 23577889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-CCcc--ccCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 045523 113 QVLNQLQIISNEICPKDN-MYKI--IEDEADLS-EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDF 185 (634)
Q Consensus 113 el~~qI~~Lc~eL~~~~~-~~~~--~~d~~dLS-~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df 185 (634)
.+..+...||.+..+--. .... .....--| .+.-..+..++..|..+...=.+++.+-...++.+-..+..+.
T Consensus 763 rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l 839 (1822)
T KOG4674|consen 763 RLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQL 839 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999987754311 0000 00011111 1222234444444444444444445555555555544444443
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=71.12 E-value=2.1e+02 Score=33.38 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 90 LKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLS--EQRLKELRSQLAYLQEEKSSRLRKV 167 (634)
Q Consensus 90 L~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS--~e~LeeLk~~L~~LqkEKs~Rl~kv 167 (634)
+...+.-|++-.+.+..-..+|..+..++..+-..+....... .....++. ...|..+...+..++..+..=..++
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~--~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKER--RGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4556666666666666666677777777666655443321000 00001111 2334444444444444444444444
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 168 MKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSL 238 (634)
Q Consensus 168 ~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L 238 (634)
..++.++..|+..|+---...-. ...+-.+.-.+.+.++++|.-.+......|.+++...
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~-----------Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDD-----------ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44555555554444211000000 1112234445555556666655555555555544433
No 63
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.99 E-value=1.6e+02 Score=31.62 Aligned_cols=122 Identities=11% Similarity=0.191 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 39 YGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQL 118 (634)
Q Consensus 39 yr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI 118 (634)
++.-+++.+..|+.+.+.+....++-..+-....+-.- ...++.++.+.+..++.+++..+.+--..+..+...+
T Consensus 18 lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e-----~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 18 LKEEIEELKEKRDELRKEASELAEKRDELNAKVRELRE-----KAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666665555555555443333110 2345666666777777777666666555555555555
Q ss_pred HHHHHHhCCCCC---CCc----------cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 119 QIISNEICPKDN---MYK----------IIEDEADLSEQRLKELRSQLAYLQEEKSSRLR 165 (634)
Q Consensus 119 ~~Lc~eL~~~~~---~~~----------~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~ 165 (634)
..+-..+++... +.. ......+||.+.=..+-..+..|++++..+.+
T Consensus 93 ~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k 152 (294)
T COG1340 93 RELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544432200 110 01134566666666666666666666655543
No 64
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=69.56 E-value=1.4e+02 Score=32.34 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHhhhCCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 045523 4 PIKFRPNSKIWDEVGESDNER------DKMILEIEQECLAVYGRKIDDAKISRAQLLRA----------IALSEAEVADI 67 (634)
Q Consensus 4 ~~lL~eLq~IWdEIG~~e~eR------d~ml~~lEqecl~vyr~kVde~~~~K~~L~qs----------Ia~~~~EL~~L 67 (634)
++++.+|..+=.|+|.|...= ++. .. ...|+.++.=.+.|....|--..+. -.....++..+
T Consensus 61 ~~f~~Els~~L~El~CPy~~L~~G~~~~rl-~~-~~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~~i 138 (318)
T PF10239_consen 61 ESFLLELSGFLKELGCPYSALTSGDISDRL-QS-KEDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELKAI 138 (318)
T ss_pred HHHHHHHHHHHHhcCCCcHHHcCCcchhhh-cC-HHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHHHH
Confidence 467888999999999886631 111 11 1123333333333333222211111 23445689999
Q ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHH
Q 045523 68 CSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLK 147 (634)
Q Consensus 68 ~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~Le 147 (634)
|..||.+... .+.+..+.+..|..+++++- ..+.... -..+ .-...||.++.+
T Consensus 139 ~~~L~l~~p~----~~i~~~~lf~~i~~ki~~~L---------------------~~lp~~~-~~~P-Ll~~~L~~~Qw~ 191 (318)
T PF10239_consen 139 CQALGLPKPP----PNITASQLFSKIEAKIEELL---------------------SKLPPGH-MGKP-LLKKSLTDEQWE 191 (318)
T ss_pred HHHhCCCCCC----CCCCHHHHHHHHHHHHHHHH---------------------HhcCccc-cCCC-CcCCCCCHHHHH
Confidence 9999997543 45677777777766665542 2232221 1122 236789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045523 148 ELRSQLAYLQEEKSSRLRKVMK 169 (634)
Q Consensus 148 eLk~~L~~LqkEKs~Rl~kv~e 169 (634)
.|...-+.|.+||.-|.+-+..
T Consensus 192 ~Le~i~~~L~~EY~~RR~mLlk 213 (318)
T PF10239_consen 192 KLEKINQALSKEYECRRQMLLK 213 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 65
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.42 E-value=1.7e+02 Score=31.65 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 045523 20 SDNERDKMILEIEQECLAVYGRK----------IDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDK 89 (634)
Q Consensus 20 ~e~eRd~ml~~lEqecl~vyr~k----------Vde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eq 89 (634)
+++.|..|-.++. .+.-|-|. ..-.+..+..|...+..++.+...|...+..=..... .|.+.
T Consensus 108 ~~d~r~lm~~Qf~--lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~-----~l~~~ 180 (312)
T smart00787 108 SPDVKLLMDKQFQ--LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKP-----KLRDR 180 (312)
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 90 LKTITPLLEDMRQRKIDRKN----QFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLR 165 (634)
Q Consensus 90 L~~l~~~LEeLrk~K~eR~~----ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~ 165 (634)
.+.|...+..|+....+--. ++..++++|.....++... ..++.+++.+++.+......-..
T Consensus 181 ~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~--------------~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 181 KDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIK--------------VKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred HHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 045523 166 KVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEV 223 (634)
Q Consensus 166 kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Leee 223 (634)
+..++..+|..+-..+ ..+.+.|..-+..|...++.|+..
T Consensus 247 ~k~e~~~~I~~ae~~~------------------~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 247 KKSELNTEIAEAEKKL------------------EQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHH------------------HhcCCCCHHHHHHHHHHHHHHHHH
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.05 E-value=2.7e+02 Score=33.82 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045523 100 MRQRKIDRKNQFLQVLNQLQIISNEICPK 128 (634)
Q Consensus 100 Lrk~K~eR~~ef~el~~qI~~Lc~eL~~~ 128 (634)
++.+|..+..++..|..+++.|...|+..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 67778888899999999999999888765
No 67
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=68.61 E-value=3.3e+02 Score=34.66 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhchH
Q 045523 344 QIDLQIAKAKEEASSRKE 361 (634)
Q Consensus 344 ~~E~EI~rLKe~~~srK~ 361 (634)
..+..|.+++.......+
T Consensus 946 ~~~~~i~~le~~i~~lg~ 963 (1163)
T COG1196 946 ELEREIERLEEEIEALGP 963 (1163)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 455666666666443333
No 68
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=68.01 E-value=1.7e+02 Score=33.11 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCC-CHHHHHHHHHHHHHHH
Q 045523 143 EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDV-SNDTIEKMATTIQSLQ 221 (634)
Q Consensus 143 ~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~L-S~~~L~~L~~~l~~Le 221 (634)
...+..|+..|..|+.-+..-...+...+..|..-... |... +... .+.+=..+..-..+|.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~----~k~~-------------s~~~~~~~~R~~~~~~k~~L~ 212 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKK----VKSA-------------STNASGDSNRAYMESGKKKLS 212 (424)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------------hccccccchhHHHHHHHHHHH
Confidence 45666666666666665555544444444332221111 1110 1111 1233344444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045523 222 EVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKEL 301 (634)
Q Consensus 222 eeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeL 301 (634)
..-..-..++.+|...+..| |.... .+|+.++ ..-++.+..++.++..-= +.|+.+
T Consensus 213 ~~sd~Ll~kVdDLQD~VE~L----------RkDV~--~RgvRp~-----------~~qle~v~kdi~~a~~~L-~~m~~~ 268 (424)
T PF03915_consen 213 EESDRLLTKVDDLQDLVEDL----------RKDVV--QRGVRPS-----------PKQLETVAKDISRASKEL-KKMKEY 268 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHH--HH----------------HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHH--HcCCcCC-----------HHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55444455555555555443 23332 3444433 778888888888774432 248888
Q ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 045523 302 VLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKW 369 (634)
Q Consensus 302 I~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw 369 (634)
|...+--...+|.... +.+ ..-.+.|...|.-+..|++-+..-.++|.+|+++
T Consensus 269 i~~~kp~WkKiWE~EL-------~~V--------~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 269 IKTEKPIWKKIWESEL-------QKV--------CEEQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHH-------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH-------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777887541 000 0114556667777888888888888999999987
No 69
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.81 E-value=2.2e+02 Score=32.21 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045523 27 MILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKID 106 (634)
Q Consensus 27 ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~e 106 (634)
-+.++.++ +.-....+.+....++.|.+.|++.+.++..|-.+|-..... ..-+.+.++.+...++.|..++.+
T Consensus 39 ~l~q~q~e-i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~-----l~~~~~~I~~~~~~l~~l~~q~r~ 112 (420)
T COG4942 39 QLKQIQKE-IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD-----LKKLRKQIADLNARLNALEVQERE 112 (420)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444433 244677888888999999999999999999999888764321 234556688888888888888866
Q ss_pred HHHHHHHHHHH
Q 045523 107 RKNQFLQVLNQ 117 (634)
Q Consensus 107 R~~ef~el~~q 117 (634)
|...+..+..-
T Consensus 113 qr~~La~~L~A 123 (420)
T COG4942 113 QRRRLAEQLAA 123 (420)
T ss_pred HHHHHHHHHHH
Confidence 65555554443
No 70
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=67.20 E-value=2.5e+02 Score=32.66 Aligned_cols=242 Identities=14% Similarity=0.184 Sum_probs=113.6
Q ss_pred hHHHHHHHHhhhCCChHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 045523 6 KFRPNSKIWDEVGESDNE--------RDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGH 77 (634)
Q Consensus 6 lL~eLq~IWdEIG~~e~e--------Rd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~ 77 (634)
+=.+|..||.++..=++- =..+|...+ +-+..++..+++.=..-+.+.+.+=.--..|..=|..|-+..++
T Consensus 169 lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~e-e~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~ 247 (570)
T COG4477 169 LEKKLENIEEELSQFVELTSSGDYIEAREVLEEAE-EHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYH 247 (570)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCC
Confidence 345677777766421111 122333332 23334444444443333333333333333344444555554444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHH
Q 045523 78 CDWTAGGNLRDKLKTITPLLEDMRQ-----RKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQ 152 (634)
Q Consensus 78 ~~~~~~~tL~eqL~~l~~~LEeLrk-----~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~ 152 (634)
.. ...+..++..+..++..+.. .-++--.++..+++.|+.+.+.|.+.-.-........+...+.|...+..
T Consensus 248 l~---~~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~ 324 (570)
T COG4477 248 LE---HVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKEN 324 (570)
T ss_pred cc---cccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 43 24444444444444443322 23344456777888888888888654110011112234445666666665
Q ss_pred HHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhCCChh---hhhhhccCCCCCCCCCCCCCHHH
Q 045523 153 LAYLQEEKS--------------------SRLRKVMKHLSNVNSLCMVLGLDFK---DTVCKIHPTLNDPKASKDVSNDT 209 (634)
Q Consensus 153 L~~LqkEKs--------------------~Rl~kv~el~~~I~~L~~eLg~df~---~~v~evhpsl~d~~~s~~LS~~~ 209 (634)
...|+.|.. .+++.+.+....|......-.+.|. +.+.++-.. -.+| .+.
T Consensus 325 n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~------l~~i-~~~ 397 (570)
T COG4477 325 NEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKA------LTDI-EDE 397 (570)
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH------HHHH-hhh
Confidence 555555542 2222222222222222222222331 111111000 0011 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhh
Q 045523 210 IEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM------DTPLEEQEMFHNI 258 (634)
Q Consensus 210 L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L------~ip~eEr~~F~~~ 258 (634)
...++..+..|++.-.+=.+.+..+..+|+..-.+| |+|+.....|.+.
T Consensus 398 q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~ 452 (570)
T COG4477 398 QEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTA 452 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhh
Confidence 555666666666666555566677777777766555 7898888888654
No 71
>PRK10869 recombination and repair protein; Provisional
Probab=67.17 E-value=2.5e+02 Score=32.72 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 88 DKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIIS 122 (634)
Q Consensus 88 eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc 122 (634)
+.+..+..++++++....+|.+++.-++-|++.|-
T Consensus 164 ~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 164 QLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777664
No 72
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.79 E-value=3.6e+02 Score=34.32 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 148 ELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLG 182 (634)
Q Consensus 148 eLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg 182 (634)
.++.+...+..+..++.++.......|......+.
T Consensus 349 ~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~k 383 (1293)
T KOG0996|consen 349 GLKDENEKFDIESNEEVEKNEAVKKEIKERAKELK 383 (1293)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666777777777776666555543
No 73
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.50 E-value=1.7e+02 Score=30.41 Aligned_cols=34 Identities=12% Similarity=0.371 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKLQHLATSLVEL 241 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eL 241 (634)
..|..+.++...|..+|..+.+.|+.+-..|..|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888888889888888888777777653
No 74
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.94 E-value=4.1e+02 Score=34.35 Aligned_cols=67 Identities=9% Similarity=0.049 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 52 QLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQII 121 (634)
Q Consensus 52 ~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~L 121 (634)
++.+.+.+++.++..|-.++...... . ..-.|...+..+...++.++.....-..++..++.+|..|
T Consensus 796 r~~~ei~~l~~qie~l~~~l~~~~~~-~--s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 796 RFQMELKDVERKIAQQAAKLQGSDLD-R--TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccc-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888753221 0 1122444455555555555444444444444444444444
No 75
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.75 E-value=1.2e+02 Score=29.27 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 50 RAQLLRAIALSEAEVADICSTLGEQP-GHCDWT-AGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICP 127 (634)
Q Consensus 50 K~~L~qsIa~~~~EL~~L~~eLge~~-~~~~~~-~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~ 127 (634)
|+.+.+.+..+..+=.-++...|=.. |...+. -+..-.+.+..+...+.+|+.+-.+-..+...+..++..|...
T Consensus 32 K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~--- 108 (169)
T PF07106_consen 32 KTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE--- 108 (169)
T ss_pred HHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 34444444444444444444555222 222222 1222344567777777777765555555555555554444422
Q ss_pred CCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCH
Q 045523 128 KDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSN 207 (634)
Q Consensus 128 ~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~ 207 (634)
||.+ ++...+..|+.+...-..++..+.. +...+|.
T Consensus 109 -------------~t~~---el~~~i~~l~~e~~~l~~kL~~l~~----------------------------~~~~vs~ 144 (169)
T PF07106_consen 109 -------------PTNE---ELREEIEELEEEIEELEEKLEKLRS----------------------------GSKPVSP 144 (169)
T ss_pred -------------CCHH---HHHHHHHHHHHHHHHHHHHHHHHHh----------------------------CCCCCCH
Confidence 3333 3445555555553332222222221 1234778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKL 231 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl 231 (634)
+-+..+......+..+-..|...|
T Consensus 145 ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 145 EEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999988888888877776543
No 76
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.70 E-value=2e+02 Score=30.59 Aligned_cols=146 Identities=23% Similarity=0.316 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045523 85 NLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRL 164 (634)
Q Consensus 85 tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl 164 (634)
++-..+..=...+.++.+.+..-..++..+..+|..+...+... ..+.+=+...+..|+..|..+.+...+|.
T Consensus 28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~-------~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL-------QKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666677788888888888888888888888888777544 12335578899999999999999999999
Q ss_pred HHHHHHHHHHH------HHHHHh--CCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 165 RKVMKHLSNVN------SLCMVL--GLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLAT 236 (634)
Q Consensus 165 ~kv~el~~~I~------~L~~eL--g~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~ 236 (634)
..|..-.+.+. .+.+++ .-+|.+.|..+.. + ..-.+-....|+.+...-..|++.+..-..+++.|..
T Consensus 101 ~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtA-i---~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~a 176 (265)
T COG3883 101 ELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTA-I---SVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVA 176 (265)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHH-H---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888766 344443 2345554433200 0 0001122456777777777777777666666665554
Q ss_pred HHHHH
Q 045523 237 SLVEL 241 (634)
Q Consensus 237 ~L~eL 241 (634)
-..+|
T Consensus 177 l~~e~ 181 (265)
T COG3883 177 LQNEL 181 (265)
T ss_pred HHHHH
Confidence 44433
No 77
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.69 E-value=3.6e+02 Score=33.66 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchH
Q 045523 282 YVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKE 361 (634)
Q Consensus 282 ~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~ 361 (634)
++..|++++...|. ...++|.|+.+--+.++..++. .|.. |.+.-..+|+..+..=-..++.+-..+|-
T Consensus 906 ~~dKe~Ek~~~rk~-----~Ll~KreE~~ekIr~lG~Lp~d--af~k----y~~~~~~el~kkL~~~neelk~ys~VNKk 974 (1200)
T KOG0964|consen 906 NFDKELEKLVRRKH-----MLLKKREECCEKIRELGVLPED--AFEK----YQDKKSKELMKKLHRCNEELKGYSNVNKK 974 (1200)
T ss_pred hhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCchH--HHHH----hccCCHHHHHHHHHHHHHHHhhcchhhHH
Confidence 34466666655543 3344777777777777887765 3433 33456678887777777777777777776
Q ss_pred HHHHHHHH
Q 045523 362 ILEKVEKW 369 (634)
Q Consensus 362 Ile~Vekw 369 (634)
-|+-...|
T Consensus 975 AldQf~nf 982 (1200)
T KOG0964|consen 975 ALDQFVNF 982 (1200)
T ss_pred HHHHHHHH
Confidence 55544443
No 78
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.95 E-value=70 Score=33.02 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQ 252 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr 252 (634)
++.|..|.....+|++....+.-++.+|..+..+|-..+..|++++
T Consensus 169 ~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 169 QERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 5778888899999988888888889999999888888888887764
No 79
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.90 E-value=3.7e+02 Score=33.55 Aligned_cols=184 Identities=16% Similarity=0.243 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHH
Q 045523 209 TIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVS 288 (634)
Q Consensus 209 ~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVe 288 (634)
.|..|....++++.....-+++.-.|--++..|-+..--..+.|..-.++...+. +-|..-+.|+.
T Consensus 280 ~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~--------------~ki~e~~~EL~ 345 (1200)
T KOG0964|consen 280 KLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVK--------------DKIEEKKDELS 345 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHH--------------HHHHHHHHHHH
Confidence 3444555555555555555555666666777777777666666766666665542 34555555555
Q ss_pred HHHHHHHH------hHHHHHHHHHHHHHHHHHhc-----CCChhhhhhhhhHhhh---cCCCCHHHHHHHHHHHHHHHHH
Q 045523 289 RLEQLKSS------KMKELVLKKKLELAEILRKM-----HTVTETVGDFSIEAIE---SGSMDFMDLLEQIDLQIAKAKE 354 (634)
Q Consensus 289 RLeeLK~~------~mkeLI~k~R~ELeeLWdk~-----~~s~eer~~F~~~~id---sg~~D~EeLL~~~E~EI~rLKe 354 (634)
..+-.+.+ ..+.=|...+.+..+|+.+- |-+-++|..|+..-|. .+..|.-+.-+.+..+|..++.
T Consensus 346 ~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~ 425 (1200)
T KOG0964|consen 346 KIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLES 425 (1200)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 54443322 23333334455555566553 3455777777653322 1222222333333445555544
Q ss_pred HHHhchHHHHHHHHHHHHhhhhhHHHHhhchhHHhhHHHHHHHHHHHHHHHHH----HHhhhhhHH
Q 045523 355 EASSRKEILEKVEKWFTAREEESWLEEYNRVRLISMLEDYSCMRQEKELERQR----QKDHRKLQV 416 (634)
Q Consensus 355 ~~~srK~Ile~Vekw~sl~eEe~wLeEynr~rLl~~lee~~~~r~eKEeEK~r----~R~~Kk~q~ 416 (634)
.+. .+++.+.+...-..| ++.|+-.-...+..+.+++++.-.+ -|+.++++.
T Consensus 426 ~l~---~~~e~i~~l~~si~e-------~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~ 481 (1200)
T KOG0964|consen 426 ELK---EKLEEIKELESSINE-------TKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRS 481 (1200)
T ss_pred HHH---HHHHHHHHHHhhHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 334444444222221 2234444444555555555544222 134555553
No 80
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.58 E-value=4.1e+02 Score=33.92 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045523 277 MNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILR 314 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWd 314 (634)
..++.+...++..++++|+.++..+-......++--|+
T Consensus 636 ~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e 673 (1317)
T KOG0612|consen 636 EETLKAGKKELLKVEELKRENQERISDSEKEALEIKLE 673 (1317)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888888888887776544434444444
No 81
>PRK03918 chromosome segregation protein; Provisional
Probab=63.41 E-value=3.4e+02 Score=32.95 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 20 SDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVAD 66 (634)
Q Consensus 20 ~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~ 66 (634)
+..+|.+++..+- =++.|....+.+......+...+..+...+..
T Consensus 143 ~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (880)
T PRK03918 143 SDESREKVVRQIL--GLDDYENAYKNLGEVIKEIKRRIERLEKFIKR 187 (880)
T ss_pred CcHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665543 12456565555555555555555555544433
No 82
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.32 E-value=1.4e+02 Score=30.97 Aligned_cols=94 Identities=7% Similarity=0.123 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045523 31 IEQECLAVYGRKIDDAKISRAQL-----LRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKI 105 (634)
Q Consensus 31 lEqecl~vyr~kVde~~~~K~~L-----~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~ 105 (634)
|=..+.+-++.+|-..+.+|--+ +-.+.-.++||..-.-.-|.......+ .-+-|++.+..++.+++++.++|.
T Consensus 74 LA~kf~eeLrg~VGhiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~-~~~d~ke~~ee~kekl~E~~~Eke 152 (290)
T COG4026 74 LAEKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVP-EYMDLKEDYEELKEKLEELQKEKE 152 (290)
T ss_pred HHHHHHHHHHHhhhhhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666666555544211 122333344443332222332221111 235788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 045523 106 DRKNQFLQVLNQLQIISNEI 125 (634)
Q Consensus 106 eR~~ef~el~~qI~~Lc~eL 125 (634)
+-++++.+++.+....-+.|
T Consensus 153 eL~~eleele~e~ee~~erl 172 (290)
T COG4026 153 ELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888888776665554
No 83
>PRK09039 hypothetical protein; Validated
Probab=62.14 E-value=2.4e+02 Score=30.80 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 045523 51 AQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDN 130 (634)
Q Consensus 51 ~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~ 130 (634)
..+-+.++.++.+|..|...|+..-. ....|-+.+..++.+++.++..+.. ++..+.. ...
T Consensus 49 ~~~~~eL~~L~~qIa~L~e~L~le~~-----~~~~l~~~l~~l~~~l~~a~~~r~~-------Le~~~~~----~~~--- 109 (343)
T PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQ-----GNQDLQDSVANLRASLSAAEAERSR-------LQALLAE----LAG--- 109 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhh----hhh---
Confidence 44556667777777777777776432 3456777777777777766665542 2222221 111
Q ss_pred CCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 131 MYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV 180 (634)
Q Consensus 131 ~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e 180 (634)
....-..++..+...|..++.+..+-..+|.-+..+|..|-..
T Consensus 110 -------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 110 -------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred -------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1123356777788888888888888888888888877776554
No 84
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.81 E-value=3.7e+02 Score=32.85 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045523 26 KMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKI 105 (634)
Q Consensus 26 ~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~ 105 (634)
++..+++ ..||+.|...+..+..+..+|..++-.+..+-.++.-=.. .-.-+.++++.-...||.++.+-.
T Consensus 81 ~vstqet----riyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~-----ti~~~q~d~ke~etelE~~~srlh 151 (1265)
T KOG0976|consen 81 KVSTQET----RIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD-----TIQGAQDDKKENEIEIENLNSRLH 151 (1265)
T ss_pred hhhHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555 6777777777666666666666555554444332221000 001222234444445555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 045523 106 DRKNQFLQVLNQLQIISNEIC 126 (634)
Q Consensus 106 eR~~ef~el~~qI~~Lc~eL~ 126 (634)
+-.+++..-..+|..+-+.|.
T Consensus 152 ~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 152 KLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHHHHHhhhhHHHHHHHHHHh
Confidence 444555555555555554443
No 85
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.87 E-value=3.4e+02 Score=32.09 Aligned_cols=140 Identities=17% Similarity=0.258 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc-----cccCCCCCC----HHHHHHHHHHHHH
Q 045523 85 NLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYK-----IIEDEADLS----EQRLKELRSQLAY 155 (634)
Q Consensus 85 tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~-----~~~d~~dLS----~e~LeeLk~~L~~ 155 (634)
+|.+.+..++.....-..+....+.+++.+..+++.+..++......+. ..--..+.+ ..++-++-..+..
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~K 502 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRK 502 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHH
Confidence 4444444444444444444456677777888888888777754421000 000112344 4667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChh---hhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 156 LQEEKSSRLRKVMKHLSNVNSLCMVLGLDFK---DTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQ 232 (634)
Q Consensus 156 LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~---~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~ 232 (634)
.+.+...=+.....+..+|..+-..|.-.|. +.+... .+ .++...+.-+.+..|.+.-.+-...++
T Consensus 503 Qk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrd---------AK--kDe~~rkaYK~La~lh~~c~~Li~~v~ 571 (594)
T PF05667_consen 503 QKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRD---------AK--KDEAARKAYKLLASLHENCSQLIETVE 571 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------hh--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888899999999999988872 222221 11 345555566666666555555555555
Q ss_pred HHH
Q 045523 233 HLA 235 (634)
Q Consensus 233 ~L~ 235 (634)
+.+
T Consensus 572 ~tG 574 (594)
T PF05667_consen 572 ETG 574 (594)
T ss_pred Hhh
Confidence 443
No 86
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=59.92 E-value=2.4e+02 Score=32.54 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHH
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNL---MDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYV 283 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~---L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~l 283 (634)
|..+..++..++.+-.+-.+.++..-.|...|..+=.+ +-+..+++......+ .|.=+++
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~-----------------~da~~ql 273 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY-----------------KDAQRQL 273 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------------HhhHHHH
Confidence 44444555555544444444444444444444444332 333445555554443 5677889
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045523 284 EGEVSRLEQLKSSKMKELVLKKKLELAEILR 314 (634)
Q Consensus 284 e~EVeRLeeLK~~~mkeLI~k~R~ELeeLWd 314 (634)
++|+..|+.-.++-|..|-+ ...||..+-.
T Consensus 274 ~aE~~EleDkyAE~m~~~~E-aeeELk~lrs 303 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHE-AEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence 99999999999999999876 6777776643
No 87
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=59.91 E-value=2.5e+02 Score=30.27 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 38 VYGRKIDDAKISRAQLLRAIALSEA-------EVADICSTLGEQPGHCDWT--AGGNLRDKLKTITPLLEDMRQRKIDRK 108 (634)
Q Consensus 38 vyr~kVde~~~~K~~L~qsIa~~~~-------EL~~L~~eLge~~~~~~~~--~~~tL~eqL~~l~~~LEeLrk~K~eR~ 108 (634)
.+.+.+++....+.+....|..+.. +...+....|.......+. -..+|.+.+..|+..|+....--..-.
T Consensus 74 ~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~ 153 (342)
T cd08915 74 NIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVL 153 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444455555554444444444443 3344555666532221111 235788888888888888877666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC---CCccccC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 109 NQFLQVLNQLQIISNEICPKDN---MYKIIED-EADLS-EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVN 175 (634)
Q Consensus 109 ~ef~el~~qI~~Lc~eL~~~~~---~~~~~~d-~~dLS-~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~ 175 (634)
..|.....-+.-|| ++.. .+-|+.. ..+.+ ...+..++..+..|..-+.+|...+.+++..++
T Consensus 154 ~~~~~~~~~l~lL~----~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~ 221 (342)
T cd08915 154 QCYESIDPNLVLLC----GGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSR 221 (342)
T ss_pred HHHHHHHHHHHHhc----CChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666655555554 3321 0111111 11122 367888899999999999999998888877644
No 88
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.18 E-value=4e+02 Score=32.29 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 140 DLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLS 172 (634)
Q Consensus 140 dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~ 172 (634)
..+.+-++-|....+.|++++-.|+.++...+.
T Consensus 532 p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~ 564 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEYIEKQDLAREEIQ 564 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999888887655444
No 89
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=58.66 E-value=79 Score=29.96 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 045523 140 DLSEQRLKELRSQL----AYLQEEKSSRLRKVMKHLSNVNSLCMVL-GLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMA 214 (634)
Q Consensus 140 dLS~e~LeeLk~~L----~~LqkEKs~Rl~kv~el~~~I~~L~~eL-g~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~ 214 (634)
|+|-++|+.++.+- +-.|.|.-....|+..+.......-..+ +......+. -+|++.+=-.-++|+.+.|+.+-
T Consensus 9 disa~~L~glRtqc~~s~eltqqeIr~lE~KLvK~fSkQL~~K~k~~~~~~~~~l~-~yP~l~~WL~vVgl~~~~i~~i~ 87 (129)
T PF13543_consen 9 DISAEQLEGLRTQCATSSELTQQEIRTLEGKLVKYFSKQLQCKAKVAERERAAELN-SYPSLRQWLRVVGLRPESIQAIL 87 (129)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCchhcc-cCCcHHHHhhhcCCCHHHHHHHH
Confidence 44555555555553 2334455555556666665544333333 222222222 24555332236789999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhc
Q 045523 215 TTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITS 260 (634)
Q Consensus 215 ~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~ 260 (634)
..+..|+....-..+ ++.++.+.++...||+..|.....
T Consensus 88 ~~~~tLe~Llemsd~-------el~~~l~~~g~~~EE~rRL~~Al~ 126 (129)
T PF13543_consen 88 SKVLTLEALLEMSDE-------ELKEILNRCGAREEECRRLCRALS 126 (129)
T ss_pred HhhcCHHHHHhCCHH-------HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666666655544444 444555568888888888876553
No 90
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=57.70 E-value=3.4e+02 Score=31.06 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045523 149 LRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRM 228 (634)
Q Consensus 149 Lk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~ 228 (634)
|...+.+||. |..|.+.|.++++.+..=..+|=.|--.++.+- .|.....-=-.+.++.-++.++.-+.+|..-+
T Consensus 343 Le~kvkeLQ~-k~~kQqvfvDiinkLk~niEeLIedKY~viLEK----nd~~k~lqnLqe~la~tqk~LqEsr~eKetLq 417 (527)
T PF15066_consen 343 LEKKVKELQM-KITKQQVFVDIINKLKENIEELIEDKYRVILEK----NDIEKTLQNLQEALANTQKHLQESRNEKETLQ 417 (527)
T ss_pred HHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555554 345677777777777766666644433333321 00000000001223333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHH
Q 045523 229 QKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSS 296 (634)
Q Consensus 229 ~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~ 296 (634)
-++..+...-..|=.+--+...++..|.+..-.+ ..++.+-+.||+||+.+|-.
T Consensus 418 lelkK~k~nyv~LQEry~~eiQqKnksvsqclEm--------------dk~LskKeeeverLQ~lkge 471 (527)
T PF15066_consen 418 LELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM--------------DKTLSKKEEEVERLQQLKGE 471 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHhhhhHHHHHHHHHHHHH
Confidence 4555566666666666666677777777665333 56888999999999999965
No 91
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.55 E-value=1.9e+02 Score=27.91 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 139 ADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLG 182 (634)
Q Consensus 139 ~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg 182 (634)
.++|.+.+..+..++..|+.+...-...+..+..++..|...|-
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t 110 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT 110 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46789999999999999999988888888888887777766653
No 92
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.66 E-value=1.7e+02 Score=35.10 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hcCCChh
Q 045523 278 NNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILR-KMHTVTE 321 (634)
Q Consensus 278 ~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWd-k~~~s~e 321 (634)
.-+..++.+|..++ .|..+||+++.++-.+.-+.|- .+||-.+
T Consensus 606 ~e~~~l~~~~~~~e-kr~~RLkevf~~ks~eFr~av~~llGyki~ 649 (722)
T PF05557_consen 606 KEIAELKAELASAE-KRNQRLKEVFKAKSQEFREAVYSLLGYKID 649 (722)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcceee
Confidence 34777888888764 5667888887776666655544 4466554
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.48 E-value=3.8e+02 Score=30.34 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 88 DKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKV 167 (634)
Q Consensus 88 eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv 167 (634)
++++.++..++.+.++-.+=.+++..++.+|..+-.++........-..++-+=...++..+...+..|+.++..|...+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655555555555555555555554432110000011112235677788888888888876665555
Q ss_pred HHHHH
Q 045523 168 MKHLS 172 (634)
Q Consensus 168 ~el~~ 172 (634)
..++.
T Consensus 118 a~~L~ 122 (420)
T COG4942 118 AEQLA 122 (420)
T ss_pred HHHHH
Confidence 55544
No 94
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.30 E-value=2.5e+02 Score=33.90 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 34 ECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQ 113 (634)
Q Consensus 34 ecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~e 113 (634)
||-+.++....+.+.+-.+|..++...++++..+-.++ ..++....+-.+.-+.-+-.+..
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-------------------~~lr~~~~e~~~~~e~L~~aL~a 598 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL-------------------QELRKYEKESEKDTEVLMSALSA 598 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhCCCCC----CCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 114 VLNQLQIISNEICPKDN----MYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVL 181 (634)
Q Consensus 114 l~~qI~~Lc~eL~~~~~----~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eL 181 (634)
++++=..|-.-|..... -|.- |.+-+.+|+.++.....|-.++.+|+..|..++.+|
T Consensus 599 mqdk~~~LE~sLsaEtriKldLfsa-----------Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 599 MQDKNQHLENSLSAETRIKLDLFSA-----------LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 95
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.08 E-value=1.9e+02 Score=27.08 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 28 ILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADI 67 (634)
Q Consensus 28 l~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L 67 (634)
|..+|-| +..++..+......|+.+.+.|..+-.+...+
T Consensus 25 lr~~E~E-~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 25 LRRLEGE-LASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 23445555556666666666666655555554
No 96
>COG5293 Predicted ATPase [General function prediction only]
Probab=52.67 E-value=2.8e+02 Score=31.69 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 7 FRPNSKIWDEVGE--SDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLG 72 (634)
Q Consensus 7 L~eLq~IWdEIG~--~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLg 72 (634)
+.+.+.++++||+ |..-. +-+. ++...|+.++++ .++-+...|+..++.|..+-..+.
T Consensus 300 pd~i~~~ye~vg~~fpg~Vk-k~~e----~v~~F~r~~~e~---R~~yl~~ei~~i~~dLk~~n~~~~ 359 (591)
T COG5293 300 PDEIQVLYEEVGVLFPGQVK-KDFE----HVIAFNRAITEE---RHDYLQEEIAEIEGDLKEVNAELD 359 (591)
T ss_pred hHHHHHHHHHhhhcChHHHH-HhHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999995 44322 2222 345889999884 456667777777766665544433
No 97
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=48.80 E-value=5.9e+02 Score=31.19 Aligned_cols=315 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHH
Q 045523 8 RPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLR 87 (634)
Q Consensus 8 ~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~ 87 (634)
.++..+=..++.+..+|+....++| +|+..-..+...-+++-..|.....|+..+...| .++.
T Consensus 252 ~Ei~~L~~~~~~~~~~r~~~~k~le-----~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l------------~~~~ 314 (775)
T PF10174_consen 252 DEIYRLRSRGELSEADRDRLDKQLE-----VYKSHSLAMKSKMDRLKLELSRKKSELEALQTRL------------ETLE 314 (775)
T ss_pred HHHHHHHhcccccccchHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 88 DKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKV 167 (634)
Q Consensus 88 eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv 167 (634)
.+..+++.+++.|+..-..+-+.-.-+++.+..|-..|... ...++.....+..++.|++.=...+
T Consensus 315 ~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k--------------~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 315 EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK--------------NSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 045523 168 MKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLV-------- 239 (634)
Q Consensus 168 ~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~-------- 239 (634)
.++.. ...++..-|..|+..+..|++.-..+-.++..+...|.
T Consensus 381 ~~l~d-----------------------------~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~ 431 (775)
T PF10174_consen 381 EDLRD-----------------------------MLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNE 431 (775)
T ss_pred HHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Q ss_pred -HHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHH-HHHHHHHHH--hHHHHHHHHHHHHHHHHHh
Q 045523 240 -ELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEV-SRLEQLKSS--KMKELVLKKKLELAEILRK 315 (634)
Q Consensus 240 -eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EV-eRLeeLK~~--~mkeLI~k~R~ELeeLWdk 315 (634)
.+-..|+.-.-+.+.+.... .+.-...+.|. +.++.++.. .++.=+...+.+|.+-=-.
T Consensus 432 ~~~~~~lEea~~eker~~e~l-----------------~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~ 494 (775)
T PF10174_consen 432 DEALETLEEALREKERLQERL-----------------EEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQ 494 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q ss_pred cCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHH-------HHHHHHHhhhhhHH-HHhhc---
Q 045523 316 MHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEK-------VEKWFTAREEESWL-EEYNR--- 384 (634)
Q Consensus 316 ~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~-------Vekw~sl~eEe~wL-eEynr--- 384 (634)
+...-++...+.. +..-...-|...+-++.+.++.+..-..=+.+ ..+-..+-.+-.-. ++.++
T Consensus 495 l~~~kee~s~l~s-----~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~ 569 (775)
T PF10174_consen 495 LEDAKEEASKLAS-----SQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQA 569 (775)
T ss_pred HHHhhhHHHHHhh-----ccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hhHHhhHHHHHHHHHHHHHH
Q 045523 385 --VRLISMLEDYSCMRQEKELE 404 (634)
Q Consensus 385 --~rLl~~lee~~~~r~eKEeE 404 (634)
-||+.+|.+-..-+..||.+
T Consensus 570 EVERLl~~L~~~E~EK~~ke~k 591 (775)
T PF10174_consen 570 EVERLLDILREAENEKNDKEKK 591 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
No 98
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.77 E-value=3.1e+02 Score=27.96 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhcC
Q 045523 277 MNNIKYVEGEVSRLEQLKSSKMKELVLK-------KKLELAEILRKMH 317 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~~~mkeLI~k-------~R~ELeeLWdk~~ 317 (634)
..+...++.|+.|.+.-|..-||.++.+ ...++.++|...+
T Consensus 152 ~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~ 199 (211)
T cd07598 152 NRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAY 199 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999998888877643 4456677777653
No 99
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.44 E-value=2.4e+02 Score=27.99 Aligned_cols=84 Identities=25% Similarity=0.321 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSR 163 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~R 163 (634)
.++...+..++..|.++.+.+.+-..++..+..+++.+-..+... ...|..|...+..|+.+...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~--------------~~~l~~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEK--------------ERRLAELEAELAQLEEKIKDL 135 (194)
T ss_dssp --------------------------------------------H--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888887777766666655554433222 467888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 045523 164 LRKVMKHLSNVNSLCMVL 181 (634)
Q Consensus 164 l~kv~el~~~I~~L~~eL 181 (634)
-..+.+....+..|-.++
T Consensus 136 ~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 136 EEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877766665554
No 100
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.18 E-value=4.6e+02 Score=29.77 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCChhh-----hhhhccCCCCCCCCCCCCCHHHHHHH
Q 045523 142 SEQRLKELRSQLAYLQEEK---SSRLRKVMKHLSNVNSLCMVLGLDFKD-----TVCKIHPTLNDPKASKDVSNDTIEKM 213 (634)
Q Consensus 142 S~e~LeeLk~~L~~LqkEK---s~Rl~kv~el~~~I~~L~~eLg~df~~-----~v~evhpsl~d~~~s~~LS~~~L~~L 213 (634)
+.+.|+.+..++...|+.+ .+++..|..-+..+..|..+|+-.... .+++ .| ..+.+-.....|
T Consensus 337 ~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a-~p-------~rgrsSaRe~el 408 (502)
T KOG0982|consen 337 SSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA-NP-------VRGRSSAREIEL 408 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-cc-------ccCchhHHHHHH
Confidence 6788888888887766654 678888888888899999988777633 2333 11 344555667777
Q ss_pred HHHHHHHHHH
Q 045523 214 ATTIQSLQEV 223 (634)
Q Consensus 214 ~~~l~~Leee 223 (634)
...+.+|+..
T Consensus 409 eqevkrLrq~ 418 (502)
T KOG0982|consen 409 EQEVKRLRQP 418 (502)
T ss_pred HHHHHHhccc
Confidence 7777777543
No 101
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=48.06 E-value=16 Score=35.58 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhhhhH
Q 045523 303 LKKKLELAEILRKMHTVTETVGDFSIE 329 (634)
Q Consensus 303 ~k~R~ELeeLWdk~~~s~eer~~F~~~ 329 (634)
++.|.+|-+||+.|++|.-.|..|.--
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFfLL 29 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFFLL 29 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhe
Confidence 457899999999999999999987543
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.03 E-value=5.2e+02 Score=30.34 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDT 247 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~i 247 (634)
.++|+.+...+..++.+-..-..+++..+..=.++|..++.
T Consensus 452 ~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~ 492 (581)
T KOG0995|consen 452 ASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRK 492 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666667777777777888888744
No 103
>PRK02224 chromosome segregation protein; Provisional
Probab=47.39 E-value=6.1e+02 Score=30.94 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 50 RAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIIS 122 (634)
Q Consensus 50 K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc 122 (634)
...+...++.++.++..+-..|..-+.. ...+...+..+...++.++....+-......+...+..+.
T Consensus 379 l~~~~~~l~~l~~el~el~~~l~~~~~~-----~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 379 VEDRREEIEELEEEIEELRERFGDAPVD-----LGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666665555532211 1123334555555666665554444444444444444444
No 104
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.41 E-value=3.1e+02 Score=32.94 Aligned_cols=138 Identities=12% Similarity=0.166 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 36 LAVYGRKIDDAKISRAQLLRAIALSEAEVADICS--TLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQ 113 (634)
Q Consensus 36 l~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~--eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~e 113 (634)
++.++..+...+...+.|.+.++.++.+|..++- .......-+-.-.+-|..+-...-...|+.|+.+-++
T Consensus 505 ~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~------- 577 (722)
T PF05557_consen 505 LNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENED------- 577 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3457777888888888888888888888776431 1111000000003445555444344555555543222
Q ss_pred HHHHHHHHHHHhCCCCCCCccc-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC
Q 045523 114 VLNQLQIISNEICPKDNMYKII-EDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV-LGL 183 (634)
Q Consensus 114 l~~qI~~Lc~eL~~~~~~~~~~-~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e-Lg~ 183 (634)
+..++..+- ++...+.... ..........+..++..+..+++...+-.+.|..-..+....|.. ||-
T Consensus 578 L~~~l~~le---~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 578 LLARLRSLE---EGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHT---TTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHhcc---cCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222222221 1111122111 122334466789999999998765554444455555555555544 564
No 105
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=45.32 E-value=4.3e+02 Score=28.62 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CC-C-CCCCHHHHHHHHHHH----------H--
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHC---DW-T-AGGNLRDKLKTITPL----------L-- 97 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~---~~-~-~~~tL~eqL~~l~~~----------L-- 97 (634)
...+|....++.-.. ....+..+..++....+.|++|.... .+ . -+.+|.+.-.+++.+ +
T Consensus 7 a~S~Y~E~ka~lvr~---~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~~~ 83 (337)
T cd09234 7 ASSLYSEEKAKLLRE---VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAMGE 83 (337)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 557888877765333 37788889999999999999987421 11 0 122444443333322 2
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 98 -EDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLS---EQRLKELRSQLAYLQEEKSSRLRKVMKHLSN 173 (634)
Q Consensus 98 -EeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS---~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~ 173 (634)
..+...-.+-+.+...+......=|..+... |........++ ..++..|+..|..-..-= ..+......
T Consensus 84 L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k---~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD----~~l~~~~~~ 156 (337)
T cd09234 84 LSDVYQDVEAMLNEIESLLEEEELQEKEFQEA---VGKRGSSIAHVTELKRELKKYKEAHEKASQSN----TELHKAMNL 156 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---cCCCCCchhhHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHH
Confidence 2222222333333333333333333333222 11100011112 133333333333333322 223333333
Q ss_pred HHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 174 VNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLV 239 (634)
Q Consensus 174 I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 239 (634)
.......|..+... +....|+..... .+-....+..|+..+.+|+..+.+|..-+++|+..++
T Consensus 157 ~~~~l~lL~~~~~~-l~~~iPs~~~~~--~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 157 HIANLKLLAGPLDE-LQKKLPSPSLLD--RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHcCcHHH-HHhhCCCccccC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555445433 223345432211 1234567999999999999999999999999977655
No 106
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=44.03 E-value=5.4e+02 Score=29.35 Aligned_cols=248 Identities=12% Similarity=0.124 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHH-----------HHHH
Q 045523 25 DKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDK-----------LKTI 93 (634)
Q Consensus 25 d~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eq-----------L~~l 93 (634)
++.+..+++++..+=..+-.........+.+.++...+++..++..|+.+.....- ....|.+. -..|
T Consensus 10 ~~~~~~~~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~-~~~~l~~~w~~v~~~~~~r~~~I 88 (473)
T PF14643_consen 10 EKALESFHEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEY-SIQDLLELWDEVAEHSQKRKQWI 88 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777676666666666778889999999999999999999987432110 01111111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCcc--ccCC--CCCC---HHHHHHHHHHHHHHHHHHHHHH
Q 045523 94 TPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDN--MYKI--IEDE--ADLS---EQRLKELRSQLAYLQEEKSSRL 164 (634)
Q Consensus 94 ~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~--~~~~--~~d~--~dLS---~e~LeeLk~~L~~LqkEKs~Rl 164 (634)
+.--+.|..--.+|.+.+.. .++++++.|....+ |..+ .++. ..+. +.+-..+...+..|..---.+.
T Consensus 89 ~~l~~~L~~~E~~R~~~l~~---~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e 165 (473)
T PF14643_consen 89 KELDEDLEELEKERADKLKK---VLRKYVEILEKIAHLLPPDVERLIEKEAMEINQALLGNRRAYADLFANLMEAELQRE 165 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 22222222233344444333 33444444433221 1100 0110 0111 2333344444444444433344
Q ss_pred HHHHHHHHHHHHHHHHhCCCh-hhhhhh-cc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 165 RKVMKHLSNVNSLCMVLGLDF-KDTVCK-IH-PTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVEL 241 (634)
Q Consensus 165 ~kv~el~~~I~~L~~eLg~df-~~~v~e-vh-psl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eL 241 (634)
.....-......=|..+-.+. .+.+.+ +. +.+.++ +....-+............ ....+
T Consensus 166 ~~~~~~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P-------~~~~~~~e~~~~~Q~~l~~-----------~r~~~ 227 (473)
T PF14643_consen 166 LSYRRRWQDRVDDWRALRHERAIQEFREFMASEEFQNP-------PERKQLLEQMRKEQVDLHE-----------KRLEL 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCccccCCC-------hHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 444444444455555554432 010111 10 111111 1222222222222211112 22222
Q ss_pred HHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 045523 242 WNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKM 316 (634)
Q Consensus 242 W~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~ 316 (634)
|..+ +.+ .|..+|..-+..|.+.+..|.+-=...+..+..+.|...+.+|+.|
T Consensus 228 L~~l--------------~~l--------~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec 280 (473)
T PF14643_consen 228 LQSL--------------CDL--------LPPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQEC 280 (473)
T ss_pred HHHh--------------hcC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222 2456778889999999999999999999999999999999999998
No 107
>PRK03918 chromosome segregation protein; Provisional
Probab=43.99 E-value=6.7e+02 Score=30.46 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 91 KTITPLLEDMRQRKIDRKNQFLQVLNQLQII 121 (634)
Q Consensus 91 ~~l~~~LEeLrk~K~eR~~ef~el~~qI~~L 121 (634)
+.|..+++.++.+...-..++..+...+..+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555555555555555444
No 108
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.42 E-value=7.9e+02 Score=31.11 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 144 QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCM 179 (634)
Q Consensus 144 e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~ 179 (634)
+.+...+..+.+|+++.+.+..++.++...+...-.
T Consensus 288 ~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea 323 (1074)
T KOG0250|consen 288 EEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEA 323 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344455566666666666666666666644444333
No 109
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.25 E-value=6.4e+02 Score=30.01 Aligned_cols=48 Identities=29% Similarity=0.346 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHcCCCHHHH
Q 045523 205 VSNDTIEKMATTIQSLQEVKIQRMQKLQHLA------TSLVELWNLMDTPLEEQ 252 (634)
Q Consensus 205 LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~------~~L~eLW~~L~ip~eEr 252 (634)
.+.+-|..+-.+...+++.+..|+.++.... ..+..+|+.++...+..
T Consensus 6 ~~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~m 59 (611)
T KOG2398|consen 6 RSTKELADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEAM 59 (611)
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHH
Confidence 3456677888888899999999999876544 37889999998876553
No 110
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=42.98 E-value=5.5e+02 Score=29.14 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 045523 143 EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQE 222 (634)
Q Consensus 143 ~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Lee 222 (634)
...|..|+..|..|+.-++.-...+...+..|..=.... ..+-... +.+-+...|+. -..+|..
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~----k~~~~~~---------~~~s~R~y~e~---~k~kL~~ 217 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKF----KSSSLSA---------SGSSNRAYVES---SKKKLSE 217 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhcc---------CCCcchHHHHH---hHHHHHH
Confidence 477778888888888888777777666665544322221 1110010 11112233333 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045523 223 VKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELV 302 (634)
Q Consensus 223 eK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI 302 (634)
+-..-+.++.+|..-|..| |... +.+|+.|+ ..-++.+..++..+..-= +.|.++|
T Consensus 218 ~Sd~lltkVDDLQD~vE~L----------RkDV--~~RgVRp~-----------~~qLe~v~kdi~~a~keL-~~m~~~i 273 (426)
T smart00806 218 DSDSLLTKVDDLQDIIEAL----------RKDV--AQRGVRPS-----------KKQLETVQKELETARKEL-KKMEEYI 273 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHH--HHcCCCCC-----------HHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3333333444443333322 2222 45677655 666777777777664322 2477777
Q ss_pred HHHHHHHHHHHHhc-CCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 045523 303 LKKKLELAEILRKM-HTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKW 369 (634)
Q Consensus 303 ~k~R~ELeeLWdk~-~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw 369 (634)
...+---..+|..= +.-.++ -+.|...|.-+..|++-...-.+.|.+|+.+
T Consensus 274 ~~eKP~WkKiWE~EL~~VcEE----------------qqfL~lQedL~~DL~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 274 DIEKPIWKKIWEAELDKVCEE----------------QQFLTLQEDLIADLKEDLEKAEETFDLVEQC 325 (426)
T ss_pred hhcChHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544444445421 111112 2346666777777888888888899999988
No 111
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=42.93 E-value=3.7e+02 Score=27.21 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 39 YGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQL 118 (634)
Q Consensus 39 yr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI 118 (634)
+.+.|+-+...-++|...|.++..++..+-.++.. ..+|.+.+..++.-+-.+...+..-+.+-..+..+.
T Consensus 27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~---------aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK---------AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556667777777777777776555543 346777777777777777777777777777777777
Q ss_pred HHHHHHhCC
Q 045523 119 QIISNEICP 127 (634)
Q Consensus 119 ~~Lc~eL~~ 127 (634)
+.|...++.
T Consensus 98 q~L~~~i~~ 106 (193)
T PF14662_consen 98 QSLVAEIET 106 (193)
T ss_pred HHHHHHHHH
Confidence 777776653
No 112
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=42.71 E-value=4.3e+02 Score=27.80 Aligned_cols=47 Identities=11% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 25 DKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLG 72 (634)
Q Consensus 25 d~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLg 72 (634)
|+.|-.....+..+|+.+|+-. ....+|.|+++-...+...|-.-|+
T Consensus 105 Dr~LI~ngekI~~Ly~e~~~vk-~~qkrLdq~L~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 105 DRTLIENGEKISGLYNEVVKVK-LDQKRLDQELEFILSQQQELEDLLD 151 (254)
T ss_pred HHHHHhCcHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999987644 5556676666655554444444333
No 113
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.15 E-value=6.9e+02 Score=30.08 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 138 EADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV 180 (634)
Q Consensus 138 ~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e 180 (634)
+.++...++..++..+..+++++..=.+++......+...-..
T Consensus 173 e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~ 215 (716)
T KOG4593|consen 173 EVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQAS 215 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999988887777666665555544443
No 114
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=41.85 E-value=1.6e+02 Score=25.13 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 3 TPIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVAD 66 (634)
Q Consensus 3 ~~~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~ 66 (634)
-|+||.-||.=||-|-..-.+-.+.+.+..+|+...+-. -|-+...-++++++-.+++..++.
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq-~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQ-HDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhHHHHHHHHHh
Confidence 378999999999999887776555555665554433322 234444555555555555555543
No 115
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=41.61 E-value=15 Score=35.80 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCC-----------------ccc----ccCCCcCcH-HHHHHHHHHHHH
Q 045523 232 QHLATSLVELWNLMDTPLEEQEMFHNITSKIAAL-----------------EPE----ITEPNFLSM-NNIKYVEGEVSR 289 (634)
Q Consensus 232 ~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S-----------------~~e----i~~~~~LS~-~tI~~le~EVeR 289 (634)
+..+.+|.+||+.|+||.-.|..|--...|=-+. ... +-+...+|. .++.++..|-+-
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~~ 82 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRREREM 82 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHHH
Confidence 4567899999999999998888885444332100 000 011122333 366666666554
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhh---hhhhHh
Q 045523 290 LEQLKSSKMKELVLKKKLELAEILRKMHTVTETVG---DFSIEA 330 (634)
Q Consensus 290 LeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~---~F~~~~ 330 (634)
|-..-. +.| .+.|-++++-+.+++.+..+ +++.-+
T Consensus 83 L~k~m~---~rl---s~eere~ly~kWgI~l~sK~RrlQL~~~L 120 (161)
T PF11995_consen 83 LAKQMQ---KRL---SREEREELYKKWGIPLDSKQRRLQLANRL 120 (161)
T ss_pred HHHHHH---HhC---CHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 421111 122 24566777888888777665 454433
No 116
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.44 E-value=2.9e+02 Score=31.79 Aligned_cols=69 Identities=9% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045523 34 ECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTL---GEQPGHCDWTAGGNLRDKLKTITPLLEDMRQR 103 (634)
Q Consensus 34 ecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eL---ge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~ 103 (634)
..++..-..|.++++.-+.-.-.|+.++..+.+|...+ .... ++-...+.+|.--++.|+.+|+.|..+
T Consensus 355 ~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq-eilr~~G~~L~~~EE~Lr~Kldtll~~ 426 (508)
T KOG3091|consen 355 IRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ-EILRKRGYALTPDEEELRAKLDTLLAQ 426 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCcCCccHHHHHHHHHHHHHH
Confidence 35556666677777666666677777777666655322 1100 000013344444456777777777654
No 117
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.18 E-value=4e+02 Score=32.34 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 045523 6 KFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAK-ISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGG 84 (634)
Q Consensus 6 lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~-~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~ 84 (634)
+++++..||+. |.+..-.......--|-........||... ..|.+|.+.|....++|..|-.+|=-.-.........
T Consensus 734 ~~~k~~si~~~-~~t~~~q~~~~a~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a 812 (1104)
T COG4913 734 LSRKVHSIAKQ-GMTGALQALGAAHFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTA 812 (1104)
T ss_pred HHHHHhhhhhh-hhhHHHHHHHHhhhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchh
Q ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045523 85 NLRDK---LKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKS 161 (634)
Q Consensus 85 tL~eq---L~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs 161 (634)
.+.+. ++.+-..+..|....++++-+|. .++-+-|... |...+..|-.+|..-..+..
T Consensus 813 ~~~e~~ael~~ipey~~rL~~L~~D~Lpef~------arF~~llN~~-------------S~~~v~q~~~~L~~er~~Ie 873 (1104)
T COG4913 813 ALSEVGAELDDIPEYLARLQTLTEDALPEFL------ARFQELLNRS-------------SDDGVTQLLSHLDHERALIE 873 (1104)
T ss_pred hhhhhccCHhHHHHHHHHHHhhhhhhHHHHH------HHHHHHhhhc-------------ccchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 045523 162 SRLRKVMKHLSNV 174 (634)
Q Consensus 162 ~Rl~kv~el~~~I 174 (634)
+|++-+..-...+
T Consensus 874 ERIe~IN~SL~~v 886 (1104)
T COG4913 874 ERIEAINDSLRRV 886 (1104)
T ss_pred HHHHHHHHHHhhc
No 118
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.86 E-value=5.4e+02 Score=28.45 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 045523 162 SRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQE 222 (634)
Q Consensus 162 ~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Lee 222 (634)
.-+.++.++-..|..|-..+|++.. . .|.+..+..+.+| ..+|+.|...+.-|..
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~-~----~~~l~~~~~~~~l-~~~l~~L~~~lslL~~ 260 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSD-K----MSSLDSDTSSSPL-LPALNELERQLSLLDP 260 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcc-c----cccccccCCcchH-HHHHHHHHHHHHhcCH
Confidence 3456777777788888899999432 1 2223222223333 3556666666666643
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.35 E-value=4.6e+02 Score=27.47 Aligned_cols=86 Identities=10% Similarity=0.223 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 39 YGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQL 118 (634)
Q Consensus 39 yr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI 118 (634)
.+..+...+.....+-.++...+.+|+.+-.-+.-..... ..++=..++.+|...+..++.+...-..++.++...+
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---SAVKDERELRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555544444333211111 1234444588888888888888888888888888888
Q ss_pred HHHHHHhCC
Q 045523 119 QIISNEICP 127 (634)
Q Consensus 119 ~~Lc~eL~~ 127 (634)
+.+...+..
T Consensus 120 ~~l~~~i~~ 128 (239)
T COG1579 120 EKLEKEIED 128 (239)
T ss_pred HHHHHHHHH
Confidence 888776644
No 120
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.72 E-value=8.5e+02 Score=30.43 Aligned_cols=76 Identities=7% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC--CChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHH
Q 045523 278 NNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMH--TVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEE 355 (634)
Q Consensus 278 ~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~--~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~ 355 (634)
+-++....|+.-|...|. +++.=++..-..|.+|-.... ++.|+.-.-+. | -+.+.||-..++|.+|..|++.
T Consensus 403 kelE~k~sE~~eL~r~kE-~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt---d-knlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKE-RLSRELDQAESTIADLKEQVDAALGAEEMVEQLT---D-KNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH---h-hccCHHHHHHHHHHHHHHHHHH
Confidence 345555556555555442 344444444444444433221 33333221111 1 1344577777777777777654
Q ss_pred HHh
Q 045523 356 ASS 358 (634)
Q Consensus 356 ~~s 358 (634)
-+.
T Consensus 478 ee~ 480 (1243)
T KOG0971|consen 478 EEM 480 (1243)
T ss_pred HHH
Confidence 433
No 121
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=38.80 E-value=37 Score=32.23 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM 245 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L 245 (634)
..|..-+..+..+++.-..=...+..-+..|.+||..-
T Consensus 79 ~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 79 SSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444444444443333333334444568888888764
No 122
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=38.40 E-value=4.2e+02 Score=26.49 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045523 36 LAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQ 74 (634)
Q Consensus 36 l~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~ 74 (634)
+.+++.++.........|.+.+...++||..|.+.|..+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~e 119 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTE 119 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 456667777777778889999999999999998887664
No 123
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.24 E-value=1.5e+02 Score=22.93 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 30 EIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGE 73 (634)
Q Consensus 30 ~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge 73 (634)
|+|++| +++++-.+.....-+.|.+..+.+++++..|-..|+.
T Consensus 2 QlE~Dy-~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 2 QLERDY-DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456554 6677778888888889999999999999988776653
No 124
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.97 E-value=2.6e+02 Score=32.38 Aligned_cols=71 Identities=15% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 33 QECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFL 112 (634)
Q Consensus 33 qecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~ 112 (634)
.||..++.+ ++.+++.|..+..++......+..|-++|-.. ...-.+|+..+..+|-.|..+-.....+|.
T Consensus 441 ~Ec~aL~~r-L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT--------r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 441 AECRALQKR-LESAEKEKESLEEELKEANQNISRLQDELETT--------RRNYEEQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 55556666666666666666666666666542 234555666666666666554444333333
No 125
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.94 E-value=8.7e+02 Score=30.03 Aligned_cols=309 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 045523 7 FRPNSKIWDEVGESDNER---DKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADI---------------- 67 (634)
Q Consensus 7 L~eLq~IWdEIG~~e~eR---d~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L---------------- 67 (634)
+..+..+|..+....... ...+..+.+.+...-. .+.+......++...+......+..+
T Consensus 381 le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 459 (908)
T COG0419 381 LERLKQLEEAIQELKEELAELSAALEEIQEELEELEK-ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK 459 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q ss_pred HHHhCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHH
Q 045523 68 CSTLGEQPGHCDWTAGGNLRD-KLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRL 146 (634)
Q Consensus 68 ~~eLge~~~~~~~~~~~tL~e-qL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~L 146 (634)
|-.-|.+-.......-..+.. ++..++.++.. .+.+.+...++.++..++..++..+...........+...-..+.+
T Consensus 460 CPvCg~~l~~~~~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~l 538 (908)
T COG0419 460 CPVCGQELPEEHEKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKL 538 (908)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH--HHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 045523 147 KELRSQLAYLQEE------------KSSRLRKVMKHLSNVNSLC--MVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEK 212 (634)
Q Consensus 147 eeLk~~L~~LqkE------------Ks~Rl~kv~el~~~I~~L~--~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~ 212 (634)
......++.+..+ ...+..++.........+. ...--+......++ .+.+..
T Consensus 539 ~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~--------------~~~~~~ 604 (908)
T COG0419 539 ENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKEL--------------KKKLKE 604 (908)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHH
Q 045523 213 MATTIQSLQEVKIQR-----MQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEV 287 (634)
Q Consensus 213 L~~~l~~LeeeK~~R-----~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EV 287 (634)
|......++.....+ ...++.....+...|+.++ .+..|.... .+.+..++..+
T Consensus 605 l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~----~~~~~~~~~-----------------~~~l~~~~~~~ 663 (908)
T COG0419 605 LEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN----LQAELEELL-----------------QAALEELEEKV 663 (908)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHH-----------------HHHHHHHHHHH
Q ss_pred HHHHHHHH-------------------HhHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCHHH---HHHHH
Q 045523 288 SRLEQLKS-------------------SKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMD---LLEQI 345 (634)
Q Consensus 288 eRLeeLK~-------------------~~mkeLI~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~Ee---LL~~~ 345 (634)
..+..... +.+..=+...+.+|++++.+. .. .+...
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~----------------------~~~~~~~~~l 721 (908)
T COG0419 664 EELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKL----------------------GEIEQLIEEL 721 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhh
Q 045523 346 DLQIAKAKEEASSRKEILEKVEKWFTARE 374 (634)
Q Consensus 346 E~EI~rLKe~~~srK~Ile~Vekw~sl~e 374 (634)
+..+..++......+.+-..+..|..+-+
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 750 (908)
T COG0419 722 ESRKAELEELKKELEKLEKALELLEELRE 750 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 126
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.79 E-value=87 Score=34.61 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM 245 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L 245 (634)
+.|..|...+..+...-....+.+..+...|.+|||+.
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666666666655666666777888999999963
No 127
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.04 E-value=7.3e+02 Score=28.89 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQV 114 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el 114 (634)
+.+.|..+|++....+....-......+|. ..+..+|+...+.|.....++..+
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec--------------------------~aL~~rL~~aE~ek~~l~eeL~~a 467 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAEC--------------------------RALQKRLESAEKEKESLEEELKEA 467 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777766555544443333333333 344455556666777777888888
Q ss_pred HHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 115 LNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHL 171 (634)
Q Consensus 115 ~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~ 171 (634)
...|..|-++|......| .++|..+..||..|.+.......++..++
T Consensus 468 ~~~i~~LqDEL~TTr~NY----------E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 468 NQNISRLQDELETTRRNY----------EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999997663222 46788888888888888777777766665
No 128
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.84 E-value=8.8e+02 Score=29.74 Aligned_cols=332 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 36 LAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVL 115 (634)
Q Consensus 36 l~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~ 115 (634)
.+-++..++++ ..-+..+++--....+|.-|.+.|.-+| .+.|.|+.....-......++
T Consensus 895 veE~~E~L~~a-~e~~~fI~qhG~tls~LEpia~~LqsDP-------------------e~~e~L~~~y~qA~~~q~q~~ 954 (1480)
T COG3096 895 VEEIRERLDEA-QEAARFIQQHGNTLSKLEPIASVLQSDP-------------------EQFEQLKEDYAQAQQMQRQAR 954 (1480)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhcchHHhhhhHHHHHhCCH-------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCCC-CCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCh---hhh
Q 045523 116 NQLQIISNEICPKDN-MYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV---LGLDF---KDT 188 (634)
Q Consensus 116 ~qI~~Lc~eL~~~~~-~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e---Lg~df---~~~ 188 (634)
.++-.|.+.+....+ .|.-+++--.-+.+--+.|+..|..++.+...-.+++.....+...+..+ |..++ .+.
T Consensus 955 qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~ 1034 (1480)
T COG3096 955 QQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKEL 1034 (1480)
T ss_pred HHHHHHHHHHHhhcccccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred hhhccCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccc
Q 045523 189 VCKIHPTLND-----PKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIA 263 (634)
Q Consensus 189 v~evhpsl~d-----~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~ 263 (634)
+.++...+.+ +.+.-.=-.-.-+.|...+..-...+..-.+++--.-..+..|-.+|.--+-.-........+-+
T Consensus 1035 l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK 1114 (1480)
T COG3096 1035 LNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAK 1114 (1480)
T ss_pred HHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q ss_pred CCcccccCCCcCcHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhh--hhhhHhhhcC--
Q 045523 264 ALEPEITEPNFLSMNNIKYVEGEV-----SRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVG--DFSIEAIESG-- 334 (634)
Q Consensus 264 ~S~~ei~~~~~LS~~tI~~le~EV-----eRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~--~F~~~~idsg-- 334 (634)
++-+-|..-..-+.---.-...|+ +.|..|-..-+.-|-. .-..=+.|-|.+..|++.+. ..+-+||--+
T Consensus 1115 ~~WC~VmRl~r~n~vErRL~rRElAYlsaDELRSMSDKaLGALR~-AVAdNE~LRD~LR~SED~~rPE~Kv~F~IAVYQH 1193 (1480)
T COG3096 1115 AGWCAVMRMVKDNGVERRLHRRELAYLSADELRSMSDKALGALRL-AVADNEHLRDVLRLSEDPKRPERKIQFFIAVYQH 1193 (1480)
T ss_pred cchhhhhhhhhcccHHHHHHHHHhhhcCHHHHhhhhHHHHHHHHH-HhcchHHHHHHHhhccCCCCcchhhhhHHHHHHH
Q ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhHHHHhhchhHH
Q 045523 335 -----------SMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEESWLEEYNRVRLI 388 (634)
Q Consensus 335 -----------~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eEe~wLeEynr~rLl 388 (634)
..||-+-++.||-|+.+|.++...|..=|.--.+--+-.=-+..-.|-||.|+|
T Consensus 1194 LRERIRQDIIrTDDPveAIEqMEiEL~RLTeELT~REqkLAISS~SVanIiRKTIqREQNRIRML 1258 (1480)
T COG3096 1194 LRERIRQDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRML 1258 (1480)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHhhHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
No 129
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=36.56 E-value=1.6e+02 Score=31.39 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045523 236 TSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVL 303 (634)
Q Consensus 236 ~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~ 303 (634)
...+.|..++..-+|-++.....+..++ ++-...-..+..-++||..|+..+|.+|+.
T Consensus 33 e~~qkl~sr~~~~~ekke~i~r~n~k~~----------d~v~~~~~~~~~~~erl~~lr~shi~el~s 90 (359)
T KOG4398|consen 33 EKNQKLYSRAQRHQEKKEKIQRHNRKLG----------DLVEKKTIDLRSHYERLANLRRSHILELTS 90 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444455555544444332 111222233556788999999999888765
No 130
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.91 E-value=7.7e+02 Score=28.79 Aligned_cols=251 Identities=16% Similarity=0.198 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHH----HHHH-HHHHHHHHHH
Q 045523 39 YGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLED----MRQR-KIDRKNQFLQ 113 (634)
Q Consensus 39 yr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEe----Lrk~-K~eR~~ef~e 113 (634)
+..++++.=..-..+...+=+--.+|..=+..|-...|... ...+..++..++.++.. +..- -..=-..+..
T Consensus 210 l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~---~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~ 286 (569)
T PRK04778 210 LEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLD---HLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEE 286 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC---CCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 33344433333333333333333444555556655555543 34556666666666555 2211 1222345566
Q ss_pred HHHHHHHHHHHhCCCCCCCccccCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhC
Q 045523 114 VLNQLQIISNEICPKDNMYKIIEDEADL-SEQRLKELRSQLAYLQEEKSSRLR----------KVMKHLSNVNSLCMVLG 182 (634)
Q Consensus 114 l~~qI~~Lc~eL~~~~~~~~~~~d~~dL-S~e~LeeLk~~L~~LqkEKs~Rl~----------kv~el~~~I~~L~~eLg 182 (634)
+..+|..|.+.|...-.-.. .+..... -.+.|..++.....|..|...=-+ .+..+...|..+...+.
T Consensus 287 i~~~Id~Lyd~lekE~~A~~-~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 287 IQERIDQLYDILEREVKARK-YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 66777777776643311000 1111111 234445555555555544432222 24444444544444432
Q ss_pred CChhhhhhhccCCCCCCCCCCCCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 045523 183 LDFKDTVCKIHPTLNDPKASKDVS--------------NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELW------ 242 (634)
Q Consensus 183 ~df~~~v~evhpsl~d~~~s~~LS--------------~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW------ 242 (634)
.. ...+.+.. .+++-- ......+...+..|+..-..-..++..+...+..+=
T Consensus 366 ~~-~~~i~~~~-------~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 366 EI-TERIAEQE-------IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HH-HHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 11111110 011111 122333344444444433333344455555444433
Q ss_pred HHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 045523 243 NLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIK-YVEGEVSRLEQLKSSKMKELVL 303 (634)
Q Consensus 243 ~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~-~le~EVeRLeeLK~~~mkeLI~ 303 (634)
++=|+|..+...|..+...+..-...+.. +.+..+.|+ .++...+|++.|..+ ..+|+.
T Consensus 438 ~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q-~~dL~~ 497 (569)
T PRK04778 438 NLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEE-TEELVE 497 (569)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 24578899999998776555533344555 888899999 888888898888876 344443
No 131
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=35.77 E-value=8.3e+02 Score=29.12 Aligned_cols=105 Identities=15% Similarity=0.235 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 045523 53 LLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMY 132 (634)
Q Consensus 53 L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~ 132 (634)
|..+|..+..|-+...-.|.. ....+.+....+..++..|+.+|..-+..+.++..+|..|-..+.....+
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~--------e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~- 72 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKE--------ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP- 72 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-
Confidence 344555555555554444433 12356677888889999999999999999999999999998888766321
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 133 KIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKH 170 (634)
Q Consensus 133 ~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el 170 (634)
.....+|... ..|+..+..|++|++.=..++...
T Consensus 73 ---~~pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqaq 106 (617)
T PF15070_consen 73 ---EPPAGPSEVE-QQLQAEAEHLRKELESLEEQLQAQ 106 (617)
T ss_pred ---cccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123556544 456667777777665444444443
No 132
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=35.56 E-value=3.2e+02 Score=26.75 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHH-H
Q 045523 158 EEKSSRLRKVMKHLSNVNSLCMVL---GLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRM-QKL-Q 232 (634)
Q Consensus 158 kEKs~Rl~kv~el~~~I~~L~~eL---g~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~-~kl-~ 232 (634)
....+|..++.++...+..|-.++ .+|+.+++..+. ...=..+...+....+.-..+. ... +
T Consensus 21 ~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i~-------------~~~~~~~~~~f~~~a~~L~~~~g~s~~~ 87 (170)
T TIGR02833 21 NRFKERPRQLRQLINALQSLEAEIVYGHTPLPEAFKKIA-------------LKSPKPVNLLFESASERLKEGEGLTVYE 87 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH-------------hhcchhHHHHHHHHHHHHHhCCCCCHHH
Confidence 456789999999999888888886 355556554431 0111112222222211111111 123 4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhhccccCC
Q 045523 233 HLATSLVELWNLMDTPLEEQEMFHNITSKIAAL 265 (634)
Q Consensus 233 ~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S 265 (634)
.+...+.++|..+....++++.+...-..++.|
T Consensus 88 ~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~ 120 (170)
T TIGR02833 88 AWKKALNEVWKQTALQKSEKEILLQFGKTLGES 120 (170)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcC
Confidence 457888999999999999999998877666643
No 133
>PF14992 TMCO5: TMCO5 family
Probab=35.32 E-value=4.9e+02 Score=27.89 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045523 48 ISRAQLLRAIALSEAEVADI 67 (634)
Q Consensus 48 ~~K~~L~qsIa~~~~EL~~L 67 (634)
..-..+.++|.+.+.++..=
T Consensus 77 ~~ne~l~~~~~elq~k~~e~ 96 (280)
T PF14992_consen 77 KENEHLSKSVQELQRKQDEQ 96 (280)
T ss_pred hhhHhhhhhhhhhhhhhccc
Confidence 34455666777777665543
No 134
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.82 E-value=2.2e+02 Score=34.37 Aligned_cols=148 Identities=17% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHhhhCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 045523 12 KIWDEVGESDNER-DKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKL 90 (634)
Q Consensus 12 ~IWdEIG~~e~eR-d~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL 90 (634)
+++.||-+++-++ ...|.++| ..|..|...+.+++.++..--.+|....- .-.-|.+++
T Consensus 257 DLfSEl~~~EiqKL~qQL~qve---------------~EK~~L~~~L~e~Q~qLe~a~~als~q~e-----ki~~L~e~l 316 (717)
T PF09730_consen 257 DLFSELNLSEIQKLKQQLLQVE---------------REKSSLLSNLQESQKQLEHAQGALSEQQE-----KINRLTEQL 316 (717)
T ss_pred hhhhhcchHHHHHHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_pred HHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCC
Q 045523 91 KTITPL-------------------------------LEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEA 139 (634)
Q Consensus 91 ~~l~~~-------------------------------LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~ 139 (634)
++++.. ++-|..+...-..++..++.++..|-+.+... .... -++.
T Consensus 317 ~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~--~~~~-~~ek 393 (717)
T PF09730_consen 317 DALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNEL--EERY-KQEK 393 (717)
T ss_pred HHHhhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHH
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 140 DLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLG 182 (634)
Q Consensus 140 dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg 182 (634)
+.-...+..|..++..+++......+++..+...+..+...-|
T Consensus 394 ~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~ 436 (717)
T PF09730_consen 394 DRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAG 436 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
No 135
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.34 E-value=4e+02 Score=31.58 Aligned_cols=192 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-----------ChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045523 157 QEEKSSRLRKVMKHLSNVNSLCMVLGL-----------DFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKI 225 (634)
Q Consensus 157 qkEKs~Rl~kv~el~~~I~~L~~eLg~-----------df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~ 225 (634)
..+..++...+....+.+.++....+. +..+..... ...++.+...+..|.+++.
T Consensus 45 ~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--------------~~~~~~~~~~i~~l~~~~~ 110 (646)
T PRK05771 45 LRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDV--------------EEELEKIEKEIKELEEEIS 110 (646)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHH-
Q 045523 226 QRMQKLQHLATSLVEL--WNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELV- 302 (634)
Q Consensus 226 ~R~~kl~~L~~~L~eL--W~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI- 302 (634)
+-.++++.+...+..| |..+++|.+.-.....+...++ .++.+..+....+........-..-+..+
T Consensus 111 ~L~~~~~~l~~~~~~l~~~~~ld~~l~~~~~~~~~~~~~G----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (646)
T PRK05771 111 ELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVG----------TVPEDKLEELKLESDVENVEYISTDKGYVY 180 (646)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCHHHhCCCCcEEEEEE----------EecchhhhhHHhhccCceEEEEEecCCcEE
Q ss_pred ------HHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH--------
Q 045523 303 ------LKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEK-------- 368 (634)
Q Consensus 303 ------~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vek-------- 368 (634)
.+...++.++++.+ .|...-+.. ...+.+.++..+.++..++++.+.-+.-+..+.+
T Consensus 181 ~vvv~~~~~~~~~~~~l~~~--------~f~~~~~p~-~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~ 251 (646)
T PRK05771 181 VVVVVLKELSDEVEEELKKL--------GFERLELEE-EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLA 251 (646)
T ss_pred EEEEEEhhhHHHHHHHHHHC--------CCEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHH
Q 045523 369 WFTAREEESWLEE 381 (634)
Q Consensus 369 w~sl~eEe~wLeE 381 (634)
|...+..+....+
T Consensus 252 ~~~~l~~~~~~~~ 264 (646)
T PRK05771 252 LYEYLEIELERAE 264 (646)
T ss_pred HHHHHHHHHHHHH
No 136
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=33.89 E-value=52 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHH-HhchHHHHHHH
Q 045523 343 EQIDLQIAKAKEEA-SSRKEILEKVE 367 (634)
Q Consensus 343 ~~~E~EI~rLKe~~-~srK~Ile~Ve 367 (634)
..||.||..+...| ..|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 46899999997665 57899999885
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.48 E-value=5.8e+02 Score=26.70 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 140 DLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVL 181 (634)
Q Consensus 140 dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eL 181 (634)
.=+.+.++.|...++.++.....=..++..+.+.+..|-...
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888877776667777777666666554
No 138
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.04 E-value=1.1e+03 Score=29.82 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045523 85 NLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPK 128 (634)
Q Consensus 85 tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~ 128 (634)
...+.-..+..+++.++.......+++..++..++++-..|...
T Consensus 473 ~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 473 NQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555668888899999999999999999999999888887554
No 139
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=33.02 E-value=6.8e+02 Score=27.32 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAE-------VADICSTLGEQPGHCDWT--AGGNLRDKLKTITPLLEDMRQRKIDR 107 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~E-------L~~L~~eLge~~~~~~~~--~~~tL~eqL~~l~~~LEeLrk~K~eR 107 (634)
+-+...+++....+.+....+..+... -..+....|.......+. -..+|...+..|+..|+....-=..=
T Consensus 74 ~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v 153 (353)
T cd09236 74 ERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELV 153 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444556666666665555555555533 345555666432221221 34588889999999999887776666
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--CCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 108 KNQFLQVLNQLQIISNEICPK--DNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVN 175 (634)
Q Consensus 108 ~~ef~el~~qI~~Lc~eL~~~--~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~ 175 (634)
...|.....-+.-||.-...- ..|.........-....+..|+..+..|..-+.+|...+.+++..++
T Consensus 154 ~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 154 RRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777666665321100 00111000111112477888888888888888889988888877655
No 140
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.06 E-value=5.2e+02 Score=25.66 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 045523 143 EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQE 222 (634)
Q Consensus 143 ~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Lee 222 (634)
...+..++..|..+++.+.+-...+..+-..+..+=..+.. ....|..|...+..|+.
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~----------------------~~~~l~~l~~~~~~L~~ 130 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE----------------------KERRLAELEAELAQLEE 130 (194)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHH----------------------HHHHHHHHHHHHHHHHH
Confidence 35666777777777777776666665555544433332211 13556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045523 223 VKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELV 302 (634)
Q Consensus 223 eK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI 302 (634)
.-..+...+.+....+..|=+-+ ... .-.+..++..+.+|+.--...++.++
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~-------~~L---------------------~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDEL-------QAL---------------------QLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555554332222 111 11345677777788877777777777
Q ss_pred HHHHHHHH
Q 045523 303 LKKKLELA 310 (634)
Q Consensus 303 ~k~R~ELe 310 (634)
.++..+-+
T Consensus 183 ~~k~~eAe 190 (194)
T PF08614_consen 183 QRKAQEAE 190 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665544
No 141
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.05 E-value=8.6e+02 Score=28.24 Aligned_cols=116 Identities=9% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 045523 106 DRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDF 185 (634)
Q Consensus 106 eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df 185 (634)
.|+.....+..-+..+...|.+.. . ..+. .....|......+..+ ++.++..+.+....+.....++..++
T Consensus 219 ~~L~n~e~i~~~~~~~~~~L~~~~--~---~~~~-~~~~~l~~~~~~l~~~---~d~~~~~~~~~l~~~~~~l~d~~~~l 289 (563)
T TIGR00634 219 QRLSNLEKLRELSQNALAALRGDV--D---VQEG-SLLEGLGEAQLALASV---IDGSLRELAEQVGNALTEVEEATREL 289 (563)
T ss_pred HHHhCHHHHHHHHHHHHHHHhCCc--c---cccc-CHHHHHHHHHHHHHHh---hhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666664321 0 0000 1245555555555555 55566655555555444444443333
Q ss_pred hhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 186 KDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVEL 241 (634)
Q Consensus 186 ~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eL 241 (634)
..-.. ...+.+..++.++..+..++..+...-..+.++...+..+
T Consensus 290 ~~~~~-----------~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l 334 (563)
T TIGR00634 290 QNYLD-----------ELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKI 334 (563)
T ss_pred HHHHH-----------hCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33221 2244567788888777777766655444444444444433
No 142
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=31.73 E-value=6.1e+02 Score=26.37 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 169 KHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSL 238 (634)
Q Consensus 169 el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L 238 (634)
.....+......|+.+..... ...|+..... . +-....+..|+..+.++++.+.+|..-+..+...+
T Consensus 105 ~~~~~~~~~l~~L~~~~~~L~-~~lp~~~~~~-~-~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 105 SKLESIEENLELLSGPIEELE-ASLPSSSPSD-S-PQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH-HHS--B---S-S-GSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChhhHH-hhCCCCCccc-c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445566776665432 2345443211 1 22378999999999999999999999888776533
No 143
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=31.12 E-value=7.2e+02 Score=27.06 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----C-C---------C--CCCCHHHHHHHHHHHHH
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHC----D-W---------T--AGGNLRDKLKTITPLLE 98 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~----~-~---------~--~~~tL~eqL~~l~~~LE 98 (634)
...+|....++. .|.. ...+..+..++......|++|..-. . + . ...++...+..+.....
T Consensus 7 a~S~YsE~ka~l--vr~e-~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~~ 83 (356)
T cd09237 7 KESLYSEEKAKL--LRAE-VERVEVANEEYASFLEYLNLPKLLVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQSA 83 (356)
T ss_pred HHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHHH
Confidence 457787766654 3334 4778888899999999999874210 0 0 0 11122233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 99 DMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSE---QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVN 175 (634)
Q Consensus 99 eLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~---e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~ 175 (634)
.....-.+-...+..=..++..+-..+|... .. .....++. +++..|+..|..-..- =.++......+.
T Consensus 84 ~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~W---tr-~~S~~~~~~l~~~~~k~~~~L~~A~~S----D~~l~~~~~~~~ 155 (356)
T cd09237 84 SWVNEIDSSYNDLDEEMKEIEKMRKKILAKW---TQ-SPSSSLTASLREDLVKLKKSLVEASAS----DEKLFSLVDPVK 155 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cc-ccchhhhHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHH
Confidence 4333334444444444444555555555532 11 11222332 3333444433333222 223444444455
Q ss_pred HHHHHhCCChhhhhhhc-cCC-------CCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 176 SLCMVLGLDFKDTVCKI-HPT-------LNDPKASK---DVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLV 239 (634)
Q Consensus 176 ~L~~eLg~df~~~v~ev-hps-------l~d~~~s~---~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 239 (634)
.....|..+....-.-+ .|+ +.|.+.+. .+ ...+..|+..+.+|+..|.+|...+++|+..++
T Consensus 156 ~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~-~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 156 EDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTV-LKQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred HHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544443211101 022 22111000 01 356899999999999999999999999987765
No 144
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=30.91 E-value=5.9e+02 Score=25.93 Aligned_cols=169 Identities=12% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccc
Q 045523 57 IALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIE 136 (634)
Q Consensus 57 Ia~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~ 136 (634)
..++.+.+..+......-.+... .-..-+...+.|+.-...+..++.+=.+++..=..++..-|.+|...
T Consensus 17 ~e~lk~~v~~~~~~Y~~~vvTee--~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~-------- 86 (215)
T PF07083_consen 17 FEELKAEVDEAVEKYKGYVVTEE--NIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAP-------- 86 (215)
T ss_pred HHHHHHHHHHHHHHhCCcccChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 045523 137 DEADLSEQRLKELRSQLAYLQE-EKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMAT 215 (634)
Q Consensus 137 d~~dLS~e~LeeLk~~L~~Lqk-EKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~ 215 (634)
=.+-.+.+...+..+.. ++..|...+..+.. .+|...|+++...-.-+.++..+. +.++.. +++.+..
T Consensus 87 -----i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~---~~~~~~~v~~~~fe~~~~~~wlnk--s~s~kk-~~eei~~ 155 (215)
T PF07083_consen 87 -----IDEASDKIDEQIKEFEEKEKEEKREKIKEYFE---EMAEEYGVDPEPFERIIKPKWLNK--SYSLKK-IEEEIDD 155 (215)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCChHHHhhhcchHHhhc--CCcHHH-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 045523 216 TIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLE 250 (634)
Q Consensus 216 ~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~e 250 (634)
.+..+...........+.....+.. .++|..
T Consensus 156 ~i~~~~~~~~~~~~~~~~i~~~A~~----~~l~~~ 186 (215)
T PF07083_consen 156 QIDKIKQDLEEIKAAKQAIEEKAEE----YGLPAD 186 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcH
No 145
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=30.71 E-value=3.1e+02 Score=22.67 Aligned_cols=75 Identities=24% Similarity=0.276 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 045523 140 DLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQS 219 (634)
Q Consensus 140 dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~ 219 (634)
..+.+.+..+...+..++.+...+...+..+...-..| ...+.+....+ ...+..|......
T Consensus 30 ~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i-----------------~~~~~~l~~~w~~ 91 (105)
T PF00435_consen 30 GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEI-----------------QEKLEELNQRWEA 91 (105)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHH-----------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHH-----------------HHHHHHHHHHHHH
Confidence 44678888888899999999888888888877766666 44432222222 3556666666666
Q ss_pred HHHHHHHHHHHHH
Q 045523 220 LQEVKIQRMQKLQ 232 (634)
Q Consensus 220 LeeeK~~R~~kl~ 232 (634)
|...-..|...++
T Consensus 92 l~~~~~~r~~~Le 104 (105)
T PF00435_consen 92 LCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 6666566655554
No 146
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.40 E-value=2.8e+02 Score=29.61 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=23.8
Q ss_pred hhHHhhH----HHHHHHHHHHHHHHHHHHhh--hhhHHHHhhhhh
Q 045523 385 VRLISML----EDYSCMRQEKELERQRQKDH--RKLQVQLIAEQE 423 (634)
Q Consensus 385 ~rLl~~l----ee~~~~r~eKEeEK~r~R~~--Kk~q~ql~~e~e 423 (634)
++|+..+ +.....|..|++||..--.| |.+++|...|..
T Consensus 377 vkllkf~fekieareerrkqkeeeklk~e~qkikeleek~~eeed 421 (445)
T KOG2891|consen 377 VKLLKFEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEED 421 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666543 45566777788888775556 556666444433
No 147
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.40 E-value=4e+02 Score=30.59 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 40 GRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPG-HCD------WTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFL 112 (634)
Q Consensus 40 r~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~-~~~------~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~ 112 (634)
+..+.+++...+++...++..++++. ++..++.... ... ......+.+.+..+..++.+++.+..+--.++.
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAK-FLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666653 3344442110 000 001224667788888999999988888888888
Q ss_pred HHHHHHHHHHHHhC
Q 045523 113 QVLNQLQIISNEIC 126 (634)
Q Consensus 113 el~~qI~~Lc~eL~ 126 (634)
++..++..+-.+|.
T Consensus 156 ~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 156 ELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877764
No 148
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.34 E-value=1.2e+03 Score=29.29 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 45 DAKISRAQLLRAIALSEAEVADIC 68 (634)
Q Consensus 45 e~~~~K~~L~qsIa~~~~EL~~L~ 68 (634)
+....|.+|++.+++++.+|..-.
T Consensus 266 qlqEfkSkim~qqa~Lqrel~raR 289 (1243)
T KOG0971|consen 266 QLQEFKSKIMEQQADLQRELKRAR 289 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666654443
No 149
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.26 E-value=4.2e+02 Score=29.80 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHH
Q 045523 282 YVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAK 353 (634)
Q Consensus 282 ~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLK 353 (634)
.+|+.|+-+-++-.. ++. ..+.+|..++.+|.|--.+|.. |-.|.++.|...|.+++
T Consensus 262 rLEeqlNd~~elHq~---Ei~-~LKqeLa~~EEK~~Yqs~eRaR-----------di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 262 RLEEQLNDLTELHQN---EIY-NLKQELASMEEKMAYQSYERAR-----------DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHHHHHhHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHH
Confidence 344444444443322 332 3678888999988777777752 44788899999998888
No 150
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=30.21 E-value=4.7e+02 Score=24.62 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 045523 142 SEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQ 221 (634)
Q Consensus 142 S~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Le 221 (634)
+...+..+...++.++.+...+...+..+...-..|....+ .....+ ...++.|...-..|.
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-~~~~~i-----------------~~~~~~l~~~w~~l~ 92 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH-PDAEEI-----------------QERLEELNQRWEELR 92 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC-CChHHH-----------------HHHHHHHHHHHHHHH
Confidence 67788888888899999988888888888876666666554 111111 467777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 045523 222 EVKIQRMQKLQHLATSLVELWNLMD 246 (634)
Q Consensus 222 eeK~~R~~kl~~L~~~L~eLW~~L~ 246 (634)
..-..|...++.....+..++..+.
T Consensus 93 ~~~~~r~~~L~~~~~~~~~~~~~~~ 117 (213)
T cd00176 93 ELAEERRQRLEEALDLQQFFRDADD 117 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777666666655544
No 151
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=29.76 E-value=5.4e+02 Score=25.19 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHH-H
Q 045523 158 EEKSSRLRKVMKHLSNVNSLCMVL---GLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRM-QKL-Q 232 (634)
Q Consensus 158 kEKs~Rl~kv~el~~~I~~L~~eL---g~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~-~kl-~ 232 (634)
....+|..++.++...+..|-.++ .+|+.+++..+. ...=..+...+....+.-..+. ... +
T Consensus 22 ~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i~-------------~~~~~~~~~~f~~~a~~L~~~~g~s~~e 88 (171)
T PRK08307 22 KRYKERPRQLRELKAALQSLEAEIMYGHTPLPEALENIA-------------KQSPKPISTLFQRFSERLESGEGETAYE 88 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH-------------HccchhHHHHHHHHHHHHHhCCCCCHHH
Confidence 456789999999999988888886 455556554431 0010111222222211111111 112 3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhhccccCC
Q 045523 233 HLATSLVELWNLMDTPLEEQEMFHNITSKIAAL 265 (634)
Q Consensus 233 ~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S 265 (634)
.+...+..+|..+....++++.+...-..++.|
T Consensus 89 aw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~ 121 (171)
T PRK08307 89 AWEKALEENWKNTALKKEDIEILLQFGKTLGQS 121 (171)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcC
Confidence 467888999999999999999998877666643
No 152
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.71 E-value=6.8e+02 Score=28.18 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHH
Q 045523 220 LQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLE 291 (634)
Q Consensus 220 LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLe 291 (634)
+++.-.-...++..|...|...|.+|..-..|| |..+ .+.|+.++.-|.+||
T Consensus 267 lNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eR--aRdi------------------~E~~Es~qtRisklE 318 (395)
T PF10267_consen 267 LNDLTELHQNEIYNLKQELASMEEKMAYQSYER--ARDI------------------WEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HhHH------------------HHHHHHHHHHHHHHH
Confidence 334445566778888999999999997765554 5444 568888888888888
No 153
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.22 E-value=1e+03 Score=28.11 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 87 RDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIIS 122 (634)
Q Consensus 87 ~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc 122 (634)
-+.+..++.+|+.++....++.++..-++-|++.|-
T Consensus 163 y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele 198 (557)
T COG0497 163 YQAWKQARRELEDLQEKERERAQRADLLQFQLEELE 198 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777888888888888888877777777765
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.17 E-value=5e+02 Score=28.72 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 38 VYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQ 117 (634)
Q Consensus 38 vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~q 117 (634)
.+...+.+++..=++|.++|...-..|..--.-|+..--+... .-....++|+.++.++.+...--.+|.+++.++.++
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~-eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee 309 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQ-EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEE 309 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444445555555556666665555555554444431100000 112333444555555555555555666666666666
Q ss_pred HHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHH
Q 045523 118 LQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEE 159 (634)
Q Consensus 118 I~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkE 159 (634)
++.+-.+|.... ..+ +|. .-|-.++.-|..|++|
T Consensus 310 Le~vK~emeerg--~~m----tD~--sPlv~IKqAl~kLk~E 343 (359)
T PF10498_consen 310 LEQVKQEMEERG--SSM----TDG--SPLVKIKQALTKLKQE 343 (359)
T ss_pred HHHHHHHHHHhc--CCC----CCC--CHHHHHHHHHHHHHHH
Confidence 666666664431 111 122 2345566666666666
No 155
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.04 E-value=6.1e+02 Score=25.93 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 92 TITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADL-SEQRLKELRSQLAYLQEEKSSRLRKVMKH 170 (634)
Q Consensus 92 ~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dL-S~e~LeeLk~~L~~LqkEKs~Rl~kv~el 170 (634)
-|..+|.+...+-..+..++..++.++....+.+........ ...+..- -.-.|+....+|+....|.+--..++..+
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~-~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~l 92 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ-ELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQL 92 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhh
Confidence 444566666667777778888888888777777765521000 0000000 12344555566666665555555556666
Q ss_pred HHHHHHHHHHhC
Q 045523 171 LSNVNSLCMVLG 182 (634)
Q Consensus 171 ~~~I~~L~~eLg 182 (634)
-.++..|-..+.
T Consensus 93 e~El~~Lr~~l~ 104 (202)
T PF06818_consen 93 EAELAELREELA 104 (202)
T ss_pred HHHHHHHHHHHH
Confidence 656666655553
No 156
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.00 E-value=1.3e+03 Score=29.35 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhhhh---hhhhHhhhcC-CCCHHHHHHH--HHHHHHHHHHHHHhchHHHHHHHHHH
Q 045523 297 KMKELVLKKKLELAEILRKMHTVTETVG---DFSIEAIESG-SMDFMDLLEQ--IDLQIAKAKEEASSRKEILEKVEKWF 370 (634)
Q Consensus 297 ~mkeLI~k~R~ELeeLWdk~~~s~eer~---~F~~~~idsg-~~D~EeLL~~--~E~EI~rLKe~~~srK~Ile~Vekw~ 370 (634)
.+...|++...|...|-..|-++.=.-- . .++=+.++ .+|+..|=.. +...|.-..+......|-+..+++..
T Consensus 881 ~~es~ie~~~~er~~lL~~ckl~~I~vPl~~g-s~~d~~~~ieidy~~L~~~y~L~~kl~e~~~~l~~~~Pn~kA~~~~d 959 (1141)
T KOG0018|consen 881 SIESKIERKESERHNLLSKCKLEDIEVPLSSG-SMDDIVIGIEIDYSGLPREYKLQQKLEEKQSVLNRIAPNLKALERLD 959 (1141)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhccccccccCC-CccccceecccccccccHHHHHHHHHHHHHHHHHHhCcchHHHhhhh
Confidence 4566677777777777777755432211 1 00000011 2333222221 44555555566666666666666663
Q ss_pred HHhhhhhHHHHhhchhHHhhHHHHHHHHHH
Q 045523 371 TAREEESWLEEYNRVRLISMLEDYSCMRQE 400 (634)
Q Consensus 371 sl~eEe~wLeEynr~rLl~~lee~~~~r~e 400 (634)
.+ ++..+-++|...|.+
T Consensus 960 ~v-------------~~~~~~~EfE~ark~ 976 (1141)
T KOG0018|consen 960 EV-------------RFQEINEEFEAARKE 976 (1141)
T ss_pred hH-------------HHHHhhHHHHHHHHH
Confidence 33 223444666666644
No 157
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=28.62 E-value=3.2e+02 Score=28.71 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 045523 143 EQRLKELRSQLAYLQEEKSS------R-LRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMAT 215 (634)
Q Consensus 143 ~e~LeeLk~~L~~LqkEKs~------R-l~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~ 215 (634)
..-++.+...+.+|...... + ...|-++.-.+.+++..+|+|+..++. .+..++..
T Consensus 154 ~~~~~k~~EE~~El~~a~~~~~~~~~~ieeElGDlLFalvnlAr~~giDpE~ALr-----------------~a~~KF~~ 216 (248)
T TIGR00444 154 SPVWDKVYEELDEVMYEARQAVVEQNKLEEEMGDLLFATVNLARHLKTDAEIALQ-----------------KANEKFER 216 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-----------------HHHHHHHH
Confidence 45566677777777665532 1 457888888888999999999977662 44555555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 045523 216 TIQSLQEVKIQRMQKLQHL-ATSLVELWNL 244 (634)
Q Consensus 216 ~l~~LeeeK~~R~~kl~~L-~~~L~eLW~~ 244 (634)
.....+..-..+=..+.++ ..++..||+.
T Consensus 217 Rf~~~E~~~~~~g~~~~~~slee~~~lW~~ 246 (248)
T TIGR00444 217 RFREVERIVAARGLELTGVDLEEMEELWQQ 246 (248)
T ss_pred HHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 5555544444433345554 4788888874
No 158
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=28.51 E-value=7.7e+02 Score=26.55 Aligned_cols=196 Identities=12% Similarity=0.172 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---CC-CCCCHHHH---------HHHHHHHHHHHH
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCD---WT-AGGNLRDK---------LKTITPLLEDMR 101 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~---~~-~~~tL~eq---------L~~l~~~LEeLr 101 (634)
...+|....++. .|..+...+..+-.++......|++|..-.. +. -..+ .+. ...+...++.|.
T Consensus 7 a~s~Y~E~k~~l--vr~e~~~~~e~~~~~l~~~L~slnLP~sl~~l~~~~~lP~~-~~~~~~i~~~gg~~~l~~~~~~l~ 83 (342)
T cd08915 7 SASAYNERQDDY--VREHIVEPIEALNKLLNSFLAERNLPASIDDLQKPENLPDS-IQHSQEIIEEGGLDNIEQSFKELS 83 (342)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHhcCCCCCCch-HHHHHHHHccCcHHHHHHHHHHHH
Confidence 457787766654 4455568888999999999999998753111 10 0011 111 234444555554
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 045523 102 QRKIDRKNQFLQVLNQL---QIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKS---SRLRKVMKHLSNVN 175 (634)
Q Consensus 102 k~K~eR~~ef~el~~qI---~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs---~Rl~kv~el~~~I~ 175 (634)
.....-...|.+....+ ..-|..+... |.........|..--..|+..+..++.-.. .-=..+......+.
T Consensus 84 ~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k---~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~ 160 (342)
T cd08915 84 KLRQNVEELLQECEELLEEEAAEDDQLRAK---FGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESID 160 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---hCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444443333322 2222222211 100000112243444455555555443221 11223444455555
Q ss_pred HHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 176 SLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLV 239 (634)
Q Consensus 176 ~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 239 (634)
.....|+.+..... ...|+..++. ...+ ...+..|...+.+|+..|.+|..-+++|+..+.
T Consensus 161 ~~l~lL~~~~~~l~-~~~Ps~~~~~-~~~~-~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~ 221 (342)
T cd08915 161 PNLVLLCGGYKELK-AFIPSPYPAL-DPEV-SEVVSSLRPLLNEVSELEKERERFISELEIKSR 221 (342)
T ss_pred HHHHHhcCChHHHH-HhCCCccccC-Cchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66667766664432 2234221111 1111 367899999999999999999999999877644
No 159
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=28.31 E-value=1.7e+03 Score=30.44 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=112.5
Q ss_pred hhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 045523 5 IKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGG 84 (634)
Q Consensus 5 ~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~ 84 (634)
.-|..|..-|+++--.-.++...|++- ..-..+.++++++.+.+..|-++|.-.... .+.
T Consensus 1348 ~kl~~L~~~W~~Le~~t~~Kg~~L~qA----------------~~q~~~~qs~~D~~~~l~~le~qL~S~D~G----~DL 1407 (2473)
T KOG0517|consen 1348 KKLRELHKQWDELEKTTQEKGRKLFQA----------------NRQELLLQSLADAKKKLDELESQLQSDDTG----KDL 1407 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHHHHHHHHHHHHHHHHHHhcCCCCC----cCc
Confidence 457889999999877777777777665 345678899999999999999999865432 122
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045523 85 NLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRL 164 (634)
Q Consensus 85 tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl 164 (634)
+--. .+-.+...|..+-..|-+++.+++++-..+..+=. . .+.=.+.-..+...+..|+.=..+|.
T Consensus 1408 ~Svn---~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~-~----------a~~I~~~~~~v~~Rf~~L~~Pl~~R~ 1473 (2473)
T KOG0517|consen 1408 TSVN---DLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGH-S----------AENIEETTLAVLERFEDLLGPLQERR 1473 (2473)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCc-c----------hhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2221 33334444445555566677777776655542211 0 01111222334444445555555566
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 165 RKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATS 237 (634)
Q Consensus 165 ~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~ 237 (634)
..+..-+. +|.+|-.++..+.= |.|.-|.-. +. ..+=+.-+...|.+..+.|+.+-....=.|+++...
T Consensus 1474 ~~Le~S~e-~hQf~~dvddE~~W-V~ErlP~A~-s~-d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl~~ 1542 (2473)
T KOG0517|consen 1474 KQLEASKE-LHQFVRDVDDELLW-VAERLPLAS-ST-DYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVLER 1542 (2473)
T ss_pred HHHHHHHH-HHHHHHhhhHHHHH-HHhhCccCC-ch-hhccChHHHHHHHHHhHHHHHHHHhcchHHHHHHHH
Confidence 66655554 88888877665522 333222111 11 222334566667777777776666655555555443
No 160
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.28 E-value=6.2e+02 Score=25.36 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 045523 204 DVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTP 248 (634)
Q Consensus 204 ~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip 248 (634)
.+|++-+..|...+..|++.+..-.+.|...-+.|.+|-.-|-+|
T Consensus 75 ~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~e 119 (201)
T KOG4603|consen 75 MVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTE 119 (201)
T ss_pred CCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 458899999999999999999998888999999999888777554
No 161
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.72 E-value=8.2e+02 Score=26.59 Aligned_cols=145 Identities=15% Similarity=0.147 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 045523 143 EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQE 222 (634)
Q Consensus 143 ~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Lee 222 (634)
--.++.|+..+..|+.|-..=..++..+...-..+-.. -...|.+. ...+.-.+..|+.|...+.+-.+
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek----EqqLv~dc-------v~QL~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK----EQQLVLDC-------VKQLSEANQQIASLSEELARKTE 227 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH----HHHHHHHH-------HHHhhhcchhHHHHHHHHHHHHH
Confidence 46788888999888887655444555554332211111 01112111 11233346778888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045523 223 VKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELV 302 (634)
Q Consensus 223 eK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI 302 (634)
+-....++|-.|.++|..|=.++.--.-|-+...... ..+.+.=..+.+|+.-|++-++..+.-|.
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L--------------~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL--------------QASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888888777666543322222221111 11266777888998888888888777776
Q ss_pred HHHHHHHHHHH
Q 045523 303 LKKKLELAEIL 313 (634)
Q Consensus 303 ~k~R~ELeeLW 313 (634)
+ .+.+|..+-
T Consensus 294 E-aQEElk~lR 303 (306)
T PF04849_consen 294 E-AQEELKTLR 303 (306)
T ss_pred H-HHHHHHHhh
Confidence 5 777776653
No 162
>PF09246 PHAT: PHAT; InterPro: IPR015327 The PHAT (pseudo-HEAT analogous topology) domain assumes a structure consisting of a layer of three parallel helices packed against a layer of two antiparallel helices, into a cylindrical shaped five-helix bundle. It is found in the RNA-binding protein Smaug, where it is essential for high-affinity RNA binding []. ; PDB: 1OXJ_A.
Probab=27.65 E-value=32 Score=31.30 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhhhhhccccCccccCCCcccCCcccccccccc
Q 045523 541 SSKANIANFLEDKKRTHNGTSLKAVPSVAVTPSKQIVACNEG 582 (634)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (634)
.+|+++.|..|..+ +|..||+||+-..+-|
T Consensus 15 G~~~~L~~v~EELt------------nIv~TPMKP~~~~~pe 44 (108)
T PF09246_consen 15 GQKMQLSNVLEELT------------NIVLTPMKPSEEDQPE 44 (108)
T ss_dssp T--S-HHHHHHHHH------------TTTTS----TT--S-G
T ss_pred CcHHHHHHHHHHHH------------HHhcCCCCccCCCCcc
Confidence 46778889999987 8999999999544433
No 163
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.34 E-value=5e+02 Score=28.11 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 202 SKDVSNDTIEKMATT--------IQSLQEVKIQRMQKLQHLATSLVE 240 (634)
Q Consensus 202 s~~LS~~~L~~L~~~--------l~~LeeeK~~R~~kl~~L~~~L~e 240 (634)
...+|.++..-|... +.+|-.+|..-+.+|+.|..+|.+
T Consensus 198 ~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 198 RALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred ccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888777665 778888888777778877777753
No 164
>PRK01156 chromosome segregation protein; Provisional
Probab=27.20 E-value=1.2e+03 Score=28.48 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045523 85 NLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEI 125 (634)
Q Consensus 85 tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL 125 (634)
.+.+.++.+...++++.++..+--.++.++...+..|...+
T Consensus 406 ~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~ 446 (895)
T PRK01156 406 AIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNM 446 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555677777777777777777777777776666666533
No 165
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.93 E-value=1.1e+03 Score=27.83 Aligned_cols=285 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 045523 55 RAIALSEAEVADICSTLGEQPGHCDWT--AGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMY 132 (634)
Q Consensus 55 qsIa~~~~EL~~L~~eLge~~~~~~~~--~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~ 132 (634)
+++..++.++..|..+|........+. -+..|+++-..+..++++|....+--..++..++..+-.....=-... .-
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~-~~ 86 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA-RD 86 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q ss_pred ccccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHH
Q 045523 133 KIIEDEADL--SEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTI 210 (634)
Q Consensus 133 ~~~~d~~dL--S~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L 210 (634)
...-.++-| |-.+=..|-..+-.|+.|...-.+.+....++ .+-+..+|..+.+ +..-...--
T Consensus 87 g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E------------~erl~~~~sd~~e---~~~~~E~qR 151 (772)
T KOG0999|consen 87 GEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEE------------NERLEKVHSDLKE---SNAAVEDQR 151 (772)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhh---cchhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHH
Q 045523 211 EKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRL 290 (634)
Q Consensus 211 ~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRL 290 (634)
-+|...+..++..-..-+....+|-..=+.|-.....=-.-+-.|......|.--+.+ ...++.--.|..||
T Consensus 152 ~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe--------~elln~q~ee~~~L 223 (772)
T KOG0999|consen 152 RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEE--------TELLNSQLEEAIRL 223 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHH----------HHHHHHHHHHhcCCChhhhhhhhhH--hhhcC---CCCHH----------------
Q 045523 291 EQLKSSKMKELVLK----------KKLELAEILRKMHTVTETVGDFSIE--AIESG---SMDFM---------------- 339 (634)
Q Consensus 291 eeLK~~~mkeLI~k----------~R~ELeeLWdk~~~s~eer~~F~~~--~idsg---~~D~E---------------- 339 (634)
.++-..-|.+-.+- .+.||..+-+.-+++--.-..|... |.+.| +-|++
T Consensus 224 k~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~te 303 (772)
T KOG0999|consen 224 KEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTE 303 (772)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhh
Q ss_pred -------HHHHHHHHHHHHHHHHHHhchHHH
Q 045523 340 -------DLLEQIDLQIAKAKEEASSRKEIL 363 (634)
Q Consensus 340 -------eLL~~~E~EI~rLKe~~~srK~Il 363 (634)
-+-+.+..+|.+|++...++.-++
T Consensus 304 l~~p~sDl~sel~iseiqkLkqqL~smErek 334 (772)
T KOG0999|consen 304 LQGPVSDLFSELNISEIQKLKQQLMSMEREK 334 (772)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=26.90 E-value=4.1e+02 Score=22.90 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCH-----HHHHHHHHHHHHHHHHHHH
Q 045523 302 VLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDF-----MDLLEQIDLQIAKAKEEAS 357 (634)
Q Consensus 302 I~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~-----EeLL~~~E~EI~rLKe~~~ 357 (634)
|+..+.||+-+-+...+|-.. |+. |..|+.|- ...|++++.||.+||+...
T Consensus 12 IE~~~~eIe~LL~~AkiSl~D---yIm--iKRGS~DmPe~l~~~~~~QideeV~~LKe~Id 67 (79)
T PF10398_consen 12 IENAQEEIEILLKIAKISLVD---YIM--IKRGSQDMPEHLNMAFLAQIDEEVEKLKEHID 67 (79)
T ss_dssp HHHHHHHHHHHHHHHT--HHH---HHH--HHTTSS---TTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHH---HHH--hcccCCcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 677889999998888777532 221 34565552 7899999999999998754
No 167
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=26.85 E-value=1.5e+03 Score=29.50 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC----CCHHHHHHHHHHHHHH
Q 045523 24 RDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAG----GNLRDKLKTITPLLED 99 (634)
Q Consensus 24 Rd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~----~tL~eqL~~l~~~LEe 99 (634)
|.+.|.+|+. .+++.....+.+-..++.+...+..|-.+...-|....-... ..-...+.....+++.
T Consensus 740 R~~ri~el~~--------~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~ 811 (1353)
T TIGR02680 740 RLRRIAELDA--------RLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELAR 811 (1353)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777764 455555556666666666666667776666543432110000 0111235566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045523 100 MRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKS 161 (634)
Q Consensus 100 Lrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs 161 (634)
.+.+.....+.+.....++...|..++.+.. .+...--.+-|+.|...++.|+....
T Consensus 812 a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~-----~~~l~~~~~aL~~y~~~l~~l~~~~~ 868 (1353)
T TIGR02680 812 AARKAAAAAAAWKQARRELERDAADLDLPTD-----PDALEAVGLALKRFGDHLHTLEVAVR 868 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888888888888888876521 01011123555566666666654433
No 168
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.78 E-value=6.1e+02 Score=24.84 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 38 VYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGE 73 (634)
Q Consensus 38 vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge 73 (634)
++..+++-.+..|.++..=-+.+..|+..|-.+|.+
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~e 38 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEE 38 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777777777777777666654
No 169
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=26.77 E-value=8.8e+02 Score=26.64 Aligned_cols=190 Identities=14% Similarity=0.221 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHH----HHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 045523 144 QRLKELRSQLAYLQEEKSS------RLRKVMK----HLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKM 213 (634)
Q Consensus 144 e~LeeLk~~L~~LqkEKs~------Rl~kv~e----l~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L 213 (634)
+.+.+++..++.|++.+.+ +++.+.. ....|..-....++|..-++.. .+.....|+.+.++++
T Consensus 107 ~d~~~~~k~i~~le~~i~~~~~~~~~ik~~v~~~~~~~~~ir~~s~~~~~~iv~~IL~------~~~~~p~L~~~~~~~v 180 (341)
T PF12825_consen 107 DDIKEFEKEIDKLEKKIGDSPEMCEKIKAFVYAPREEKDEIREESEEENEDIVVAILR------SSDIEPKLSPEQLQRV 180 (341)
T ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHh------CCCCCCCCCHHHHHHH
Confidence 3466777777777776655 2222221 2222333344455554333322 1122567888888888
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHH
Q 045523 214 ATTIQSLQEVKIQR------MQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEV 287 (634)
Q Consensus 214 ~~~l~~LeeeK~~R------~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EV 287 (634)
...-.........+ ...-..+...|.++|..+ +-.-.++.+..+.|. ..+
T Consensus 181 ~~sy~~~~~~~~~~~~~~~~~~~~a~lf~~lk~yl~l~-~r~RDk~~~~~l~~e---------------~~~-------- 236 (341)
T PF12825_consen 181 LESYKAWKNAVESVPDDDGEENEDAWLFSDLKEYLKLY-LRKRDKEQMIQLWCE---------------PEL-------- 236 (341)
T ss_pred HHHHHHHHHhhhccccCCCccchhhHHHHHHHHHHHHH-HHHhhHHHHHHHHcC---------------hhH--------
Confidence 87777776655333 222345667777777765 334455666666542 011
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhh--hhhhHhhh--------cC-------CCCHHHHHHHHHHHHH
Q 045523 288 SRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVG--DFSIEAIE--------SG-------SMDFMDLLEQIDLQIA 350 (634)
Q Consensus 288 eRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~--~F~~~~id--------sg-------~~D~EeLL~~~E~EI~ 350 (634)
.+.+|++|.---.=|..+.....++.--.. .|+.++|. .+ ..+.-+||+.|+.-.-
T Consensus 237 -------~qllkd~v~ifYepl~rv~k~a~l~~~l~d~q~Fi~DlI~~~~~~~~~~~~~~~~~~V~~~v~Ll~rH~~~~y 309 (341)
T PF12825_consen 237 -------TQLLKDLVTIFYEPLVRVHKAADLSEALSDFQKFIDDLIKLVEKLRNGSGSSDPFPSVEDFVDLLDRHEQSFY 309 (341)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Confidence 122334443333444444444444433322 44444441 01 1234789999998888
Q ss_pred HH-HHHHHhchHHHHHHHHHH
Q 045523 351 KA-KEEASSRKEILEKVEKWF 370 (634)
Q Consensus 351 rL-Ke~~~srK~Ile~Vekw~ 370 (634)
+. -+.|..-.+||+..-.|-
T Consensus 310 ~FvH~v~~~d~~lf~~l~~W~ 330 (341)
T PF12825_consen 310 KFVHEVHKNDPELFDELIAWI 330 (341)
T ss_pred HHHHHHHHcChHHHHHHHHHH
Confidence 85 444444444888888883
No 170
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.48 E-value=1.2e+03 Score=28.25 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChhh--hhhhccCCCCCCCCCCCCCHHHHHHHHHHH---
Q 045523 144 QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVL-GLDFKD--TVCKIHPTLNDPKASKDVSNDTIEKMATTI--- 217 (634)
Q Consensus 144 e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eL-g~df~~--~v~evhpsl~d~~~s~~LS~~~L~~L~~~l--- 217 (634)
+.|.+.+.-+.+|-.+..+=...-...-..|.++|... ..||.+ ... |-.++.+|.-++
T Consensus 72 e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTt---------------SiT~L~~L~MLv~~v 136 (793)
T KOG2180|consen 72 ENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTT---------------SITTLHRLHMLVTGV 136 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHH---------------HHHHHHHHHHHHHHH
Confidence 45555555555555544433333333444444555443 335522 111 124455554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHH
Q 045523 218 QSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQ 292 (634)
Q Consensus 218 ~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLee 292 (634)
.+|+..-.+| ...+....+....++|. .|..... .+-|.++..-|++++.
T Consensus 137 esL~~l~~kr--~y~e~a~~lqai~~ll~-------~F~~Yk~----------------v~~I~~Ls~si~~~k~ 186 (793)
T KOG2180|consen 137 ESLNALLSKR--SYGEAASPLQAILQLLN-------HFIAYKS----------------VDEIANLSESIDKLKK 186 (793)
T ss_pred HHHHHHHhhc--cHHHHHhHHHHHHHHHH-------HHHHhcc----------------hHHHHHHHHHHHHHHH
Confidence 4554444333 23445555555555552 3654432 5667777766666543
No 171
>PF03359 GKAP: Guanylate-kinase-associated protein (GKAP) protein; InterPro: IPR005026 The protein called postsynaptic density (PSD) is a specialised submembranous structure within which synaptic membrane proteins are linked to cytoskeleton and signalling proteins. Guanylate-kinase-associated protein (PSD-95/synapse-associated protein 90) is one of the major components of PSD, and functions as a scaffold protein for various ion channels and associated signalling molecules.; GO: 0007267 cell-cell signaling
Probab=26.25 E-value=3.1e+02 Score=30.28 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 113 QVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVN 175 (634)
Q Consensus 113 el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~ 175 (634)
.=.+.+..+|...... .++.+++.+-++.++.-+..-+--.++|+++|..|+....
T Consensus 180 ~E~~RL~~lC~~~e~~-------~~~~~lpee~~~~ir~avGqa~LL~~qKf~QF~~L~~~~~ 235 (357)
T PF03359_consen 180 SETERLEGLCAEWEKE-------EEENDLPEEAKGLIRSAVGQARLLMSQKFKQFEGLCQQNE 235 (357)
T ss_pred HHHHHHHHHHHHHHHh-------ccccCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 3345567788877554 3466889999999999999999999999999999998633
No 172
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=25.79 E-value=1.6e+02 Score=27.90 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 45 DAKISRAQLLRAIALSEAEVADICST 70 (634)
Q Consensus 45 e~~~~K~~L~qsIa~~~~EL~~L~~e 70 (634)
+.++.+..|.++|..+..|.+.++.+
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666665544
No 173
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.74 E-value=6.4e+02 Score=25.63 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 50 RAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVL 115 (634)
Q Consensus 50 K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~ 115 (634)
|.++.+-+.-.+.++..+-. |-..... .-..+.+-++.|..+|+.|..--..|..++..|+
T Consensus 134 k~e~EqLL~YK~~ql~~~~~--~~~~~~~---~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEE--GRSKSGK---NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhc--cCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55556666666666666644 3322111 2356777789999999999988888888887764
No 174
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=25.56 E-value=84 Score=34.65 Aligned_cols=86 Identities=28% Similarity=0.321 Sum_probs=50.6
Q ss_pred CHHHHHHHHhhhccccCCcccccCCCcCcHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhhhh
Q 045523 248 PLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKY-VEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDF 326 (634)
Q Consensus 248 p~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~-le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~~F 326 (634)
|.+||+.|......+... .+.|+. ++..++.|+++|++.|.+++. -+|..=|+..+
T Consensus 371 pl~EQ~kI~~~l~~l~~~-----------~d~i~~~~~~~l~~L~~lKqslLqk~ft---G~l~~~~~~~~--------- 427 (461)
T PRK09737 371 PLEEQAEIVRRVEQLFAY-----------ADTIEKQVNNALARVNNLTQSILAKAFR---GELTAQWRAEN--------- 427 (461)
T ss_pred CHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhC---CccccccchhC---------
Confidence 468899987765332100 233433 577888899999999998864 34444443221
Q ss_pred hhHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHhc
Q 045523 327 SIEAIESGSMDF-MDLLEQIDLQIAKAKEEASSR 359 (634)
Q Consensus 327 ~~~~idsg~~D~-EeLL~~~E~EI~rLKe~~~sr 359 (634)
+.++ ++ .++ +.||+.+-+|-+..-....+|
T Consensus 428 -~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (461)
T PRK09737 428 -PSLI-SG-ENSAAALLEKIKAERAASGGKKASR 458 (461)
T ss_pred -cccc-CC-cChHHHHHHHHHHHHhhccCCCccc
Confidence 1111 12 344 899998887766554444433
No 175
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=25.53 E-value=6.1e+02 Score=24.36 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDT 247 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~i 247 (634)
...+-+.......+..+..-...+..+...+..+|..+.-
T Consensus 83 ~i~~~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k 122 (191)
T cd07610 83 LIREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443444555567778888888887744
No 176
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=7.5e+02 Score=25.42 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 045523 63 EVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDM-------RQRKIDRKNQFLQVLNQLQIIS 122 (634)
Q Consensus 63 EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeL-------rk~K~eR~~ef~el~~qI~~Lc 122 (634)
+...|...+...|. +.-|.+. +..|...++++ ...-.-|.++|.-+.--+..+-
T Consensus 131 e~~~l~kvis~~p~-----RsEt~k~-l~el~keleel~~~~~s~~~klelrRkqf~~lm~~~~elQ 191 (222)
T KOG3215|consen 131 EYSALSKVISDCPA-----RSETDKD-LNELKKELEELDDLNNSTETKLELRRKQFKYLMVSTEELQ 191 (222)
T ss_pred HHHHHHHHHhcCCC-----cchhHHH-HHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHH
Confidence 44455555555442 2234433 33344444433 4445667777777666665554
No 177
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=25.43 E-value=23 Score=43.32 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q 045523 25 DKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDW--TAGGNLRDKLKTITPLLEDMRQ 102 (634)
Q Consensus 25 d~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~--~~~~tL~eqL~~l~~~LEeLrk 102 (634)
++....+|. -+.-++.++++....+..+......+..++..|...|.+-...... ....+|..++..++..|++-.+
T Consensus 179 Ek~~K~lE~-qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr 257 (859)
T PF01576_consen 179 EKKRKQLEA-QLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETR 257 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Confidence 334445553 3455677788888888888888888888888888888765433221 1345677788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 103 RKIDRKNQFLQVLNQLQIISNEICP 127 (634)
Q Consensus 103 ~K~eR~~ef~el~~qI~~Lc~eL~~ 127 (634)
.|..-..++..+..++..|-..+..
T Consensus 258 ~k~~L~~~l~~le~e~~~L~eqlee 282 (859)
T PF01576_consen 258 AKQALEKQLRQLEHELEQLREQLEE 282 (859)
T ss_dssp -------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888777776654
No 178
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=25.02 E-value=2.9e+02 Score=33.33 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=18.8
Q ss_pred HHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHH
Q 045523 252 QEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKS 295 (634)
Q Consensus 252 r~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~ 295 (634)
.+....+....+++.-++.+....-.+.++.++.+++.+++...
T Consensus 203 ~~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~ 246 (759)
T PF01496_consen 203 EEKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELE 246 (759)
T ss_dssp HHHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333222335677777777666655444
No 179
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=24.96 E-value=6.8e+02 Score=24.76 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=4.7
Q ss_pred hHHhhHHHHH
Q 045523 386 RLISMLEDYS 395 (634)
Q Consensus 386 rLl~~lee~~ 395 (634)
+|++..++||
T Consensus 76 ~l~a~N~~~N 85 (170)
T PF14943_consen 76 RLMAWNEEWN 85 (170)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 180
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=24.76 E-value=2.3e+02 Score=29.35 Aligned_cols=61 Identities=15% Similarity=0.366 Sum_probs=40.2
Q ss_pred HhhhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 045523 14 WDEVGE--SDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCD 79 (634)
Q Consensus 14 WdEIG~--~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~ 79 (634)
+.++|- -+.+-+.|-.|| ++++..+++--+.-..=++.-.+.+.+...+|..+|.+|+...
T Consensus 19 y~~~g~~l~e~Ql~q~~~Ql-----~~f~~~LeeFA~kH~~ei~knsqFR~~Fq~Mca~IGvDPlas~ 81 (249)
T KOG3341|consen 19 YKEVGTELAEQQLVQMSKQL-----EVFQEALEEFARKHKTEIRKNSQFRNQFQEMCASIGVDPLASG 81 (249)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCccccC
Confidence 455552 333445565666 4677766664444344445567899999999999999998643
No 181
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=24.57 E-value=1.1e+03 Score=27.17 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 143 EQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLG 182 (634)
Q Consensus 143 ~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg 182 (634)
.+.|..|+.++...+.+|..=+..+...+..|..|...|.
T Consensus 40 qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe 79 (522)
T PF05701_consen 40 QEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLE 79 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666777777777777777766664
No 182
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=24.50 E-value=6.6e+02 Score=24.43 Aligned_cols=95 Identities=8% Similarity=0.108 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HH-HH
Q 045523 158 EEKSSRLRKVMKHLSNVNSLCMVL---GLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRM-QK-LQ 232 (634)
Q Consensus 158 kEKs~Rl~kv~el~~~I~~L~~eL---g~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~-~k-l~ 232 (634)
.+..+|...+.++...+..|-.++ .+|..+++..+.- ..=..+...+..+.+.-..+. .. -+
T Consensus 21 ~~~~~R~~~L~~l~~~L~~L~~EI~y~~tpL~eal~~i~~-------------~~~~~~~~~f~~~a~~L~~~~~~~~~~ 87 (170)
T PF09548_consen 21 RRLKRRVRQLRELRRALQLLETEIRYGATPLPEALERISR-------------RSEGPIGEFFERVAERLEKNEGESFAE 87 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh-------------cccchHHHHHHHHHHHHHcCCCCCHHH
Confidence 466788888888888888887776 4555565544310 000112222222221111121 11 34
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhhccccCC
Q 045523 233 HLATSLVELWNLMDTPLEEQEMFHNITSKIAAL 265 (634)
Q Consensus 233 ~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S 265 (634)
.+...+..+|..+....++++.+...-..++.|
T Consensus 88 ~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~ 120 (170)
T PF09548_consen 88 AWEEAVEKLLKESALKKEDKEILLELGKSLGYS 120 (170)
T ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccC
Confidence 467788889999999999999998887777644
No 183
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.50 E-value=7.6e+02 Score=25.12 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HhCCCCCCCccccCCCCCC--HHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDR----KNQFLQVLNQLQIISN----EICPKDNMYKIIEDEADLS--EQRLKELRSQL 153 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR----~~ef~el~~qI~~Lc~----eL~~~~~~~~~~~d~~dLS--~e~LeeLk~~L 153 (634)
+.|+.+|+.|...|......-..| -....-++.|.+.|-+ .|.... . .-...+.++. .+.|+.+..++
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~-~-~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELE-E-GRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhh-c-cCCCCCCCHHHHHHHHHHHHHHH
Confidence 568888888888888888777663 1122333334333322 111110 0 0012233444 58899999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045523 154 AYLQEEKSSRLRKVMKHL 171 (634)
Q Consensus 154 ~~LqkEKs~Rl~kv~el~ 171 (634)
..|+.=...|...+..|.
T Consensus 177 ~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999998888887664
No 184
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.36 E-value=8.1e+02 Score=26.38 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKLQHLATSLV 239 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~ 239 (634)
-+|..|+..+..-+..-..|..+|.+|+.+|.
T Consensus 68 V~iRHLkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34666666666666666778888888888776
No 185
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.27 E-value=4.2e+02 Score=22.03 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 045523 22 NERDKMILEIE 32 (634)
Q Consensus 22 ~eRd~ml~~lE 32 (634)
++|...+..++
T Consensus 21 ~~r~~~i~~~e 31 (79)
T PF05008_consen 21 EQRKSLIREIE 31 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46666555554
No 186
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.92 E-value=3.1e+02 Score=32.44 Aligned_cols=94 Identities=9% Similarity=0.163 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045523 83 GGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSS 162 (634)
Q Consensus 83 ~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~ 162 (634)
.......+..+...++.|..+-.+-...+.+++..|..|-++|..-.. .+.....-..++..+...+..|+++..+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r----~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR----EVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 356777788999999999988888888888888888888877754311 1223344467788888999999988877
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045523 163 RLRKVMKHLSNVNSLCMV 180 (634)
Q Consensus 163 Rl~kv~el~~~I~~L~~e 180 (634)
--..+..|...+..+-..
T Consensus 493 ~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 493 KKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776666533
No 187
>PF12064 DUF3544: Domain of unknown function (DUF3544); InterPro: IPR021931 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 198 to 216 amino acids in length. This domain is found associated with PF00628 from PFAM, PF01753 from PFAM, PF00439 from PFAM, PF00855 from PFAM.
Probab=23.85 E-value=1.4e+02 Score=29.65 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCCCcccccccchhhhhhhhcccccCCCCCCcchh
Q 045523 496 AGSGRRNSEIPGNVVNKSCSSVAAKARKVESKSARKPLSPVSLA 539 (634)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (634)
.|.|--..|.-+-|+.-..- .|+....|| |||+|-.++
T Consensus 49 ~StgEESMD~TASPas~k~g---~ags~~~SP---K~f~p~~~~ 86 (207)
T PF12064_consen 49 YSTGEESMDCTASPASTKTG---PAGSSSGSP---KPFNPQAST 86 (207)
T ss_pred cccccccccccCCCCCCCcC---CCCccCCCC---CCCCCCCCC
Confidence 35666667766666654432 566778899 999998866
No 188
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.80 E-value=3.1e+02 Score=24.30 Aligned_cols=72 Identities=14% Similarity=0.273 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 45 DAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNE 124 (634)
Q Consensus 45 e~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~e 124 (634)
+....+..+...+..++++-..+...+|...-... ....|..+.+.+..++..+ -.++..+..++..++..
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~--~~~~l~~e~~~lk~~i~~l-------e~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGE--DAEELKAEVKELKEEIKEL-------EEQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTC--CTHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcc--cHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHc
Confidence 34456778889999999999999999986432211 2234555555555544444 45666777777777755
Q ss_pred h
Q 045523 125 I 125 (634)
Q Consensus 125 L 125 (634)
|
T Consensus 104 i 104 (108)
T PF02403_consen 104 I 104 (108)
T ss_dssp S
T ss_pred C
Confidence 4
No 189
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.71 E-value=7.4e+02 Score=24.71 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 045523 108 KNQFLQVLNQLQIISNEI 125 (634)
Q Consensus 108 ~~ef~el~~qI~~Lc~eL 125 (634)
..++..++.+.+.|-+.|
T Consensus 169 ~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 169 QEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 190
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.61 E-value=4.3e+02 Score=25.80 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 38 VYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGE 73 (634)
Q Consensus 38 vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge 73 (634)
.+|.+||..++.-.-|-+.....+.|+.....+..+
T Consensus 88 ~vRkkID~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444443
No 191
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.55 E-value=8.4e+02 Score=25.98 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHhhhCCChHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 045523 12 KIWDEVGESDNERDKM---------ILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTA 82 (634)
Q Consensus 12 ~IWdEIG~~e~eRd~m---------l~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~ 82 (634)
.+||-+|-..+-|+.. +.++| ..++..+......-+++.+.+..+..+.+.|-..|--...+
T Consensus 135 ~LydlL~kE~~lr~~R~~a~~r~~e~~~iE----~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E----- 205 (267)
T PF10234_consen 135 SLYDLLGKEVELREERQRALARPLELNEIE----KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQE----- 205 (267)
T ss_pred HHHHHHhchHhHHHHHHHHHcCCcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045523 83 GGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSS 162 (634)
Q Consensus 83 ~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~ 162 (634)
|..-..+|..|+.-+=.-|.+|..+..+++.+.+.-...+. .|+-|+.+|..+...-..
T Consensus 206 -------LER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR--------------Nl~yLe~qle~~~~~e~~ 264 (267)
T PF10234_consen 206 -------LERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR--------------NLDYLEHQLEEYNRREQE 264 (267)
T ss_pred -------HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHhh
Q ss_pred HHH
Q 045523 163 RLR 165 (634)
Q Consensus 163 Rl~ 165 (634)
|++
T Consensus 265 ~~~ 267 (267)
T PF10234_consen 265 RFE 267 (267)
T ss_pred hcC
No 192
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.45 E-value=6.7e+02 Score=27.17 Aligned_cols=35 Identities=0% Similarity=0.055 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 38 VYGRKIDDAKISRAQLLRAIALSEAEVADICSTLG 72 (634)
Q Consensus 38 vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLg 72 (634)
-+|-.|++.+..+..+.+.+......|..|.+++-
T Consensus 224 DWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit 258 (384)
T KOG0972|consen 224 DWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT 258 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 36777888888888888888888888888777664
No 193
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.18 E-value=8.1e+02 Score=24.95 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 86 LRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLR 165 (634)
Q Consensus 86 L~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~ 165 (634)
|.++++.++.+|.+++..-.+|..++.+-..+-.....+|... ...|+.+++.++++...=..
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~-----------------n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE-----------------NQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhC
Q 045523 166 KVMKHLSNVNSLCMVLG 182 (634)
Q Consensus 166 kv~el~~~I~~L~~eLg 182 (634)
+...+...+..=|-..|
T Consensus 161 ~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 161 QLDDKQRTIIMQWFMYG 177 (206)
T ss_pred HHHHHHHHHHHHHHHHc
No 194
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.50 E-value=6.6e+02 Score=26.31 Aligned_cols=176 Identities=12% Similarity=0.074 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhh------hhhh-ccCCC------CCC-CCCCCCCHHH
Q 045523 146 LKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLD--FKD------TVCK-IHPTL------NDP-KASKDVSNDT 209 (634)
Q Consensus 146 LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~d--f~~------~v~e-vhpsl------~d~-~~s~~LS~~~ 209 (634)
|+.++..+..++.+..+-.+.+..|-+.|..+-...+.+ |.+ .+.. +++.. +.+ ....+-+.+.
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 467778888888887777777777777666666553332 211 1111 11110 000 0001112222
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccc--cCCcccc---cCCCcCcH
Q 045523 210 -------IEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKI--AALEPEI---TEPNFLSM 277 (634)
Q Consensus 210 -------L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i--~~S~~ei---~~~~~LS~ 277 (634)
=++++....+|+++..+-.+++..|+.++..|=.= .+--=|+-.|...+.+- ..+...+ +.++.++.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D-N~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~ 159 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD-NVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSP 159 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCC
Confidence 35667777777777777777777776666543210 00012344565554421 1111111 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhh
Q 045523 278 NNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVG 324 (634)
Q Consensus 278 ~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~ 324 (634)
..-.....|.+|....+.+.|-=|..-.+.|-+-.+.. +++-+|.
T Consensus 160 ~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~~R~~~~--L~~~eR~ 204 (248)
T PF08172_consen 160 EPGGSSDVESNRYSSAYEESLNPFAAFRKRERQRRYKR--LSPPERI 204 (248)
T ss_pred CCCCCCchhHHHHHHHHHhccChHHHHhHhhHHHHHhc--CChHHHH
Confidence 11111233445666666666666655555555555443 3444444
No 195
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.49 E-value=1.2e+03 Score=26.66 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHH
Q 045523 212 KMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLE 291 (634)
Q Consensus 212 ~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLe 291 (634)
+....+.+.+++|..-.+-+.+|+.++..|-.+-.+ ......|++ ..-...++.||.||.
T Consensus 357 rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~-------~a~p~rgrs-------------SaRe~eleqevkrLr 416 (502)
T KOG0982|consen 357 RMNDILRRFQEEKEATQELIEELRKELEHLRRRKLV-------LANPVRGRS-------------SAREIELEQEVKRLR 416 (502)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------hhccccCch-------------hHHHHHHHHHHHHhc
Confidence 334444445566666566666676666655432211 122233332 345556888888886
Q ss_pred H
Q 045523 292 Q 292 (634)
Q Consensus 292 e 292 (634)
+
T Consensus 417 q 417 (502)
T KOG0982|consen 417 Q 417 (502)
T ss_pred c
Confidence 4
No 196
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=22.30 E-value=4.6e+02 Score=24.07 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHhcCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhh
Q 045523 313 LRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREE 375 (634)
Q Consensus 313 Wdk~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eE 375 (634)
+..++|+.++-.+|+..+. .+..+..++.+..+.++..+++....-..+.+.++.+...|..
T Consensus 53 lr~~G~sL~eI~~~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 114 (127)
T TIGR02044 53 ARQVGFSLEECKELLNLWN-DPNRTSADVKARTLEKVAEIERKISELQSMRDQLEALAQACPG 114 (127)
T ss_pred HHHCCCCHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567888888777665432 2233446677777778888888888888888888888665543
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.15 E-value=1.2e+03 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDT 247 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~i 247 (634)
+....+|.+..+++++.......++++|..+|..|---|+.
T Consensus 413 ~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 413 DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 34566777778888888888888999999998877655544
No 198
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.00 E-value=1e+03 Score=25.76 Aligned_cols=74 Identities=8% Similarity=0.201 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 41 RKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQI 120 (634)
Q Consensus 41 ~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~ 120 (634)
...++++..--.+-..|......+..+ ....|.--...+...+.+.++.-++..+++.+++.+|..
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~M--------------s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEM--------------SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555 123444456667777777777777888888889998888
Q ss_pred HHHHhCCC
Q 045523 121 ISNEICPK 128 (634)
Q Consensus 121 Lc~eL~~~ 128 (634)
+-..+...
T Consensus 107 y~~~~~~~ 114 (301)
T PF06120_consen 107 YQQQLAEK 114 (301)
T ss_pred HHHHHhcc
Confidence 77776655
No 199
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=21.93 E-value=2.7e+02 Score=22.99 Aligned_cols=15 Identities=33% Similarity=0.827 Sum_probs=9.2
Q ss_pred HhhhCCChHHHHHHH
Q 045523 14 WDEVGESDNERDKMI 28 (634)
Q Consensus 14 WdEIG~~e~eRd~ml 28 (634)
|+++..-.++|+..+
T Consensus 10 We~l~~l~~~R~~ll 24 (84)
T PF05400_consen 10 WEELEELLDERQELL 24 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666566666555
No 200
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=21.80 E-value=1.1e+03 Score=25.78 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC--C---C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 045523 54 LRAIALSEAEVADICSTLGEQPGHCD--W---T--AGGNLRDKLKTITPLLEDMRQRKIDRKNQ-------FLQVLNQLQ 119 (634)
Q Consensus 54 ~qsIa~~~~EL~~L~~eLge~~~~~~--~---~--~~~tL~eqL~~l~~~LEeLrk~K~eR~~e-------f~el~~qI~ 119 (634)
-.....+..|+..+..+||=|....- + . ....-+..+..|-.+|...|.-...+... -.++..+++
T Consensus 57 ~dd~~~f~~Els~~L~El~CPy~~L~~G~~~~rl~~~~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~ 136 (318)
T PF10239_consen 57 PDDAESFLLELSGFLKELGCPYSALTSGDISDRLQSKEDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELK 136 (318)
T ss_pred CchHHHHHHHHHHHHHhcCCCcHHHcCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHH
Confidence 44566688999999999998642211 0 0 11123344667777777666554443332 245666788
Q ss_pred HHHHHhCCCCCCCccccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCC
Q 045523 120 IISNEICPKDNMYKIIEDEADLSE-QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLND 198 (634)
Q Consensus 120 ~Lc~eL~~~~~~~~~~~d~~dLS~-e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d 198 (634)
.+|..|+....+ .+++. .-++.++. .|..+...++-+. +. .|.|
T Consensus 137 ~i~~~L~l~~p~-------~~i~~~~lf~~i~~---------------------ki~~~L~~lp~~~---~~--~PLl-- 181 (318)
T PF10239_consen 137 AICQALGLPKPP-------PNITASQLFSKIEA---------------------KIEELLSKLPPGH---MG--KPLL-- 181 (318)
T ss_pred HHHHHhCCCCCC-------CCCCHHHHHHHHHH---------------------HHHHHHHhcCccc---cC--CCCc--
Confidence 888888876321 12222 22222222 2323333322221 10 1222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 199 PKASKDVSNDTIEKMATTIQSLQEVKIQRMQKL 231 (634)
Q Consensus 199 ~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl 231 (634)
..+|++.-.++|+..-+.|..++.-|.+.+
T Consensus 182 ---~~~L~~~Qw~~Le~i~~~L~~EY~~RR~mL 211 (318)
T PF10239_consen 182 ---KKSLTDEQWEKLEKINQALSKEYECRRQML 211 (318)
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988887653
No 201
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.71 E-value=1e+03 Score=25.65 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=6.6
Q ss_pred HHHHHHHhCCCh
Q 045523 174 VNSLCMVLGLDF 185 (634)
Q Consensus 174 I~~L~~eLg~df 185 (634)
++.|+..+|..|
T Consensus 182 L~~la~~l~~~f 193 (314)
T PF04111_consen 182 LQTLAKKLNFKF 193 (314)
T ss_dssp HHHHHHHCT---
T ss_pred HHHHHHHhCCCc
Confidence 567777788876
No 202
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.47 E-value=7.6e+02 Score=26.52 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRK 104 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K 104 (634)
.+|+.....|....+.|.+.+
T Consensus 63 s~LkREnq~l~e~c~~lek~r 83 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTR 83 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 344444444555555554443
No 203
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=21.42 E-value=8.9e+02 Score=28.06 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPK 128 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~ 128 (634)
..|+.++..+..+++++.++..+-.+.......+....|..+|-.
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~ 171 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIK 171 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 478999999999999999999999999999999999999999866
No 204
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.37 E-value=4.6e+02 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=9.3
Q ss_pred HHHHHHHhCCChhhhhhh
Q 045523 174 VNSLCMVLGLDFKDTVCK 191 (634)
Q Consensus 174 I~~L~~eLg~df~~~v~e 191 (634)
+....+.||+|-...|..
T Consensus 96 V~~aL~rLgvPs~~dv~~ 113 (132)
T PF05597_consen 96 VARALNRLGVPSRKDVEA 113 (132)
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 445555666665444433
No 205
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.36 E-value=1.1e+03 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 137 DEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSL 177 (634)
Q Consensus 137 d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L 177 (634)
+....|...+...+..+..++.+...-...+..+...+..+
T Consensus 189 ~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 189 EKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666555555555555444433
No 206
>PRK11820 hypothetical protein; Provisional
Probab=21.25 E-value=1e+03 Score=25.46 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 045523 137 DEADLSEQRLKELRSQLAYLQEEK 160 (634)
Q Consensus 137 d~~dLS~e~LeeLk~~L~~LqkEK 160 (634)
+..|+| +.+..|++|+..++...
T Consensus 211 dK~DI~-EEi~RL~sHl~~f~~~L 233 (288)
T PRK11820 211 QKADIA-EELDRLKSHLKEFREIL 233 (288)
T ss_pred HHcchH-HHHHHHHHHHHHHHHHH
Confidence 344555 45788888888777653
No 207
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.23 E-value=6e+02 Score=22.73 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=40.6
Q ss_pred HHhcCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Q 045523 313 LRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAR 373 (634)
Q Consensus 313 Wdk~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~ 373 (634)
+..++++.++-..++.... .+.....+..+.++.++..++++...-+.+++.++.+...|
T Consensus 53 lr~~G~sL~eI~~~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (113)
T cd01109 53 LRNTGMSIKDIKEYAELRR-EGDSTIPERLELLEEHREELEEQIAELQETLAYLDYKIDYY 112 (113)
T ss_pred HHHcCCCHHHHHHHHHHHc-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777666554321 22223467778888888888888888888888888775443
No 208
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=20.74 E-value=1e+03 Score=25.43 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 045523 137 DEADLSEQRLKELRSQLAYLQEEK 160 (634)
Q Consensus 137 d~~dLS~e~LeeLk~~L~~LqkEK 160 (634)
+..|+| +.|..|++|++.++...
T Consensus 214 dK~DI~-EEl~RL~sHl~~f~~~L 236 (291)
T TIGR00255 214 QRIDIA-EEIDRLDSHVKEFYNIL 236 (291)
T ss_pred HhcchH-HHHHHHHHHHHHHHHHH
Confidence 344555 45778888887776653
No 209
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.58 E-value=9.2e+02 Score=24.65 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045523 144 QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLD 184 (634)
Q Consensus 144 e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~d 184 (634)
..+.-|+.+|.+.+.|.+.|...+..++..+..+-..|...
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999887777443
No 210
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=20.50 E-value=34 Score=39.30 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhh
Q 045523 344 QIDLQIAKAKEEASSRKEILEKVEKWFTAREEE 376 (634)
Q Consensus 344 ~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eEe 376 (634)
.+|.||..||+.+..-.-=|+-+|...-..++.
T Consensus 373 ~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqq 405 (495)
T PF12004_consen 373 KYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQ 405 (495)
T ss_dssp ---------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 488899999998887777788888776666554
No 211
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.34 E-value=6.4e+02 Score=22.69 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKLQHLATSLVE 240 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~e 240 (634)
+.++.+...+..|+.....-..++.++...|.+
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444445555554443
No 212
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.24 E-value=6.7e+02 Score=22.89 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHhcCCChhhhhhhhhHhhhcCCCC---HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhh
Q 045523 313 LRKMHTVTETVGDFSIEAIESGSMD---FMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREEE 376 (634)
Q Consensus 313 Wdk~~~s~eer~~F~~~~idsg~~D---~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eEe 376 (634)
+..++|+.++-..|+.... .+... ..+.++.++.++..+.+....-+.+++.++.....|+|.
T Consensus 51 lr~~G~~L~~I~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~ 116 (118)
T cd04776 51 GKRLGFSLEEIRELLDLYD-PPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRER 116 (118)
T ss_pred HHHCCCCHHHHHHHHHhhc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777766654332 12111 246777888899999888888888888888887777663
Done!