Query 045525
Match_columns 295
No_of_seqs 77 out of 79
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4205 RNA-binding protein mu 98.5 2.5E-07 5.4E-12 88.9 6.1 82 200-289 97-182 (311)
2 PLN03134 glycine-rich RNA-bind 98.3 7.3E-06 1.6E-10 70.1 10.3 84 196-287 30-118 (144)
3 KOG0149 Predicted RNA-binding 98.2 7.2E-06 1.6E-10 76.3 9.1 83 202-290 11-102 (247)
4 KOG4205 RNA-binding protein mu 98.1 4.7E-06 1E-10 80.2 5.1 81 199-287 5-89 (311)
5 PLN03120 nucleic acid binding 98.0 3.3E-05 7.2E-10 72.9 10.5 74 199-281 3-78 (260)
6 TIGR01645 half-pint poly-U bin 98.0 2.8E-05 6.1E-10 80.8 10.1 82 199-287 203-288 (612)
7 PF14259 RRM_6: RNA recognitio 98.0 9.3E-06 2E-10 59.2 4.5 62 209-275 4-69 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.0 4.2E-05 9.1E-10 71.7 9.7 79 200-285 3-85 (352)
9 PF00076 RRM_1: RNA recognitio 97.9 2.4E-05 5.2E-10 55.9 5.9 62 209-275 4-69 (70)
10 smart00362 RRM_2 RNA recogniti 97.9 0.0001 2.2E-09 51.2 7.9 68 202-277 1-71 (72)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.8 8E-05 1.7E-09 69.8 9.2 78 200-284 269-350 (352)
12 TIGR01659 sex-lethal sex-letha 97.8 7.4E-05 1.6E-09 72.6 8.8 81 196-283 103-187 (346)
13 TIGR01622 SF-CC1 splicing fact 97.7 0.00021 4.6E-09 69.7 9.9 79 196-282 85-167 (457)
14 smart00360 RRM RNA recognition 97.7 0.00027 5.8E-09 48.8 7.4 64 209-277 2-70 (71)
15 KOG0113 U1 small nuclear ribon 97.6 0.00031 6.7E-09 67.7 8.8 76 195-277 96-175 (335)
16 cd00590 RRM RRM (RNA recogniti 97.5 0.00066 1.4E-08 47.3 8.0 65 209-278 5-73 (74)
17 TIGR01628 PABP-1234 polyadenyl 97.5 0.00033 7.1E-09 70.7 8.9 78 199-283 284-364 (562)
18 COG0724 RNA-binding proteins ( 97.5 0.00063 1.4E-08 57.7 9.1 75 200-282 115-194 (306)
19 TIGR01659 sex-lethal sex-letha 97.5 0.00045 9.8E-09 67.2 9.1 80 199-283 192-275 (346)
20 TIGR01628 PABP-1234 polyadenyl 97.5 0.00052 1.1E-08 69.3 9.1 71 202-280 2-77 (562)
21 TIGR01642 U2AF_lg U2 snRNP aux 97.4 0.00095 2.1E-08 65.9 10.6 80 196-283 291-375 (509)
22 TIGR01622 SF-CC1 splicing fact 97.4 0.0009 2E-08 65.3 10.1 73 199-279 185-262 (457)
23 TIGR01648 hnRNP-R-Q heterogene 97.4 0.0006 1.3E-08 70.7 8.5 77 196-278 54-133 (578)
24 PLN03121 nucleic acid binding 97.4 0.0018 3.9E-08 60.7 10.6 72 199-281 4-79 (243)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.3 0.001 2.2E-08 66.6 8.9 76 200-284 2-79 (481)
26 TIGR01642 U2AF_lg U2 snRNP aux 97.2 0.0031 6.7E-08 62.3 10.9 74 195-279 170-256 (509)
27 TIGR01645 half-pint poly-U bin 97.1 0.0024 5.3E-08 66.7 9.6 74 199-279 106-183 (612)
28 TIGR01648 hnRNP-R-Q heterogene 96.9 0.004 8.7E-08 64.7 8.9 85 197-286 135-225 (578)
29 KOG0144 RNA-binding protein CU 96.8 0.0017 3.8E-08 65.2 5.5 106 160-287 96-210 (510)
30 smart00361 RRM_1 RNA recogniti 96.4 0.012 2.6E-07 43.9 6.2 60 215-277 2-69 (70)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 95.9 0.057 1.2E-06 54.2 10.0 72 199-280 274-348 (481)
32 KOG0116 RasGAP SH3 binding pro 95.3 0.055 1.2E-06 54.5 7.7 82 196-286 284-370 (419)
33 KOG0132 RNA polymerase II C-te 95.2 0.032 6.9E-07 59.7 5.9 74 200-284 421-499 (894)
34 KOG0144 RNA-binding protein CU 95.2 0.043 9.4E-07 55.5 6.3 72 198-275 32-107 (510)
35 PLN03213 repressor of silencin 94.7 0.095 2.1E-06 54.1 7.4 69 201-282 11-87 (759)
36 KOG0127 Nucleolar protein fibr 94.7 0.14 3E-06 53.3 8.5 80 201-285 293-380 (678)
37 KOG0117 Heterogeneous nuclear 94.4 0.092 2E-06 53.4 6.4 69 200-277 83-158 (506)
38 PF13893 RRM_5: RNA recognitio 93.9 0.17 3.6E-06 35.6 5.2 53 218-277 1-53 (56)
39 KOG1457 RNA binding protein (c 93.8 0.3 6.4E-06 46.2 8.1 89 197-290 31-127 (284)
40 KOG0153 Predicted RNA-binding 93.2 0.41 8.8E-06 47.4 8.2 68 201-278 229-298 (377)
41 KOG4212 RNA-binding protein hn 92.9 0.37 7.9E-06 49.3 7.6 83 190-279 34-120 (608)
42 KOG0108 mRNA cleavage and poly 92.1 0.33 7.2E-06 49.2 6.3 66 201-276 19-91 (435)
43 KOG4207 Predicted splicing fac 91.5 0.38 8.2E-06 45.0 5.5 68 211-283 23-95 (256)
44 KOG0129 Predicted RNA-binding 91.3 0.45 9.8E-06 49.0 6.3 80 198-281 368-452 (520)
45 KOG0131 Splicing factor 3b, su 91.0 0.47 1E-05 43.5 5.4 73 198-281 7-87 (203)
46 KOG0125 Ataxin 2-binding prote 90.3 1.2 2.7E-05 44.0 8.0 79 195-283 91-174 (376)
47 KOG0105 Alternative splicing f 89.2 1.1 2.3E-05 41.6 6.2 72 198-277 4-77 (241)
48 KOG0107 Alternative splicing f 87.9 1.2 2.5E-05 40.7 5.5 57 200-264 10-71 (195)
49 KOG4206 Spliceosomal protein s 87.4 2.3 5E-05 39.7 7.3 55 201-261 10-70 (221)
50 KOG0127 Nucleolar protein fibr 86.8 0.99 2.1E-05 47.3 4.9 77 201-284 6-86 (678)
51 KOG0114 Predicted RNA-binding 86.6 4.5 9.8E-05 34.4 7.9 55 195-255 13-69 (124)
52 KOG0124 Polypyrimidine tract-b 86.2 2 4.3E-05 43.3 6.5 82 196-281 203-288 (544)
53 KOG0148 Apoptosis-promoting RN 84.5 3 6.6E-05 40.5 6.7 62 213-278 74-140 (321)
54 KOG0126 Predicted RNA-binding 84.5 0.37 8E-06 44.3 0.6 71 199-276 34-108 (219)
55 KOG0123 Polyadenylate-binding 84.0 5 0.00011 39.7 8.3 76 202-288 78-158 (369)
56 KOG0122 Translation initiation 83.9 1.8 3.9E-05 41.3 4.9 57 199-261 188-249 (270)
57 KOG4211 Splicing factor hnRNP- 83.1 3.6 7.7E-05 42.5 6.9 71 201-275 8-88 (510)
58 KOG0148 Apoptosis-promoting RN 81.1 6 0.00013 38.5 7.3 69 196-275 160-230 (321)
59 KOG0129 Predicted RNA-binding 81.0 4 8.7E-05 42.3 6.4 75 200-283 259-355 (520)
60 KOG0121 Nuclear cap-binding pr 80.1 4.7 0.0001 35.4 5.7 57 198-260 34-95 (153)
61 KOG0146 RNA-binding protein ET 78.3 2.5 5.3E-05 41.1 3.7 62 197-262 16-79 (371)
62 KOG4208 Nucleolar RNA-binding 77.9 5.7 0.00012 37.0 5.9 48 206-255 52-104 (214)
63 KOG4211 Splicing factor hnRNP- 72.7 6 0.00013 40.9 5.0 63 209-277 109-176 (510)
64 KOG4454 RNA binding protein (R 72.5 2.5 5.4E-05 40.0 2.1 61 195-262 4-71 (267)
65 PF10309 DUF2414: Protein of u 71.9 17 0.00037 27.6 6.1 53 202-261 7-60 (62)
66 TIGR03147 cyt_nit_nrfF cytochr 69.7 3.3 7.3E-05 35.5 2.1 15 213-227 74-88 (126)
67 KOG0111 Cyclophilin-type pepti 68.2 11 0.00023 36.0 5.2 58 196-259 6-68 (298)
68 PF08777 RRM_3: RNA binding mo 67.4 6.5 0.00014 32.2 3.3 65 205-275 4-72 (105)
69 KOG0145 RNA-binding protein EL 66.9 8.5 0.00018 37.4 4.4 62 195-261 122-187 (360)
70 KOG0147 Transcriptional coacti 66.7 6.9 0.00015 40.9 4.0 57 213-277 290-352 (549)
71 KOG0117 Heterogeneous nuclear 66.0 31 0.00067 35.7 8.4 81 196-285 160-250 (506)
72 KOG0123 Polyadenylate-binding 65.9 9 0.0002 38.0 4.6 81 197-284 267-350 (369)
73 PF05172 Nup35_RRM: Nup53/35/4 65.8 18 0.00039 29.7 5.6 54 209-264 12-75 (100)
74 PF03918 CcmH: Cytochrome C bi 64.9 4.6 0.0001 35.2 2.1 15 213-227 74-88 (148)
75 PRK10144 formate-dependent nit 64.6 4.9 0.00011 34.6 2.1 15 213-227 74-88 (126)
76 PF15513 DUF4651: Domain of un 59.9 15 0.00033 28.0 3.8 34 216-252 9-44 (62)
77 KOG0131 Splicing factor 3b, su 56.8 23 0.0005 32.7 5.1 68 213-284 108-178 (203)
78 KOG0109 RNA-binding protein LA 52.7 35 0.00076 33.7 5.9 66 205-283 4-74 (346)
79 KOG0533 RRM motif-containing p 51.2 46 0.00099 31.6 6.4 77 198-279 79-158 (243)
80 KOG0145 RNA-binding protein EL 50.5 48 0.0011 32.4 6.4 80 197-283 37-121 (360)
81 PF14605 Nup35_RRM_2: Nup53/35 50.1 54 0.0012 23.5 5.3 46 209-260 7-53 (53)
82 KOG2971 RNA-binding protein re 49.9 16 0.00036 35.2 3.2 66 194-283 146-213 (299)
83 PF04059 RRM_2: RNA recognitio 45.4 72 0.0016 26.1 5.9 53 209-262 7-64 (97)
84 KOG0106 Alternative splicing f 44.6 19 0.00042 33.6 2.7 47 207-261 5-53 (216)
85 KOG4660 Protein Mei2, essentia 42.0 23 0.0005 37.2 3.1 57 197-261 72-130 (549)
86 KOG4209 Splicing factor RNPS1, 36.6 84 0.0018 29.3 5.7 61 197-261 98-161 (231)
87 PF10866 DUF2704: Protein of u 34.5 65 0.0014 29.0 4.3 37 16-60 54-90 (168)
88 PF11161 DUF2944: Protein of u 34.2 36 0.00077 31.3 2.7 22 208-229 42-63 (187)
89 COG5606 Uncharacterized conser 32.3 60 0.0013 26.6 3.4 38 47-87 27-65 (91)
90 KOG0146 RNA-binding protein ET 30.0 64 0.0014 31.7 3.8 77 199-285 284-367 (371)
91 COG3088 CcmH Uncharacterized p 29.5 39 0.00084 30.1 2.1 15 213-227 78-92 (153)
92 TIGR02118 conserved hypothetic 28.1 2E+02 0.0043 22.5 5.8 57 205-262 3-72 (100)
93 COG5132 BUD31 Cell cycle contr 25.5 1.2E+02 0.0025 26.5 4.2 56 22-95 50-107 (146)
94 KOG2202 U2 snRNP splicing fact 25.4 38 0.00083 32.5 1.4 55 218-278 85-143 (260)
95 KOG1548 Transcription elongati 23.4 1.6E+02 0.0034 29.8 5.2 69 200-278 134-216 (382)
96 PF14214 Helitron_like_N: Heli 22.9 1.8E+02 0.0039 25.2 5.1 24 226-250 159-183 (184)
97 PF13797 Post_transc_reg: Post 22.7 69 0.0015 25.6 2.2 17 210-226 24-41 (87)
98 KOG0415 Predicted peptidyl pro 22.1 1.9E+02 0.0042 29.5 5.6 76 195-275 234-311 (479)
99 PF08141 SspH: Small acid-solu 22.0 1.5E+02 0.0033 22.3 3.7 29 256-284 6-34 (58)
100 PF15337 Vasculin: Vascular pr 21.3 66 0.0014 26.7 1.8 14 211-224 32-45 (97)
101 PF03880 DbpA: DbpA RNA bindin 21.2 3.6E+02 0.0078 20.2 5.8 68 202-279 2-73 (74)
102 TIGR03853 matur_matur probable 20.9 95 0.0021 24.7 2.6 21 208-228 13-33 (77)
103 TIGR02861 SASP_H small acid-so 20.8 1.6E+02 0.0036 22.1 3.7 29 256-284 6-34 (58)
104 COG1259 Uncharacterized conser 20.7 2E+02 0.0044 25.5 4.9 47 206-254 52-98 (151)
105 KOG4307 RNA binding protein RB 20.5 1.3E+02 0.0029 33.1 4.3 46 209-256 873-922 (944)
No 1
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.46 E-value=2.5e-07 Score=88.92 Aligned_cols=82 Identities=20% Similarity=0.372 Sum_probs=70.8
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
-+.||| +|+| ++|.|+++||+ +|| .+.+.+.|.+ ..+...||+|.|++++.||.++.- -...+|||.+
T Consensus 97 tkkiFv---GG~~~~~~e~~~r~yfe-~~g-~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~---~f~~~~gk~v 168 (311)
T KOG4205|consen 97 TKKIFV---GGLPPDTTEEDFKDYFE-QFG-KVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ---KFHDFNGKKV 168 (311)
T ss_pred eeEEEe---cCcCCCCchHHHhhhhh-ccc-eeEeeEEeecccccccccceeeEeccccccceeccc---ceeeecCcee
Confidence 345555 8999 99999999999 599 8888888888 899999999999999999999984 2348999999
Q ss_pred EEEecccCCCCCCC
Q 045525 276 RVRRFVPKPAPVAS 289 (295)
Q Consensus 276 Warky~pk~~~~~~ 289 (295)
.+++++||......
T Consensus 169 evkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 169 EVKRAIPKEVMQST 182 (311)
T ss_pred eEeeccchhhcccc
Confidence 99999999877644
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.28 E-value=7.3e-06 Score=70.14 Aligned_cols=84 Identities=23% Similarity=0.261 Sum_probs=66.5
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.....+++|| ++.| +||++|+++|.. || + |+++.|. + +++...||+|.|.+++.++.+|...+ ...|
T Consensus 30 ~~~~~~~lfV---gnL~~~~te~~L~~~F~~-~G-~-I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln--g~~i 101 (144)
T PLN03134 30 LRLMSTKLFI---GGLSWGTDDASLRDAFAH-FG-D-VVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD--GKEL 101 (144)
T ss_pred ccCCCCEEEE---eCCCCCCCHHHHHHHHhc-CC-C-eEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC--CCEE
Confidence 4556678999 8888 999999999995 99 4 5555443 3 78899999999999999999887532 2379
Q ss_pred CCceeEEEecccCCCCC
Q 045525 271 HGKDIRVRRFVPKPAPV 287 (295)
Q Consensus 271 ngk~vWarky~pk~~~~ 287 (295)
+|+.+-+....+|++.+
T Consensus 102 ~Gr~l~V~~a~~~~~~~ 118 (144)
T PLN03134 102 NGRHIRVNPANDRPSAP 118 (144)
T ss_pred CCEEEEEEeCCcCCCCC
Confidence 99999888777766554
No 3
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=7.2e-06 Score=76.29 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=65.4
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhC-CCCcccEEECCceeE
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILG-ENELKQFDIHGKDIR 276 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~-g~~~~kf~Ingk~vW 276 (295)
|.=..|.+|.| -+.|++++||++ || +.+|+|.+-| ++++.+||+|+|+..+...+... -+. .|+||..=
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeq-fG-eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p----iIdGR~aN 84 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQ-FG-EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP----IIDGRKAN 84 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHH-hC-ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC----cccccccc
Confidence 34456779999 678899999995 99 9999999999 99999999999999999888776 344 78998876
Q ss_pred EEec----ccCCCCCCCC
Q 045525 277 VRRF----VPKPAPVASP 290 (295)
Q Consensus 277 arky----~pk~~~~~~~ 290 (295)
|.-. .||+.++.+|
T Consensus 85 cnlA~lg~~pR~~~~~~~ 102 (247)
T KOG0149|consen 85 CNLASLGGKPRPVPPSQP 102 (247)
T ss_pred cchhhhcCccCCCCCCCc
Confidence 5542 3454444333
No 4
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.06 E-value=4.7e-06 Score=80.23 Aligned_cols=81 Identities=17% Similarity=0.354 Sum_probs=73.2
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
|..++|| +|.. .+++.+++||+ +|| +++|.+.|.+ +++.+.||+|.|.+++-|+++|+-.. ..|.||.
T Consensus 5 ~~~Klfi---Ggisw~ttee~Lr~yf~-~~G-ev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~---h~~dgr~ 76 (311)
T KOG4205|consen 5 ESGKLFI---GGLSWETTEESLREYFS-QFG-EVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART---HKLDGRS 76 (311)
T ss_pred CCcceee---cCcCccccHHHHHHHhc-ccC-ceeeEEEeccCCCCCcccccceecCCCcchheeecccc---cccCCcc
Confidence 7789999 9998 99999999995 699 9999999999 99999999999999999999999533 3899999
Q ss_pred eEEEecccCCCCC
Q 045525 275 IRVRRFVPKPAPV 287 (295)
Q Consensus 275 vWarky~pk~~~~ 287 (295)
|..++.+|+....
T Consensus 77 ve~k~av~r~~~~ 89 (311)
T KOG4205|consen 77 VEPKRAVSREDQT 89 (311)
T ss_pred ccceeccCccccc
Confidence 9999999987554
No 5
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.05 E-value=3.3e-05 Score=72.86 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
+-||+|| +|.| +||+||++||. .|| .|++|.|...++..+||+|+|.+++..+..|.- ..-.|+|+.+.
T Consensus 3 ~~rtVfV---gNLs~~tTE~dLrefFS-~~G--~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllL---nG~~l~gr~V~ 73 (260)
T PLN03120 3 QVRTVKV---SNVSLKATERDIKEFFS-FSG--DIEYVEMQSENERSQIAYVTFKDPQGAETALLL---SGATIVDQSVT 73 (260)
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHH-hcC--CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHh---cCCeeCCceEE
Confidence 3589999 8998 99999999998 499 888888876455679999999999887766641 11278999986
Q ss_pred EEecc
Q 045525 277 VRRFV 281 (295)
Q Consensus 277 arky~ 281 (295)
+....
T Consensus 74 Vt~a~ 78 (260)
T PLN03120 74 ITPAE 78 (260)
T ss_pred EEecc
Confidence 66544
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.01 E-value=2.8e-05 Score=80.81 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
..+++|| +|.| +++++|+++|.+ || ++.....+.+ +++.++||+|.|.+.+.....+... ..+.|+|+.
T Consensus 203 ~~~rLfV---gnLp~~vteedLk~lFs~-FG-~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~am--Ng~elgGr~ 275 (612)
T TIGR01645 203 KFNRIYV---ASVHPDLSETDIKSVFEA-FG-EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQY 275 (612)
T ss_pred ccceEEe---ecCCCCCCHHHHHHHHhh-cC-CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHh--CCCeeCCeE
Confidence 4578888 8999 999999999995 99 6555545555 6789999999999999999888873 366999999
Q ss_pred eEEEecccCCCCC
Q 045525 275 IRVRRFVPKPAPV 287 (295)
Q Consensus 275 vWarky~pk~~~~ 287 (295)
+-+.+.++++..-
T Consensus 276 LrV~kAi~pP~~~ 288 (612)
T TIGR01645 276 LRVGKCVTPPDAL 288 (612)
T ss_pred EEEEecCCCcccc
Confidence 9999999765543
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.99 E-value=9.3e-06 Score=59.22 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=51.3
Q ss_pred CCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 209 KGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 209 ~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
+|.| ++++||+++|.+ || .|+.+.|.. .++...+|.|.|.+++...++|.-.+ +..++|+++
T Consensus 4 ~nlp~~~~~~~l~~~f~~-~g--~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~--~~~~~g~~l 69 (70)
T PF14259_consen 4 SNLPPSTTEEDLRNFFSR-FG--PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN--GKEIDGRKL 69 (70)
T ss_dssp ESSTTT--HHHHHHHCTT-SS--BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT--TEEETTEEE
T ss_pred eCCCCCCCHHHHHHHHHh-cC--CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC--CcEECCEEc
Confidence 7888 999999999996 89 588998887 46679999999999999999988432 568999987
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.97 E-value=4.2e-05 Score=71.68 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=63.8
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
..+||| ++.| ++|+||+++|.+ || +..+--.|.+ +++..+||+|-|.+++..+..|..-+ ...|.|+.+
T Consensus 3 ~~~l~V---~nLp~~~~e~~l~~~F~~-~G-~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~--g~~l~g~~i 75 (352)
T TIGR01661 3 KTNLIV---NYLPQTMTQEEIRSLFTS-IG-EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLN--GLRLQNKTI 75 (352)
T ss_pred CcEEEE---eCCCCCCCHHHHHHHHHc-cC-CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcc--cEEECCeeE
Confidence 458888 9999 999999999996 99 6666555655 78899999999999999888887533 357889998
Q ss_pred EEEecccCCC
Q 045525 276 RVRRFVPKPA 285 (295)
Q Consensus 276 Warky~pk~~ 285 (295)
-++...|+..
T Consensus 76 ~v~~a~~~~~ 85 (352)
T TIGR01661 76 KVSYARPSSD 85 (352)
T ss_pred EEEeeccccc
Confidence 8877666653
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.95 E-value=2.4e-05 Score=55.89 Aligned_cols=62 Identities=29% Similarity=0.348 Sum_probs=49.0
Q ss_pred CCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 209 KGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 209 ~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
+|.| +|++||+++|.+ || +. +.+.|.. .+....||.|.|.+.+..+.++..-+. ..++|+.+
T Consensus 4 ~nlp~~~t~~~l~~~f~~-~g-~i-~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g--~~~~~~~i 69 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQ-FG-KI-ESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG--KKINGRKI 69 (70)
T ss_dssp ESETTTSSHHHHHHHHHT-TS-TE-EEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEE
T ss_pred cCCCCcCCHHHHHHHHHH-hh-hc-ccccccccccccccceEEEEEcCHHHHHHHHHHcCC--CEECccCc
Confidence 8889 999999999996 99 55 4444444 788999999999999998888873221 46777754
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=97.87 E-value=0.0001 Score=51.16 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=51.4
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEE
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWa 277 (295)
|+|| +|.| .+++||+++|. .|| ++ ..+.|.. .+....||.|.|.+.+..+.++...+. ..++|+++-+
T Consensus 1 ~v~i---~~l~~~~~~~~l~~~~~-~~g-~v-~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~--~~~~~~~i~v 71 (72)
T smart00362 1 TLFV---GNLPPDVTEEDLKELFS-KFG-PI-ESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNG--TKLGGRPLRV 71 (72)
T ss_pred CEEE---cCCCCcCCHHHHHHHHH-hcC-CE-EEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCC--cEECCEEEee
Confidence 4566 7888 89999999998 599 54 4555554 456679999999999998888875433 4568887654
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.85 E-value=8e-05 Score=69.79 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=59.4
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
.+++|| ++.| .++++|+++|. +|| ++.+.-++.+ +++..+||+|.|.+++.....+..-+. +.++||.|
T Consensus 269 ~~~lfV---~NL~~~~~e~~L~~~F~-~fG-~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG--~~~~gr~i 341 (352)
T TIGR01661 269 GYCIFV---YNLSPDTDETVLWQLFG-PFG-AVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG--YTLGNRVL 341 (352)
T ss_pred CcEEEE---eCCCCCCCHHHHHHHHH-hCC-CeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC--CEECCeEE
Confidence 457888 9999 99999999999 599 5444444444 799999999999998876666553222 36899999
Q ss_pred EEEecccCC
Q 045525 276 RVRRFVPKP 284 (295)
Q Consensus 276 Warky~pk~ 284 (295)
-+.-..+|.
T Consensus 342 ~V~~~~~~~ 350 (352)
T TIGR01661 342 QVSFKTNKA 350 (352)
T ss_pred EEEEccCCC
Confidence 887776664
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.82 E-value=7.4e-05 Score=72.58 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=62.5
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
...++++||| ++.| +||+||+++|.. || ++++..+|.+ +++...||+|.|.+++..+..+..-+ ...+.
T Consensus 103 ~~~~~~~LfV---gnLp~~~te~~L~~lF~~-~G-~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln--G~~l~ 175 (346)
T TIGR01659 103 TNNSGTNLIV---NYLPQDMTDRELYALFRT-IG-PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN--GITVR 175 (346)
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cC-CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC--CCccC
Confidence 3457889999 9999 999999999995 99 6555555555 78899999999999998877775422 23568
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
||.+.+....|.
T Consensus 176 gr~i~V~~a~p~ 187 (346)
T TIGR01659 176 NKRLKVSYARPG 187 (346)
T ss_pred Cceeeeeccccc
Confidence 888877755443
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.70 E-value=0.00021 Score=69.69 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
...+.||||| ++.| +++++|++||.. || .+.+..+|.+ ++...+||+|.|.+.+.....|.- ....+.
T Consensus 85 ~~~~~~~l~V---~nlp~~~~~~~l~~~F~~-~G-~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l---~g~~~~ 156 (457)
T TIGR01622 85 AERDDRTVFV---LQLALKARERDLYEFFSK-VG-KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALAL---TGQMLL 156 (457)
T ss_pred cccCCcEEEE---eCCCCCCCHHHHHHHHHh-cC-CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh---CCCEEC
Confidence 3457899999 8999 999999999995 99 5444444444 788999999999999998888752 223678
Q ss_pred CceeEEEeccc
Q 045525 272 GKDIRVRRFVP 282 (295)
Q Consensus 272 gk~vWarky~p 282 (295)
|+.+.++....
T Consensus 157 g~~i~v~~~~~ 167 (457)
T TIGR01622 157 GRPIIVQSSQA 167 (457)
T ss_pred CeeeEEeecch
Confidence 99998876543
No 14
>smart00360 RRM RNA recognition motif.
Probab=97.67 E-value=0.00027 Score=48.76 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=48.4
Q ss_pred CCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEE
Q 045525 209 KGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 209 ~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWa 277 (295)
+|.| ++++||+++|. .|| .|+.+.+.. +++...||.|.|.+.+....++...+ ...++|+++-+
T Consensus 2 ~~l~~~~~~~~l~~~f~-~~g--~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~--~~~~~~~~~~v 70 (71)
T smart00360 2 GNLPPDVTEEELRELFS-KFG--KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN--GKELDGRPLKV 70 (71)
T ss_pred CCCCcccCHHHHHHHHH-hhC--CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC--CCeeCCcEEEe
Confidence 3555 89999999998 599 455566555 46677899999999999999887544 34568887643
No 15
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.58 E-value=0.00031 Score=67.66 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=61.1
Q ss_pred CCCCCCceEEEEccC-CcccCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 195 NDADTDRTLFATFSK-GHPISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~-G~Pvse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.+-+-++|||| ++ .|-.+|++|++.|+ +|| -|++|.|-. +|.+.+||+|+|..+..+...--. ..=+.|
T Consensus 96 a~gDPy~TLFv--~RLnydT~EskLrreF~-~YG--~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~--adG~~I 168 (335)
T KOG0113|consen 96 AIGDPYKTLFV--ARLNYDTSESKLRREFE-KYG--PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKD--ADGIKI 168 (335)
T ss_pred ccCCccceeee--eeccccccHHHHHHHHH-hcC--cceeEEEeeecccCCccceEEEEeccHHHHHHHHHh--ccCcee
Confidence 34577999999 33 67799999999999 599 788887766 999999999999999887666553 335578
Q ss_pred CCceeEE
Q 045525 271 HGKDIRV 277 (295)
Q Consensus 271 ngk~vWa 277 (295)
+|+.|-+
T Consensus 169 dgrri~V 175 (335)
T KOG0113|consen 169 DGRRILV 175 (335)
T ss_pred cCcEEEE
Confidence 9998843
No 16
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.55 E-value=0.00066 Score=47.29 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEEE
Q 045525 209 KGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRVR 278 (295)
Q Consensus 209 ~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWar 278 (295)
+|.| ++++||+++|.+ || -|+.+.|.. .+...++|.|.|++.+....++...+.. .++|+++-++
T Consensus 5 ~~l~~~~~~~~i~~~~~~-~g--~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~--~~~~~~~~v~ 73 (74)
T cd00590 5 GNLPPDVTEEDLRELFSK-FG--KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK--ELGGRPLRVE 73 (74)
T ss_pred eCCCCccCHHHHHHHHHh-cC--CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEe
Confidence 7887 899999999996 89 456777765 3356789999999999988888754333 3788887654
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.54 E-value=0.00033 Score=70.69 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=62.8
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
...++|| +|.| ++++|++++|. +|| .+.+...|.+ .++..+||+|.|.+.+....++...+. ..++||.+
T Consensus 284 ~~~~l~V---~nl~~~~~~~~L~~~F~-~~G-~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g--~~~~gk~l 356 (562)
T TIGR01628 284 QGVNLYV---KNLDDTVTDEKLRELFS-ECG-EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG--RMLGGKPL 356 (562)
T ss_pred CCCEEEE---eCCCCccCHHHHHHHHH-hcC-CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC--CeeCCcee
Confidence 3457888 8888 99999999999 499 7766667776 789999999999999998888764333 57899999
Q ss_pred EEEecccC
Q 045525 276 RVRRFVPK 283 (295)
Q Consensus 276 Warky~pk 283 (295)
-+....+|
T Consensus 357 ~V~~a~~k 364 (562)
T TIGR01628 357 YVALAQRK 364 (562)
T ss_pred EEEeccCc
Confidence 77665554
No 18
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.52 E-value=0.00063 Score=57.69 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=61.8
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
.+++|| ++.| ++++||+++|.. || -|.++.|.. ++...+||+|.|.+++....++.... ...++|+.
T Consensus 115 ~~~l~v---~nL~~~~~~~~l~~~F~~-~g--~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~--~~~~~~~~ 186 (306)
T COG0724 115 NNTLFV---GNLPYDVTEEDLRELFKK-FG--PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN--GKELEGRP 186 (306)
T ss_pred CceEEE---eCCCCCCCHHHHHHHHHh-cC--ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC--CCeECCce
Confidence 689999 9998 999999999995 99 444554443 79999999999999999887777533 56899999
Q ss_pred eEEEeccc
Q 045525 275 IRVRRFVP 282 (295)
Q Consensus 275 vWarky~p 282 (295)
+.++...+
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999654
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.51 E-value=0.00045 Score=67.19 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=60.7
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
.+.++|| .+.| +||+||+++|. +|| ++++..++.+ +++...||+|.|.+.+..+..+..-+...+...++.
T Consensus 192 ~~~~lfV---~nLp~~vtee~L~~~F~-~fG-~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~ 266 (346)
T TIGR01659 192 KDTNLYV---TNLPRTITDDQLDTIFG-KYG-QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQP 266 (346)
T ss_pred ccceeEE---eCCCCcccHHHHHHHHH-hcC-CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 4567888 8999 99999999997 699 6655555545 788889999999999998888876555545445567
Q ss_pred eEEEecccC
Q 045525 275 IRVRRFVPK 283 (295)
Q Consensus 275 vWarky~pk 283 (295)
+-++....+
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 766655544
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.46 E-value=0.00052 Score=69.28 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=55.5
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
|||| ++.| +||++|+++|.+ || . |++|.+ .+ ++++.+||+|.|.+.+...+.|...+ ...|+||.+.
T Consensus 2 sl~V---gnLp~~vte~~L~~~F~~-~G-~-v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln--~~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYV---GDLDPDVTEAKLYDLFKP-FG-P-VLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMN--FKRLGGKPIR 73 (562)
T ss_pred eEEE---eCCCCCCCHHHHHHHHHh-cC-C-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC--CCEECCeeEE
Confidence 6777 9988 999999999994 99 6 455544 44 68889999999999999988886321 2358999987
Q ss_pred EEec
Q 045525 277 VRRF 280 (295)
Q Consensus 277 arky 280 (295)
+...
T Consensus 74 i~~s 77 (562)
T TIGR01628 74 IMWS 77 (562)
T ss_pred eecc
Confidence 6543
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.44 E-value=0.00095 Score=65.92 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=61.0
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
+++..++||| +|.| +++++|+++|.. || . |+.+.+. + ++...+||+|.|.+.+..+.++.+-+. +.|
T Consensus 291 ~~~~~~~l~v---~nlp~~~~~~~l~~~f~~-~G-~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g--~~~ 362 (509)
T TIGR01642 291 VLDSKDRIYI---GNLPLYLGEDQIKELLES-FG-D-LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG--KDT 362 (509)
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC-C-eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 4566789999 8999 999999999995 99 4 5555443 3 688899999999999888777654222 257
Q ss_pred CCceeEEEecccC
Q 045525 271 HGKDIRVRRFVPK 283 (295)
Q Consensus 271 ngk~vWarky~pk 283 (295)
+|+.+-+++....
T Consensus 363 ~~~~l~v~~a~~~ 375 (509)
T TIGR01642 363 GDNKLHVQRACVG 375 (509)
T ss_pred CCeEEEEEECccC
Confidence 8888877766543
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.43 E-value=0.0009 Score=65.32 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=58.2
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
..+++|| +|.| +++++|+++|. .|| -|+.|.+.. +++..+||+|.|.+.+.....+..-+. +.|+|+
T Consensus 185 ~~~~l~v---~nl~~~~te~~l~~~f~-~~G--~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~i~g~ 256 (457)
T TIGR01622 185 NFLKLYV---GNLHFNITEQELRQIFE-PFG--DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG--FELAGR 256 (457)
T ss_pred CCCEEEE---cCCCCCCCHHHHHHHHH-hcC--CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC--cEECCE
Confidence 3789999 9999 99999999998 599 456665544 668899999999999998877665333 688999
Q ss_pred eeEEEe
Q 045525 274 DIRVRR 279 (295)
Q Consensus 274 ~vWark 279 (295)
.+=+..
T Consensus 257 ~i~v~~ 262 (457)
T TIGR01622 257 PIKVGY 262 (457)
T ss_pred EEEEEE
Confidence 985544
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.37 E-value=0.0006 Score=70.71 Aligned_cols=77 Identities=17% Similarity=0.077 Sum_probs=58.9
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
.|+...+||| ++.| ++|+||+++|.+ || .+++...|.+ ++++.+||+|.|.+++..+..|...+...+ .+|
T Consensus 54 ~p~~~~~lFV---gnLp~~~tEd~L~~~F~~-~G-~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i-~~G 127 (578)
T TIGR01648 54 QPGRGCEVFV---GKIPRDLYEDELVPLFEK-AG-PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI-RPG 127 (578)
T ss_pred CCCCCCEEEe---CCCCCCCCHHHHHHHHHh-hC-CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCee-cCC
Confidence 3556688999 9999 999999999995 99 7666656666 899999999999999998888764332222 246
Q ss_pred ceeEEE
Q 045525 273 KDIRVR 278 (295)
Q Consensus 273 k~vWar 278 (295)
|.+++.
T Consensus 128 r~l~V~ 133 (578)
T TIGR01648 128 RLLGVC 133 (578)
T ss_pred cccccc
Confidence 655444
No 24
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.35 E-value=0.0018 Score=60.73 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=59.2
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHH--hCCCCcccEEECCce
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLI--LGENELKQFDIHGKD 274 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~v--L~g~~~~kf~Ingk~ 274 (295)
+-.|+|| ++.+ .||+||++||.. || -|++|.|...++..+||.|.|+.++.++.. |+|. .|.|+.
T Consensus 4 ~g~TV~V---~NLS~~tTE~dLrefFS~-~G--~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa-----~l~d~~ 72 (243)
T PLN03121 4 GGYTAEV---TNLSPKATEKDVYDFFSH-CG--AIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGA-----TIVDQR 72 (243)
T ss_pred CceEEEE---ecCCCCCCHHHHHHHHHh-cC--CeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCC-----eeCCce
Confidence 4468888 7777 999999999995 99 888999988677788999999998886554 5565 688999
Q ss_pred eEEEecc
Q 045525 275 IRVRRFV 281 (295)
Q Consensus 275 vWarky~ 281 (295)
|.+-.+.
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 9887743
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.29 E-value=0.001 Score=66.60 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=60.2
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEE
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWa 277 (295)
.|++|| ++.| ++|+||+++|.. || . |+++.|-. ...||+|-|.+++..+.+++........|+|+.+++
T Consensus 2 s~vv~V---~nLp~~~te~~L~~~f~~-fG-~-V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHV---RNLPQDVVEADLVEALIP-FG-P-VSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEE---cCCCCCCCHHHHHHHHHh-cC-C-eeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 478988 9999 999999999995 99 5 44554422 347999999999999998875334457899999999
Q ss_pred EecccCC
Q 045525 278 RRFVPKP 284 (295)
Q Consensus 278 rky~pk~ 284 (295)
+...++.
T Consensus 73 ~~s~~~~ 79 (481)
T TIGR01649 73 NYSTSQE 79 (481)
T ss_pred EecCCcc
Confidence 8776543
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.18 E-value=0.0031 Score=62.34 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=57.2
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhh-----------CCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRY-----------GEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~y-----------G~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
......|+||| +|.| +|++||++||.. | | ..|..+.+ +...+||+|.|.+++....+|.
T Consensus 170 ~~~~~~r~lyV---gnLp~~~t~~~l~~~F~~-~~~~~~~~~~~~~-~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~ 241 (509)
T TIGR01642 170 QATRQARRLYV---GGIPPEFVEEAVVDFFND-LMIATGYHKAEDG-KHVSSVNI---NKEKNFAFLEFRTVEEATFAMA 241 (509)
T ss_pred cCCccccEEEE---eCCCCCCCHHHHHHHHHH-HHHhcCCCCCCCC-CceEEEEE---CCCCCEEEEEeCCHHHHhhhhc
Confidence 45667899999 9999 999999999996 4 2 34555655 5668899999999999888874
Q ss_pred CCCcccEEECCceeEEEe
Q 045525 262 ENELKQFDIHGKDIRVRR 279 (295)
Q Consensus 262 g~~~~kf~Ingk~vWark 279 (295)
.-.+.++|+.+=+++
T Consensus 242 ---l~g~~~~g~~l~v~r 256 (509)
T TIGR01642 242 ---LDSIIYSNVFLKIRR 256 (509)
T ss_pred ---CCCeEeeCceeEecC
Confidence 223567888876653
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.10 E-value=0.0024 Score=66.67 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=57.7
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
..+++|| +|.| ++|++|+++|.+ || ++.+-.+|.+ +++..+||+|.|.+.+..+..+...+. ..|+|+.
T Consensus 106 ~~~rLfV---GnLp~~~tEe~Lr~lF~~-fG-~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~ 178 (612)
T TIGR01645 106 IMCRVYV---GSISFELREDTIRRAFDP-FG-PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRN 178 (612)
T ss_pred CCCEEEE---cCCCCCCCHHHHHHHHHc-cC-CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecce
Confidence 4467888 8988 999999999995 99 6544434444 789999999999999999998764322 3678888
Q ss_pred eEEEe
Q 045525 275 IRVRR 279 (295)
Q Consensus 275 vWark 279 (295)
+-+++
T Consensus 179 IkV~r 183 (612)
T TIGR01645 179 IKVGR 183 (612)
T ss_pred eeecc
Confidence 77764
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=96.89 E-value=0.004 Score=64.70 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEe-ec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKM-GC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M-~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
+.+.++||| +|.| ++++||.+.|.+ ++ .+++.+.+ .. .+....||+|.|++++.....+..-...++.|
T Consensus 135 S~~~~rLFV---gNLP~~~TeeeL~eeFsk-v~-egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l 209 (578)
T TIGR01648 135 SVDNCRLFV---GGIPKNKKREEILEEFSK-VT-EGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL 209 (578)
T ss_pred cccCceeEe---ecCCcchhhHHHHHHhhc-cc-CCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence 456789999 9999 999999999985 77 44444444 22 45678999999999988776665433445678
Q ss_pred CCceeEEEecccCCCC
Q 045525 271 HGKDIRVRRFVPKPAP 286 (295)
Q Consensus 271 ngk~vWarky~pk~~~ 286 (295)
.|+.+-+....|+...
T Consensus 210 ~Gr~I~VdwA~p~~~~ 225 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEV 225 (578)
T ss_pred cCceEEEEeecccccc
Confidence 8999988777776543
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.83 E-value=0.0017 Score=65.20 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=72.7
Q ss_pred ccccccccCccccccchhhhcccCCCCCCCCCCCCCCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee
Q 045525 160 NHQVQVLEPAAELLQPQVNILRQQGNGNHLANGQANDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG 237 (295)
Q Consensus 160 ~~~~~~~p~~~~p~~~~~~il~~~~~~~~~~~~~~~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~ 237 (295)
.+|...+||..||. .-- +.+.+..=-.|+|.+|| +-.+ .||.||++-|.+ || .||+++|-
T Consensus 96 lhn~ktlpG~~~pv-------qvk-----~Ad~E~er~~~e~KLFv---g~lsK~~te~evr~iFs~-fG--~Ied~~il 157 (510)
T KOG0144|consen 96 LHNQKTLPGMHHPV-------QVK-----YADGERERIVEERKLFV---GMLSKQCTENEVREIFSR-FG--HIEDCYIL 157 (510)
T ss_pred hhcccccCCCCcce-------eec-----ccchhhhccccchhhhh---hhccccccHHHHHHHHHh-hC--ccchhhhe
Confidence 55667888887772 110 11111111267899998 5555 899999999995 99 89999887
Q ss_pred c--cCCCCceEEEEecCHHHHHH---HhCCCCcccEEECCc--eeEEEecccCCCCC
Q 045525 238 C--CRDQSLYARVIVRSPAYITL---ILGENELKQFDIHGK--DIRVRRFVPKPAPV 287 (295)
Q Consensus 238 ~--~~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ingk--~vWarky~pk~~~~ 287 (295)
+ -+.++++|+|.|.+.++.-. -|+|.. ++.|- .+=+|=..|||.+.
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~----tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ----TMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccce----eeccCCCceEEEecccCCCch
Confidence 7 68889999999999887333 344533 55553 45666677877764
No 30
>smart00361 RRM_1 RNA recognition motif.
Probab=96.39 E-value=0.012 Score=43.87 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=41.6
Q ss_pred HHHHHHHHH---HhhCCCceeE--EEeec-c--CCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEE
Q 045525 215 RAELFEFFI---RRYGEDCVED--IKMGC-C--RDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 215 e~Ei~efF~---~~yG~~cve~--v~M~~-~--~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWa 277 (295)
+++|+++|+ .+|| .+..- |.|.+ + +++.+||+|.|.+++.....+..-+. -.++|+.+=+
T Consensus 2 ~~~l~~~~~~~~~~fG-~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g--~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFG-EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG--RYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcC-CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC--CEECCEEEEe
Confidence 688999998 2499 44333 35555 4 88999999999999987776653211 1677776643
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=95.85 E-value=0.057 Score=54.22 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=54.5
Q ss_pred CCceEEEEccCCcc---cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 199 TDRTLFATFSKGHP---ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 199 d~Rt~FvTFS~G~P---vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
...+||| +|.| +++++|++.|. .|| ++..-..|.+ ..+||+|.|.+++....+|..-+. ..|.|+.+
T Consensus 274 ~~~~l~v---~nL~~~~vt~~~L~~lF~-~yG-~V~~vki~~~---~~g~afV~f~~~~~A~~Ai~~lng--~~l~g~~l 343 (481)
T TIGR01649 274 PGSVLMV---SGLHQEKVNCDRLFNLFC-VYG-NVERVKFMKN---KKETALIEMADPYQAQLALTHLNG--VKLFGKPL 343 (481)
T ss_pred CCCEEEE---eCCCCCCCCHHHHHHHHH-hcC-CeEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCC--CEECCceE
Confidence 5578998 8887 79999999999 599 5554434432 368999999999998888764322 26799999
Q ss_pred EEEec
Q 045525 276 RVRRF 280 (295)
Q Consensus 276 Warky 280 (295)
-+...
T Consensus 344 ~v~~s 348 (481)
T TIGR01649 344 RVCPS 348 (481)
T ss_pred EEEEc
Confidence 87654
No 32
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=95.34 E-value=0.055 Score=54.47 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=63.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEE
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDI 270 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~I 270 (295)
.-++..++|| +..| .+.++++++|. +|| -|+..-|+- .+..+.||+|.|.+.+.+..++.-. ++.|
T Consensus 284 ~~~~~~~i~V---~nlP~da~~~~l~~~Fk-~FG--~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~i 354 (419)
T KOG0116|consen 284 PRADGLGIFV---KNLPPDATPAELEEVFK-QFG--PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEI 354 (419)
T ss_pred eeecccceEe---ecCCCCCCHHHHHHHHh-hcc--cccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---cccc
Confidence 3445566666 9999 99999999999 599 444444444 4777799999999999998888865 8999
Q ss_pred CCceeEEEecccCCCC
Q 045525 271 HGKDIRVRRFVPKPAP 286 (295)
Q Consensus 271 ngk~vWarky~pk~~~ 286 (295)
+|+.+-+..-.|....
T Consensus 355 g~~kl~Veek~~~~~g 370 (419)
T KOG0116|consen 355 GGRKLNVEEKRPGFRG 370 (419)
T ss_pred CCeeEEEEeccccccc
Confidence 9999988776654433
No 33
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.25 E-value=0.032 Score=59.71 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=62.6
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee--
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI-- 275 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v-- 275 (295)
.||||| +|.| ++|+|+...|++ || -|++|.| .-.+.+|+|+..+-.....+|..-. +..+++|-|
T Consensus 421 SrTLwv---G~i~k~v~e~dL~~~fee-fG--eiqSi~l---i~~R~cAfI~M~~RqdA~kalqkl~--n~kv~~k~Iki 489 (894)
T KOG0132|consen 421 SRTLWV---GGIPKNVTEQDLANLFEE-FG--EIQSIIL---IPPRGCAFIKMVRRQDAEKALQKLS--NVKVADKTIKI 489 (894)
T ss_pred eeeeee---ccccchhhHHHHHHHHHh-cc--cceeEee---ccCCceeEEEEeehhHHHHHHHHHh--cccccceeeEE
Confidence 589999 9999 999999999996 99 8999999 7789999999988888777777533 556777777
Q ss_pred -EEEecccCC
Q 045525 276 -RVRRFVPKP 284 (295)
Q Consensus 276 -Warky~pk~ 284 (295)
||.-+=||.
T Consensus 490 ~Wa~g~G~ks 499 (894)
T KOG0132|consen 490 AWAVGKGPKS 499 (894)
T ss_pred eeeccCCcch
Confidence 998887775
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=95.17 E-value=0.043 Score=55.50 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=57.1
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
.|-=.||| +-.| -||.|++++|+ +|| .+-|-..+.| ++++.++++|.|.+.+.-++..+--+ .++++-|-
T Consensus 32 ~~~vKlfV---gqIprt~sE~dlr~lFe-~yg-~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alh-n~ktlpG~ 105 (510)
T KOG0144|consen 32 GSAVKLFV---GQIPRTASEKDLRELFE-KYG-NVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALH-NQKTLPGM 105 (510)
T ss_pred chhhhhee---ccCCccccHHHHHHHHH-HhC-ceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhh-cccccCCC
Confidence 44456666 8888 89999999999 599 7777777777 99999999999999999888887543 34456555
Q ss_pred ee
Q 045525 274 DI 275 (295)
Q Consensus 274 ~v 275 (295)
|-
T Consensus 106 ~~ 107 (510)
T KOG0144|consen 106 HH 107 (510)
T ss_pred Cc
Confidence 43
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=94.72 E-value=0.095 Score=54.12 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=48.8
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCH--HHHHHH---hCCCCcccEEECC
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSP--AYITLI---LGENELKQFDIHG 272 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~--~~v~~v---L~g~~~~kf~Ing 272 (295)
-+||| +|.+ ++++||+..|.+ || -|.+|.|-+ +| ++||+|-|.++ +..+.. |+|. ...|
T Consensus 11 MRIYV---GNLSydVTEDDLravFSe-FG--sVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGA-----EWKG 77 (759)
T PLN03213 11 VRLHV---GGLGESVGRDDLLKIFSP-MG--TVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGC-----VWKG 77 (759)
T ss_pred eEEEE---eCCCCCCCHHHHHHHHHh-cC--CeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCC-----eecC
Confidence 35666 9877 999999999995 99 466666555 66 99999999987 444444 4453 3566
Q ss_pred ceeEEEeccc
Q 045525 273 KDIRVRRFVP 282 (295)
Q Consensus 273 k~vWarky~p 282 (295)
+.+-+.+..|
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 6665544433
No 36
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=94.69 E-value=0.14 Score=53.30 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=62.2
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCC---Ccc-cEEECC
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGEN---ELK-QFDIHG 272 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~---~~~-kf~Ing 272 (295)
+|+|| |..| .||+||.+.|+ +|| ..--.+.+-+ ++++-+-|+|-|+.+.+-..-|.+. ... -+.+.|
T Consensus 293 ~tVFv---RNL~fD~tEEel~~~fs-kFG-~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 293 KTVFV---RNLPFDTTEEELKEHFS-KFG-EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred ceEEE---ecCCccccHHHHHHHHH-hhc-cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 99999 9999 99999999999 599 4444444444 9999999999999998855444432 122 289999
Q ss_pred ceeEEEecccCCC
Q 045525 273 KDIRVRRFVPKPA 285 (295)
Q Consensus 273 k~vWarky~pk~~ 285 (295)
+++=+-..++|+.
T Consensus 368 R~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 368 RLLKVTLAVTRKE 380 (678)
T ss_pred cEEeeeeccchHH
Confidence 9998888887753
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=94.40 E-value=0.092 Score=53.35 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=51.5
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCcee-EEEeec-cCCCCceEEEEecCHHHHHH---HhCCCCcccEEECC
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVE-DIKMGC-CRDQSLYARVIVRSPAYITL---ILGENELKQFDIHG 272 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve-~v~M~~-~~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ing 272 (295)
-=-+|| ++.| +.|||+.-+|++ =| ..-| +++|.. .|..++||+|+|.+.+...+ .||... |+ .|
T Consensus 83 G~EVfv---GkIPrD~~EdeLvplfEk-iG-~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E---ir-~G 153 (506)
T KOG0117|consen 83 GCEVFV---GKIPRDVFEDELVPLFEK-IG-KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE---IR-PG 153 (506)
T ss_pred CceEEe---cCCCccccchhhHHHHHh-cc-ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc---cc-CC
Confidence 335777 9999 999999999995 89 5554 666664 99999999999999877444 445432 11 77
Q ss_pred ceeEE
Q 045525 273 KDIRV 277 (295)
Q Consensus 273 k~vWa 277 (295)
|++=+
T Consensus 154 K~igv 158 (506)
T KOG0117|consen 154 KLLGV 158 (506)
T ss_pred CEeEE
Confidence 87744
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=93.90 E-value=0.17 Score=35.62 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEE
Q 045525 218 LFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 218 i~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWa 277 (295)
++++|. +|| -|+.+.|.+.+ +.+|.|.|.+.+.....+..-+.. .++|+.+-+
T Consensus 1 L~~~f~-~fG--~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~--~~~g~~l~V 53 (56)
T PF13893_consen 1 LYKLFS-KFG--EVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGR--QFNGRPLKV 53 (56)
T ss_dssp HHHHHT-TTS---EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTS--EETTEEEEE
T ss_pred ChHHhC-Ccc--cEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEE
Confidence 567888 599 57777775522 799999999999866665421112 379987744
No 39
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=93.83 E-value=0.3 Score=46.20 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=62.5
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhC-CCceeEEEeeccCCC--CceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYG-EDCVEDIKMGCCRDQ--SLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG-~~cve~v~M~~~~~q--plfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
+..-||+|| -|.| |.--||...|.+.-| |.| .+.|-..+.| .-+|+++|.|.+....+++--++++|.-.
T Consensus 31 ~~~VRTLFV---SGLP~DvKpREiynLFR~f~GYEgs--lLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 31 PGAVRTLFV---SGLPNDVKPREIYNLFRRFHGYEGS--LLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred ccccceeee---ccCCcccCHHHHHHHhccCCCccce--eeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 444799999 8999 899999999999888 444 3444332222 37899999999886666554445666544
Q ss_pred C---ceeEEEecccCCCCCCCC
Q 045525 272 G---KDIRVRRFVPKPAPVASP 290 (295)
Q Consensus 272 g---k~vWarky~pk~~~~~~~ 290 (295)
- -|+..-|--+|.+++..+
T Consensus 106 ~~stLhiElAKSNtK~kr~k~s 127 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTKRKRRKGS 127 (284)
T ss_pred cCceeEeeehhcCcccccCCCC
Confidence 3 367777887777766433
No 40
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.19 E-value=0.41 Score=47.43 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=50.8
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEEE
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRVR 278 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWar 278 (295)
+|||| +|.- |+|.+|+++|. +|| -|+.|.+.- +++ .|+|.|.+-.....+.... -.++.|||+.+-++
T Consensus 229 ~tLyI---g~l~d~v~e~dIrdhFy-qyG--eirsi~~~~-~~~--CAFv~ftTR~aAE~Aae~~-~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 229 KTLYI---GGLNDEVLEQDIRDHFY-QYG--EIRSIRILP-RKG--CAFVTFTTREAAEKAAEKS-FNKLVINGFRLKIK 298 (377)
T ss_pred eEEEe---cccccchhHHHHHHHHh-hcC--CeeeEEeec-ccc--cceeeehhhHHHHHHHHhh-cceeeecceEEEEE
Confidence 56777 8774 99999999999 599 667766643 333 8999999988876666532 33999999877444
No 41
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=92.87 E-value=0.37 Score=49.27 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=67.4
Q ss_pred CCCCCCCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeE--EEeeccCCCCceEEEEecCHHHHHHHhCCCCc
Q 045525 190 ANGQANDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVED--IKMGCCRDQSLYARVIVRSPAYITLILGENEL 265 (295)
Q Consensus 190 ~~~~~~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~--v~M~~~~~qplfarivf~s~~~v~~vL~g~~~ 265 (295)
..+...++..+|++||| ..| +.=+++++.|.++-| -||- +.|.+.+.++..|.|-|+.++-+...|.- .
T Consensus 34 gs~~gn~~~r~R~vfIt---NIpyd~rWqdLKdLvrekvG--ev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~--l 106 (608)
T KOG4212|consen 34 GSQGGNVAARDRSVFIT---NIPYDYRWQDLKDLVREKVG--EVEYVELLFDESGKARGCAVVEFKDPENVQKALEK--L 106 (608)
T ss_pred cCCCCCcccccceEEEe---cCcchhhhHhHHHHHHHhcC--ceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHH--h
Confidence 34456789999999995 666 777899999999999 3333 33434899999999999999999998876 7
Q ss_pred ccEEECCceeEEEe
Q 045525 266 KQFDIHGKDIRVRR 279 (295)
Q Consensus 266 ~kf~Ingk~vWark 279 (295)
.|+.+||+.+=++.
T Consensus 107 nk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 107 NKYEVNGRELVVKE 120 (608)
T ss_pred hhccccCceEEEec
Confidence 78999999987764
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=92.12 E-value=0.33 Score=49.18 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=51.6
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHH---HhCCCCcccEEECCc
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITL---ILGENELKQFDIHGK 273 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ingk 273 (295)
+++|| ++.| ++|++|.+.|.+ .| .++-.=.+.| +|+.++||++-|.++++... .|+|. .++|+
T Consensus 19 ~~v~v---gnip~~~se~~l~~~~~~-~g-~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~-----~~~gr 88 (435)
T KOG0108|consen 19 SSVFV---GNIPYEGSEEQLLSIFSG-VG-PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA-----EFNGR 88 (435)
T ss_pred cceEe---cCCCCcccHHHHHHHHhc-cC-ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc-----ccCCc
Confidence 55655 9999 999999999995 88 6766666666 99999999999999887554 45553 46676
Q ss_pred eeE
Q 045525 274 DIR 276 (295)
Q Consensus 274 ~vW 276 (295)
.+-
T Consensus 89 ~l~ 91 (435)
T KOG0108|consen 89 KLR 91 (435)
T ss_pred eEE
Confidence 663
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=91.54 E-value=0.38 Score=45.03 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=50.2
Q ss_pred cccCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE--EEecccC
Q 045525 211 HPISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR--VRRFVPK 283 (295)
Q Consensus 211 ~Pvse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW--arky~pk 283 (295)
|--|.++++--|+ +|| -|-+|+|-. +.++.+||+|-|+....++..|.-.+.+ .++|+.+- +-+|-+.
T Consensus 23 yRTspd~LrrvFe-kYG--~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~--~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 23 YRTSPDDLRRVFE-KYG--RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA--VLDGRELRVQMARYGRP 95 (256)
T ss_pred ccCCHHHHHHHHH-HhC--cccceecccccccccccceeEEEeeecchHHHHHHhhcce--eeccceeeehhhhcCCC
Confidence 3467899999999 599 677788877 9999999999998777666665543333 67888873 3355544
No 44
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.33 E-value=0.45 Score=49.02 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-ccCCCCceEEEEecCHHHHHHHhCCCCcccE--EECC
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-CCRDQSLYARVIVRSPAYITLILGENELKQF--DIHG 272 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~~~~qplfarivf~s~~~v~~vL~g~~~~kf--~Ing 272 (295)
+--||+|| +|.| ++.+|+-..|.+-||.=|-..|.+. +-+=+-+=|||+|.....--..+... =+++ .=.-
T Consensus 368 DprrTVFV---Ggvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar-Fvql~h~d~~ 443 (520)
T KOG0129|consen 368 DPRRTVFV---GGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR-FVQLDHTDID 443 (520)
T ss_pred CccceEEe---cCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh-eEEEeccccc
Confidence 44689999 9999 9999999999999995566677775 34555666999999988744444431 1111 1123
Q ss_pred ceeEEEecc
Q 045525 273 KDIRVRRFV 281 (295)
Q Consensus 273 k~vWarky~ 281 (295)
|.|.++-|+
T Consensus 444 KRVEIkPYv 452 (520)
T KOG0129|consen 444 KRVEIKPYV 452 (520)
T ss_pred eeeeeccee
Confidence 567777666
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=90.96 E-value=0.47 Score=43.47 Aligned_cols=73 Identities=25% Similarity=0.382 Sum_probs=60.9
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHH---HhCCCCcccEE
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITL---ILGENELKQFD 269 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~---vL~g~~~~kf~ 269 (295)
..+-|+|+ +|.+ +||+-+.|.|.+ -| -|.++.|-+ ++.+.+||++-|.+++..|- ||| ++.
T Consensus 7 nqd~tiyv---gnld~kvs~~~l~EL~iq-ag--pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln-----~Vk 75 (203)
T KOG0131|consen 7 NQDATLYV---GNLDEKVSEELLYELFIQ-AG--PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN-----MVK 75 (203)
T ss_pred CCCceEEE---ecCCHHHHHHHHHHHHHh-cC--ceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH-----HHH
Confidence 34569999 8888 999999999995 77 567899988 77799999999999998764 555 346
Q ss_pred ECCceeEEEecc
Q 045525 270 IHGKDIRVRRFV 281 (295)
Q Consensus 270 Ingk~vWarky~ 281 (295)
+-||.+-++|..
T Consensus 76 LYgrpIrv~kas 87 (203)
T KOG0131|consen 76 LYGRPIRVNKAS 87 (203)
T ss_pred hcCceeEEEecc
Confidence 789999999887
No 46
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=90.33 E-value=1.2 Score=43.99 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=58.0
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHH---hCCCCcccEE
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLI---LGENELKQFD 269 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~v---L~g~~~~kf~ 269 (295)
.-+...|-|.| -..| .-+.|++.-|. +|| .+++.-++=.-.-+-+||+|+|.+.+.-|+. |.|. .
T Consensus 91 ~s~~~pkRLhV---SNIPFrFRdpDL~aMF~-kfG-~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt-----~ 160 (376)
T KOG0125|consen 91 SSKDTPKRLHV---SNIPFRFRDPDLRAMFE-KFG-KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGT-----V 160 (376)
T ss_pred CCCCCCceeEe---ecCCccccCccHHHHHH-hhC-ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcc-----e
Confidence 34556678888 6777 78999999999 599 4433322322344679999999999997775 5564 6
Q ss_pred ECCceeEEEecccC
Q 045525 270 IHGKDIRVRRFVPK 283 (295)
Q Consensus 270 Ingk~vWarky~pk 283 (295)
|.||.|.++..-++
T Consensus 161 VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 161 VEGRKIEVNNATAR 174 (376)
T ss_pred eeceEEEEeccchh
Confidence 99999999887654
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=89.24 E-value=1.1 Score=41.56 Aligned_cols=72 Identities=21% Similarity=0.395 Sum_probs=57.0
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI 275 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v 275 (295)
..++++|| +..| |-|-||.+.|- ||| -|..|.......+|-||+|-|..+--.+..+-|.+ -+..+|-++
T Consensus 4 r~~~~iyv---GNLP~diRekeieDlFy-Kyg--~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRd--GYdydg~rL 75 (241)
T KOG0105|consen 4 RNSRRIYV---GNLPGDIREKEIEDLFY-KYG--RIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRD--GYDYDGCRL 75 (241)
T ss_pred cccceEEe---cCCCcchhhccHHHHHh-hhc--ceEEEEeccCCCCCCeeEEEecCccchhhhhhccc--ccccCcceE
Confidence 46788988 8999 99999999999 599 66667776678889999999999988888887744 344566655
Q ss_pred EE
Q 045525 276 RV 277 (295)
Q Consensus 276 Wa 277 (295)
-+
T Consensus 76 RV 77 (241)
T KOG0105|consen 76 RV 77 (241)
T ss_pred EE
Confidence 33
No 48
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=87.90 E-value=1.2 Score=40.73 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=45.3
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHH---HHHHhCCCC
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAY---ITLILGENE 264 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~---v~~vL~g~~ 264 (295)
+..+|| ++.+ .++.||..-|. +|| -+-.|-| .-.+|+||+|-|..+-- .-+.|+|..
T Consensus 10 ~~kVYV---GnL~~~a~k~eLE~~F~-~yG--~lrsvWv--ArnPPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 10 NTKVYV---GNLGSRATKRELERAFS-KYG--PLRSVWV--ARNPPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred CceEEe---ccCCCCcchHHHHHHHH-hcC--cceeEEE--eecCCCceEEeccCcccHHHHHhhcCCcc
Confidence 456778 8777 99999999999 599 6777777 55899999999987644 446788864
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=87.37 E-value=2.3 Score=39.74 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=45.4
Q ss_pred ceEEEEccCCcc--cCHHHHHH----HHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 201 RTLFATFSKGHP--ISRAELFE----FFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~e----fF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
+|+|| +.++ |..+|++. .|++ || -|-.|.+-++...++=|+|||+++++-...|.
T Consensus 10 ~TlYI---nnLnekI~~~elkrsL~~LFsq-fG--~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r 70 (221)
T KOG4206|consen 10 GTLYI---NNLNEKIKKDELKRSLYLLFSQ-FG--KILDISAFKTPKMRGQAFVVFKETEAASAALR 70 (221)
T ss_pred ceEee---hhccccccHHHHHHHHHHHHHh-hC--CeEEEEecCCCCccCceEEEecChhHHHHHHH
Confidence 39999 8776 99999988 9995 99 67778888888899999999999877444443
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=86.75 E-value=0.99 Score=47.26 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=58.1
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeE
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIR 276 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vW 276 (295)
-|+|| ++.| ++.+++.+||.. .| ++--.+.+-. .++.++||+|.|--++-+.+.|.-...- ..+|+.+-
T Consensus 6 ~TlfV---~~lp~~~~~~qL~e~FS~-vG-Pik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~--kf~Gr~l~ 78 (678)
T KOG0127|consen 6 ATLFV---SRLPFSSTGEQLEEFFSY-VG-PIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQS--KFEGRILN 78 (678)
T ss_pred ceEEE---ecCCCccchhHHHHhhhc-cc-CcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcC--cccceecc
Confidence 69999 6666 999999999995 88 6655566655 5789999999999999999999853322 35677666
Q ss_pred EEecccCC
Q 045525 277 VRRFVPKP 284 (295)
Q Consensus 277 arky~pk~ 284 (295)
+....+|.
T Consensus 79 v~~A~~R~ 86 (678)
T KOG0127|consen 79 VDPAKKRA 86 (678)
T ss_pred cccccccc
Confidence 55555443
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=86.56 E-value=4.5 Score=34.40 Aligned_cols=55 Identities=22% Similarity=0.473 Sum_probs=46.3
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHH
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAY 255 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~ 255 (295)
..|+-.|-+|| +..| ||.+|+.|.|-+ || -|..|.+..+.+-++=|+||.....-
T Consensus 13 lppevnriLyi---rNLp~~ITseemydlFGk-yg--~IrQIRiG~~k~TrGTAFVVYedi~d 69 (124)
T KOG0114|consen 13 LPPEVNRILYI---RNLPFKITSEEMYDLFGK-YG--TIRQIRIGNTKETRGTAFVVYEDIFD 69 (124)
T ss_pred CChhhheeEEE---ecCCccccHHHHHHHhhc-cc--ceEEEEecCccCcCceEEEEehHhhh
Confidence 45788899999 9999 999999999994 99 77778777777888999999866554
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=86.23 E-value=2 Score=43.34 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=63.7
Q ss_pred CCCCCceEEEEcc-CCcc-cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 196 DADTDRTLFATFS-KGHP-ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 196 v~~d~Rt~FvTFS-~G~P-vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
|.+|-|..|-.+. -=+| +||+||+.-|+ .|| +.+--..-+. ++...+||+|-|...+..++...+ -..|.++
T Consensus 203 vqeeAk~fnRiYVaSvHpDLSe~DiKSVFE-AFG-~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias--MNlFDLG 278 (544)
T KOG0124|consen 203 VQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFG-EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS--MNLFDLG 278 (544)
T ss_pred HHHHHHhhheEEeeecCCCccHHHHHHHHH-hhc-ceeeEEeeccCCCCCccceeeEEeccccchHHHhhh--cchhhcc
Confidence 4555555443333 3345 99999999999 599 6665555555 577799999999999999999999 4589999
Q ss_pred CceeEEEecc
Q 045525 272 GKDIRVRRFV 281 (295)
Q Consensus 272 gk~vWarky~ 281 (295)
|.-+.+-|-+
T Consensus 279 GQyLRVGk~v 288 (544)
T KOG0124|consen 279 GQYLRVGKCV 288 (544)
T ss_pred cceEeccccc
Confidence 9998888877
No 53
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=84.55 E-value=3 Score=40.46 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCcee---EEE
Q 045525 213 ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDI---RVR 278 (295)
Q Consensus 213 vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~v---War 278 (295)
|+-+.||+=|+ .|| ++-|.=.+.| ++.+-+||+|-|-..+-.+..+.+.... +|.+|.| ||-
T Consensus 74 I~~e~lr~aF~-pFG-evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IRTNWAT 140 (321)
T KOG0148|consen 74 IDNEKLREAFA-PFG-EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIRTNWAT 140 (321)
T ss_pred cchHHHHHHhc-ccc-ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceeeccccc
Confidence 89999999999 599 8888888888 8999999999998877766554432211 8888888 664
No 54
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=84.52 E-value=0.37 Score=44.31 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=51.6
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
|.-=+|| +|.| +||.+|.--|.+ || ..|.-..|.+ +|.+-+||++....+-. -||.=.+-.-+.|.|+-
T Consensus 34 dsA~Iyi---ggl~~~LtEgDil~VFSq-yG-e~vdinLiRDk~TGKSKGFaFLcYEDQRS--TILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 34 DSAYIYI---GGLPYELTEGDILCVFSQ-YG-EIVDINLIRDKKTGKSKGFAFLCYEDQRS--TILAVDNLNGIKILGRT 106 (219)
T ss_pred cceEEEE---CCCcccccCCcEEEEeec-cC-ceEEEEEEecCCCCcccceEEEEecCccc--eEEEEeccCCceeccee
Confidence 3345666 9999 999999999995 99 7888888888 99999999999876543 23332222334566665
Q ss_pred eE
Q 045525 275 IR 276 (295)
Q Consensus 275 vW 276 (295)
|-
T Consensus 107 ir 108 (219)
T KOG0126|consen 107 IR 108 (219)
T ss_pred EE
Confidence 53
No 55
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=84.04 E-value=5 Score=39.73 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=56.9
Q ss_pred eEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHH---HhCCCCcccEEECCceeE
Q 045525 202 TLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITL---ILGENELKQFDIHGKDIR 276 (295)
Q Consensus 202 t~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ingk~vW 276 (295)
.+|| +..+ ++-.+++++|.. || +.+---.|-+.+-..+| +|-|.+++.-+. -|||. ..+||.+.
T Consensus 78 ~~~i---~nl~~~~~~~~~~d~f~~-~g-~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~-----ll~~kki~ 146 (369)
T KOG0123|consen 78 LVFI---KNLDESIDNKSLYDTFSE-FG-NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGM-----LLNGKKIY 146 (369)
T ss_pred eeee---cCCCcccCcHHHHHHHHh-hc-CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCc-----ccCCCeeE
Confidence 3666 8777 999999999995 99 66655555552337777 999999988444 45564 68999999
Q ss_pred EEecccCCCCCC
Q 045525 277 VRRFVPKPAPVA 288 (295)
Q Consensus 277 arky~pk~~~~~ 288 (295)
+=.+.+|.-+.+
T Consensus 147 vg~~~~~~er~~ 158 (369)
T KOG0123|consen 147 VGLFERKEEREA 158 (369)
T ss_pred Eeeccchhhhcc
Confidence 998888766543
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=83.94 E-value=1.8 Score=41.29 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=43.2
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhC
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~ 261 (295)
|.-|+=| -..+ .+|+|++|.|. .|| -|-++++-. +|...+||+|.|.|.+-..+.++
T Consensus 188 D~~tvRv---tNLsed~~E~dL~eLf~-~fg--~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~ 249 (270)
T KOG0122|consen 188 DEATVRV---TNLSEDMREDDLEELFR-PFG--PITRVYLARDKETGLSKGFAFVTFESRDDAARAIA 249 (270)
T ss_pred ccceeEE---ecCccccChhHHHHHhh-ccC--ccceeEEEEccccCcccceEEEEEecHHHHHHHHH
Confidence 4445545 2444 78999999999 599 677777655 99999999999999877555443
No 57
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=83.05 E-value=3.6 Score=42.53 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=56.1
Q ss_pred ceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCC-------CcccEEE
Q 045525 201 RTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGEN-------ELKQFDI 270 (295)
Q Consensus 201 Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~-------~~~kf~I 270 (295)
.+.|+.=-+|.| -|++||.+||.. --||++..-+ .+++.+=|.|.|.|++-+...|.-. =..-|++
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~----~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSN----CGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhc----CceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 355666669999 899999999995 4588888877 6999999999999999999888632 2334667
Q ss_pred CCcee
Q 045525 271 HGKDI 275 (295)
Q Consensus 271 ngk~v 275 (295)
+++.+
T Consensus 84 ~~~e~ 88 (510)
T KOG4211|consen 84 GGAEA 88 (510)
T ss_pred CCccc
Confidence 77665
No 58
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=81.08 E-value=6 Score=38.47 Aligned_cols=69 Identities=10% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
-++|+-|+|+ +|.+ ++||++++.|.. || + |..|.+= ..-+|++|=|.+.+...+.+-..+ -=.|+|.
T Consensus 160 ssp~NtsVY~---G~I~~~lte~~mr~~Fs~-fG-~-I~EVRvF---k~qGYaFVrF~tkEaAahAIv~mN--ntei~G~ 228 (321)
T KOG0148|consen 160 SSPDNTSVYV---GNIASGLTEDLMRQTFSP-FG-P-IQEVRVF---KDQGYAFVRFETKEAAAHAIVQMN--NTEIGGQ 228 (321)
T ss_pred CCCCCceEEe---CCcCccccHHHHHHhccc-CC-c-ceEEEEe---cccceEEEEecchhhHHHHHHHhc--CceeCce
Confidence 4678889999 9998 999999999995 99 4 4444442 235799999999887555443211 0167777
Q ss_pred ee
Q 045525 274 DI 275 (295)
Q Consensus 274 ~v 275 (295)
.|
T Consensus 229 ~V 230 (321)
T KOG0148|consen 229 LV 230 (321)
T ss_pred EE
Confidence 65
No 59
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=81.01 E-value=4 Score=42.33 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=49.9
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeecc-------CCC-C---ceEEEEecCHHHHHHHhCC----
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCC-------RDQ-S---LYARVIVRSPAYITLILGE---- 262 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~-------~~q-p---lfarivf~s~~~v~~vL~g---- 262 (295)
.|.+|+ +|.| |+|++|...|-+ || .| .++++ ..+ - +|.++||..|..|..+|.+
T Consensus 259 S~KVFv---GGlp~dise~~i~~~F~~-FG-s~----~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 259 SRKVFV---GGLPWDITEAQINASFGQ-FG-SV----KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred ccceee---cCCCccccHHHHHhhccc-cc-ce----EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 355555 9999 999999999995 99 44 34331 111 2 4999999999998888874
Q ss_pred CCcccE-----EECCceeEEEecccC
Q 045525 263 NELKQF-----DIHGKDIRVRRFVPK 283 (295)
Q Consensus 263 ~~~~kf-----~Ingk~vWarky~pk 283 (295)
..+..| +|.-|.|-+|-.++-
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~la 355 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLA 355 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEec
Confidence 344444 234455555554443
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=80.10 E-value=4.7 Score=35.42 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=45.1
Q ss_pred CCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHh
Q 045525 198 DTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLIL 260 (295)
Q Consensus 198 ~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL 260 (295)
...-|+|| +..- .+|++|.|.|.+ .| -|-+|+|.= ...+=+|++|.|-|.+.....|
T Consensus 34 r~S~tvyV---gNlSfyttEEqiyELFs~-cG--~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 34 RKSCTVYV---GNLSFYTTEEQIYELFSK-CG--DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred hhcceEEE---eeeeeeecHHHHHHHHHh-cc--chheeEeccccCCcCccceEEEEEecchhHHHHH
Confidence 34458888 5444 899999999995 99 788999975 7888999999999887755444
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=78.29 E-value=2.5 Score=41.14 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=47.3
Q ss_pred CCCCceEEEEccCCcccCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCC
Q 045525 197 ADTDRTLFATFSKGHPISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGE 262 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g 262 (295)
+.|||.+||--- +.--+||||+..|.- || .+|.+.+-+ -+.+-+.|+|-|.|.......+++
T Consensus 16 g~~drklfvgml-~kqq~e~dvrrlf~p-fG--~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 16 GGDDRKLFVGML-NKQQSEDDVRRLFQP-FG--NIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred Cccchhhhhhhh-cccccHHHHHHHhcc-cC--CcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 459999998211 334899999999995 99 666666666 577889999999998776665553
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=77.93 E-value=5.7 Score=36.99 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=39.7
Q ss_pred EccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHH
Q 045525 206 TFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAY 255 (295)
Q Consensus 206 TFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~ 255 (295)
+.++..| +.|.++..||.+ +| ..|-++.|-+ +|-+.+||+|=|.|++.
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q-~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eV 104 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQ-FG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEV 104 (214)
T ss_pred eeecccccchhHHHHhhhhhh-cC-CeeEEEEeecccccCCcCceEEEEeccHHH
Confidence 4446666 889999999996 65 5888888844 99999999999999876
No 63
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=72.74 E-value=6 Score=40.92 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=48.5
Q ss_pred CCcc--cCHHHHHHHHHHhhCCCceeE---EEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEE
Q 045525 209 KGHP--ISRAELFEFFIRRYGEDCVED---IKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 209 ~G~P--vse~Ei~efF~~~yG~~cve~---v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWa 277 (295)
||.| +||+||.+||.- =+.|-. ..|+..+++.+=|+|.|.|.+.++..|... +..|+.+=|.+
T Consensus 109 RGLPfscte~dI~~FFaG---L~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh---re~iGhRYIEv 176 (510)
T KOG4211|consen 109 RGLPFSCTEEDIVEFFAG---LEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH---RENIGHRYIEV 176 (510)
T ss_pred cCCCccCcHHHHHHHhcC---CcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH---HHhhccceEEe
Confidence 9999 999999999994 234444 345446778899999999999999999753 34677776654
No 64
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=72.54 E-value=2.5 Score=39.99 Aligned_cols=61 Identities=25% Similarity=0.326 Sum_probs=45.2
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHH---HHhCC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYIT---LILGE 262 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~---~vL~g 262 (295)
..+|.|||||| ...- |||+=+.|.|-. =| -|..|.+.+ -++|+ ||.|-|..|-.|. .++||
T Consensus 4 aaae~drtl~v---~n~~~~v~eelL~Elfiq-aG--PV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng 71 (267)
T KOG4454|consen 4 AAAEMDRTLLV---QNMYSGVSEELLSELFIQ-AG--PVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENG 71 (267)
T ss_pred CCcchhhHHHH---HhhhhhhhHHHHHHHhhc-cC--ceEEEeCCCCccCCCc-eeeeecccccchhhhhhhccc
Confidence 46889999998 4433 899999999995 66 455777777 34444 9999999876654 44555
No 65
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=71.87 E-value=17 Score=27.61 Aligned_cols=53 Identities=15% Similarity=0.304 Sum_probs=35.3
Q ss_pred eEEEEccCCcc-cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 202 TLFATFSKGHP-ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 202 t~FvTFS~G~P-vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
++.| +|.- +|-++|+.||...|++.- -..+|+-+..+ +-|||.++.+-.+.|.
T Consensus 7 avhi---rGvd~lsT~dI~~y~~~y~~~~~--~~~IEWIdDtS--cNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 7 AVHI---RGVDELSTDDIKAYFSEYFDEEG--PFRIEWIDDTS--CNVVFKDEETAARALV 60 (62)
T ss_pred eEEE---EcCCCCCHHHHHHHHHHhcccCC--CceEEEecCCc--EEEEECCHHHHHHHHH
Confidence 4555 6665 999999999997433111 22333333344 8999999999877764
No 66
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=69.73 E-value=3.3 Score=35.55 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=14.1
Q ss_pred cCHHHHHHHHHHhhC
Q 045525 213 ISRAELFEFFIRRYG 227 (295)
Q Consensus 213 vse~Ei~efF~~~yG 227 (295)
-|++||++||..+||
T Consensus 74 ~Sd~eI~~~~v~RYG 88 (126)
T TIGR03147 74 KSNQQIIDFMTARFG 88 (126)
T ss_pred CCHHHHHHHHHHhcC
Confidence 489999999999999
No 67
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.19 E-value=11 Score=36.02 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=42.9
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHH
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLI 259 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~v 259 (295)
..-+.||+|| +|.. |+|.=+..-|-- || |.. +|.|. + .++.++||+|.|.-.+-....
T Consensus 6 ~a~~KrtlYV---GGladeVtekvLhaAFIP-FG-DI~-dIqiPlDyesqkHRgFgFVefe~aEDAaaA 68 (298)
T KOG0111|consen 6 MANQKRTLYV---GGLADEVTEKVLHAAFIP-FG-DIK-DIQIPLDYESQKHRGFGFVEFEEAEDAAAA 68 (298)
T ss_pred ccccceeEEe---ccchHHHHHHHHHhcccc-cc-chh-hcccccchhcccccceeEEEeeccchhHHH
Confidence 3567899999 9987 888878777874 99 544 44443 3 788999999999865543333
No 68
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=67.36 E-value=6.5 Score=32.19 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=36.3
Q ss_pred EEcc-CCcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcc---cEEECCcee
Q 045525 205 ATFS-KGHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELK---QFDIHGKDI 275 (295)
Q Consensus 205 vTFS-~G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~---kf~Ingk~v 275 (295)
|-|+ -+-|+++++|++.|.+ || .|.-|.+++ ...-|.|=|++++....++..-... ++.|+|..+
T Consensus 4 l~~~g~~~~~~re~iK~~f~~-~g--~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~ 72 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQ-FG--EVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEV 72 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-S-S----EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSE
T ss_pred EEEecCCCCcCHHHHHHHHHh-cC--CcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceE
Confidence 5566 4778999999999996 99 888888865 3446999999997655555533333 566776654
No 69
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=66.86 E-value=8.5 Score=37.43 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=49.2
Q ss_pred CCCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhC
Q 045525 195 NDADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~ 261 (295)
...-.+--+|| -|.| +|..|+...|.. || ..|.+=+..+ ++.+++-|+|-|+.-...++.+-
T Consensus 122 s~~Ik~aNLYv---SGlPktMtqkelE~iFs~-fG-rIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 122 SDSIKDANLYV---SGLPKTMTQKELEQIFSP-FG-RIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred hhhhcccceEE---ecCCccchHHHHHHHHHH-hh-hhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 33445567888 8999 999999999995 99 8777766666 89999999999987766665543
No 70
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=66.66 E-value=6.9 Score=40.88 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHH---HhCCCCcccEEECCceeEE
Q 045525 213 ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITL---ILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 213 vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~---vL~g~~~~kf~Ingk~vWa 277 (295)
++|+.++.-|+- || -||.|..+. +|+..+||+|.|...+.-.. .||| |.|.|+-|=+
T Consensus 290 ite~~lr~ifep-fg--~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-----felAGr~ikV 352 (549)
T KOG0147|consen 290 ITEDMLRGIFEP-FG--KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-----FELAGRLIKV 352 (549)
T ss_pred chHHHHhhhccC-cc--cceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-----ceecCceEEE
Confidence 999999999995 99 677776665 89999999999998877544 4555 7888887754
No 71
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=65.95 E-value=31 Score=35.69 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec----cCCCCceEEEEecCHHHHHH----HhCCCCc
Q 045525 196 DADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC----CRDQSLYARVIVRSPAYITL----ILGENEL 265 (295)
Q Consensus 196 v~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~----~~~qplfarivf~s~~~v~~----vL~g~~~ 265 (295)
++.+.--||| ++.| -+++||.+=|.+ -| +-|+.|++.. ..+-++||+|-+-|..+.+. ++.|
T Consensus 160 ~Svan~RLFi---G~IPK~k~keeIlee~~k-Vt-eGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g--- 231 (506)
T KOG0117|consen 160 VSVANCRLFI---GNIPKTKKKEEILEEMKK-VT-EGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG--- 231 (506)
T ss_pred EeeecceeEe---ccCCccccHHHHHHHHHh-hC-CCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC---
Confidence 5666677999 9999 899999999994 88 7788888877 57789999999999887544 4555
Q ss_pred ccEEECCceeEEEecccCCC
Q 045525 266 KQFDIHGKDIRVRRFVPKPA 285 (295)
Q Consensus 266 ~kf~Ingk~vWarky~pk~~ 285 (295)
||.+-|..+-+-=..|+..
T Consensus 232 -~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 232 -KIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred -ceeecCCcceeeccCcccC
Confidence 3455555554444455543
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=65.93 E-value=9 Score=37.98 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec-cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCc
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC-CRDQSLYARVIVRSPAYITLILGENELKQFDIHGK 273 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~-~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk 273 (295)
+-....+|+ +|.. ++.+++++.|.. || .+.-.-.|.+ .+++.+||+|-|.+......++.. ...-.|.||
T Consensus 267 ~~~~~nl~v---knld~~~~~e~L~~~f~~-~G-eI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~--~n~~~i~~k 339 (369)
T KOG0123|consen 267 SLQGANLYV---KNLDETLSDEKLRKIFSS-FG-EITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTE--MNGRLIGGK 339 (369)
T ss_pred ccccccccc---ccCccccchhHHHHHHhc-cc-ceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHh--hChhhhcCC
Confidence 445566777 5444 999999999995 99 4444333333 899999999999999887777664 122256677
Q ss_pred eeEEEecccCC
Q 045525 274 DIRVRRFVPKP 284 (295)
Q Consensus 274 ~vWarky~pk~ 284 (295)
.+-+....++.
T Consensus 340 ~l~vav~qr~~ 350 (369)
T KOG0123|consen 340 PLYVAVAQRKE 350 (369)
T ss_pred chhhhHHhhhc
Confidence 66544444433
No 73
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=65.81 E-value=18 Score=29.70 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCcc-cCHHHHHHHHHHhhCCCceeEEEeec---------cCCCCceEEEEecCHHHHHHHhCCCC
Q 045525 209 KGHP-ISRAELFEFFIRRYGEDCVEDIKMGC---------CRDQSLYARVIVRSPAYITLILGENE 264 (295)
Q Consensus 209 ~G~P-vse~Ei~efF~~~yG~~cve~v~M~~---------~~~qplfarivf~s~~~v~~vL~g~~ 264 (295)
=||| =....|.++|.+ || +++|+..+-+ .....-.=+|.|+++....+.|.-+.
T Consensus 12 FGfp~~~~~~Vl~~F~~-~G-~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG 75 (100)
T PF05172_consen 12 FGFPPSASNQVLRHFSS-FG-TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNG 75 (100)
T ss_dssp E---GGGHHHHHHHHHC-CS--EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTT
T ss_pred EccCHHHHHHHHHHHHh-cc-eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCC
Confidence 3888 456788999995 99 9999985533 24678889999999999999998544
No 74
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=64.86 E-value=4.6 Score=35.24 Aligned_cols=15 Identities=40% Similarity=0.990 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHHhhC
Q 045525 213 ISRAELFEFFIRRYG 227 (295)
Q Consensus 213 vse~Ei~efF~~~yG 227 (295)
.|++||++||..+||
T Consensus 74 ~s~~eI~~~~v~rYG 88 (148)
T PF03918_consen 74 KSDEEIIDYFVERYG 88 (148)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcC
Confidence 589999999999999
No 75
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=64.62 E-value=4.9 Score=34.59 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=14.2
Q ss_pred cCHHHHHHHHHHhhC
Q 045525 213 ISRAELFEFFIRRYG 227 (295)
Q Consensus 213 vse~Ei~efF~~~yG 227 (295)
-|++||++||..+||
T Consensus 74 ~sd~eI~~~~v~RYG 88 (126)
T PRK10144 74 KSEVEIIGWMTERYG 88 (126)
T ss_pred CCHHHHHHHHHHhcC
Confidence 489999999999999
No 76
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.89 E-value=15 Score=28.05 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecC
Q 045525 216 AELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRS 252 (295)
Q Consensus 216 ~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s 252 (295)
+|||+||+. .| -|+.++++. ++...+=|=+||..
T Consensus 9 ~~iR~~fs~-lG--~I~vLYvn~~eS~~~~~~GGvV~eD 44 (62)
T PF15513_consen 9 AEIRQFFSQ-LG--EIAVLYVNPYESDEDRLTGGVVMED 44 (62)
T ss_pred HHHHHHHHh-cC--cEEEEEEcccccCCCeEeccEEEeC
Confidence 689999995 99 899999998 78888888888754
No 77
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=56.82 E-value=23 Score=32.72 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHhhCCCceeE-EEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCceeEEEecccCC
Q 045525 213 ISRAELFEFFIRRYGEDCVED-IKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKDIRVRRFVPKP 284 (295)
Q Consensus 213 vse~Ei~efF~~~yG~~cve~-v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~vWarky~pk~ 284 (295)
|.|.-+.+-|. +|| .|+.. -.|.+ ++.++.||.|.|.|.+.-+.++.... -..++.+.+=+--+..|.
T Consensus 108 vDe~~L~dtFs-afG-~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n--gq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 108 VDEKLLYDTFS-AFG-VLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN--GQYLCNRPITVSYAFKKD 178 (203)
T ss_pred hhHHHHHHHHH-hcc-ccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc--cchhcCCceEEEEEEecC
Confidence 78888899999 599 77763 44666 78999999999999998777765311 113444555444333333
No 78
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=52.73 E-value=35 Score=33.69 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=47.7
Q ss_pred EEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHH---hCCCCcccEEECCceeEEEe
Q 045525 205 ATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLI---LGENELKQFDIHGKDIRVRR 279 (295)
Q Consensus 205 vTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~v---L~g~~~~kf~Ingk~vWark 279 (295)
.-|.+..| .++.|++..|+ +|| .++|==++. -||+|-...+..-..+ |.| ++|+|+-|=+.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe-~yg-kVlECDIvK------NYgFVHiEdktaaedairNLhg-----YtLhg~nInVea 70 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFE-QYG-KVLECDIVK------NYGFVHIEDKTAAEDAIRNLHG-----YTLHGVNINVEA 70 (346)
T ss_pred chhccCCCcccchHHHHHHHH-hhC-ceEeeeeec------ccceEEeecccccHHHHhhccc-----ceecceEEEEEe
Confidence 33448888 99999999999 599 888765552 4888888776653333 445 478999887777
Q ss_pred cccC
Q 045525 280 FVPK 283 (295)
Q Consensus 280 y~pk 283 (295)
-.-|
T Consensus 71 SksK 74 (346)
T KOG0109|consen 71 SKSK 74 (346)
T ss_pred cccc
Confidence 6555
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=51.21 E-value=46 Score=31.57 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=50.7
Q ss_pred CCCceEEEEccC-CcccCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECCce
Q 045525 198 DTDRTLFATFSK-GHPISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHGKD 274 (295)
Q Consensus 198 ~d~Rt~FvTFS~-G~Pvse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ingk~ 274 (295)
.+.|..=|.+|+ -|-|++++|+|+|+. || -++.+.++= .+++-+-|-|+|..-+-..+++.-.+. +.++|+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~-~~--~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g--v~ldG~~ 153 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAE-FG--ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG--VALDGRP 153 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHH-hc--cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC--cccCCce
Confidence 445522266666 455999999999995 98 455555544 888889999999988655555443222 4566666
Q ss_pred eEEEe
Q 045525 275 IRVRR 279 (295)
Q Consensus 275 vWark 279 (295)
+=.-.
T Consensus 154 mk~~~ 158 (243)
T KOG0533|consen 154 MKIEI 158 (243)
T ss_pred eeeEE
Confidence 44333
No 80
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=50.49 E-value=48 Score=32.40 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=56.1
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEee-c--cCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMG-C--CRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~-~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
.+|.||=-| .+=.| +|+||++..|.. -| -||+...- | +|++=+||+|-.-.++-.++..+- ..-+++-
T Consensus 37 t~~skTNLI--vNYLPQ~MTqdE~rSLF~S-iG--eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Aint--lNGLrLQ 109 (360)
T KOG0145|consen 37 TDESKTNLI--VNYLPQNMTQDELRSLFGS-IG--EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINT--LNGLRLQ 109 (360)
T ss_pred cCcccceee--eeecccccCHHHHHHHhhc-cc--ceeeeeeeeccccccccccceeeecChHHHHHHHhh--hcceeec
Confidence 567777644 24456 999999999996 88 56666544 3 899999999999888877776654 2224555
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
.|-|=+.-..|.
T Consensus 110 ~KTIKVSyARPS 121 (360)
T KOG0145|consen 110 NKTIKVSYARPS 121 (360)
T ss_pred cceEEEEeccCC
Confidence 666655555454
No 81
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=50.08 E-value=54 Score=23.51 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=33.2
Q ss_pred CCcccCH-HHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHh
Q 045525 209 KGHPISR-AELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLIL 260 (295)
Q Consensus 209 ~G~Pvse-~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL 260 (295)
.|||-+. +++.+||.. || -|+++.. +....+..|-|.+.......|
T Consensus 7 ~Gf~~~~~~~vl~~F~~-fG--eI~~~~~---~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 7 SGFPPDLAEEVLEHFAS-FG--EIVDIYV---PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EeECchHHHHHHHHHHh-cC--CEEEEEc---CCCCcEEEEEECCHHHHHhhC
Confidence 5888555 458999995 99 5555555 466788899999987766543
No 82
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=49.90 E-value=16 Score=35.20 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=47.4
Q ss_pred CCCCCCCceEEEEccCCcc-cCHHH-HHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhCCCCcccEEEC
Q 045525 194 ANDADTDRTLFATFSKGHP-ISRAE-LFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILGENELKQFDIH 271 (295)
Q Consensus 194 ~~v~~d~Rt~FvTFS~G~P-vse~E-i~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~g~~~~kf~In 271 (295)
..--.++|-+ ++|++.+- +.... ++|.++..|| .+ .++| +|..++|+|+ .|+|-
T Consensus 146 gN~lkgsrpl-LsFd~~Fd~~pHlkl~Kell~q~fg-----------iP---~~hr---kSkpf~Dhvf------~Fsi~ 201 (299)
T KOG2971|consen 146 GNCLKGSRPL-LSFDKAFDELPHLKLLKELLEQIFG-----------IP---KHHR---KSKPFVDHVF------TFSIL 201 (299)
T ss_pred cccccCCcce-eecccccccchHHHHHHHHHHHHcC-----------CC---CCCc---ccCCccceEE------EEEEe
Confidence 3446788999 99999876 44444 4899999999 21 1121 5667777765 46888
Q ss_pred CceeEEEecccC
Q 045525 272 GKDIRVRRFVPK 283 (295)
Q Consensus 272 gk~vWarky~pk 283 (295)
..+||.|.|.=.
T Consensus 202 D~~IWfRnyqI~ 213 (299)
T KOG2971|consen 202 DGKIWFRNYQIS 213 (299)
T ss_pred cCeEEEEEeEec
Confidence 899999999853
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=45.40 E-value=72 Score=26.06 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=45.3
Q ss_pred CCcc--cCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhCC
Q 045525 209 KGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILGE 262 (295)
Q Consensus 209 ~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~g 262 (295)
|..| .|.+++.+.+.+.+. +..+=+++.- ++.--+||+|=|.+++.+...-..
T Consensus 7 rNIPn~~t~~~L~~~l~~~~~-g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 7 RNIPNKYTQEMLIQILDEHFK-GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred ecCCCCCCHHHHHHHHHHhcc-CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 7888 999999999998776 7888888866 677899999999999998777654
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=44.62 E-value=19 Score=33.56 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=36.2
Q ss_pred ccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 207 FSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 207 FS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
|.+..| ..+.++.+||.+ || -+-++.|. .+||++-|......+.+..
T Consensus 5 ~vg~~~~~~~~~d~E~~f~~-yg--~~~d~~mk-----~gf~fv~fed~rda~Dav~ 53 (216)
T KOG0106|consen 5 YIGRLPYRARERDVERFFKG-YG--KIPDADMK-----NGFGFVEFEDPRDADDAVH 53 (216)
T ss_pred eecccCCccchhHHHHHHhh-cc--ccccceee-----cccceeccCchhhhhcccc
Confidence 347666 899999999995 99 66666663 4788999998888766544
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=41.98 E-value=23 Score=37.17 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=40.6
Q ss_pred CCCCceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHHHHHHHhC
Q 045525 197 ADTDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~~v~~vL~ 261 (295)
.-..|||+| -..| ||++++.+-|. .|| ++-| |.| +.-....-.|-|-..-..++.|.
T Consensus 72 ~~~~~~L~v---~nl~~~Vsn~~L~~~f~-~yG-eir~-ir~--t~~~~~~~~v~FyDvR~A~~Alk 130 (549)
T KOG4660|consen 72 DMNQGTLVV---FNLPRSVSNDTLLRIFG-AYG-EIRE-IRE--TPNKRGIVFVEFYDVRDAERALK 130 (549)
T ss_pred cCccceEEE---EecCCcCCHHHHHHHHH-hhc-chhh-hhc--ccccCceEEEEEeehHhHHHHHH
Confidence 335799987 4555 99999999999 699 7777 666 55556667777766555444443
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=36.57 E-value=84 Score=29.32 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=46.3
Q ss_pred CCCCceEEEEccCCcccCHHHHHHHHHHhhCCCceeEEEeec---cCCCCceEEEEecCHHHHHHHhC
Q 045525 197 ADTDRTLFATFSKGHPISRAELFEFFIRRYGEDCVEDIKMGC---CRDQSLYARVIVRSPAYITLILG 261 (295)
Q Consensus 197 ~~d~Rt~FvTFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~---~~~qplfarivf~s~~~v~~vL~ 261 (295)
..|.+++|+... ++-++-+++...|.. +| -+.+|.|.. .+++-+||.|-|.+...+..-|.
T Consensus 98 ~~d~~sv~v~nv-d~~~t~~~~e~hf~~-Cg--~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~ 161 (231)
T KOG4209|consen 98 EVDAPSVWVGNV-DFLVTLTKIELHFES-CG--GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK 161 (231)
T ss_pred ccCCceEEEecc-ccccccchhhheeec-cC--CccceeeeccccCCCcceeEEEecccHhhhHHHhh
Confidence 456678988443 455677778889984 99 666666666 67799999999999999776665
No 87
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=34.54 E-value=65 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhc
Q 045525 16 AIPLTDFQSFHNIDREAYAKLVIQLGLDSDTSKKIVAFWNWLETK 60 (295)
Q Consensus 16 ~~t~ee~~~Fh~idR~ly~rLV~~L~rdp~~S~~VmAlwLWLE~~ 60 (295)
-+|+.|..=+|+.-|+||..|...+=-+| |=||||+.
T Consensus 54 ~l~mkeYkEvysl~rqLyE~lr~~FVdeP--------fKlWle~N 90 (168)
T PF10866_consen 54 QLTMKEYKEVYSLGRQLYEILRGDFVDEP--------FKLWLEQN 90 (168)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCc--------hHHHHHhh
Confidence 57899999999999999999987665555 56899974
No 88
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=34.19 E-value=36 Score=31.27 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=20.4
Q ss_pred cCCcccCHHHHHHHHHHhhCCC
Q 045525 208 SKGHPISRAELFEFFIRRYGED 229 (295)
Q Consensus 208 S~G~Pvse~Ei~efF~~~yG~~ 229 (295)
++|.||+.+-+.+|+.|+|+.|
T Consensus 42 ~~G~~I~H~~Li~FI~RNY~~D 63 (187)
T PF11161_consen 42 APGEPIRHEALIEFINRNYEHD 63 (187)
T ss_pred CCCCeeecHHHHHHHHhccCCC
Confidence 6999999999999999999944
No 89
>COG5606 Uncharacterized conserved small protein [Function unknown]
Probab=32.34 E-value=60 Score=26.65 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCc-hhhhHhhhcCCcchHHHHHHHHHHH
Q 045525 47 SKKIVAFWNWLETKGY-SHFVHKSLQLTESSLPRLYGLALES 87 (295)
Q Consensus 47 S~~VmAlwLWLE~~G~-~~~i~~i~sl~d~~~~~l~~lA~EA 87 (295)
+...|+...|+|+.+. +.=|..++..+.+. ++.||+=-
T Consensus 27 ~~l~~~i~~~i~q~~l~Q~qiae~lgV~qpr---vS~l~~gk 65 (91)
T COG5606 27 SALMMAIKQWIEQAALSQAQIAELLGVTQPR---VSDLARGK 65 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHhcc
Confidence 5678999999999998 66677777777777 88888643
No 90
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=30.01 E-value=64 Score=31.69 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=56.3
Q ss_pred CCceEEEEccCCcc--cCHHHHHHHHHHhhCCCcee-EEEeec-cCCCCceEEEEecCHHHHH---HHhCCCCcccEEEC
Q 045525 199 TDRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVE-DIKMGC-CRDQSLYARVIVRSPAYIT---LILGENELKQFDIH 271 (295)
Q Consensus 199 d~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve-~v~M~~-~~~qplfarivf~s~~~v~---~vL~g~~~~kf~In 271 (295)
|-=-+|| -..| ....|+..-|-- || .+|- .|.|.+ ++++--||+|-|++...-. ..+|| |.|+
T Consensus 284 eGCNlFI---YHLPQEFgDaEliQmF~P-FG-hivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNG-----FQIG 353 (371)
T KOG0146|consen 284 EGCNLFI---YHLPQEFGDAELIQMFLP-FG-HIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNG-----FQIG 353 (371)
T ss_pred CcceEEE---EeCchhhccHHHHHHhcc-cc-ceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcc-----hhhh
Confidence 3346888 5666 788999999995 99 6554 577777 9999999999999877644 34555 4577
Q ss_pred CceeEEEecccCCC
Q 045525 272 GKDIRVRRFVPKPA 285 (295)
Q Consensus 272 gk~vWarky~pk~~ 285 (295)
=|.+-++--.||+.
T Consensus 354 MKRLKVQLKRPkda 367 (371)
T KOG0146|consen 354 MKRLKVQLKRPKDA 367 (371)
T ss_pred hhhhhhhhcCcccc
Confidence 67666665566654
No 91
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=29.51 E-value=39 Score=30.14 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=14.2
Q ss_pred cCHHHHHHHHHHhhC
Q 045525 213 ISRAELFEFFIRRYG 227 (295)
Q Consensus 213 vse~Ei~efF~~~yG 227 (295)
-|+.||.+|+..+||
T Consensus 78 kS~~qIid~mVaRYG 92 (153)
T COG3088 78 KSDQQIIDYMVARYG 92 (153)
T ss_pred CcHHHHHHHHHHhhc
Confidence 489999999999999
No 92
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=28.12 E-value=2e+02 Score=22.52 Aligned_cols=57 Identities=5% Similarity=-0.062 Sum_probs=39.5
Q ss_pred EEccCCcccCHHHHHHHHHHhhCCCc------eeEEEeec-----cCCCC--ceEEEEecCHHHHHHHhCC
Q 045525 205 ATFSKGHPISRAELFEFFIRRYGEDC------VEDIKMGC-----CRDQS--LYARVIVRSPAYITLILGE 262 (295)
Q Consensus 205 vTFS~G~Pvse~Ei~efF~~~yG~~c------ve~v~M~~-----~~~qp--lfarivf~s~~~v~~vL~g 262 (295)
+++..-.|++.+|+..|.....+ +- +.+..+.. .+.+| +.+.+.|+|.+.....++.
T Consensus 3 ~~vlyr~p~~~e~F~~yy~~~H~-pL~~~~pg~~~y~~~~~~~~~~~~~~~d~i~el~Fds~e~~~~a~~s 72 (100)
T TIGR02118 3 VSVLYEQPEDGAAFDHHYRDTHV-PLAQKLPGLRRYAVDKIVSGLPGSSPYYGMCELYFDSIEDFQAAFDS 72 (100)
T ss_pred EEEEcCCCCCHHHHHHHHHhccH-HHHHhCcCceEEEEecccCCCCCCCCeeEEEEEEECCHHHHHHHHcC
Confidence 45556677999999999998766 31 33333322 23333 5678999999999999865
No 93
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=25.48 E-value=1.2e+02 Score=26.51 Aligned_cols=56 Identities=25% Similarity=0.520 Sum_probs=40.2
Q ss_pred HHHHHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcCc--hhhhHhhhcCCcchHHHHHHHHHHHHHHHHhhc
Q 045525 22 FQSFHNIDREAYAKLVIQLGLDSDTSKKIVAFWNWLETKGY--SHFVHKSLQLTESSLPRLYGLALESILCLDCLA 95 (295)
Q Consensus 22 ~~~Fh~idR~ly~rLV~~L~rdp~~S~~VmAlwLWLE~~G~--~~~i~~i~sl~d~~~~~l~~lA~EA~~cL~cL~ 95 (295)
|.+.|.--|-+|.---- | -+.|. -|.-||-++.| +++|.+ -..+-.|-..||.||.
T Consensus 50 fQLHHQRSRYIY~LyyK---R-~aISt---~LY~wL~k~~yaD~~Liak-----------W~k~GYEkLCCLRCIQ 107 (146)
T COG5132 50 FQLHHQRSRYIYNLYYK---R-GAIST---KLYGWLSKNRYADHELIAK-----------WDKVGYEKLCCLRCIQ 107 (146)
T ss_pred HHHHHhhhHHHHHHHhh---h-hhHHH---HHHHHHHHhcccchhHhhh-----------hcccchhhhhhHhhcC
Confidence 67888888877754321 1 12333 36789998888 777777 5677789999999997
No 94
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=25.42 E-value=38 Score=32.51 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhC--CCCcccEEECCceeEEE
Q 045525 218 LFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILG--ENELKQFDIHGKDIRVR 278 (295)
Q Consensus 218 i~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~--g~~~~kf~Ingk~vWar 278 (295)
++..|..+|| -||.+.+-+ ..+-.+=..|-|++++.....++ .++ +++|++|-|-
T Consensus 85 ~f~E~~~kyg--Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR----w~~G~pi~ae 143 (260)
T KOG2202|consen 85 VFTELEDKYG--EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR----WYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHhh--hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc----cccCCcceee
Confidence 4444556899 445554444 34445556778999988555544 234 8999998763
No 95
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=23.36 E-value=1.6e+02 Score=29.84 Aligned_cols=69 Identities=26% Similarity=0.369 Sum_probs=43.2
Q ss_pred CceEEEEccCCcc--cCHHHHHHHHHHhhCCCceeEEEeec---------cCCCCceEEEEecCHHHHHH---HhCCCCc
Q 045525 200 DRTLFATFSKGHP--ISRAELFEFFIRRYGEDCVEDIKMGC---------CRDQSLYARVIVRSPAYITL---ILGENEL 265 (295)
Q Consensus 200 ~Rt~FvTFS~G~P--vse~Ei~efF~~~yG~~cve~v~M~~---------~~~qplfarivf~s~~~v~~---vL~g~~~ 265 (295)
.-.+|| .|.| ||-+|+.++|.+ +| =.......++ .|..-+=|.+++--.+.|+. +|++..
T Consensus 134 Nt~VYV---sgLP~DiT~dE~~~~~sK-cG-iI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~- 207 (382)
T KOG1548|consen 134 NTSVYV---SGLPLDITVDEFAEVMSK-CG-IIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE- 207 (382)
T ss_pred CceEEe---cCCCCcccHHHHHHHHHh-cc-eEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-
Confidence 346888 9999 999999999995 66 1222222222 35555667888776666654 455532
Q ss_pred ccEEECCceeEEE
Q 045525 266 KQFDIHGKDIRVR 278 (295)
Q Consensus 266 ~kf~Ingk~vWar 278 (295)
++|+.+-+.
T Consensus 208 ----~rg~~~rVe 216 (382)
T KOG1548|consen 208 ----LRGKKLRVE 216 (382)
T ss_pred ----ccCcEEEEe
Confidence 346655443
No 96
>PF14214 Helitron_like_N: Helitron helicase-like domain at N-terminus
Probab=22.93 E-value=1.8e+02 Score=25.22 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=15.6
Q ss_pred hCCCceeEEEeec-cCCCCceEEEEe
Q 045525 226 YGEDCVEDIKMGC-CRDQSLYARVIV 250 (295)
Q Consensus 226 yG~~cve~v~M~~-~~~qplfarivf 250 (295)
|| +|.+.++.-| .++...++.+++
T Consensus 159 ~G-~v~~~~~~~E~Q~RG~~H~H~l~ 183 (184)
T PF14214_consen 159 FG-KVSAYYYRVEFQKRGSPHAHILL 183 (184)
T ss_pred cc-ceeEEEEEEEeccCCCCeeeeEe
Confidence 56 6766666666 666666666653
No 97
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=22.74 E-value=69 Score=25.65 Aligned_cols=17 Identities=12% Similarity=0.528 Sum_probs=15.2
Q ss_pred Ccc-cCHHHHHHHHHHhh
Q 045525 210 GHP-ISRAELFEFFIRRY 226 (295)
Q Consensus 210 G~P-vse~Ei~efF~~~y 226 (295)
||+ ||++||-+||+.++
T Consensus 24 GY~~vt~~dlw~yl~~~~ 41 (87)
T PF13797_consen 24 GYESVTEEDLWSYLTEKK 41 (87)
T ss_pred CcCcCCHHHHHHHHHHHH
Confidence 899 99999999998754
No 98
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=1.9e+02 Score=29.52 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=53.6
Q ss_pred CCCCCCceEEEEccCCcccCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHHHHHhCCCCcccEEECC
Q 045525 195 NDADTDRTLFATFSKGHPISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYITLILGENELKQFDIHG 272 (295)
Q Consensus 195 ~v~~d~Rt~FvTFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v~~vL~g~~~~kf~Ing 272 (295)
.+.+.+--||| -|=.|||.||=-|-.-.+|| ..+---.+.+ +|.+=.||+|-|...+..........-| .|+.
T Consensus 234 d~~PPeNVLFV--CKLNPVTtDeDLeiIFSrFG-~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv--LIDD 308 (479)
T KOG0415|consen 234 DVKPPENVLFV--CKLNPVTTDEDLEIIFSRFG-KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV--LIDD 308 (479)
T ss_pred ccCCCcceEEE--EecCCcccccchhhHHhhcc-cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce--eecc
Confidence 34444557888 47789998876555444699 7777677777 9999999999999998877766654322 3444
Q ss_pred cee
Q 045525 273 KDI 275 (295)
Q Consensus 273 k~v 275 (295)
+.|
T Consensus 309 rRI 311 (479)
T KOG0415|consen 309 RRI 311 (479)
T ss_pred ceE
Confidence 433
No 99
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=22.04 E-value=1.5e+02 Score=22.26 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHhCCCCcccEEECCceeEEEecccCC
Q 045525 256 ITLILGENELKQFDIHGKDIRVRRFVPKP 284 (295)
Q Consensus 256 v~~vL~g~~~~kf~Ingk~vWarky~pk~ 284 (295)
..+|++...-+...-||..||+...-+++
T Consensus 6 AkeI~~S~~~i~V~y~G~pV~Ie~vde~~ 34 (58)
T PF08141_consen 6 AKEIAESPDMIEVTYNGVPVWIEHVDEEN 34 (58)
T ss_pred HHHHHcCCceEEEEECCEEEEEEEEcCCC
Confidence 56788887788899999999999886554
No 100
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=21.30 E-value=66 Score=26.67 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=12.6
Q ss_pred cccCHHHHHHHHHH
Q 045525 211 HPISRAELFEFFIR 224 (295)
Q Consensus 211 ~Pvse~Ei~efF~~ 224 (295)
.|+||||++||-.+
T Consensus 32 ~PlTEDElkEF~~k 45 (97)
T PF15337_consen 32 LPLTEDELKEFQVK 45 (97)
T ss_pred CcCcHHHHHHHHHH
Confidence 49999999999876
No 101
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=21.17 E-value=3.6e+02 Score=20.20 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=39.5
Q ss_pred eEEEEccCCcccCHHHHHHHHHHhhC--CCceeEEEeeccCCCCceEEEEecCHHH--HHHHhCCCCcccEEECCceeEE
Q 045525 202 TLFATFSKGHPISRAELFEFFIRRYG--EDCVEDIKMGCCRDQSLYARVIVRSPAY--ITLILGENELKQFDIHGKDIRV 277 (295)
Q Consensus 202 t~FvTFS~G~Pvse~Ei~efF~~~yG--~~cve~v~M~~~~~qplfarivf~s~~~--v~~vL~g~~~~kf~Ingk~vWa 277 (295)
++|+.--+..-++.-+|..++.+.-| .+.|-+|.+.+ .|.++-...+.. +-..|++. .++||.+=+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----~~S~vev~~~~a~~v~~~l~~~-----~~~gk~v~v 71 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD-----NFSFVEVPEEVAEKVLEALNGK-----KIKGKKVRV 71 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S-----S-EEEEE-TT-HHHHHHHHTT-------SSS----E
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee-----eEEEEEECHHHHHHHHHHhcCC-----CCCCeeEEE
Confidence 46665556666999999999999877 57888999855 677776665533 44444443 688888766
Q ss_pred Ee
Q 045525 278 RR 279 (295)
Q Consensus 278 rk 279 (295)
+.
T Consensus 72 e~ 73 (74)
T PF03880_consen 72 ER 73 (74)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 102
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=20.95 E-value=95 Score=24.73 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=18.9
Q ss_pred cCCcccCHHHHHHHHHHhhCC
Q 045525 208 SKGHPISRAELFEFFIRRYGE 228 (295)
Q Consensus 208 S~G~Pvse~Ei~efF~~~yG~ 228 (295)
..|.|+|++++++-..++||+
T Consensus 13 ~~~~~~t~~~L~~~i~~~FG~ 33 (77)
T TIGR03853 13 ASGEPYTRESLKAAIEQKFGE 33 (77)
T ss_pred HcCCCcCHHHHHHHHHHHhCC
Confidence 368899999999999999993
No 103
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=20.82 E-value=1.6e+02 Score=22.05 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=24.2
Q ss_pred HHHHhCCCCcccEEECCceeEEEecccCC
Q 045525 256 ITLILGENELKQFDIHGKDIRVRRFVPKP 284 (295)
Q Consensus 256 v~~vL~g~~~~kf~Ingk~vWarky~pk~ 284 (295)
+.+|++....+...-||..+|+...-.++
T Consensus 6 AkeI~~S~~~i~V~Y~G~pV~Ie~vde~~ 34 (58)
T TIGR02861 6 AKEIAASPEMINVTYKGVPVYIEHVDEQS 34 (58)
T ss_pred HHHHHcCccceEEEECCEEEEEEEEcCCC
Confidence 56788887788999999999999986543
No 104
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=20.72 E-value=2e+02 Score=25.53 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=38.8
Q ss_pred EccCCcccCHHHHHHHHHHhhCCCceeEEEeeccCCCCceEEEEecCHH
Q 045525 206 TFSKGHPISRAELFEFFIRRYGEDCVEDIKMGCCRDQSLYARVIVRSPA 254 (295)
Q Consensus 206 TFS~G~Pvse~Ei~efF~~~yG~~cve~v~M~~~~~qplfarivf~s~~ 254 (295)
+++..-|++.+=+.+-|++ +| --||+|.+.+-.++--||+++++-..
T Consensus 52 ~~~p~RP~tHdll~~i~~~-l~-~~v~kVvI~d~~d~tyyA~L~~~~~~ 98 (151)
T COG1259 52 GVEPPRPLTHDLLVEIFEE-LG-ARVEKVVIDDLIDNTYYATLILEQDD 98 (151)
T ss_pred cCCCCCCcHHHHHHHHHHH-hC-CcEEEEEEEEeccCeEEEEEEEEcCC
Confidence 3445578999999999995 99 99999999996677899999987544
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=20.52 E-value=1.3e+02 Score=33.11 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=34.8
Q ss_pred CCcc--cCHHHHHHHHHHhhCCCceeEEEeec--cCCCCceEEEEecCHHHH
Q 045525 209 KGHP--ISRAELFEFFIRRYGEDCVEDIKMGC--CRDQSLYARVIVRSPAYI 256 (295)
Q Consensus 209 ~G~P--vse~Ei~efF~~~yG~~cve~v~M~~--~~~qplfarivf~s~~~v 256 (295)
++.| +|-+||-+||.. |- -.-.+|+... -|-.-+=++|-|.|.+..
T Consensus 873 ~n~Pf~v~l~dI~~FF~d-Y~-~~p~sI~~r~nd~G~pTGe~mvAfes~~eA 922 (944)
T KOG4307|consen 873 NNFPFDVTLEDIVEFFND-YE-PDPNSIRIRRNDDGVPTGECMVAFESQEEA 922 (944)
T ss_pred cCCCccccHHHHHHHhcc-cc-cCCCceeEeecCCCCcccceeEeecCHHHH
Confidence 8899 999999999995 76 3444555544 456666799999998764
Done!