Query 045523
Match_columns 634
No_of_seqs 250 out of 480
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 04:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yf2a2 d.287.1.2 (A:221-425) 46.5 10 0.00075 32.3 5.0 42 248-303 157-198 (205)
2 d1ydxa2 d.287.1.2 (A:194-374) 37.9 19 0.0014 30.4 5.4 41 248-302 137-177 (181)
3 d1ydxa1 d.287.1.2 (A:1-193) Bi 37.3 17 0.0012 30.9 5.0 41 249-303 143-183 (193)
4 d1zkea1 a.30.6.1 (A:1-79) Hypo 33.0 65 0.0048 24.4 6.9 53 301-358 11-68 (79)
5 d1yf2a1 d.287.1.2 (A:1-220) Bi 30.4 30 0.0022 30.0 5.6 42 248-303 167-208 (220)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 29.8 62 0.0045 26.4 7.2 31 144-174 8-38 (133)
7 d1gs9a_ a.24.1.1 (A:) Apolipop 27.9 1.5E+02 0.011 24.3 10.2 70 37-113 67-136 (144)
8 d1vcsa1 a.47.2.1 (A:8-96) Vesi 25.9 1.3E+02 0.0093 23.2 8.0 54 50-103 29-82 (89)
9 d1f46a_ d.129.4.1 (A:) Cell-di 20.6 68 0.0049 26.8 5.7 46 109-158 91-136 (139)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 18.2 76 0.0055 24.7 5.0 65 7-71 11-83 (89)
No 1
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=46.48 E-value=10 Score=32.26 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=33.9
Q ss_pred CHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045523 248 PLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVL 303 (634)
Q Consensus 248 p~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~ 303 (634)
|.+||+.|......+ ++.|+.++..++.|+++|...|..++.
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~t 198 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLLT 198 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467888887776543 578899999999999999998888763
No 2
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=37.94 E-value=19 Score=30.37 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred CHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045523 248 PLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELV 302 (634)
Q Consensus 248 p~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI 302 (634)
|.++|+.|.+....+ ++.|+.++.+++.|+++|...|+++.
T Consensus 137 ~l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 137 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358899898876644 67899999999999999999888764
No 3
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=37.32 E-value=17 Score=30.95 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045523 249 LEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVL 303 (634)
Q Consensus 249 ~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~ 303 (634)
.+||+.+..+...+ +..|+.++.+++.|+++|...|++|+.
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67788887776543 678999999999999999999999985
No 4
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=33.03 E-value=65 Score=24.41 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhhhhhHhhhcCCCCH-----HHHHHHHHHHHHHHHHHHHh
Q 045523 301 LVLKKKLELAEILRKMHTVTETVGDFSIEAIESGSMDF-----MDLLEQIDLQIAKAKEEASS 358 (634)
Q Consensus 301 LI~k~R~ELeeLWdk~~~s~eer~~F~~~~idsg~~D~-----EeLL~~~E~EI~rLKe~~~s 358 (634)
=|+..|.||+-+-+...+|-..- + .|..|+.|- ..+|++++.||.+||+...+
T Consensus 11 ~IE~~q~eI~~lL~~AkiS~vDy---I--mIKRGS~DmPe~l~~~~l~qid~ev~kLK~~Ida 68 (79)
T d1zkea1 11 DIEDSQNEIEMLLKLANLSLGDF---I--EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHH---H--HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHh---h--eeecCcccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999988887765331 1 133565552 67899999999999987654
No 5
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=30.35 E-value=30 Score=30.01 Aligned_cols=42 Identities=36% Similarity=0.584 Sum_probs=34.7
Q ss_pred CHHHHHHHHhhhccccCCcccccCCCcCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045523 248 PLEEQEMFHNITSKIAALEPEITEPNFLSMNNIKYVEGEVSRLEQLKSSKMKELVL 303 (634)
Q Consensus 248 p~eEr~~F~~~~~~i~~S~~ei~~~~~LS~~tI~~le~EVeRLeeLK~~~mkeLI~ 303 (634)
|.++|+.|......+ .+.|+..+.+++.|+++|...|.+++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568888887776544 568889999999999999999988875
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.75 E-value=62 Score=26.39 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 144 QRLKELRSQLAYLQEEKSSRLRKVMKHLSNV 174 (634)
Q Consensus 144 e~LeeLk~~L~~LqkEKs~Rl~kv~el~~~I 174 (634)
.+++.|+.+++.|+.+...-...+.++...+
T Consensus 8 ~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~ 38 (133)
T d1fxkc_ 8 AQLNIYQSQVELIQQQMEAVRATISELEILE 38 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666554444444444333
No 7
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=27.93 E-value=1.5e+02 Score=24.28 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045523 37 AVYGRKIDDAKISRAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQRKIDRKNQFLQ 113 (634)
Q Consensus 37 ~vyr~kVde~~~~K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~K~eR~~ef~e 113 (634)
++..+.-.++...|++|...+.+++..|..-..++... -...+.+.-..+.|..++|+.+-...+.+|..
T Consensus 67 e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~-------~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~ 136 (144)
T d1gs9a_ 67 ETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAM-------LGQSTEELRVRLASHLRKLRKRLLRDADDLQK 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 8
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.90 E-value=1.3e+02 Score=23.25 Aligned_cols=54 Identities=6% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045523 50 RAQLLRAIALSEAEVADICSTLGEQPGHCDWTAGGNLRDKLKTITPLLEDMRQR 103 (634)
Q Consensus 50 K~~L~qsIa~~~~EL~~L~~eLge~~~~~~~~~~~tL~eqL~~l~~~LEeLrk~ 103 (634)
|...+..|.....|...|...|....-..++..-.++.-++..|+..|+.|+++
T Consensus 29 rk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~e 82 (89)
T d1vcsa1 29 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444442211111112346666788888888877754
No 9
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.59 E-value=68 Score=26.84 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHH
Q 045523 109 NQFLQVLNQLQIISNEICPKDNMYKIIEDEADLSEQRLKELRSQLAYLQE 158 (634)
Q Consensus 109 ~ef~el~~qI~~Lc~eL~~~~~~~~~~~d~~dLS~e~LeeLk~~L~~Lqk 158 (634)
.-|..+..-.+.||+.|++.-. ..+...+|.+.++.++.++.+++.
T Consensus 91 ~aFd~Ml~~a~~la~~l~g~l~----D~~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 91 QLFKLMLQSAQHIADEVGGVVL----DDQRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEE----CTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEE----CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567777788899999999821 233457999999999999998874
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.23 E-value=76 Score=24.66 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhC-CChHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 045523 7 FRPNSKIWDEVG-ESDNERDKMILEIEQ---ECLAVYGRKIDDAKI----SRAQLLRAIALSEAEVADICSTL 71 (634)
Q Consensus 7 L~eLq~IWdEIG-~~e~eRd~ml~~lEq---ecl~vyr~kVde~~~----~K~~L~qsIa~~~~EL~~L~~eL 71 (634)
..++..--+.|+ .+.++|...+.+++. |+.++++.|=-|++. .|..+...|.+.+.+|..|-.++
T Consensus 11 ~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~el 83 (89)
T d1vcsa1 11 TAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF 83 (89)
T ss_dssp HHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444344444 356778888877773 456666666555554 68888888999999988887655
Done!