Query 045523
Match_columns 634
No_of_seqs 250 out of 480
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 99.5 6.2E-14 2.1E-18 129.1 8.5 75 350-428 3-130 (130)
2 1i84_S Smooth muscle myosin he 85.2 5.2 0.00018 48.7 13.0 73 41-125 871-943 (1184)
3 3ghg_A Fibrinogen alpha chain; 77.2 5.2 0.00018 44.1 8.0 130 84-220 53-188 (562)
4 3s84_A Apolipoprotein A-IV; fo 75.5 68 0.0023 32.4 15.5 220 37-317 4-226 (273)
5 2j1d_G DAAM1, disheveled-assoc 70.6 27 0.00093 38.2 11.9 30 340-369 335-364 (483)
6 3na7_A HP0958; flagellar bioge 67.2 1E+02 0.0035 30.5 25.1 111 39-180 16-126 (256)
7 3ol1_A Vimentin; structural ge 66.3 54 0.0018 29.1 10.8 95 9-118 21-117 (119)
8 1l8d_A DNA double-strand break 55.9 71 0.0024 27.3 9.6 88 87-180 9-100 (112)
9 3o0z_A RHO-associated protein 55.9 90 0.0031 29.5 10.7 74 84-164 65-138 (168)
10 1nfn_A Apolipoprotein E3; lipi 53.1 57 0.002 31.2 9.3 70 38-114 89-158 (191)
11 1deq_A Fibrinogen (alpha chain 52.7 55 0.0019 34.8 9.6 80 84-167 56-136 (390)
12 1l8d_A DNA double-strand break 51.8 86 0.0029 26.8 9.5 89 37-125 13-101 (112)
13 1use_A VAsp, vasodilator-stimu 51.1 37 0.0013 25.3 5.7 36 273-310 2-40 (45)
14 2lw1_A ABC transporter ATP-bin 49.9 31 0.0011 28.9 6.0 64 48-115 22-86 (89)
15 1go4_E MAD1 (mitotic arrest de 44.0 1.1E+02 0.0036 26.6 8.5 74 86-161 10-85 (100)
16 1deq_A Fibrinogen (alpha chain 42.2 79 0.0027 33.6 8.8 56 208-263 113-171 (390)
17 2qyw_A Vesicle transport throu 42.1 1.6E+02 0.0056 25.1 10.0 54 49-102 46-99 (102)
18 3na7_A HP0958; flagellar bioge 41.6 2.7E+02 0.0091 27.4 18.0 113 39-175 51-163 (256)
19 1yke_B RNA polymerase II holoe 39.4 2.3E+02 0.0079 26.1 10.8 39 207-245 91-129 (151)
20 3vkg_A Dynein heavy chain, cyt 38.9 1.4E+02 0.0048 40.3 12.3 97 84-180 2010-2106(3245)
21 3ghg_A Fibrinogen alpha chain; 38.4 1E+02 0.0034 34.2 9.1 35 277-312 116-150 (562)
22 2v71_A Nuclear distribution pr 38.3 2.8E+02 0.0094 26.7 18.4 80 84-173 6-85 (189)
23 1v9d_A Diaphanous protein homo 38.2 2.4E+02 0.0082 29.0 12.0 19 277-295 251-269 (340)
24 3onj_A T-snare VTI1; helix, HA 37.1 1.9E+02 0.0065 24.4 9.1 14 19-32 27-40 (97)
25 1zke_A Hypothetical protein HP 37.1 1.3E+02 0.0043 24.9 7.3 62 287-358 4-70 (83)
26 4dci_A Uncharacterized protein 36.8 2.6E+02 0.0088 25.9 10.6 71 48-121 36-106 (150)
27 2dfs_A Myosin-5A; myosin-V, in 36.5 3.6E+02 0.012 32.4 14.6 17 279-295 1024-1040(1080)
28 3oja_B Anopheles plasmodium-re 35.9 4.5E+02 0.015 28.4 15.5 126 144-301 456-581 (597)
29 3vkg_A Dynein heavy chain, cyt 34.4 2.4E+02 0.0081 38.2 13.3 94 140-241 2010-2103(3245)
30 2xs1_A Programmed cell death 6 34.2 5.6E+02 0.019 29.0 29.8 133 37-172 437-581 (704)
31 1go4_E MAD1 (mitotic arrest de 32.4 1.2E+02 0.0041 26.3 7.0 43 141-185 9-51 (100)
32 2dfs_A Myosin-5A; myosin-V, in 32.2 3.4E+02 0.012 32.7 13.4 6 217-222 1025-1030(1080)
33 1quu_A Human skeletal muscle a 31.0 3.6E+02 0.012 25.8 16.2 63 104-172 181-243 (250)
34 1q08_A Zn(II)-responsive regul 30.6 1.9E+02 0.0064 23.8 8.0 68 307-375 6-74 (99)
35 3lay_A Zinc resistance-associa 30.1 3.5E+02 0.012 25.5 11.4 63 203-293 66-128 (175)
36 3oja_A Leucine-rich immune mol 29.5 3.4E+02 0.012 28.8 11.8 104 4-126 384-487 (487)
37 1sjj_A Actinin; 3-helix bundle 28.8 7E+02 0.024 28.4 26.2 322 33-381 283-624 (863)
38 2lw9_A Unconventionnal myosin- 28.6 86 0.003 23.7 4.6 38 277-314 5-42 (51)
39 2yy0_A C-MYC-binding protein; 28.3 1E+02 0.0035 23.5 5.3 31 96-126 20-50 (53)
40 1yf2_A Type I restriction-modi 27.9 56 0.0019 33.4 5.0 42 248-303 377-418 (425)
41 3r2p_A Apolipoprotein A-I; amp 27.9 1.6E+02 0.0054 27.7 7.8 30 44-73 78-107 (185)
42 1quu_A Human skeletal muscle a 27.4 4.1E+02 0.014 25.3 18.4 136 84-235 90-242 (250)
43 3ol1_A Vimentin; structural ge 24.7 3.5E+02 0.012 23.6 10.1 33 36-68 22-54 (119)
44 1hs7_A Syntaxin VAM3; UP-and-D 24.3 3.4E+02 0.011 23.3 8.3 49 51-105 9-58 (97)
45 2zqm_A Prefoldin beta subunit 24.1 3.3E+02 0.011 23.0 11.4 39 207-245 69-107 (117)
46 2xs1_A Programmed cell death 6 24.1 8.2E+02 0.028 27.7 34.1 192 35-236 372-581 (704)
47 1gs9_A Apolipoprotein E, APOE4 23.9 4.4E+02 0.015 24.4 10.2 63 44-113 95-157 (165)
48 3obv_E Protein diaphanous homo 23.6 6.9E+02 0.024 26.8 12.9 18 277-294 322-339 (457)
49 3ra3_B P2F; coiled coil domain 23.3 91 0.0031 20.3 3.4 21 47-67 6-26 (28)
50 1fgl_B HIV-1 GAG protein; cycl 23.1 24 0.00081 23.4 0.6 8 500-507 19-26 (26)
51 1ydx_A Type I restriction enzy 23.1 74 0.0025 32.8 4.9 42 248-303 353-394 (406)
52 2avr_X Adhesion A; antiparalle 23.0 4E+02 0.014 23.7 9.9 94 277-371 8-106 (119)
53 3mq9_A Bone marrow stromal ant 22.5 5.1E+02 0.017 27.2 11.5 45 25-69 372-418 (471)
54 1m1j_A Fibrinogen alpha subuni 21.9 7.2E+02 0.025 27.1 12.0 23 84-106 54-76 (491)
55 3lay_A Zinc resistance-associa 21.9 5E+02 0.017 24.4 11.2 64 139-224 66-129 (175)
56 3l9f_A Putative uncharacterize 21.4 3.8E+02 0.013 25.6 9.2 65 301-365 105-169 (204)
57 2yy0_A C-MYC-binding protein; 20.9 1.6E+02 0.0053 22.5 5.0 31 43-73 21-51 (53)
58 1vcs_A Vesicle transport throu 20.4 3.6E+02 0.012 22.9 7.9 54 50-103 36-89 (102)
59 2yko_A LINE-1 ORF1P; RNA-bindi 20.1 1.6E+02 0.0054 29.3 6.2 39 207-245 12-50 (233)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=99.48 E-value=6.2e-14 Score=129.05 Aligned_cols=75 Identities=27% Similarity=0.352 Sum_probs=66.3
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhHHHHhhc---------------------------------------------
Q 045523 350 AKAKEEASSRKEILEKVEKWFTAREEESWLEEYNR--------------------------------------------- 384 (634)
Q Consensus 350 ~rLKe~~~srK~Ile~Vekw~sl~eEe~wLeEynr--------------------------------------------- 384 (634)
++|+++|++||+||++|++|..+|.+...|++|++
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~~Rgg~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~e~g 82 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHS 82 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999999766666666999953
Q ss_pred -------hhHHhhH-HHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccC
Q 045523 385 -------VRLISML-EDYSCMRQEKELERQRQKDHRKLQVQLIAEQEAIYGS 428 (634)
Q Consensus 385 -------~rLl~~l-ee~~~~r~eKEeEK~r~R~~Kk~q~ql~~e~e~~~Gs 428 (634)
+++++++ ++|+.||++||+||+| |++||. +++|+||+|||
T Consensus 83 ~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs 130 (130)
T 3nrx_A 83 KAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS 130 (130)
T ss_dssp SCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred CeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence 6799988 5599999999999999 999998 35999999998
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.22 E-value=5.2 Score=48.67 Aligned_cols=73 Identities=7% Similarity=0.009 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 41 RKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQI 120 (634)
Q Consensus 41 ~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~ 120 (634)
..+...+.....+...+..++.++..+-..|.. ..+.+..+...++.+..++.+-..++.++..++..
T Consensus 871 ~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~------------e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA------------ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555544432 23344555555666665555555566666666555
Q ss_pred HHHHh
Q 045523 121 ISNEI 125 (634)
Q Consensus 121 Lc~eL 125 (634)
+-..+
T Consensus 939 ~ee~l 943 (1184)
T 1i84_S 939 EEERS 943 (1184)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 55444
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.20 E-value=5.2 Score=44.09 Aligned_cols=130 Identities=12% Similarity=0.183 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHH-HHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLK-ELRSQLAYLQEEKSS 162 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~Le-eLk~~L~~LqkEKs~ 162 (634)
++|.++...+...|++|+.+.++-.+-.++...-...+.+.|..... . ..+.+-..-++. +|+.+++.|+.+.+.
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~---q-~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFS---S-ANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHH---H-HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---h-hhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999999988888888888999988876521 0 111122333333 888999999998888
Q ss_pred HHHHHHHHHHHHHHHHHH---hCCChhh--hhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045523 163 RLRKVMKHLSNVNSLCMV---LGLDFKD--TVCKIHPTLNDPKASKDVSNDTIEKMATTIQSL 220 (634)
Q Consensus 163 Rl~kv~el~~~I~~L~~e---Lg~df~~--~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~L 220 (634)
-+..+..|...|.++..+ |+.|..- -.|.- |- .-.-.+-+.....+.+++.+.++
T Consensus 129 QlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg-sC--sr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 129 KVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG-SC--SRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-TB--SCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc--cchheeecchHHHHHHHHHHHHH
Confidence 888887777777777555 5555421 12320 10 00114556666666666665554
No 4
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=75.54 E-value=68 Score=32.44 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKN-QFLQVL 115 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~-ef~el~ 115 (634)
++..+...+....|.+|...+.+++..|.-...++.. -+.+.+..++.+|+-+..+-...+. .+.+++
T Consensus 4 e~~~~l~~~~e~lr~~l~~~~eel~~~L~P~~~~l~~-----------~l~~~le~lr~~L~Py~~el~~~~~~~~eelr 72 (273)
T 3s84_A 4 ELHERLAKDSEKLKEEIGKELEELRARLLPHANEVSQ-----------KIGDNLRELQQRLEPYADQLRTQVNTQAEQLR 72 (273)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHGGGHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHHHHHHhcCCcHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCChhhhhhhccC
Q 045523 116 NQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRK-VMKHLSNVNSLCMVLGLDFKDTVCKIHP 194 (634)
Q Consensus 116 ~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~k-v~el~~~I~~L~~eLg~df~~~v~evhp 194 (634)
.++.-+..+|-.. =...+++|+..|.-+-.+...|+.. +.+++..+.-+..++..-....+.+++
T Consensus 73 ~kL~p~~~el~~~-------------l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr- 138 (273)
T 3s84_A 73 RQLTPYAQRMERV-------------LRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELR- 138 (273)
T ss_dssp HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHH-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCC
Q 045523 195 TLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKL-QHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPN 273 (634)
Q Consensus 195 sl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl-~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~ 273 (634)
..-.++..+.-++|...+..|...-......+ ..+...+.+|..+|
T Consensus 139 -----~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr~~L---------------------------- 185 (273)
T 3s84_A 139 -----RSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRL---------------------------- 185 (273)
T ss_dssp -----HHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred -----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 045523 274 FLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMH 317 (634)
Q Consensus 274 ~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~ 317 (634)
.-..+.+..-+..--+-=...+.++-...+..++++...++
T Consensus 186 ---~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~ 226 (273)
T 3s84_A 186 ---APLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVE 226 (273)
T ss_dssp ---HHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
No 5
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=70.63 E-value=27 Score=38.17 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 045523 340 DLLEQIDLQIAKAKEEASSRKEILEKVEKW 369 (634)
Q Consensus 340 eLL~~~E~EI~rLKe~~~srK~Ile~Vekw 369 (634)
+.+...+.++..|+..+..-...|..+-.|
T Consensus 335 ~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~y 364 (483)
T 2j1d_G 335 QFITVASFSFSDVEDLLAEAKDLFTKAVKH 364 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=67.23 E-value=1e+02 Score=30.51 Aligned_cols=111 Identities=8% Similarity=0.087 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 39 YGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQL 118 (634)
Q Consensus 39 yr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI 118 (634)
++..+++....+..+-..|++++.++..+ ...+..+...++++.......-.++.++...|
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l-------------------~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAK-------------------NKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666554 34566788888888888888888888899999
Q ss_pred HHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 119 QIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMV 180 (634)
Q Consensus 119 ~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~e 180 (634)
.+.-..|... =+.+.+..|...++.++.+.......+.++...+..+-..
T Consensus 77 ~~~~~~l~~v------------~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 77 ASIQKKMSEI------------KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHC------------SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888432 1456788888888888888888888888887777665444
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.26 E-value=54 Score=29.05 Aligned_cols=95 Identities=11% Similarity=0.206 Sum_probs=46.0
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCH
Q 045523 9 PNSKIWDEVGESDNERDKMILEIE--QECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNL 86 (634)
Q Consensus 9 eLq~IWdEIG~~e~eRd~ml~~lE--qecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL 86 (634)
++..++..|.....++.++..++. +...+-|+.+.+.+...|..+-..|..+++.+....-. ..-|
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~------------r~dL 88 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA------------RLDL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH------------HHHH
Confidence 344444444333334444444443 23345567777766666665555555555554332110 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 87 RDKLKTITPLLEDMRQRKIDRKNQFLQVLNQL 118 (634)
Q Consensus 87 ~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI 118 (634)
..++..+...|.-|++-.++ ++.+++.+|
T Consensus 89 E~~iesL~eEl~FLKk~hee---El~eLq~qi 117 (119)
T 3ol1_A 89 ERKVESLQEEIAFLKKLHEE---EIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 34455666666666555443 444444443
No 8
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.93 E-value=71 Score=27.33 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCH----HHHHHHHHHHHHHHHHHHH
Q 045523 87 RDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSE----QRLKELRSQLAYLQEEKSS 162 (634)
Q Consensus 87 ~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~----e~LeeLk~~L~~LqkEKs~ 162 (634)
.+.+..+...+..|+..+.+-..++..+...+..+-.. +..+|+ .+..++. ..++.+...+..++.+...
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~--g~~CPv----Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~ 82 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA--KGKCPV----CGRELTDEHREELLSKYHLDLNNSKNTLAK 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SEECTT----TCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCC----CCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555554444444444444333110 222232 3344443 3455566666666555544
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045523 163 RLRKVMKHLSNVNSLCMV 180 (634)
Q Consensus 163 Rl~kv~el~~~I~~L~~e 180 (634)
=...+..+...+..|-..
T Consensus 83 l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 83 LIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.87 E-value=90 Score=29.54 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSR 163 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~R 163 (634)
..|-+.+..+..+|+.=+.-...+-.-+.+++.+|..|+.+|...-.... =.......|+..+..|++|++..
T Consensus 65 ~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~-------k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE-------KVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 57777889999999998888888888899999999999998865411000 01344567778888888888776
Q ss_pred H
Q 045523 164 L 164 (634)
Q Consensus 164 l 164 (634)
.
T Consensus 138 e 138 (168)
T 3o0z_A 138 E 138 (168)
T ss_dssp H
T ss_pred h
Confidence 5
No 10
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=53.11 E-value=57 Score=31.21 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 38 VYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQV 114 (634)
Q Consensus 38 vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el 114 (634)
+..+...+....|.++.+.+++++..|.-...+|...- ...+.+.-..+.|..++|+.+-.+++.+|...
T Consensus 89 ~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l-------~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~ 158 (191)
T 1nfn_A 89 TRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAML-------GQSTEELRVRLASHLRKLRKRLLRDADDLQKR 158 (191)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444556667888999999999999998888887542 22344455688899999999988888876654
No 11
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.75 E-value=55 Score=34.76 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLS-EQRLKELRSQLAYLQEEKSS 162 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS-~e~LeeLk~~L~~LqkEKs~ 162 (634)
++|.++...+..+++.|+....+-.+-..+.-.-+..+.+.|..... . ..+.+-. .+-.++|+.++..|+.....
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~---q-~~dndn~~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA---K-ANNNDNTFKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---h-hccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888999999888877777777777777777777766521 1 2222222 34455666666666665544
Q ss_pred HHHHH
Q 045523 163 RLRKV 167 (634)
Q Consensus 163 Rl~kv 167 (634)
-+..+
T Consensus 132 q~~~i 136 (390)
T 1deq_A 132 QVQRI 136 (390)
T ss_pred HhHHH
Confidence 44433
No 12
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.84 E-value=86 Score=26.79 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLN 116 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~ 116 (634)
+-|+..+.+....+..+...|..+...+..+-..-|.-|+-..+-...........+..++..++.+..+-..++..+..
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777776663321122322111010011223445555555555554444445555555
Q ss_pred HHHHHHHHh
Q 045523 117 QLQIISNEI 125 (634)
Q Consensus 117 qI~~Lc~eL 125 (634)
++..+-..+
T Consensus 93 ~~~~l~~~~ 101 (112)
T 1l8d_A 93 ELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
No 13
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=51.14 E-value=37 Score=25.29 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=20.0
Q ss_pred CcCcHHHHHHHHHHHHHHHHHHHH--hHH-HHHHHHHHHHH
Q 045523 273 NFLSMNNIKYVEGEVSRLEQLKSS--KMK-ELVLKKKLELA 310 (634)
Q Consensus 273 ~~LS~~tI~~le~EVeRLeeLK~~--~mk-eLI~k~R~ELe 310 (634)
++.+...++.+..|+ |++++++ +|| ++|+..|+||.
T Consensus 2 ~~~~~~dle~~KqEI--L~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 2 SSSDYSDLQRVKQEL--LEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp -CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665 3444443 333 67777777764
No 14
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.95 E-value=31 Score=28.91 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 48 ISRAQLLRAIALSEAEVADICSTLGEQPGHCDW-TAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVL 115 (634)
Q Consensus 48 ~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~-~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~ 115 (634)
+.-+.|-..|+.++.++..|-..|+.|.|+..+ .....|..++..+...|+.+ .+|+.++.+++
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~----~erWeeLe~~~ 86 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA----FERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhH
Confidence 344678889999999999999999998765321 11223444455555554443 45665555443
No 15
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.97 E-value=1.1e+02 Score=26.63 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--ccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045523 86 LRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMY--KIIEDEADLSEQRLKELRSQLAYLQEEKS 161 (634)
Q Consensus 86 L~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~--~~~~d~~dLS~e~LeeLk~~L~~LqkEKs 161 (634)
-.+++..++..++.|+.+...-.++...+..++...| |-|.+.+. .+.--...|...-....+..++.|+.|..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999988888888998888775 65654311 11111335555666677788888888754
No 16
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.22 E-value=79 Score=33.60 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHhhhcccc
Q 045523 208 DTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWN---LMDTPLEEQEMFHNITSKIA 263 (634)
Q Consensus 208 ~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~---~L~ip~eEr~~F~~~~~~i~ 263 (634)
...+.|...+.-|++.-...+..+..|+..|..+=. +|+++.+....-..+.|.+.
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~ 171 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRA 171 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 334444444444444444444343334333333322 45555555544444555443
No 17
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=42.12 E-value=1.6e+02 Score=25.13 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 045523 49 SRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQ 102 (634)
Q Consensus 49 ~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk 102 (634)
.|...+..|.....|...|...+....-..++.....+..++..|+..|+.|++
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555444321111000112444555566666555543
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.59 E-value=2.7e+02 Score=27.42 Aligned_cols=113 Identities=11% Similarity=0.117 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 39 YGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQL 118 (634)
Q Consensus 39 yr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI 118 (634)
....+++......++-..|+++.+.+...-..|+.-. + ...+.++...++.+.++....-.++.++..++
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---------~-~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---------S-ERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---------S-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666664311 1 12477888888888888888888888888888
Q ss_pred HHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 119 QIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVN 175 (634)
Q Consensus 119 ~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~ 175 (634)
+.+-..+... ...+..++..+..++.+....+..+..-...+.
T Consensus 121 e~~~~~l~~~--------------~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 121 KRKSEKQEDL--------------KKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777666433 245667777777777776666665554444443
No 19
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.44 E-value=2.3e+02 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM 245 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L 245 (634)
...|.+|.........++.+-.++.+.+...|..+-...
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888887665443
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.95 E-value=1.4e+02 Score=40.29 Aligned_cols=97 Identities=9% Similarity=0.140 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSR 163 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~R 163 (634)
.|+++.++.+...++..+.+..+-..++.++.++++.|-+++......-....++.+....+|+.=...+..|-.|+.+=
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 79999999999999999888888888888888888888776643310000001223455678888888888888888876
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045523 164 LRKVMKHLSNVNSLCMV 180 (634)
Q Consensus 164 l~kv~el~~~I~~L~~e 180 (634)
.+.+..+..++..|...
T Consensus 2090 ~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH
Confidence 67777777766666544
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.38 E-value=1e+02 Score=34.16 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045523 277 MNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEI 312 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeL 312 (634)
...|..++.+|+.-- -..+.|+..|.+.+.+|..|
T Consensus 116 RRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345666666666544 22344555566666665544
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=38.30 E-value=2.8e+02 Score=26.65 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSR 163 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~R 163 (634)
.+..+.+..++..++.+..+..+-..+|.+.+..=..|-++|.... .-+..++..|+..+..|..|...=
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL----------~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQL----------VQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888999999999998888888888888887777777775441 113455666666666666665555
Q ss_pred HHHHHHHHHH
Q 045523 164 LRKVMKHLSN 173 (634)
Q Consensus 164 l~kv~el~~~ 173 (634)
..++.....+
T Consensus 76 k~K~~~~~~e 85 (189)
T 2v71_A 76 KEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 23
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=38.22 E-value=2.4e+02 Score=28.97 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045523 277 MNNIKYVEGEVSRLEQLKS 295 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~ 295 (634)
..++...+.++..|+.+..
T Consensus 251 ~~Fl~~a~~~~~~l~~~~~ 269 (340)
T 1v9d_A 251 TSFVKDAQEQYNKLRMMHS 269 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777776665543
No 24
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=37.09 E-value=1.9e+02 Score=24.44 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHH
Q 045523 19 ESDNERDKMILEIE 32 (634)
Q Consensus 19 ~~e~eRd~ml~~lE 32 (634)
.+.++|...+.+++
T Consensus 27 ~~ge~Rk~~i~~ie 40 (97)
T 3onj_A 27 QPLSQRNTTLKHVE 40 (97)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHH
Confidence 45566666666665
No 25
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=37.08 E-value=1.3e+02 Score=24.92 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCH-----HHHHHHHHHHHHHHHHHHHh
Q 045523 287 VSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDF-----MDLLEQIDLQIAKAKEEASS 358 (634)
Q Consensus 287 VeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~-----EeLL~~~E~EI~rLKe~~~s 358 (634)
.+|+..+-+. |+..|.||+-+-+..++|-..- -.|-.|+.|- ...|++++.||.+||+...+
T Consensus 4 FErid~ilk~-----IE~~q~eI~~lL~~AkiSl~Dy-----ImiKRGS~DmPe~L~~~~~~QideeV~~LKe~Ida 70 (83)
T 1zke_A 4 FEKIRKILAD-----IEDSQNEIEMLLKLANLSLGDF-----IEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 70 (83)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHTCCHHHH-----HHHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhHHH-----hheeccCccCccccCHHHHHHHHHHHHHHHHHHHH
No 26
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=36.83 E-value=2.6e+02 Score=25.88 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 48 ISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQII 121 (634)
Q Consensus 48 ~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~L 121 (634)
....++-.+++.++-+...+..++.-....+ .+....+++..++.+++.=+.+..++.+++..-..+++.|
T Consensus 36 ~~i~q~d~elqQLefq~kr~~~e~~~q~~~~---~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 36 NGIANADQQLAQLEQEGQTVVDQVRRQSANP---LDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666677777777777776666322111 1235566778888887775555555555555444444443
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.55 E-value=3.6e+02 Score=32.42 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045523 279 NIKYVEGEVSRLEQLKS 295 (634)
Q Consensus 279 tI~~le~EVeRLeeLK~ 295 (634)
.+..++.|...|++...
T Consensus 1024 kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555554444433
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.91 E-value=4.5e+02 Score=28.43 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 045523 144 QRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEV 223 (634)
Q Consensus 144 e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~Leee 223 (634)
+.+.+++..+..|+.+...-.+.+......|......+.+...+.... .+.+.+....+.+..+.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~~ 520 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS---------------SDNLNKVFTHLKERQAF 520 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH---------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH---------------HHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045523 224 KIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKEL 301 (634)
Q Consensus 224 K~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeL 301 (634)
+....+..+.-..+....-+.+.-..++.+...... .+.+..+..|...+.+-.++.+.++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~-----------------~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNK-----------------RAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh-----------------hhHHHHHHHHHHHHHHHHHHHHHHh
No 29
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.43 E-value=2.4e+02 Score=38.21 Aligned_cols=94 Identities=6% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 045523 140 DLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQS 219 (634)
Q Consensus 140 dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~ 219 (634)
.|-.++|.++...+...+.+...-..++.++...|..|-.... ..+.+.. .+ ..........|++-..++..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~----~~~~ek~-~L---~~e~~~~~~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA----TLIRETE-QI---KTESSKVKNKVDRSIALLDN 2081 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HH---HHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666665555444445554444444444332 1111100 00 00011224667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045523 220 LQEVKIQRMQKLQHLATSLVEL 241 (634)
Q Consensus 220 LeeeK~~R~~kl~~L~~~L~eL 241 (634)
|..||..=.+.++.+..++..|
T Consensus 2082 L~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2082 LNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHhc
Confidence 7777765555555555544443
No 30
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=34.22 E-value=5.6e+02 Score=29.03 Aligned_cols=133 Identities=14% Similarity=0.033 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSE-------AEVADICSTLGEQPGHCDWT--AGGNLRDKLKTITPLLEDMRQRKIDR 107 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~-------~EL~~L~~eLge~~~~~~~~--~~~tL~eqL~~l~~~LEeLrk~K~eR 107 (634)
+-+.+.+++....+.+....+.++. .+...+....|.. ....+. -..+|.+.+..|+..|+....--..-
T Consensus 437 ~~l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~-w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v 515 (704)
T 2xs1_A 437 QTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKER-WQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQV 515 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444555555544444443333333 3445666677753 111111 12356777777777777776554444
Q ss_pred HHHHHHHHHHHHHHHH---HhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 108 KNQFLQVLNQLQIISN---EICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLS 172 (634)
Q Consensus 108 ~~ef~el~~qI~~Lc~---eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~ 172 (634)
...|......|+-||. +|... .|...... .......+..|+..+..+..-+.+|.....+++.
T Consensus 516 ~~~~~~~~~~l~~L~~~~~~l~~~-~p~~~~~~-~~~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~ 581 (704)
T 2xs1_A 516 KECYQSHRDTIVLLCKPEPELNAA-IPSANPAK-TMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581 (704)
T ss_dssp HHHHHTTHHHHHHHTSCHHHHHHT-SCCCCCCG-GGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhh-CccCCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666555555541 11111 01100000 0112356778888888888888888876666643
No 31
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.41 E-value=1.2e+02 Score=26.28 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 045523 141 LSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDF 185 (634)
Q Consensus 141 LS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df 185 (634)
+|-+.+..++..|+.|+.|...=.+....+--.|...+ |.-||
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~ 51 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDY 51 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccc
Confidence 48899999999999999997766666666655554443 54455
No 32
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.19 E-value=3.4e+02 Score=32.66 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.1
Q ss_pred HHHHHH
Q 045523 217 IQSLQE 222 (634)
Q Consensus 217 l~~Lee 222 (634)
+..|++
T Consensus 1025 v~~L~~ 1030 (1080)
T 2dfs_A 1025 VSELKE 1030 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 33
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=31.04 E-value=3.6e+02 Score=25.78 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 104 KIDRKNQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLS 172 (634)
Q Consensus 104 K~eR~~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~ 172 (634)
...+...+..+..+++.|....+.... .+ ..-+...+..+...-..|..--..|...+.....
T Consensus 181 ~~~~~~~i~~l~~~~~~l~~~~~~~~~-----~~-~~~~~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~ 243 (250)
T 1quu_A 181 ADGERQSIMAIQNEVEKVIQSYNIRIS-----SS-NPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELA 243 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSC-----CS-CTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccC-----CC-CCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777777777766553210 00 1112234556666666666666666666655443
No 34
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=30.63 E-value=1.9e+02 Score=23.77 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCChhhhhhhhhHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhh
Q 045523 307 LELAEILRKMHTVTETVGDFSIEAIESGSM-DFMDLLEQIDLQIAKAKEEASSRKEILEKVEKWFTAREE 375 (634)
Q Consensus 307 ~ELeeLWdk~~~s~eer~~F~~~~idsg~~-D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw~sl~eE 375 (634)
..+-...+.++||-++-..|+....+ +.. ...++.+.++.++..+.+....-+.+.+.++.....|+.
T Consensus 6 L~~I~~lr~lGfsL~eIk~~l~~~~~-~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 6 LKFIRHARQLGFSLESIRELLSIRID-PEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHC-GGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445678889999998888764422 211 346788888888888888888888888888877665544
No 35
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.14 E-value=3.5e+02 Score=25.45 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccCCcccccCCCcCcHHHHHH
Q 045523 203 KDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKY 282 (634)
Q Consensus 203 ~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~ 282 (634)
.+||++--+++++..++....-....+++...+.+|..|+.- ..++...|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a----------------------------~~~DeakI~a 117 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA----------------------------SSPDTAKINA 117 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------------------------SSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------CCCCHHHHHH
Confidence 689999999999999888777666666666666666655432 1233677888
Q ss_pred HHHHHHHHHHH
Q 045523 283 VEGEVSRLEQL 293 (634)
Q Consensus 283 le~EVeRLeeL 293 (634)
+..|+..|..-
T Consensus 118 L~~Ei~~Lr~q 128 (175)
T 3lay_A 118 VAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777543
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.46 E-value=3.4e+02 Score=28.77 Aligned_cols=104 Identities=5% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 045523 4 PIKFRPNSKIWDEVGESDNERDKMILEIEQECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAG 83 (634)
Q Consensus 4 ~~lL~eLq~IWdEIG~~e~eRd~ml~~lEqecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~ 83 (634)
...-.+++..|..+-.-....+..-........+-|..+..+.+..|.+..+..+..+.++..|
T Consensus 384 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 447 (487)
T 3oja_A 384 AELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL---------------- 447 (487)
T ss_dssp HHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred hhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQLQIISNEIC 126 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~ 126 (634)
+++-+.+++.++++.+.-.+-.+.+.++..+-+.+++.||
T Consensus 448 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 448 ---AEENARLKKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
No 37
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=28.76 E-value=7e+02 Score=28.43 Aligned_cols=322 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCCCCC-CCCCHHHHHHHHHHH---HHHHHHHHH
Q 045523 33 QECLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTL---GEQPGHCDWT-AGGNLRDKLKTITPL---LEDMRQRKI 105 (634)
Q Consensus 33 qecl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eL---ge~~~~~~~~-~~~tL~eqL~~l~~~---LEeLrk~K~ 105 (634)
..+...+....+-....+....+.....+.-+..|...+ +.+++..... ....|.+..+.|... .+.+.....
T Consensus 283 ~~v~~~l~~~~~~~~~~k~~~~~e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L~~~~~~r~~~l~~~~ 362 (863)
T 1sjj_A 283 QAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEI 362 (863)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC--CCccccCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 106 DRKNQFLQVLNQLQIISNEICPKDN--MYKIIEDEADL-SEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLG 182 (634)
Q Consensus 106 eR~~ef~el~~qI~~Lc~eL~~~~~--~~~~~~d~~dL-S~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg 182 (634)
+|.+.+..+..+...-|+++..-.. .-....++... +...+..+....+.++.+...+...|..+......|. ..+
T Consensus 363 ~R~~~Le~l~~~F~~~~~~~~~Wl~~~e~~l~~~~~g~~dl~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~-~~~ 441 (863)
T 1sjj_A 363 RRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELN-ELD 441 (863)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC
Q ss_pred CChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccc
Q 045523 183 LDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLMDTPLEEQEMFHNITSKI 262 (634)
Q Consensus 183 ~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L~ip~eEr~~F~~~~~~i 262 (634)
..-...| ...++.|...-+.|.+.-..|..++++.......+-.++ ..|......+
T Consensus 442 ~~~~~~I-----------------~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~-------~~f~~~a~~~ 497 (863)
T 1sjj_A 442 YYDSPSV-----------------NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLY-------LEYAKRAAPF 497 (863)
T ss_dssp CTTHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTTT
T ss_pred cccHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q ss_pred cC---------CcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhhc
Q 045523 263 AA---------LEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILRKMHTVTETVGDFSIEAIES 333 (634)
Q Consensus 263 ~~---------S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWdk~~~s~eer~~F~~~~ids 333 (634)
.. +..++...-.=....+..++.=...|...... -.-+.....+|..+....+.........+..-.+.
T Consensus 498 ~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~~l~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 575 (863)
T 1sjj_A 498 NNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKE--RQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQE 575 (863)
T ss_dssp HHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHTTHHHHHHH--HHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHH
T ss_pred HHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHH
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-HHHhhhhhHHHH
Q 045523 334 GSMDFMDLLEQIDLQIAKAKEEASSRKEILEKVEKW-FTAREEESWLEE 381 (634)
Q Consensus 334 g~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~Vekw-~sl~eEe~wLeE 381 (634)
-..-.++|++..+..-.+|.+.....+..-.+...| ..+.+...|+.+
T Consensus 576 L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e 624 (863)
T 1sjj_A 576 INGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQT 624 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
No 38
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=28.64 E-value=86 Score=23.70 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045523 277 MNNIKYVEGEVSRLEQLKSSKMKELVLKKKLELAEILR 314 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~~~mkeLI~k~R~ELeeLWd 314 (634)
.+-|-.++.|+++|+..|...+-.|-+..+.+|..+-|
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD 42 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRD 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 34677899999999999999999998888888877665
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.33 E-value=1e+02 Score=23.51 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045523 96 LLEDMRQRKIDRKNQFLQVLNQLQIISNEIC 126 (634)
Q Consensus 96 ~LEeLrk~K~eR~~ef~el~~qI~~Lc~eL~ 126 (634)
.+|.|+.+..+-..++..+..+++.+|+.|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555666677777777777764
No 40
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=27.92 E-value=56 Score=33.43 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=34.7
Q ss_pred CHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045523 248 PLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVL 303 (634)
Q Consensus 248 p~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~ 303 (634)
|.+||+.|......+ ...|+.++.+++.|+++|...|.+++.
T Consensus 377 pl~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~~ 418 (425)
T 1yf2_A 377 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLLT 418 (425)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 578999998776543 568899999999999999999988763
No 41
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=27.89 E-value=1.6e+02 Score=27.66 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 44 DDAKISRAQLLRAIALSEAEVADICSTLGE 73 (634)
Q Consensus 44 de~~~~K~~L~qsIa~~~~EL~~L~~eLge 73 (634)
......|.+|.+.+++++..+.-...++..
T Consensus 78 ~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~ 107 (185)
T 3r2p_A 78 KETEGLRQEMSKDLEEVKAKVQPYLDDFQK 107 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334467788888888888888777776654
No 42
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=27.41 E-value=4.1e+02 Score=25.33 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----------HHhCCCCCCCccccCCCCCCHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKIDRKNQFLQVLNQL---QIIS-----------NEICPKDNMYKIIEDEADLSEQRLKEL 149 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~eR~~ef~el~~qI---~~Lc-----------~eL~~~~~~~~~~~d~~dLS~e~LeeL 149 (634)
..+.++...|..+-+.|...-..|...+.+..... +.++ .-|.... +. ....+..-+.+.+..+
T Consensus 90 ~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e-~~-l~~~~~~~d~e~v~~l 167 (250)
T 1quu_A 90 VNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAM-ED-LQDMFIVHSIEEIQSL 167 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-TTCCCCCCSTTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HH-hccccccCCHHHHHHH
Confidence 46777788888888888777777777666654433 2221 1111110 00 0001122334455555
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045523 150 RSQLAYLQ---EEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQ 226 (634)
Q Consensus 150 k~~L~~Lq---kEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~ 226 (634)
......+. .+...+...+..+...+..|....+.+.. +. .+-...+++.|...-..|...-..
T Consensus 168 l~~h~~~~~~l~~~~~~~~~i~~l~~~~~~l~~~~~~~~~---------~~-----~~~~~~~~~~l~~~W~~L~~~~~~ 233 (250)
T 1quu_A 168 ITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRIS---------SS-----NPYSTVTMDELRTKWDKVKQLVPI 233 (250)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSC---------CS-----CTTCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---------CC-----CCcccCcHHHHHHHHHHHHHHHHH
Confidence 55555665 45555566666666666665554433210 00 011234577777777888877788
Q ss_pred HHHHHHHHH
Q 045523 227 RMQKLQHLA 235 (634)
Q Consensus 227 R~~kl~~L~ 235 (634)
|..++++..
T Consensus 234 R~~~L~~~l 242 (250)
T 1quu_A 234 RDQSLQEEL 242 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776654
No 43
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.74 E-value=3.5e+02 Score=23.64 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 36 LAVYGRKIDDAKISRAQLLRAIALSEAEVADIC 68 (634)
Q Consensus 36 l~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~ 68 (634)
++-+|+.|+.+...+++|.-+|..++..+..+-
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777766666665555543
No 44
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.29 E-value=3.4e+02 Score=23.26 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHH
Q 045523 51 AQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLK-TITPLLEDMRQRKI 105 (634)
Q Consensus 51 ~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~-~l~~~LEeLrk~K~ 105 (634)
..|++.+..-..++..++.-||-.. .+.-|+..+. .+.+....|.++-.
T Consensus 9 ~~li~t~s~niq~l~k~~~qlGTkr------D~~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 9 SNLIETFAEQSRVLEKECTKIGSKR------DSKELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSS------CCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666669999999999864 3567888888 88888877776543
No 45
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.13 E-value=3.3e+02 Score=23.02 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM 245 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L 245 (634)
++.+..|...+..++..-..-..++..+...+.+|-..|
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555555555555555554443
No 46
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=24.05 E-value=8.2e+02 Score=27.65 Aligned_cols=192 Identities=14% Similarity=0.173 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CC-CCCCCCHHHHHHH---------HHHHHHHHHH
Q 045523 35 CLAVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGH--CD-WTAGGNLRDKLKT---------ITPLLEDMRQ 102 (634)
Q Consensus 35 cl~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~--~~-~~~~~tL~eqL~~---------l~~~LEeLrk 102 (634)
...+|+...++. .|.. ...+.....++......|++|..- .. ..-..+|.+.-+. +...++.+..
T Consensus 372 a~s~Y~e~k~~l--vr~~-~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~lP~~l~~~~~~i~~~~g~~~l~~~~~~l~~ 448 (704)
T 2xs1_A 372 SLAAYNQRKADL--VNRS-IAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPE 448 (704)
T ss_dssp HHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHTTTTHHHHCSSTTSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHCCChHHHHHHhcCCCCHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 346677665543 2222 566777888888999999986421 11 0012234443322 2333334433
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 045523 103 RKIDRKNQFLQ---VLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQEEKSSRL---RKVMKHLSNVNS 176 (634)
Q Consensus 103 ~K~eR~~ef~e---l~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~LqkEKs~Rl---~kv~el~~~I~~ 176 (634)
.+......+.+ +....+.=+..+-... .. .-...+|..-...|+..+..++.-..+=. ..+......+..
T Consensus 449 l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~---g~-~w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~ 524 (704)
T 2xs1_A 449 LLQRNREILDESLRLLDEEEATDNDLRAKF---KE-RWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRD 524 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TT-TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333 3332222233332211 00 01123555555566666666665332221 223333333445
Q ss_pred HHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 177 LCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQSLQEVKIQRMQKLQHLAT 236 (634)
Q Consensus 177 L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~ 236 (634)
....|+.+..+ +...-|+.... .... ....+..|+..+.+|+..+.+|...+++|..
T Consensus 525 ~l~~L~~~~~~-l~~~~p~~~~~-~~~~-~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~ 581 (704)
T 2xs1_A 525 TIVLLCKPEPE-LNAAIPSANPA-KTMQ-GSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581 (704)
T ss_dssp HHHHHTSCHHH-HHHTSCCCCCC-GGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHH-HHhhCccCCCc-cccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666544 32333443211 1111 2368999999999999999999988877754
No 47
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=23.89 E-value=4.4e+02 Score=24.42 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 44 DDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQ 113 (634)
Q Consensus 44 de~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~e 113 (634)
.+....|++|...+++++..+.-...+|...-.. .+-+.-..+.|.+++|+.+-...+.+|..
T Consensus 95 ~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~-------~~EelR~kl~P~~eeL~~~~~~~~eeLr~ 157 (165)
T 1gs9_A 95 KELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQ-------STEELRVRLASHLRKLRKRLLRDADDLQK 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455677788888888888888777777753211 12222336677888887776666655543
No 48
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=23.59 E-value=6.9e+02 Score=26.79 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045523 277 MNNIKYVEGEVSRLEQLK 294 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK 294 (634)
..++...+.++..|+.+.
T Consensus 322 ~~Fl~~A~~~~~~L~~~~ 339 (457)
T 3obv_E 322 TSFVKDAQEQYNKLRMMH 339 (457)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666665554
No 49
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.33 E-value=91 Score=20.27 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045523 47 KISRAQLLRAIALSEAEVADI 67 (634)
Q Consensus 47 ~~~K~~L~qsIa~~~~EL~~L 67 (634)
...-++|.|.|+.++-|++.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 345578899999999888876
No 50
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=23.14 E-value=24 Score=23.39 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=6.8
Q ss_pred CCCCCCCC
Q 045523 500 RRNSEIPG 507 (634)
Q Consensus 500 ~~~~~~~~ 507 (634)
-||+||||
T Consensus 19 P~GsDIAG 26 (26)
T 1fgl_B 19 PRGSDIAX 26 (26)
T ss_pred CCcccccC
Confidence 57999998
No 51
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=23.09 E-value=74 Score=32.85 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=34.2
Q ss_pred CHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045523 248 PLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVL 303 (634)
Q Consensus 248 p~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~ 303 (634)
|.+||+.|......+ ...|+.++.+++.|+++|...|.+++.
T Consensus 353 pl~eQ~~I~~~l~~i--------------d~~i~~~~~~i~~L~~lk~~LL~~lf~ 394 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLFP 394 (406)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478899998776533 568899999999999999998888763
No 52
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.95 E-value=4e+02 Score=23.69 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhh--cCCCCHHHHHHHHHHHHHH
Q 045523 277 MNNIKYVEGEVSRLEQLKSSKMK---ELVLKKKLELAEILRKMHTVTETVGDFSIEAIE--SGSMDFMDLLEQIDLQIAK 351 (634)
Q Consensus 277 ~~tI~~le~EVeRLeeLK~~~mk---eLI~k~R~ELeeLWdk~~~s~eer~~F~~~~id--sg~~D~EeLL~~~E~EI~r 351 (634)
...++++++|+++|...-.++.. ...+.....|.+.-. |+-..+++..-+...-+ ++-.++..|+.........
T Consensus 8 ~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~-m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~ 86 (119)
T 2avr_X 8 VGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQ-VYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKK 86 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999887766533 333334444444311 11122333322222211 1122347788888888888
Q ss_pred HHHHHHhchHHHHHHHHHHH
Q 045523 352 AKEEASSRKEILEKVEKWFT 371 (634)
Q Consensus 352 LKe~~~srK~Ile~Vekw~s 371 (634)
|...-.....|.+-.++-..
T Consensus 87 Ld~eI~~qe~iI~nFe~Iq~ 106 (119)
T 2avr_X 87 LEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877777777776666533
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.51 E-value=5.1e+02 Score=27.25 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 25 DKMILEIEQECLAVYGRKIDD--AKISRAQLLRAIALSEAEVADICS 69 (634)
Q Consensus 25 d~ml~~lEqecl~vyr~kVde--~~~~K~~L~qsIa~~~~EL~~L~~ 69 (634)
+..+.++.+++..++.+...+ +....+-|.+.|.+.++-+..+-.
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 444555555555666666544 445566777888888887776644
No 54
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.94 E-value=7.2e+02 Score=27.06 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 045523 84 GNLRDKLKTITPLLEDMRQRKID 106 (634)
Q Consensus 84 ~tL~eqL~~l~~~LEeLrk~K~e 106 (634)
++|.++...+...+++|+....+
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~ 76 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLAD 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHH
Confidence 36666777888877777755443
No 55
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.87 E-value=5e+02 Score=24.38 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 045523 139 ADLSEQRLKELRSQLAYLQEEKSSRLRKVMKHLSNVNSLCMVLGLDFKDTVCKIHPTLNDPKASKDVSNDTIEKMATTIQ 218 (634)
Q Consensus 139 ~dLS~e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I~~L~~eLg~df~~~v~evhpsl~d~~~s~~LS~~~L~~L~~~l~ 218 (634)
-+||.++-..++...++.+.+...-..++.....++..|+.- -+.+...|.+|...+.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a----------------------~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA----------------------SSPDTAKINAVAKEME 123 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------------------SSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------CCCCHHHHHHHHHHHH
Confidence 589999999999988888888666655666655555544321 1234577777777777
Q ss_pred HHHHHH
Q 045523 219 SLQEVK 224 (634)
Q Consensus 219 ~LeeeK 224 (634)
.|+...
T Consensus 124 ~Lr~qL 129 (175)
T 3lay_A 124 SLGQKL 129 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665433
No 56
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=21.44 E-value=3.8e+02 Score=25.61 Aligned_cols=65 Identities=25% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q 045523 301 LVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDFMDLLEQIDLQIAKAKEEASSRKEILEK 365 (634)
Q Consensus 301 LI~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~EeLL~~~E~EI~rLKe~~~srK~Ile~ 365 (634)
+-.+=+.++.+++...--.+..+..|...+.-.+..+++++.+.++.++..+++.......+.+.
T Consensus 105 iT~~Gr~~l~~~l~~~~~~~~~~~~f~~kl~f~~~l~~~~~~~~L~~~~~~~~~~l~~l~~~~~~ 169 (204)
T 3l9f_A 105 ITESGKKELASYLQSDVNDEIFKSDFLMRLFFGNSLNDDDLEQLIREEIERKEEKIKRLSENLEI 169 (204)
T ss_dssp ECHHHHHHHHHHHHSCCCCCEEECHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EChHHHHHHHHHHhcccCCCCCccHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677788887654333444577665543446788999999999999988877766655443
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.89 E-value=1.6e+02 Score=22.51 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045523 43 IDDAKISRAQLLRAIALSEAEVADICSTLGE 73 (634)
Q Consensus 43 Vde~~~~K~~L~qsIa~~~~EL~~L~~eLge 73 (634)
|+......+.|.+.++.+.++++.||+.|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455677888888888888888887763
No 58
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.41 E-value=3.6e+02 Score=22.90 Aligned_cols=54 Identities=6% Similarity=0.156 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045523 50 RAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQR 103 (634)
Q Consensus 50 K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~ 103 (634)
|...+..|.....|...|...|....-..++..-..+..++..|+..|+.|+++
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544442211111112246666777777777776654
No 59
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.11 E-value=1.6e+02 Score=29.27 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045523 207 NDTIEKMATTIQSLQEVKIQRMQKLQHLATSLVELWNLM 245 (634)
Q Consensus 207 ~~~L~~L~~~l~~LeeeK~~R~~kl~~L~~~L~eLW~~L 245 (634)
.+-|..|...+..+...-..+.+.+..+...|.+|||.+
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777888888877777778888888999999999987
Done!